Citrus Sinensis ID: 000432
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1513 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M1C7 | 1506 | ABC transporter C family | yes | no | 0.970 | 0.975 | 0.673 | 0.0 | |
| Q7FB56 | 1053 | Putative ABC transporter | no | no | 0.690 | 0.992 | 0.726 | 0.0 | |
| Q7GB25 | 1514 | ABC transporter C family | no | no | 0.902 | 0.901 | 0.529 | 0.0 | |
| Q9LK64 | 1514 | ABC transporter C family | no | no | 0.906 | 0.905 | 0.527 | 0.0 | |
| Q8VZZ4 | 1466 | ABC transporter C family | no | no | 0.899 | 0.928 | 0.511 | 0.0 | |
| Q9LK62 | 1493 | ABC transporter C family | no | no | 0.901 | 0.913 | 0.509 | 0.0 | |
| Q9LYS2 | 1453 | ABC transporter C family | no | no | 0.836 | 0.871 | 0.441 | 0.0 | |
| Q9LZJ5 | 1539 | ABC transporter C family | no | no | 0.886 | 0.871 | 0.415 | 0.0 | |
| Q7DM58 | 1516 | ABC transporter C family | no | no | 0.889 | 0.887 | 0.417 | 0.0 | |
| Q8LGU1 | 1464 | ABC transporter C family | no | no | 0.826 | 0.853 | 0.432 | 0.0 |
| >sp|Q9M1C7|AB9C_ARATH ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2 | Back alignment and function desciption |
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Score = 2042 bits (5290), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1011/1501 (67%), Positives = 1210/1501 (80%), Gaps = 32/1501 (2%)
Query: 17 TAWLPLRSPCFWEHIISIVVQLGFLGLLLLQLART--TLFRRLGADFRDLVVDKYPYGVK 74
T WL L + + ISI +Q+ FL L+ LA + R G++ + + K VK
Sbjct: 18 TQWLQLGNSLCLKERISIAMQVTFLAFFLIHLALKWFGVVRNRGSNDVEEDLKKQSITVK 77
Query: 75 LGICYKASMVSSTLIFGTHFIILLTVMLNTGGEAEAVCNSGILAFSSRIMQVVSWASTLF 134
Y S++ S I GTH ILL + ++ + C+S + FS+ + Q SW
Sbjct: 78 QSFSYNISLLCSVSILGTHCFILLLLFRDS---VVSRCDSSVSVFSAEVSQSFSWLFVSV 134
Query: 135 LLCKIIPNSAHVKFPWILRAWWFCSFLFSI-----LCTALHTYLRIRYRGQFRIQDYVDI 189
++ KI VKFPW+LR+WW CSF+ S TA H L QDY D+
Sbjct: 135 VVVKIRERRL-VKFPWMLRSWWLCSFILSFSFDAHFITAKHEPLEF--------QDYADL 185
Query: 190 IALLASTFLFGISIQGKTGLLLHTASSDTTEPFLNVKADKQFKSKRDS-----PYGKSTL 244
LLAS FL +SI+GKTG L SS TEP L D+ ++K+DS PYG +TL
Sbjct: 186 TGLLASLFLLAVSIRGKTGFHL-LESSGNTEPLL--LGDQTEQNKKDSYSSSSPYGNATL 242
Query: 245 LQLVTFSWLNPLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLDLVKEKEGSTNPSI 304
Q +TFSW+NPLF++G K+PLE DD+PD+D+KDSA F S+ F+Q L KEKEG N
Sbjct: 243 FQRITFSWINPLFSLGYKRPLEKDDVPDIDVKDSARFCSHAFDQKLKTTKEKEGPGNAFF 302
Query: 305 YKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLG 364
Y ++ ++ +KAAINA FAV+NA+T+Y+GPYLINDFV FL++K+S+SL GYLLAL FL
Sbjct: 303 YNSVLRYVWRKAAINAVFAVVNASTAYIGPYLINDFVEFLSEKQSQSLNHGYLLALGFLT 362
Query: 365 AKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQ 424
AK+VET+ QRQWIFGARQLGLRLRAALISH+Y+KGL LSSQSRQSHTSGEIINYMSVDVQ
Sbjct: 363 AKIVETVTQRQWIFGARQLGLRLRAALISHIYQKGLVLSSQSRQSHTSGEIINYMSVDVQ 422
Query: 425 RISDFIFYSNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQKRFQS 484
RI+DFI+Y N ++MLP+QI AIYIL+ +LGLG+LAAL TL VM CN P+TR+Q+ +QS
Sbjct: 423 RITDFIWYVNNIWMLPIQIFSAIYILQKHLGLGALAALVTTLMVMACNYPLTRLQRNYQS 482
Query: 485 KIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFI 544
IM+AKD+RM+ATSE+LKNMK LKLQAWD +FL K+++LR+ E LWKSLRL A + FI
Sbjct: 483 DIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRLQAFTTFI 542
Query: 545 FWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSAD 604
WG+P+ ISVVTF CML+G++LTAG VLSALATF+MLQ PIF LPDLLS + Q KVSAD
Sbjct: 543 LWGAPSLISVVTFVTCMLMGVKLTAGAVLSALATFQMLQSPIFGLPDLLSALVQSKVSAD 602
Query: 605 RIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVA 664
RIA+YLQ+ E Q+DAVEY K +E VE+ NG FSW PESS PTLD I+LKVK GMKVA
Sbjct: 603 RIASYLQQSETQKDAVEYCSKDHTELSVEIENGAFSWEPESSRPTLDDIELKVKSGMKVA 662
Query: 665 ICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSC 724
+CG VGSGKSSLLS ILGEIQK+ GTV++SG +AYVPQSPWIL+G IR+NILFG+ Y+S
Sbjct: 663 VCGAVGSGKSSLLSSILGEIQKLKGTVRVSGKQAYVPQSPWILSGTIRDNILFGSMYESE 722
Query: 725 KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPF 784
KY+RTV+ACAL+KDFELF++GDLTEIGERGINMSGGQKQRIQIARAVYQ+ADIYLLDDPF
Sbjct: 723 KYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIARAVYQNADIYLLDDPF 782
Query: 785 SAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLK 844
SAVDAHTG +LF+DCLMGILKDK+VLYVTHQVEFLPAAD+ILVM+NGR+ QAG+FEELLK
Sbjct: 783 SAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQNGRVMQAGKFEELLK 842
Query: 845 QNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELS 904
QNIGFEVLVGAH++AL+S+L++E SSR ++ + + D+ S + + + DSEH +S
Sbjct: 843 QNIGFEVLVGAHNEALDSILSIEKSSRNFKEGSKD-----DTASIAESLQTHCDSEHNIS 897
Query: 905 LEITEKGGKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWM 964
E +K KLVQ+EE EKG IGKEVY +YLT VKGG LVP I+LAQS FQ+LQ+ASNYWM
Sbjct: 898 TENKKKEAKLVQDEETEKGVIGKEVYLAYLTTVKGGLLVPFIILAQSCFQMLQIASNYWM 957
Query: 965 AWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSV 1024
AW +PPT++ P LGM +LLVY LL GSSLCVL R +LVAI GL TA+ F+ ML S+
Sbjct: 958 AWTAPPTAESIPKLGMGRILLVYALLAAGSSLCVLARTILVAIGGLSTAETFFSRMLCSI 1017
Query: 1025 HRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVF 1084
RAPM+FFDSTPTGRILNRAS DQSVLDLE+A +LGWCAFSIIQI+GTI VMSQVAWQV
Sbjct: 1018 FRAPMSFFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQVAWQVC 1077
Query: 1085 VIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTN 1144
VIFIPV C++YQ+YY PTAREL+R++ ++RAPILHHFAESLAGA TI AFDQ DRF +
Sbjct: 1078 VIFIPVAVACVFYQRYYTPTARELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFIS 1137
Query: 1145 ANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVT 1204
+NL LID+HSRPWFH SAMEWL FRLNLLS+FVFAFSLV+LVTLPEG+INPSIAGL VT
Sbjct: 1138 SNLVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIAGLGVT 1197
Query: 1205 YGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISF 1264
YG++LNVLQA++IWNICNAENKMISVERILQYS +PSEAPLV + RP NWP+VG+I F
Sbjct: 1198 YGLSLNVLQATVIWNICNAENKMISVERILQYSKIPSEAPLVIDGHRPLDNWPNVGSIVF 1257
Query: 1265 HNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN 1324
+LQ+RYAEH P+VLKNI+C FPG KK+GVVGRTGSGKSTLIQA+FRIVEP+ G+I+IDN
Sbjct: 1258 RDLQVRYAEHFPAVLKNITCEFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSQGTIVIDN 1317
Query: 1325 VDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAK 1384
VDITKIGLHDLRSRLGIIPQDP LFDGT+R NLDPL QY+D ++WEA+DKCQLGD++RAK
Sbjct: 1318 VDITKIGLHDLRSRLGIIPQDPALFDGTIRLNLDPLAQYTDHEIWEAIDKCQLGDVIRAK 1377
Query: 1385 EEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQE 1444
+E+LD+TV ENGENWSVGQRQL CLGR LLKKS+ILVLDEATASVDSATDGVIQKII+QE
Sbjct: 1378 DERLDATVVENGENWSVGQRQLVCLGRVLLKKSNILVLDEATASVDSATDGVIQKIINQE 1437
Query: 1445 FKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMRSQN 1504
FKDRTVVTIAHRIHTVI+SDLVLVLSDGRIAE+DSP KLL+REDSFFS+LIKEYS+RS +
Sbjct: 1438 FKDRTVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLLQREDSFFSKLIKEYSLRSNH 1497
Query: 1505 F 1505
F
Sbjct: 1498 F 1498
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Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q7FB56|AB15C_ARATH Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 1648 bits (4268), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 790/1087 (72%), Positives = 917/1087 (84%), Gaps = 42/1087 (3%)
Query: 419 MSVDVQRISDFIFYSNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRI 478
MSVDVQRI+DFI+Y N ++MLP+QI AIYIL+ +LGLG+LAAL TL VM CN P+TR+
Sbjct: 1 MSVDVQRITDFIWYVNSIWMLPIQIFSAIYILQKHLGLGALAALVTTLMVMACNYPLTRL 60
Query: 479 QKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLS 538
Q+ +QS IM+AKD+RM+ATSE+LKNMK LKLQAWD +FL K+++LR+ E LWKSLRL
Sbjct: 61 QRNYQSDIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRLQ 120
Query: 539 ATSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQ 598
+ FI WG+P+ ISVVTF CML+G++LTAG VLSALATF+MLQ PIF LPDLLS + Q
Sbjct: 121 DFTTFILWGAPSLISVVTFVTCMLMGVKLTAGAVLSALATFQMLQSPIFGLPDLLSALVQ 180
Query: 599 GKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVK 658
KVSADRIA+YLQ+ E Q+DAVEY +EF VE+ NG FSW PESS PTLD I+LKVK
Sbjct: 181 SKVSADRIASYLQQSETQKDAVEYCSNDHTEFSVEIENGAFSWEPESSRPTLDDIELKVK 240
Query: 659 RGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFG 718
GMKVAICG VGSGKSSL S ILGEIQK+ GTV++SG +AYVPQSPWIL+G IR+NILFG
Sbjct: 241 SGMKVAICGAVGSGKSSLPSSILGEIQKLKGTVRVSGKQAYVPQSPWILSGTIRDNILFG 300
Query: 719 NQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIY 778
+ Y+S KY+RTV+ACAL+KDFELF++GDLTEIGERGINMSGGQKQRIQIARAVYQ+ADIY
Sbjct: 301 SIYESEKYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIARAVYQNADIY 360
Query: 779 LLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGR 838
LLDDPFSAVDAHTG +LF+DCLMGILKDK+VLYVTHQVEFLPAAD+ILVM+NGR+ QAG+
Sbjct: 361 LLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQNGRVMQAGK 420
Query: 839 FEELLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHD 898
FEELLKQNIGFEVL +Q D
Sbjct: 421 FEELLKQNIGFEVL------------------------------------------TQCD 438
Query: 899 SEHELSLEITEKGGKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQV 958
SEH +S E +K KLVQ+EE EKG IGKEVY +YLT VKGG LVP I+LAQS FQ+LQ+
Sbjct: 439 SEHNISTENKKKEAKLVQDEETEKGVIGKEVYLTYLTTVKGGLLVPFIILAQSCFQMLQI 498
Query: 959 ASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFT 1018
ASNYWMAW +PPT++ P LGM +LLVY LL GSSLCVL R +LVAI GL TA+ F+
Sbjct: 499 ASNYWMAWTAPPTAESIPKLGMGRILLVYALLAAGSSLCVLARTILVAIGGLSTAETFFS 558
Query: 1019 NMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQ 1078
ML S+ RAPM++FDSTPTGRILNRAS DQSVLDLE+A +LGWCAFSIIQI+GTI VMSQ
Sbjct: 559 RMLCSIFRAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQ 618
Query: 1079 VAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQ 1138
VAWQV VIFIPV C++YQ+YY PT REL+R++ ++RAPILHHFAESLAGA TI AFDQ
Sbjct: 619 VAWQVCVIFIPVAVACVFYQRYYTPTERELSRMSGVERAPILHHFAESLAGATTIRAFDQ 678
Query: 1139 EDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSI 1198
DRF ++NL LID+HSRPWFH SAMEWL FRLNLLS+FVFAFSLV+LVTLPEG+INPSI
Sbjct: 679 RDRFISSNLVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSI 738
Query: 1199 AGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPD 1258
AGL VTYG++LNVLQA++IWNICNAENKMISVERILQ+S +PSEAPLV ++ RP NWP+
Sbjct: 739 AGLGVTYGLSLNVLQATVIWNICNAENKMISVERILQHSKIPSEAPLVIDDQRPLDNWPN 798
Query: 1259 VGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMG 1318
VG+I F +LQ+RYAEH P+VLKNI+C FPG KK+GVVGRTGSGKSTLIQA+FRIVEP+ G
Sbjct: 799 VGSIVFRDLQVRYAEHFPAVLKNITCAFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSHG 858
Query: 1319 SIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLG 1378
+I+IDNVDITKIGLHDLRSRLGIIPQD LFDGT+R NLDPL QY+D+++WEALDKCQLG
Sbjct: 859 TIVIDNVDITKIGLHDLRSRLGIIPQDNALFDGTIRLNLDPLAQYTDREIWEALDKCQLG 918
Query: 1379 DLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQ 1438
D++RAK+EKLD+TV ENGENWSVGQRQL CLGR LLKKS+ILVLDEATASVDSATDGVIQ
Sbjct: 919 DVIRAKDEKLDATVVENGENWSVGQRQLVCLGRVLLKKSNILVLDEATASVDSATDGVIQ 978
Query: 1439 KIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEY 1498
KII+QEFKDRTVVTIAHRIHTVI+SDLVLVLSDGRIAE+DSP KLL+REDSFFS+LIKEY
Sbjct: 979 KIINQEFKDRTVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLLQREDSFFSKLIKEY 1038
Query: 1499 SMRSQNF 1505
S+RS +F
Sbjct: 1039 SLRSNHF 1045
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7GB25|AB5C_ARATH ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1480 bits (3832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 743/1403 (52%), Positives = 997/1403 (71%), Gaps = 38/1403 (2%)
Query: 125 QVVSWASTLFLLCKIIPNSAHVKFPWILRAWWFCSFLFSILCTALHTYLRIRYRGQFRIQ 184
Q ++W FL+ + S+ K P+++R WWF +F LCT R+ G R
Sbjct: 119 QSLAWFVLSFLVLHLKYKSSE-KLPFLVRIWWFLAFSIC-LCTMYVDGRRLAIEGWSRCS 176
Query: 185 DYVDIIALLAST----FLFGISIQGKTGLLLHTASSDTTEPFLNVKADKQFKSKRDSPYG 240
+V +A LA T FL ++ +G +G+ + +SSD EP L +++ + +PY
Sbjct: 177 SHV--VANLAVTPALGFLCFLAWRGVSGIQVTRSSSDLQEPLL---VEEEAACLKVTPYS 231
Query: 241 KSTLLQLVTFSWLNPLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLDLVKEKEGST 300
+ L+ L+T SWL+PL + G K+PLEL DIP + +D A+ + + K + S
Sbjct: 232 TAGLVSLITLSWLDPLLSAGSKRPLELKDIPLLAPRDRAKSSYKVLKSNWKRCKSENPSK 291
Query: 301 NPSIYKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLAL 360
PS+ +AI K+AA NA FA +N SYVGPYLI+ FV++L K+ E GY+LA
Sbjct: 292 PPSLARAIMKSFWKEAACNAVFAGLNTLVSYVGPYLISYFVDYLGGKEIFPHE-GYVLAG 350
Query: 361 AFLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMS 420
F +K++ET+ RQW G LG+ +R+AL + +YRKGL LSS ++Q+HTSGEI+NYM+
Sbjct: 351 IFFTSKLIETVTTRQWYMGVDILGMHVRSALTAMVYRKGLKLSSIAKQNHTSGEIVNYMA 410
Query: 421 VDVQRISDFIFYSNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQK 480
VDVQRI D+ +Y + ++MLP+QI LA+ IL ++G+ ++A L AT+ + IP+ ++Q+
Sbjct: 411 VDVQRIGDYSWYLHDIWMLPMQIVLALAILYKSVGIAAVATLVATIISILVTIPLAKVQE 470
Query: 481 RFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSAT 540
+Q K+M AKD RMR TSE L+NM+ LKLQAW+ R+ +LE +R+ E WL K+L A
Sbjct: 471 DYQDKLMTAKDERMRKTSECLRNMRVLKLQAWEDRYRVRLEEMREEEYGWLRKALYSQAF 530
Query: 541 SAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGK 600
FIFW SP F++ VTF + LG QLTAG VLSALATFR+LQ+P+ N PDL+S +AQ K
Sbjct: 531 VTFIFWSSPIFVAAVTFATSIFLGTQLTAGGVLSALATFRILQEPLRNFPDLVSMMAQTK 590
Query: 601 VSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRG 660
VS DRI+ +LQE+E+Q DA +P+G S +E+ +G F W+P SS PTL GIQ+KV++G
Sbjct: 591 VSLDRISGFLQEEELQEDATVVIPRGLSNIAIEIKDGVFCWDPFSSRPTLSGIQMKVEKG 650
Query: 661 MKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQ 720
M+VA+CGTVGSGKSS +SCILGEI K++G V+I GT YV QS WI +GNI ENILFG+
Sbjct: 651 MRVAVCGTVGSGKSSFISCILGEIPKISGEVRICGTTGYVSQSAWIQSGNIEENILFGSP 710
Query: 721 YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLL 780
+ KY ++AC+L KD ELF+ GD T IGERGIN+SGGQKQR+Q+ARA+YQDADIYLL
Sbjct: 711 MEKTKYKNVIQACSLKKDIELFSHGDQTIIGERGINLSGGQKQRVQLARALYQDADIYLL 770
Query: 781 DDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFE 840
DDPFSA+DAHTG+ LF+D ++ L +K+V++VTHQVEFLPAAD+ILV++ GRI Q+G+++
Sbjct: 771 DDPFSALDAHTGSDLFRDYILSALAEKTVVFVTHQVEFLPAADLILVLKEGRIIQSGKYD 830
Query: 841 ELLKQNIGFEVLVGAHSQALESVLTVETSSRTS-QDPTPESELNSDSTSNVKLVHSQHDS 899
+LL+ F+ LV AH +A+E++ SS S ++P +S + + S+V ++D
Sbjct: 831 DLLQAGTDFKALVSAHHEAIEAMDIPSPSSEDSDENPIRDSLVLHNPKSDV----FENDI 886
Query: 900 EHELSLEITEKGG--------------------KLVQEEEREKGSIGKEVYWSYLTAVKG 939
E L+ E+ E G +LVQEEER KG + +VY SY+ A
Sbjct: 887 E-TLAKEVQEGGSASDLKAIKEKKKKAKRSRKKQLVQEEERVKGKVSMKVYLSYMGAAYK 945
Query: 940 GALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVL 999
GAL+P+I+LAQ++FQ LQ+ASN+WMAWA+P T E + ++L+VYT L GSS+ +
Sbjct: 946 GALIPLIILAQAAFQFLQIASNWWMAWANPQTEGDESKVDPTLLLIVYTALAFGSSVFIF 1005
Query: 1000 LRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRL 1059
+RA LVA GL AQKLF NML SV RAPM+FFDSTP GRILNR S DQSV+DL++ RL
Sbjct: 1006 VRAALVATFGLAAAQKLFLNMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRL 1065
Query: 1060 GWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPI 1119
G A + IQ+ G + VM+ V WQVF++ +PV C W Q+YY+ ++REL R+ IQ++PI
Sbjct: 1066 GGFASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYMASSRELVRIVSIQKSPI 1125
Query: 1120 LHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVF 1179
+H F ES+AGAATI F QE RF NL L+D RP+F +++A+EWLC R+ LLS VF
Sbjct: 1126 IHLFGESIAGAATIRGFGQEKRFIKRNLYLLDCFVRPFFCSIAAIEWLCLRMELLSTLVF 1185
Query: 1180 AFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNL 1239
AF +V+LV+ P G I+PS+AGLAVTYG+NLN + I + C ENK+IS+ERI QYS +
Sbjct: 1186 AFCMVLLVSFPHGTIDPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIYQYSQI 1245
Query: 1240 PSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTG 1299
EAP + E+ RPPS+WP GTI ++++RYAE+LP+VL +SC FPG KK+G+VGRTG
Sbjct: 1246 VGEAPAIIEDFRPPSSWPATGTIELVDVKVRYAENLPTVLHGVSCVFPGGKKIGIVGRTG 1305
Query: 1300 SGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDP 1359
SGKSTLIQA+FR++EPT G I IDN+DI++IGLHDLRSRLGIIPQDPTLF+GT+R NLDP
Sbjct: 1306 SGKSTLIQALFRLIEPTAGKITIDNIDISQIGLHDLRSRLGIIPQDPTLFEGTIRANLDP 1365
Query: 1360 LVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSI 1419
L ++SD ++WEALDK QLGD+VR K+ KLDS V ENG+NWSVGQRQL LGR LLK++ I
Sbjct: 1366 LEEHSDDKIWEALDKSQLGDVVRGKDLKLDSPVLENGDNWSVGQRQLVSLGRALLKQAKI 1425
Query: 1420 LVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDS 1479
LVLDEATASVD+ATD +IQKII EF+D TV TIAHRI TVIDSDLVLVLSDGR+AE+D+
Sbjct: 1426 LVLDEATASVDTATDNLIQKIIRTEFEDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDT 1485
Query: 1480 PTKLLEREDSFFSQLIKEYSMRS 1502
P +LLE + S F +L+ EYS RS
Sbjct: 1486 PARLLEDKSSMFLKLVTEYSSRS 1508
|
Pump for glutathione S-conjugates. Involved in regulation of K(+) and Na(+) cell content. Mediates resistance to NaCl and Li(+), confers sensitivity to sulfonylurea drugs such as glibenclamide (inducer of stomatal opening), and required for stomatal opening regulation by auxin, abscisic acid (ABA) and external Ca(2+). Transports oestradiol-17-(beta-D-glucuronide) (E(2)17G). Involved in the root auxin content regulation that controls the transition from primary root elongation to lateral root formation. Plays a role in ABA-mediated germination inhibition. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1469 bits (3802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 739/1400 (52%), Positives = 1007/1400 (71%), Gaps = 29/1400 (2%)
Query: 123 IMQVVSWA--STLFLLCKIIPNSAHVKFPWILRAWWFCSFLFSILCTALHT-YLRIRYRG 179
++ +VSW S C+ + H K P++LR W F + C +L ++ R
Sbjct: 123 LLGMVSWGVLSICLHRCR---DCEHKKAPFLLRLW--LVFYLVVSCYSLVVDFVMYERRE 177
Query: 180 QFRIQDYV-DIIALLASTFLFGISIQGKTGLLLHTASSDTTEPFLN-----------VKA 227
+ V DI+A +A+ FL +++ K ++ EP LN V+
Sbjct: 178 TVPVHLLVFDIVAFIAAVFLGYVAVLKKDR---SNSNGVLEEPLLNGGDSRVGGDDSVEL 234
Query: 228 DKQFKSKRDSPYGKSTLLQLVTFSWLNPLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFE 287
+K S +PY ++ +L L+TFSW++PL +G KK L+L+D+P + DS L+ +F
Sbjct: 235 NKTNGSGEATPYSRAGILSLLTFSWMSPLIDIGNKKTLDLEDVPQLHDTDSVVGLAPKFR 294
Query: 288 QDLDLVK--EKEGSTNPSIYKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLT 345
L+ E+ G T + KA++F + + + A FA I SYVGP LI+ FV +L
Sbjct: 295 SMLESPDGGERSGVTTFKLIKALYFTAQWEILVTAFFAFIYTVASYVGPALIDTFVQYLN 354
Query: 346 DKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQ 405
++ + E GY+L + F AK+VE ++QR W F +++G+R+R+AL++ +Y KGL LS Q
Sbjct: 355 GRRQYNHE-GYVLVITFFAAKIVECLSQRHWFFRLQKVGIRMRSALVAMIYEKGLTLSCQ 413
Query: 406 SRQSHTSGEIINYMSVDVQRISDFIFYSNYMFMLPVQISLAIYILRTNLGLGSLAALAAT 465
S+Q TSGEIIN+M+VD +RI +F +Y + +M+ +Q+ LA++IL NLGL S+AAL AT
Sbjct: 414 SKQGRTSGEIINFMTVDAERIGNFSWYMHDPWMVLLQVGLALWILYRNLGLASIAALVAT 473
Query: 466 LTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQ 525
+ VM N P R+Q+RFQ K+M+AKD+RM++TSE+L+NM+ LKLQ W+ +FL K+ LR+
Sbjct: 474 IIVMLINFPFGRMQERFQEKLMEAKDSRMKSTSEILRNMRILKLQGWEMKFLSKIFDLRK 533
Query: 526 VECIWLWKSLRLSATSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDP 585
E WL K + SA +F+FWG+PT +SV TFGAC+LLGI L +G++LSALATFR+LQ+P
Sbjct: 534 SEEGWLKKYVYNSAVISFVFWGAPTLVSVSTFGACILLGIPLESGKILSALATFRILQEP 593
Query: 586 IFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPES 645
I+NLPD +S I Q KVS DR+A+YL D +Q D VE +PKG S+ VEV+N SW+ S
Sbjct: 594 IYNLPDTISMIVQTKVSLDRLASYLCLDNLQPDIVERLPKGSSDVAVEVINSTLSWDVSS 653
Query: 646 SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPW 705
S+PTL I KV GMKVA+CGTVGSGKSSLLS +LGE+ K++G++K+ GTKAYV QSPW
Sbjct: 654 SNPTLKDINFKVFPGMKVAVCGTVGSGKSSLLSSLLGEVPKVSGSLKVCGTKAYVAQSPW 713
Query: 706 ILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRI 765
I +G I +NILFG + +YD+ +EAC+L KD E+ + GD T IGERGIN+SGGQKQRI
Sbjct: 714 IQSGKIEDNILFGKPMERERYDKVLEACSLSKDLEILSFGDQTVIGERGINLSGGQKQRI 773
Query: 766 QIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADII 825
QIARA+YQDADIYL DDPFSAVDAHTG+ LFK+ L+G+L KSV+YVTHQVEFLPAAD+I
Sbjct: 774 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLCSKSVIYVTHQVEFLPAADLI 833
Query: 826 LVMENGRIAQAGRFEELLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPT-PESELNS 884
LVM++GRI+QAG++ ++L F L+GAH +AL V +V+ +S + + E+ +
Sbjct: 834 LVMKDGRISQAGKYNDILNSGTDFMELIGAHQEALAVVDSVDANSVSEKSALGQENVIVK 893
Query: 885 DSTSNVKLVHSQHDSEHELSLEITEKGGKLVQEEEREKGSIGKEVYWSYLTAVKGGALVP 944
D+ + + + SQ D +++ LE E +++QEEEREKGS+ +VYW Y+T GGALVP
Sbjct: 894 DAIAVDEKLESQ-DLKND-KLESVEPQRQIIQEEEREKGSVALDVYWKYITLAYGGALVP 951
Query: 945 IILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAML 1004
ILL Q FQ+LQ+ SNYWMAWA+P + D + + ++ +++VY L GSSLC+LLRA L
Sbjct: 952 FILLGQVLFQLLQIGSNYWMAWATPVSEDVQAPVKLSTLMIVYVALAFGSSLCILLRATL 1011
Query: 1005 VAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAF 1064
+ G +TA +LF M H + R+PM+FFDSTP+GRI++RAS DQS +DLEL + G A
Sbjct: 1012 LVTAGYKTATELFHKMHHCIFRSPMSFFDSTPSGRIMSRASTDQSAVDLELPYQFGSVAI 1071
Query: 1065 SIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFA 1124
++IQ++G IGVMSQV+W VF++FIPV IWYQ+YYI AREL+RL + +AP++ HF+
Sbjct: 1072 TVIQLIGIIGVMSQVSWLVFLVFIPVVAASIWYQRYYIAAARELSRLVGVCKAPLIQHFS 1131
Query: 1125 ESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLV 1184
E+++GA TI +F QE RF + N+ L D +SRP F+ AMEWLCFRL++LS+ F FSLV
Sbjct: 1132 ETISGATTIRSFSQEFRFRSDNMRLSDGYSRPKFYTAGAMEWLCFRLDMLSSLTFVFSLV 1191
Query: 1185 VLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAP 1244
LV++P G+I+PS+AGLAVTYG++LN LQA +IW +CN ENK+ISVERILQY+++PSE P
Sbjct: 1192 FLVSIPTGVIDPSLAGLAVTYGLSLNTLQAWLIWTLCNLENKIISVERILQYASVPSEPP 1251
Query: 1245 LVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKST 1304
LV E RP +WP G + +LQ+RYA H+P VL+ I+CTF G + G+VGRTGSGKST
Sbjct: 1252 LVIESNRPEQSWPSRGEVEIRDLQVRYAPHMPLVLRGITCTFKGGLRTGIVGRTGSGKST 1311
Query: 1305 LIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYS 1364
LIQ +FRIVEP+ G I ID V+I IGLHDLR RL IIPQDPT+F+GT+R NLDPL +Y+
Sbjct: 1312 LIQTLFRIVEPSAGEIRIDGVNILTIGLHDLRLRLSIIPQDPTMFEGTMRSNLDPLEEYT 1371
Query: 1365 DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDE 1424
D Q+WEALDKCQLGD VR KE+KLDS+V+ENG+NWS+GQRQL CLGR LLK+S ILVLDE
Sbjct: 1372 DDQIWEALDKCQLGDEVRKKEQKLDSSVSENGDNWSMGQRQLVCLGRVLLKRSKILVLDE 1431
Query: 1425 ATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLL 1484
ATASVD+ATD +IQK + + F D TV+TIAHRI +VIDSD+VL+LS+G I EYD+P +LL
Sbjct: 1432 ATASVDTATDNLIQKTLREHFSDCTVITIAHRISSVIDSDMVLLLSNGIIEEYDTPVRLL 1491
Query: 1485 EREDSFFSQLIKEYSMRSQN 1504
E + S FS+L+ EY+ RS +
Sbjct: 1492 EDKSSSFSKLVAEYTSRSSS 1511
|
Pump for glutathione S-conjugates. Mediates the transport of glutathione conjugates such as chlorodinitrobenzene-GS (DNB-GS), and of chlorophyll catabolites such as Bn-NCC-1. Transports also heavy metals such as cadmium (Cd). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8VZZ4|AB6C_ARATH ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 1404 bits (3634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 713/1394 (51%), Positives = 946/1394 (67%), Gaps = 33/1394 (2%)
Query: 119 FSSRIMQVVSWASTLFLLCKIIPNSAHVKFPWILRAWWFCSFLFSILCTALHTYLRIRYR 178
F ++ ++W S L NS K ++LR WW F F + C L + Y+
Sbjct: 93 FLDLLLAALTWGSISVYLFGRYTNSCEQKVLFLLRVWWV--FFFVVSCYHLVVDF-VLYK 149
Query: 179 GQ------FRIQDYVDIIA--LLASTFLFGISIQGKTGLLLHTASSDTTEPFLNVKADKQ 230
Q F I D V + A L + L+ + LL EP L+ A+
Sbjct: 150 KQEMVSVHFVISDLVGVCAGLFLCCSCLWKKGEGERIDLL--------KEPLLS-SAESS 200
Query: 231 FKSKRDSPYGKSTLLQLVTFSWLNPLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDL 290
+ +P+ K+ +L ++FSW++PL +G +K +++ D+P +D D+ E L F L
Sbjct: 201 DNEEVTAPFSKAGILSRMSFSWMSPLITLGNEKIIDIKDVPQLDRSDTTESLFWIFRSKL 260
Query: 291 DLVKEKEGSTNPSIYKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSR 350
+ + T + KA+F + + ++A A + + YV PYL+++FV +L +
Sbjct: 261 EWDDGERRITTFKLIKALFLSVWRDIVLSALLAFVYTVSCYVAPYLMDNFVQYLNGNRQY 320
Query: 351 SLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSH 410
GY+L F AK+VE QRQW F ++ GL +R+ L+S +Y KGL L S+Q H
Sbjct: 321 K-NQGYVLVTTFFVAKLVECQTQRQWFFRGQKAGLGMRSVLVSMIYEKGLTLPCHSKQGH 379
Query: 411 TSGEIINYMSVDVQRISDFIFYSNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMT 470
TSGEIIN M+VD RIS F ++ + ++L +Q+SLA++IL +LGLGS+AA AT+ VM
Sbjct: 380 TSGEIINLMAVDADRISAFSWFMHDPWILVLQVSLALWILYKSLGLGSIAAFPATILVML 439
Query: 471 CNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIW 530
N P +++++FQS +M +KDNRM+ TSEVL NMK LKLQ W+ +FL K+ LR +E W
Sbjct: 440 ANYPFAKLEEKFQSSLMKSKDNRMKKTSEVLLNMKILKLQGWEMKFLSKILELRHIEAGW 499
Query: 531 LWKSLRLSATSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLP 590
L K + S+ + W +P+FIS FGAC+LL I L +G++L+ALATFR+LQ PI+ LP
Sbjct: 500 LKKFVYNSSAINSVLWAAPSFISATAFGACLLLKIPLESGKILAALATFRILQGPIYKLP 559
Query: 591 DLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTL 650
+ +S I Q KVS +RIA++L D++Q+D V +P G SE VE+ NG FSW+ S PTL
Sbjct: 560 ETISMIVQTKVSLNRIASFLCLDDLQQDVVGRLPSGSSEMAVEISNGTFSWDDSSPIPTL 619
Query: 651 DGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGN 710
+ KV +GM VAICGTVGSGKSSLLS ILGE+ K++G +K+ G KAY+ QSPWI +G
Sbjct: 620 RDMNFKVSQGMNVAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSPWIQSGK 679
Query: 711 IRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARA 770
+ ENILFG + YDR +EAC+L KD E+ D T IGERGIN+SGGQKQRIQIARA
Sbjct: 680 VEENILFGKPMEREWYDRVLEACSLNKDLEILPFHDQTVIGERGINLSGGQKQRIQIARA 739
Query: 771 VYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMEN 830
+YQDADIYL DDPFSAVDAHTG+ LFK+ L+G+L+ K+V+YVTHQVEFLP AD+ILVM++
Sbjct: 740 LYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLILVMKD 799
Query: 831 GRIAQAGRFEELLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNV 890
G+I QAG++ E+L F LVGAH++AL ++ + ET + + T D + V
Sbjct: 800 GKITQAGKYHEILDSGTDFMELVGAHTEALATIDSCETGYASEKSTT-------DKENEV 852
Query: 891 KLVHSQHDSEHELSLEITEKGGKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQ 950
H E + + + G+LVQEEEREKG +G VY Y+ GGA++P+IL+ Q
Sbjct: 853 -----LHHKEKQENGSDNKPSGQLVQEEEREKGKVGFTVYKKYMALAYGGAVIPLILVVQ 907
Query: 951 SSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGL 1010
FQ+L + SNYWM W +P + D EP + ++LVY LL V SS C+L+RA+LVA+TG
Sbjct: 908 VLFQLLSIGSNYWMTWVTPVSKDVEPPVSGFTLILVYVLLAVASSFCILIRALLVAMTGF 967
Query: 1011 RTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQIL 1070
+ A +LFT M + RA M+FFD+TP GRILNRAS DQSV DL L G+ + A + I IL
Sbjct: 968 KMATELFTQMHLRIFRASMSFFDATPMGRILNRASTDQSVADLRLPGQFAYVAIAAINIL 1027
Query: 1071 GTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGA 1130
G IGV+ QVAWQV ++FIPV C WY+QYYI ARELARLA I R+P++HHF+E+L+G
Sbjct: 1028 GIIGVIVQVAWQVLIVFIPVVAACAWYRQYYISAARELARLAGISRSPVVHHFSETLSGI 1087
Query: 1131 ATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLP 1190
TI +FDQE RF + L D +SR FH+ AMEWLCFRL LLS F FA SLV+LV+ P
Sbjct: 1088 TTIRSFDQEPRFRGDIMRLSDCYSRLKFHSTGAMEWLCFRLELLSTFAFASSLVILVSAP 1147
Query: 1191 EGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEEC 1250
EG+INPS+AGLA+TY +NLN LQA++IW +C+ ENKMISVER+LQY+N+PSE PLV E
Sbjct: 1148 EGVINPSLAGLAITYALNLNTLQATLIWTLCDLENKMISVERMLQYTNIPSEPPLVIETT 1207
Query: 1251 RPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIF 1310
RP +WP G I+ NLQ+RY HLP VL ++CTFPG K G+VGRTG GKSTLIQ +F
Sbjct: 1208 RPEKSWPSRGEITICNLQVRYGPHLPMVLHGLTCTFPGGLKTGIVGRTGCGKSTLIQTLF 1267
Query: 1311 RIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWE 1370
RIVEP G I ID ++I IGLHDLRSRL IIPQDPT+F+GT+R NLDPL +Y+D Q+WE
Sbjct: 1268 RIVEPAAGEIRIDGINILSIGLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEEYTDDQIWE 1327
Query: 1371 ALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD 1430
ALD CQLGD VR KE KLDS V+ENG+NWSVGQRQL CLGR LLK+S +LVLDEATAS+D
Sbjct: 1328 ALDNCQLGDEVRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKLLVLDEATASID 1387
Query: 1431 SATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSF 1490
+ATD +IQ+ + F D TV+TIAHRI +VIDSD+VL+L G I E+DSP +LLE S
Sbjct: 1388 TATDNLIQETLRHHFADCTVITIAHRISSVIDSDMVLLLDQGLIKEHDSPARLLEDRSSL 1447
Query: 1491 FSQLIKEYSMRSQN 1504
FS+L+ EY+ S++
Sbjct: 1448 FSKLVAEYTTSSES 1461
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LK62|AB7C_ARATH ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1391 bits (3601), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 710/1393 (50%), Positives = 950/1393 (68%), Gaps = 29/1393 (2%)
Query: 123 IMQVVSWASTLFLLCKIIPNSAHVKFPWILRAWWFCSFLFSILCTALHTYLRIRYRGQFR 182
+ +SW + F + S KFP +LR WW F+FS C L + + Y+ Q
Sbjct: 109 LFTALSWGAISFYIRSQFTYSHDQKFPILLRVWWVLYFMFS--CYRLLVDIAL-YKKQEL 165
Query: 183 IQDYV---DIIALLASTFLFGISIQGK-------TGLLLHTASSDTTEPFLNVKADKQFK 232
+ ++ D++A+ FL +Q + L + + +V+ DK
Sbjct: 166 VSVHLLLSDVLAVSVGLFLCYSCLQKQGQGERINLLLEEPLLNGAESSAATSVQLDKAED 225
Query: 233 SKRDSPYGKSTLLQLVTFSWLNPLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLDL 292
+ +P+ + L V+FSW++PL +G +K ++ +D+P VD D AE L F L+
Sbjct: 226 DEVVTPFSNAGFLSHVSFSWMSPLIVLGNEKIIDSEDVPQVDNSDRAEKLFWIFRSKLEW 285
Query: 293 VKEKEGSTNPSIYKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSL 352
+ T + KA+FF + + ++ FA + + YV PYL++ FV +L ++ S
Sbjct: 286 DDGERRITTYKLIKALFFSVWRDILLSTLFAFVYTVSCYVAPYLMDTFVQYLNGQRQYS- 344
Query: 353 ESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTS 412
G +L F AK+VE A+R W F ++ G+ +R+ L+S +Y KGL L S+Q HTS
Sbjct: 345 NQGVVLVTTFFVAKLVECQARRNWYFRLQKAGIGMRSVLVSMIYEKGLTLPCYSKQGHTS 404
Query: 413 GEIINYMSVDVQRISDFIFYSNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTCN 472
GEIIN M+VD +RIS F +Y + ++L +QISLA+ IL +LGLGS+AA AAT VM N
Sbjct: 405 GEIINLMTVDAERISAFSWYMHDPWILVLQISLALLILYRSLGLGSIAAFAATFLVMLGN 464
Query: 473 IPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLW 532
IP+ +++++FQ +M++KDNRM+ TSE L NM+ LKLQ W+ +FL K+ LR +E WL
Sbjct: 465 IPLAKLEEKFQGNLMESKDNRMKKTSEALLNMRILKLQGWEMKFLHKILDLRGIEAGWLK 524
Query: 533 KSLRLSATSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDL 592
K + SA + + W +P+F+S FGACMLL I L +G++++ALATFR+LQ PI+ LPD
Sbjct: 525 KFVYNSAAISSVLWAAPSFVSATAFGACMLLKIPLESGKIIAALATFRILQTPIYKLPDT 584
Query: 593 LSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDG 652
+S I Q KVS DRIA +L D++Q+D +E +P G S+ +VEV NG FSW+ S PTL
Sbjct: 585 ISMIVQTKVSLDRIATFLCLDDLQQDGMERLPSGSSKMDVEVSNGAFSWDDSSPIPTLKD 644
Query: 653 IQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIR 712
I+ K+ GM +AICGTVGSGKSSLLS ILGE+ K++G +K+ G KAY+ QSPWI +G +
Sbjct: 645 IRFKIPHGMNIAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVE 704
Query: 713 ENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVY 772
ENILFG Y R +EAC+L KD E+F D T IGERGIN+SGGQKQRIQIARA+Y
Sbjct: 705 ENILFGKPMQREWYQRVLEACSLNKDLEVFPFRDQTVIGERGINLSGGQKQRIQIARALY 764
Query: 773 QDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGR 832
QDADIYL DDPFSAVDAHTG+ LFK+ L+G+L++K+V+YVTHQ+EFLP AD+ILVM++GR
Sbjct: 765 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRNKTVIYVTHQLEFLPEADLILVMKDGR 824
Query: 833 IAQAGRFEELLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPT-PESELNSDSTSNVK 891
I QAG++ E+L+ F LVGAH+ AL +V + E S ++Q T ES++++D
Sbjct: 825 ITQAGKYNEILESGTDFMELVGAHTDALAAVDSYEKGSASAQSTTSKESKVSND------ 878
Query: 892 LVHSQHDSEHELSLEITEKGGKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQS 951
E + ++ G+LVQEEEREKG +G VY Y+ GGALVPIIL+ Q
Sbjct: 879 --------EEKQEEDLPSPKGQLVQEEEREKGKVGFTVYQKYMKLAYGGALVPIILVVQI 930
Query: 952 SFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLR 1011
FQVL + SNYWMAW +P + D +P + + ++LVY L SS C+L+RAML A+TG +
Sbjct: 931 LFQVLNIGSNYWMAWVTPVSKDVKPLVSGSTLILVYVFLATASSFCILVRAMLSAMTGFK 990
Query: 1012 TAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILG 1071
A +LF M + RA M+FFD+TP GRILNRAS DQS +DL L + A + + ILG
Sbjct: 991 IATELFNQMHFRIFRASMSFFDATPIGRILNRASTDQSAVDLRLPSQFSNLAIAAVNILG 1050
Query: 1072 TIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAA 1131
IGVM QVAWQV ++FIPV C WY+QYYI ARELARL+ I R+P++ HF+E+L+G
Sbjct: 1051 IIGVMGQVAWQVLIVFIPVIAACTWYRQYYISAARELARLSGISRSPLVQHFSETLSGIT 1110
Query: 1132 TIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPE 1191
TI +FDQE RF + L D +SR FH +SAMEWLCFRL+LLS FA SLV+LV++PE
Sbjct: 1111 TIRSFDQEPRFRTDIMRLNDCYSRLRFHAISAMEWLCFRLDLLSTVAFALSLVILVSVPE 1170
Query: 1192 GIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECR 1251
G+INPS AGLAVTY +NLN LQA++IW +C+ ENKMISVER+LQY ++PSE LV E R
Sbjct: 1171 GVINPSFAGLAVTYALNLNSLQATLIWTLCDLENKMISVERMLQYIDIPSEPSLVIESTR 1230
Query: 1252 PPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFR 1311
P +WP G I+ NLQ+RY HLP VL+ ++CTF G K G+VGRTG GKSTLIQ +FR
Sbjct: 1231 PEKSWPCRGEITICNLQVRYGPHLPMVLRGLTCTFRGGLKTGIVGRTGCGKSTLIQTLFR 1290
Query: 1312 IVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEA 1371
IVEP G I ID ++I IGLHDLRSRL IIPQ+PT+F+GTVR NLDPL +Y+D Q+WEA
Sbjct: 1291 IVEPAAGEIRIDGINILTIGLHDLRSRLSIIPQEPTMFEGTVRSNLDPLEEYADDQIWEA 1350
Query: 1372 LDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDS 1431
LDKCQLGD +R KE KLDS V+ENG+NWSVGQRQL CLGR LLK+S +L+LDEATASVD+
Sbjct: 1351 LDKCQLGDEIRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKVLILDEATASVDT 1410
Query: 1432 ATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFF 1491
ATD +IQ+ + Q F TV+TIAHRI +VIDSD+VL+L G I E+DSP +LLE + S F
Sbjct: 1411 ATDTLIQETLRQHFSGCTVITIAHRISSVIDSDMVLLLDQGLIEEHDSPARLLEDKSSSF 1470
Query: 1492 SQLIKEYSMRSQN 1504
S+L+ EY+ S +
Sbjct: 1471 SKLVAEYTASSDS 1483
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LYS2|AB10C_ARATH ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1091 bits (2821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/1312 (44%), Positives = 827/1312 (63%), Gaps = 46/1312 (3%)
Query: 212 HTASSDTTEPFLNVKADKQFKSKRD-----SPYGKSTLLQLVTFSWLNPLFAVGIKKPLE 266
+ S EP LN F K D S + K+ L ++F WLN L G K LE
Sbjct: 176 ESGESSLYEP-LNAGDSNGFSEKADFDNRVSQFAKAGLFSTLSFWWLNSLIKRGNVKDLE 234
Query: 267 LDDIPDVDIKDSAEFLSNRFEQDLDLVKEKEGST-NPSIYKAIFFFIRKKAAINASFAVI 325
+DIP++ ++ AE + FE++L K + GS+ PSI K + ++ + FA +
Sbjct: 235 EEDIPELRKEERAETCYSLFEENLIEQKRRLGSSCQPSILKVTVLCVWRELLTSGFFAFM 294
Query: 326 NAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGL 385
GP L+N F+ S E G +LA+ +KM+E+++QRQW F R +GL
Sbjct: 295 KIVAVSAGPLLLNAFILVAEGNASFRYE-GLVLAVLLFFSKMIESLSQRQWYFRCRIVGL 353
Query: 386 RLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMFMLPVQISL 445
R+R+ L + + +K L L++ SR H+ EI+NY +VD RI +F ++ + ++ Q+ +
Sbjct: 354 RVRSLLTAAINKKQLRLNNSSRLIHSGSEIMNYATVDAYRIGEFPYWFHQLWTTSFQLLI 413
Query: 446 AIYILRTNLGLGSLAALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMK 505
A+ IL ++G+ + +ALA + + CN PI ++Q +FQS++M ++D R++A +E L NMK
Sbjct: 414 ALGILFHSVGVATFSALAVIILTVLCNAPIAKLQNKFQSELMTSQDERLKACNESLVNMK 473
Query: 506 TLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWGSPTFISVVTFGACMLLGI 565
LKL AW++ F + +E LR +E L A +A +FW SP F+S TF C L I
Sbjct: 474 VLKLYAWESHFKKVIEKLRNIELKSLKAVQMRKAYNAVLFWSSPVFVSAATFATCYFLDI 533
Query: 566 QLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPK 625
L A V + +AT R++QDP+ +PD++ Q KV+ RIA +L+ E+Q E K
Sbjct: 534 PLRASNVFTFVATLRLVQDPVRMIPDVIGVTIQAKVAFSRIATFLEAPELQ--GGERRRK 591
Query: 626 GRSEFEVEVV---NGKFSWNPE-SSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCIL 681
RSE + + FSW + S+ P L + L+VK G KVA+CG VGSGKS+LL+ IL
Sbjct: 592 QRSEGNQNAIIIKSASFSWEEKGSTKPNLRNVSLEVKFGEKVAVCGEVGSGKSTLLAAIL 651
Query: 682 GEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFEL 741
GE ++GT+ GT AYV Q+ WI TG IR+NILFG D +Y T++ +L KD EL
Sbjct: 652 GETPCVSGTIDFYGTIAYVSQTAWIQTGTIRDNILFGGVMDEHRYRETIQKSSLDKDLEL 711
Query: 742 FASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLM 801
GD TEIGERG+N+SGGQKQRIQ+ARA+YQDADIYLLDDPFSAVDAHT + LF++ +M
Sbjct: 712 LPDGDQTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFQEYVM 771
Query: 802 GILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGAHSQAL- 860
L K+VL VTHQV+FLPA D +L+M +G I +A ++ELL ++ F+ LV AH +
Sbjct: 772 DALAGKAVLLVTHQVDFLPAFDSVLLMSDGEITEADTYQELLARSRDFQDLVNAHRETAG 831
Query: 861 -ESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGGKLVQEEE 919
E V+ VE ++ P E+N +S K++ K +L+++EE
Sbjct: 832 SERVVAVENPTK------PVKEINRVISSQSKVL----------------KPSRLIKQEE 869
Query: 920 REKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALG 979
REKG G Y Y+ KG I LAQ +F V Q+ N WMA + P +
Sbjct: 870 REKGDTGLRPYIQYMNQNKGYIFFFIASLAQVTFAVGQILQNSWMA-----ANVDNPQVS 924
Query: 980 MNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGR 1039
++LVY L+ + S LC+++R++ V I ++++ LF+ +L+S+ RAPM+F+DSTP GR
Sbjct: 925 TLKLILVYLLIGLCSVLCLMVRSVCVVIMCMKSSASLFSQLLNSLFRAPMSFYDSTPLGR 984
Query: 1040 ILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQ 1099
IL+R S+D S++DL++ L + S + ++GV++ V WQV + +P+ + Q+
Sbjct: 985 ILSRVSSDLSIVDLDVPFGLIFVVASSVNTGCSLGVLAIVTWQVLFVSVPMVYLAFRLQK 1044
Query: 1100 YYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFH 1159
YY TA+EL R+ R+ + +H AES+AGA TI AFD+E+RF +L+LID ++ P+FH
Sbjct: 1045 YYFQTAKELMRINGTTRSYVANHLAESVAGAITIRAFDEEERFFKKSLTLIDTNASPFFH 1104
Query: 1160 NVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWN 1219
+ +A EWL RL +S V A + ++ LP G + G+A++YG++LN+ + N
Sbjct: 1105 SFAANEWLIQRLETVSAIVLASTAFCMILLPTGTFSSGFIGMALSYGLSLNMGLVYSVQN 1164
Query: 1220 ICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVL 1279
C N +ISVER+ QY++L EAP V EE RPP NWP G + +LQIRY P VL
Sbjct: 1165 QCYLANWIISVERLNQYTHLTPEAPEVIEETRPPVNWPVTGRVEISDLQIRYRRESPLVL 1224
Query: 1280 KNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339
K ISCTF G K+G+VGRTGSGK+TLI A+FR+VEP G I++D VDI+KIG+HDLRSR
Sbjct: 1225 KGISCTFEGGHKIGIVGRTGSGKTTLISALFRLVEPVGGKIVVDGVDISKIGVHDLRSRF 1284
Query: 1340 GIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENW 1399
GIIPQDPTLF+GTVR NLDPL Q+SD ++WE L KCQL ++V+ KE LDS V E+G NW
Sbjct: 1285 GIIPQDPTLFNGTVRFNLDPLCQHSDAEIWEVLGKCQLKEVVQEKENGLDSLVVEDGSNW 1344
Query: 1400 SVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHT 1459
S+GQRQLFCLGR +L++S +LVLDEATAS+D+ATD ++QK I +EF D TV+T+AHRI T
Sbjct: 1345 SMGQRQLFCLGRAVLRRSRVLVLDEATASIDNATDLILQKTIRREFADCTVITVAHRIPT 1404
Query: 1460 VIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMRSQNFNSVAGR 1511
V+D +VL +SDGRI EYD P KL++ E+S F +L+KEY ++NS R
Sbjct: 1405 VMDCTMVLSISDGRIVEYDEPMKLMKDENSLFGKLVKEY---WSHYNSADSR 1453
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LZJ5|AB14C_ARATH ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1080 bits (2792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/1390 (41%), Positives = 853/1390 (61%), Gaps = 49/1390 (3%)
Query: 149 PWILRAWWFCSFLFSILCTA---LHTYLRIRYRGQFRIQDYVDIIALLASTFLFGISIQG 205
P LR +W +F+ + L T LH R D I+ + L +SI+G
Sbjct: 160 PLTLRIYWVFNFVVTTLFTVSGILHLLSDDPAAASLRADDVASFISFPLTAVLLLVSIKG 219
Query: 206 KTGLLLHTASSDTTEPFLNVKADKQF--KSKRDSPYGKSTLLQLVTFSWLNPLFAVGIKK 263
TG+++ T S+ T P K++ KS+ S Y ++ + + W+NPL G K
Sbjct: 220 STGVVVTT--SNVTAP---AKSNDVVVEKSENVSLYASASFISKTFWLWMNPLLRKGYKS 274
Query: 264 PLELDDIPDVDIKDSAEFLSNRFEQDLDLVKEKEGSTNPSIYKAIFFFIRKKAAINASFA 323
PL LD +P + + AE L+ FE K +E S NP I F K+ A A A
Sbjct: 275 PLNLDQVPTLSPEHRAEKLATLFESKWP--KPQENSRNPVRTTLIRCF-WKEIAFTAVLA 331
Query: 324 VINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQL 383
+I + YVGP LI FV+F + K+S S GY L L L AK VE ++ Q+ F +++L
Sbjct: 332 IIRLSVIYVGPVLIQSFVDFTSGKRS-SPSQGYYLVLILLIAKFVEVLSTHQFNFNSQKL 390
Query: 384 GLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMFMLPVQI 443
G+ +R+ LI+ LY+KGL L+ +RQ+H G+I+NYM+VD Q++SD + + ++++P+Q+
Sbjct: 391 GMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQV 450
Query: 444 SLAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKN 503
+ AI +L LG + + + + T+ R+Q +M +D+RM+AT+E+L
Sbjct: 451 AAAIVLLYNTLGPSVVTTVIGLTGIFVFILLGTKRNNRYQFSLMMNRDSRMKATNEMLNY 510
Query: 504 MKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWGSPTFISVVTFGACMLL 563
M+ +K QAW+ F +++ R++E WL K L A + + W +P IS +TF + L
Sbjct: 511 MRVIKFQAWEDHFNERILKFREMEFGWLSKFLYSIAGNIIVLWSTPVLISALTFTTAVFL 570
Query: 564 GIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYV 623
G++L AG V + F++LQ+PI P + +++Q +S R+ AY+ E+ + VE
Sbjct: 571 GVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDAYMMSRELSEETVERS 630
Query: 624 PKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGE 683
VE+ +G FSW+ E P ++ I +VK+G AI GTVGSGKSSLL+ +LGE
Sbjct: 631 QGCDGNVAVEIKDGSFSWDDEDDEPAIENINFEVKKGELAAIVGTVGSGKSSLLASVLGE 690
Query: 684 IQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFA 743
+ K++G V++ GT AYV Q+ WI G +++NILFG + KY+ ++ C L KD ++
Sbjct: 691 MHKLSGKVRVCGTTAYVAQTSWIQNGTVQDNILFGLPMNRSKYNEVLKVCCLEKDMQIME 750
Query: 744 SGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI 803
GD TEIGERGIN+SGGQKQRIQ+ARAVYQ++D+YLLDD FSAVDAHTG+ +FK C+ G
Sbjct: 751 FGDQTEIGERGINLSGGQKQRIQLARAVYQESDVYLLDDVFSAVDAHTGSDIFKKCVRGA 810
Query: 804 LKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGAHSQALESV 863
LK K++L VTHQV+FL D ILVM +G I Q+G+++EL+ + F LV AH ++E V
Sbjct: 811 LKGKTILLVTHQVDFLHNVDRILVMRDGMIVQSGKYDELVSSGLDFGELVAAHETSMELV 870
Query: 864 ----------------------LTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEH 901
+++E S R + P + +S ++ +
Sbjct: 871 EAGSASATAANVPMASPITQRSISIE-SPRQPKSPKVHRTTSMESPRVLRTTSMESPRLS 929
Query: 902 ELSLE---------ITEKGGKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSS 952
EL+ E I E G +L++EEERE G + +VY Y T G + +++ +
Sbjct: 930 ELNDESIKSFLGSNIPEDGSRLIKEEEREVGQVSFQVYKLYSTEAYGWWGMILVVFFSVA 989
Query: 953 FQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRT 1012
+Q +AS+YW+A+ + ++ E + + + VY ++ S + V LRA V GL+T
Sbjct: 990 WQASLMASDYWLAYET--SAKNEVSFDATVFIRVYVIIAAVSIVLVCLRAFYVTHLGLKT 1047
Query: 1013 AQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGT 1072
AQ F +L+S+ APM+FFD+TP+GRIL+RAS DQ+ +D+ + +G A +L
Sbjct: 1048 AQIFFKQILNSLVHAPMSFFDTTPSGRILSRASTDQTNVDIFIPFMIGLVATMYTTLLSI 1107
Query: 1073 IGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAAT 1132
V Q AW IP+ + IWY+ YY+ ++REL RL I +AP++HHF+ES+AG T
Sbjct: 1108 FIVTCQYAWPTVFFIIPLGWLNIWYRGYYLASSRELTRLDSITKAPVIHHFSESIAGVMT 1167
Query: 1133 IHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEG 1192
I AF ++ F N+ ++ + R FHN + EWL FRL L+ ++V S + +V LP
Sbjct: 1168 IRAFKKQPMFRQENVKRVNANLRMDFHNNGSNEWLGFRLELIGSWVLCISALFMVMLPSN 1227
Query: 1193 IINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRP 1252
II P GL+++YG++LN + I+ C ENKM+SVERI Q++++P+EA +E RP
Sbjct: 1228 IIKPENVGLSLSYGLSLNGVLFWAIYLSCFIENKMVSVERIKQFTDIPAEAKWEIKESRP 1287
Query: 1253 PSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRI 1312
P NWP G I ++++RY + P VLK ++ G +K+GVVGRTGSGKSTLIQ +FR+
Sbjct: 1288 PPNWPYKGNIRLEDVKVRYRPNTPLVLKGLTIDIKGGEKIGVVGRTGSGKSTLIQVLFRL 1347
Query: 1313 VEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEAL 1372
VEP+ G IIID +DI +GLHDLRSR GIIPQ+P LF+GTVR N+DP +YSD+++W++L
Sbjct: 1348 VEPSGGKIIIDGIDICTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEKYSDEEIWKSL 1407
Query: 1373 DKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSA 1432
++CQL D+V +K EKLDS VA+NGENWSVGQRQL CLGR +LK+S IL LDEATASVDS
Sbjct: 1408 ERCQLKDVVASKPEKLDSLVADNGENWSVGQRQLLCLGRVMLKRSRILFLDEATASVDSQ 1467
Query: 1433 TDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFS 1492
TD +IQKII ++F D T+++IAHRI TV+D D VLV+ G+ EYDSP +LLER+ S F+
Sbjct: 1468 TDAMIQKIIREDFSDCTIISIAHRIPTVMDCDRVLVIDAGKAKEYDSPVRLLERQ-SLFA 1526
Query: 1493 QLIKEYSMRS 1502
L++EY++RS
Sbjct: 1527 ALVQEYALRS 1536
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7DM58|AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1077 bits (2784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/1367 (41%), Positives = 847/1367 (61%), Gaps = 21/1367 (1%)
Query: 144 AHVKFPWILRAWWFCSFLFSIL--CTALHTYLRIRYRGQFRIQDYVDIIALLASTFLFGI 201
A + P LR +W SF+ + L T + +L R +D + + FL
Sbjct: 160 AALNHPLSLRIYWISSFVLTSLFAVTGIFHFLS-DAATSLRAEDVASFFSFPLTAFLLIA 218
Query: 202 SIQGKTGLLLHTASSDTTEPFLNVKADKQFKSKRDSPYGKSTLLQLVTFSWLNPLFAVGI 261
S++G TGL+ +++T P A KS S Y +++ + W+NPL + G
Sbjct: 219 SVRGITGLV----TAETNSPTKPSDAVSVEKSDNVSLYASASVFSKTFWLWMNPLLSKGY 274
Query: 262 KKPLELDDIPDVDIKDSAEFLSNRFEQDLDLVKEKEGSTNPSIYKAIFFFIRKKAAINAS 321
K PL L+ +P + + AE L+ FE K E S++P I + K+ A
Sbjct: 275 KSPLTLEQVPTLSPEHKAERLALLFESSWP--KPSENSSHP-IRTTLLRCFWKEILFTAI 331
Query: 322 FAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGAR 381
A++ YVGP LI FV+F + K+S + GY L L L AK VE + Q+ F ++
Sbjct: 332 LAIVRLGVMYVGPVLIQSFVDFTSGKRSSPWQ-GYYLVLILLVAKFVEVLTTHQFNFDSQ 390
Query: 382 QLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMFMLPV 441
+LG+ +R+ LI+ LY+KGL L+ +RQ+H G+I+NYM+VD Q++SD + + ++++P+
Sbjct: 391 KLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPL 450
Query: 442 QISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVL 501
Q+++A+ +L +LG + A+ V + T+ +Q +M +D+RM+AT+E+L
Sbjct: 451 QVTVALVLLYGSLGASVITAVIGLTGVFVFILLGTQRNNGYQFSLMGNRDSRMKATNEML 510
Query: 502 KNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWGSPTFISVVTFGACM 561
M+ +K QAW+ F +++ R +E WL K L A + + W +P IS +TF +
Sbjct: 511 NYMRVIKFQAWENHFNKRILKFRDMEFGWLSKFLYSIAGNIIVLWSTPVLISALTFATAL 570
Query: 562 LLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVE 621
LG++L AG V + F++LQ+PI P + +++Q +S R+ +Y+ E+ DAVE
Sbjct: 571 ALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDSYMMSKELSEDAVE 630
Query: 622 YVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCIL 681
VEV +G FSW+ E + P L I KVK+G AI GTVGSGKSSLL+ +L
Sbjct: 631 RALGCDGNTAVEVRDGSFSWDDEDNEPALSDINFKVKKGELTAIVGTVGSGKSSLLASVL 690
Query: 682 GEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFEL 741
GE+ +++G V++ G+ YV Q+ WI G +++NILFG KY++ + C+L KD ++
Sbjct: 691 GEMHRISGQVRVCGSTGYVAQTSWIENGTVQDNILFGLPMVREKYNKVLNVCSLEKDLQM 750
Query: 742 FASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLM 801
GD TEIGERGIN+SGGQKQRIQ+ARAVYQ+ D+YLLDD FSAVDAHTG+ +FK C+
Sbjct: 751 MEFGDKTEIGERGINLSGGQKQRIQLARAVYQECDVYLLDDVFSAVDAHTGSDIFKKCVR 810
Query: 802 GILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGAHSQALE 861
G LK K+VL VTHQV+FL D ILVM +G+I ++G+++EL+ + F LV AH ++E
Sbjct: 811 GALKGKTVLLVTHQVDFLHNVDCILVMRDGKIVESGKYDELVSSGLDFGELVAAHETSME 870
Query: 862 SV------LTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGGKLV 915
V V TS RT P S S + ++ ++ +H L I E G KL+
Sbjct: 871 LVEAGADSAAVATSPRTPTSPHASSPRTSMESPHLSDLNDEHIKSF-LGSHIVEDGSKLI 929
Query: 916 QEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGE 975
+EEERE G + VY Y T G + ++L ++Q +AS+YW+A+ + ++
Sbjct: 930 KEEERETGQVSLGVYKQYCTEAYGWWGIVLVLFFSLTWQGSLMASDYWLAYET--SAKNA 987
Query: 976 PALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDST 1035
+ ++ +L Y ++ + S + V +R+ V GL+TAQ F +L+S+ APM+FFD+T
Sbjct: 988 ISFDASVFILGYVIIALVSIVLVSIRSYYVTHLGLKTAQIFFRQILNSILHAPMSFFDTT 1047
Query: 1036 PTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICI 1095
P+GRIL+RAS DQ+ +D+ + LG +L V Q AW IP+ + I
Sbjct: 1048 PSGRILSRASTDQTNVDILIPFMLGLVVSMYTTLLSIFIVTCQYAWPTAFFVIPLGWLNI 1107
Query: 1096 WYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSR 1155
WY+ YY+ ++REL R+ I +API+HHF+ES+AG TI +F +++ F N+ ++++ R
Sbjct: 1108 WYRNYYLASSRELTRMDSITKAPIIHHFSESIAGVMTIRSFRKQELFRQENVKRVNDNLR 1167
Query: 1156 PWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQAS 1215
FHN + EWL FRL L+ ++V S + +V LP +I P GL+++YG++LN +
Sbjct: 1168 MDFHNNGSNEWLGFRLELVGSWVLCISALFMVLLPSNVIRPENVGLSLSYGLSLNSVLFF 1227
Query: 1216 IIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHL 1275
I+ C ENKM+SVERI Q++++PSE+ +E PPSNWP G + +L++RY +
Sbjct: 1228 AIYMSCFVENKMVSVERIKQFTDIPSESEWERKETLPPSNWPFHGNVHLEDLKVRYRPNT 1287
Query: 1276 PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL 1335
P VLK I+ G +KVGVVGRTGSGKSTLIQ +FR+VEP+ G IIID +DI+ +GLHDL
Sbjct: 1288 PLVLKGITLDIKGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGIDISTLGLHDL 1347
Query: 1336 RSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAEN 1395
RSR GIIPQ+P LF+GTVR N+DP QYSD+++W++L++CQL D+V K EKLDS V +N
Sbjct: 1348 RSRFGIIPQEPVLFEGTVRSNIDPTEQYSDEEIWKSLERCQLKDVVATKPEKLDSLVVDN 1407
Query: 1396 GENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAH 1455
GENWSVGQRQL CLGR +LK+S +L LDEATASVDS TD VIQKII ++F T+++IAH
Sbjct: 1408 GENWSVGQRQLLCLGRVMLKRSRLLFLDEATASVDSQTDAVIQKIIREDFASCTIISIAH 1467
Query: 1456 RIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMRS 1502
RI TV+D D VLV+ G+ E+DSP +LLER S F+ L++EY++RS
Sbjct: 1468 RIPTVMDGDRVLVIDAGKAKEFDSPARLLERP-SLFAALVQEYALRS 1513
|
Involved in the regulation of stomatal aperture. May function as a high-capacity pump for folates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8LGU1|AB8C_ARATH ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 1035 bits (2675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/1268 (43%), Positives = 796/1268 (62%), Gaps = 18/1268 (1%)
Query: 234 KRDSPYGKSTLLQLVTFSWLNPLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLDLV 293
K + + +++FSW+NPL ++G KKPL +DIP V +D A+ +F Q D +
Sbjct: 198 KESARLATAGFFSILSFSWMNPLLSLGFKKPLSPEDIPSVVPEDEAQLAYKKFSQAWDTL 257
Query: 294 KEKEGSTNPS--IYKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRS 351
E ST +++A+ K+ A FA + P ++ FV++ + R
Sbjct: 258 LGDESSTKERNLVFRAVVKVYFKENIFIAVFAFLRTFAVVSLPLMLYVFVDY-ANSDHRD 316
Query: 352 LESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHT 411
L +G+ + K+VE++ R W F +R+ G+R+R+AL+ Y+K L LSS R+ H+
Sbjct: 317 LRNGFFNLACLVMLKLVESLTMRHWYFASRRSGMRIRSALMVAAYKKQLKLSSLGRKRHS 376
Query: 412 SGEIINYMSVDVQRISDFIFYSNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTC 471
SGEI+NY++VD R+ +F+++ + + L +Q+ L+ +L +G G+ L L
Sbjct: 377 SGEIVNYIAVDAYRMGEFLWWFHSGWSLSLQLLLSTAVLFGVVGAGAFPGLILLLLCGLL 436
Query: 472 NIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWL 531
N+P ++ + Q++ M A+D R+R+TSE+L +MK +KLQ+W+ F +K+ES R E WL
Sbjct: 437 NLPFAKMLQNCQTQFMIAQDKRLRSTSEILNSMKVIKLQSWEDEFKKKIESCRDDEFTWL 496
Query: 532 WKSLRLSATSAFIFWGSPTFISVVTFGACMLL-GIQLTAGRVLSALATFRMLQDPIFNLP 590
K+ A +F++W SPT +S V F C LL L A + + LAT R++ +P+ +P
Sbjct: 497 AKAQLTKAFGSFLYWMSPTIVSSVVFLGCALLKSAPLNASTIFTVLATLRVMSEPVKIIP 556
Query: 591 DLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTL 650
D +S I QG VS R+ +L +DE++ D +E S V++ G F W PE+ PTL
Sbjct: 557 DAISAIIQGNVSFQRLNNFLLDDELKMDEIERSGLDASGTAVDIQVGNFGWEPETKIPTL 616
Query: 651 DGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGN 710
I L++K G KVA+CG VG+GKSSLL +LGEI K++GTVK+ G+ AYV Q+ WI +G
Sbjct: 617 RNIHLEIKHGQKVAVCGPVGAGKSSLLHAVLGEIPKVSGTVKVFGSIAYVSQTSWIQSGT 676
Query: 711 IRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARA 770
IR+NIL+G +S +Y+ ++ACAL KD F GDLTEIG+RGIN+SGGQKQRIQ+ARA
Sbjct: 677 IRDNILYGKPMESRRYNAAIKACALDKDMNGFGHGDLTEIGQRGINLSGGQKQRIQLARA 736
Query: 771 VYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMEN 830
VY DAD+YLLDDPFSAVDAHT LF C+ LK+K+V+ VTHQVEFL D ILVME
Sbjct: 737 VYADADVYLLDDPFSAVDAHTAGVLFHKCVEDSLKEKTVILVTHQVEFLSEVDQILVMEE 796
Query: 831 GRIAQAGRFEELLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNV 890
G I Q+G++EELL F+ LV AH+ A+ +VL + S+ + D E + V
Sbjct: 797 GTITQSGKYEELLMMGTAFQQLVNAHNDAV-TVLPL-ASNESLGDLRKEGKDREIRNMTV 854
Query: 891 KLVHSQHDSEHELSLEITEKGGKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQ 950
+ + ++ G +L QEEE+E G +G + + Y+ +G L+ +L Q
Sbjct: 855 VEKIEEEIEKTDI------PGVQLTQEEEKESGYVGMKPFLDYIGVSRGWCLLWSSVLGQ 908
Query: 951 SSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGL 1010
F V Q AS YW+A+A G P + +++ VY++++ S+ V RA+ A GL
Sbjct: 909 VGFVVFQAASTYWLAFAI-----GIPKITNTMLIGVYSIISTLSAGFVYARAITTAHLGL 963
Query: 1011 RTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQIL 1070
+ ++ F+ ++V +APM FFDSTP GRIL RAS+D +VLD ++ + +++
Sbjct: 964 KASKAFFSGFTNAVFKAPMLFFDSTPVGRILTRASSDLNVLDYDVPFAFIFVVAPAVELT 1023
Query: 1071 GTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGA 1130
+ +M+ V WQV +I + Q YY+ +AREL R+ +AP++++ AE+ G
Sbjct: 1024 AALLIMTYVTWQVIIIALLALAATKVVQDYYLASARELIRINGTTKAPVMNYAAETSLGV 1083
Query: 1131 ATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLP 1190
TI AF +RF L+L+D + +F + +AMEW+ R+ L N ++L+ +P
Sbjct: 1084 VTIRAFGTAERFFKNYLNLVDADAVLFFLSNAAMEWVILRIETLQNVTLFTCALLLILIP 1143
Query: 1191 EGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEEC 1250
+G I P + GL+++Y + L Q + C N +ISVERI QY N+P E P + ++
Sbjct: 1144 KGYIAPGLVGLSLSYALTLTQTQVFLTRWYCTLSNSIISVERIKQYMNIPEEPPAIIDDK 1203
Query: 1251 RPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIF 1310
RPPS+WP GTI L+IRY + P VLK ISCTF +VGVVGRTGSGKSTLI A+F
Sbjct: 1204 RPPSSWPSNGTIHLQELKIRYRPNAPLVLKGISCTFREGTRVGVVGRTGSGKSTLISALF 1263
Query: 1311 RIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWE 1370
R+VEP G I+ID +DI+KIGL DLR +L IIPQ+PTLF G +R NLDPL YSD ++W+
Sbjct: 1264 RLVEPASGCILIDGIDISKIGLKDLRMKLSIIPQEPTLFRGCIRTNLDPLGVYSDDEIWK 1323
Query: 1371 ALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD 1430
AL+KCQL + KLDS+V++ GENWSVGQRQLFCLGR LLK++ ILVLDEATAS+D
Sbjct: 1324 ALEKCQLKTTISNLPNKLDSSVSDEGENWSVGQRQLFCLGRVLLKRNKILVLDEATASID 1383
Query: 1431 SATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSF 1490
SATD +IQ+II +EF D TV+T+AHR+ TVIDSD+V+VLS G + EY+ P+KL+E DS+
Sbjct: 1384 SATDAIIQRIIREEFADCTVITVAHRVPTVIDSDMVMVLSFGDLVEYNEPSKLME-TDSY 1442
Query: 1491 FSQLIKEY 1498
FS+L+ EY
Sbjct: 1443 FSKLVAEY 1450
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1513 | ||||||
| 359489333 | 1484 | PREDICTED: ABC transporter C family memb | 0.973 | 0.992 | 0.760 | 0.0 | |
| 224132090 | 1476 | multidrug resistance protein ABC transpo | 0.969 | 0.993 | 0.755 | 0.0 | |
| 356522944 | 1519 | PREDICTED: ABC transporter C family memb | 0.982 | 0.978 | 0.722 | 0.0 | |
| 449520427 | 1460 | PREDICTED: LOW QUALITY PROTEIN: ABC tran | 0.950 | 0.984 | 0.727 | 0.0 | |
| 356504494 | 1520 | PREDICTED: ABC transporter C family memb | 0.980 | 0.976 | 0.713 | 0.0 | |
| 449432331 | 1512 | PREDICTED: LOW QUALITY PROTEIN: ABC tran | 0.963 | 0.964 | 0.711 | 0.0 | |
| 334186144 | 1506 | ABC transporter C family member 9 [Arabi | 0.970 | 0.975 | 0.673 | 0.0 | |
| 7076769 | 1490 | multi resistance protein homolog [Arabid | 0.960 | 0.975 | 0.666 | 0.0 | |
| 297820872 | 1489 | ATMRP9 [Arabidopsis lyrata subsp. lyrata | 0.964 | 0.980 | 0.668 | 0.0 | |
| 414585697 | 1540 | TPA: hypothetical protein ZEAMMB73_97499 | 0.980 | 0.962 | 0.631 | 0.0 |
| >gi|359489333|ref|XP_002265346.2| PREDICTED: ABC transporter C family member 9-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2337 bits (6056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1139/1498 (76%), Positives = 1283/1498 (85%), Gaps = 25/1498 (1%)
Query: 14 HFQTAWLPLRSPCFWEHIISIVVQLGFLGLLLLQLARTTL--FRRLGADFRDLVVDKYPY 71
FQTAWL L SPC WE + SIV+QLGFLG+ LL L + + + D ++ YP
Sbjct: 7 EFQTAWLQLSSPCLWEDV-SIVLQLGFLGIFLLHLVQKIVGHLWKHRTTVTDKGIEMYPN 65
Query: 72 GVKLGICYKASMVSSTLIFGTHFIILLTVMLNTGGEAEAVCNSGILAFSSRIMQVVSWAS 131
K KAS++ S+++ G H I+LL M G E C S IL SS +MQV+ W
Sbjct: 66 EAKASFSCKASIICSSILLGIHVIVLL--MPPNGSEGN--CKSPILVLSSEVMQVMIWLI 121
Query: 132 TLFLLCKIIPNSAHVKFPWILRAWWFCSFLFSILCTALHTYLRIRYRGQFRIQDYVDIIA 191
TL +CKI +VKFPWILR +W CSFL S++ TA + + G R+QDY D +
Sbjct: 122 TLIAVCKI-STKKYVKFPWILRTYWLCSFLLSVIHTAFDVHFLVTNNGHLRMQDYTDFLG 180
Query: 192 LLASTFLFGISIQGKTGLLLHTASSDTTEPFLNVKADKQFKSKRDSPYGKSTLLQLVTFS 251
LLAST LFGISI+GKTG +L + + +P LN K D + K +SPYGK+TL QL+TFS
Sbjct: 181 LLASTCLFGISIRGKTGTVL-ISQNGLADPLLNGKTDNHSEGKTESPYGKATLFQLITFS 239
Query: 252 WLNPLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLDLVKEKEGSTNPSIYKAIFFF 311
WLNPLFAVGIKKPL D+IPDVD+KDSAEF S+ F++ L V+E++G+TNPSIYKAIF F
Sbjct: 240 WLNPLFAVGIKKPLAQDEIPDVDVKDSAEFTSHYFDECLKHVRERDGTTNPSIYKAIFLF 299
Query: 312 IRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETI 371
I KKAAINA FA+I+AA SYVGPYLI+DFVNFL+ KK+RSLESGYLLALAFL AK VETI
Sbjct: 300 IWKKAAINALFAMISAAASYVGPYLIDDFVNFLSMKKTRSLESGYLLALAFLSAKTVETI 359
Query: 372 AQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIF 431
AQRQWIFGARQLGLRLRAALISH+Y+KGL LSSQSRQSHTSGEIINYM VD+QR++DFI+
Sbjct: 360 AQRQWIFGARQLGLRLRAALISHIYKKGLVLSSQSRQSHTSGEIINYMGVDIQRMTDFIW 419
Query: 432 YSNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQKRFQSKIMDAKD 491
Y N ++MLP+QISLAI +L N+GLGSLAALAATL VM CNIP+TRIQKR+QSKIM+AKD
Sbjct: 420 YMNTIWMLPIQISLAICVLNMNIGLGSLAALAATLMVMACNIPLTRIQKRYQSKIMEAKD 479
Query: 492 NRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWGSPTF 551
RM+ATSEVL+N+KTLKLQAWD++FL KLESLR++E WLWKSLRL A SAFIFWGSPTF
Sbjct: 480 ERMKATSEVLRNIKTLKLQAWDSQFLHKLESLRKIEYNWLWKSLRLGALSAFIFWGSPTF 539
Query: 552 ISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQ 611
ISVVTFGAC+L+GI+LT+GRVLSALATFRMLQDPIFNLPDLLS IAQGKVS DR+A++LQ
Sbjct: 540 ISVVTFGACLLMGIELTSGRVLSALATFRMLQDPIFNLPDLLSVIAQGKVSVDRVASFLQ 599
Query: 612 EDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGS 671
EDE+Q D +E+VPK ++EFEVE+ NGKFSWNP+SSSPTLD IQLKVKRGMKVAICGTVGS
Sbjct: 600 EDEVQSDTIEFVPKDQTEFEVEIDNGKFSWNPDSSSPTLDKIQLKVKRGMKVAICGTVGS 659
Query: 672 GKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVE 731
GKSSLLSCILGEI+K++GTVKI GTKAYVPQSPWILTGN++ENILFGN+YDS KYD TV+
Sbjct: 660 GKSSLLSCILGEIKKLSGTVKIGGTKAYVPQSPWILTGNVKENILFGNRYDSVKYDETVK 719
Query: 732 ACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHT 791
ACAL KDFELF GDLTEIGERGINMSGGQKQRIQIARAVY+DADIYLLDDPFSAVDAHT
Sbjct: 720 ACALTKDFELFPCGDLTEIGERGINMSGGQKQRIQIARAVYEDADIYLLDDPFSAVDAHT 779
Query: 792 GTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEV 851
GTQLFKDCLMGILK+K++LYVTHQVEFLPAAD ILVM++GRIAQAGRFE+LLKQNIGFEV
Sbjct: 780 GTQLFKDCLMGILKNKTILYVTHQVEFLPAADFILVMQDGRIAQAGRFEQLLKQNIGFEV 839
Query: 852 LVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKG 911
LVGAH+QALES+LTVE SSRTS+DP PE+E N D TSN +++H+QHDSEH +SLEITEK
Sbjct: 840 LVGAHNQALESILTVENSSRTSKDPVPENESNKDPTSNSEMIHTQHDSEHNISLEITEKQ 899
Query: 912 GKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPT 971
G+L Q+EEREKGSIGKEVY SYLT V+GGALVPII+LAQS FQVLQVASNYWMAWASPPT
Sbjct: 900 GRLTQDEEREKGSIGKEVYMSYLTIVRGGALVPIIILAQSMFQVLQVASNYWMAWASPPT 959
Query: 972 SDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAF 1031
S+ P +G++ +L VY LL VGSSL VLLRA LVAITGL TAQKLF ML SV RAPMAF
Sbjct: 960 SESRPKMGLDYILFVYILLAVGSSLFVLLRASLVAITGLSTAQKLFVKMLQSVVRAPMAF 1019
Query: 1032 FDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVT 1091
FDSTPTGRILNRAS DQSVLD+E+A RLGWCAFS+IQILGTI VMSQVAW
Sbjct: 1020 FDSTPTGRILNRASIDQSVLDMEMANRLGWCAFSVIQILGTIAVMSQVAW---------- 1069
Query: 1092 GICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLID 1151
+QYYIPTAREL RLA IQ++PILHHF+ESL+GAATI AFDQEDRF +ANL L+D
Sbjct: 1070 ------EQYYIPTARELGRLASIQQSPILHHFSESLSGAATIRAFDQEDRFIHANLDLVD 1123
Query: 1152 NHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNV 1211
N SRPWFHNVSAMEWL FRLN+LSNFVFAFSLV+LV+LPEGIINPSIAGLAVTYGINLNV
Sbjct: 1124 NFSRPWFHNVSAMEWLSFRLNVLSNFVFAFSLVLLVSLPEGIINPSIAGLAVTYGINLNV 1183
Query: 1212 LQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRY 1271
LQAS+IWNICNAENKMISVERILQYS + SEAPLV EECRP +NWP VGTI F NLQIRY
Sbjct: 1184 LQASVIWNICNAENKMISVERILQYSKIKSEAPLVIEECRPENNWPQVGTICFQNLQIRY 1243
Query: 1272 AEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG 1331
AEHLPSVLKNISCTFPG K+GVVGRTGSGKSTLIQAIFRIVEP GSIIID VDI+KIG
Sbjct: 1244 AEHLPSVLKNISCTFPGGMKIGVVGRTGSGKSTLIQAIFRIVEPREGSIIIDGVDISKIG 1303
Query: 1332 LHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDST 1391
LHDLRSRL IIPQDP +F+GTVRGNLDPL Q+ D QVWEALDKCQLGDLVRAKEEKLDS+
Sbjct: 1304 LHDLRSRLSIIPQDPAMFEGTVRGNLDPLDQHPDGQVWEALDKCQLGDLVRAKEEKLDSS 1363
Query: 1392 VAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVV 1451
V ENGENWSVGQRQL CLGR LLK+SSILVLDEATASVDSATDGVIQKIISQEFKDRTVV
Sbjct: 1364 VVENGENWSVGQRQLVCLGRALLKRSSILVLDEATASVDSATDGVIQKIISQEFKDRTVV 1423
Query: 1452 TIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMRSQNFNSVA 1509
TIAHRIHTVIDSDLVLVLS+GRIAEYD+P KLLER+DSFFS+LIKEYS RS+ F +A
Sbjct: 1424 TIAHRIHTVIDSDLVLVLSEGRIAEYDTPAKLLERDDSFFSKLIKEYSKRSKGFGKLA 1481
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132090|ref|XP_002321253.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222862026|gb|EEE99568.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2297 bits (5952), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1127/1492 (75%), Positives = 1290/1492 (86%), Gaps = 25/1492 (1%)
Query: 19 WLPLRSPCFWEHIISIVVQLGFLGLLLLQLARTT--LFRRLGADFRDLVVDKYPYGVKLG 76
W L+SPC EHI +I VQLGFLG+LLL L R L G D + Y G+K
Sbjct: 3 WPQLQSPCLREHI-TIGVQLGFLGILLLHLLRKCADLAFNGGTKTTDQGKENYHIGLKFS 61
Query: 77 ICYKASMVSSTLIFGTHFIILLTVMLNTGGEAEAVCNSGILAFSSRIMQVVSWASTLFLL 136
YKASMV ST + G H +LL V+LN E CNS + FS+ ++Q++SWA TL +
Sbjct: 62 NSYKASMVCSTCLLGVHISMLL-VLLNG---QETSCNSIVRVFSAEVLQMISWAITLVAV 117
Query: 137 CKIIPNSAHVKFPWILRAWWFCSFLFSILCTALHTYLRIRYRGQFRIQDYVDIIALLAST 196
+I P+ +VKFPWI+RAWW CSF+ SI+CT+L +I G R++DY ++ ALL ST
Sbjct: 118 FRIFPSRRYVKFPWIIRAWWLCSFMLSIVCTSLDINFKITNHGHLRLRDYAELFALLPST 177
Query: 197 FLFGISIQGKTGLLLHTASSDTTEPFLNVKADKQFKSKRDSPYGKSTLLQLVTFSWLNPL 256
FL IS +GKTG++ + A + T+P L+ K+DK +KR+SPYGK+TLLQL+TFSWL PL
Sbjct: 178 FLLAISFRGKTGIVFN-AFNGVTDPLLHEKSDKDSDTKRESPYGKATLLQLITFSWLTPL 236
Query: 257 FAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLDLVKEKEGSTNPSIYKAIFFFIRKKA 316
FAVG KKPLE D+IPDV IKDSA FLS+ F+++L+ VKEK+ + NPSIYKAIF FIRKKA
Sbjct: 237 FAVGYKKPLEQDEIPDVYIKDSAGFLSSSFDENLNQVKEKDRTANPSIYKAIFLFIRKKA 296
Query: 317 AINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQW 376
AINA FAV +AA SYVGPYLI+DFVNFLT+KK+RSL+SGYLLAL FLGAK VETIAQRQW
Sbjct: 297 AINALFAVTSAAASYVGPYLIDDFVNFLTEKKTRSLQSGYLLALGFLGAKTVETIAQRQW 356
Query: 377 IFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYM 436
IFGARQLGLRLRA+LISH+Y+KGL LSSQSRQSHTSGEIINYMSVD+QRI+DFI+Y NY+
Sbjct: 357 IFGARQLGLRLRASLISHIYKKGLLLSSQSRQSHTSGEIINYMSVDIQRITDFIWYLNYI 416
Query: 437 FMLPVQISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRA 496
+MLPVQI+LAIYIL T LGLGS+AAL ATL VM CNIPITR QKR+Q+KIM+AKD RM+A
Sbjct: 417 WMLPVQITLAIYILHTTLGLGSMAALTATLAVMACNIPITRFQKRYQTKIMEAKDKRMKA 476
Query: 497 TSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWGSPTFISVVT 556
TSEVL+NMK LKLQAWDT+FL K+ESLR++E LWKSLRLSA SAF+FWGSPTFISVVT
Sbjct: 477 TSEVLRNMKILKLQAWDTQFLHKIESLRKIEYNCLWKSLRLSAISAFVFWGSPTFISVVT 536
Query: 557 FGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQ 616
FGACML+GIQLTAGRVLSALATFRMLQDPIFNLPDLLS IAQGKVSADR+A++LQE EIQ
Sbjct: 537 FGACMLMGIQLTAGRVLSALATFRMLQDPIFNLPDLLSVIAQGKVSADRVASFLQEGEIQ 596
Query: 617 RDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSL 676
DA E+VPK ++E+ + + +G+F W+ +SS+PTLD I+LKVKRGMKVAICGTVGSGKSSL
Sbjct: 597 HDATEHVPKDQAEYAISIDDGRFCWDSDSSNPTLDEIRLKVKRGMKVAICGTVGSGKSSL 656
Query: 677 LSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALV 736
LSCILGEIQK++GTVKISG KAYVPQSPWILTGNIRENILFGN YDS +Y RTV+ACAL+
Sbjct: 657 LSCILGEIQKLSGTVKISGAKAYVPQSPWILTGNIRENILFGNPYDSVRYYRTVKACALL 716
Query: 737 KDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLF 796
KDFELF+SGDLT+IGERGINMSGGQKQRIQIARAVYQDADIYL DDPFSAVDAHTG+QLF
Sbjct: 717 KDFELFSSGDLTDIGERGINMSGGQKQRIQIARAVYQDADIYLFDDPFSAVDAHTGSQLF 776
Query: 797 KDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGAH 856
++CLMGILKDK+++YVTHQVEFLPAADIILVM+NGRIA+AG F ELLKQN+GFE LVGAH
Sbjct: 777 QECLMGILKDKTIIYVTHQVEFLPAADIILVMQNGRIAEAGTFSELLKQNVGFEALVGAH 836
Query: 857 SQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGGKLVQ 916
SQALESVLTVE S RTSQDP P+SE N++STSN + S ++S+H+LS+EITEKGGK VQ
Sbjct: 837 SQALESVLTVENSRRTSQDPEPDSESNTESTSNSNCL-SHYESDHDLSVEITEKGGKFVQ 895
Query: 917 EEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEP 976
+EEREKGSIGKEVYWSYLT VKGGALVP I+LAQS FQ+LQ+ SNYWMAW+SPPTSD P
Sbjct: 896 DEEREKGSIGKEVYWSYLTTVKGGALVPCIILAQSLFQILQIVSNYWMAWSSPPTSDTAP 955
Query: 977 ALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTP 1036
GMN +LLVYTLL++ SSLCVL+RA LVAI GL TAQKLFTNML S+ RAPMAFFDSTP
Sbjct: 956 VYGMNFILLVYTLLSISSSLCVLVRATLVAIAGLSTAQKLFTNMLRSLLRAPMAFFDSTP 1015
Query: 1037 TGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIW 1096
TGRILNRAS DQSV+D+E+A RLGWCAFSIIQILGTI VMSQVAW
Sbjct: 1016 TGRILNRASMDQSVIDMEIAQRLGWCAFSIIQILGTIAVMSQVAW--------------- 1060
Query: 1097 YQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRP 1156
+QYY PTARELARLA IQ+APILHHF+ESLAGAATI AFDQ++RF +NL LIDNHSRP
Sbjct: 1061 -EQYYTPTARELARLAGIQQAPILHHFSESLAGAATIRAFDQQERFYCSNLDLIDNHSRP 1119
Query: 1157 WFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASI 1216
WFHNVSAMEWL FRLNLLSNFVFAFSLV+LV+LPEG+I+PSIAGLAVTYGINLNVLQAS+
Sbjct: 1120 WFHNVSAMEWLSFRLNLLSNFVFAFSLVLLVSLPEGVISPSIAGLAVTYGINLNVLQASV 1179
Query: 1217 IWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLP 1276
IWNICNAENKMIS+ER+LQYS++ SEAPLV E+ RPP+ WP+VG I F +LQIRYAEHLP
Sbjct: 1180 IWNICNAENKMISIERVLQYSSITSEAPLVLEQSRPPNKWPEVGAICFKDLQIRYAEHLP 1239
Query: 1277 SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLR 1336
SVLKNI+C FPGRKKVGVVGRTGSGKSTLIQAIFRIVEP GSIIID+VDI+KIGL DLR
Sbjct: 1240 SVLKNINCAFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPREGSIIIDDVDISKIGLQDLR 1299
Query: 1337 SRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENG 1396
SRL IIPQDPT+F+GTVRGNLDPL QYSD ++WEAL+KCQLGDLVR K+EKLDS V ENG
Sbjct: 1300 SRLSIIPQDPTMFEGTVRGNLDPLGQYSDYEIWEALEKCQLGDLVRGKDEKLDSPVVENG 1359
Query: 1397 ENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHR 1456
ENWSVGQRQLFCLGR LLKKS ILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHR
Sbjct: 1360 ENWSVGQRQLFCLGRALLKKSRILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHR 1419
Query: 1457 IHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMRSQNFNSV 1508
IHTVIDSDLVLVLSDGR+AE+D+P +LLERE+SFFS+LIKEYSMRSQ+FN++
Sbjct: 1420 IHTVIDSDLVLVLSDGRVAEFDTPARLLEREESFFSKLIKEYSMRSQSFNNL 1471
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356522944|ref|XP_003530102.1| PREDICTED: ABC transporter C family member 9-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2190 bits (5675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1082/1498 (72%), Positives = 1252/1498 (83%), Gaps = 12/1498 (0%)
Query: 15 FQTAWLPLRSPCFWEHIISIVVQLGFLGLLLLQLAR--TTLFRRLGADFRDLVVDKYPYG 72
F T+W PL S C EHII + V+LGFL +LL QL R + F + +P
Sbjct: 21 FWTSWQPLESTCLLEHII-LPVELGFLVILLFQLLRKYVSQFSKQTKVPDGATKMMHPTA 79
Query: 73 VKLGICYKASMVSSTLIFGTHFIILLTVMLNTGGEAEAVCNSGILAFSSRIMQVVSWAST 132
+K G YK + V +TL+ H LL +MLN E C S + AF+S I+QV+SW+ +
Sbjct: 80 IKFGFAYKLTFVCTTLLLVVHSSQLL-LMLNN----ETQCTSKLQAFTSEIVQVLSWSIS 134
Query: 133 LFLLCKIIPNSAHVKFPWILRAWWFCSFLFSILCTALHTYLRIRYRGQFRIQDYVDIIAL 192
L + KI + +H FPWILRAWW CSF+ I+ TALH + + GQ +++ D + L
Sbjct: 135 LIAIWKI--SKSHTYFPWILRAWWLCSFILCIITTALHAHFSVINNGQIGLRECADFLGL 192
Query: 193 LASTFLFGISIQGKTGLLLHTASSDTTEPFLNVKADKQFKSKRDSPYGKSTLLQLVTFSW 252
LAST L IS +GKTG +L A++ +EP L KA++ + ++SPYGK+TLLQL+ FSW
Sbjct: 193 LASTCLLVISTRGKTGTVL-LATNGASEPLLGEKAERHSECLKESPYGKATLLQLINFSW 251
Query: 253 LNPLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLDLVKEKEGSTNPSIYKAIFFFI 312
LNPLFAVG KKPLE +DIPDVDI DSAEFL+ F++ L VKEK+G+ NPSIYK+I+ F
Sbjct: 252 LNPLFAVGYKKPLEQNDIPDVDINDSAEFLTCSFDESLRQVKEKDGTANPSIYKSIYLFA 311
Query: 313 RKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIA 372
RKKAAINA FAV+NA+ SYVGPYLI DFV+FL +K SR L+SGYLL+LAFL AKMVETIA
Sbjct: 312 RKKAAINALFAVVNASASYVGPYLITDFVDFLGEKGSRGLKSGYLLSLAFLCAKMVETIA 371
Query: 373 QRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFY 432
QRQWIFGARQLGLRLRAALISH+Y+KGLHLSS+SRQSHT GEI+NYMSVDVQRI+DF++Y
Sbjct: 372 QRQWIFGARQLGLRLRAALISHIYQKGLHLSSRSRQSHTGGEIMNYMSVDVQRITDFVWY 431
Query: 433 SNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQKRFQSKIMDAKDN 492
N ++MLP+QISLA++IL TNLGLGSLAALAATL VMT NIP+T+IQKR+Q+KIMDAKDN
Sbjct: 432 VNVIWMLPIQISLAVFILHTNLGLGSLAALAATLAVMTLNIPLTKIQKRYQAKIMDAKDN 491
Query: 493 RMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWGSPTFI 552
RM+ATSE+L+NM+TLKLQAWD +F Q++E+LRQ+E WL KSLR +A SAFIFWGSPTFI
Sbjct: 492 RMKATSEILRNMRTLKLQAWDRQFSQRIEALRQIEYNWLMKSLRQAAFSAFIFWGSPTFI 551
Query: 553 SVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQE 612
SV+TF ACM +GI+LTAGRVLSA ATFRMLQDPIF+LPDLL+ IAQGKVS DRIA++L+E
Sbjct: 552 SVITFWACMFMGIELTAGRVLSAFATFRMLQDPIFSLPDLLNAIAQGKVSVDRIASFLRE 611
Query: 613 DEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSG 672
+EIQ D +E V K ++EF++ + G+FSW+PES +PT+D I+LKVKRGMKVA+CG+VGSG
Sbjct: 612 EEIQHDVIENVAKDKTEFDIVIEKGRFSWDPESKTPTIDEIELKVKRGMKVAVCGSVGSG 671
Query: 673 KSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEA 732
KSSLLS +LGEI K +GTVKISGTKAYVPQS WILTGNI++NI FG +Y+ KY++T+EA
Sbjct: 672 KSSLLSGLLGEIYKQSGTVKISGTKAYVPQSAWILTGNIKDNITFGKEYNGDKYEKTIEA 731
Query: 733 CALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTG 792
CAL KDFELF+ GD+TEIGERGINMSGGQKQRIQIARAVYQDADIYL DDPFSAVDAHTG
Sbjct: 732 CALKKDFELFSCGDMTEIGERGINMSGGQKQRIQIARAVYQDADIYLFDDPFSAVDAHTG 791
Query: 793 TQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVL 852
T LFK+CLMGILK+K++++VTHQVEFLPAAD+ILVM+NGRIAQAG+FE+LLKQNIGFEVL
Sbjct: 792 THLFKECLMGILKEKTIIFVTHQVEFLPAADLILVMQNGRIAQAGKFEDLLKQNIGFEVL 851
Query: 853 VGAHSQALESVLTVETSSRTSQDP-TPESELNSDSTSNVKLVHSQHDSEHELSLEITEKG 911
VGAHS+ALES++ E SSRT+ + E E N S + + V +QHDS + E
Sbjct: 852 VGAHSKALESIIVAENSSRTNLNSIAEEGESNFSSKPSHQHVQTQHDSVQDNPPEGKGND 911
Query: 912 GKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPT 971
GKLVQEEERE GSI KEVYW YLT VKGG LVP+ILLAQSSFQ+LQ+ASNYWMAW P +
Sbjct: 912 GKLVQEEERETGSIAKEVYWEYLTTVKGGILVPLILLAQSSFQILQIASNYWMAWVCPTS 971
Query: 972 SDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAF 1031
SD +P MN +LL+Y L+V S CVLLRAM+V GL TAQ LFT MLHSV RAPMAF
Sbjct: 972 SDAKPIFDMNFILLIYMALSVAGSFCVLLRAMMVLNAGLWTAQTLFTKMLHSVLRAPMAF 1031
Query: 1032 FDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVT 1091
FDSTPTGRILNRAS DQSVLDLE+A R+GWCAFSIIQILGTI VM QVAWQVFVIFIPVT
Sbjct: 1032 FDSTPTGRILNRASTDQSVLDLEMANRIGWCAFSIIQILGTIAVMCQVAWQVFVIFIPVT 1091
Query: 1092 GICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLID 1151
+CIWYQ+YY PTARELARLA+IQ PILHHF+ESLAGAA+I AFDQE RF NL L+D
Sbjct: 1092 AVCIWYQRYYTPTARELARLAQIQITPILHHFSESLAGAASIRAFDQEGRFIYTNLLLVD 1151
Query: 1152 NHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNV 1211
SRPWFHNVSAMEWL FRLNLLSNFVFAFSLV+LV+LPEGIINPSIAGLAVTYGINLNV
Sbjct: 1152 GFSRPWFHNVSAMEWLSFRLNLLSNFVFAFSLVMLVSLPEGIINPSIAGLAVTYGINLNV 1211
Query: 1212 LQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRY 1271
LQAS+IWNICNAENKMISVERILQY+N+ SEAPLV E+ RPPSNWP+ GTI F NLQIRY
Sbjct: 1212 LQASVIWNICNAENKMISVERILQYTNITSEAPLVIEDSRPPSNWPETGTICFKNLQIRY 1271
Query: 1272 AEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG 1331
AEHLPSVLKNI+CTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP GSIIIDNVDI KIG
Sbjct: 1272 AEHLPSVLKNITCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPREGSIIIDNVDICKIG 1331
Query: 1332 LHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDST 1391
LHDLRSRL IIPQDP LF+GTVRGNLDPL QYSD +VWEALDKCQLG LVRAKEEKL+
Sbjct: 1332 LHDLRSRLSIIPQDPALFEGTVRGNLDPLQQYSDIEVWEALDKCQLGHLVRAKEEKLEFP 1391
Query: 1392 VAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVV 1451
V ENG+NWSVGQRQLFCLGR LLK+SSILVLDEATASVDSATDGVIQ IISQEFKDRTVV
Sbjct: 1392 VVENGDNWSVGQRQLFCLGRALLKRSSILVLDEATASVDSATDGVIQNIISQEFKDRTVV 1451
Query: 1452 TIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMRSQNFNSVA 1509
TIAHRIHTVIDSDLVLVLSDGR+AEYD P+KLLE+EDSFF +LIKEYS RS NF+++A
Sbjct: 1452 TIAHRIHTVIDSDLVLVLSDGRVAEYDEPSKLLEKEDSFFFKLIKEYSGRSHNFSNLA 1509
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520427|ref|XP_004167235.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter C family member 9-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2172 bits (5628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1055/1451 (72%), Positives = 1227/1451 (84%), Gaps = 13/1451 (0%)
Query: 63 DLVVDKYPYGVKLGICYKASMVSSTLIFGTHFIILLTVMLNTGGEAEAVCNSGILAFSSR 122
D + P KL I Y+AS+ S LI H +L+ +L G ++ CNS I SS
Sbjct: 18 DQAAENCPITQKLSISYRASVGCSFLILAIH--VLMVFVLQNGSVSQ--CNSRIEVLSSE 73
Query: 123 IMQVVSWASTLFLLCKIIPNSAHVKFPWILRAWWFCSFLFSILCTALHTYL-RIRYRGQF 181
I +V++W +F + +++ + + VK+PWILR WWFCSF+ I+ L Y +++ G
Sbjct: 74 ITRVIAWGGAIFAVFRVLRDKS-VKYPWILRGWWFCSFVLLIVHVGLDAYFGNVKHLG-- 130
Query: 182 RIQDYVDIIALLASTFLFGISIQGKTGLLLHTASSDTTEPFLNVKADKQFKSKRDSPYGK 241
+QDY + ++L S FL G+SI G+T ++ + + +P L K Q + ++DSPYG+
Sbjct: 131 -VQDYAEFFSILPSIFLSGLSIYGRTNIVFNVHNG-LEDPLLTEKCLNQERDEKDSPYGR 188
Query: 242 STLLQLVTFSWLNPLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLDLVKEKEGSTN 301
+T QLVTFSWLNPLFAVG KPLE DIP+V DSA+FLS+ F+ L+ V++K ST
Sbjct: 189 ATPFQLVTFSWLNPLFAVGYTKPLEQVDIPNVCKIDSAKFLSHSFDDTLNFVRKKNNSTK 248
Query: 302 PSIYKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALA 361
PSIY+ I+ F RKKAAINA FAVI+AATSYVGPYLI+DFVNFLT KK R+L SGYLLALA
Sbjct: 249 PSIYETIYLFGRKKAAINALFAVISAATSYVGPYLIDDFVNFLTQKKMRTLSSGYLLALA 308
Query: 362 FLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSV 421
F+GAK +ETIAQRQWIFGARQLGLRLRAALISH+Y+KGL LS++SRQS +SGEI+NYMSV
Sbjct: 309 FVGAKTIETIAQRQWIFGARQLGLRLRAALISHIYQKGLRLSNRSRQSCSSGEILNYMSV 368
Query: 422 DVQRISDFIFYSNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQKR 481
D+QRI+DF ++ N ++MLP+QISLA+YIL TNLG+GSL ALAATL VM+CNIP+TRIQK
Sbjct: 369 DIQRITDFSWFLNTVWMLPIQISLAMYILHTNLGVGSLGALAATLVVMSCNIPMTRIQKS 428
Query: 482 FQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATS 541
+Q+KIM+AKDNRM+ TSEVL+NMKTLKLQAWDT++LQKLESLR+VE WLWKSLRL S
Sbjct: 429 YQTKIMEAKDNRMKTTSEVLRNMKTLKLQAWDTQYLQKLESLRKVEHHWLWKSLRLMGIS 488
Query: 542 AFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKV 601
AF+FW +PTFISV TFG C+LL I+LTAGRVLSALATFRMLQDPIFNLPDLLS +AQGKV
Sbjct: 489 AFVFWAAPTFISVTTFGVCVLLRIELTAGRVLSALATFRMLQDPIFNLPDLLSALAQGKV 548
Query: 602 SADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGM 661
SADR+ +YL EDEIQ+D++ YV + +EF++E+ NGKFSW+ E+ +LD I LKVKRGM
Sbjct: 549 SADRVGSYLHEDEIQQDSITYVSRDLTEFDIEIENGKFSWDLETRRASLDQINLKVKRGM 608
Query: 662 KVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQY 721
KVA+CGTVGSGKSSLLSCILGEI+K++GTVKISGTKAYVPQSPWIL+GNI+ENILFGN+Y
Sbjct: 609 KVAVCGTVGSGKSSLLSCILGEIEKLSGTVKISGTKAYVPQSPWILSGNIKENILFGNEY 668
Query: 722 DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLD 781
+S KY+RT++ACAL KD ELF GDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLD
Sbjct: 669 ESTKYNRTIDACALTKDLELFPCGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLD 728
Query: 782 DPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEE 841
DPFSAVDAHTGTQLF+DCLMG LK+K+++YVTHQVEFLPAAD+ILVM+NGRIAQAG FEE
Sbjct: 729 DPFSAVDAHTGTQLFEDCLMGALKEKTIIYVTHQVEFLPAADLILVMQNGRIAQAGGFEE 788
Query: 842 LLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHD-SE 900
LLKQNIGFEVLVGAHSQALES++TVE SS Q E E DST NVK +SQHD +
Sbjct: 789 LLKQNIGFEVLVGAHSQALESIVTVENSSGRPQLTNTEKE--EDSTMNVKPKNSQHDLVQ 846
Query: 901 HELSLEITEKGGKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVAS 960
++ S EIT+KGGKLVQEEERE+GSIGKEVY SYLT VK GA +PII+LAQSSFQ LQV S
Sbjct: 847 NKNSAEITDKGGKLVQEEERERGSIGKEVYLSYLTTVKRGAFIPIIILAQSSFQALQVTS 906
Query: 961 NYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNM 1020
NYW+AWA P TSD + A+G+NIVLLVY+LL +G SLCVL+RAMLVAI GL+TAQ LFTNM
Sbjct: 907 NYWIAWACPTTSDTKAAIGINIVLLVYSLLAIGGSLCVLVRAMLVAIVGLQTAQMLFTNM 966
Query: 1021 LHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVA 1080
L S+ RAPMAFFDSTPTGRI+NRAS DQSVLDLE+A RL WCA +IIQ+ GTI VMSQVA
Sbjct: 967 LRSILRAPMAFFDSTPTGRIINRASTDQSVLDLEMAMRLVWCALAIIQMTGTIVVMSQVA 1026
Query: 1081 WQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQED 1140
W+VF IFIP+T CIW+QQYY PTARELARL+ IQR PILHHFAESLAGAATI AF+QED
Sbjct: 1027 WEVFAIFIPITAACIWFQQYYTPTARELARLSGIQRTPILHHFAESLAGAATIRAFNQED 1086
Query: 1141 RFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAG 1200
RF NL LID+HSRPWFHNVSAMEWL FRLNLLSNFVF FSLV+LVTLPEG INPS+AG
Sbjct: 1087 RFLKTNLGLIDDHSRPWFHNVSAMEWLSFRLNLLSNFVFGFSLVLLVTLPEGTINPSLAG 1146
Query: 1201 LAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVG 1260
LAVTYGINLNVLQA++IWNICNAENK+ISVERILQYS + SEAPLV E CRPPSNWP G
Sbjct: 1147 LAVTYGINLNVLQATVIWNICNAENKIISVERILQYSKIKSEAPLVIENCRPPSNWPQDG 1206
Query: 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSI 1320
TI F NLQIRYA+HLP VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP GSI
Sbjct: 1207 TICFKNLQIRYADHLPDVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPREGSI 1266
Query: 1321 IIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDL 1380
+ID VDI KIGLHDLRSRL IIPQDP++F+GTVRGNLDPL +Y+D+++WEALDKCQLG L
Sbjct: 1267 MIDGVDICKIGLHDLRSRLSIIPQDPSMFEGTVRGNLDPLEKYTDQEIWEALDKCQLGAL 1326
Query: 1381 VRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKI 1440
VRAK+E+L S+V ENGENWSVGQRQLFCLGR LLKKSSILVLDEATAS+DSATDG+IQ I
Sbjct: 1327 VRAKDERLSSSVVENGENWSVGQRQLFCLGRALLKKSSILVLDEATASIDSATDGIIQNI 1386
Query: 1441 ISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSM 1500
ISQEFKDRTVVT+AHRIHTVI SD VLVLSDGRIAE+DSP LL+R+DS FS+LIKEYS
Sbjct: 1387 ISQEFKDRTVVTVAHRIHTVIASDFVLVLSDGRIAEFDSPKMLLKRDDSXFSKLIKEYST 1446
Query: 1501 RSQNFNSVAGR 1511
RSQNFNS+A +
Sbjct: 1447 RSQNFNSLANQ 1457
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504494|ref|XP_003521031.1| PREDICTED: ABC transporter C family member 9-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2168 bits (5617), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1073/1503 (71%), Positives = 1248/1503 (83%), Gaps = 19/1503 (1%)
Query: 15 FQTAWLPLRSPCFWEHIISIVVQLGFLGLLLLQLARTTLF-----RRLGADFRDLVVDKY 69
F T+W P SPC EH+ ++ V+LGF +LL+QL R + ++ +++V +
Sbjct: 19 FWTSWQPFESPCLLEHV-TLPVELGFFVILLVQLLRKYINLISKQNKVTDSAKEIV---H 74
Query: 70 PYGVKLGICYKASMVSSTLIFGTHFIILLTVMLNTGGEAEAVCNSGILAFSSRIMQVVSW 129
P +K G YK S V +TL+ H +L ++ E C S + AF+S I+QV+SW
Sbjct: 75 PTAIKFGFAYKLSFVCTTLLLVVHSSLLSLIL-----NHETQCTSKLQAFTSEIVQVLSW 129
Query: 130 ASTLFLLCKIIPNSAHVKFPWILRAWWFCSFLFSILCTALHTYLRIRYRGQFRIQDYVDI 189
A TL + K + ++ FPW+LRAWW C+F+ I+ TAL + + GQ +++ D
Sbjct: 130 AITLVAIWKT--SKSNTYFPWVLRAWWLCNFILCIISTALQVHFSVTNNGQIGLRECADF 187
Query: 190 IALLASTFLFGISIQGKTGLLLHTASSDTTEPFLNVKADKQFKS--KRDSPYGKSTLLQL 247
+ LAST L IS +GKTG +L + +EP L KA+K+ S +++SPYGK+TLLQL
Sbjct: 188 LGFLASTCLLVISTRGKTGTVLLATNGAASEPLLGEKAEKEKHSECQKESPYGKATLLQL 247
Query: 248 VTFSWLNPLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLDLVKEKEGSTNPSIYKA 307
+ FSWLNPLFAVG KKPLE DIPDVDI DSAEFL+ F++ L VKEK+ + NPSIYKA
Sbjct: 248 INFSWLNPLFAVGYKKPLEQIDIPDVDINDSAEFLTCSFDESLRQVKEKDATANPSIYKA 307
Query: 308 IFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKM 367
I+ F RKKAAINA FAV+NA+ SYVGPYLI DFV+FL +K S L+SGYLL+LAFL AKM
Sbjct: 308 IYLFARKKAAINALFAVVNASASYVGPYLITDFVDFLGEKGSHGLKSGYLLSLAFLCAKM 367
Query: 368 VETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRIS 427
VETIAQRQWIFGARQLGLRLRAALISH+Y+KGLHLSS+SRQSHT GEI+NYMSVDVQRI+
Sbjct: 368 VETIAQRQWIFGARQLGLRLRAALISHIYQKGLHLSSRSRQSHTGGEIMNYMSVDVQRIT 427
Query: 428 DFIFYSNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQKRFQSKIM 487
DF++Y N ++MLP+QISLA++IL TNLGLGSLAALAATL VMT NIP+T+IQKR+Q+KIM
Sbjct: 428 DFVWYVNVIWMLPIQISLAVFILHTNLGLGSLAALAATLAVMTLNIPLTKIQKRYQAKIM 487
Query: 488 DAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWG 547
DAKDNRM+ATSE+L+NM+TLKLQAWD +F Q++E LRQ+E WL KSLR +A +AFIFWG
Sbjct: 488 DAKDNRMKATSEILRNMRTLKLQAWDRQFSQRIEGLRQIEYNWLTKSLRQAAFTAFIFWG 547
Query: 548 SPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIA 607
SPTFISV+TF ACM +GI+LTAGRVLSA ATFRMLQDPIF+LPDLL+ IAQGKVS DRIA
Sbjct: 548 SPTFISVITFWACMFMGIELTAGRVLSAFATFRMLQDPIFSLPDLLNVIAQGKVSVDRIA 607
Query: 608 AYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICG 667
++L+E+EIQ D +E V K ++EF++ + G+FSW+PES +PT+D I+L VKRGMKVA+CG
Sbjct: 608 SFLREEEIQHDVIENVAKDKTEFDIVIQKGRFSWDPESKTPTIDEIELNVKRGMKVAVCG 667
Query: 668 TVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYD 727
+VGSGKSSLLS ILGEI K +GTVKISGTKAYVPQS WILTGNIR+NI FG +Y+ KY+
Sbjct: 668 SVGSGKSSLLSGILGEIYKQSGTVKISGTKAYVPQSAWILTGNIRDNITFGKEYNGDKYE 727
Query: 728 RTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAV 787
+T+EACAL KDFELF+ GD+TEIGERGINMSGGQKQRIQIARAVYQDADIYL DDPFSAV
Sbjct: 728 KTIEACALKKDFELFSCGDMTEIGERGINMSGGQKQRIQIARAVYQDADIYLFDDPFSAV 787
Query: 788 DAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNI 847
DAHTGT LFK+CLMGILK+K++++VTHQVEFLPAAD+ILVM+NGRIAQAG+F++LLKQNI
Sbjct: 788 DAHTGTHLFKECLMGILKEKTIIFVTHQVEFLPAADLILVMQNGRIAQAGKFKDLLKQNI 847
Query: 848 GFEVLVGAHSQALESVLTVETSSRTSQDP-TPESELNSDSTSNVKLVHSQHDSEHELSLE 906
GFEVLVGAHS+ALES++ E SSRT+ + E E N S S+ + H+QHD+ + E
Sbjct: 848 GFEVLVGAHSKALESIIVAENSSRTNLNSIAEEGESNFSSKSSHQHDHTQHDTVQDNPPE 907
Query: 907 ITEKGGKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAW 966
GKLVQEEERE GSI KEVYW YLT VKGG LVP+ILLAQSSFQ+LQ+ASNYWMAW
Sbjct: 908 GKGNDGKLVQEEERETGSIAKEVYWEYLTTVKGGILVPLILLAQSSFQILQIASNYWMAW 967
Query: 967 ASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHR 1026
P +SD +P MN +LL+Y L+V S CVLLRAM+V GL TAQ FT MLHSV R
Sbjct: 968 VCPTSSDAKPIFDMNFILLIYMALSVAGSFCVLLRAMMVLNAGLWTAQTFFTKMLHSVLR 1027
Query: 1027 APMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVI 1086
APMAFFDSTPTGRILNRAS DQSVLDLE+A ++GWCAFSIIQILGTI VM QVAWQVFVI
Sbjct: 1028 APMAFFDSTPTGRILNRASTDQSVLDLEMANKIGWCAFSIIQILGTIAVMCQVAWQVFVI 1087
Query: 1087 FIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNAN 1146
FIPVTG+CIWYQ+YY PTARELARLA+IQ PILHHF+ESLAGAA+I AFDQE RF N
Sbjct: 1088 FIPVTGVCIWYQRYYTPTARELARLAQIQITPILHHFSESLAGAASIRAFDQEGRFIYTN 1147
Query: 1147 LSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYG 1206
L L+D SRPWFHNVSAMEWL FRLNLLSNFVFAFSLV+LV+LPEGIINPSIAGLAVTYG
Sbjct: 1148 LLLVDGFSRPWFHNVSAMEWLSFRLNLLSNFVFAFSLVMLVSLPEGIINPSIAGLAVTYG 1207
Query: 1207 INLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHN 1266
INLNVLQAS+IWNICNAENKMISVERILQY+N+ SEAPLV E+ RPPSNWPD GTI F N
Sbjct: 1208 INLNVLQASVIWNICNAENKMISVERILQYTNITSEAPLVIEDSRPPSNWPDTGTICFKN 1267
Query: 1267 LQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVD 1326
LQIRYAEHLPSVLKNI+CTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP GSIIIDNVD
Sbjct: 1268 LQIRYAEHLPSVLKNITCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPREGSIIIDNVD 1327
Query: 1327 ITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEE 1386
I KIGLHDLRSRL IIPQDP LF+GTVRGNLDPL +YSD +VWEALDKCQLG LVRAKEE
Sbjct: 1328 ICKIGLHDLRSRLSIIPQDPALFEGTVRGNLDPLQKYSDIEVWEALDKCQLGHLVRAKEE 1387
Query: 1387 KLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK 1446
KLDS V ENG+NWSVGQRQLFCLGR LLK+SSILVLDEATASVDSATDGVIQ IISQEFK
Sbjct: 1388 KLDSPVVENGDNWSVGQRQLFCLGRALLKRSSILVLDEATASVDSATDGVIQNIISQEFK 1447
Query: 1447 DRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMRSQNFN 1506
DRTVVTIAHRIHTVIDSDLVLVLSDGR+AEYD P+KLLEREDSFF +LIKEYS RS NF+
Sbjct: 1448 DRTVVTIAHRIHTVIDSDLVLVLSDGRVAEYDEPSKLLEREDSFFFKLIKEYSGRSHNFS 1507
Query: 1507 SVA 1509
++A
Sbjct: 1508 NLA 1510
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432331|ref|XP_004133953.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter C family member 9-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2134 bits (5530), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1064/1495 (71%), Positives = 1235/1495 (82%), Gaps = 37/1495 (2%)
Query: 24 SPCFWEHIISIVVQLGFLGLLL---LQLARTTLFRRLGADFR--DLVVDKYPYGVKLGIC 78
SPC WE I I VQL FLG+L LQ+ ++ + + D + P KL +
Sbjct: 45 SPCVWE-CIGIGVQLVFLGVLFIRFLQICVCWVWNSFDVESKSTDQAAENCPISRKLSVS 103
Query: 79 YKASMVSSTLIFGTHFIILLTVMLNTGGEAEAVCNSGILAFSSRIMQVVSWASTLFLLCK 138
Y+AS+ S ++ H +L+ +L G + CNS I SS I +V++W +F +
Sbjct: 104 YRASVGCSLVMLVIH--VLMVFVLQNGNVSH--CNSRIEVLSSEITRVIAWGGAIFAVFM 159
Query: 139 IIPNSAHVKFPWILRAWWFCSFLFSILCTALHTYL-RIRYRGQFRIQDYVDIIALLASTF 197
++ + + VK+PWILR WWFCSF+ I+ L Y +++ G +QDY + ++L S F
Sbjct: 160 VLRDKS-VKYPWILRGWWFCSFVLLIVRLGLDAYFGNVKHLG---VQDYAEFFSILPSIF 215
Query: 198 LFGISIQGKTGLLLHTASSDTTEPFLNVKADKQFKSKRDSPYGKSTLLQLVTFSWLNPLF 257
LFG+SI G T ++ + + +P L K Q + ++DSPYG++TL QLVTFSWLNPLF
Sbjct: 216 LFGLSIYGHTNVVFNVHNG-LEDPLLPEKCLDQERDEKDSPYGRATLFQLVTFSWLNPLF 274
Query: 258 AVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLDLVKEKEGSTNPSIYKAIFFFIRKKAA 317
AVG KPLE +DIPDV DSA FLS+ F++ L+ V+ K ST PSIYK I+ F RKKAA
Sbjct: 275 AVGYAKPLEQEDIPDVCKIDSANFLSHSFDETLNFVR-KNNSTKPSIYKTIYLFGRKKAA 333
Query: 318 INASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWI 377
INASFAVI+AATSYVGPYLI+DFVNFLT KK R+L SGYLLALAF+GAK +ET+AQRQWI
Sbjct: 334 INASFAVISAATSYVGPYLIDDFVNFLTHKKMRTLSSGYLLALAFVGAKTIETVAQRQWI 393
Query: 378 FGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMF 437
FGARQLGLRLRAAL+SH+Y+KGL LSS+SRQS +SGEI+NYMSVD+QRI+DF ++ N ++
Sbjct: 394 FGARQLGLRLRAALMSHIYQKGLRLSSRSRQSCSSGEILNYMSVDIQRITDFSWFLNTVW 453
Query: 438 MLPVQISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRAT 497
MLP+QISLA+YIL TNLG+GSL AL ATL VM+CNIP+ R+QK +Q KIM+AKDNRM+ T
Sbjct: 454 MLPIQISLAMYILHTNLGVGSLGALGATLVVMSCNIPMNRMQKSYQGKIMEAKDNRMKTT 513
Query: 498 SEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWGSPTFISVVTF 557
SEVL+NMKTLKLQAWDT++L+KLESLR+VE WLWKSLRL SAF+FWG+PTFISV+TF
Sbjct: 514 SEVLRNMKTLKLQAWDTQYLRKLESLRKVEHYWLWKSLRLIGFSAFVFWGAPTFISVITF 573
Query: 558 GACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQR 617
G C+LL I+LTAGRVLSALATFRMLQDPIFNLPDLLS +AQGKVSADR+A+YL EDEIQ+
Sbjct: 574 GVCVLLKIELTAGRVLSALATFRMLQDPIFNLPDLLSALAQGKVSADRVASYLHEDEIQQ 633
Query: 618 DAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLL 677
D++ YV + ++EF++E+ NGKFSW+ E+ +LD I LKVKRGMKVA+CGTVGSGKSSLL
Sbjct: 634 DSITYVSRDQTEFDIEIENGKFSWDLETRRASLDQINLKVKRGMKVAVCGTVGSGKSSLL 693
Query: 678 SCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVK 737
SCILGEI+K++GTVKI GTKAYVPQSPWIL+GNIRENILFGN Y+S KY+RT+ ACAL K
Sbjct: 694 SCILGEIEKLSGTVKIGGTKAYVPQSPWILSGNIRENILFGNDYESTKYNRTINACALAK 753
Query: 738 DFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFK 797
DFELF+ GDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLF+
Sbjct: 754 DFELFSCGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFE 813
Query: 798 DCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGAHS 857
DCLMG LK+K+++YVTHQVEFLPAAD+ILVM+NGRIAQAG FEELLKQNIGFEVLVGAHS
Sbjct: 814 DCLMGALKEKTIIYVTHQVEFLPAADLILVMQNGRIAQAGGFEELLKQNIGFEVLVGAHS 873
Query: 858 QALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHD-SEHELSLEITEKGGKLVQ 916
QALES++TVE S R Q E EL DST NVK +SQHD +++ S EIT+KGGKLVQ
Sbjct: 874 QALESIVTVENSIRKPQLTNTEKELCEDSTVNVKPKNSQHDLVQNKNSAEITDKGGKLVQ 933
Query: 917 EEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEP 976
EEERE+GSIGKEVY SYLT VK GA VPII+LAQSSFQ LQVASNYWMAWA P TSD E
Sbjct: 934 EEERERGSIGKEVYLSYLTTVKRGAFVPIIILAQSSFQALQVASNYWMAWACPTTSDTEV 993
Query: 977 ALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTP 1036
GMN +LLVY+LL +GS+LCVLLR MLVAITGL+TAQ LFTNML S+ RAPMAFFDSTP
Sbjct: 994 VTGMNFILLVYSLLAIGSALCVLLRGMLVAITGLQTAQTLFTNMLRSILRAPMAFFDSTP 1053
Query: 1037 TGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIW 1096
TGRI+NRAS DQ+V+DLE+A RLGWCAFSIIQ+ GTI VMSQ AW
Sbjct: 1054 TGRIINRASTDQTVVDLEMATRLGWCAFSIIQLTGTIVVMSQAAW--------------- 1098
Query: 1097 YQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRP 1156
+QYY PTARELARL+ IQR PILHHFAESL+GAATI AFDQEDRF NL LID+ SRP
Sbjct: 1099 -EQYYTPTARELARLSGIQRTPILHHFAESLSGAATIRAFDQEDRFFKTNLGLIDDFSRP 1157
Query: 1157 WFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASI 1216
WFHNVSAMEWL FRLN+LSNFVF FSLV+LVTLPEGIINPS+AGLAVTYGINLNVLQA++
Sbjct: 1158 WFHNVSAMEWLSFRLNVLSNFVFGFSLVLLVTLPEGIINPSLAGLAVTYGINLNVLQANV 1217
Query: 1217 IWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLP 1276
IWNICNAENK+ISVERILQYS + SEAPLV + CRPPSNWP GTI F NLQIRYA+H P
Sbjct: 1218 IWNICNAENKIISVERILQYSKIKSEAPLVIDNCRPPSNWPQDGTICFKNLQIRYADHFP 1277
Query: 1277 SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLR 1336
NISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP GSIIID VDI KIGLHDLR
Sbjct: 1278 X---NISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPREGSIIIDGVDICKIGLHDLR 1334
Query: 1337 SRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENG 1396
SRL IIPQDP++F+GTVRGNLDPL QY+D+++WEALDKCQLGDLVR K+EKL S+V ENG
Sbjct: 1335 SRLSIIPQDPSMFEGTVRGNLDPLEQYTDQEIWEALDKCQLGDLVRGKDEKLSSSVVENG 1394
Query: 1397 ENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHR 1456
ENWSVGQRQLFCLGR LLKKSSILVLDEATASVDSATDG+IQ IISQEFKDRTVVTIAHR
Sbjct: 1395 ENWSVGQRQLFCLGRALLKKSSILVLDEATASVDSATDGIIQNIISQEFKDRTVVTIAHR 1454
Query: 1457 IHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMRSQNFNSVAGR 1511
IHTVI SDLVLVLSDGRIAE+DSP LL+R+DSFFS+LIKEYS RSQNFN++A +
Sbjct: 1455 IHTVISSDLVLVLSDGRIAEFDSPKMLLKRDDSFFSKLIKEYSTRSQNFNNLANK 1509
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334186144|ref|NP_191575.2| ABC transporter C family member 9 [Arabidopsis thaliana] gi|374095362|sp|Q9M1C7.2|AB9C_ARATH RecName: Full=ABC transporter C family member 9; Short=ABC transporter ABCC.9; Short=AtABCC9; AltName: Full=ATP-energized glutathione S-conjugate pump 9; AltName: Full=Glutathione S-conjugate-transporting ATPase 9; AltName: Full=Multidrug resistance-associated protein 9 gi|332646498|gb|AEE80019.1| ABC transporter C family member 9 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2042 bits (5290), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1011/1501 (67%), Positives = 1210/1501 (80%), Gaps = 32/1501 (2%)
Query: 17 TAWLPLRSPCFWEHIISIVVQLGFLGLLLLQLART--TLFRRLGADFRDLVVDKYPYGVK 74
T WL L + + ISI +Q+ FL L+ LA + R G++ + + K VK
Sbjct: 18 TQWLQLGNSLCLKERISIAMQVTFLAFFLIHLALKWFGVVRNRGSNDVEEDLKKQSITVK 77
Query: 75 LGICYKASMVSSTLIFGTHFIILLTVMLNTGGEAEAVCNSGILAFSSRIMQVVSWASTLF 134
Y S++ S I GTH ILL + ++ + C+S + FS+ + Q SW
Sbjct: 78 QSFSYNISLLCSVSILGTHCFILLLLFRDS---VVSRCDSSVSVFSAEVSQSFSWLFVSV 134
Query: 135 LLCKIIPNSAHVKFPWILRAWWFCSFLFSI-----LCTALHTYLRIRYRGQFRIQDYVDI 189
++ KI VKFPW+LR+WW CSF+ S TA H L QDY D+
Sbjct: 135 VVVKIRERRL-VKFPWMLRSWWLCSFILSFSFDAHFITAKHEPLEF--------QDYADL 185
Query: 190 IALLASTFLFGISIQGKTGLLLHTASSDTTEPFLNVKADKQFKSKRDS-----PYGKSTL 244
LLAS FL +SI+GKTG L SS TEP L D+ ++K+DS PYG +TL
Sbjct: 186 TGLLASLFLLAVSIRGKTGFHL-LESSGNTEPLL--LGDQTEQNKKDSYSSSSPYGNATL 242
Query: 245 LQLVTFSWLNPLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLDLVKEKEGSTNPSI 304
Q +TFSW+NPLF++G K+PLE DD+PD+D+KDSA F S+ F+Q L KEKEG N
Sbjct: 243 FQRITFSWINPLFSLGYKRPLEKDDVPDIDVKDSARFCSHAFDQKLKTTKEKEGPGNAFF 302
Query: 305 YKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLG 364
Y ++ ++ +KAAINA FAV+NA+T+Y+GPYLINDFV FL++K+S+SL GYLLAL FL
Sbjct: 303 YNSVLRYVWRKAAINAVFAVVNASTAYIGPYLINDFVEFLSEKQSQSLNHGYLLALGFLT 362
Query: 365 AKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQ 424
AK+VET+ QRQWIFGARQLGLRLRAALISH+Y+KGL LSSQSRQSHTSGEIINYMSVDVQ
Sbjct: 363 AKIVETVTQRQWIFGARQLGLRLRAALISHIYQKGLVLSSQSRQSHTSGEIINYMSVDVQ 422
Query: 425 RISDFIFYSNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQKRFQS 484
RI+DFI+Y N ++MLP+QI AIYIL+ +LGLG+LAAL TL VM CN P+TR+Q+ +QS
Sbjct: 423 RITDFIWYVNNIWMLPIQIFSAIYILQKHLGLGALAALVTTLMVMACNYPLTRLQRNYQS 482
Query: 485 KIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFI 544
IM+AKD+RM+ATSE+LKNMK LKLQAWD +FL K+++LR+ E LWKSLRL A + FI
Sbjct: 483 DIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRLQAFTTFI 542
Query: 545 FWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSAD 604
WG+P+ ISVVTF CML+G++LTAG VLSALATF+MLQ PIF LPDLLS + Q KVSAD
Sbjct: 543 LWGAPSLISVVTFVTCMLMGVKLTAGAVLSALATFQMLQSPIFGLPDLLSALVQSKVSAD 602
Query: 605 RIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVA 664
RIA+YLQ+ E Q+DAVEY K +E VE+ NG FSW PESS PTLD I+LKVK GMKVA
Sbjct: 603 RIASYLQQSETQKDAVEYCSKDHTELSVEIENGAFSWEPESSRPTLDDIELKVKSGMKVA 662
Query: 665 ICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSC 724
+CG VGSGKSSLLS ILGEIQK+ GTV++SG +AYVPQSPWIL+G IR+NILFG+ Y+S
Sbjct: 663 VCGAVGSGKSSLLSSILGEIQKLKGTVRVSGKQAYVPQSPWILSGTIRDNILFGSMYESE 722
Query: 725 KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPF 784
KY+RTV+ACAL+KDFELF++GDLTEIGERGINMSGGQKQRIQIARAVYQ+ADIYLLDDPF
Sbjct: 723 KYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIARAVYQNADIYLLDDPF 782
Query: 785 SAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLK 844
SAVDAHTG +LF+DCLMGILKDK+VLYVTHQVEFLPAAD+ILVM+NGR+ QAG+FEELLK
Sbjct: 783 SAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQNGRVMQAGKFEELLK 842
Query: 845 QNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELS 904
QNIGFEVLVGAH++AL+S+L++E SSR ++ + + D+ S + + + DSEH +S
Sbjct: 843 QNIGFEVLVGAHNEALDSILSIEKSSRNFKEGSKD-----DTASIAESLQTHCDSEHNIS 897
Query: 905 LEITEKGGKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWM 964
E +K KLVQ+EE EKG IGKEVY +YLT VKGG LVP I+LAQS FQ+LQ+ASNYWM
Sbjct: 898 TENKKKEAKLVQDEETEKGVIGKEVYLAYLTTVKGGLLVPFIILAQSCFQMLQIASNYWM 957
Query: 965 AWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSV 1024
AW +PPT++ P LGM +LLVY LL GSSLCVL R +LVAI GL TA+ F+ ML S+
Sbjct: 958 AWTAPPTAESIPKLGMGRILLVYALLAAGSSLCVLARTILVAIGGLSTAETFFSRMLCSI 1017
Query: 1025 HRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVF 1084
RAPM+FFDSTPTGRILNRAS DQSVLDLE+A +LGWCAFSIIQI+GTI VMSQVAWQV
Sbjct: 1018 FRAPMSFFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQVAWQVC 1077
Query: 1085 VIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTN 1144
VIFIPV C++YQ+YY PTAREL+R++ ++RAPILHHFAESLAGA TI AFDQ DRF +
Sbjct: 1078 VIFIPVAVACVFYQRYYTPTARELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFIS 1137
Query: 1145 ANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVT 1204
+NL LID+HSRPWFH SAMEWL FRLNLLS+FVFAFSLV+LVTLPEG+INPSIAGL VT
Sbjct: 1138 SNLVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIAGLGVT 1197
Query: 1205 YGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISF 1264
YG++LNVLQA++IWNICNAENKMISVERILQYS +PSEAPLV + RP NWP+VG+I F
Sbjct: 1198 YGLSLNVLQATVIWNICNAENKMISVERILQYSKIPSEAPLVIDGHRPLDNWPNVGSIVF 1257
Query: 1265 HNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN 1324
+LQ+RYAEH P+VLKNI+C FPG KK+GVVGRTGSGKSTLIQA+FRIVEP+ G+I+IDN
Sbjct: 1258 RDLQVRYAEHFPAVLKNITCEFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSQGTIVIDN 1317
Query: 1325 VDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAK 1384
VDITKIGLHDLRSRLGIIPQDP LFDGT+R NLDPL QY+D ++WEA+DKCQLGD++RAK
Sbjct: 1318 VDITKIGLHDLRSRLGIIPQDPALFDGTIRLNLDPLAQYTDHEIWEAIDKCQLGDVIRAK 1377
Query: 1385 EEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQE 1444
+E+LD+TV ENGENWSVGQRQL CLGR LLKKS+ILVLDEATASVDSATDGVIQKII+QE
Sbjct: 1378 DERLDATVVENGENWSVGQRQLVCLGRVLLKKSNILVLDEATASVDSATDGVIQKIINQE 1437
Query: 1445 FKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMRSQN 1504
FKDRTVVTIAHRIHTVI+SDLVLVLSDGRIAE+DSP KLL+REDSFFS+LIKEYS+RS +
Sbjct: 1438 FKDRTVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLLQREDSFFSKLIKEYSLRSNH 1497
Query: 1505 F 1505
F
Sbjct: 1498 F 1498
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7076769|emb|CAB75931.1| multi resistance protein homolog [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2011 bits (5211), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1001/1501 (66%), Positives = 1198/1501 (79%), Gaps = 48/1501 (3%)
Query: 17 TAWLPLRSPCFWEHIISIVVQLGFLGLLLLQLART--TLFRRLGADFRDLVVDKYPYGVK 74
T WL L + + ISI +Q+ FL L+ LA + R G++ + + K VK
Sbjct: 18 TQWLQLGNSLCLKERISIAMQVTFLAFFLIHLALKWFGVVRNRGSNDVEEDLKKQSITVK 77
Query: 75 LGICYKASMVSSTLIFGTHFIILLTVMLNTGGEAEAVCNSGILAFSSRIMQVVSWASTLF 134
Y S++ S I GTH ILL + ++ + C+S + FS+ + Q SW
Sbjct: 78 QSFSYNISLLCSVSILGTHCFILLLLFRDS---VVSRCDSSVSVFSAEVSQSFSWLFVSV 134
Query: 135 LLCKIIPNSAHVKFPWILRAWWFCSFLFSI-----LCTALHTYLRIRYRGQFRIQDYVDI 189
++ KI VKFPW+LR+WW CSF+ S TA H L QDY D+
Sbjct: 135 VVVKIRERRL-VKFPWMLRSWWLCSFILSFSFDAHFITAKHEPLEF--------QDYADL 185
Query: 190 IALLASTFLFGISIQGKTGLLLHTASSDTTEPFLNVKADKQFKSKRDS-----PYGKSTL 244
LLAS FL +SI+GKTG L SS TEP L D+ ++K+DS PYG +TL
Sbjct: 186 TGLLASLFLLAVSIRGKTGFHL-LESSGNTEPLL--LGDQTEQNKKDSYSSSSPYGNATL 242
Query: 245 LQLVTFSWLNPLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLDLVKEKEGSTNPSI 304
Q +TFSW+NPLF++G K+PLE DD+PD+D+KDSA F S+ F+Q L KEKEG N
Sbjct: 243 FQRITFSWINPLFSLGYKRPLEKDDVPDIDVKDSARFCSHAFDQKLKTTKEKEGPGNAFF 302
Query: 305 YKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLG 364
Y ++ ++ +KAAINA FAV+NA+T+Y+GPYLINDFV FL++K+S+SL GYLLAL FL
Sbjct: 303 YNSVLRYVWRKAAINAVFAVVNASTAYIGPYLINDFVEFLSEKQSQSLNHGYLLALGFLT 362
Query: 365 AKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQ 424
AK+VET+ QRQWIFGARQLGLRLRAALISH+Y+KGL LSSQSRQSHTSGEIINYMSVDVQ
Sbjct: 363 AKIVETVTQRQWIFGARQLGLRLRAALISHIYQKGLVLSSQSRQSHTSGEIINYMSVDVQ 422
Query: 425 RISDFIFYSNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQKRFQS 484
RI+DFI+Y N ++MLP+QI AIYIL+ +LGLG+LAAL TL VM CN P+TR+Q+ +QS
Sbjct: 423 RITDFIWYVNNIWMLPIQIFSAIYILQKHLGLGALAALVTTLMVMACNYPLTRLQRNYQS 482
Query: 485 KIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFI 544
IM+AKD+RM+ATSE+LKNMK LKLQAWD +FL K+++LR+ E LWKSLRL A + FI
Sbjct: 483 DIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRLQAFTTFI 542
Query: 545 FWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSAD 604
WG+P+ ISVVTF CML+G++LTAG VLSALATF+MLQ PIF LPDLLS + Q KVSAD
Sbjct: 543 LWGAPSLISVVTFVTCMLMGVKLTAGAVLSALATFQMLQSPIFGLPDLLSALVQSKVSAD 602
Query: 605 RIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVA 664
RIA+YLQ+ E Q+DAVEY K +E VE+ NG FSW PESS PTLD I+LKVK GMKVA
Sbjct: 603 RIASYLQQSETQKDAVEYCSKDHTELSVEIENGAFSWEPESSRPTLDDIELKVKSGMKVA 662
Query: 665 ICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSC 724
+CG VGSGKSSLLS ILGEIQK+ GTV++SG +AYVPQSPWIL+G IR+NILFG+ Y+S
Sbjct: 663 VCGAVGSGKSSLLSSILGEIQKLKGTVRVSGKQAYVPQSPWILSGTIRDNILFGSMYESE 722
Query: 725 KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPF 784
KY+RTV+ACAL+KDFELF++GDLTEIGERGINMSGGQKQRIQIARAVYQ+ADIYLLDDPF
Sbjct: 723 KYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIARAVYQNADIYLLDDPF 782
Query: 785 SAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLK 844
SAVDAHTG +LF+DCLMGILKDK+VLYVTHQVEFLPAAD+ILVM+NGR+ QAG+FEELLK
Sbjct: 783 SAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQNGRVMQAGKFEELLK 842
Query: 845 QNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELS 904
QNIGFEVLVGAH++AL+S+L++E SSR ++ + + D+ S + + + DSEH +S
Sbjct: 843 QNIGFEVLVGAHNEALDSILSIEKSSRNFKEGSKD-----DTASIAESLQTHCDSEHNIS 897
Query: 905 LEITEKGGKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWM 964
E +K KLVQ+EE EKG IGKEVY +YLT VKGG LVP I+LAQS FQ+LQ+ASNYWM
Sbjct: 898 TENKKKEAKLVQDEETEKGVIGKEVYLAYLTTVKGGLLVPFIILAQSCFQMLQIASNYWM 957
Query: 965 AWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSV 1024
AW +PPT++ P LGM +LLVY LL GSSLCVL R +LVAI GL TA+ F+ ML S+
Sbjct: 958 AWTAPPTAESIPKLGMGRILLVYALLAAGSSLCVLARTILVAIGGLSTAETFFSRMLCSI 1017
Query: 1025 HRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVF 1084
RAPM+FFDSTPTGRILNRAS DQSVLDLE+A +LGWCAFSIIQI+GTI VMSQVAW
Sbjct: 1018 FRAPMSFFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQVAW--- 1074
Query: 1085 VIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTN 1144
Q+YY PTAREL+R++ ++RAPILHHFAESLAGA TI AFDQ DRF +
Sbjct: 1075 -------------QRYYTPTARELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFIS 1121
Query: 1145 ANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVT 1204
+NL LID+HSRPWFH SAMEWL FRLNLLS+FVFAFSLV+LVTLPEG+INPSIAGL VT
Sbjct: 1122 SNLVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIAGLGVT 1181
Query: 1205 YGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISF 1264
YG++LNVLQA++IWNICNAENKMISVERILQYS +PSEAPLV + RP NWP+VG+I F
Sbjct: 1182 YGLSLNVLQATVIWNICNAENKMISVERILQYSKIPSEAPLVIDGHRPLDNWPNVGSIVF 1241
Query: 1265 HNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN 1324
+LQ+RYAEH P+VLKNI+C FPG KK+GVVGRTGSGKSTLIQA+FRIVEP+ G+I+IDN
Sbjct: 1242 RDLQVRYAEHFPAVLKNITCEFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSQGTIVIDN 1301
Query: 1325 VDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAK 1384
VDITKIGLHDLRSRLGIIPQDP LFDGT+R NLDPL QY+D ++WEA+DKCQLGD++RAK
Sbjct: 1302 VDITKIGLHDLRSRLGIIPQDPALFDGTIRLNLDPLAQYTDHEIWEAIDKCQLGDVIRAK 1361
Query: 1385 EEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQE 1444
+E+LD+TV ENGENWSVGQRQL CLGR LLKKS+ILVLDEATASVDSATDGVIQKII+QE
Sbjct: 1362 DERLDATVVENGENWSVGQRQLVCLGRVLLKKSNILVLDEATASVDSATDGVIQKIINQE 1421
Query: 1445 FKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMRSQN 1504
FKDRTVVTIAHRIHTVI+SDLVLVLSDGRIAE+DSP KLL+REDSFFS+LIKEYS+RS +
Sbjct: 1422 FKDRTVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLLQREDSFFSKLIKEYSLRSNH 1481
Query: 1505 F 1505
F
Sbjct: 1482 F 1482
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820872|ref|XP_002878319.1| ATMRP9 [Arabidopsis lyrata subsp. lyrata] gi|297324157|gb|EFH54578.1| ATMRP9 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2009 bits (5205), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1000/1497 (66%), Positives = 1197/1497 (79%), Gaps = 37/1497 (2%)
Query: 15 FQTAWLPLRSPCFWEHIISIVVQLGFLGLLLLQLART--TLFRRLGADFRDLVVDKYPYG 72
+T WL L + + ISI Q+ FL ++ LA + R G++ + + K
Sbjct: 16 LRTQWLQLENSLCLKERISIATQVAFLAFFVIHLALKWFGVVRNRGSNDVEEDLKKQSIT 75
Query: 73 VKLGICYKASMVSSTLIFGTHFIILLTVMLNTGGEAEAVCNSGILAFSSRIMQVVSWAST 132
VK Y S++ S I GTH ILL + ++ + C+S + FS+ I Q SW
Sbjct: 76 VKQSFSYNISLLCSVSILGTHCFILLLLFRDS---VVSRCDSSVSVFSAEISQAFSWLIV 132
Query: 133 LFLLCKIIPNSAHVKFPWILRAWWFCSFLFSILCTALHTYLRIRYRGQFRIQDYVDIIAL 192
++ KI VKFPW+LR+WW CSF+ S A + G QDY D+I L
Sbjct: 133 SVVVVKIRERRL-VKFPWMLRSWWLCSFILSFAFEAQFITAKHEPLG---FQDYADLIGL 188
Query: 193 LASTFLFGISIQGKTGLLLHTASSDTTEPFLNVKADKQFKSKRD----SPYGKSTLLQLV 248
LAS FL +SI+G TG L S TEP L +Q +K+D SPYG +TL Q +
Sbjct: 189 LASLFLIAVSIRGNTGFRL-LESGGITEPLLLDGQTEQ--NKKDVSSTSPYGNATLFQRI 245
Query: 249 TFSWLNPLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLDLVKEKEGSTNPSIYKAI 308
TFSW+NPLF++G K+PL+ DD+PD+D+KDSA F S F+Q L + KEKEG N Y ++
Sbjct: 246 TFSWINPLFSLGYKRPLQKDDVPDIDVKDSARFCSYAFDQKLKITKEKEGPGNAFFYNSV 305
Query: 309 FFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMV 368
++ +KAAINA FAV+NA+T+Y+GPYLINDFV FL +K+S+SL GYLLAL FL AK+V
Sbjct: 306 LRYVWRKAAINAVFAVVNASTAYIGPYLINDFVEFLGEKQSQSLNHGYLLALGFLSAKIV 365
Query: 369 ETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISD 428
ET+ QRQWIFGARQLGLRLRAALISH+Y+KGL LSSQSRQSHTSGEIINYMSVDVQRI+D
Sbjct: 366 ETVTQRQWIFGARQLGLRLRAALISHIYQKGLVLSSQSRQSHTSGEIINYMSVDVQRITD 425
Query: 429 FIFYSNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQKRFQSKIMD 488
FI+Y N ++MLP+QI AIYIL+ +LGLG+LAAL TL VM CN P+TR+Q+ +QS IM+
Sbjct: 426 FIWYVNNIWMLPIQIFSAIYILQKHLGLGALAALVTTLMVMACNYPLTRLQRNYQSDIMN 485
Query: 489 AKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWGS 548
AKD+RM+ATSE+LKNMK LKLQAWD +FL K+++LR+ E LWKSLRL A + FI WG+
Sbjct: 486 AKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRLQAFTTFILWGA 545
Query: 549 PTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAA 608
P+ ISVVTF CML+G++LTAG VLSALATF+MLQ PIF LPDLLS + Q KVSADRIA+
Sbjct: 546 PSLISVVTFVTCMLMGVKLTAGAVLSALATFQMLQSPIFGLPDLLSALVQSKVSADRIAS 605
Query: 609 YLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGT 668
YLQ+ E Q+DAVEY K +E VE+ NG FSW PE S PTLD I+LKVKRGMKVAICG
Sbjct: 606 YLQQSETQKDAVEYCSKDHTELSVEIENGAFSWGPEPSRPTLDEIELKVKRGMKVAICGA 665
Query: 669 VGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDR 728
VGSGKSSLLS ILGEIQK+ GTV++SG +AYVPQSPWIL+G IR+NILFG+ Y+S KY+R
Sbjct: 666 VGSGKSSLLSSILGEIQKLKGTVRVSGKQAYVPQSPWILSGTIRDNILFGSIYESEKYER 725
Query: 729 TVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVD 788
TV+ACAL+KDFELF++GDLTEIGERGINMSGGQKQRIQIARAVYQ+ADIYLLDDPFSAVD
Sbjct: 726 TVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIARAVYQNADIYLLDDPFSAVD 785
Query: 789 AHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIG 848
AHTG +LF++CLMGILKDK+VLYVTHQVEFLPAAD+ILVM+NGR+ QAG+FEELLKQNIG
Sbjct: 786 AHTGRELFEECLMGILKDKTVLYVTHQVEFLPAADLILVMQNGRVMQAGKFEELLKQNIG 845
Query: 849 FEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEIT 908
FEVLVGAH++AL+S+L++E SSR ++ E D+ S + + +Q DSEH +S E
Sbjct: 846 FEVLVGAHNEALDSILSIEKSSRNFKE-----ESKDDTASIAESLQTQCDSEHNISTENK 900
Query: 909 EKGGKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWAS 968
+K KLVQ+EE EKG IGKEVY +YLT VKGG LVP+I+LAQS FQ+LQ+ASNYWMAW +
Sbjct: 901 KKEAKLVQDEETEKGVIGKEVYLAYLTTVKGGLLVPLIILAQSCFQMLQIASNYWMAWTA 960
Query: 969 PPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAP 1028
PPT++ P LGM+ +LLVY LL GSSLCVL R +LVAI GL TA+ F+ ML S+ RAP
Sbjct: 961 PPTAESIPKLGMDRILLVYALLAAGSSLCVLARTVLVAIGGLLTAETFFSRMLCSIFRAP 1020
Query: 1029 MAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFI 1088
M+FFDSTPTGRILNRAS DQSVLDLE+A +LGWCAFSIIQI+GTI VMSQVAW
Sbjct: 1021 MSFFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQVAW------- 1073
Query: 1089 PVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLS 1148
Q+YY PTAREL+R++ ++RAPILHHFAESLAGA TI AFDQ DRF ++NL
Sbjct: 1074 ---------QRYYTPTARELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSNLI 1124
Query: 1149 LIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGIN 1208
LIDNHSRPWFH SAMEWL FRLNLLS+FVFAFSLV+LVTLPEG+INPSIAGL VTYG++
Sbjct: 1125 LIDNHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIAGLGVTYGLS 1184
Query: 1209 LNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQ 1268
LNVLQA++IWNICNAENKMISVERILQYS +PSEAPLV ++ RP NWP+ G+I F +LQ
Sbjct: 1185 LNVLQATVIWNICNAENKMISVERILQYSKIPSEAPLVIDDHRPLDNWPNSGSIVFKDLQ 1244
Query: 1269 IRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDIT 1328
+RYAE+ P+VLKNI+C FPG KK+GVVGRTGSGKSTLIQA+FRIVEP+ G+I+IDNVDIT
Sbjct: 1245 VRYAENFPAVLKNINCEFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSQGTIVIDNVDIT 1304
Query: 1329 KIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKL 1388
KIGLHDLRSRLGIIPQDP LFDGT+R NLDPL QY+D+++WEALDKCQLGD++RAK+EKL
Sbjct: 1305 KIGLHDLRSRLGIIPQDPALFDGTIRLNLDPLAQYTDREIWEALDKCQLGDVIRAKDEKL 1364
Query: 1389 DSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDR 1448
D+TV ENGENWSVGQRQL CLGR LLKKS+ILVLDEATASVDSATDGVIQKII+QEFKDR
Sbjct: 1365 DATVVENGENWSVGQRQLVCLGRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 1424
Query: 1449 TVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMRSQNF 1505
TVVTIAHRIHTVI+SDLVLVLSDGRIAE+DSP KLL+REDSFFS+LIKEYS+RS +F
Sbjct: 1425 TVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLLQREDSFFSKLIKEYSLRSNHF 1481
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414585697|tpg|DAA36268.1| TPA: hypothetical protein ZEAMMB73_974996 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 1954 bits (5062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 956/1515 (63%), Positives = 1187/1515 (78%), Gaps = 32/1515 (2%)
Query: 12 LLHFQTAWLPLRSPCFWEHIISIVVQLGFLGLLLLQLARTTLFRRLGADFRDLVVDKYPY 71
+LH W L SPCFW + ++QL F+ +L Q LF++ +R + P
Sbjct: 39 ILHHMQEWQDLYSPCFW-MVTFALIQLMFIMSILAQF----LFKKFRW-WRQRLKGSAPE 92
Query: 72 G-----------VKLGICYKASMVSSTLIFGTHFIILLTVMLNTGGEAEAVCNSGILAFS 120
+KL I YKA LI G+H + + + L+ E + + F
Sbjct: 93 SNKQHQEHKITDIKLDISYKACKACCLLILGSHVLRAVFLQLH-----ERISDCKYPPFI 147
Query: 121 -SRIMQVVSWASTLFLLCKIIPNSAHVKFPWILRAWWFCSFLFSILCTALHTYLRIRYRG 179
+QV+SW L L + K P ++R WW SFL S+ +
Sbjct: 148 ICEGLQVLSWI-ILSLAVFSFQKAKSTKIPKVIRTWWIFSFLQSVAIVVFDLRSILATHE 206
Query: 180 QFRIQDYVDIIALLASTFLFGISIQGKTGLLLHTASSDTTEPFLNVKADKQFKSKRDSPY 239
++++D+ L+ T+LF IS++GKTG+ S TE LN +Q + KR PY
Sbjct: 207 DIGFEEWIDMCMLVVCTYLFAISVRGKTGIRF--TDSSVTEALLNPSVGQQAEVKRPCPY 264
Query: 240 GKSTLLQLVTFSWLNPLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLDLVKEKEGS 299
G++ +L+LVTFSW+NP+F++G KKPLE +++PDVD KD+AEFLS+ F++ + V+ + G
Sbjct: 265 GRANILELVTFSWMNPVFSIGYKKPLEKNEVPDVDGKDAAEFLSDSFKKIIGDVEHRHGL 324
Query: 300 TNPSIYKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLA 359
+ SIY+A+F FI +KA INA FA+++A+ SYVGP LIND V FL ++ L+ GY+LA
Sbjct: 325 STLSIYRAMFLFIGRKAIINAGFAILSASASYVGPSLINDLVKFLGGERQYGLKRGYILA 384
Query: 360 LAFLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYM 419
+ FL AK+VETIAQRQWIFGARQLG+RLRAALISH+Y+KGL LS SRQ HTSGEIINYM
Sbjct: 385 VVFLSAKVVETIAQRQWIFGARQLGMRLRAALISHIYQKGLRLSCSSRQKHTSGEIINYM 444
Query: 420 SVDVQRISDFIFYSNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQ 479
SVD+QRI+D I+Y+NY++MLP+Q+SLA+Y+L TNLG+G+ A LAATL +M CNIP+TR+Q
Sbjct: 445 SVDIQRITDVIWYTNYIWMLPIQLSLAVYVLHTNLGVGAWAGLAATLAIMACNIPLTRMQ 504
Query: 480 KRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSA 539
KR Q+KIM AKDNRM+AT+EVL++MK LKLQAWD ++LQKLESLR E WLW+S+RLSA
Sbjct: 505 KRLQAKIMVAKDNRMKATTEVLRSMKILKLQAWDMKYLQKLESLRGEEYNWLWRSVRLSA 564
Query: 540 TSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQG 599
+ FIFWGSP FIS +TFG+C+L+GI LTAG VLSALATFRMLQDPIF LPDLLS AQG
Sbjct: 565 LTTFIFWGSPAFISSITFGSCILMGIPLTAGTVLSALATFRMLQDPIFTLPDLLSVFAQG 624
Query: 600 KVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKR 659
KVSADR+A YL+E+E++ DAV VP+ ++++VE+ +G FSW E++SPTL ++LKVKR
Sbjct: 625 KVSADRVAKYLEEEELKCDAVTQVPRNDTDYDVEIDHGIFSWELETTSPTLTDVELKVKR 684
Query: 660 GMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGN 719
GMKVAICG VGSGKSSLLSCILGE+ K+ GTV++SG KAYVPQ+ WIL+GNIRENILFGN
Sbjct: 685 GMKVAICGIVGSGKSSLLSCILGEMPKLDGTVRVSGRKAYVPQTAWILSGNIRENILFGN 744
Query: 720 QYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYL 779
+D KY+ ++ACAL KDFELFA+GDLTEIGERGINMSGGQKQRIQIAR+VY+DADIYL
Sbjct: 745 THDKEKYENIIQACALTKDFELFANGDLTEIGERGINMSGGQKQRIQIARSVYEDADIYL 804
Query: 780 LDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRF 839
DDPFSAVDAHTG+QLFKDC+MGILKDK+VLYVTHQVEFLPAAD+ILVM++G+I Q G+F
Sbjct: 805 FDDPFSAVDAHTGSQLFKDCVMGILKDKTVLYVTHQVEFLPAADLILVMQDGKIVQKGKF 864
Query: 840 EELLKQNIGFEVLVGAHSQALESVLTVETSSR----TSQDPTPESELNSDSTSNVKLVH- 894
+ELL+QNIGFE +VGAHSQALESV+ E+SSR + E E ++++ ++ +L
Sbjct: 865 DELLQQNIGFEAIVGAHSQALESVINAESSSRIQSGNQKSADSEDEFDTENETDDQLQGI 924
Query: 895 SQHDSEHELSLEITEKGGKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQ 954
++ +S H++S +I++K G+L QEEEREKG IGK+VYW+YL AV GGALVP+ + AQS FQ
Sbjct: 925 TKQESAHDVSQDISDK-GRLTQEEEREKGGIGKKVYWTYLRAVHGGALVPVTIAAQSFFQ 983
Query: 955 VLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQ 1014
+ QVASNYWMAWASPPT+ P +G+ ++ VY L++GS+LCVL R++LV++ GL T++
Sbjct: 984 IFQVASNYWMAWASPPTTATTPTVGLGLLFSVYIALSMGSALCVLFRSLLVSLIGLLTSE 1043
Query: 1015 KLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIG 1074
+ F NMLH + RAPM+FFDSTPTGRILNRASNDQSVLDLE+A +LGWC FSIIQILGTIG
Sbjct: 1044 RFFKNMLHCILRAPMSFFDSTPTGRILNRASNDQSVLDLEIANKLGWCVFSIIQILGTIG 1103
Query: 1075 VMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIH 1134
VMSQVAW VF IF+PVT IC Q+YYIPTARELARL++IQRAPILHHFAESLAGA++I
Sbjct: 1104 VMSQVAWPVFAIFVPVTVICFLCQRYYIPTARELARLSQIQRAPILHHFAESLAGASSIR 1163
Query: 1135 AFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGII 1194
A+ Q+DRF ANL L+DNHSRPWFHNVSAMEWL FRLN+LSNFVFAFSL +LV+LPEG I
Sbjct: 1164 AYAQKDRFRKANLGLVDNHSRPWFHNVSAMEWLSFRLNMLSNFVFAFSLTLLVSLPEGFI 1223
Query: 1195 NPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPS 1254
NPSIAGLAVTY +NLN ASIIWNICN ENKMISVERI+QYS +PSEAPL+ + RPP+
Sbjct: 1224 NPSIAGLAVTYALNLNSQLASIIWNICNTENKMISVERIMQYSRIPSEAPLIVDHYRPPN 1283
Query: 1255 NWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE 1314
+WPD GTI+ +L++RYAEHLPSVL+NISCT PGRKKVG+VGRTGSGKST IQA+FRI+E
Sbjct: 1284 SWPDAGTINIRSLEVRYAEHLPSVLRNISCTIPGRKKVGIVGRTGSGKSTFIQALFRIIE 1343
Query: 1315 PTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDK 1374
P G+I IDNVDI KIGLHDLR RL IIPQDPT+F+GTVRGNLDPL +Y D +VWE LDK
Sbjct: 1344 PRGGTIQIDNVDILKIGLHDLRGRLSIIPQDPTMFEGTVRGNLDPLNEYPDHRVWEILDK 1403
Query: 1375 CQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATD 1434
CQLGD+VR +KLDS V ENGENWSVGQRQLFCLGR LLK+S++LVLDEATASVDS+TD
Sbjct: 1404 CQLGDIVRQNPKKLDSIVVENGENWSVGQRQLFCLGRVLLKRSNVLVLDEATASVDSSTD 1463
Query: 1435 GVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQL 1494
VIQ I +EF+ TV+TIAHRIHTVIDSDL+LV S+GRI EYD+P+KLLE E S FS+L
Sbjct: 1464 AVIQGTIREEFRKCTVLTIAHRIHTVIDSDLILVFSEGRIIEYDTPSKLLENESSEFSRL 1523
Query: 1495 IKEYSMRSQNFNSVA 1509
IKEYS RS F+ A
Sbjct: 1524 IKEYSRRSHGFSGTA 1538
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1513 | ||||||
| TAIR|locus:2090029 | 1514 | ABCC3 "ATP-binding cassette C3 | 0.931 | 0.931 | 0.499 | 0.0 | |
| TAIR|locus:2020235 | 1514 | ABCC5 "ATP-binding cassette C5 | 0.936 | 0.935 | 0.5 | 0.0 | |
| TAIR|locus:2090049 | 1493 | ABCC7 "ATP-binding cassette C7 | 0.907 | 0.919 | 0.492 | 0.0 | |
| TAIR|locus:2090039 | 1466 | ABCC6 "ATP-binding cassette C6 | 0.840 | 0.866 | 0.516 | 0.0 | |
| TAIR|locus:2081755 | 1539 | ABCC14 "ATP-binding cassette C | 0.415 | 0.408 | 0.442 | 2.4e-278 | |
| TAIR|locus:2043268 | 1516 | ABCC4 "ATP-binding cassette C4 | 0.889 | 0.887 | 0.403 | 3e-275 | |
| TAIR|locus:2077750 | 1453 | ABCC10 "ATP-binding cassette C | 0.392 | 0.408 | 0.468 | 6.8e-272 | |
| UNIPROTKB|I3L4X2 | 1440 | ABCC1 "Multidrug resistance-as | 0.415 | 0.436 | 0.352 | 4.1e-207 | |
| UNIPROTKB|P33527 | 1531 | ABCC1 "Multidrug resistance-as | 0.415 | 0.410 | 0.352 | 6.3e-205 | |
| DICTYBASE|DDB_G0284867 | 1593 | abcC8 "ABC transporter C famil | 0.390 | 0.370 | 0.370 | 2.8e-203 |
| TAIR|locus:2090029 ABCC3 "ATP-binding cassette C3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3590 (1268.8 bits), Expect = 0., P = 0.
Identities = 719/1439 (49%), Positives = 986/1439 (68%)
Query: 86 STLIFGTHFIILLTVMLNTGG----EAEAVCNSGILAFSSRIMQVVSWASTLFLLCKIIP 141
S L +L V+++ G E+ + N +++ ++ +VSW L +
Sbjct: 82 SALFCSLALSLLNLVLMSLSGFYWYESGWLDNEQLVSSLGFLLGMVSWG-VLSICLHRCR 140
Query: 142 NSAHVKFPWILRAWWFCSFLFSILCTALHT-YLRIRYRGQFRIQDYV-DIIALLASTFLF 199
+ H K P++LR W F + C +L ++ R + V DI+A +A+ FL
Sbjct: 141 DCEHKKAPFLLRLWLV--FYLVVSCYSLVVDFVMYERRETVPVHLLVFDIVAFIAAVFLG 198
Query: 200 GISIQGKTGLLLHTASSDTTEPFLN-----------VKADKQFKSKRDSPYGKSTLLQLV 248
+++ K ++ EP LN V+ +K S +PY ++ +L L+
Sbjct: 199 YVAVLKKDR---SNSNGVLEEPLLNGGDSRVGGDDSVELNKTNGSGEATPYSRAGILSLL 255
Query: 249 TFSWLNPLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLDLVK--EKEGSTNPSIYK 306
TFSW++PL +G KK L+L+D+P + DS L+ +F L+ E+ G T + K
Sbjct: 256 TFSWMSPLIDIGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLESPDGGERSGVTTFKLIK 315
Query: 307 AIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAK 366
A++F + + + A FA I SYVGP LI+ FV +L ++ + E GY+L + F AK
Sbjct: 316 ALYFTAQWEILVTAFFAFIYTVASYVGPALIDTFVQYLNGRRQYNHE-GYVLVITFFAAK 374
Query: 367 MVETIAQRQWIFXXXXXXXXXXXXXISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRI 426
+VE ++QR W F ++ +Y KGL LS QS+Q TSGEIIN+M+VD +RI
Sbjct: 375 IVECLSQRHWFFRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRTSGEIINFMTVDAERI 434
Query: 427 SDFIFYSNYMFMLPVQISLAIYILRTNXXXXXXXXXXXXXXVMTCNIPITRIQKRFQSKI 486
+F +Y + +M+ +Q+ LA++IL N VM N P R+Q+RFQ K+
Sbjct: 435 GNFSWYMHDPWMVLLQVGLALWILYRNLGLASIAALVATIIVMLINFPFGRMQERFQEKL 494
Query: 487 MDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFW 546
M+AKD+RM++TSE+L+NM+ LKLQ W+ +FL K+ LR+ E WL K + SA +F+FW
Sbjct: 495 MEAKDSRMKSTSEILRNMRILKLQGWEMKFLSKIFDLRKSEEGWLKKYVYNSAVISFVFW 554
Query: 547 GSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRI 606
G+PT +SV TFGAC+LLGI L +G++LSALATFR+LQ+PI+NLPD +S I Q KVS DR+
Sbjct: 555 GAPTLVSVSTFGACILLGIPLESGKILSALATFRILQEPIYNLPDTISMIVQTKVSLDRL 614
Query: 607 AAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAIC 666
A+YL D +Q D VE +PKG S+ VEV+N SW+ SS+PTL I KV GMKVA+C
Sbjct: 615 ASYLCLDNLQPDIVERLPKGSSDVAVEVINSTLSWDVSSSNPTLKDINFKVFPGMKVAVC 674
Query: 667 GTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKY 726
GTVGSGKSSLLS +LGE+ K++G++K+ GTKAYV QSPWI +G I +NILFG + +Y
Sbjct: 675 GTVGSGKSSLLSSLLGEVPKVSGSLKVCGTKAYVAQSPWIQSGKIEDNILFGKPMERERY 734
Query: 727 DRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSA 786
D+ +EAC+L KD E+ + GD T IGERGIN+SGGQKQRIQIARA+YQDADIYL DDPFSA
Sbjct: 735 DKVLEACSLSKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSA 794
Query: 787 VDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846
VDAHTG+ LFK+ L+G+L KSV+YVTHQVEFLPAAD+ILVM++GRI+QAG++ ++L
Sbjct: 795 VDAHTGSHLFKEVLLGLLCSKSVIYVTHQVEFLPAADLILVMKDGRISQAGKYNDILNSG 854
Query: 847 IGFEVLVGAHSQALESVLTVETSSRTSQDPT-PESELNSDSTSNVKLVHSQHDSEHELSL 905
F L+GAH +AL V +V+ +S + + E+ + D+ + + + SQ D +++ L
Sbjct: 855 TDFMELIGAHQEALAVVDSVDANSVSEKSALGQENVIVKDAIAVDEKLESQ-DLKND-KL 912
Query: 906 EITEKGGKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMA 965
E E +++QEEEREKGS+ +VYW Y+T GGALVP ILL Q FQ+LQ+ SNYWMA
Sbjct: 913 ESVEPQRQIIQEEEREKGSVALDVYWKYITLAYGGALVPFILLGQVLFQLLQIGSNYWMA 972
Query: 966 WASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVH 1025
WA+P + D + + ++ +++VY L GSSLC+LLRA L+ G +TA +LF M H +
Sbjct: 973 WATPVSEDVQAPVKLSTLMIVYVALAFGSSLCILLRATLLVTAGYKTATELFHKMHHCIF 1032
Query: 1026 RAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFV 1085
R+PM+FFDSTP+GRI++RAS DQS +DLEL + G A ++IQ++G IGVMSQV+W VF+
Sbjct: 1033 RSPMSFFDSTPSGRIMSRASTDQSAVDLELPYQFGSVAITVIQLIGIIGVMSQVSWLVFL 1092
Query: 1086 IFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNA 1145
+FIPV IWYQ+YYI AREL+RL + +AP++ HF+E+++GA TI +F QE RF +
Sbjct: 1093 VFIPVVAASIWYQRYYIAAARELSRLVGVCKAPLIQHFSETISGATTIRSFSQEFRFRSD 1152
Query: 1146 NLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTY 1205
N+ L D +SRP F+ AMEWLCFRL++LS+ F FSLV LV++P G+I+PS+AGLAVTY
Sbjct: 1153 NMRLSDGYSRPKFYTAGAMEWLCFRLDMLSSLTFVFSLVFLVSIPTGVIDPSLAGLAVTY 1212
Query: 1206 GINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFH 1265
G++LN LQA +IW +CN ENK+ISVERILQY+++PSE PLV E RP +WP G +
Sbjct: 1213 GLSLNTLQAWLIWTLCNLENKIISVERILQYASVPSEPPLVIESNRPEQSWPSRGEVEIR 1272
Query: 1266 NLQIRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSIIIDNV 1325
+LQ+RYA H+P VL+ I+CTF LIQ +FRIVEP+ G I ID V
Sbjct: 1273 DLQVRYAPHMPLVLRGITCTFKGGLRTGIVGRTGSGKSTLIQTLFRIVEPSAGEIRIDGV 1332
Query: 1326 DITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKE 1385
+I IGLHDLR RL IIPQDPT+F+GT+R NLDPL +Y+D Q+WEALDKCQLGD VR KE
Sbjct: 1333 NILTIGLHDLRLRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQIWEALDKCQLGDEVRKKE 1392
Query: 1386 EKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF 1445
+KLDS+V+ENG+NWS+GQRQL CLGR LLK+S ILVLDEATASVD+ATD +IQK + + F
Sbjct: 1393 QKLDSSVSENGDNWSMGQRQLVCLGRVLLKRSKILVLDEATASVDTATDNLIQKTLREHF 1452
Query: 1446 KDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMRSQN 1504
D TV+TIAHRI +VIDSD+VL+LS+G I EYD+P +LLE + S FS+L+ EY+ RS +
Sbjct: 1453 SDCTVITIAHRISSVIDSDMVLLLSNGIIEEYDTPVRLLEDKSSSFSKLVAEYTSRSSS 1511
|
|
| TAIR|locus:2020235 ABCC5 "ATP-binding cassette C5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3549 (1254.4 bits), Expect = 0., P = 0.
Identities = 725/1450 (50%), Positives = 982/1450 (67%)
Query: 73 VKLGICYKASMVSSTLIFGTHFIILLTVMLNTGGEAEAVCNSGILAFSSRIMQVVSWAST 132
V +G + S++ + G ++L+ + E V + +L F + Q ++W
Sbjct: 72 VSVGFGFNLSLLCCLYVLGVQVLVLVYDGVKVRRE---VSDWFVLCFPAS--QSLAWFVL 126
Query: 133 LFLLCKIIPNSAHVKFPWILRAWWFCSFLFSILCTALHTYLRIRYRGQFRIQDYVDIIAL 192
FL+ + S+ K P+++R WWF +F LCT R+ G R +V +A
Sbjct: 127 SFLVLHLKYKSSE-KLPFLVRIWWFLAFSIC-LCTMYVDGRRLAIEGWSRCSSHV--VAN 182
Query: 193 LAST----FLFGISIQGKTGLLLHTASSDTTEPFLNVKADKQFKSKRDSPYGKSTLLQLV 248
LA T FL ++ +G +G+ + +SSD EP L +++ + +PY + L+ L+
Sbjct: 183 LAVTPALGFLCFLAWRGVSGIQVTRSSSDLQEPLL---VEEEAACLKVTPYSTAGLVSLI 239
Query: 249 TFSWLNPLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLDLVKEKEGSTNPSIYKAI 308
T SWL+PL + G K+PLEL DIP + +D A+ + + K + S PS+ +AI
Sbjct: 240 TLSWLDPLLSAGSKRPLELKDIPLLAPRDRAKSSYKVLKSNWKRCKSENPSKPPSLARAI 299
Query: 309 FFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMV 368
K+AA NA FA +N SYVGPYLI+ FV++L K+ E GY+LA F +K++
Sbjct: 300 MKSFWKEAACNAVFAGLNTLVSYVGPYLISYFVDYLGGKEIFPHE-GYVLAGIFFTSKLI 358
Query: 369 ETIAQRQWIFXXXXXXXXXXXXXISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISD 428
ET+ RQW + +YRKGL LSS ++Q+HTSGEI+NYM+VDVQRI D
Sbjct: 359 ETVTTRQWYMGVDILGMHVRSALTAMVYRKGLKLSSIAKQNHTSGEIVNYMAVDVQRIGD 418
Query: 429 FIFYSNYMFMLPVQISLAIYILRTNXXXXXXXXXXXXXXVMTCNIPITRIQKRFQSKIMD 488
+ +Y + ++MLP+QI LA+ IL + + IP+ ++Q+ +Q K+M
Sbjct: 419 YSWYLHDIWMLPMQIVLALAILYKSVGIAAVATLVATIISILVTIPLAKVQEDYQDKLMT 478
Query: 489 AKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWGS 548
AKD RMR TSE L+NM+ LKLQAW+ R+ +LE +R+ E WL K+L A FIFW S
Sbjct: 479 AKDERMRKTSECLRNMRVLKLQAWEDRYRVRLEEMREEEYGWLRKALYSQAFVTFIFWSS 538
Query: 549 PTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAA 608
P F++ VTF + LG QLTAG VLSALATFR+LQ+P+ N PDL+S +AQ KVS DRI+
Sbjct: 539 PIFVAAVTFATSIFLGTQLTAGGVLSALATFRILQEPLRNFPDLVSMMAQTKVSLDRISG 598
Query: 609 YLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGT 668
+LQE+E+Q DA +P+G S +E+ +G F W+P SS PTL GIQ+KV++GM+VA+CGT
Sbjct: 599 FLQEEELQEDATVVIPRGLSNIAIEIKDGVFCWDPFSSRPTLSGIQMKVEKGMRVAVCGT 658
Query: 669 VGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDR 728
VGSGKSS +SCILGEI K++G V+I GT YV QS WI +GNI ENILFG+ + KY
Sbjct: 659 VGSGKSSFISCILGEIPKISGEVRICGTTGYVSQSAWIQSGNIEENILFGSPMEKTKYKN 718
Query: 729 TVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVD 788
++AC+L KD ELF+ GD T IGERGIN+SGGQKQR+Q+ARA+YQDADIYLLDDPFSA+D
Sbjct: 719 VIQACSLKKDIELFSHGDQTIIGERGINLSGGQKQRVQLARALYQDADIYLLDDPFSALD 778
Query: 789 AHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIG 848
AHTG+ LF+D ++ L +K+V++VTHQVEFLPAAD+ILV++ GRI Q+G++++LL+
Sbjct: 779 AHTGSDLFRDYILSALAEKTVVFVTHQVEFLPAADLILVLKEGRIIQSGKYDDLLQAGTD 838
Query: 849 FEVLVGAHSQALESVLTVETSSRTS-QDP--------TPESEL-NSDSTSNVKLVHSQHD 898
F+ LV AH +A+E++ SS S ++P P+S++ +D + K V
Sbjct: 839 FKALVSAHHEAIEAMDIPSPSSEDSDENPIRDSLVLHNPKSDVFENDIETLAKEVQEGGS 898
Query: 899 SEHELSLEITEKGGK------LVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSS 952
+ +++ +K K LVQEEER KG + +VY SY+ A GAL+P+I+LAQ++
Sbjct: 899 ASDLKAIKEKKKKAKRSRKKQLVQEEERVKGKVSMKVYLSYMGAAYKGALIPLIILAQAA 958
Query: 953 FQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRT 1012
FQ LQ+ASN+WMAWA+P T E + ++L+VYT L GSS+ + +RA LVA GL
Sbjct: 959 FQFLQIASNWWMAWANPQTEGDESKVDPTLLLIVYTALAFGSSVFIFVRAALVATFGLAA 1018
Query: 1013 AQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGT 1072
AQKLF NML SV RAPM+FFDSTP GRILNR S DQSV+DL++ RLG A + IQ+ G
Sbjct: 1019 AQKLFLNMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLCGI 1078
Query: 1073 IGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAAT 1132
+ VM+ V WQVF++ +PV C W Q+YY+ ++REL R+ IQ++PI+H F ES+AGAAT
Sbjct: 1079 VAVMTNVTWQVFLLVVPVAVACFWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAAT 1138
Query: 1133 IHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEG 1192
I F QE RF NL L+D RP+F +++A+EWLC R+ LLS VFAF +V+LV+ P G
Sbjct: 1139 IRGFGQEKRFIKRNLYLLDCFVRPFFCSIAAIEWLCLRMELLSTLVFAFCMVLLVSFPHG 1198
Query: 1193 IINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRP 1252
I+PS+AGLAVTYG+NLN + I + C ENK+IS+ERI QYS + EAP + E+ RP
Sbjct: 1199 TIDPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIYQYSQIVGEAPAIIEDFRP 1258
Query: 1253 PSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRI 1312
PS+WP GTI ++++RYAE+LP+VL +SC FP LIQA+FR+
Sbjct: 1259 PSSWPATGTIELVDVKVRYAENLPTVLHGVSCVFPGGKKIGIVGRTGSGKSTLIQALFRL 1318
Query: 1313 VEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEAL 1372
+EPT G I IDN+DI++IGLHDLRSRLGIIPQDPTLF+GT+R NLDPL ++SD ++WEAL
Sbjct: 1319 IEPTAGKITIDNIDISQIGLHDLRSRLGIIPQDPTLFEGTIRANLDPLEEHSDDKIWEAL 1378
Query: 1373 DKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSA 1432
DK QLGD+VR K+ KLDS V ENG+NWSVGQRQL LGR LLK++ ILVLDEATASVD+A
Sbjct: 1379 DKSQLGDVVRGKDLKLDSPVLENGDNWSVGQRQLVSLGRALLKQAKILVLDEATASVDTA 1438
Query: 1433 TDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFS 1492
TD +IQKII EF+D TV TIAHRI TVIDSDLVLVLSDGR+AE+D+P +LLE + S F
Sbjct: 1439 TDNLIQKIIRTEFEDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPARLLEDKSSMFL 1498
Query: 1493 QLIKEYSMRS 1502
+L+ EYS RS
Sbjct: 1499 KLVTEYSSRS 1508
|
|
| TAIR|locus:2090049 ABCC7 "ATP-binding cassette C7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3406 (1204.0 bits), Expect = 0., P = 0.
Identities = 690/1402 (49%), Positives = 926/1402 (66%)
Query: 114 SGILAFSSRIMQVVSWASTLFLLCKIIPNSAHVKFPWILRAWWFCSFLFSILCTALHTYL 173
S ++ + +SW + F + S KFP +LR WW F+FS C L +
Sbjct: 100 SELMILLDLLFTALSWGAISFYIRSQFTYSHDQKFPILLRVWWVLYFMFS--CYRLLVDI 157
Query: 174 RIRYRGQFRIQDYV---DIIALLASTFL-FG-ISIQG---KTGLLLHTASSDTTEPFL-- 223
+ Y+ Q + ++ D++A+ FL + + QG + LLL + E
Sbjct: 158 AL-YKKQELVSVHLLLSDVLAVSVGLFLCYSCLQKQGQGERINLLLEEPLLNGAESSAAT 216
Query: 224 NVKADKQFKSKRDSPYGKSTLLQLVTFSWLNPLFAVGIKKPLELDDIPDVDIKDSAEFLS 283
+V+ DK + +P+ + L V+FSW++PL +G +K ++ +D+P VD D AE L
Sbjct: 217 SVQLDKAEDDEVVTPFSNAGFLSHVSFSWMSPLIVLGNEKIIDSEDVPQVDNSDRAEKLF 276
Query: 284 NRFEQDLDLVKEKEGSTNPSIYKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNF 343
F L+ + T + KA+FF + + ++ FA + + YV PYL++ FV +
Sbjct: 277 WIFRSKLEWDDGERRITTYKLIKALFFSVWRDILLSTLFAFVYTVSCYVAPYLMDTFVQY 336
Query: 344 LTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFXXXXXXXXXXXXXISHLYRKGLHLS 403
L ++ S G +L F AK+VE A+R W F +S +Y KGL L
Sbjct: 337 LNGQRQYS-NQGVVLVTTFFVAKLVECQARRNWYFRLQKAGIGMRSVLVSMIYEKGLTLP 395
Query: 404 SQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMFMLPVQISLAIYILRTNXXXXXXXXXX 463
S+Q HTSGEIIN M+VD +RIS F +Y + ++L +QISLA+ IL +
Sbjct: 396 CYSKQGHTSGEIINLMTVDAERISAFSWYMHDPWILVLQISLALLILYRSLGLGSIAAFA 455
Query: 464 XXXXVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESL 523
VM NIP+ +++++FQ +M++KDNRM+ TSE L NM+ LKLQ W+ +FL K+ L
Sbjct: 456 ATFLVMLGNIPLAKLEEKFQGNLMESKDNRMKKTSEALLNMRILKLQGWEMKFLHKILDL 515
Query: 524 RQVECIWLWKSLRLSATSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQ 583
R +E WL K + SA + + W +P+F+S FGACMLL I L +G++++ALATFR+LQ
Sbjct: 516 RGIEAGWLKKFVYNSAAISSVLWAAPSFVSATAFGACMLLKIPLESGKIIAALATFRILQ 575
Query: 584 DPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNP 643
PI+ LPD +S I Q KVS DRIA +L D++Q+D +E +P G S+ +VEV NG FSW+
Sbjct: 576 TPIYKLPDTISMIVQTKVSLDRIATFLCLDDLQQDGMERLPSGSSKMDVEVSNGAFSWDD 635
Query: 644 ESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQS 703
S PTL I+ K+ GM +AICGTVGSGKSSLLS ILGE+ K++G +K+ G KAY+ QS
Sbjct: 636 SSPIPTLKDIRFKIPHGMNIAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQS 695
Query: 704 PWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQ 763
PWI +G + ENILFG Y R +EAC+L KD E+F D T IGERGIN+SGGQKQ
Sbjct: 696 PWIQSGKVEENILFGKPMQREWYQRVLEACSLNKDLEVFPFRDQTVIGERGINLSGGQKQ 755
Query: 764 RIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAAD 823
RIQIARA+YQDADIYL DDPFSAVDAHTG+ LFK+ L+G+L++K+V+YVTHQ+EFLP AD
Sbjct: 756 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRNKTVIYVTHQLEFLPEAD 815
Query: 824 IILVMENGRIAQAGRFEELLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPTP-ESEL 882
+ILVM++GRI QAG++ E+L+ F LVGAH+ AL +V + E S ++Q T ES++
Sbjct: 816 LILVMKDGRITQAGKYNEILESGTDFMELVGAHTDALAAVDSYEKGSASAQSTTSKESKV 875
Query: 883 NSDSTSNVKLVHSQHDSEHELSLEITEKGGKLVQEEEREKGSIGKEVYWSYLTAVKGGAL 942
++D + + E ++ G+LVQEEEREKG +G VY Y+ GGAL
Sbjct: 876 SNDE-----------EKQEE---DLPSPKGQLVQEEEREKGKVGFTVYQKYMKLAYGGAL 921
Query: 943 VPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRA 1002
VPIIL+ Q FQVL + SNYWMAW +P + D +P + + ++LVY L SS C+L+RA
Sbjct: 922 VPIILVVQILFQVLNIGSNYWMAWVTPVSKDVKPLVSGSTLILVYVFLATASSFCILVRA 981
Query: 1003 MLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWC 1062
ML A+TG + A +LF M + RA M+FFD+TP GRILNRAS DQS +DL L +
Sbjct: 982 MLSAMTGFKIATELFNQMHFRIFRASMSFFDATPIGRILNRASTDQSAVDLRLPSQFSNL 1041
Query: 1063 AFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHH 1122
A + + ILG IGVM QVAWQV ++FIPV C WY+QYYI ARELARL+ I R+P++ H
Sbjct: 1042 AIAAVNILGIIGVMGQVAWQVLIVFIPVIAACTWYRQYYISAARELARLSGISRSPLVQH 1101
Query: 1123 FAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFS 1182
F+E+L+G TI +FDQE RF + L D +SR FH +SAMEWLCFRL+LLS FA S
Sbjct: 1102 FSETLSGITTIRSFDQEPRFRTDIMRLNDCYSRLRFHAISAMEWLCFRLDLLSTVAFALS 1161
Query: 1183 LVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSE 1242
LV+LV++PEG+INPS AGLAVTY +NLN LQA++IW +C+ ENKMISVER+LQY ++PSE
Sbjct: 1162 LVILVSVPEGVINPSFAGLAVTYALNLNSLQATLIWTLCDLENKMISVERMLQYIDIPSE 1221
Query: 1243 APLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXX 1302
LV E RP +WP G I+ NLQ+RY HLP VL+ ++CTF
Sbjct: 1222 PSLVIESTRPEKSWPCRGEITICNLQVRYGPHLPMVLRGLTCTFRGGLKTGIVGRTGCGK 1281
Query: 1303 XXLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQ 1362
LIQ +FRIVEP G I ID ++I IGLHDLRSRL IIPQ+PT+F+GTVR NLDPL +
Sbjct: 1282 STLIQTLFRIVEPAAGEIRIDGINILTIGLHDLRSRLSIIPQEPTMFEGTVRSNLDPLEE 1341
Query: 1363 YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVL 1422
Y+D Q+WEALDKCQLGD +R KE KLDS V+ENG+NWSVGQRQL CLGR LLK+S +L+L
Sbjct: 1342 YADDQIWEALDKCQLGDEIRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKVLIL 1401
Query: 1423 DEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTK 1482
DEATASVD+ATD +IQ+ + Q F TV+TIAHRI +VIDSD+VL+L G I E+DSP +
Sbjct: 1402 DEATASVDTATDTLIQETLRQHFSGCTVITIAHRISSVIDSDMVLLLDQGLIEEHDSPAR 1461
Query: 1483 LLEREDSFFSQLIKEYSMRSQN 1504
LLE + S FS+L+ EY+ S +
Sbjct: 1462 LLEDKSSSFSKLVAEYTASSDS 1483
|
|
| TAIR|locus:2090039 ABCC6 "ATP-binding cassette C6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3387 (1197.3 bits), Expect = 0., P = 0.
Identities = 664/1285 (51%), Positives = 879/1285 (68%)
Query: 220 EPFLNVKADKQFKSKRDSPYGKSTLLQLVTFSWLNPLFAVGIKKPLELDDIPDVDIKDSA 279
EP L+ A+ + +P+ K+ +L ++FSW++PL +G +K +++ D+P +D D+
Sbjct: 191 EPLLS-SAESSDNEEVTAPFSKAGILSRMSFSWMSPLITLGNEKIIDIKDVPQLDRSDTT 249
Query: 280 EFLSNRFEQDLDLVKEKEGSTNPSIYKAIFFFIRKKAAINASFAVINAATSYVGPYLIND 339
E L F L+ + T + KA+F + + ++A A + + YV PYL+++
Sbjct: 250 ESLFWIFRSKLEWDDGERRITTFKLIKALFLSVWRDIVLSALLAFVYTVSCYVAPYLMDN 309
Query: 340 FVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFXXXXXXXXXXXXXISHLYRKG 399
FV +L + GY+L F AK+VE QRQW F +S +Y KG
Sbjct: 310 FVQYLNGNRQYK-NQGYVLVTTFFVAKLVECQTQRQWFFRGQKAGLGMRSVLVSMIYEKG 368
Query: 400 LHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMFMLPVQISLAIYILRTNXXXXXX 459
L L S+Q HTSGEIIN M+VD RIS F ++ + ++L +Q+SLA++IL +
Sbjct: 369 LTLPCHSKQGHTSGEIINLMAVDADRISAFSWFMHDPWILVLQVSLALWILYKSLGLGSI 428
Query: 460 XXXXXXXXVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQK 519
VM N P +++++FQS +M +KDNRM+ TSEVL NMK LKLQ W+ +FL K
Sbjct: 429 AAFPATILVMLANYPFAKLEEKFQSSLMKSKDNRMKKTSEVLLNMKILKLQGWEMKFLSK 488
Query: 520 LESLRQVECIWLWKSLRLSATSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATF 579
+ LR +E WL K + S+ + W +P+FIS FGAC+LL I L +G++L+ALATF
Sbjct: 489 ILELRHIEAGWLKKFVYNSSAINSVLWAAPSFISATAFGACLLLKIPLESGKILAALATF 548
Query: 580 RMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKF 639
R+LQ PI+ LP+ +S I Q KVS +RIA++L D++Q+D V +P G SE VE+ NG F
Sbjct: 549 RILQGPIYKLPETISMIVQTKVSLNRIASFLCLDDLQQDVVGRLPSGSSEMAVEISNGTF 608
Query: 640 SWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAY 699
SW+ S PTL + KV +GM VAICGTVGSGKSSLLS ILGE+ K++G +K+ G KAY
Sbjct: 609 SWDDSSPIPTLRDMNFKVSQGMNVAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAY 668
Query: 700 VPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSG 759
+ QSPWI +G + ENILFG + YDR +EAC+L KD E+ D T IGERGIN+SG
Sbjct: 669 IAQSPWIQSGKVEENILFGKPMEREWYDRVLEACSLNKDLEILPFHDQTVIGERGINLSG 728
Query: 760 GQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFL 819
GQKQRIQIARA+YQDADIYL DDPFSAVDAHTG+ LFK+ L+G+L+ K+V+YVTHQVEFL
Sbjct: 729 GQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRHKTVIYVTHQVEFL 788
Query: 820 PAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPE 879
P AD+ILVM++G+I QAG++ E+L F LVGAH++AL ++ + ET S+ T +
Sbjct: 789 PEADLILVMKDGKITQAGKYHEILDSGTDFMELVGAHTEALATIDSCETGY-ASEKSTTD 847
Query: 880 SELNSDSTSNVKLVHSQHDSEHELSLEITEKGGKLVQEEEREKGSIGKEVYWSYLTAVKG 939
E N +++H H + E + + G+LVQEEEREKG +G VY Y+ G
Sbjct: 848 KE-------N-EVLH--HKEKQENGSD-NKPSGQLVQEEEREKGKVGFTVYKKYMALAYG 896
Query: 940 GALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVL 999
GA++P+IL+ Q FQ+L + SNYWM W +P + D EP + ++LVY LL V SS C+L
Sbjct: 897 GAVIPLILVVQVLFQLLSIGSNYWMTWVTPVSKDVEPPVSGFTLILVYVLLAVASSFCIL 956
Query: 1000 LRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRL 1059
+RA+LVA+TG + A +LFT M + RA M+FFD+TP GRILNRAS DQSV DL L G+
Sbjct: 957 IRALLVAMTGFKMATELFTQMHLRIFRASMSFFDATPMGRILNRASTDQSVADLRLPGQF 1016
Query: 1060 GWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPI 1119
+ A + I ILG IGV+ QVAWQV ++FIPV C WY+QYYI ARELARLA I R+P+
Sbjct: 1017 AYVAIAAINILGIIGVIVQVAWQVLIVFIPVVAACAWYRQYYISAARELARLAGISRSPV 1076
Query: 1120 LHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVF 1179
+HHF+E+L+G TI +FDQE RF + L D +SR FH+ AMEWLCFRL LLS F F
Sbjct: 1077 VHHFSETLSGITTIRSFDQEPRFRGDIMRLSDCYSRLKFHSTGAMEWLCFRLELLSTFAF 1136
Query: 1180 AFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNL 1239
A SLV+LV+ PEG+INPS+AGLA+TY +NLN LQA++IW +C+ ENKMISVER+LQY+N+
Sbjct: 1137 ASSLVILVSAPEGVINPSLAGLAITYALNLNTLQATLIWTLCDLENKMISVERMLQYTNI 1196
Query: 1240 PSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPXXXXXXXXXXXX 1299
PSE PLV E RP +WP G I+ NLQ+RY HLP VL ++CTFP
Sbjct: 1197 PSEPPLVIETTRPEKSWPSRGEITICNLQVRYGPHLPMVLHGLTCTFPGGLKTGIVGRTG 1256
Query: 1300 XXXXXLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDP 1359
LIQ +FRIVEP G I ID ++I IGLHDLRSRL IIPQDPT+F+GT+R NLDP
Sbjct: 1257 CGKSTLIQTLFRIVEPAAGEIRIDGINILSIGLHDLRSRLSIIPQDPTMFEGTIRSNLDP 1316
Query: 1360 LVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSI 1419
L +Y+D Q+WEALD CQLGD VR KE KLDS V+ENG+NWSVGQRQL CLGR LLK+S +
Sbjct: 1317 LEEYTDDQIWEALDNCQLGDEVRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKL 1376
Query: 1420 LVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDS 1479
LVLDEATAS+D+ATD +IQ+ + F D TV+TIAHRI +VIDSD+VL+L G I E+DS
Sbjct: 1377 LVLDEATASIDTATDNLIQETLRHHFADCTVITIAHRISSVIDSDMVLLLDQGLIKEHDS 1436
Query: 1480 PTKLLEREDSFFSQLIKEYSMRSQN 1504
P +LLE S FS+L+ EY+ S++
Sbjct: 1437 PARLLEDRSSLFSKLVAEYTTSSES 1461
|
|
| TAIR|locus:2081755 ABCC14 "ATP-binding cassette C14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1384 (492.3 bits), Expect = 2.4e-278, Sum P(2) = 2.4e-278
Identities = 280/633 (44%), Positives = 406/633 (64%)
Query: 871 RTSQDPTPESELNSDSTSNVKLVHSQHDS-EHELSLEITEKGGKLVQEEEREKGSIGKEV 929
RT+ +P L + S + +L +S + L I E G +L++EEERE G + +V
Sbjct: 908 RTTSMESPRV-LRTTSMESPRLSELNDESIKSFLGSNIPEDGSRLIKEEEREVGQVSFQV 966
Query: 930 YWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTL 989
Y Y T G + +++ ++Q +AS+YW+A+ + ++ E + + + VY +
Sbjct: 967 YKLYSTEAYGWWGMILVVFFSVAWQASLMASDYWLAYET--SAKNEVSFDATVFIRVYVI 1024
Query: 990 LTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQS 1049
+ S + V LRA V GL+TAQ F +L+S+ APM+FFD+TP+GRIL+RAS DQ+
Sbjct: 1025 IAAVSIVLVCLRAFYVTHLGLKTAQIFFKQILNSLVHAPMSFFDTTPSGRILSRASTDQT 1084
Query: 1050 VLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELA 1109
+D+ + +G A +L V Q AW IP+ + IWY+ YY+ ++REL
Sbjct: 1085 NVDIFIPFMIGLVATMYTTLLSIFIVTCQYAWPTVFFIIPLGWLNIWYRGYYLASSRELT 1144
Query: 1110 RLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCF 1169
RL I +AP++HHF+ES+AG TI AF ++ F N+ ++ + R FHN + EWL F
Sbjct: 1145 RLDSITKAPVIHHFSESIAGVMTIRAFKKQPMFRQENVKRVNANLRMDFHNNGSNEWLGF 1204
Query: 1170 RLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMIS 1229
RL L+ ++V S + +V LP II P GL+++YG++LN + I+ C ENKM+S
Sbjct: 1205 RLELIGSWVLCISALFMVMLPSNIIKPENVGLSLSYGLSLNGVLFWAIYLSCFIENKMVS 1264
Query: 1230 VERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPXX 1289
VERI Q++++P+EA +E RPP NWP G I ++++RY + P VLK ++
Sbjct: 1265 VERIKQFTDIPAEAKWEIKESRPPPNWPYKGNIRLEDVKVRYRPNTPLVLKGLTIDIKGG 1324
Query: 1290 XXXXXXXXXXXXXXXLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLF 1349
LIQ +FR+VEP+ G IIID +DI +GLHDLRSR GIIPQ+P LF
Sbjct: 1325 EKIGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGIDICTLGLHDLRSRFGIIPQEPVLF 1384
Query: 1350 DGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCL 1409
+GTVR N+DP +YSD+++W++L++CQL D+V +K EKLDS VA+NGENWSVGQRQL CL
Sbjct: 1385 EGTVRSNIDPTEKYSDEEIWKSLERCQLKDVVASKPEKLDSLVADNGENWSVGQRQLLCL 1444
Query: 1410 GRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVL 1469
GR +LK+S IL LDEATASVDS TD +IQKII ++F D T+++IAHRI TV+D D VLV+
Sbjct: 1445 GRVMLKRSRILFLDEATASVDSQTDAMIQKIIREDFSDCTIISIAHRIPTVMDCDRVLVI 1504
Query: 1470 SDGRIAEYDSPTKLLEREDSFFSQLIKEYSMRS 1502
G+ EYDSP +LLER+ S F+ L++EY++RS
Sbjct: 1505 DAGKAKEYDSPVRLLERQ-SLFAALVQEYALRS 1536
|
|
| TAIR|locus:2043268 ABCC4 "ATP-binding cassette C4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2646 (936.5 bits), Expect = 3.0e-275, P = 3.0e-275
Identities = 552/1367 (40%), Positives = 822/1367 (60%)
Query: 144 AHVKFPWILRAWWFCSFLFSIL--CTALHTYLRIRYRGQFRIQDYVDIIALLASTFLFGI 201
A + P LR +W SF+ + L T + +L R +D + + FL
Sbjct: 160 AALNHPLSLRIYWISSFVLTSLFAVTGIFHFLSDAATS-LRAEDVASFFSFPLTAFLLIA 218
Query: 202 SIQGKTGLLLHTASSDT-TEPFLNVKADKQFKSKRDSPYGKSTLLQLVTFSWLNPLFAVG 260
S++G TGL+ TA +++ T+P V +K S S Y +++ + W+NPL + G
Sbjct: 219 SVRGITGLV--TAETNSPTKPSDAVSVEK---SDNVSLYASASVFSKTFWLWMNPLLSKG 273
Query: 261 IKKPLELDDIPDVDIKDSAEFLSNRFEQDLDLVKEKEGSTNPSIYKAIFFFIRKKAAINA 320
K PL L+ +P + + AE L+ FE K E S++P I + K+ A
Sbjct: 274 YKSPLTLEQVPTLSPEHKAERLALLFESSWP--KPSENSSHP-IRTTLLRCFWKEILFTA 330
Query: 321 SFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFXX 380
A++ YVGP LI FV+F + K+S + GY L L L AK VE + Q+ F
Sbjct: 331 ILAIVRLGVMYVGPVLIQSFVDFTSGKRSSPWQ-GYYLVLILLVAKFVEVLTTHQFNFDS 389
Query: 381 XXXXXXXXXXXISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMFMLP 440
I+ LY+KGL L+ +RQ+H G+I+NYM+VD Q++SD + + ++++P
Sbjct: 390 QKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMP 449
Query: 441 VQISLAIYILRTNXXXXXXXXXXXXXXVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEV 500
+Q+++A+ +L + V + T+ +Q +M +D+RM+AT+E+
Sbjct: 450 LQVTVALVLLYGSLGASVITAVIGLTGVFVFILLGTQRNNGYQFSLMGNRDSRMKATNEM 509
Query: 501 LKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWGSPTFISVVTFGAC 560
L M+ +K QAW+ F +++ R +E WL K L A + + W +P IS +TF
Sbjct: 510 LNYMRVIKFQAWENHFNKRILKFRDMEFGWLSKFLYSIAGNIIVLWSTPVLISALTFATA 569
Query: 561 MLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAV 620
+ LG++L AG V + F++LQ+PI P + +++Q +S R+ +Y+ E+ DAV
Sbjct: 570 LALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDSYMMSKELSEDAV 629
Query: 621 EYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCI 680
E VEV +G FSW+ E + P L I KVK+G AI GTVGSGKSSLL+ +
Sbjct: 630 ERALGCDGNTAVEVRDGSFSWDDEDNEPALSDINFKVKKGELTAIVGTVGSGKSSLLASV 689
Query: 681 LGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFE 740
LGE+ +++G V++ G+ YV Q+ WI G +++NILFG KY++ + C+L KD +
Sbjct: 690 LGEMHRISGQVRVCGSTGYVAQTSWIENGTVQDNILFGLPMVREKYNKVLNVCSLEKDLQ 749
Query: 741 LFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCL 800
+ GD TEIGERGIN+SGGQKQRIQ+ARAVYQ+ D+YLLDD FSAVDAHTG+ +FK C+
Sbjct: 750 MMEFGDKTEIGERGINLSGGQKQRIQLARAVYQECDVYLLDDVFSAVDAHTGSDIFKKCV 809
Query: 801 MGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGAHSQAL 860
G LK K+VL VTHQV+FL D ILVM +G+I ++G+++EL+ + F LV AH ++
Sbjct: 810 RGALKGKTVLLVTHQVDFLHNVDCILVMRDGKIVESGKYDELVSSGLDFGELVAAHETSM 869
Query: 861 ESVLTVETSSRTSQDP-TPESELNSDSTSNVKLVH-SQHDSEHELSL---EITEKGGKLV 915
E V S+ + P TP S S ++++ H S + EH S I E G KL+
Sbjct: 870 ELVEAGADSAAVATSPRTPTSPHASSPRTSMESPHLSDLNDEHIKSFLGSHIVEDGSKLI 929
Query: 916 QEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGE 975
+EEERE G + VY Y T G + ++L ++Q +AS+YW+A+ + ++
Sbjct: 930 KEEERETGQVSLGVYKQYCTEAYGWWGIVLVLFFSLTWQGSLMASDYWLAYET--SAKNA 987
Query: 976 PALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDST 1035
+ ++ +L Y ++ + S + V +R+ V GL+TAQ F +L+S+ APM+FFD+T
Sbjct: 988 ISFDASVFILGYVIIALVSIVLVSIRSYYVTHLGLKTAQIFFRQILNSILHAPMSFFDTT 1047
Query: 1036 PTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICI 1095
P+GRIL+RAS DQ+ +D+ + LG +L V Q AW IP+ + I
Sbjct: 1048 PSGRILSRASTDQTNVDILIPFMLGLVVSMYTTLLSIFIVTCQYAWPTAFFVIPLGWLNI 1107
Query: 1096 WYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSR 1155
WY+ YY+ ++REL R+ I +API+HHF+ES+AG TI +F +++ F N+ ++++ R
Sbjct: 1108 WYRNYYLASSRELTRMDSITKAPIIHHFSESIAGVMTIRSFRKQELFRQENVKRVNDNLR 1167
Query: 1156 PWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQAS 1215
FHN + EWL FRL L+ ++V S + +V LP +I P GL+++YG++LN +
Sbjct: 1168 MDFHNNGSNEWLGFRLELVGSWVLCISALFMVLLPSNVIRPENVGLSLSYGLSLNSVLFF 1227
Query: 1216 IIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHL 1275
I+ C ENKM+SVERI Q++++PSE+ +E PPSNWP G + +L++RY +
Sbjct: 1228 AIYMSCFVENKMVSVERIKQFTDIPSESEWERKETLPPSNWPFHGNVHLEDLKVRYRPNT 1287
Query: 1276 PSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL 1335
P VLK I+ LIQ +FR+VEP+ G IIID +DI+ +GLHDL
Sbjct: 1288 PLVLKGITLDIKGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGIDISTLGLHDL 1347
Query: 1336 RSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAEN 1395
RSR GIIPQ+P LF+GTVR N+DP QYSD+++W++L++CQL D+V K EKLDS V +N
Sbjct: 1348 RSRFGIIPQEPVLFEGTVRSNIDPTEQYSDEEIWKSLERCQLKDVVATKPEKLDSLVVDN 1407
Query: 1396 GENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAH 1455
GENWSVGQRQL CLGR +LK+S +L LDEATASVDS TD VIQKII ++F T+++IAH
Sbjct: 1408 GENWSVGQRQLLCLGRVMLKRSRLLFLDEATASVDSQTDAVIQKIIREDFASCTIISIAH 1467
Query: 1456 RIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMRS 1502
RI TV+D D VLV+ G+ E+DSP +LLER S F+ L++EY++RS
Sbjct: 1468 RIPTVMDGDRVLVIDAGKAKEFDSPARLLERP-SLFAALVQEYALRS 1513
|
|
| TAIR|locus:2077750 ABCC10 "ATP-binding cassette C10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1400 (497.9 bits), Expect = 6.8e-272, Sum P(2) = 6.8e-272
Identities = 282/602 (46%), Positives = 396/602 (65%)
Query: 910 KGGKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASP 969
K +L+++EEREKG G Y Y+ KG I LAQ +F V Q+ N WMA
Sbjct: 860 KPSRLIKQEEREKGDTGLRPYIQYMNQNKGYIFFFIASLAQVTFAVGQILQNSWMA---- 915
Query: 970 PTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPM 1029
+ P + ++LVY L+ + S LC+++R++ V I ++++ LF+ +L+S+ RAPM
Sbjct: 916 -ANVDNPQVSTLKLILVYLLIGLCSVLCLMVRSVCVVIMCMKSSASLFSQLLNSLFRAPM 974
Query: 1030 AFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIP 1089
+F+DSTP GRIL+R S+D S++DL++ L + S + ++GV++ V WQV + +P
Sbjct: 975 SFYDSTPLGRILSRVSSDLSIVDLDVPFGLIFVVASSVNTGCSLGVLAIVTWQVLFVSVP 1034
Query: 1090 VTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSL 1149
+ + Q+YY TA+EL R+ R+ + +H AES+AGA TI AFD+E+RF +L+L
Sbjct: 1035 MVYLAFRLQKYYFQTAKELMRINGTTRSYVANHLAESVAGAITIRAFDEEERFFKKSLTL 1094
Query: 1150 IDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINL 1209
ID ++ P+FH+ +A EWL RL +S V A + ++ LP G + G+A++YG++L
Sbjct: 1095 IDTNASPFFHSFAANEWLIQRLETVSAIVLASTAFCMILLPTGTFSSGFIGMALSYGLSL 1154
Query: 1210 NVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQI 1269
N+ + N C N +ISVER+ QY++L EAP V EE RPP NWP G + +LQI
Sbjct: 1155 NMGLVYSVQNQCYLANWIISVERLNQYTHLTPEAPEVIEETRPPVNWPVTGRVEISDLQI 1214
Query: 1270 RYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSIIIDNVDITK 1329
RY P VLK ISCTF LI A+FR+VEP G I++D VDI+K
Sbjct: 1215 RYRRESPLVLKGISCTFEGGHKIGIVGRTGSGKTTLISALFRLVEPVGGKIVVDGVDISK 1274
Query: 1330 IGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLD 1389
IG+HDLRSR GIIPQDPTLF+GTVR NLDPL Q+SD ++WE L KCQL ++V+ KE LD
Sbjct: 1275 IGVHDLRSRFGIIPQDPTLFNGTVRFNLDPLCQHSDAEIWEVLGKCQLKEVVQEKENGLD 1334
Query: 1390 STVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRT 1449
S V E+G NWS+GQRQLFCLGR +L++S +LVLDEATAS+D+ATD ++QK I +EF D T
Sbjct: 1335 SLVVEDGSNWSMGQRQLFCLGRAVLRRSRVLVLDEATASIDNATDLILQKTIRREFADCT 1394
Query: 1450 VVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMRSQNFNSVA 1509
V+T+AHRI TV+D +VL +SDGRI EYD P KL++ E+S F +L+KEY ++NS
Sbjct: 1395 VITVAHRIPTVMDCTMVLSISDGRIVEYDEPMKLMKDENSLFGKLVKEYW---SHYNSAD 1451
Query: 1510 GR 1511
R
Sbjct: 1452 SR 1453
|
|
| UNIPROTKB|I3L4X2 ABCC1 "Multidrug resistance-associated protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1036 (369.7 bits), Expect = 4.1e-207, Sum P(3) = 4.1e-207
Identities = 227/644 (35%), Positives = 365/644 (56%)
Query: 854 GAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELS-LEIT-EKG 911
G ++ +E+ + V T S Q + +L+S S+ + + H+S EL E E+
Sbjct: 799 GKEAKQMENGMLV-TDSAGKQ---LQRQLSSSSSYSGD-ISRHHNSTAELQKAEAKKEET 853
Query: 912 GKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPII-LLAQSSFQVLQVASNYWMA-WASP 969
KL++ ++ + G + VYW Y+ A+ G + + + V +ASNYW++ W
Sbjct: 854 WKLMEADKAQTGQVKLSVYWDYMKAI--GLFISFLSIFLFMCNHVSALASNYWLSLWTDD 911
Query: 970 PTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPM 1029
P +G + L VY L + + V +M V+I G+ ++ L ++LHS+ R+PM
Sbjct: 912 PIVNGTQE-HTKVRLSVYGALGISQGIAVFGYSMAVSIGGILASRCLHVDLLHSILRSPM 970
Query: 1030 AFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIP 1089
+FF+ TP+G ++NR S + +D + + S+ ++G ++ +A + I IP
Sbjct: 971 SFFERTPSGNLVNRFSKELDTVDSMIPEVIKMFMGSLFNVIGAC-IVILLATPIAAIIIP 1029
Query: 1090 VTGICIWY-QQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLS 1148
G+ ++ Q++Y+ ++R+L RL + R+P+ HF E+L G + I AF++++RF + +
Sbjct: 1030 PLGLIYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDL 1089
Query: 1149 LIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGIN 1208
+D + + ++ ++ A WL RL + N + F+ + V + ++ + GL+V+Y +
Sbjct: 1090 KVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV-ISRHSLSAGLVGLSVSYSLQ 1148
Query: 1209 LNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQ 1268
+ ++ E +++VER+ +YS EAP +E PPS+WP VG + F N
Sbjct: 1149 VTTYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSSWPQVGRVEFRNYC 1208
Query: 1269 IRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSIIIDNVDIT 1328
+RY E L VL++I+ T L +FRI E G IIID ++I
Sbjct: 1209 LRYREDLDFVLRHINVTINGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGINIA 1268
Query: 1329 KIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKL 1388
KIGLHDLR ++ IIPQDP LF G++R NLDP QYSD++VW +L+ L D V A +KL
Sbjct: 1269 KIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWTSLELAHLKDFVSALPDKL 1328
Query: 1389 DSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDR 1448
D AE GEN SVGQRQL CL R LL+K+ ILVLDEATA+VD TD +IQ I +F+D
Sbjct: 1329 DHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQSTIRTQFEDC 1388
Query: 1449 TVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFS 1492
TV+TIAHR++T++D V+VL G I EY +P+ LL++ F+S
Sbjct: 1389 TVLTIAHRLNTIMDYTRVIVLDKGEIQEYGAPSDLLQQRGLFYS 1432
|
|
| UNIPROTKB|P33527 ABCC1 "Multidrug resistance-associated protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1036 (369.7 bits), Expect = 6.3e-205, Sum P(3) = 6.3e-205
Identities = 227/644 (35%), Positives = 365/644 (56%)
Query: 854 GAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELS-LEIT-EKG 911
G ++ +E+ + V T S Q + +L+S S+ + + H+S EL E E+
Sbjct: 890 GKEAKQMENGMLV-TDSAGKQ---LQRQLSSSSSYSGD-ISRHHNSTAELQKAEAKKEET 944
Query: 912 GKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPII-LLAQSSFQVLQVASNYWMA-WASP 969
KL++ ++ + G + VYW Y+ A+ G + + + V +ASNYW++ W
Sbjct: 945 WKLMEADKAQTGQVKLSVYWDYMKAI--GLFISFLSIFLFMCNHVSALASNYWLSLWTDD 1002
Query: 970 PTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPM 1029
P +G + L VY L + + V +M V+I G+ ++ L ++LHS+ R+PM
Sbjct: 1003 PIVNGTQE-HTKVRLSVYGALGISQGIAVFGYSMAVSIGGILASRCLHVDLLHSILRSPM 1061
Query: 1030 AFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIP 1089
+FF+ TP+G ++NR S + +D + + S+ ++G ++ +A + I IP
Sbjct: 1062 SFFERTPSGNLVNRFSKELDTVDSMIPEVIKMFMGSLFNVIGAC-IVILLATPIAAIIIP 1120
Query: 1090 VTGICIWY-QQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLS 1148
G+ ++ Q++Y+ ++R+L RL + R+P+ HF E+L G + I AF++++RF + +
Sbjct: 1121 PLGLIYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDL 1180
Query: 1149 LIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGIN 1208
+D + + ++ ++ A WL RL + N + F+ + V + ++ + GL+V+Y +
Sbjct: 1181 KVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV-ISRHSLSAGLVGLSVSYSLQ 1239
Query: 1209 LNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQ 1268
+ ++ E +++VER+ +YS EAP +E PPS+WP VG + F N
Sbjct: 1240 VTTYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSSWPQVGRVEFRNYC 1299
Query: 1269 IRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEPTMGSIIIDNVDIT 1328
+RY E L VL++I+ T L +FRI E G IIID ++I
Sbjct: 1300 LRYREDLDFVLRHINVTINGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGINIA 1359
Query: 1329 KIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKL 1388
KIGLHDLR ++ IIPQDP LF G++R NLDP QYSD++VW +L+ L D V A +KL
Sbjct: 1360 KIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWTSLELAHLKDFVSALPDKL 1419
Query: 1389 DSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDR 1448
D AE GEN SVGQRQL CL R LL+K+ ILVLDEATA+VD TD +IQ I +F+D
Sbjct: 1420 DHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQSTIRTQFEDC 1479
Query: 1449 TVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFS 1492
TV+TIAHR++T++D V+VL G I EY +P+ LL++ F+S
Sbjct: 1480 TVLTIAHRLNTIMDYTRVIVLDKGEIQEYGAPSDLLQQRGLFYS 1523
|
|
| DICTYBASE|DDB_G0284867 abcC8 "ABC transporter C family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1055 (376.4 bits), Expect = 2.8e-203, Sum P(3) = 2.8e-203
Identities = 227/612 (37%), Positives = 355/612 (58%)
Query: 913 KLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMA-WASP-- 969
K++ E +++G + ++Y SY A+ G L I+ Q+L + +N+W++ W +
Sbjct: 981 KIISVETKQEGKVSFKIYLSYFKAI-GVLLATCIIGFYVLTQLLSILANWWISIWTNSYG 1039
Query: 970 --PTSDGEPALGMN------------IVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQK 1015
G ++ ++ L +Y + G+ LR+ + ++ ++
Sbjct: 1040 GNGNGSGSGSISLSSSSTVEDNEKAKYYLSIYVAFSCGTIAATFLRSFSMVFGSIKGSKL 1099
Query: 1016 LFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGV 1075
M +V +PM+FFD+TP GRILNR S DQ +D +A LG + Q++G+I V
Sbjct: 1100 FHEKMFKAVILSPMSFFDTTPIGRILNRFSKDQLTIDESIARTLGMFLNTFCQVVGSIIV 1159
Query: 1076 MSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHA 1135
++ V+ + + +PV + + Q+YY+ ++REL RL + R+PI HF+E+LAG TI A
Sbjct: 1160 IAWVSPFIILAMVPVGALFYFIQKYYLNSSRELTRLEGVSRSPIYAHFSETLAGVTTIRA 1219
Query: 1136 FDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIIN 1195
F RF N L+D + + ++ N+S+ WL RL L + + +++ V L I
Sbjct: 1220 FKDVARFVTENERLLDENQKCYYINISSNRWLAIRLEFLGACLVSCAVLYTV-LARSRIE 1278
Query: 1196 PSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSN 1255
AGL +TY + + ++ C+ EN ++S+ERI +Y LPSEAPL ++ P S
Sbjct: 1279 AGTAGLVITYALAITGNMNWMVRMSCDLENSVVSIERIQEYCLLPSEAPLFNDKSVPMS- 1337
Query: 1256 WPDVGTISFHNLQIRYAEHLPSVLKNISCTFPXXXXXXXXXXXXXXXXXLIQAIFRIVEP 1315
WP G I F NL + Y E L VL+ I+CT L QA+FR+VEP
Sbjct: 1338 WPSHGKIVFKNLWLTYREGLDPVLRGINCTIEPKTKVGIVGRTGAGKSSLTQALFRLVEP 1397
Query: 1316 TMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKC 1375
G+I ID +DIT++GL+ LRSR+ IIPQDP LF G+VR NLDP QY D ++WEA++
Sbjct: 1398 LRGTIEIDGIDITELGLNPLRSRMAIIPQDPVLFAGSVRYNLDPFDQYDDHEIWEAIENA 1457
Query: 1376 QLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG 1435
L ++ + LD+ V + G+N+SVGQRQL +GR LLKK++I+VLDEA++S+D A+D
Sbjct: 1458 HLLKAIKDLDGGLDAMVQDGGDNFSVGQRQLLVIGRALLKKANIIVLDEASSSIDIASDA 1517
Query: 1436 VIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
+IQ+ I +F D TV+TIAHR+ T+ DSD ++VL G + EYDSP++LL+ +DS + L+
Sbjct: 1518 LIQETIRTKFADCTVLTIAHRLGTIADSDKIMVLDKGELIEYDSPSELLKNQDSIYYSLV 1577
Query: 1496 KEYSMRSQNFNS 1507
K S QN ++
Sbjct: 1578 KA-SESKQNIDN 1588
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P33527 | MRP1_HUMAN | No assigned EC number | 0.3527 | 0.8255 | 0.8158 | yes | no |
| Q8HXQ5 | MRP1_BOVIN | No assigned EC number | 0.3484 | 0.8255 | 0.8163 | yes | no |
| Q6UR05 | MRP1_CANFA | No assigned EC number | 0.3574 | 0.8222 | 0.8125 | yes | no |
| Q5F364 | MRP1_CHICK | No assigned EC number | 0.3459 | 0.8274 | 0.8209 | yes | no |
| Q8CG09 | MRP1_RAT | No assigned EC number | 0.3466 | 0.8222 | 0.8120 | yes | no |
| P39109 | YCFI_YEAST | No assigned EC number | 0.3476 | 0.8671 | 0.8660 | yes | no |
| Q9P5N0 | ABC3_SCHPO | No assigned EC number | 0.3597 | 0.8347 | 0.8621 | yes | no |
| O35379 | MRP1_MOUSE | No assigned EC number | 0.3459 | 0.8268 | 0.8187 | yes | no |
| Q9M1C7 | AB9C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.6735 | 0.9709 | 0.9754 | yes | no |
| Q54U44 | ABCCC_DICDI | No assigned EC number | 0.3503 | 0.8043 | 0.9198 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3.44 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1513 | |||
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-159 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-122 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-103 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-92 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 7e-91 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-84 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 8e-80 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-75 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 5e-70 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-63 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-62 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-60 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-57 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-56 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 7e-56 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-55 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-54 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 5e-54 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 6e-53 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-52 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-52 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-50 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 7e-49 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-45 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-44 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 5e-44 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-43 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-43 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 5e-42 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 9e-42 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-41 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-40 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 8e-40 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-39 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-39 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-39 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 7e-39 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-38 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 8e-38 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 8e-38 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-37 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-37 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 6e-37 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-36 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-36 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 8e-36 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-35 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-34 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-34 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 4e-34 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 6e-34 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 8e-34 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-33 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-33 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-33 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-32 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-32 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-32 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-32 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-32 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-32 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-31 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-31 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-30 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 4e-30 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-30 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-29 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 1e-29 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-28 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 7e-28 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 9e-28 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-27 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-27 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-27 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-27 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-27 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 5e-27 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 5e-27 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 7e-27 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-26 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-26 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-26 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-26 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-26 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-26 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 6e-26 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-26 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 6e-26 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 9e-26 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-25 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-24 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-24 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-24 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-24 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-24 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-24 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-24 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-24 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-23 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-23 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 5e-23 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 6e-23 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 6e-23 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 6e-23 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-23 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 8e-23 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 9e-23 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 9e-23 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-22 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-22 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-22 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-22 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-22 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 4e-22 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 5e-22 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-22 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-21 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 3e-21 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-21 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-21 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-21 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 6e-21 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-21 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 9e-21 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-20 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-20 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-20 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-20 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-20 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 6e-20 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 6e-20 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 7e-20 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 9e-20 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-19 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-19 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-19 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-19 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-19 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 8e-19 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-18 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-18 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-18 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-18 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-18 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-18 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-18 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-18 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-18 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-18 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-18 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-18 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-18 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 3e-18 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 4e-18 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 4e-18 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-18 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 5e-18 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-18 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 7e-18 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 7e-18 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 7e-18 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 9e-18 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-17 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-17 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-17 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-17 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-17 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-17 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-17 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-17 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-17 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-17 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-17 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-17 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-17 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-17 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 4e-17 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-17 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 5e-17 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 6e-17 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 7e-17 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 7e-17 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-17 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-16 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-16 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-16 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-16 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-16 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-16 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-16 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-16 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-16 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-16 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-16 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 6e-16 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 7e-16 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 7e-16 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 8e-16 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 9e-16 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-15 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-15 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-15 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-15 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-15 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-15 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-15 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-15 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-15 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-15 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-15 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-15 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 3e-15 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-15 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-15 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 4e-15 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 4e-15 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-15 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 4e-15 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 5e-15 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 5e-15 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 6e-15 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 7e-15 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 8e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 9e-15 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 9e-15 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-14 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-14 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-14 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 1e-14 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-14 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-14 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-14 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-14 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-14 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-14 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-14 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-14 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-14 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-14 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-14 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-14 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-14 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-14 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-14 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 6e-14 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 6e-14 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 6e-14 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 7e-14 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 7e-14 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 8e-14 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 8e-14 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 8e-14 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 8e-14 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 9e-14 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-13 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-13 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-13 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-13 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-13 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-13 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-13 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-13 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-13 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-13 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-13 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-13 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-13 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-13 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 3e-13 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-13 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-13 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-13 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-13 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-13 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-13 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-13 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 4e-13 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-13 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 5e-13 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-13 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 5e-13 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 5e-13 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 5e-13 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 5e-13 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 6e-13 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 6e-13 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 7e-13 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 7e-13 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 9e-13 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 9e-13 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-12 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-12 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-12 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-12 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-12 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-12 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-12 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-12 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-12 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-12 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-12 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-12 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 3e-12 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-12 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 3e-12 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 4e-12 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-12 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 4e-12 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 5e-12 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 5e-12 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 5e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 5e-12 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 5e-12 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 6e-12 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 6e-12 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 6e-12 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 7e-12 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 7e-12 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-12 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 7e-12 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 8e-12 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 8e-12 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 9e-12 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-11 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-11 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-11 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-11 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-11 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-11 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-11 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-11 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-11 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-11 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 3e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-11 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-11 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-11 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-11 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-11 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 4e-11 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 4e-11 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 5e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-11 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 7e-11 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 7e-11 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 8e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 9e-11 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 9e-11 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 9e-11 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-10 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-10 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-10 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-10 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-10 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-10 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-10 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-10 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-10 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-10 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-10 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-10 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 2e-10 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-10 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-10 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-10 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-10 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 3e-10 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-10 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-10 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-10 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-10 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-10 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-10 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-10 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 6e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 6e-10 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 6e-10 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-10 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 6e-10 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 6e-10 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 7e-10 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 7e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 8e-10 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 9e-10 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 9e-10 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 9e-10 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-09 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-09 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-09 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-09 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-09 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 1e-09 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-09 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-09 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-09 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-09 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-09 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-09 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-09 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-09 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-09 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-09 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-09 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-09 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-09 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-09 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-09 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 3e-09 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-09 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 4e-09 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 5e-09 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-09 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 6e-09 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 6e-09 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 7e-09 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 8e-09 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 9e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-08 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-08 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-08 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-08 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-08 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-08 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-08 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-08 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-08 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-08 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-08 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-08 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-08 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-08 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 3e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-08 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-08 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-08 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-08 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 4e-08 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 4e-08 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 5e-08 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-08 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 5e-08 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 5e-08 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 6e-08 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 6e-08 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 6e-08 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 6e-08 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 6e-08 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 6e-08 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 6e-08 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 6e-08 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 7e-08 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 7e-08 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 7e-08 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 7e-08 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 8e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 8e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 9e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 9e-08 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 9e-08 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 9e-08 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-07 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-07 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-07 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-07 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-07 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-07 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-07 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-07 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-07 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-07 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-07 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 3e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-07 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-07 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 3e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-07 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 5e-07 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 5e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-07 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-07 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 5e-07 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-07 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-07 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 6e-07 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 6e-07 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 7e-07 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 8e-07 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 8e-07 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 9e-07 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-06 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-06 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-06 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-06 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-06 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-06 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 3e-06 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-06 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-06 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-06 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 4e-06 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 4e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-06 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 4e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-06 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 6e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 6e-06 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 7e-06 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 7e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 7e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 7e-06 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 7e-06 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 8e-06 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 8e-06 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 8e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-06 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 9e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 9e-06 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-05 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 2e-05 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-05 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-05 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-05 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-05 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-05 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-05 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 2e-05 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-05 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-05 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 3e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-05 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-05 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-05 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 3e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-05 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-05 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 4e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 4e-05 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 4e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 5e-05 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-05 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 5e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 6e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 6e-05 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 7e-05 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 7e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 8e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-04 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-04 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-04 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 4e-04 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 5e-04 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 6e-04 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 7e-04 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 8e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 9e-04 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 0.001 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 0.001 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 0.001 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 0.001 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 0.001 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 0.002 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 0.002 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 0.002 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.002 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 0.002 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 0.003 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 0.003 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.003 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.003 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 0.003 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 0.004 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 0.004 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 880 bits (2276), Expect = 0.0
Identities = 456/1319 (34%), Positives = 734/1319 (55%), Gaps = 70/1319 (5%)
Query: 238 PYGKSTLLQLVTFSWLNPLFAVGIKKPLELDDIPDVDIKDSAEF----LSNRFEQDLD-- 291
P ++ L +TF W+ + G ++PLE D+ ++ +D++E L ++++
Sbjct: 203 PESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKT 262
Query: 292 --------------------------------LVKEKEGSTNPSIYKAIFFFIRKKAAIN 319
+VK PS++K ++ ++
Sbjct: 263 RKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMS 322
Query: 320 ASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFG 379
F I+ ++GP +++ + F+ D + + + L F+ A ++T+ Q+
Sbjct: 323 FCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCA-CLQTLILHQYFHI 381
Query: 380 ARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMFML 439
G+R++ A++ +YRK L +++ +R+S T GEI+N MSVD QR D Y N ++
Sbjct: 382 CFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSA 441
Query: 440 PVQISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSE 499
P+Q+ LA+Y L NLG LA +A + ++ N + K +Q M +KDNR++ +E
Sbjct: 442 PLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNE 501
Query: 500 VLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWGSPTFISVVTFGA 559
+L +K LKL AW+ FL K+E +RQ E L KS L A F + +P ++++TF
Sbjct: 502 ILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAV 561
Query: 560 CMLLGIQ--LTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQR 617
+ + L A + +LA F +L+ P+ LP ++S+I Q VS R+ +L +E++
Sbjct: 562 YVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEP 621
Query: 618 DAVEYVP-KGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSL 676
D++E K + V N F+W PTL+GI + G VA+ G VG GKSSL
Sbjct: 622 DSIERRTIKPGEGNSITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSL 680
Query: 677 LSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALV 736
LS +L E+ K+ G V + G+ AYVPQ WI ++RENILFG + Y + +EACAL+
Sbjct: 681 LSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALL 740
Query: 737 KDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLF 796
D E+ SGD TEIGE+G+N+SGGQKQR+ +ARAVY +ADIYL DDP SAVDAH G +F
Sbjct: 741 PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 800
Query: 797 KDCL--MGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVG 854
+ + G+LK+K+ + VTH + +LP D+I+VM G+I++ G ++ELL+++ F +
Sbjct: 801 EHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLR 860
Query: 855 AHSQALESVLTVETSSRTSQDPTPESELN------------------SDSTSNVKLVHSQ 896
++ + ++ + E++L S S+S+
Sbjct: 861 TYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRH 920
Query: 897 HDSEHELSL-EITEKGGKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQV 955
H S EL E E+ KL++ ++ + G + VYW Y+ A+ I L + V
Sbjct: 921 HGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCN-HV 979
Query: 956 LQVASNYWM-AWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQ 1014
+ASNYW+ W P +G ++ L VY L + V +M V+I G++ ++
Sbjct: 980 SALASNYWLSLWTDDPMVNGTQN-NTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASR 1038
Query: 1015 KLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIG 1074
L ++LH+ R+PM+FF+ TP+G ++NR S + +D + + S+ ++G +
Sbjct: 1039 VLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGAL- 1097
Query: 1075 VMSQVAWQVFVIFIPVTGICIWY-QQYYIPTARELARLAEIQRAPILHHFAESLAGAATI 1133
++ +A + + IP G+ ++ Q++Y+ ++R+L RL + R+P+ HF E+L G + I
Sbjct: 1098 IVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVI 1157
Query: 1134 HAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGI 1193
AF++++RF + + +D + + ++ ++ A WL RL + N + F+ + V +
Sbjct: 1158 RAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV-ISRHS 1216
Query: 1194 INPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPP 1253
++ + GL+V+Y + + ++ E +++VER+ +YS EAP +E PP
Sbjct: 1217 LSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPP 1276
Query: 1254 SNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIV 1313
S WP G + F N +RY E L VL++I+ T G +KVG+VGRTG+GKS+L +FRI
Sbjct: 1277 SGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN 1336
Query: 1314 EPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALD 1373
E G IIID ++I KIGLHDLR ++ IIPQDP LF G++R NLDP QYSD++VW AL+
Sbjct: 1337 ESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALE 1396
Query: 1374 KCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT 1433
L V A +KLD AE GEN SVGQRQL CL R LL+K+ ILVLDEATA+VD T
Sbjct: 1397 LAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET 1456
Query: 1434 DGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFS 1492
D +IQ I +F+D TV+TIAHR++T++D V+VL G +AE+ +P+ LL++ F+S
Sbjct: 1457 DNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYS 1515
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 867 bits (2242), Expect = 0.0
Identities = 465/1274 (36%), Positives = 712/1274 (55%), Gaps = 44/1274 (3%)
Query: 238 PYGKSTLLQLVTFSWLNPLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLDLVKEKE 297
P + + + F W+ PL +G K+PL D+ +D D E L F++ D E+
Sbjct: 228 PERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWD---EEL 284
Query: 298 GSTNPSIYKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYL 357
P + +A+ + + + F + N + +VGP L+N + + + GY+
Sbjct: 285 KKPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESM--QNGEPAWIGYI 342
Query: 358 LALA-FLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEII 416
A + F+G ++ + + Q+ ++G RLR+ L++ ++RK L L+ + R+ TSG+I
Sbjct: 343 YAFSIFVGV-VLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKIT 401
Query: 417 NYMSVDVQRISDFIFYSNYMFMLPVQISLAIYILRTNLGLGSL-AALAATLTVMTCNIPI 475
N M+ D + + + ++ P +I +A+ +L LG+ SL +L L I
Sbjct: 402 NLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFII 461
Query: 476 TRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSL 535
+++QK + + D R+ +EVL M T+K AW+ F K++++R E W K+
Sbjct: 462 SKMQK-LTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQ 520
Query: 536 RLSATSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSN 595
LSA ++FI P ++VV+FG LLG LT R ++L+ F +L+ P+F LP+L++
Sbjct: 521 LLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQ 580
Query: 596 IAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQL 655
VS R+ L +E R + P + + NG FSW+ ++ PTL I L
Sbjct: 581 AVNANVSLKRLEELLLAEE--RVLLPNPPLEPGLPAISIKNGYFSWDSKAERPTLSNINL 638
Query: 656 KVKRGMKVAICGTVGSGKSSLLSCILGEIQKMA-GTVKISGTKAYVPQSPWILTGNIREN 714
V G VAI G+ G GK+SL+S +LGE+ + +V I GT AYVPQ WI +R+N
Sbjct: 639 DVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDN 698
Query: 715 ILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQD 774
ILFG+ +D +Y+R ++ AL D +L GDLTEIGERG+N+SGGQKQR+ +ARAVY +
Sbjct: 699 ILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSN 758
Query: 775 ADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIA 834
+D+Y+ DDP SA+DAH G Q+F C+ L+ K+ + VT+Q+ FL D I+++ G I
Sbjct: 759 SDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIK 818
Query: 835 QAGRFEELLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVH 894
+ G +EEL F+ L +E+ +E E D TS+ + +
Sbjct: 819 EEGTYEELSNNGPLFQKL-------MENAGKMEEYVEE------NGEEEDDQTSSKPVAN 865
Query: 895 SQHDS-EHELSLEITEKGGK--LVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQS 951
++ + + S + K GK L+++EERE G + +V Y A+ G +V I+ L
Sbjct: 866 GNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYV 925
Query: 952 SFQVLQVASNYWMA-WASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGL 1010
+V +V+S+ W++ W T G L+Y LL+ G L LL + + ++ L
Sbjct: 926 LTEVFRVSSSTWLSEWTDQGTPKTH---GPLFYNLIYALLSFGQVLVTLLNSYWLIMSSL 982
Query: 1011 RTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQIL 1070
A++L ML S+ RAPM+FF + P GRI+NR + D +D +A + I Q+L
Sbjct: 983 YAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLL 1042
Query: 1071 GT---IGVMSQVA-WQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAES 1126
T IG++S ++ W + + + G ++YQ TARE+ RL I R+P+ F E+
Sbjct: 1043 STFVLIGIVSTISLWAIMPLLVLFYGAYLYYQS----TAREVKRLDSITRSPVYAQFGEA 1098
Query: 1127 LAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVL 1186
L G +TI A+ DR N +DN+ R N+S+ WL RL L + +
Sbjct: 1099 LNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFA 1158
Query: 1187 VTLPEGIINP----SIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSE 1242
V N S GL ++Y +N+ L +++ AEN + +VER+ Y +LPSE
Sbjct: 1159 VMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSE 1218
Query: 1243 APLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGK 1302
APLV E RPP WP G+I F ++ +RY LP VL +S +KVG+VGRTG+GK
Sbjct: 1219 APLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGK 1278
Query: 1303 STLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQ 1362
S+++ A+FRIVE G I+ID DI+K GL DLR LGIIPQ P LF GTVR NLDP +
Sbjct: 1279 SSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNE 1338
Query: 1363 YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVL 1422
++D +WE+L++ L D++R LD+ V+E GEN+SVGQRQL L R LL++S ILVL
Sbjct: 1339 HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVL 1398
Query: 1423 DEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTK 1482
DEATA+VD TD +IQK I +EFK T++ IAHR++T+ID D +LVL GR+ E+D+P
Sbjct: 1399 DEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPEN 1458
Query: 1483 LLEREDSFFSQLIK 1496
LL E S FS++++
Sbjct: 1459 LLSNEGSAFSKMVQ 1472
|
Length = 1622 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 796 bits (2057), Expect = 0.0
Identities = 486/1496 (32%), Positives = 770/1496 (51%), Gaps = 81/1496 (5%)
Query: 24 SPCFWEHIISIVVQLGFLGLLLLQLARTTLFRRLGADFRDLVVDKYPYGVKLGICYKASM 83
+PC + ++ IV LGL ++ A L Y + + CY
Sbjct: 30 TPCAIDSLVMIVSHSVLLGLCFYRIWIIL--DNAKAQIYVLRKKYYNCVLGILACYCVVE 87
Query: 84 VSSTLIFGTHFIILLTVMLNTGGEAEAVCNSGILAFSSRIMQVVSWASTLFLLCKIIPNS 143
L+ G + + E + +S +++ +W S L L+ +
Sbjct: 88 PVLRLVMGIS-------LFDMDEETDL----PPFEVASLMVEAFAWFSMLVLIG--LETK 134
Query: 144 AHVK-FPWILRAWWFCSFLFSILCTALHTYLRIRYRGQFRIQDYVDIIALLASTFLFGIS 202
+VK F W +R ++ ++ A+ L + + I+ LFGI
Sbjct: 135 QYVKEFRWYVRF----GVVYVLVADAVLLDLVLPLKNSINRTALYLCISSRCCQALFGIL 190
Query: 203 IQGKTGLLLHTASSD--------TTEPFLNVKADKQFKSKRDSPYGKSTLLQLVTFSWLN 254
LL++ D E NV+ D + P +++ + FSW+
Sbjct: 191 ------LLVYIPELDPYPGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWMT 244
Query: 255 PLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLDLVKEKEGSTNPSIYKAIFFFIRK 314
PL +G +KP+ D+ +D D E L RF++ E+ P + +A+ +
Sbjct: 245 PLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQR---CWTEESRRPKPWLLRALNNSLGG 301
Query: 315 KAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQR 374
+ + F + + + +VGP +++ + + + + GY+ A + +
Sbjct: 302 RFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPAWV--GYVYAFLIFFGVTFGVLCES 359
Query: 375 QWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSN 434
Q+ ++G RLR+ L++ ++ K L L+ ++R++ SG++ N ++ D + +
Sbjct: 360 QYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLH 419
Query: 435 YMFMLPVQISLAIYILRTNLGLGSL-AALAATLTVMTCNIPITRIQKRFQSKIMDAKDNR 493
++ P +I +++ +L LG+ SL +L L + + + ++ ++ + + D R
Sbjct: 420 GLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKM-RKLTKEGLQWTDKR 478
Query: 494 MRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWGSPTFIS 553
+ +E+L +M T+K AW+ F +++ +R E W K+ LSA ++FI P ++
Sbjct: 479 VGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVT 538
Query: 554 VVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQED 613
+V+FG +LLG LT R ++L+ F +L+ P+ LP+LLS + VS RI L +
Sbjct: 539 LVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSE 598
Query: 614 EIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGK 673
E R + P + + NG FSW+ ++S PTL I L++ G VAI G G GK
Sbjct: 599 E--RILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGK 656
Query: 674 SSLLSCILGEIQKMAGT-VKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEA 732
+SL+S +LGE+ + V I G+ AYVPQ WI +RENILFG+ ++S +Y R ++
Sbjct: 657 TSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDV 716
Query: 733 CALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTG 792
AL D +L DLTEIGERG+N+SGGQKQR+ +ARAVY ++DIY+ DDP SA+DAH
Sbjct: 717 TALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVA 776
Query: 793 TQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVL 852
Q+F C+ LK K+ + VT+Q+ FLP D I+++ G I + G F EL K F+ L
Sbjct: 777 HQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKL 836
Query: 853 VGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGG 912
+E+ ++ + + + +L T +V SE L K G
Sbjct: 837 -------MENAGKMDATQEVNTNDENILKLGPTVTIDV--------SERNLGSTKQGKRG 881
Query: 913 K--LVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMA-WASP 969
+ LV++EERE G I V Y AV G +V I+L+ + +VL+V+S+ W++ W
Sbjct: 882 RSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQ 941
Query: 970 PTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPM 1029
T G IV VY LL G + + + L A++L ML+S+ RAPM
Sbjct: 942 STPKSYSP-GFYIV--VYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPM 998
Query: 1030 AFFDSTPTGRILNRASNDQSVLDLELAG------RLGWCAFSIIQILGTIGVMSQVAWQV 1083
FF + PTGR++NR S D +D +A W S ++GT+ +S W +
Sbjct: 999 LFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTIS--LWAI 1056
Query: 1084 FVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFT 1143
+ I ++YQ T+RE+ RL + R+PI F E+L G ++I A+ DR
Sbjct: 1057 MPLLILFYAAYLYYQS----TSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMA 1112
Query: 1144 NANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVF----AFSLVVLVTLPEGIINPSIA 1199
N +DN+ R N S+ WL RL L + F+++ S
Sbjct: 1113 KINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTM 1172
Query: 1200 GLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDV 1259
GL ++Y +N+ L + ++ AEN + SVER+ Y +LPSEA + E RP S WP
Sbjct: 1173 GLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSR 1232
Query: 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
G+I F ++ +RY LP VL +S +KVGVVGRTG+GKS+++ A+FRIVE G
Sbjct: 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGR 1292
Query: 1320 IIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGD 1379
I+ID+ D+ K GL DLR L IIPQ P LF GTVR N+DP +++D +WEAL++ + D
Sbjct: 1293 IMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKD 1352
Query: 1380 LVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQK 1439
++ LD+ V+E GEN+SVGQRQL L R LL++S ILVLDEATASVD TD +IQ+
Sbjct: 1353 VIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQR 1412
Query: 1440 IISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
I +EFK T++ IAHR++T+ID D +LVLS G++ EYDSP +LL R+ S F +++
Sbjct: 1413 TIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMV 1468
|
Length = 1495 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 522 bits (1346), Expect = e-159
Identities = 299/908 (32%), Positives = 453/908 (49%), Gaps = 69/908 (7%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709
L + + V RG + G GSGKS+LL +L + + G V + AYVPQ WI+
Sbjct: 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNA 735
Query: 710 NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIAR 769
+R NILF ++ D+ + V L D G TEIGE+G+N+SGGQK R+ +AR
Sbjct: 736 TVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLAR 795
Query: 770 AVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVME 829
AVY + D+YLLDDP SA+DAH G ++ ++C +G L K+ + THQV +P AD ++ +
Sbjct: 796 AVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALG 855
Query: 830 NGRIAQAGRFEELLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSN 889
+GR+ +G + + ++ ++ S++ ++E+ +
Sbjct: 856 DGRVEFSGSSADF------------MRTSLYATLAAELKENKDSKEGDADAEVAEVDAAP 903
Query: 890 VKLVHSQHDSEHELSLEITEKG-------GKLVQEEEREKGSIGKEVYWSYLTAVKGGAL 942
V + + G G+L+ EE+ GS+ Y +YL G
Sbjct: 904 GGAVDHEPPVAKQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHA 963
Query: 943 VPIILLAQSSFQVLQVASNYWMA-WASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLR 1001
+L + +++ V+S W++ W++ L L VY + + + V LR
Sbjct: 964 AGFVLATFAVTELVTVSSGVWLSMWST-----RSFKLSAATYLYVYLGIVLLGTFSVPLR 1018
Query: 1002 AMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAG---R 1058
L R ++ + ++L SV R M+FFD+TP GRILNR S D +LD L
Sbjct: 1019 FFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLY 1078
Query: 1059 LGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQ--QYYIPTARELARLAEIQR 1116
L C FSI +I V S A Q FV+ V ++Y+ Q+Y RE+ R+ + +
Sbjct: 1079 LLQCLFSICS---SILVTS--ASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAK 1133
Query: 1117 APILHHFAESLAGAATIHAFDQEDRFTNANLSLID-NHSRPWFHNVSAMEWLCFRLNLLS 1175
+P+ E+L G+ATI A+ + L +D +S + NV+ WL R+ LS
Sbjct: 1134 SPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVAN-RWLGVRVEFLS 1192
Query: 1176 N---FVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVER 1232
N V A V+ L + L++T + ++ + E M SVER
Sbjct: 1193 NIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVER 1252
Query: 1233 ILQYS-NLPSEA-----------------------PLVTEECRPPSNWPDV---GTISFH 1265
+L Y+ +P E +V E P S P G++ F
Sbjct: 1253 LLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFE 1312
Query: 1266 NLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNV 1325
+Q+RY E LP VL+ +S R+KVG+VGRTGSGKSTL+ R+VE G I ++
Sbjct: 1313 GVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGR 1372
Query: 1326 DITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKE 1385
+I GL +LR + +IPQDP LFDGTVR N+DP ++ S +VW AL+ L + V ++
Sbjct: 1373 EIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASES 1432
Query: 1386 EKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVL-DEATASVDSATDGVIQKIISQE 1444
E +DS V E G N+SVGQRQL C+ R LLKK S +L DEATA++D A D IQ +
Sbjct: 1433 EGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSA 1492
Query: 1445 FKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMR-SQ 1503
F TV+TIAHR+HTV D ++V+ G +AE SP +L+ S F +++ ++
Sbjct: 1493 FSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRSEAK 1552
Query: 1504 NFNSVAGR 1511
F + GR
Sbjct: 1553 RFLQLVGR 1560
|
Length = 1560 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 381 bits (981), Expect = e-122
Identities = 136/221 (61%), Positives = 170/221 (76%)
Query: 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
G I F N+ +RY +LP VLKNIS + +KVG+VGRTGSGKS+L+ A+FR+VE + GS
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 1320 IIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGD 1379
I+ID VDI+KIGLHDLRSR+ IIPQDP LF GT+R NLDP +YSD+++W+AL++ L +
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 1380 LVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQK 1439
V + LD+ V E GEN SVGQRQL CL R LL+KS ILVLDEATASVD TD +IQK
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 1440 IISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSP 1480
I + FKD TV+TIAHR+ T+IDSD +LVL GR+ E+DSP
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 327 bits (840), Expect = e-103
Identities = 114/204 (55%), Positives = 153/204 (75%), Gaps = 3/204 (1%)
Query: 632 VEVVNGKFSWNPES--SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAG 689
+ V + F+W+ +S TL I L+V +G VAI G VGSGKSSLLS +LGE++K++G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 690 TVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTE 749
+V + G+ AYV Q PWI G IRENILFG +D +Y++ ++ACAL D E+ GDLTE
Sbjct: 61 SVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTE 120
Query: 750 IGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD-KS 808
IGE+GIN+SGGQKQRI +ARAVY DADIYLLDDP SAVDAH G +F++C++G+L + K+
Sbjct: 121 IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKT 180
Query: 809 VLYVTHQVEFLPAADIILVMENGR 832
+ VTHQ++ LP AD I+V++NGR
Sbjct: 181 RILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 296 bits (759), Expect = 4e-92
Identities = 119/225 (52%), Positives = 150/225 (66%), Gaps = 18/225 (8%)
Query: 1256 WPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP 1315
WP+ G I NL +RYA LP VLKN+S +K+G+VGRTG+GKSTLI A+FR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 1316 TMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKC 1375
G I ID +DI+ I L DLRS L IIPQDPTLF GT+R NLDP +YSD++++ AL
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGAL--- 117
Query: 1376 QLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG 1435
V+E G N S GQRQL CL R LLK+ +LVLDEATAS+D ATD
Sbjct: 118 ---------------RVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 1436 VIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSP 1480
+IQK I +EF + T++TIAHR+ T+ID D +LV+ G + EYD P
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 306 bits (786), Expect = 7e-91
Identities = 146/519 (28%), Positives = 254/519 (48%), Gaps = 9/519 (1%)
Query: 981 NIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRI 1040
+LL+ LL + + L++ L + G + L ++ + R P++FFD +G +
Sbjct: 52 LELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDL 111
Query: 1041 LNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQY 1100
++R +ND + ++ L SI+ ++G++ ++ ++W++ +I + + +
Sbjct: 112 ISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSL 171
Query: 1101 YIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHN 1160
+R+L+R + ESL+G I AF EDR + R
Sbjct: 172 LARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRA 231
Query: 1161 VSAMEWLCFRLNLLSNFVFAFSL-VVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWN 1219
L + LLS+ L + + G + + Y + L +
Sbjct: 232 SRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEV 291
Query: 1220 ICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVL 1279
+ + + ER+ + L E P V + P +G+I F N+ Y P VL
Sbjct: 292 VSLLQRASAAAERLFE---LLDEEPEVEDP--PDPLKDTIGSIEFENVSFSYPGKKP-VL 345
Query: 1280 KNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339
K+IS + +KV +VG +GSGKSTLI+ + R+ +PT G I+ID +DI I L LR R+
Sbjct: 346 KDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405
Query: 1340 GIIPQDPTLFDGTVRGNLDP-LVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGEN 1398
GI+ QDP LF GT+R N+ +D+++ EAL + + + D+ V E G N
Sbjct: 406 GIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVN 465
Query: 1399 WSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIH 1458
S GQRQ + R LL+ IL+LDEAT+++D+ T+ +IQ + + K RT + IAHR+
Sbjct: 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLS 525
Query: 1459 TVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKE 1497
T+ ++D ++VL +GRI E + +LL + +++L +
Sbjct: 526 TIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQA 563
|
Length = 567 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 276 bits (708), Expect = 2e-84
Identities = 125/237 (52%), Positives = 172/237 (72%)
Query: 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
G I H+L +RY +L VLK++ +KVG+ GRTGSGKS+L A FR+V+ G
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 1320 IIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGD 1379
I+ID +DI+K+ LH LRSRL II QDP LF G++R NLDP + +D ++WEAL+ QL +
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 1380 LVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQK 1439
+V++ LD+ V E GEN+SVGQRQLFCL R ++KSSIL++DEATAS+D AT+ ++QK
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 1440 IISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIK 1496
++ F DRTVVTIAHR+ T++D+DLVLVLS G + E D+P LL +ED F+ L++
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVR 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 290 bits (744), Expect = 8e-80
Identities = 184/558 (32%), Positives = 288/558 (51%), Gaps = 53/558 (9%)
Query: 960 SNYWMAWASPPTSDGEPALGMNIVL-LVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFT 1018
S Y++ + T+D ALG L LV+TLLTV +++L
Sbjct: 923 SAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTV--------------------SKRLHE 962
Query: 1019 NMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLD--LELAGRLGWCAFSIIQ----ILGT 1072
MLHSV +APMA ++ GRILNR + D +++D L L F IQ +LG
Sbjct: 963 QMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLT------LFDFIQLTLIVLGA 1016
Query: 1073 IGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAAT 1132
I V+S + +F+ IPV I I + Y++ T+++L +L R+PI H SL G T
Sbjct: 1017 IFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWT 1076
Query: 1133 IHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEG 1192
I AF ++ F ++ H+ WF +S + W R++++ FVF F V + +
Sbjct: 1077 IRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDII--FVFFFIAVTFIAIGTN 1134
Query: 1193 IINPSIAGLAVTYGIN-LNVLQASIIWNICNAENKMISVERILQYSNLPSEAP------- 1244
G+ +T +N L+ LQ ++ +I + + M SV R+ ++ +LP E P
Sbjct: 1135 QDGEGEVGIILTLAMNILSTLQWAVNSSI-DVDGLMRSVSRVFKFIDLPQEEPRPSGGGG 1193
Query: 1245 -------LVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGR 1297
LV E WP G + L +Y E +VL+++S + G ++VG++GR
Sbjct: 1194 KYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGR 1253
Query: 1298 TGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL 1357
TGSGKSTL+ A+ R++ T G I ID V + L R G+IPQ +F GT R NL
Sbjct: 1254 TGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNL 1312
Query: 1358 DPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKS 1417
DP Q+SD+++W+ ++ L ++ +KLD + + G S G +QL CL R++L K+
Sbjct: 1313 DPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKA 1372
Query: 1418 SILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEY 1477
IL+LDE +A +D T +I+K + Q F + TV+ HR+ +++ LV+ + +Y
Sbjct: 1373 KILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQY 1432
Query: 1478 DSPTKLLEREDSFFSQLI 1495
DS KLL E S F Q +
Sbjct: 1433 DSIQKLLN-ETSLFKQAM 1449
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 276 bits (706), Expect = 3e-75
Identities = 193/660 (29%), Positives = 319/660 (48%), Gaps = 83/660 (12%)
Query: 237 SPYGKSTLLQLVTFSWLNPLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLD--LVK 294
SP K+ L + F W P+ G ++ LEL DI + DSA+ LS R E++ D L
Sbjct: 4 SPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELAS 63
Query: 295 EKEGSTNPSIYKAI---FFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRS 351
K+ NP + A+ FF+ + AT V P L+ + +
Sbjct: 64 AKK---NPKLLNALRRCFFW---RFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPE 117
Query: 352 LESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHT 411
E Y LAL +V T+ IFG LG+++R AL S +Y+K L LSS+ +
Sbjct: 118 REIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKIS 177
Query: 412 SGEIINYMSVDVQRISDFIFYSNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTC 471
+G++++ +S ++ + + + ++++++ P+Q+ L + ++ L + L + +
Sbjct: 178 TGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALF 237
Query: 472 NIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWL 531
+ + ++ K R+ TSE+++N++++K W+ + ++++RQ E
Sbjct: 238 QACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLT 297
Query: 532 WK--SLRLSATSAFIFWGS-PTFISVV---------------TFGACMLLGIQLTAGRVL 573
K LR +SAF F G F+SVV T C++L + +T
Sbjct: 298 RKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIKGIILRRIFTTISYCIVLRMTVT----- 352
Query: 574 SALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVE 633
R I D L I +I +L ++E + +EY + EVE
Sbjct: 353 ------RQFPGAIQTWYDSLGAI-------TKIQDFLCKEEYK--TLEY---NLTTTEVE 394
Query: 634 VVNGKFSW---------------------NPESS----------SPTLDGIQLKVKRGMK 662
+VN SW N + +P L I K+++G
Sbjct: 395 MVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQL 454
Query: 663 VAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYD 722
+A+ G+ GSGKSSLL I+GE++ G +K SG ++ PQ+ WI+ G I++NI+FG YD
Sbjct: 455 LAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYD 514
Query: 723 SCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDD 782
+Y ++AC L +D LF D T +GE GI +SGGQ+ RI +ARAVY+DAD+YLLD
Sbjct: 515 EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDS 574
Query: 783 PFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEEL 842
PF+ +D T ++F+ CL ++ +K+ + VT ++E L AD IL++ G G F EL
Sbjct: 575 PFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 246 bits (629), Expect = 5e-70
Identities = 140/568 (24%), Positives = 244/568 (42%), Gaps = 37/568 (6%)
Query: 302 PSIYKAIFFFIRKKAAINASFA-VINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLAL 360
S+ + + +++ K + A +++A S + P LI ++ L LE LL L
Sbjct: 1 LSLLRRLLKYLKYKLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLL 60
Query: 361 AFLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMS 420
L ++ + +++ LR L L L L SG++I+ ++
Sbjct: 61 LALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKL----LRLPLSFFDKAKSGDLISRLT 116
Query: 421 VDVQRISDFIF-YSNYMFMLPVQ-ISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRI 478
DV+ +S+ + +F + I + + + L +L L + + R
Sbjct: 117 NDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRL-ALILLLILPLLALVLSLLARK 175
Query: 479 QKRFQSKIMDAKDNRMRATSEVLKNMKTLKL----QAWDTRFLQKLESLRQVECIWLWKS 534
++ ++ +A E L ++ +K RF + E LR+
Sbjct: 176 SRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLE 235
Query: 535 LRLSATSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLS 594
L+ + + V+ G ++L LT G + + + L PI L +++S
Sbjct: 236 ALLAPLMLLLSSLG--TVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVS 293
Query: 595 NIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQ 654
+ + +A+R+ L E+ D P + +E N FS+ + P L I
Sbjct: 294 LLQRASAAAERLFELLDEEPEVED--PPDPLKDTIGSIEFENVSFSYPGKK--PVLKDIS 349
Query: 655 LKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-------------AYVP 701
++ G KVAI G GSGKS+L+ +L +G + I G V
Sbjct: 350 FSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVS 409
Query: 702 QSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFAS---GDLTEIGERGINMS 758
Q P + +G IRENI G + + EA L E A+ G T +GERG+N+S
Sbjct: 410 QDPLLFSGTIRENIALGRPDAT--DEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLS 467
Query: 759 GGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEF 818
GGQ+QR+ IARA+ ++ I +LD+ SA+D T + L +LK ++ L + H++
Sbjct: 468 GGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDA-LKKLLKGRTTLIIAHRLST 526
Query: 819 LPAADIILVMENGRIAQAGRFEELLKQN 846
+ AD I+V++NGRI + G EELL +
Sbjct: 527 IKNADRIIVLDNGRIVERGTHEELLAKG 554
|
Length = 567 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 230 bits (588), Expect = 2e-63
Identities = 135/532 (25%), Positives = 233/532 (43%), Gaps = 52/532 (9%)
Query: 981 NIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRI 1040
++ + L + +L LLR L+A G R +L + R P+++F+ G I
Sbjct: 194 TVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEI 253
Query: 1041 LNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVM----SQVAWQVFVIFIPVTGICIW 1096
++R + + + L G + ++ L + VM ++ V I +
Sbjct: 254 ISRVRELEQIREF-LTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLI 312
Query: 1097 YQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFT-----------NA 1145
+Q R+L + Q++ E++ G T+ A E RF N
Sbjct: 313 FQPLLRRKTRKLIEESAEQQS----FLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNI 368
Query: 1146 NLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFA-FSLVVLVTLPEGIINP--SIAGLA 1202
LN + + + S+++L ++ ++ L
Sbjct: 369 GFKTEKLALI---------------LNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLV 413
Query: 1203 VTYGINLNVLQASIIWNICNAENKM----ISVERILQYSNLPSEAPLVTEECRPPSNWPD 1258
+ S I + +++ER+ + P E +
Sbjct: 414 AFNMLAGYF--ISPITRLSQLWTDFQQAKVALERLGDILDTPPEQE---GDKTLIHLPKL 468
Query: 1259 VGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMG 1318
G I F N+ RY P VL+++S P +KV +VGR+GSGKSTL++ + + +P G
Sbjct: 469 QGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG 528
Query: 1319 SIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL---DPLVQYSDKQVWEALDKC 1375
I++D VD+ I L LR ++G + QDP LF G++R N+ +P + +D+++ EA
Sbjct: 529 RILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP--EATDEEIIEAAQLA 586
Query: 1376 QLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG 1435
+ + D+ V E G N S GQRQ L R LL K IL+LDEAT+++D T+
Sbjct: 587 GAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEA 646
Query: 1436 VIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLERE 1487
+I + + Q + RTV+ IAHR+ T+ +D ++VL G+I E S +LL +
Sbjct: 647 IILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQG 698
|
Length = 709 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 2e-62
Identities = 84/228 (36%), Positives = 130/228 (57%), Gaps = 2/228 (0%)
Query: 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
G I F N+ Y E P VLK+I+ + + V +VG TG+GK+TLI + R +P G
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 1320 IIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDK-CQLG 1378
I+ID +DI I LRS +G++ QD LF GT+ N+ + + K
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 1379 DLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQ 1438
D + D+ + ENG N S G+RQL + R +L+ IL+LDEAT+++D+ T+ +IQ
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 1439 KIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLER 1486
+ + + K RT + IAHR+ T+ ++D +LVL DG+I E + +LL +
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 207 bits (529), Expect = 1e-60
Identities = 88/230 (38%), Positives = 138/230 (60%), Gaps = 10/230 (4%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I F N+ Y P VLK++S T P KKV +VG +GSGKST+++ +FR + + GSI+
Sbjct: 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQY-----SDKQVWEALDKCQ 1376
ID DI ++ L LR +G++PQD LF+ T+ N ++Y +D++V EA Q
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYN----IRYGRPDATDEEVIEAAKAAQ 115
Query: 1377 LGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGV 1436
+ D + + D+ V E G S G++Q + R +LK IL+LDEAT+++D+ T+
Sbjct: 116 IHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTERE 175
Query: 1437 IQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLER 1486
IQ + K RT + IAHR+ T++++D ++VL DGRI E + +LL +
Sbjct: 176 IQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK 225
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 195 bits (499), Expect = 2e-57
Identities = 75/212 (35%), Positives = 110/212 (51%), Gaps = 41/212 (19%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I F N+ Y VLK++S T +KV +VG +GSGKSTL++ + R+ +PT G I+
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLV 1381
ID VD+ + L LR + +PQDP LF GT+R N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 1382 RAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKII 1441
S GQRQ + R LL+ IL+LDEAT+++D T+ +I + +
Sbjct: 97 -----------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL 139
Query: 1442 SQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGR 1473
K +TV+ IAHR+ T+ D+D ++VL DGR
Sbjct: 140 RALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 1e-56
Identities = 97/242 (40%), Positives = 141/242 (58%), Gaps = 8/242 (3%)
Query: 639 FSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKA 698
FS +P L I LK+++G +AI G+ GSGK+SLL ILGE++ G +K SG +
Sbjct: 42 FSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRIS 101
Query: 699 YVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMS 758
+ Q WI+ G I+ENI+FG YD +Y V+AC L +D F D T +GE GI +S
Sbjct: 102 FSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLS 161
Query: 759 GGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEF 818
GGQ+ RI +ARAVY+DAD+YLLD PF +D T ++F+ C+ ++ +K+ + VT ++E
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEH 221
Query: 819 LPAADIILVMENGRIAQAGRFEELLKQN-------IGFEVLVGAHSQALESVLTVETSSR 871
L AD IL++ G G F EL +G++ ++ S+LT ET R
Sbjct: 222 LKKADKILILHEGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFSAERRNSILT-ETLRR 280
Query: 872 TS 873
S
Sbjct: 281 FS 282
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 193 bits (494), Expect = 7e-56
Identities = 81/231 (35%), Positives = 128/231 (55%), Gaps = 9/231 (3%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ F N+ RY P VL++IS P + V +VG +GSGKSTL+ I R + G I+
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQY-----SDKQVWEALDKCQ 1376
ID D+ L LR ++G++ QD LF+ TV N + Y + ++V EA
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAEN----IAYGRPGATREEVEEAARAAN 116
Query: 1377 LGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGV 1436
+ + E D+ + E G S GQRQ + R LLK IL+LDEAT+++D+ ++ +
Sbjct: 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERL 176
Query: 1437 IQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLERE 1487
+Q + + K+RT IAHR+ T+ ++D ++VL DG+I E + +LL +
Sbjct: 177 VQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 207 bits (528), Expect = 1e-55
Identities = 152/546 (27%), Positives = 261/546 (47%), Gaps = 62/546 (11%)
Query: 340 FVNFLTDK--KSRSLESGYLLALAFLGAKMVETI--AQRQWIFG--ARQLGLRLRAALIS 393
F + DK S + +LA+ L A + E + R ++ ++L L L
Sbjct: 176 FSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFR 235
Query: 394 HLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMFMLPVQISLA------I 447
HL L L + + GEII+ + ++++I +F+ + + L + + A +
Sbjct: 236 HL----LRLPLSYFEKRSVGEIISRVR-ELEQIREFL--TGSILTLIIDLLFALIFLAVM 288
Query: 448 YILRTNLGLGSLAALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTL 507
++ L L LAA+ + + P+ R + R K+++ + E +K ++T+
Sbjct: 289 FLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTR---KLIEESAEQQSFLVETIKGIETV 345
Query: 508 KLQAWDTRFLQKLESLRQVECIWLWK----SLRLSATSAFIFWGSPTFISVVTFGACMLL 563
K A + RF + ++ + +K +L L+ + + S + ++ FGA ++L
Sbjct: 346 KALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSS--VLILWFGAILVL 403
Query: 564 GIQLTAGRVLSALATFRMLQD----PIFNLPDLLSNIAQGKVSADRIAAYL---QEDEIQ 616
+LT L L F ML PI L L ++ Q KV+ +R+ L E E
Sbjct: 404 EGELT----LGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD 459
Query: 617 RDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSL 676
+ + +PK + E E E V+ F + P+ P L+ + L++ G KVAI G GSGKS+L
Sbjct: 460 KTLIH-LPKLQGEIEFENVS--FRYGPDDP-PVLEDLSLEIPPGEKVAIVGRSGSGKSTL 515
Query: 677 LSCILGEIQKMAGTVKISGTK-------------AYVPQSPWILTGNIRENILFGNQYDS 723
L +LG + G + + G YV Q P++ +G+IRENI GN +
Sbjct: 516 LKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEAT 575
Query: 724 CKYDRTVEACALVK--DF-ELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLL 780
+ +EA L +F E G T +GE G N+SGGQ+QR+ +ARA+ I LL
Sbjct: 576 --DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLL 633
Query: 781 DDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFE 840
D+ SA+D T + L+ IL+ ++V+ + H++ + +AD I+V++ G+I + G E
Sbjct: 634 DEATSALDPET-EAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHE 692
Query: 841 ELLKQN 846
ELL Q
Sbjct: 693 ELLAQG 698
|
Length = 709 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 1e-54
Identities = 92/219 (42%), Positives = 131/219 (59%), Gaps = 21/219 (9%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
V+V NG FSW TL I +++ G I G VG GKSSLL ILGE+Q + G V
Sbjct: 1 VQVTNGYFSWGS--GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 692 KIS-----------------GTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACA 734
S + AY Q PW+L + ENI FG+ ++ +Y +AC+
Sbjct: 59 HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACS 118
Query: 735 LVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQ 794
L D +L GD TEIGERGIN+SGGQ+QRI +ARA+YQ+ +I LDDPFSA+D H
Sbjct: 119 LQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178
Query: 795 LFKDCLMGILKD--KSVLYVTHQVEFLPAADIILVMENG 831
L ++ ++ L+D ++++ VTH++++LP AD I+ M++G
Sbjct: 179 LMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 199 bits (508), Expect = 5e-54
Identities = 155/545 (28%), Positives = 262/545 (48%), Gaps = 67/545 (12%)
Query: 974 GEPALGMNIVLLV-YTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFF 1032
G LG+ L Y L + ++ +++L + Q+L T+++ + R P++ F
Sbjct: 57 GNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAF 116
Query: 1033 DSTPTGRILNRASNDQSVL-DLELAGRLGWCAFSIIQILGTIGVMS--------QVAWQV 1083
D+ P G++++R +ND V+ DL + ++++ IG M ++A
Sbjct: 117 DTQPVGQLISRVTNDTEVIRDLYVT-----VVATVLRSAALIGAMLVAMFSLDWRMALVA 171
Query: 1084 FVIFIPVTGICIWYQQYYIPTAREL-ARLAEIQRAPILHHFAESLAGAATIHAFDQEDRF 1142
+IF V + + YQ+Y P R + A LA+I F E + G + I F Q+ RF
Sbjct: 172 IMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDG-----FNEVINGMSVIQQFRQQARF 226
Query: 1143 TNANLSLIDNHSRPWFHNVSAMEWLCFRLN--LLSNFVFAFSLVVLVTL-------PEGI 1193
+ S H ++ M+ L RL+ LL + FS ++L L G
Sbjct: 227 GERMGE--ASRS----HYMARMQTL--RLDGFLLRPLLSLFSALILCGLLMLFGFSASGT 278
Query: 1194 INPSIAGLAVTYG-IN----LN------VLQASIIWNICNAENKMISVERILQYSNLPSE 1242
I + V Y I+ LN Q S++ + +++ ER+ + + P +
Sbjct: 279 I-----EVGVLYAFISYLGRLNEPLIELTTQQSML------QQAVVAGERVFELMDGPRQ 327
Query: 1243 APLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGK 1302
+ RP + G I N+ Y + VL+NI+ + P R V +VG TGSGK
Sbjct: 328 Q--YGNDDRPLQS----GRIDIDNVSFAYRDDNL-VLQNINLSVPSRGFVALVGHTGSGK 380
Query: 1303 STLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQ 1362
STL + T G I +D ++ + LR + ++ QDP + T N+
Sbjct: 381 STLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRD 440
Query: 1363 YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVL 1422
S++QVW+AL+ QL +L R+ + L + + E G N SVGQ+QL L R L++ IL+L
Sbjct: 441 ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILIL 500
Query: 1423 DEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTK 1482
DEATA++DS T+ IQ+ ++ + T+V IAHR+ T++++D +LVL G+ E + +
Sbjct: 501 DEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQ 560
Query: 1483 LLERE 1487
LL +
Sbjct: 561 LLAAQ 565
|
Length = 592 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 185 bits (473), Expect = 6e-53
Identities = 85/241 (35%), Positives = 143/241 (59%), Gaps = 18/241 (7%)
Query: 1262 ISFHNLQIRYAEHLPS-----VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPT 1316
I F N+ RY PS +LK +S T P K V +VG +G GKST++ + R +PT
Sbjct: 1 IEFKNVSFRY----PSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT 56
Query: 1317 MGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQY-----SDKQVWEA 1371
G I++D VDI + L LRS++G++ Q+P LFDGT+ N ++Y +D++V EA
Sbjct: 57 SGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAEN----IRYGKPDATDEEVEEA 112
Query: 1372 LDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDS 1431
K + D + + + D+ V E G S GQ+Q + R LL+ IL+LDEAT+++D+
Sbjct: 113 AKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDA 172
Query: 1432 ATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFF 1491
++ ++Q+ + + K RT + IAHR+ T+ ++DL+ VL +G++ E + +L+ ++ +
Sbjct: 173 ESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYA 232
Query: 1492 S 1492
Sbjct: 233 K 233
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 1e-52
Identities = 138/589 (23%), Positives = 233/589 (39%), Gaps = 69/589 (11%)
Query: 942 LVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLR 1001
LV LLA S + +A +A +G+ + +L++ + V + LR
Sbjct: 2 LVISALLAVLSG-IAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLR 60
Query: 1002 AMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGW 1061
L + L +L + + AF P G A L+ A L
Sbjct: 61 ERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQ 120
Query: 1062 CAFSIIQILGTIGVMSQVAWQ------VFVIFIPVTGICIWYQQYYIPTARELAR-LAEI 1114
S I L + + W + IP+ I + + + +
Sbjct: 121 MFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLA-----AKDASEKQFSAL 175
Query: 1115 QRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLL 1174
R + HF + L G T+ AF + + ++ + + M L R+ L
Sbjct: 176 AR--LSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRK------ATMSVL--RIAFL 225
Query: 1175 SNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINL---------NVLQASII-------- 1217
S+ V F SIA +AV G L L I+
Sbjct: 226 SSAVLEF-----------FAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPL 274
Query: 1218 ------WNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRY 1271
++ A L L S + IS NL RY
Sbjct: 275 RDLGSFFHAAAAGEAAADKLFTL----LESPVATPGSGEKAEVANEPPIEISLENLSFRY 330
Query: 1272 AEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG 1331
+ P L +++ T + +VG +G+GKSTL+ + + PT G I ++ +D+ +
Sbjct: 331 PDGKP-ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLS 389
Query: 1332 LHDLRSRLGIIPQDPTLFDGTVRGNL---DPLVQYSDKQVWEALDKCQLGDLVRAKEEKL 1388
R ++ + Q+P LF GT+R N+ P SD+++ ALD+ L + V K + L
Sbjct: 390 PEAWRKQISWVSQNPYLFAGTIRENILLARPDA--SDEEIIAALDQAGLLEFVP-KPDGL 446
Query: 1389 DSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDR 1448
D+ + E G S GQ Q L R LL +S+L+LDE TA +D+ T+ +I + + + K +
Sbjct: 447 DTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQK 506
Query: 1449 TVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKE 1497
TV+ I HR+ D+D ++VL +GR+ E + +L E + ++ L+K+
Sbjct: 507 TVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE-KQGLYANLLKQ 554
|
Length = 559 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 194 bits (495), Expect = 2e-52
Identities = 138/586 (23%), Positives = 250/586 (42%), Gaps = 40/586 (6%)
Query: 931 WSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLL 990
WSY+ K G ++ + + +L A+ +A P D VL L+
Sbjct: 6 WSYVRPYKAGLVLAGVAM------ILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLV 59
Query: 991 TVG----SSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASN 1046
+G +C + L++ + + + M + P++FFD PTG +L+R +
Sbjct: 60 VIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITF 119
Query: 1047 DQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTAR 1106
D + + ++G V+ +WQ+ +I + + + + R
Sbjct: 120 DSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLR 179
Query: 1107 ELARLAEIQRAPILHHFAESLAGAATIHAFDQED----RFTNANLSLIDNHSRPWFHNVS 1162
+++ + + E+L G + F + RF + + S
Sbjct: 180 RISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMK----MTS 235
Query: 1163 AMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASI--IWNI 1220
A L+++ A ++V+ + L + AG + + L + + N+
Sbjct: 236 AGSISSPITQLIASL--ALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNV 293
Query: 1221 CNAENKMI-SVERILQYSNLPSEA---PLVTEECRPPSNWPDVGTISFHNLQIRYAEHLP 1276
+ + + E + + P E E R G + F N+ RY
Sbjct: 294 NAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERAR--------GDVEFRNVTFRYPGRDR 345
Query: 1277 SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLR 1336
L +IS + V +VGR+GSGKSTL+ I R EP G I++D D+ L LR
Sbjct: 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLR 405
Query: 1337 SRLGIIPQDPTLFDGTVRGNL--DPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAE 1394
++ ++ QD LF+ T+ N+ Q ++ AL D V LD+ + E
Sbjct: 406 RQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGE 465
Query: 1395 NGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIA 1454
NG S GQRQ + R LLK + IL+LDEAT+++D+ ++ ++Q + + + RT + IA
Sbjct: 466 NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIA 525
Query: 1455 HRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSM 1500
HR+ T+ +D ++V+ DGRI E + +LL R + ++QL ++M
Sbjct: 526 HRLSTIEKADRIVVMDDGRIVERGTHNELLAR-NGLYAQL---HNM 567
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 1e-50
Identities = 91/236 (38%), Positives = 139/236 (58%), Gaps = 2/236 (0%)
Query: 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
G ++ +L +Y E +VL+NIS + ++VG++GRTGSGKSTL+ A R++ T G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 1320 IIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGD 1379
I ID V + L R G+IPQ +F GT R NLDP ++SD+++W+ ++ L
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 1380 LVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQK 1439
++ +LD + + G S G +QL CL R++L K+ IL+LDE +A +D T VI+K
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 1440 IISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
+ Q F D TV+ HRI +++ LV+ + ++ +YDS KLL E S F Q I
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN-EKSHFKQAI 234
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 7e-49
Identities = 121/444 (27%), Positives = 211/444 (47%), Gaps = 26/444 (5%)
Query: 1059 LGWCAFSIIQILGTIGVMSQVAWQVFVI-FIPVTGICIWYQQYYIPTARELARLAEIQRA 1117
L W F+I+ L I +++ + W+V+ F T + + Y + T + +R
Sbjct: 56 LRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVIL--YLLFTVIVSDWRTDFRRL 113
Query: 1118 P-----ILHHFA-ESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRL 1171
+ A +SL T+ F E+ ++ + + ++ L F
Sbjct: 114 MNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQ 173
Query: 1172 NLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMI--S 1229
+F+ L V++T+ + + +N + Q SI N + I +
Sbjct: 174 TA----IFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQA 229
Query: 1230 VERILQYSNLPSEAPLVTEECRPPSNWP-DVGTISFHNLQIRYAEHLPSVLKNISCTFPG 1288
+ + + +L V++ P WP +G ++F N+ Y P +L IS T P
Sbjct: 230 LTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPL 288
Query: 1289 RKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTL 1348
K V +VG +G+GKST+++ +FR + GSI ID DI + LR +GI+PQD L
Sbjct: 289 GKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVL 348
Query: 1349 FDGTVRGNLDPLVQY-----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQ 1403
F+ T+ N ++Y + ++V A + Q+ D +++ E D+ V E G S G+
Sbjct: 349 FNDTIAYN----IKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGE 404
Query: 1404 RQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDS 1463
+Q + RT+LK IL+LDEAT+++D+ T+ IQ + + RT + IAHR+ T+ID+
Sbjct: 405 KQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDA 464
Query: 1464 DLVLVLSDGRIAEYDSPTKLLERE 1487
D ++VL +GRI E + +LL
Sbjct: 465 DEIIVLDNGRIVERGTHEELLAAG 488
|
Length = 497 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 5e-45
Identities = 78/218 (35%), Positives = 120/218 (55%), Gaps = 5/218 (2%)
Query: 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
G I F N+ Y L N+S T +KV ++GR GSGKSTL++ + + +PT GS
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 1320 IIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL---DPLVQYSDKQVWEALDKCQ 1376
+++D DI ++ DLR +G +PQD TLF GT+R N+ PL D+++ A +
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLA--DDERILRAAELAG 118
Query: 1377 LGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGV 1436
+ D V LD + E G S GQRQ L R LL IL+LDE T+++D ++
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 1437 IQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRI 1474
+++ + Q D+T++ I HR + D ++V+ GRI
Sbjct: 179 LKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 173 bits (442), Expect = 1e-44
Identities = 90/269 (33%), Positives = 146/269 (54%), Gaps = 15/269 (5%)
Query: 1222 NAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDV-GTISFHNLQIRYAEHLPSVLK 1280
A+ + S++ ++Q LP E P E + P + G I F N+ Y L
Sbjct: 430 QAKTALQSLDELMQ---LPVERP----EGTRFLHRPRLQGEIEFRNVSFAYPGQETPALD 482
Query: 1281 NISCTF-PGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339
N+S T PG +KV ++GR GSGKSTL++ + + +PT GS+++D VDI +I DLR +
Sbjct: 483 NVSLTIRPG-EKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541
Query: 1340 GIIPQDPTLFDGTVRGNL---DPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENG 1396
G +PQDP LF GT+R N+ P D+++ A + + + VR + LD + E G
Sbjct: 542 GYVPQDPRLFYGTLRDNIALGAPYA--DDEEILRAAELAGVTEFVRRHPDGLDMQIGERG 599
Query: 1397 ENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHR 1456
+ S GQRQ L R LL+ IL+LDE T+++D+ ++ + + + +T+V + HR
Sbjct: 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHR 659
Query: 1457 IHTVIDSDLVLVLSDGRIAEYDSPTKLLE 1485
+ D ++V+ +GRI ++LE
Sbjct: 660 TSLLDLVDRIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 5e-44
Identities = 140/547 (25%), Positives = 248/547 (45%), Gaps = 63/547 (11%)
Query: 971 TSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMA 1030
G PAL I + LL++ SS+ LR T R ++ ++ S+ R +
Sbjct: 193 GDKGPPALASAIFFM--CLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLG 250
Query: 1031 FFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQ---VFVIF 1087
FFD TG + +R S+D + L+ + +++ +LG +G M ++ + V +I
Sbjct: 251 FFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLIN 310
Query: 1088 IPVTGIC-----IWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQE--- 1139
+P+ + YQ +A+ ++ E+L+G T+ +F E
Sbjct: 311 LPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAE--------EALSGMRTVRSFAAEEGE 362
Query: 1140 -DRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEG---IIN 1195
RF A + ++ + L + L + V + VLV G +
Sbjct: 363 ASRFKEAL-----EETLQ----LNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTG 413
Query: 1196 PSIAGLAVTY-------GINLNVLQASIIWNICNAENKMISV---ERILQYSNLPSEAPL 1245
+G V++ G + VL S +++ M +V E++ +Y + PL
Sbjct: 414 KVSSGNLVSFLLYQEQLGEAVRVL--SYVYS-----GMMQAVGASEKVFEYLDRKPNIPL 466
Query: 1246 VTEECRPPSNWPDVGTISFHNLQIRYAEHLPS--VLKNISCTF-PGRKKVGVVGRTGSGK 1302
T P G I F ++ Y P VLK ++ T PG + V +VG +GSGK
Sbjct: 467 -TGTLAPL---NLEGLIEFQDVSFSYPNR-PDVPVLKGLTFTLHPG-EVVALVGPSGSGK 520
Query: 1303 STLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLD-PLV 1361
ST+ + + +PT G +++D V + + H L ++ ++ Q+P LF G+VR N+ L
Sbjct: 521 STVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT 580
Query: 1362 QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILV 1421
D+++ A D + D+ V E G S GQ+Q + R L++K +L+
Sbjct: 581 DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLI 640
Query: 1422 LDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPT 1481
LDEAT+++D+ + ++Q+ S+ RTV+ IAHR+ TV +D +LVL G + E +
Sbjct: 641 LDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHK 698
Query: 1482 KLLERED 1488
+L+E +
Sbjct: 699 QLMEDQG 705
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 2e-43
Identities = 136/535 (25%), Positives = 228/535 (42%), Gaps = 65/535 (12%)
Query: 357 LLALAFLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEII 416
LL +A + + + +R A ++ LR ++ L + G +Q +G
Sbjct: 45 LLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQ----KPAGSAA 100
Query: 417 NYMSVDVQRISDF-IFYSNY--MFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTCNI 473
++ I +Y+ Y L + L I I + + AA A L + I
Sbjct: 101 TLA---LEGIEQLEPYYARYLPQMFLSAIVPLLILIA---IFFFNWAA-ALILLITAPLI 153
Query: 474 PITRIQKRFQSKIMDAKDNRMRATSEV-------LKNMKTLKL----QAWDTRFLQKLES 522
P+ I DA + + A + + L+ ++TL+ +A + R + E
Sbjct: 154 PLFMIL--VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSED 211
Query: 523 LRQVECIWLWKSLRLSATSAFI---FWGSPTFISVVTFGACMLLGIQLTAGRVLSALATF 579
R+ LR++ S+ + F + V G +L LT L L
Sbjct: 212 FRKATM----SVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVL--- 264
Query: 580 RMLQDPIFNLP--DLLS---NIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEV 634
+ P F P DL S A G+ +AD++ L+ + E +E+
Sbjct: 265 --ILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPP-IEI 321
Query: 635 VNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKIS 694
S+ P L + L +K G A+ G G+GKS+LL+ +LG + G ++++
Sbjct: 322 SLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVN 381
Query: 695 GTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEAC---ALVKD 738
G ++V Q+P++ G IRENIL S D + A A + +
Sbjct: 382 GIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDAS---DEEIIAALDQAGLLE 438
Query: 739 FELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKD 798
F G T IGE G +SGGQ QR+ +ARA+ A + LLD+P + +DA T Q+
Sbjct: 439 FVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAET-EQIILQ 497
Query: 799 CLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLV 853
L + K K+VL +TH++E AD I+V++NGR+ + G EEL ++ + L+
Sbjct: 498 ALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLL 552
|
Length = 559 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 4e-43
Identities = 75/270 (27%), Positives = 137/270 (50%), Gaps = 11/270 (4%)
Query: 1229 SVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPG 1288
S R+ +++ + P VT + + N+ Y LKN + T
Sbjct: 309 SARRL---NDILDQKPEVTFPDEQTA--TTGQALELRNVSFTYPGQQTKALKNFNLTLAQ 363
Query: 1289 RKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTL 1348
+KV ++GR+GSGKSTL+Q + +P GSI ++ V+I + LR + ++ Q L
Sbjct: 364 GEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHL 423
Query: 1349 FDGTVRGNL---DPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405
F GT+R NL +P SD+++W AL + L L+ + + L++ + E G S G+R+
Sbjct: 424 FSGTLRDNLRLANP--DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481
Query: 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDL 1465
L R LL + + +LDE T +D T+ + ++ + + +T++ + HR+ + D
Sbjct: 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDR 541
Query: 1466 VLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
++VL +G+I E + +LL + + +L
Sbjct: 542 IIVLDNGKIIEEGTHAELLA-NNGRYKRLY 570
|
Length = 573 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 5e-42
Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 25/237 (10%)
Query: 626 GRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQ 685
G EFE N FS++ + P L I +K G VAI G G+GK++L++ ++
Sbjct: 1 GEIEFE----NVNFSYDEKK--PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD 54
Query: 686 KMAGTVKISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEA 732
G + I G V Q ++ +G I ENI G + +EA
Sbjct: 55 PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPN--ATDEEVIEA 112
Query: 733 CALVK--DF-ELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDA 789
DF +G T +GE G N+S G++Q + IARA+ +D I +LD+ S +D
Sbjct: 113 AKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDT 172
Query: 790 HTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846
T +L ++ L ++K ++ + + H++ + AD ILV+++G+I + G +ELL +
Sbjct: 173 ET-EKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 9e-42
Identities = 95/368 (25%), Positives = 155/368 (42%), Gaps = 43/368 (11%)
Query: 1122 HFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAF 1181
HF + L G T+ F + A + + M L R+ LS+ V
Sbjct: 185 HFLDRLRGLPTLKLFGRAKAQAAAIRRSSEEYRE------RTMRVL--RIAFLSSAVLEL 236
Query: 1182 SLVVLVTLPEGIINPSIAGLAVTYGINLNV----LQASIIWNICNAE------------- 1224
TL S+A +AV G L L + + E
Sbjct: 237 ----FATL-------SVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGAQYH 285
Query: 1225 NKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISC 1284
+ V + AP P ++ F + + Y P L+ +S
Sbjct: 286 ARADGVAAAEALFAVLDAAPRPLAGKAP-VTAAPAPSLEFSGVSVAYPGRRP-ALRPVSF 343
Query: 1285 TFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQ 1344
T P ++V +VG +G+GKSTL+ + V+PT GSI ++ V + R ++ +PQ
Sbjct: 344 TVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQ 403
Query: 1345 DPTLFDGTVRGNL---DPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSV 1401
P LF GT+ N+ P SD ++ EAL++ L + V A + LD+ + E G S
Sbjct: 404 HPFLFAGTIAENIRLARPDA--SDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSG 461
Query: 1402 GQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVI 1461
GQ Q L R L+ + +L+LDE TA +D+ T+ + + + + RTV+ + HR+
Sbjct: 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAA 521
Query: 1462 DSDLVLVL 1469
+D ++VL
Sbjct: 522 LADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 2e-41
Identities = 81/236 (34%), Positives = 128/236 (54%), Gaps = 6/236 (2%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I+F +++ RY P +L NIS + VG+VGR+GSGKSTL + I R P G ++
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL---DPLVQYSDKQVWEALDKCQLG 1378
+D D+ LR ++G++ Q+ LF+ ++R N+ DP + S ++V EA
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGM--SMERVIEAAKLAGAH 118
Query: 1379 DLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQ 1438
D + E D+ V E G S GQRQ + R L+ IL+ DEAT+++D ++ I
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 1439 KIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQL 1494
+ + RTV+ IAHR+ TV ++D ++V+ GRI E S +LL ++ L
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAEN-GLYAYL 233
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 1e-40
Identities = 70/214 (32%), Positives = 99/214 (46%), Gaps = 56/214 (26%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
+E N FS+ P P L + L +K G KVAI G GSGKS+LL +L +G +
Sbjct: 1 IEFKNVSFSY-PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 692 KISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKD 738
I G AYVPQ P++ +G IRENIL
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENIL---------------------- 97
Query: 739 FELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKD 798
SGGQ+QRI IARA+ +D I +LD+ SA+D T L +
Sbjct: 98 -------------------SGGQRQRIAIARALLRDPPILILDEATSALDPET-EALILE 137
Query: 799 CLMGILKDKSVLYVTHQVEFLPAADIILVMENGR 832
L + K K+V+ + H++ + AD I+V+++GR
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 8e-40
Identities = 135/576 (23%), Positives = 243/576 (42%), Gaps = 61/576 (10%)
Query: 931 WSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLL 990
W ++ +G L ++ L ++ L + + + D L L+ ++
Sbjct: 10 WPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLL--VV 67
Query: 991 TVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSV 1050
+ +L R LV G R + + + +FFD +G +++R + D ++
Sbjct: 68 ALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTL 127
Query: 1051 LDLELAGRLGWCAFSIIQILGTIGVM--------SQVAWQVFVIFIPVTGICIWYQQYYI 1102
L + L + + +G + +M S V V ++ +P+
Sbjct: 128 LQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRR------ 181
Query: 1103 PTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNV- 1161
R+L+R ++ + A + E+L T+ AF ED R F
Sbjct: 182 --VRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHED------------AERSRFGGAV 227
Query: 1162 -SAMEWLCFRLN---LLSNFV--FAFSLVVLVT------LPEGIINPSIAGLAVTYGINL 1209
A E R+ LL+ V F +V V + G ++ G V Y + +
Sbjct: 228 EKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMV 287
Query: 1210 --NVLQASIIWN-ICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHN 1266
++ S +W + A ER+++ + P P G I F
Sbjct: 288 AGSIGTLSEVWGELQRAAGAA---ERLIELLQAEPDIKAPAHPKTLPV--PLRGEIEFEQ 342
Query: 1267 LQIRYAEHLPS-VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNV 1325
+ Y L ++ T + V +VG +G+GKSTL Q + R +P G I++D V
Sbjct: 343 VNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGV 402
Query: 1326 DITKIGLHDLRSRLGIIPQDPTLFDGTVR-----GNLDPLVQYSDKQVWEALDKCQLGDL 1380
D+ ++ +LR+R+ ++PQDP LF +V G D +D++V A +
Sbjct: 403 DLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDA----TDEEVEAAARAAHAHEF 458
Query: 1381 VRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKI 1440
+ A E D+ + E G S GQRQ + R +LK + IL+LDEAT+++D+ ++ ++Q+
Sbjct: 459 ISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQA 518
Query: 1441 ISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAE 1476
+ K RT + IAHR+ TV+ +D ++V+ GRI
Sbjct: 519 LETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVA 554
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 1e-39
Identities = 82/259 (31%), Positives = 135/259 (52%), Gaps = 15/259 (5%)
Query: 1251 RPPSNWPDV----GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLI 1306
R P D+ G + F ++ Y V +++S + V +VG TG+GKSTLI
Sbjct: 320 RDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGV-EDVSFEAKPGQTVAIVGPTGAGKSTLI 378
Query: 1307 QAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL-----DPLV 1361
+ R+ +P G I+ID DI + LR + ++ QD LF+ ++ N+ D
Sbjct: 379 NLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDA-- 436
Query: 1362 QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILV 1421
+D+++ A ++ Q D + K + D+ V E G S G+RQ + R LLK IL+
Sbjct: 437 --TDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILI 494
Query: 1422 LDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPT 1481
LDEAT+++D T+ ++ + + K RT IAHR+ TV ++D +LV +GR+ E S
Sbjct: 495 LDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFD 554
Query: 1482 KLLEREDSFFSQLIKEYSM 1500
+L+ R F+ L++ M
Sbjct: 555 ELVAR-GGRFAALLRAQGM 572
|
Length = 588 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 2e-39
Identities = 78/220 (35%), Positives = 114/220 (51%), Gaps = 22/220 (10%)
Query: 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT 690
+E N FS+ P P LD + L ++ G KVAI G VGSGKS+LL + G + +G+
Sbjct: 2 RIEFRNVSFSY-PNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 691 VKISGTKA-------------YVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVK 737
V + GT YVPQ + G +R+NI G D + A +
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLAD---DERILRAAELA 117
Query: 738 DFELFAS----GDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGT 793
F + G +IGERG +SGGQ+Q + +ARA+ D I LLD+P SA+D
Sbjct: 118 GVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMD-MNSE 176
Query: 794 QLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRI 833
+ K+ L +L DK+++ +TH+ L D I+VM++GRI
Sbjct: 177 ERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 2e-39
Identities = 83/237 (35%), Positives = 133/237 (56%), Gaps = 3/237 (1%)
Query: 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
G I F N+ Y L+NI+ P K V +VGR+GSGKST+ + R + G
Sbjct: 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399
Query: 1320 IIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLV--QYSDKQVWEALDKCQL 1377
I++D D+ L LR+++ ++ Q+ LF+ T+ N+ QYS +Q+ EA
Sbjct: 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYA 459
Query: 1378 GDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVI 1437
D + + LD+ + ENG S GQRQ + R LL+ S IL+LDEAT+++D+ ++ I
Sbjct: 460 MDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 1438 QKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQL 1494
Q + + K+RT + IAHR+ T+ +D +LV+ DG I E + +LL + + ++QL
Sbjct: 520 QAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ-NGVYAQL 575
|
Length = 582 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 7e-39
Identities = 125/543 (23%), Positives = 233/543 (42%), Gaps = 58/543 (10%)
Query: 982 IVLLVYTLLTVGSSL--CVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGR 1039
+ + + LL + LR + + + +A+ L + R P+ FF G
Sbjct: 198 LGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSAR-----FLWHILRLPVRFFAQRHAGD 252
Query: 1040 ILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQ 1099
I +R + V + L+G+L A + ++ +M + +I I I + Q
Sbjct: 253 IASRVQLNDQVAEF-LSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQ 311
Query: 1100 YYIPTARELARLAEIQRAPILHHFAESLAGAA---TIHAFDQED----RFTNANLSLIDN 1152
+ R A Q A L +++G T+ A E R+ L++
Sbjct: 312 -LVSRRRVDANRRLQQDAGKLT--GVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNA 368
Query: 1153 HSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLP-----EGIINPSIAGLAVTYGI 1207
+ L L +L + + + +++ + EG +I L +
Sbjct: 369 QQE--------LGVLTQILGVLPTLLTSLNSALILVVGGLRVMEG--QLTIGMLVAFQSL 418
Query: 1208 NLNVLQ-----ASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSN----WPD 1258
+ L+ + E + ++ +L+ PL+ EE P +
Sbjct: 419 MSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNP----VDPLLEEEEAPAAGSEPSPRL 474
Query: 1259 VGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMG 1318
G + N+ Y+ P +++N S T ++V +VG +GSGKST+ + + + +P G
Sbjct: 475 SGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534
Query: 1319 SIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL---DPLVQYSDKQVWEALDKC 1375
I+ D + +I L + + ++ QD LF+GTVR NL DP + D + A
Sbjct: 535 EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTI--PDADLVRACKDA 592
Query: 1376 QLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG 1435
+ D++ ++ D+ +AE G N S GQRQ + R L++ SIL+LDEAT+++D T
Sbjct: 593 AIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPET-- 650
Query: 1436 VIQKIISQEFKDR--TVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQ 1493
+KII + R T + +AHR+ T+ D D ++VL G++ + + +L +++
Sbjct: 651 --EKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVG-GAYAR 707
Query: 1494 LIK 1496
LI+
Sbjct: 708 LIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 1e-38
Identities = 101/306 (33%), Positives = 155/306 (50%), Gaps = 39/306 (12%)
Query: 559 ACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRD 618
AC++L +GR L+ P+ L LL+ Q K + + +Q + +
Sbjct: 406 ACVML-----SGRALA----------PLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450
Query: 619 AVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLS 678
++ + R + E+E N F++ P +P LD + L ++ G KVAI G +GSGKS+LL
Sbjct: 451 GTRFLHRPRLQGEIEFRNVSFAY-PGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLK 509
Query: 679 CILGEIQKMAGTVKISGTKA-------------YVPQSPWILTGNIRENILFGNQY--DS 723
+LG Q G+V + G YVPQ P + G +R+NI G Y D
Sbjct: 510 LLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDE 569
Query: 724 CKYDRTVEACAL--VKDF-ELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLL 780
+ A L V +F G +IGERG ++SGGQ+Q + +ARA+ +D I LL
Sbjct: 570 ----EILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLL 625
Query: 781 DDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFE 840
D+P SA+D + + FKD L L K+++ VTH+ L D I+VM+NGRI G +
Sbjct: 626 DEPTSAMD-NRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKD 684
Query: 841 ELLKQN 846
++L+
Sbjct: 685 QVLEAL 690
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 151 bits (382), Expect = 8e-38
Identities = 131/567 (23%), Positives = 250/567 (44%), Gaps = 74/567 (13%)
Query: 323 AVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQ------RQW 376
++ AAT L+ ++ + RS+ + + L +G ++ I W
Sbjct: 23 MILVAATESTLAALLKPLLDDGFGGRDRSVL--WWVPLVVIGLAVLRGICSFVSTYLLSW 80
Query: 377 IFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYM 436
+ + ++ +R + L L L +G +++ ++ D ++++ +
Sbjct: 81 V--SNKVVRDIRVRMFEKL----LGLPVSFFDRQPTGTLLSRITFDSEQVAS---AATDA 131
Query: 437 FMLPVQ-----ISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQKRFQ---SKIMD 488
F++ V+ I L I +L + L + + + I + R+ KR + +I +
Sbjct: 132 FIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLS----ILMRRVSKRLRRISKEIQN 187
Query: 489 AKDNRMRATSEVLKNMKTLKL---QAWDT-RFLQKLESLRQVECIWLWKSLRLSATSAFI 544
+ E L+ + +KL QA++T RF R+ ++++++ +
Sbjct: 188 SMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRR-------LAMKMTSAGSI- 239
Query: 545 FWGSP--TFISVVTFGACMLLGI------QLTAGRVLSALATFRMLQDPIFNLPDLLSNI 596
SP I+ + + + + LTAG + + L P+ +L ++ + +
Sbjct: 240 --SSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPM 297
Query: 597 AQGKVSADRIAAYL-QEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQL 655
+G +A+ + L E R+ +VE N F + P P LD I L
Sbjct: 298 QRGLAAAESLFTLLDSPPEKDTGTR---AIERARGDVEFRNVTFRY-PGRDRPALDSISL 353
Query: 656 KVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-------------AYVPQ 702
++ G VA+ G GSGKS+L++ I + +G + + G A V Q
Sbjct: 354 VIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQ 413
Query: 703 SPWILTGNIRENILFG--NQYDSCKYDRTVEACALVKDF-ELFASGDLTEIGERGINMSG 759
+ I NI +G Q D + +R + A A +DF + G T IGE G+ +SG
Sbjct: 414 DVVLFNDTIANNIAYGRTEQADRAEIERALAA-AYAQDFVDKLPLGLDTPIGENGVLLSG 472
Query: 760 GQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFL 819
GQ+QR+ IARA+ +DA I +LD+ SA+D + +L + L +++ ++ L + H++ +
Sbjct: 473 GQRQRLAIARALLKDAPILILDEATSALDNES-ERLVQAALERLMQGRTTLVIAHRLSTI 531
Query: 820 PAADIILVMENGRIAQAGRFEELLKQN 846
AD I+VM++GRI + G ELL +N
Sbjct: 532 EKADRIVVMDDGRIVERGTHNELLARN 558
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 151 bits (382), Expect = 8e-38
Identities = 82/253 (32%), Positives = 137/253 (54%), Gaps = 6/253 (2%)
Query: 1247 TEECRPPSNWPD----VGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGK 1302
+ P++ P+ G + F ++ +A V ++S + V +VG TG+GK
Sbjct: 316 VFQREEPADAPELPNVKGAVEFRHITFEFANSSQGV-FDVSFEAKAGQTVAIVGPTGAGK 374
Query: 1303 STLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLD-PLV 1361
+TLI + R+ +PT+G I+ID +DI + LR + + QD LF+ ++R N+
Sbjct: 375 TTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE 434
Query: 1362 QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILV 1421
+D++V+EA D + + D+ V E G S G+RQ + R +LK + ILV
Sbjct: 435 GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILV 494
Query: 1422 LDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPT 1481
LDEAT+++D T+ ++ I K+RT IAHR+ TV ++DLVL L GR+ E S
Sbjct: 495 LDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554
Query: 1482 KLLEREDSFFSQL 1494
+L++++ F+ L
Sbjct: 555 ELIQKDGRFYKLL 567
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 1e-37
Identities = 84/270 (31%), Positives = 140/270 (51%), Gaps = 10/270 (3%)
Query: 1228 ISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFP 1287
I++ER+ N P+E P G I+F N++ RYA P VL N++
Sbjct: 426 IALERLGDILNSPTEPRSAGLAALPELR----GAITFENIRFRYAPDSPEVLSNLNLDIK 481
Query: 1288 GRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPT 1347
+ +G+VG +GSGKSTL + + R+ P G +++D VD+ LR ++G++ Q+
Sbjct: 482 PGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENV 541
Query: 1348 LFDGTVRGNL---DPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQR 1404
LF ++R N+ +P + V A D + + ++ V E G N S GQR
Sbjct: 542 LFSRSIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQR 599
Query: 1405 QLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSD 1464
Q + R L+ IL+ DEAT+++D ++ +I + + + + RTV+ IAHR+ TV D
Sbjct: 600 QRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACD 659
Query: 1465 LVLVLSDGRIAEYDSPTKLLEREDSFFSQL 1494
++VL G+IAE +LL +++L
Sbjct: 660 RIIVLEKGQIAESGRHEELL-ALQGLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 2e-37
Identities = 123/532 (23%), Positives = 214/532 (40%), Gaps = 76/532 (14%)
Query: 357 LLALAFLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEII 416
LA+ A+ VE + F R+ +AL L+ K LS + SG+++
Sbjct: 66 GLAILRTAARYVERLVSHDATF-------RVLSALRVRLFEKLEPLSPALLLRYRSGDLL 118
Query: 417 NYMSVDVQRISDFIFYSNYM-FMLPVQISLAIYILRT------NLGLGSLAALAATLTVM 469
N + DV + + Y+ + P ++L + + T ++ L L L L ++
Sbjct: 119 NRLVADVDALDNL-----YLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLL 173
Query: 470 TCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECI 529
R ++F + + + ++ ++ L + + + LE E
Sbjct: 174 IIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE---ATEAS 230
Query: 530 WL---WKSLRLSATSAFIFWGSPTFISVVTFGACMLLGIQLTAGR------------VLS 574
WL K R + S I + + G + + Q+ AG + +
Sbjct: 231 WLKAQRKQARFTGLSDAILLLIAGLLVI---GLLLWMAAQVGAGALAQPGAALALLVIFA 287
Query: 575 ALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEV 634
AL F L P ++ Q SA R+ L + E E+
Sbjct: 288 ALEAFEPL------APGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRN 341
Query: 635 VNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKIS 694
V+ + P + L L + +G KVAI G GSGKS+LL + G G++ ++
Sbjct: 342 VSFTY---PGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLN 398
Query: 695 GTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACA------- 734
G + + + Q + +G +R+N+ N D + E
Sbjct: 399 GVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANP------DASDEELWAALQQVG 452
Query: 735 LVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQ 794
L K E G T +GE G +SGG+++R+ +ARA+ DA ++LLD+P +D T Q
Sbjct: 453 LEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQ 512
Query: 795 LFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846
+ L + K++L VTH++ L D I+V++NG+I + G ELL N
Sbjct: 513 VL-ALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANN 563
|
Length = 573 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 6e-37
Identities = 73/231 (31%), Positives = 116/231 (50%), Gaps = 21/231 (9%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
+E N F+++P P L + + G KVAI G GSGKS++L + +G++
Sbjct: 1 IEFENVTFAYDPGR--PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 692 KISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEAC--ALV 736
I G VPQ + I NI +G + +EA A +
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGR--PDATDEEVIEAAKAAQI 116
Query: 737 KDF-ELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQL 795
D F G T +GERG+ +SGG+KQR+ IARA+ ++ I LLD+ SA+D HT ++
Sbjct: 117 HDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREI 176
Query: 796 FKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846
L + K ++ + + H++ + AD I+V+++GRI + G EELL +
Sbjct: 177 QA-ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKG 226
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 1e-36
Identities = 138/495 (27%), Positives = 227/495 (45%), Gaps = 45/495 (9%)
Query: 383 LGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMFM--LP 440
LG R+ A + ++ + LS + SGE+++ ++ D + I S M +
Sbjct: 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNAL 144
Query: 441 VQISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATS-- 498
+ I I + T+ L SL LA L ++ PI +R + +++D R+
Sbjct: 145 MCIGGLIMMFITSPKLTSLVLLAVPLVLL----PILLFGRRVRKLSRESQD-RIADAGSY 199
Query: 499 --EVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSA----TSAFIFWGSPTFI 552
E L ++T+ QA+ ++ VE + R+ T+ I +
Sbjct: 200 AGETLGAIRTV--QAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIV 257
Query: 553 SVVTFGACMLLGIQLTAGRVLSALATFR-MLQDPIFNLPDLLSNIAQGKVSADRIAAYLQ 611
V+ GA ++ +++AG L + M+ I L ++ + + +A+R+ LQ
Sbjct: 258 GVLWVGAHDVIAGKMSAGT-LGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQ 316
Query: 612 -EDEIQRDAVEYVP--KGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGT 668
E +I+ A R E E E VN + P+ P LDG+ L V+ G VA+ G
Sbjct: 317 AEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQ--PALDGLNLTVRPGETVALVGP 374
Query: 669 VGSGKSSLLSCILGEIQKMAGTVKISGTK-------------AYVPQSPWILTGNIRENI 715
G+GKS+L +L +G + + G A VPQ P + ++ ENI
Sbjct: 375 SGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENI 434
Query: 716 LFGNQYDSCKYDRTVEACALVKDFELFAS----GDLTEIGERGINMSGGQKQRIQIARAV 771
+G + D VEA A F S G T +GERG+ +SGGQ+QRI IARA+
Sbjct: 435 RYGRPDAT---DEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI 491
Query: 772 YQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENG 831
+DA I LLD+ SA+DA + QL + L ++K ++ L + H++ + AD I+VM+ G
Sbjct: 492 LKDAPILLLDEATSALDAES-EQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQG 550
Query: 832 RIAQAGRFEELLKQN 846
RI G EL+ +
Sbjct: 551 RIVAQGTHAELIAKG 565
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 2e-36
Identities = 155/605 (25%), Positives = 271/605 (44%), Gaps = 88/605 (14%)
Query: 293 VKEKEGSTNPSIYKAIFFFIRKKAAI-NASFA-----VINAATSY-----VGPYLINDFV 341
+KEKE S + K I R+K I N A +I+ A SY + Y+ + +
Sbjct: 137 IKEKENS----LLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMM 192
Query: 342 NFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRLRAAL----ISHLYR 397
L ++++ + A +++ I IF LG RL + I HL+
Sbjct: 193 GTLG-----------IISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFE 241
Query: 398 KGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNY-----MFMLPVQISLAIYILRT 452
+ S R +GEI++ + D I D + + M++L V + L +
Sbjct: 242 LPMSFFSTRR----TGEIVSRFT-DASSIIDALASTILSLFLDMWIL-VIVGLFLVRQNM 295
Query: 453 NLGLGSLAALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLK-LQA 511
L L SL ++ ++ I R + M A + E L ++T+K L +
Sbjct: 296 LLFLLSLLSIPVYAVII---ILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTS 352
Query: 512 WDTRFLQKLESLRQVECIWLWKSLRLSATSAF---IFWGSPTFISVVT--FGACMLLGIQ 566
R+ K++S +L KS + I + ++VV GA +++ +
Sbjct: 353 EAERY-SKIDSEFGD---YLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGK 408
Query: 567 LTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRI-AAYLQEDEIQRDAVEYVPK 625
LT G++++ A P+ N+ +L + +V+ +R+ YL + E
Sbjct: 409 LTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFIN-------- 460
Query: 626 GRSEFEVEVVNG-----KFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCI 680
+ E+ +NG S++ S L I L +K K I G GSGKS+L +
Sbjct: 461 KKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLL 520
Query: 681 LGEIQKMAGTVKISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYD 727
+G Q +G + ++G Y+PQ P+I +G+I EN+L G + ++ D
Sbjct: 521 VGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAK-ENVSQD 579
Query: 728 RTVEACALV---KDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPF 784
AC + D E G TE+ E G ++SGGQKQRI +ARA+ D+ + +LD+
Sbjct: 580 EIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDEST 639
Query: 785 SAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLK 844
S +D T ++ + L L+DK++++V H++ +D I+V+++G+I + G +ELL
Sbjct: 640 SNLDTITEKKIVNNLLN--LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697
Query: 845 QNIGF 849
+N GF
Sbjct: 698 RN-GF 701
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 8e-36
Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 16/229 (6%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
VE N F + + P L I L + G VA+ G GSGKS+L++ I +G +
Sbjct: 1 VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 692 KISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKD 738
I G V Q ++ + ENI +G + + A +
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 739 F-ELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFK 797
F G T IGERG+ +SGGQ+QRI IARA+ +D I +LD+ SA+D + +L +
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES-ERLVQ 178
Query: 798 DCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846
L ++K+++ + H++ + AD I+V+E+G+I + G EELL Q
Sbjct: 179 AALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 4e-35
Identities = 77/242 (31%), Positives = 121/242 (50%), Gaps = 27/242 (11%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
+E N F + P L G+ L + G VA+ G+ G GKS+++S + +G +
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 692 KISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVE----AC- 733
+ G V Q P + G I ENI +G K D T E A
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYG------KPDATDEEVEEAAK 114
Query: 734 -ALVKDF-ELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHT 791
A + DF G T +GERG +SGGQKQRI IARA+ ++ I LLD+ SA+DA +
Sbjct: 115 KANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174
Query: 792 GTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEV 851
+L ++ L +K ++ + + H++ + AD+I V++NG++ + G +EL+ Q +
Sbjct: 175 -EKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAK 233
Query: 852 LV 853
LV
Sbjct: 234 LV 235
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (356), Expect = 1e-34
Identities = 99/302 (32%), Positives = 156/302 (51%), Gaps = 18/302 (5%)
Query: 558 GACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQR 617
G+ M++ LT G++ S + ++ P+ L + + + +G + RI A L E + +
Sbjct: 242 GSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVK 301
Query: 618 DAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLL 677
D E VP+GR E +V + F++ P++ P L+ + +K G + ICG GSGKS+LL
Sbjct: 302 DGSEPVPEGRGELDVNIRQ--FTY-PQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLL 358
Query: 678 SCILGEIQKMAGTVKISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSC 724
S I G ++ A V Q+P++ + + NI G +
Sbjct: 359 SLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQ 418
Query: 725 KYDRTVEACALVKDFEL-FASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDP 783
+ V A V D L G TE+GERG+ +SGGQKQRI IARA+ +A+I +LDD
Sbjct: 419 QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDA 478
Query: 784 FSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELL 843
SAVD T Q+ + L + ++V+ H++ L A ILVM++G IAQ G ++L
Sbjct: 479 LSAVDGRTEHQILHN-LRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLA 537
Query: 844 KQ 845
+Q
Sbjct: 538 QQ 539
|
Length = 569 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 139 bits (354), Expect = 3e-34
Identities = 83/284 (29%), Positives = 137/284 (48%), Gaps = 30/284 (10%)
Query: 597 AQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQL- 655
AQ +A+ + +L+ E +E + E SP DG L
Sbjct: 315 AQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAED------LEILSP--DGKTLA 366
Query: 656 -----KVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------- 697
+ G ++A+ G G+GK+SLL+ +LG + G++KI+G +
Sbjct: 367 GPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHL 425
Query: 698 AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDF-ELFASGDLTEIGERGIN 756
++V Q+P + G +R+N+L GN S + + A V +F L G T IG++
Sbjct: 426 SWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQV 816
+S GQ QR+ +ARA+ Q + LLD+P +++DAH+ QL L + ++ L VTHQ+
Sbjct: 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS-EQLVMQALNAASRRQTTLMVTHQL 544
Query: 817 EFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGAHSQAL 860
E L D I VM++G+I Q G + EL + F L+ + +
Sbjct: 545 EDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQEEI 588
|
Length = 588 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 4e-34
Identities = 61/214 (28%), Positives = 97/214 (45%), Gaps = 42/214 (19%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ N+ RY P VL+N+S + + + ++G +GSGKSTL + I ++ PT G +
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLV 1381
+D DI++ ++L +G +PQD LF G++ N+
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------------ 96
Query: 1382 RAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKII 1441
S GQRQ L R L ILVLDE + +D + + + I
Sbjct: 97 -----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI 139
Query: 1442 SQ-EFKDRTVVTIAHRIHTVIDSDLVLVLSDGRI 1474
+ + T + IAHR T+ +D +LVL DGR+
Sbjct: 140 AALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 6e-34
Identities = 77/242 (31%), Positives = 124/242 (51%), Gaps = 17/242 (7%)
Query: 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIV----EP 1315
G I + RY P +L ++S + V +VG +GSGKSTL R++ P
Sbjct: 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTL----LRLLLGFETP 505
Query: 1316 TMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKC 1375
GS+ D D+ + + +R +LG++ Q+ L G++ N+ + + WEA
Sbjct: 506 ESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMA 565
Query: 1376 QLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG 1435
L + +RA + + ++E G S GQRQ + R L++K IL+ DEAT SA D
Sbjct: 566 GLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEAT----SALDN 621
Query: 1436 VIQKIISQEFKDRTVVT---IAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFS 1492
Q I+S+ +R VT IAHR+ T+ ++D + VL GR+ + + +L+ RE F+
Sbjct: 622 RTQAIVSESL-ERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMARE-GLFA 679
Query: 1493 QL 1494
QL
Sbjct: 680 QL 681
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 8e-34
Identities = 127/515 (24%), Positives = 240/515 (46%), Gaps = 44/515 (8%)
Query: 1001 RAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLG 1060
+ L+ + G R + + + + + PM+FF + TG I++R ++ S++D + L
Sbjct: 216 QIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSIIDALASTILS 275
Query: 1061 -WCAFSIIQILGTI-GVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAP 1118
+ I+ I+G + + + + ++ IPV + I + T +L A +Q
Sbjct: 276 LFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIIL---FKRTFNKLNHDA-MQANA 331
Query: 1119 ILHH-FAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSA---MEWLCFRLNLL 1174
+L+ E L G TI + E + S ++ F A + + L+
Sbjct: 332 VLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLI 391
Query: 1175 SNFVFAFSLVVLVTLPEGIINPSIAGLAVTY----GINLNVLQASIIWNICNAENKM--- 1227
N V ++ LV + G +T+ L L+ NI N + K+
Sbjct: 392 LNVVILWTGAYLV-----MRGKLTLGQLITFNALLSYFLTPLE-----NIINLQPKLQAA 441
Query: 1228 -ISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTF 1286
++ R+ + + SE + ++ R N + G I +++ Y +L +IS T
Sbjct: 442 RVANNRLNEVYLVDSE--FINKKKRTELNNLN-GDIVINDVSYSYGYGSN-ILSDISLTI 497
Query: 1287 PGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDP 1346
K +VG +GSGKSTL + + + G I+++ + I H LR + +PQ+P
Sbjct: 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEP 557
Query: 1347 TLFDGTVRGNLDPLVQ----YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVG 1402
+F G++ NL L+ S ++W A + ++ D + + ++E G + S G
Sbjct: 558 YIFSGSILENL--LLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGG 615
Query: 1403 QRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQ--EFKDRTVVTIAHRIHTV 1460
Q+Q L R LL S +L+LDE+T+++D+ T+ +KI++ +D+T++ +AHR+
Sbjct: 616 QKQRIALARALLTDSKVLILDESTSNLDTITE---KKIVNNLLNLQDKTIIFVAHRLSVA 672
Query: 1461 IDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
SD ++VL G+I E S +LL+R + F++ LI
Sbjct: 673 KQSDKIIVLDHGKIIEQGSHDELLDR-NGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 1e-33
Identities = 67/217 (30%), Positives = 117/217 (53%), Gaps = 2/217 (0%)
Query: 1260 GTISFHNLQIRYAEHLPS-VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMG 1318
G + F N+ Y + VL+++S T + +VG +GSGKST++ + +P G
Sbjct: 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG 69
Query: 1319 SIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLD-PLVQYSDKQVWEALDKCQL 1377
+++D I++ L S++ ++ Q+P LF +++ N+ L S + V EA K
Sbjct: 70 QVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHA 129
Query: 1378 GDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVI 1437
+ D+ V E G S GQ+Q + R L++ +L+LDEAT+++D+ ++ +
Sbjct: 130 HSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV 189
Query: 1438 QKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRI 1474
Q+ + + RTV+ IAHR+ TV +D +LVL GRI
Sbjct: 190 QQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 3e-33
Identities = 82/287 (28%), Positives = 129/287 (44%), Gaps = 27/287 (9%)
Query: 563 LGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNI-------AQGKVSADRIAAYLQEDEI 615
+G +L AG + A F +L P F LP L + A G +A+ + A L
Sbjct: 249 IGFRLLAGDLDLATGLFVLLLAPEFYLP--LRQLGAQYHARADGVAAAEALFAVLDAAPR 306
Query: 616 QRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSS 675
V + +E ++ P L + V G +VA+ G G+GKS+
Sbjct: 307 PLAGKAPVTAAPAP-SLEFSGVSVAY--PGRRPALRPVSFTVPPGERVALVGPSGAGKST 363
Query: 676 LLSCILGEIQKMAGTVKISGTK-------------AYVPQSPWILTGNIRENILFGNQY- 721
LL+ +LG + G++ ++G A+VPQ P++ G I ENI
Sbjct: 364 LLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDA 423
Query: 722 DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLD 781
+ +E L + G T IGE G +SGGQ QR+ +ARA +DA + LLD
Sbjct: 424 SDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLD 483
Query: 782 DPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVM 828
+P + +DA T + L + + ++VL VTH++ AD I+V+
Sbjct: 484 EPTAHLDAET-EAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 4e-33
Identities = 95/331 (28%), Positives = 145/331 (43%), Gaps = 37/331 (11%)
Query: 533 KSLRLSATSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDL 592
K R+ S + G+ I M+ G L GR L+ PI
Sbjct: 232 KYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILV-GRALA----------PIDGAIGG 280
Query: 593 LSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDG 652
+ + + R+ L + A+ +P+ VE V P PTL G
Sbjct: 281 WKQFSGARQAYKRLNELLANYPSRDPAMP-LPEPEGHLSVENVTIV---PPGGKKPTLRG 336
Query: 653 IQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG-------------TKAY 699
I ++ G +AI G GSGKS+L I+G +G+V++ G Y
Sbjct: 337 ISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGY 396
Query: 700 VPQSPWILTGNIRENIL-FGNQYDSCKYDRTVEACALVKDFEL---FASGDLTEIGERGI 755
+PQ + G + ENI FG D ++ +EA L EL G T IG G
Sbjct: 397 LPQDVELFPGTVAENIARFGENADP---EKIIEAAKLAGVHELILRLPDGYDTVIGPGGA 453
Query: 756 NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK-SVLYVTH 814
+SGGQ+QRI +ARA+Y D + +LD+P S +D G Q + + + +V+ +TH
Sbjct: 454 TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDE-EGEQALANAIKALKARGITVVVITH 512
Query: 815 QVEFLPAADIILVMENGRIAQAGRFEELLKQ 845
+ L D ILV+++GRIA+ G +E+L +
Sbjct: 513 RPSLLGCVDKILVLQDGRIARFGERDEVLAK 543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 1e-32
Identities = 67/240 (27%), Positives = 115/240 (47%), Gaps = 31/240 (12%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PT 1316
I +L + Y + LK+IS P + ++G +G GKSTL++ + R+ + P
Sbjct: 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 1317 MGSIIIDNVDITKIGLHD--LRSRLGIIPQDPTLFDGTVRGNLD---PLVQYSDKQ---- 1367
G +++D DI + + LR R+G++ Q P F G++ N+ L K+
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE 118
Query: 1368 -VWEALDKCQLGDLV--RAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDE 1424
V EAL K L D V R L S GQ+Q CL R L + +L+LDE
Sbjct: 119 RVEEALRKAALWDEVKDRLHALGL-----------SGGQQQRLCLARALANEPEVLLLDE 167
Query: 1425 ATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKL 1483
T+++D + I+++I++ K+ T+V + H + +D L +GR+ E+ ++
Sbjct: 168 PTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 1e-32
Identities = 68/239 (28%), Positives = 128/239 (53%), Gaps = 6/239 (2%)
Query: 1257 PDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPT 1316
D +++ +N+ Y + VLK +S +KV ++GRTG GKSTL+Q + R +P
Sbjct: 334 ADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ 393
Query: 1317 MGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL---DPLVQYSDKQVWEALD 1373
G I+++ I LR + ++ Q LF T+R NL P SD+ + E L
Sbjct: 394 QGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP--NASDEALIEVLQ 451
Query: 1374 KCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT 1433
+ L L+ ++ L++ + E G S G+++ + R LL + +L+LDE T +D+ T
Sbjct: 452 QVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAET 510
Query: 1434 DGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFS 1492
+ I +++++ +++TV+ I HR+ + D + V+ +G+I E + +LL ++ ++
Sbjct: 511 ERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQ 569
|
Length = 574 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-32
Identities = 65/220 (29%), Positives = 111/220 (50%), Gaps = 15/220 (6%)
Query: 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT 690
++E N + P P L I +K G KV I G GSGKSSLL + ++ +G+
Sbjct: 2 DIEFKNVSLRYRPNLP-PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 691 VKISG---TK----------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVK 737
+ I G +K + +PQ P + +G IR N+ +Y + + +E L +
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 738 DFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFK 797
E G T + E G N+S GQ+Q + +ARA+ + + I +LD+ ++VD T L +
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET-DALIQ 179
Query: 798 DCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAG 837
+ KD +VL + H+++ + +D ILV++ GR+ +
Sbjct: 180 KTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFD 219
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 3e-32
Identities = 132/503 (26%), Positives = 226/503 (44%), Gaps = 75/503 (14%)
Query: 385 LRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMFMLPVQIS 444
LR+R L L R+ L + +GE+ + +S D Q +S +S
Sbjct: 234 LRIREDLFRSLLRQDLGFF----DENKTGELTSRLSSDTQTMSR-------------SLS 276
Query: 445 LAIYILRTNL--GLGSLA---ALAATLTVMT-CNIPIT-----RIQKRFQS---KIMD-- 488
L + +L NL LG L L+ LT++T N+P+ KR+Q ++ +
Sbjct: 277 LNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAV 336
Query: 489 AKDNRMRATSEVLKNMKTLKLQAWD----TRFLQKLESLRQVECIWLWKSLRLSATSAFI 544
AK N++ E L M+T++ A + +RF + LE Q+ K R + A
Sbjct: 337 AKANQV--AEEALSGMRTVRSFAAEEGEASRFKEALEETLQL-----NK--RKALAYAGY 387
Query: 545 FW-----GSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQG 599
W G + V+ +G ++L ++++G ++S L L + + L + S + Q
Sbjct: 388 LWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQA 447
Query: 600 KVSADRIAAYLQEDEIQRDAVEYVP---KGRSEFEVEVVNGKFSWNPESSSPTLDGIQLK 656
+++++ YL P +G EF+ + FS+ P L G+
Sbjct: 448 VGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQ----DVSFSYPNRPDVPVLKGLTFT 503
Query: 657 VKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-------------AYVPQS 703
+ G VA+ G GSGKS++ + + Q G V + G A V Q
Sbjct: 504 LHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQE 563
Query: 704 PWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFEL-FASGDLTEIGERGINMSGGQK 762
P + +G++RENI +G + A DF + F +G TE+GE+G +SGGQK
Sbjct: 564 PVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQK 623
Query: 763 QRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAA 822
QRI IARA+ + + +LD+ SA+DA L + ++VL + H++ + A
Sbjct: 624 QRIAIARALVRKPRVLILDEATSALDAECEQLLQES---RSRASRTVLLIAHRLSTVERA 680
Query: 823 DIILVMENGRIAQAGRFEELLKQ 845
D ILV++ G + + G ++L++
Sbjct: 681 DQILVLKKGSVVEMGTHKQLMED 703
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 3e-32
Identities = 58/222 (26%), Positives = 119/222 (53%), Gaps = 13/222 (5%)
Query: 1279 LKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSR 1338
++ T P +++ +VG +G+GK++L+ A+ + P GS+ I+ +++ ++ R
Sbjct: 366 AGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKH 424
Query: 1339 LGIIPQDPTLFDGTVRGNL---DPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAEN 1395
L + Q+P L GT+R N+ +P SD+Q+ +AL+ + + + + LD+ + +
Sbjct: 425 LSWVGQNPQLPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482
Query: 1396 GENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAH 1455
SVGQ Q L R LL+ +L+LDE TAS+D+ ++ ++ + ++ + +T + + H
Sbjct: 483 AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTH 542
Query: 1456 RIHTVIDSDLVLVLSDGRIAE---YDSPTKLLEREDSFFSQL 1494
++ + D + V+ DG+I + Y L + F+ L
Sbjct: 543 QLEDLAQWDQIWVMQDGQIVQQGDYAE----LSQAGGLFATL 580
|
Length = 588 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 3e-32
Identities = 71/232 (30%), Positives = 117/232 (50%), Gaps = 7/232 (3%)
Query: 1228 ISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFP 1287
+ ERI++ + + + T+ +L Y P VL +S P
Sbjct: 302 AAAERIVEVLDAAGPVAEGSAP-AAGAVGLGKPTLELRDLSAGYPGA-PPVLDGVSLDLP 359
Query: 1288 GRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPT 1347
++V ++G +GSGKSTL+ + +++P G + +D V ++ + ++R R+ + QD
Sbjct: 360 PGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAH 419
Query: 1348 LFDGTVRGNL---DPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQR 1404
LFD TVR NL P +D+++W AL++ L D +RA + LD+ + E G S G+R
Sbjct: 420 LFDTTVRENLRLARPDA--TDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGER 477
Query: 1405 QLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHR 1456
Q L R LL + IL+LDE T +D+ T + + + RTVV I H
Sbjct: 478 QRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 2e-31
Identities = 84/290 (28%), Positives = 147/290 (50%), Gaps = 3/290 (1%)
Query: 334 PYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRLRAALIS 393
P L+ FV FL D + + G L L ++++++ ++ + + + GL+ R+AL +
Sbjct: 264 PVLLKYFVKFL-DADNATWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNA 322
Query: 394 HLYRKGLHLSSQSRQ--SHTSGEIINYMSVDVQRISDFIFYSNYMFMLPVQISLAIYILR 451
++ K +SS+S +G IIN MS DV+RI+ F+ Y Y++ P+ + L+I +L
Sbjct: 323 LIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSILLLS 382
Query: 452 TNLGLGSLAALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQA 511
+G +L A+A L + N I + Q + KI A D R++AT+E ++ K A
Sbjct: 383 RLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMA 442
Query: 512 WDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWGSPTFISVVTFGACMLLGIQLTAGR 571
W+ F+ +E R E +L ++F+ +PT + V F LLG +LT
Sbjct: 443 WEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEV 502
Query: 572 VLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVE 621
V +A +L+ P F +P + + + Q VS RI+ +L+ D V+
Sbjct: 503 VFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQ 552
|
Length = 1560 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 3e-31
Identities = 61/248 (24%), Positives = 116/248 (46%), Gaps = 24/248 (9%)
Query: 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSI 1320
I NL +Y L +S + G++G G+GK+TL++ + +++PT G I
Sbjct: 4 VIEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 1321 IIDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLD-------PLVQYSDKQVWEAL 1372
++ D+ K +R R+G +PQ+P+L+ TVR NL+ + +++++ E L
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 1373 DKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSA 1432
+ L D K L S G +Q + LL +L+LDE T+ +D
Sbjct: 122 ELFGLEDKANKKVRTL-----------SGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 1433 TDGVIQKIISQEFKD--RTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDS 1489
+ I +++ + K+ T++ H + + D V++L+DG+I +P +L E+
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230
Query: 1490 FFSQLIKE 1497
++
Sbjct: 231 KGVIELEP 238
|
Length = 293 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 1e-30
Identities = 88/307 (28%), Positives = 142/307 (46%), Gaps = 28/307 (9%)
Query: 558 GACMLLGIQLTAGRVL-SALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQ 616
GA +++ ++T G ++ ++ + R L PI + S R+ L E
Sbjct: 264 GAWLVIKGEITPGMMIAGSILSGRALA-PIDLAIANWKQFVAARQSYKRLNELLAELPAA 322
Query: 617 RDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSL 676
+ + +P + VE + P P L GI ++ G + I G GSGKS+L
Sbjct: 323 AERMP-LPAPQGALSVERLTAA---PPGQKKPILKGISFALQAGEALGIIGPSGSGKSTL 378
Query: 677 LSCILGEIQKMAGTVKISGTK-------------AYVPQSPWILTGNIRENIL-FGNQYD 722
++G +G+V++ G Y+PQ + G I ENI FG + D
Sbjct: 379 ARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEAD 438
Query: 723 SCKYDRTVEACALVKDFEL---FASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYL 779
++ +EA L EL G T IGE G +SGGQ+QRI +ARA+Y D + +
Sbjct: 439 P---EKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVV 495
Query: 780 LDDPFSAVDAHTGTQLFKDCLMGILKDK-SVLYVTHQVEFLPAADIILVMENGRIAQAGR 838
LD+P S +D+ G ++ +V+ + H+ L + D ILV+++GRIA G
Sbjct: 496 LDEPNSNLDS-EGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGP 554
Query: 839 FEELLKQ 845
EE+L +
Sbjct: 555 REEVLAK 561
|
Length = 580 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 4e-30
Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 39/215 (18%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+S +N+ Y E VLKN+S +K+ ++GR+GSGKSTL+Q + ++P G I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLV 1381
+D V ++ + L S + ++ Q P LFD T+R NL
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 1382 RAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKII 1441
G +S G+RQ L R LL+ + I++LDE T +D T+ + +I
Sbjct: 96 --------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI 141
Query: 1442 SQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAE 1476
+ KD+T++ I H + + D +L L +G+I
Sbjct: 142 FEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 5e-30
Identities = 141/535 (26%), Positives = 238/535 (44%), Gaps = 63/535 (11%)
Query: 349 SRSLESGYLLALAFLGAKMVETIAQ--RQWIFG--ARQLGLRLRAALISHLYRKGLHLSS 404
R L + +LALA L + E R ++F ++ + L A L HL GL L
Sbjct: 172 HRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLL--GLPLGY 229
Query: 405 -QSRQSHTSGEIINYMSVDVQRISDFIFYSNYMFMLP---VQISLAIYI----LRTNLGL 456
+SR+ G+ + + ++++I +F+ S +L V + LA+ T + +
Sbjct: 230 FESRRV---GDTVARVR-ELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVI 285
Query: 457 GSLAALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRF 516
GSL A L+V I R++ +F+ A E + ++T+K A + +F
Sbjct: 286 GSLVCYAL-LSVFVGPILRKRVEDKFER---SAAATSF--LVESVTGIETIKATATEPQF 339
Query: 517 LQKLESLRQVECIWLWKSLRLS-----ATSAFIFWGSPTFISVVTFGACMLLGIQLTAGR 571
+ + + ++ S R++ A A TF ++ FGA +++G L+ G
Sbjct: 340 QNRWD---RQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPG- 395
Query: 572 VLSALATFRMLQ----DPIFNLPDLLSNIAQGKVSADRIAAYLQE-DEIQRDAVEYVP-- 624
L F ML P+ L L + Q ++ +R+ L E + + +P
Sbjct: 396 ---QLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPEL 452
Query: 625 KGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEI 684
+G FE N +F + P+S L + L +K G + I G GSGKS+L +
Sbjct: 453 RGAITFE----NIRFRYAPDSP-EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY 507
Query: 685 QKMAGTVKISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVE 731
G V + G V Q + + +IR+NI N ++
Sbjct: 508 TPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAA 567
Query: 732 ACALVKDF-ELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAH 790
A DF G TE+GE+G N+SGGQ+QRI IARA+ + I + D+ SA+D
Sbjct: 568 KLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYE 627
Query: 791 TGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845
+ L + I + ++V+ + H++ + A D I+V+E G+IA++GR EELL
Sbjct: 628 S-EALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL 681
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-29
Identities = 62/199 (31%), Positives = 97/199 (48%), Gaps = 28/199 (14%)
Query: 639 FSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKA 698
FS+ PE L + L++K+G K+A+ G GSGKS+LL + G+++ G + + G
Sbjct: 8 FSY-PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPV 66
Query: 699 YVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMS 758
L + I NQ LF + +G R S
Sbjct: 67 S------DLEKALSSLISVLNQ-----------------RPYLFDTTLRNNLGRR---FS 100
Query: 759 GGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEF 818
GG++QR+ +AR + QDA I LLD+P +D T QL + +LKDK+++++TH +
Sbjct: 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS-LIFEVLKDKTLIWITHHLTG 159
Query: 819 LPAADIILVMENGRIAQAG 837
+ D IL +ENG+I G
Sbjct: 160 IEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 1e-29
Identities = 52/268 (19%), Positives = 112/268 (41%), Gaps = 3/268 (1%)
Query: 322 FAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGAR 381
++ AT+ V P L+ F++ L D S LA+ + +++ + + +
Sbjct: 7 LLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQGSFYLGE 66
Query: 382 QLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMFMLPV 441
+LG R+R L L R+ L L +++ GE+ + ++ DV +I D + +F +
Sbjct: 67 RLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLFFQSL 126
Query: 442 QISLAIYILRTNLG-LGSLAALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEV 500
+ +I+ G +L LA ++ + + + ++ K A E
Sbjct: 127 ATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSVAEES 186
Query: 501 LKNMKTLKLQAWDTRFLQK-LESLRQVECIWLWKSLRLSATSAFIFWGSPT-FISVVTFG 558
L ++T+K + L++ ++L E + K++ + S + + FG
Sbjct: 187 LSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYALALWFG 246
Query: 559 ACMLLGIQLTAGRVLSALATFRMLQDPI 586
A +++ L+ G V + L+ L P+
Sbjct: 247 AYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 68/224 (30%), Positives = 104/224 (46%), Gaps = 37/224 (16%)
Query: 633 EVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVK 692
E+ N FS+ P+ + P LD I L +K+G V I G GSGKS+LL + G + +G V
Sbjct: 1 ELKNLSFSY-PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 693 ISGTK-------------AYVPQSP--WILTGNIRENILFG--NQYDSCKYDRTVEACAL 735
+ G V Q+P + E + FG N E
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLP-----EEEIEER 114
Query: 736 VKDFELFASGDLTEIGERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQ 794
V+ E L + +R +SGGQKQR+ IA + D DI LLD+P + +D +
Sbjct: 115 VE--EALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172
Query: 795 LFKDCLMGILKD-----KSVLYVTHQVEFLPA-ADIILVMENGR 832
L + +LK K+++ VTH ++ L AD ++V+E+G+
Sbjct: 173 LLE-----LLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 7e-28
Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 44/229 (19%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK--------AYVP 701
L+ I L V++G VAI G G GKS+LL I G + +G V + G YV
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVF 78
Query: 702 QS----PWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGIN- 756
Q PW LT + +N+ G + A EL L ++ +
Sbjct: 79 QEDALLPW-LT--VLDNVALGLELRGKSKAEA-RERAK----ELLELVGLAGFEDKYPHQ 130
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--KSVLYVTH 814
+SGG +QR+ IARA+ + LLD+PF A+DA T +L + L+ + ++ K+VL VTH
Sbjct: 131 LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDE-LLRLWEETRKTVLLVTH 189
Query: 815 QVE---FLPAADIILVMENG---------------RIAQAGRFEELLKQ 845
V+ +L AD ++V+ N RI F EL ++
Sbjct: 190 DVDEAVYL--ADRVVVLSNRPGRIGEELEIDLPRPRIRGDPEFLELREE 236
|
Length = 248 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 9e-28
Identities = 73/211 (34%), Positives = 103/211 (48%), Gaps = 41/211 (19%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK--------AYVP 701
L+ I L V+ G VA+ G G GKS+LL I G + +G V + G YV
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79
Query: 702 QS----PWILTGNIRENILFG----NQYDSCKYDRTVEACALV--KDFELFASGDLTEIG 751
Q PW LT + +N+ G + +R E LV FE L
Sbjct: 80 QQDALLPW-LT--VLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQL---- 132
Query: 752 ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--KSV 809
SGG +QR+ +ARA+ D D+ LLD+PFSA+DA T QL ++ L+ I ++ K+V
Sbjct: 133 ------SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL-QEELLDIWRETGKTV 185
Query: 810 LYVTHQVE---FLPAADIILVMEN--GRIAQ 835
L VTH ++ FL AD ++V+ GRI
Sbjct: 186 LLVTHDIDEAVFL--ADRVVVLSARPGRIVA 214
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 1e-27
Identities = 95/354 (26%), Positives = 159/354 (44%), Gaps = 41/354 (11%)
Query: 550 TFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAY 609
T ++++ GA ++ QL G V++ + +L I L D + A A
Sbjct: 253 TMLAILVLGAALVQKGQLRVGEVVAFVGFATLL---IGRL-DQVVAFINQVFMA---APK 305
Query: 610 LQE-----DEIQ--RDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMK 662
L+E D + RD + GR + VE + FS+ ++S ++ + + K G
Sbjct: 306 LEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSY--DNSRQGVEDVSFEAKPGQT 363
Query: 663 VAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-------------AYVPQSPWILTG 709
VAI G G+GKS+L++ + +G + I GT A V Q +
Sbjct: 364 VAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR 423
Query: 710 NIRENILFG--NQYDSCKYDRTVEACALVKDFELFASGDL-TEIGERGINMSGGQKQRIQ 766
+I +NI G + D A A DF T +GERG +SGG++QR+
Sbjct: 424 SIEDNIRVGRPDATDEEMRAAAERAQAH--DFIERKPDGYDTVVGERGRQLSGGERQRLA 481
Query: 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIIL 826
IARA+ +D I +LD+ SA+D T ++ K L ++K ++ + H++ + AD IL
Sbjct: 482 IARALLKDPPILILDEATSALDVETEAKV-KAALDELMKGRTTFIIAHRLSTVRNADRIL 540
Query: 827 VMENGRIAQAGRFEELLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPES 880
V +NGR+ ++G F+EL+ + F L+ A + E R +
Sbjct: 541 VFDNGRVVESGSFDELVARGGRFAALLRA------QGMLQEDERRKQPAAEGAN 588
|
Length = 588 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-27
Identities = 67/284 (23%), Positives = 124/284 (43%), Gaps = 34/284 (11%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
LDG+ +V+ G + G G+GK++LL + G ++ +G + + G
Sbjct: 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI 80
Query: 698 AYVPQSP---WILTGNIRENI-LFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGER 753
YVPQ P LT REN+ F Y K + L++ F L + ++
Sbjct: 81 GYVPQEPSLYPELTV--RENLEFFARLYGLSKEEAEERIEELLELFGL-----EDKANKK 133
Query: 754 GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--KSVLY 811
+SGG KQR+ IA A+ D ++ +LD+P S +D + + + L + K+ ++L
Sbjct: 134 VRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES-RREIWELLRELAKEGGVTILL 192
Query: 812 VTHQ---VEFLPAADIILVMENGRIAQAGRFEELLKQ--NIGFEVLVGAHSQALESVLTV 866
TH E L D ++++ +G+I G EEL ++ G L + E + +
Sbjct: 193 STHILEEAEEL--CDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGL 250
Query: 867 ETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEK 910
+ + L + ++ + + S ++ LE+T +
Sbjct: 251 KLVKGEEELAEILEAL-LEEGVKIESIEVKEPSLEDVFLELTGR 293
|
Length = 293 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 2e-27
Identities = 89/314 (28%), Positives = 136/314 (43%), Gaps = 64/314 (20%)
Query: 567 LTAGRVLSALATFRMLQDPI---FNLPDLLSNIAQGKVSADRIAAYL-QEDEIQRDAVEY 622
L A V +ALA F L P+ F ++ Q SA RI Q+ E+
Sbjct: 279 LIALFVFAALAAFEALM-PVAGAFQ------HLGQVIASARRINEITEQKPEVTFPTTST 331
Query: 623 VPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG 682
+ + V+ F++ P+ P L G+ L++K G KVA+ G G GKS+LL +
Sbjct: 332 AAADQVSLTLNNVS--FTY-PDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTR 388
Query: 683 EIQKMAGTVKISGT--KAY-----------VPQSPWILTGNIRENILFGNQYDSCKYDRT 729
G + ++G Y V Q + + +R+N+L
Sbjct: 389 AWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLL------------ 436
Query: 730 VEACALVKDFELFAS------GDLTE--------IGERGINMSGGQKQRIQIARAVYQDA 775
A D L L E +GE G +SGG+++R+ IARA+ DA
Sbjct: 437 --AAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDA 494
Query: 776 DIYLLDDPFSAVDAHTGTQ----LFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENG 831
+ LLD+P +DA T Q L + ++K+VL +TH++ L D I VM+NG
Sbjct: 495 PLLLLDEPTEGLDAETERQILELLAEHA-----QNKTVLMITHRLTGLEQFDRICVMDNG 549
Query: 832 RIAQAGRFEELLKQ 845
+I + G +ELL Q
Sbjct: 550 QIIEQGTHQELLAQ 563
|
Length = 574 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-27
Identities = 63/213 (29%), Positives = 94/213 (44%), Gaps = 58/213 (27%)
Query: 1263 SFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIII 1322
NL RY + L N+S T + V +VG GSGKSTL++AI +++PT G I+I
Sbjct: 1 EIENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 1323 DNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVR 1382
D DI K+ L +LR R+G +P QL
Sbjct: 59 DGKDIAKLPLEELRRRIGYVP--------------------------------QL----- 81
Query: 1383 AKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIIS 1442
S GQRQ L R LL +L+LDE T+ +D A+ + +++
Sbjct: 82 -----------------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLR 124
Query: 1443 QEFKD-RTVVTIAHRIHTVID-SDLVLVLSDGR 1473
+ ++ RTV+ + H +D V+VL DG+
Sbjct: 125 ELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-27
Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 31/218 (14%)
Query: 646 SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKA------- 698
+D I L +K+G V + G G GK++LL I G Q +G + + G
Sbjct: 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK 76
Query: 699 ----YVPQSPWIL-TGNIRENILFGNQYDSCK-----YDRTVEACALVKDFELFASGDLT 748
V QS + + EN+ FG + R EA LV L
Sbjct: 77 RPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVG---------LE 127
Query: 749 EIGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD- 806
+R + +SGGQ+QR+ +ARA+ + + LLD+P SA+DA Q+ K+ L + ++
Sbjct: 128 GFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKE-LKELQREL 186
Query: 807 -KSVLYVTH-QVEFLPAADIILVMENGRIAQAGRFEEL 842
+ +YVTH Q E L +D I VM +GRI Q G EE+
Sbjct: 187 GITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 5e-27
Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 32/227 (14%)
Query: 1263 SFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIII 1322
NL Y + L +IS T + V +VG GSGKSTL++ + ++ PT G +++
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 1323 DNVDITKIGLHDLRSRLGIIPQDPT--LFDGTVR-------GNLDPLVQYSDKQVW---- 1369
D D+TK+ L +LR ++G++ Q+P F TV NL ++++
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL----GLPEEEIEERVE 116
Query: 1370 EALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASV 1429
EAL+ L L L S GQ+Q + L IL+LDE TA +
Sbjct: 117 EALELVGLEGLRDRSPFTL-----------SGGQKQRVAIAGVLAMDPDILLLDEPTAGL 165
Query: 1430 DSATDGVIQKIISQEFKDR--TVVTIAHRIHTVID-SDLVLVLSDGR 1473
D A + +++ ++ K T++ + H + +++ +D V+VL DG+
Sbjct: 166 DPAGRRELLELL-KKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 5e-27
Identities = 68/215 (31%), Positives = 114/215 (53%), Gaps = 34/215 (15%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
+LK+IS F G +VG +G+GKSTLI+ I R+++PT GSI+ID VDI I + DLR
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRR 77
Query: 1338 RLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEE----------K 1387
++G++ Q P LF+GTV+ N+ + G +++ ++
Sbjct: 78 KIGMVFQQPHLFEGTVKDNI------------------EYGPMLKGEKNVDVEYYLSIVG 119
Query: 1388 LDSTVA-ENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK 1446
L+ A + +N S G+ Q + RTL +L+LDE T+++D + +I+++I + K
Sbjct: 120 LNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI-VKLK 178
Query: 1447 DR---TVVTIAHRIHTVID-SDLVLVLSDGRIAEY 1477
++ TV+ I H + D L+ G + EY
Sbjct: 179 NKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEY 213
|
Length = 241 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 7e-27
Identities = 68/211 (32%), Positives = 100/211 (47%), Gaps = 28/211 (13%)
Query: 646 SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-------- 697
S LD + L V+ G +A+ G G GK++LL I G + +G + I G
Sbjct: 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER 71
Query: 698 ---AYVPQS----PWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEI 750
V Q P + + ENI FG K +A + EL L +
Sbjct: 72 RNIGMVFQDYALFPHL---TVAENIAFG-----LKLRGVPKAEIRARVRELLELVGLEGL 123
Query: 751 GERGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DK 807
R + +SGGQ+QR+ +ARA+ ++ + LLD+P SA+DA +L ++ L + +
Sbjct: 124 LNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE-LKELQRELGI 182
Query: 808 SVLYVTH-QVEFLPAADIILVMENGRIAQAG 837
+ +YVTH Q E L AD I VM GRI Q G
Sbjct: 183 TTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 23/225 (10%)
Query: 625 KGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEI 684
KG +F+ N F++ + L + + G A+ G GSGKS++++ +
Sbjct: 9 KGIVKFQ----NVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY 64
Query: 685 QKMAGTVKISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVE 731
Q G V + G + V Q P + ++++NI +G Q SC ++ E
Sbjct: 65 QPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQ--SCSFECVKE 122
Query: 732 AC--ALVKDF-ELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVD 788
A A F ASG TE+GE+G +SGGQKQR+ IARA+ ++ + +LD+ SA+D
Sbjct: 123 AAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALD 182
Query: 789 AHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRI 833
A + Q+ + L + ++VL + H++ + AD ILV++ GRI
Sbjct: 183 AESEQQV-QQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 2e-26
Identities = 68/213 (31%), Positives = 105/213 (49%), Gaps = 19/213 (8%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
LD I L++K G V I G GSGKS+L I G V + G
Sbjct: 18 LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQ 77
Query: 698 -AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFAS---GDLTEIGER 753
V Q + +IR+NI + S +R +EA L + + G T +GE+
Sbjct: 78 VGVVLQENVLFNRSIRDNIALADPGMS--MERVIEAAKLAGAHDFISELPEGYDTIVGEQ 135
Query: 754 GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVT 813
G +SGGQ+QRI IARA+ + I + D+ SA+D + + ++ + I ++V+ +
Sbjct: 136 GAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN-MHDICAGRTVIIIA 194
Query: 814 HQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846
H++ + AD I+VME GRI + G +ELL +N
Sbjct: 195 HRLSTVKNADRIIVMEKGRIVEQGSHDELLAEN 227
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-26
Identities = 134/508 (26%), Positives = 219/508 (43%), Gaps = 86/508 (16%)
Query: 1011 RTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASND---------QSVLDLELAGRLGW 1061
+ A +L + + R F+ TG ++ RA+ND + VL L + +G
Sbjct: 66 QLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMG- 124
Query: 1062 CAFSIIQILGTIGVMS-QVAWQVFVIFI---PVTGICIWYQQYYIPTARELARLAEIQRA 1117
CA I VMS Q++WQ+ ++ + PV I I + Y E +LA+ +
Sbjct: 125 CAVLI--------VMSTQISWQLTLLALLPMPVMAIMI---KRYGDQLHERFKLAQAAFS 173
Query: 1118 PILHHFAESLAGAATIHAFDQEDRFT-------------NANLSLIDNHSRPW------F 1158
+ ESL I AF EDR + N ++ ID P
Sbjct: 174 SLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGM 233
Query: 1159 HNVSAM---EWLCFR----LNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNV 1211
N+ A+ W+ L L++FV L +I P +A LA + I V
Sbjct: 234 ANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGL---------MIWPMLA-LAWMFNI---V 280
Query: 1212 LQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRY 1271
+ S ++ RI + +EAP+V + P ++ Q Y
Sbjct: 281 ERGSAAYS------------RIRA---MLAEAPVVKDGSEPVPEGRGELDVNIR--QFTY 323
Query: 1272 AEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG 1331
+ L+N++ T + +G+ G TGSGKSTL+ I R + + G I ++ +TK+
Sbjct: 324 PQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQ 383
Query: 1332 LHDLRSRLGIIPQDPTLFDGTVRGNL---DPLVQYSDKQVWEALDKCQLGDLVRAKEEKL 1388
L RSRL ++ Q P LF TV N+ P + +++ + D + +
Sbjct: 384 LDSWRSRLAVVSQTPFLFSDTVANNIALGRP--DATQQEIEHVARLASVHDDILRLPQGY 441
Query: 1389 DSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDR 1448
D+ V E G S GQ+Q + R LL + IL+LD+A ++VD T+ I + Q + R
Sbjct: 442 DTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGR 501
Query: 1449 TVVTIAHRIHTVIDSDLVLVLSDGRIAE 1476
TV+ AHR+ + ++ +LV+ G IA+
Sbjct: 502 TVIISAHRLSALTEASEILVMQHGHIAQ 529
|
Length = 569 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-26
Identities = 69/236 (29%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 1262 ISFHNLQIRYA---EHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMG 1318
I N+ + + L ++S P + G++G +G+GKSTL++ I + PT G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1319 SIIIDNVDIT---KIGLHDLRSRLGIIPQDPTLFDG-TVRGNLD-PL-VQYSDK-----Q 1367
S+ +D D+T + L LR ++G+I Q L TV N+ PL + K +
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 1368 VWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATA 1427
V E L+ L D +L S GQ+Q + R L IL+ DEAT+
Sbjct: 122 VAELLELVGLSDKADRYPAQL-----------SGGQKQRVAIARALANNPKILLCDEATS 170
Query: 1428 SVDSA-TDGVIQ--KIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDS 1479
++D T +++ K I++E T+V I H + V D V VL GR+ E +
Sbjct: 171 ALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225
|
Length = 339 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-26
Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 30/236 (12%)
Query: 1262 ISFHNLQIRYAEHLPSV--LKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
+ NL + + SV L ++S + + +G+VG +GSGKSTL +AI +++PT GS
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 1320 IIIDNVDITKIGLHDL---RSRLGIIPQDPTLFDGTVRGNLDPL--VQYSDKQVWEAL-- 1372
II D D+ K+ R + ++ QDP +L+P + +Q+ E L
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP-------MSSLNPRMTIG---EQIAEPLRI 111
Query: 1373 -----DKCQLGDLVRAKEEK--LDSTVAENGENW-SVGQRQLFCLGRTLLKKSSILVLDE 1424
K + V L V + S GQRQ + R L +L+ DE
Sbjct: 112 HGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADE 171
Query: 1425 ATASVDSATDGVIQKIIS--QEFKDRTVVTIAHRIHTV-IDSDLVLVLSDGRIAEY 1477
T+++D + I ++ QE T++ I H + V +D V V+ G+I E
Sbjct: 172 PTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 4e-26
Identities = 63/214 (29%), Positives = 108/214 (50%), Gaps = 31/214 (14%)
Query: 645 SSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------- 697
P L+ + +VK G +AI G G+GKS+LL ILG ++ +G++++ G
Sbjct: 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKR 69
Query: 698 -AYVPQSPWILTG---NIRENILFGNQYDSC---KYDRTVEACALVKDFELFASGDLTEI 750
YVPQ I ++R+ +L G + + +A E L+E+
Sbjct: 70 IGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVD----EALERVGLSEL 125
Query: 751 GERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--- 806
+R I +SGGQ+QR+ +ARA+ QD D+ LLD+PF+ VD T ++ + +L++
Sbjct: 126 ADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKT-----QEDIYELLRELRR 180
Query: 807 --KSVLYVTHQVE-FLPAADIILVMENGRIAQAG 837
++L VTH + L D +L++ N + +G
Sbjct: 181 EGMTILVVTHDLGLVLEYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 6e-26
Identities = 82/328 (25%), Positives = 147/328 (44%), Gaps = 38/328 (11%)
Query: 549 PTFISVVTFGACMLLGI------QLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVS 602
PT ++ + +++G QLT G +++ + +P+ NL + + +
Sbjct: 383 PTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGD 442
Query: 603 ADRIAAYLQ------EDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLK 656
+R+ L+ +E + A P R VE+ N F ++P P ++ L
Sbjct: 443 LNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSP-LEPPLIENFSLT 501
Query: 657 VKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-------------AYVPQS 703
++ G +VA+ G GSGKS++ + G Q +G + G A V Q
Sbjct: 502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQD 561
Query: 704 PWILTGNIRENILFGNQYDSCKYDRTVEAC--ALVKDFELFASGDL-TEIGERGINMSGG 760
++ G +R+N+ + + V AC A + D G E+ E G N+SGG
Sbjct: 562 IFLFEGTVRDNLTLWD--PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGG 619
Query: 761 QKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK--SVLYVTHQVEF 818
Q+QR++IARA+ ++ I +LD+ SA+D T + L+ + + + V H++
Sbjct: 620 QRQRLEIARALVRNPSILILDEATSALDPETEKI-----IDDNLRRRGCTCIIVAHRLST 674
Query: 819 LPAADIILVMENGRIAQAGRFEELLKQN 846
+ D I+V+E G++ Q G EEL
Sbjct: 675 IRDCDEIIVLERGKVVQRGTHEELWAVG 702
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 6e-26
Identities = 70/262 (26%), Positives = 115/262 (43%), Gaps = 27/262 (10%)
Query: 572 VLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEY---VPKGRS 628
VL LA F + LP + + + +A+RI + + G
Sbjct: 277 VLLPLAAF----EAFAALPAAAQQLTRVRAAAERIVE-VLDAAGPVAEGSAPAAGAVGLG 331
Query: 629 EFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMA 688
+ +E+ + + + P LDG+ L + G +VAI G GSGKS+LL+ + G + +
Sbjct: 332 KPTLELRDLSAGY--PGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQ 389
Query: 689 GTVKISGTKA-------------YVPQSPWILTGNIRENILFGNQYDSCKYD--RTVEAC 733
G V + G Q + +REN+ D+ + +E
Sbjct: 390 GEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARP-DATDEELWAALERV 448
Query: 734 ALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGT 793
L G T +GE G +SGG++QR+ +ARA+ DA I LLD+P +DA T
Sbjct: 449 GLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETAD 508
Query: 794 QLFKDCLMGILKDKSVLYVTHQ 815
+L +D L+ L ++V+ +TH
Sbjct: 509 ELLED-LLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 6e-26
Identities = 52/269 (19%), Positives = 97/269 (36%), Gaps = 9/269 (3%)
Query: 940 GALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVL 999
L L ++ D +L +LL+ V L +
Sbjct: 8 LILAGATALVFPLL------LGRFLDSLIDGNGDERSSLISLAILLIAVG--VLQGLLLQ 59
Query: 1000 LRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRL 1059
L G R ++LF +L + PM+FFD+ G + +R +ND S + L +L
Sbjct: 60 GSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKL 119
Query: 1060 GWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPI 1119
G S+ ++G VM W++ ++ + + + I R+L R + A
Sbjct: 120 GLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKA 179
Query: 1120 LHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVF 1179
ESL+G T+ AF +E+ +++ + L+S +
Sbjct: 180 GSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSY 239
Query: 1180 AFSLVVLVTLPE-GIINPSIAGLAVTYGI 1207
A +L L G ++ ++ G+
Sbjct: 240 ALALWFGAYLVISGGLSVGTVFAFLSLGL 268
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 9e-26
Identities = 68/220 (30%), Positives = 109/220 (49%), Gaps = 2/220 (0%)
Query: 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
G +S N+ I L+ IS + + + ++G +GSGKSTL + I I PT GS
Sbjct: 315 GHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGS 374
Query: 1320 IIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSD-KQVWEALDKCQLG 1378
+ +D D+ + +G +PQD LF GTV N+ + +D +++ EA +
Sbjct: 375 VRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVH 434
Query: 1379 DLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATD-GVI 1437
+L+ + D+ + G S GQRQ L R L ++VLDE +++D + +
Sbjct: 435 ELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALA 494
Query: 1438 QKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEY 1477
I + + + TVV I HR + D +LVL DGRIA +
Sbjct: 495 NAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 2e-25
Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 23/218 (10%)
Query: 646 SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-------- 697
+ P L+ I L V++G A+ G G+GKS+LL ILG ++ +G +KI G
Sbjct: 16 NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRL 75
Query: 698 --AYVPQSPWILTG---NIRENILFGNQYDSCKYDR-TVEACALVKDFELFASGDLTEIG 751
YVPQ + +++ +L G + R + V E + ++
Sbjct: 76 RIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVD--EALERVGMEDLR 133
Query: 752 ERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--KS 808
+R I +SGGQKQR+ +ARA+ Q+ D+ LLD+PF+ VD G + D L+ L+ K+
Sbjct: 134 DRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA-GQKEIYD-LLKELRQEGKT 191
Query: 809 VLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845
VL VTH + + A D ++ + N + +G EE+L +
Sbjct: 192 VLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLTE 228
|
Length = 254 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-24
Identities = 70/211 (33%), Positives = 110/211 (52%), Gaps = 6/211 (2%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
+LK IS + +G++G +GSGKSTL + + I PT GS+ +D D+ + L
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410
Query: 1338 RLGIIPQDPTLFDGTVRGNL---DPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAE 1394
+G +PQD LFDGT+ N+ ++V EA + +L+ + D+ + E
Sbjct: 411 HIGYLPQDVELFDGTIAENIARFGEEA--DPEKVIEAARLAGVHELILRLPQGYDTRIGE 468
Query: 1395 NGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATD-GVIQKIISQEFKDRTVVTI 1453
G S GQRQ L R L ++VLDE +++DS + + I++ + + TVV I
Sbjct: 469 GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVI 528
Query: 1454 AHRIHTVIDSDLVLVLSDGRIAEYDSPTKLL 1484
AHR + D +LVL DGRIA + ++L
Sbjct: 529 AHRPSALASVDKILVLQDGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-24
Identities = 66/241 (27%), Positives = 114/241 (47%), Gaps = 28/241 (11%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ NL Y +L ++S + P + G++G GSGKSTL++ + +++P G ++
Sbjct: 3 LEVENLSFGYGGKP--ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVR--------GNLDPLVQYSDK---QVW 1369
+D DI + +L +L +PQ P+ G TV +L + S + V
Sbjct: 61 LDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVE 120
Query: 1370 EALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASV 1429
EAL+ L L D V E S G+RQ + R L +++ IL+LDE T+ +
Sbjct: 121 EALELLGLEHLA-------DRPVDE----LSGGERQRVLIARALAQETPILLLDEPTSHL 169
Query: 1430 DSATDGVIQKIISQ--EFKDRTVVTIAHRI-HTVIDSDLVLVLSDGRIAEYDSPTKLLER 1486
D A + +++ K TVV + H + +D +++L DG+I +P ++L
Sbjct: 170 DIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE 229
Query: 1487 E 1487
E
Sbjct: 230 E 230
|
Length = 258 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 102 bits (258), Expect = 2e-24
Identities = 68/246 (27%), Positives = 113/246 (45%), Gaps = 26/246 (10%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I L + +VLK + + + ++G +GSGKSTL++ I ++ P G ++
Sbjct: 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 1322 IDNVDITK---IGLHDLRSRLGIIPQDPTLFDG-TVRGNLD-PLVQYSDKQVWEALDKCQ 1376
ID DI+ L+ LR R+G++ Q LFD TV N+ PL +++ L + +
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTR------LSEEE 112
Query: 1377 LGDLVRAK------EEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD 1430
+ ++V K D AE S G ++ L R L +L+ DE TA +D
Sbjct: 113 IREIVLEKLEAVGLRGAEDLYPAE----LSGGMKKRVALARALALDPELLLYDEPTAGLD 168
Query: 1431 SATDGVIQKIIS--QEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE 1487
GVI +I ++ T + + H + T +D + VL DG+I +P +L +
Sbjct: 169 PIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASD 228
Query: 1488 DSFFSQ 1493
D Q
Sbjct: 229 DPLVRQ 234
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 3e-24
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 22/219 (10%)
Query: 1262 ISFHNLQIRY---AEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMG 1318
IS + + + LK+I+ P + V +VG GSGKS+L+ A+ +E G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 1319 SIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLG 1378
S+ + + + Q+P + +GT+R N+ + +++ + + C L
Sbjct: 61 SVSV-------------PGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALE 107
Query: 1379 -DLVRAKEEKLDST-VAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT-DG 1435
DL D T + E G N S GQ+Q L R + + I +LD+ ++VD+
Sbjct: 108 PDL--EILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRH 165
Query: 1436 VIQKIISQEFKD-RTVVTIAHRIHTVIDSDLVLVLSDGR 1473
+ + I + +T + + H++ + +D ++VL +GR
Sbjct: 166 IFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 3e-24
Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 47/202 (23%)
Query: 633 EVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVK 692
E+ N F + LD + L +K G VA+ G GSGKS+LL I G ++ +G +
Sbjct: 1 EIENLSFRYG---GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 693 ISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGE 752
I G + +R I + Q
Sbjct: 58 IDGKD-----IAKLPLEELRRRIGYVPQ-------------------------------- 80
Query: 753 RGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD-KSVLY 811
+SGGQ+QR+ +ARA+ + D+ LLD+P S +D + + + L + ++ ++V+
Sbjct: 81 ----LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASR-ERLLELLRELAEEGRTVII 135
Query: 812 VTHQVEFL-PAADIILVMENGR 832
VTH E AAD ++V+++G+
Sbjct: 136 VTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 3e-24
Identities = 64/231 (27%), Positives = 107/231 (46%), Gaps = 46/231 (19%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK---------- 697
P LD + + +G I G GSGKS+LL C+ G ++ +G V + G
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75
Query: 698 ---AYVPQSPWILTGNI--RENILFG--------NQYDSCKYDRTVEACALVKDFELFAS 744
AYVPQSP + E +L G + + EA L+
Sbjct: 76 KKLAYVPQSP-SAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELL-------- 126
Query: 745 GDLTEIGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI 803
L + +R ++ +SGG++QR+ IARA+ Q+ I LLD+P S +D Q+ ++ +
Sbjct: 127 -GLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIA--HQIE---VLEL 180
Query: 804 LKD------KSVLYVTHQVEF-LPAADIILVMENGRIAQAGRFEELLKQNI 847
L+D +V+ V H + AD ++++++G+I G EE+L +
Sbjct: 181 LRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEEN 231
|
Length = 258 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 4e-24
Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 66/210 (31%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
LD + L ++ G V I G G+GKS+LL + G ++ +G + + G
Sbjct: 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK 74
Query: 698 -AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGIN 756
AYVPQ A L+ L + +R N
Sbjct: 75 IAYVPQ-----------------------------ALELL---------GLAHLADRPFN 96
Query: 757 -MSGGQKQRIQIARAVYQDADIYLLDDPFSAVD-AHTGTQLFKDCLMGILKD------KS 808
+SGG++QR+ +ARA+ Q+ I LLD+P S +D AH Q+ L+ +L+ K+
Sbjct: 97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH---QIE---LLELLRRLARERGKT 150
Query: 809 VLYVTHQVEF-LPAADIILVMENGRIAQAG 837
V+ V H + AD ++++++GRI G
Sbjct: 151 VVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-24
Identities = 65/243 (26%), Positives = 119/243 (48%), Gaps = 27/243 (11%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I NL RY LK++S ++V ++G GSGKSTL++ + +++PT G ++
Sbjct: 4 IEAENLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 1322 IDNVDIT-KIGLHDLRSRLGIIPQDPT--LFDGTVRGNLD-PLVQYS------DKQVWEA 1371
+D +D + + L +LR ++G++ Q+P LF TV + L +++V EA
Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEA 122
Query: 1372 LDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD- 1430
L+ L +L+ L S GQ+Q + L IL+LDE TA +D
Sbjct: 123 LELVGLEELLDRPPFNL-----------SGGQKQRVAIAGVLAMGPEILLLDEPTAGLDP 171
Query: 1431 SATDGVIQKI--ISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE 1487
+++ + + +E +T++ + H + V++ +D V+VL DG+I P ++
Sbjct: 172 KGRRELLELLKKLKEEGG-KTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
Query: 1488 DSF 1490
+
Sbjct: 231 ELL 233
|
Length = 235 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 1e-23
Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 34/231 (14%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I NL + Y VL++IS + + ++G G+GKSTL++AI +++P+ G I
Sbjct: 5 IEVENLTVSYGNRP--VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQ----DPTLFDGTVR-----------GNLDPLVQYSDK 1366
I + K R R+G +PQ D + F TV+ G L + +
Sbjct: 63 IFGKPVRKR---RKRLRIGYVPQKSSVDRS-FPITVKDVVLLGRYGKKGWFRRLNKKDKE 118
Query: 1367 QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEAT 1426
+V EAL++ + DL D + E S GQ+Q L R L + +L+LDE
Sbjct: 119 KVDEALERVGMEDL-------RDRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPF 167
Query: 1427 ASVDSATDGVIQKIISQEFKD-RTVVTIAHRIHTVID-SDLVLVLSDGRIA 1475
VD A I ++ + ++ +TV+ + H + V+ D V+ L+ IA
Sbjct: 168 TGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIA 218
|
Length = 254 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 61/228 (26%), Positives = 102/228 (44%), Gaps = 36/228 (15%)
Query: 632 VEVVNGKFSWNPES-SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT 690
+E+ N ++ L G+ L +++G VAI G GSGKS+LL+ + G + +G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 691 VKISGTKA-----------------YVPQSPWILTG-NIRENILFGNQYDSCKYDRTVEA 732
V++ GT +V QS +L EN+ + +
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLL-AGVPKKERRE 119
Query: 733 CALVKDFELFASGDLTEIGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHT 791
A EL L + + +SGGQ+QR+ IARA+ D I L D+P +D+ T
Sbjct: 120 RAE----ELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175
Query: 792 GTQLFKDCLMGILKD------KSVLYVTHQVEFLPAADIILVMENGRI 833
G + +M +L++ +++ VTH E AD I+ + +G+I
Sbjct: 176 GKE-----VMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 64/245 (26%), Positives = 115/245 (46%), Gaps = 43/245 (17%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP-----T 1316
I +L + Y + LK+I+ P K ++G +G GKSTL++ + R+ +
Sbjct: 8 IEVRDLNLYYGDKH--ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65
Query: 1317 MGSIIIDNVDI--TKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYS---------- 1364
G +++D +I K+ + +LR R+G++ Q P F ++ N V Y
Sbjct: 66 EGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDN----VAYGLRLHGIKDKE 121
Query: 1365 -DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLD 1423
D+ V +L K L D V+ ++L ++ S GQ+Q C+ R L K +L++D
Sbjct: 122 LDEIVESSLKKAALWDEVK---DRLH----KSALGLSGGQQQRLCIARALAVKPEVLLMD 174
Query: 1424 EATASVDSATDGVIQKIISQEFKDRTVVTIAH------RIHTVIDSDLVLVLSDGRIAEY 1477
E T+++D + I+++I++ K T+V + H R+ SD G + E+
Sbjct: 175 EPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARV-----SDYTAFFYLGELVEF 229
Query: 1478 DSPTK 1482
PT
Sbjct: 230 G-PTD 233
|
Length = 253 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 5e-23
Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 29/240 (12%)
Query: 1262 ISFHNLQIRYAEHLPSV--LKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
I N+ + + V LK++S + P + G++GR+G+GKSTLI+ I + PT GS
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 1320 IIIDNVDITKI---GLHDLRSRLGIIPQDPTLFDG-TVRGNLD-PL------VQYSDKQV 1368
+++D D+T + L R R+G+I Q L TV N+ PL +++V
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 1369 WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATAS 1428
E L+ L D A +L S GQ+Q + R L +L+ DEAT++
Sbjct: 122 LELLELVGLEDKADAYPAQL-----------SGGQKQRVGIARALANNPKVLLCDEATSA 170
Query: 1429 VDSA-TDGVIQ--KIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484
+D T ++ + I++E T+V I H + V D V V+ G + E + ++
Sbjct: 171 LDPETTQSILALLRDINREL-GLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 6e-23
Identities = 85/299 (28%), Positives = 134/299 (44%), Gaps = 24/299 (8%)
Query: 566 QLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADR---IAAYLQEDEIQRDAVEY 622
QLT G +++ A L P+ L I Q ++ + E DA
Sbjct: 196 QLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDA-PP 254
Query: 623 VPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG 682
+ R V +N F+++P P L+GI + G VAI G G+GKS++L +
Sbjct: 255 LWPVRLGA-VAFINVSFAYDPRR--PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFR 311
Query: 683 EIQKMAGTVKISG------TKAY-------VPQSPWILTGNIRENILFGN--QYDSCKYD 727
+G++ I G T+ VPQ + I NI +G
Sbjct: 312 FYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVG- 370
Query: 728 RTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAV 787
EA + + G T +GERG+ +SGG+KQR+ IAR + ++ I +LD+ SA+
Sbjct: 371 AAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSAL 430
Query: 788 DAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846
D HT Q + L + ++ L + H++ + AD I+V++NGRI + G EELL
Sbjct: 431 DTHT-EQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAG 488
|
Length = 497 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 6e-23
Identities = 68/237 (28%), Positives = 121/237 (51%), Gaps = 17/237 (7%)
Query: 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT 690
VE + F + SS D + + K G VAI G G+GK++L++ + G
Sbjct: 334 AVEFRHITFEF-ANSSQGVFD-VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQ 391
Query: 691 VKISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVK 737
+ I G A V Q + +IRENI G + + + A
Sbjct: 392 ILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAH 451
Query: 738 DF-ELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLF 796
DF ++G T +GERG +SGG++QR+ IARA+ ++A I +LD+ SA+D T ++
Sbjct: 452 DFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARV- 510
Query: 797 KDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLV 853
K+ + + K+++ + H++ + AD++L ++ GR+ + G F+EL++++ F L+
Sbjct: 511 KNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLL 567
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 6e-23
Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKM-AGTVKISGTK--------- 697
L + L+++ G VAI G GSGKS+LL+ +LG + K +G V I+G
Sbjct: 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKPTSGEVLINGKDLTKLSEKEL 77
Query: 698 --------AYVPQSPWIL-TGNIRENILFGNQYDSCKYDRTVEAC-ALVKDFELFASGDL 747
+V Q+ +L + EN+ R A L++ L
Sbjct: 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLK 137
Query: 748 TEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--- 804
+ E +SGGQ+QR+ IARA+ + I L D+P +D+ T ++ + L+ L
Sbjct: 138 KKPSE----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE--LLRELNKE 191
Query: 805 KDKSVLYVTHQVEFLPAADIILVMENGRIAQ 835
+ K+++ VTH E AD ++ +++G+I +
Sbjct: 192 RGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 7e-23
Identities = 71/235 (30%), Positives = 108/235 (45%), Gaps = 35/235 (14%)
Query: 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT 690
E+E+ N + S+ S L + L ++ G V + G G GKS+LL I G + +G
Sbjct: 3 ELELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 691 VKISGTK-----------AYVPQSPWIL--TGNIRENILFGNQYDSCKYDRTVEACALVK 737
+ I G A V Q+ L + ENI FG + + E VK
Sbjct: 60 ILIDGRDVTDLPPEKRGIAMVFQNY-ALYPHMTVYENIAFGLKLR--GVPKA-EIDKRVK 115
Query: 738 DFELFASGDLTEIGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLF 796
+ L + R +SGGQ+QR+ +ARA+ + ++LLD+P S +DA
Sbjct: 116 EVA--KLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKL----- 168
Query: 797 KDCLMGILKD------KSVLYVTH-QVEFLPAADIILVMENGRIAQAGRFEELLK 844
+ + +K + +YVTH QVE + AD I+VM +GRI Q G EL +
Sbjct: 169 RVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYE 223
|
Length = 338 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 8e-23
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 56/205 (27%)
Query: 643 PESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK----- 697
P + P L + ++ G +AI G GSGKS+L ILG ++ +G V++ G
Sbjct: 11 PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD 70
Query: 698 --------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTE 749
Y+PQ + +G+I ENIL
Sbjct: 71 PNELGDHVGYLPQDDELFSGSIAENIL--------------------------------- 97
Query: 750 IGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI-LKDKS 808
SGGQ+QR+ +ARA+Y + I +LD+P S +D G + + + +
Sbjct: 98 --------SGGQRQRLGLARALYGNPRILVLDEPNSHLD-VEGERALNQAIAALKAAGAT 148
Query: 809 VLYVTHQVEFLPAADIILVMENGRI 833
+ + H+ E L +AD ILV+E+GR+
Sbjct: 149 RIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 9e-23
Identities = 68/245 (27%), Positives = 115/245 (46%), Gaps = 33/245 (13%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PT 1316
I NL + Y E LKNI+ P + ++G +G GKSTL++++ R+ +
Sbjct: 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRI 59
Query: 1317 MGSIIIDNVDIT--KIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYS---------- 1364
G ++ D DI KI + +LR R+G++ Q P F ++ N + Y
Sbjct: 60 EGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDN----IAYGPRLHGIKDKK 115
Query: 1365 --DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVL 1422
D+ V E+L K L D V+ ++L ++ S GQ+Q C+ R L + +L+L
Sbjct: 116 ELDEIVEESLKKAALWDEVK---DRLH----DSALGLSGGQQQRLCIARALAVEPEVLLL 168
Query: 1423 DEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPT 1481
DE T+++D G I+++I + K T+V + H + SD DG + EY
Sbjct: 169 DEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTE 228
Query: 1482 KLLER 1486
++
Sbjct: 229 QIFTN 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 9e-23
Identities = 71/250 (28%), Positives = 116/250 (46%), Gaps = 25/250 (10%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I F N+ RY + +++ T + + ++G +GSGK+T ++ I R++EPT G I+
Sbjct: 2 IEFENVSKRYGNK--KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGN--LDPLVQYSDKQ-----VWEALD 1373
ID DI+ + +LR ++G + Q LF TV N P + DK+ E LD
Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLD 119
Query: 1374 KCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT 1433
L E D E S GQ+Q + R L IL++DE ++D T
Sbjct: 120 LVGLD-----PSEYADRYPHE----LSGGQQQRVGVARALAADPPILLMDEPFGALDPIT 170
Query: 1434 DGVIQ---KIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER-ED 1488
+Q K + +E +T+V + H I + +D + V+ G I +YD+P ++L +
Sbjct: 171 RKQLQEEIKELQKELG-KTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAN 229
Query: 1489 SFFSQLIKEY 1498
F E
Sbjct: 230 DFVEDFFGES 239
|
Length = 309 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 1e-22
Identities = 70/263 (26%), Positives = 129/263 (49%), Gaps = 31/263 (11%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I + + + + +L + P + + ++G +GSGKSTL++ I ++ P G I+
Sbjct: 9 IEVRGVTKSFGDRV--ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66
Query: 1322 IDNVDITKI---GLHDLRSRLGIIPQDPTLFDG-TVRGNLD-PLVQYSDKQVWEALDKCQ 1376
ID DI ++ L+++R R+G++ Q LF TV N+ PL +++ L +
Sbjct: 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTK------LPESL 120
Query: 1377 LGDLVRAKEEK--LDSTVAEN--GENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSA 1432
+ +LV K E L A+ E S G R+ L R + +L LDE T+ +D
Sbjct: 121 IRELVLMKLELVGLRGAAADLYPSE-LSGGMRKRVALARAIALDPELLFLDEPTSGLDPI 179
Query: 1433 TDGVIQKIIS--QEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDS 1489
+ GVI ++I + TV+ + H + +++ +D V VL+DG++ +P +LL +D
Sbjct: 180 SAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDD- 238
Query: 1490 FFSQLIKEYSMRSQNFNSVAGRP 1512
++++ FN + P
Sbjct: 239 ---PWVRQF------FNGIRDGP 252
|
Length = 263 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 2e-22
Identities = 65/249 (26%), Positives = 111/249 (44%), Gaps = 35/249 (14%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I NL Y LK+++ + V ++G +G+GKSTL++++ +V+PT G I+
Sbjct: 4 IEVKNLSKTYPGGHQ-ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 1322 IDNVDITKI---GLHDLRSRLGIIPQDPTL------FDGTVRGNLD---------PLVQY 1363
+ V ITK+ L LR +G+I Q L + + G L L
Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK 122
Query: 1364 SDK-QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVL 1422
DK Q +AL++ + D + L S GQ+Q + R L+++ I++
Sbjct: 123 EDKAQALDALERVGILDKAYQRASTL-----------SGGQQQRVAIARALVQQPKIILA 171
Query: 1423 DEATASVDSATDGVIQKIISQEFKDR--TVVTIAHRIHTVID-SDLVLVLSDGRIAEYDS 1479
DE AS+D + + I+ ++ TV+ H++ +D ++ L GRI +D
Sbjct: 172 DEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDG 230
Query: 1480 PTKLLERED 1488
P L E
Sbjct: 231 PASELTDEA 239
|
Length = 258 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 95.5 bits (239), Expect = 2e-22
Identities = 48/186 (25%), Positives = 90/186 (48%), Gaps = 30/186 (16%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709
LD I L V++G + G G+GK++L+ ILG ++ +G +K+ G +
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLG------KDIKKEPE 69
Query: 710 NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIAR 769
++ I L ++ L+ +LT + +SGG KQR+ +A+
Sbjct: 70 EVKRRI-----------------GYLPEEPSLY--ENLT--VRENLKLSGGMKQRLALAQ 108
Query: 770 AVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD-KSVLYVTHQVEFLPA-ADIILV 827
A+ D ++ +LD+P S +D + + F + L + K+ K++L +H +E D + +
Sbjct: 109 ALLHDPELLILDEPTSGLDPES-RREFWELLRELKKEGKTILLSSHILEEAERLCDRVAI 167
Query: 828 MENGRI 833
+ NGRI
Sbjct: 168 LNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 2e-22
Identities = 61/248 (24%), Positives = 116/248 (46%), Gaps = 28/248 (11%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I N+ Y + LKN+S + V ++G GSGKST+ + + +++P G I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDP-------TLFDGTVRG----NLDPLVQYSDKQVWE 1370
ID + I+K L ++R ++GII Q+P T+ D G + P + + +
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPP--KKMKDIIDD 125
Query: 1371 ALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD 1430
K + D + + + L S GQ+Q + L I++ DE+T+ +D
Sbjct: 126 LAKKVGMEDYLDKEPQNL-----------SGGQKQRVAIASVLALNPEIIIFDESTSMLD 174
Query: 1431 SATDGVIQKIIS--QEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLERED 1488
I+KI+ ++ + +T+++I H + I +D V+V S+G++ P ++L ++
Sbjct: 175 PKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNKE 234
Query: 1489 SFFSQLIK 1496
+ K
Sbjct: 235 --ILEKAK 240
|
Length = 271 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 94.8 bits (237), Expect = 3e-22
Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 48/217 (22%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I NL RY + L +IS T + G++G G+GK+TLI+ I +++P G I
Sbjct: 1 IEVRNLSKRYGKKT--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQLGDL 1380
+ DI K +++ R+G +P++P+L++ TVR NL S
Sbjct: 59 VLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLK----LSG--------------- 98
Query: 1381 VRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKI 1440
G +Q L + LL +L+LDE T+ +D + ++
Sbjct: 99 ---------------------GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL 137
Query: 1441 ISQEFKDR--TVVTIAHRIHTVID-SDLVLVLSDGRI 1474
+ +E K T++ +H + D V +L++GRI
Sbjct: 138 L-RELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 3e-22
Identities = 61/218 (27%), Positives = 95/218 (43%), Gaps = 46/218 (21%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ N+ RY + VL ++S + V ++G +GSGKSTL++ I + EP GSI+
Sbjct: 1 LELKNVSKRYGQKT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 1322 IDNVDITKIGLH--DLRSRLGIIPQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQLG 1378
ID D+T + LR R+G++ QD LF TV N + L
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLEN-----------IALGL------ 101
Query: 1379 DLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQ 1438
S GQ+Q L R L +L+LDE T+++D T ++
Sbjct: 102 ---------------------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140
Query: 1439 KIISQEFKD--RTVVTIAHRIHTVID-SDLVLVLSDGR 1473
++ TVV + H + +D V+VL DG+
Sbjct: 141 ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-22
Identities = 88/367 (23%), Positives = 161/367 (43%), Gaps = 71/367 (19%)
Query: 1173 LLSNFVFAF---SLVVLVTLPEGIINPSIAG---LAVTYGINLNVLQASIIWNICNAENK 1226
+L+++ F F + +++ L N G +++ G+ +++ +II + N
Sbjct: 291 ILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTII--LPNITEY 348
Query: 1227 MISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLP-SVLKNISCT 1285
M S+E + + PLV E D+ I F N++ Y + K+++ T
Sbjct: 349 MKSLEATNSLYEIINRKPLV-ENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFT 407
Query: 1286 FPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIII-DNVDITKIGLHDLRSRLGIIPQ 1344
K VG +G GKST+++ I R+ +PT G III D+ ++ I L RS++G++ Q
Sbjct: 408 LTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQ 467
Query: 1345 DPTLFDGTVRGNL-------------------DPLVQYSDKQVWEALDKCQLGDL----- 1380
DP LF +++ N+ D +K + GDL
Sbjct: 468 DPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSN 527
Query: 1381 ----------------------------------VRAKEEKLDSTVAENGENWSVGQRQL 1406
V A +K ++ V N S GQ+Q
Sbjct: 528 TTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQR 587
Query: 1407 FCLGRTLLKKSSILVLDEATASVDSATDGVIQKIIS--QEFKDRTVVTIAHRIHTVIDSD 1464
+ R +++ IL+LDEAT+S+D+ ++ ++QK I+ + ++R + IAHR+ T+ ++
Sbjct: 588 ISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYAN 647
Query: 1465 LVLVLSD 1471
+ VLS+
Sbjct: 648 TIFVLSN 654
|
Length = 1466 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 4e-22
Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 33/221 (14%)
Query: 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT 690
E+EV N + P+ P L + KVK G K+ I G G+GKS+L+ + ++ G
Sbjct: 6 EIEVENLSVRYAPDLP-PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGK 64
Query: 691 VKISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVK 737
++I G +PQ P + +G IR N+ ++Y
Sbjct: 65 IEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYS--------------- 109
Query: 738 DFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFK 797
D E++ + + E G+N+S GQ+Q + +ARA+ + + +LD+ +++D T L +
Sbjct: 110 DEEIYGA---LRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA-LIQ 165
Query: 798 DCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGR 838
+ + ++L + H++ + D ILVM+ G + +
Sbjct: 166 KTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 4e-22
Identities = 71/218 (32%), Positives = 107/218 (49%), Gaps = 36/218 (16%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-----------KA 698
L + L+V+RG I G GSGKS LL I G I+ +G + ++G +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74
Query: 699 YVPQSPWILTG-NIRENILFG---NQYDSCKYDRTV-EACALVKDFELFASGDLTEIGER 753
YVPQ+ + + +NI +G + D + +R V E ++ L T
Sbjct: 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET----- 129
Query: 754 GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK------DK 807
+SGG++QR+ IARA+ + I LLD+PFSA+D T K+ L LK
Sbjct: 130 ---LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRT-----KEKLREELKKIRKEFGV 181
Query: 808 SVLYVTH-QVEFLPAADIILVMENGRIAQAGRFEELLK 844
+VL+VTH E AD + +M NG++ Q G+ EE+ K
Sbjct: 182 TVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 5e-22
Identities = 75/215 (34%), Positives = 112/215 (52%), Gaps = 34/215 (15%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKA----------- 698
LD + L+V G VA+ G GSGKS+LL I G Q +G ++++G A
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 699 YVPQSPWI---LTGNIRENILFG---NQYDSCKYDRTVEACALVKDFELFASGDLTEIGE 752
+V Q + LT +R+NI FG ++ K VE EL L +G+
Sbjct: 76 FVFQHYALFKHLT--VRDNIAFGLEIRKHPKAKIKARVE--------ELLELVQLEGLGD 125
Query: 753 RGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK---S 808
R N +SGGQ+QR+ +ARA+ + + LLD+PF A+DA +L + L D+ +
Sbjct: 126 RYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRS--WLRKLHDEVHVT 183
Query: 809 VLYVTH-QVEFLPAADIILVMENGRIAQAGRFEEL 842
++VTH Q E + AD I+VM NG+I Q G +E+
Sbjct: 184 TVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 5e-22
Identities = 68/213 (31%), Positives = 97/213 (45%), Gaps = 33/213 (15%)
Query: 650 LDGIQLKVK---RGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK--------- 697
L LK+ I G G+GKS+LL CI G + GT+ ++GT
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 698 --------AYVPQSPWILTG-NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLT 748
V Q + N+REN+ FG + + DR EL L
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVD-------ELLDLLGLD 122
Query: 749 EIGERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD- 806
+ R +SGG+KQR+ +ARA+ ++ LLD+PFSA+D QL + L I K+
Sbjct: 123 HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE-LKQIKKNL 181
Query: 807 -KSVLYVTHQ-VEFLPAADIILVMENGRIAQAG 837
V++VTH E AD I+VME+GR+ G
Sbjct: 182 NIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 2e-21
Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 23/209 (11%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKA--------- 698
LD I L +K G VA+ G G+GKS+LL I G AG ++++G
Sbjct: 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR 75
Query: 699 -----YVPQSPWILTG-NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGE 752
+V Q + + +NI FG + + +R EA + EL L + +
Sbjct: 76 DRKVGFVFQHYALFPHMTVADNIAFGLK---VRKERPSEAEIRARVEELLRLVQLEGLAD 132
Query: 753 RGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DKSV 809
R +SGGQ+QR+ +ARA+ + + LLD+PF A+DA +L + L + +
Sbjct: 133 RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL-RRWLRKLHDRLGVTT 191
Query: 810 LYVTH-QVEFLPAADIILVMENGRIAQAG 837
++VTH Q E L AD ++V+ GRI Q G
Sbjct: 192 VFVTHDQEEALELADRVVVLNQGRIEQVG 220
|
Length = 345 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 3e-21
Identities = 75/248 (30%), Positives = 120/248 (48%), Gaps = 26/248 (10%)
Query: 627 RSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQK 686
R++ ++E N F++ P P L I K+ G VA+ G GSGKS++ + +
Sbjct: 337 RAKGDIEFRNVTFTY-PGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI 395
Query: 687 MAGTVKISGTK-------------AYVPQSPWILTGNIRENILF--GNQYDSCKYDRTVE 731
G + + G A V Q+ + I NI + QY + +
Sbjct: 396 DEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAAR 455
Query: 732 ACALVKDF-ELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAH 790
A DF +G T IGE G+ +SGGQ+QRI IARA+ +D+ I +LD+ SA+D
Sbjct: 456 M-AYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
Query: 791 TGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFE 850
+ + + L + K+++ L + H++ + AD ILV+E+G I + G ELL QN
Sbjct: 515 S-ERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQN---- 569
Query: 851 VLVGAHSQ 858
G ++Q
Sbjct: 570 ---GVYAQ 574
|
Length = 582 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 3e-21
Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 28/187 (14%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709
L+ + L ++ G VA+ G GSGKS+LL CI G + +G++ I G
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDL---TDLEDELP 72
Query: 710 NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIAR 769
+R I + +DF LF LT + + +SGGQ+QR+ +AR
Sbjct: 73 PLRRRIGM-----------------VFQDFALFPH--LTVLENIALGLSGGQQQRVALAR 113
Query: 770 AVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKS---VLYVTHQVEFLPA-ADII 825
A+ D D+ LLD+P SA+D T ++ L+ L+ + V+ VTH ++ AD +
Sbjct: 114 ALAMDPDVLLLDEPTSALDPITRREVRA--LLKSLQAQLGITVVLVTHDLDEAARLADRV 171
Query: 826 LVMENGR 832
+V+ +G+
Sbjct: 172 VVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 5e-21
Identities = 65/243 (26%), Positives = 117/243 (48%), Gaps = 28/243 (11%)
Query: 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSI 1320
+ N++ + VLK+++ + V ++G +G GKSTL++ I + EPT G I
Sbjct: 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 1321 IIDNVDITKIGLHDLRSRLGIIPQDPTLFD-GTVRGNLD-PL------VQYSDKQVWEAL 1372
+ID D+T L + + ++ Q+ L+ TV N+ L DK+V E
Sbjct: 61 LIDGRDVTD--LPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118
Query: 1373 DKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSA 1432
L L+ K +L S GQRQ L R L++K + +LDE +++D+
Sbjct: 119 KLLGLEHLLNRKPLQL-----------SGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
Query: 1433 TDGVIQKIISQEFKDRTVVTIAHRIHTVID----SDLVLVLSDGRIAEYDSPTKLLERED 1488
+++ I ++ +R T + H ++ +D ++V++DGRI + +P +L ER
Sbjct: 168 LRVLMRSEI-KKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226
Query: 1489 SFF 1491
+ F
Sbjct: 227 NLF 229
|
Length = 338 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 6e-21
Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 36/224 (16%)
Query: 1263 SFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIII 1322
+L + Y H VL+++S + + +VG G+GKSTL++AI +++PT GSI +
Sbjct: 1 EVEDLTVSYGGHP--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58
Query: 1323 DNVDITKIGLHDLRSRLGIIPQ----DPTLFDGTVR--------GNLDPLVQYSDKQ--- 1367
+ K R R+G +PQ D F +VR G+ + S
Sbjct: 59 FGKPLEKE-----RKRIGYVPQRRSIDRD-FPISVRDVVLMGLYGHKGLFRRLSKADKAK 112
Query: 1368 VWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATA 1427
V EAL++ L +L + +L S GQ+Q L R L++ +L+LDE A
Sbjct: 113 VDEALERVGLSELADRQIGEL-----------SGGQQQRVLLARALVQDPDLLLLDEPFA 161
Query: 1428 SVDSATDGVIQKIISQ-EFKDRTVVTIAHRIHTVIDS-DLVLVL 1469
VD T I +++ + + T++ + H + V++ D VL+L
Sbjct: 162 GVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL 205
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 6e-21
Identities = 57/207 (27%), Positives = 106/207 (51%), Gaps = 12/207 (5%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL-- 1335
LK+++ + V +VG +GSGKSTL+ + + +PT G ++I+ D+TK+ +L
Sbjct: 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79
Query: 1336 --RSRLGIIPQDPTLF-DGTVRGNLD-PLVQYSDKQVWEALDKCQLGDLVRAKEEKLDST 1391
R ++G + Q+ L D TV N++ PL+ +L +++ ++ L
Sbjct: 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKK 139
Query: 1392 VAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDR--T 1449
+E S GQ+Q + R L+ I++ DE T ++DS T + +++ + K+R T
Sbjct: 140 PSE----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKT 195
Query: 1450 VVTIAHRIHTVIDSDLVLVLSDGRIAE 1476
++ + H +D V+ L DG+I E
Sbjct: 196 IIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 8e-21
Identities = 70/231 (30%), Positives = 106/231 (45%), Gaps = 26/231 (11%)
Query: 1272 AEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIID--NVDITK 1329
+ ++S + +G+VG +GSGKSTL + + ++ P+ GSII D ++D+T
Sbjct: 300 ERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359
Query: 1330 IGLHDLRSRLGIIPQDPTLFDG-----TVRGNL-DPLVQYSDKQVWEALDK-CQLGDLVR 1382
L LR R+ ++ QDP + TV L +PL + E + +L +LV
Sbjct: 360 GELRRLRRRIQMVFQDP--YSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVG 417
Query: 1383 AKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIIS 1442
E LD E S GQRQ + R L + +L+LDE SA D +Q +
Sbjct: 418 LPPEFLDRYPHE----LSGGQRQRVAIARALALEPKLLILDEPV----SALDVSVQAQVL 469
Query: 1443 QEFKD------RTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486
KD T + I+H + V +D V V+ DGRI E K+ E
Sbjct: 470 NLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 9e-21
Identities = 52/215 (24%), Positives = 98/215 (45%), Gaps = 46/215 (21%)
Query: 1265 HNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN 1324
NL + Y +VL ++S + + VG++G G+GKSTL++ + +++P+ G I++D
Sbjct: 3 ENLSVGYGGR--TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 1325 VDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAK 1384
D+ + +L ++ +PQ AL+ L L
Sbjct: 61 KDLASLSPKELARKIAYVPQ--------------------------ALELLGLAHL---A 91
Query: 1385 EEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD----SATDGVIQKI 1440
+ + S G+RQ L R L ++ IL+LDE T+ +D +++++
Sbjct: 92 DRPFNEL--------SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL 143
Query: 1441 ISQEFKDRTVVTIAHRI-HTVIDSDLVLVLSDGRI 1474
+ + +TVV + H + +D V++L DGRI
Sbjct: 144 ARE--RGKTVVMVLHDLNLAARYADRVILLKDGRI 176
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 1e-20
Identities = 90/316 (28%), Positives = 139/316 (43%), Gaps = 27/316 (8%)
Query: 549 PTFISVVTFGACMLL--GIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRI 606
P S F A + L G L+ G L+ F + L + L +I +R
Sbjct: 369 PVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERA 428
Query: 607 AAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAIC 666
L + + G+ +EV F + P+ LD + L+++ G VAI
Sbjct: 429 KPIL--EALPEVDEAKTDPGKLSGAIEVDRVTFRYRPDGP-LILDDVSLQIEPGEFVAIV 485
Query: 667 GTVGSGKSSLLSCILGEIQKMAGTVKISG-------TKAY------VPQSPWILTGNIRE 713
G GSGKS+LL +LG +G+V G +A V Q+ +++G+I E
Sbjct: 486 GPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFE 545
Query: 714 NILFGNQYDSCKYDRTVEA---CALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARA 770
NI G D EA L +D G T I E G +SGGQ+QR+ IARA
Sbjct: 546 NIAGGAPL---TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARA 602
Query: 771 VYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMEN 830
+ + I L D+ SA+D TQ + LK ++ + H++ + AD I V++
Sbjct: 603 LVRKPRILLFDEATSALDNR--TQAIVSESLERLKVTRIV-IAHRLSTIRNADRIYVLDA 659
Query: 831 GRIAQAGRFEELLKQN 846
GR+ Q G ++EL+ +
Sbjct: 660 GRVVQQGTYDELMARE 675
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 2e-20
Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 38/240 (15%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
+E N F + L + L++++G +V + G GSGKS+LL + G ++ +G V
Sbjct: 4 IEAENLSFRYPGRK--AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 692 KISGTK--------------AYVPQSP--WILTGNIRENILFG--NQY--DSCKYDRTVE 731
+ G V Q+P + + + + FG N +R E
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 732 ACALVKDFELFASGDLTEIGERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAH 790
A LV L E+ +R N+SGGQKQR+ IA + +I LLD+P + +D
Sbjct: 122 ALELV---------GLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPK 172
Query: 791 TGTQLFKDCLMGILKD---KSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQN 846
+L + L+ LK+ K+++ VTH +E + AD ++V+++G+I G E+
Sbjct: 173 GRRELLE--LLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
|
Length = 235 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 2e-20
Identities = 71/251 (28%), Positives = 119/251 (47%), Gaps = 39/251 (15%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I NL Y LK++S + + V ++G +G+GKSTL++ + +VEPT GS++
Sbjct: 1 IEVENLSKTYPNGKK-ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 1322 IDNVDITKIG---LHDLRSRLGIIPQDPTLFD----------------GTVRGNLDPLVQ 1362
ID DI K+ L LR ++G+I Q L + T R L L
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRS-LFGLFP 118
Query: 1363 YSDKQV-WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILV 1421
+KQ AL++ L D + ++L S GQ+Q + R L+++ +++
Sbjct: 119 KEEKQRALAALERVGLLDKAYQRADQL-----------SGGQQQRVAIARALMQQPKLIL 167
Query: 1422 LDEATASVDSATDGVIQKI---ISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEY 1477
DE AS+D A+ + + I++E + TV+ H++ + +D ++ L DGRI +
Sbjct: 168 ADEPVASLDPASSRQVMDLLKRINRE-EGITVIVSLHQVDLAREYADRIVGLKDGRIV-F 225
Query: 1478 DSPTKLLERED 1488
D P L E
Sbjct: 226 DGPPAELTDEV 236
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 2e-20
Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 14/129 (10%)
Query: 1303 STLIQAIFRIVEPTMGSIIIDNVDITKIG-LHDLRSRLGIIPQDPTLFDG-TVRGNLDPL 1360
STL++ I +++PT G+I++D D T + LR R+G++ QDP LF TVR NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1361 VQ--YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSS 1418
++ +D + EAL++ L D + E S GQ+Q + R LLKK
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKKPK 110
Query: 1419 ILVLDEATA 1427
+L+LDE TA
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 5e-20
Identities = 63/233 (27%), Positives = 109/233 (46%), Gaps = 27/233 (11%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I F N+ Y L+++S P + V + G +G+GKSTL++ I+ PT G I+
Sbjct: 2 IRFENVSKAYPG-GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 1322 IDNVDITKIGLHD---LRSRLGIIPQDPTLF-DGTVRGNLD-PL--VQYS----DKQVWE 1370
++ D++++ + LR ++G++ QD L D TV N+ PL + ++V E
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSE 120
Query: 1371 ALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD 1430
LD L RA +L S G++Q + R ++ + ++L+ DE T ++D
Sbjct: 121 VLDLVGLKHKARALPSQL-----------SGGEQQRVAIARAIVNQPAVLLADEPTGNLD 169
Query: 1431 SATDGVIQKIISQEFKDR--TVVTIAHRIHTVIDSDL-VLVLSDGRIAEYDSP 1480
I ++ +E TV+ H + V VL L DGR+ +S
Sbjct: 170 PDLSWEIMRLF-EEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221
|
Length = 223 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 6e-20
Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 24/223 (10%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ NL RY + L +S T G++G G+GK+TL++ + + P+ G+I
Sbjct: 1 LQLENLTKRYGKKR--ALDGVSLTLG-PGMYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLDPLV-------QYSDKQVWEALD 1373
ID D+ K LR R+G +PQ+ ++ TVR LD + + +V E L+
Sbjct: 58 IDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLE 116
Query: 1374 KCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT 1433
LGD ++K+ S S G R+ + + L+ SIL++DE TA +D
Sbjct: 117 LVNLGD---RAKKKIGS--------LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165
Query: 1434 DGVIQKIISQEFKDRTVVTIAHRIHTVIDS-DLVLVLSDGRIA 1475
+ ++S+ +DR V+ H + V + V VL+ G++
Sbjct: 166 RIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 6e-20
Identities = 67/234 (28%), Positives = 113/234 (48%), Gaps = 35/234 (14%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQS---- 703
P L+ I L ++ G + + G G GK++LL+ I G + G++ + G P +
Sbjct: 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGV 74
Query: 704 --------PWILTGNIRENILFGNQYDSC-KYDRTVEACALVKDFELFASGDLTEIGERG 754
PW N+++N+ FG Q K R A ++ L +R
Sbjct: 75 VFQNEGLLPWR---NVQDNVAFGLQLAGVEKMQRLEIA------HQMLKKVGLEGAEKRY 125
Query: 755 I-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--KSVLY 811
I +SGGQ+QR+ IARA+ + + LLD+PF A+DA T Q+ + L+ + ++ K VL
Sbjct: 126 IWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM-QTLLLKLWQETGKQVLL 184
Query: 812 VTHQVE---FLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGAHSQALES 862
+TH +E F+ A +++L+ GR E L N + G S++++S
Sbjct: 185 ITHDIEEAVFM-ATELVLLSPG-----PGRVVERLPLNFARRFVAGESSRSIKS 232
|
Length = 255 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 7e-20
Identities = 77/294 (26%), Positives = 126/294 (42%), Gaps = 41/294 (13%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
+D + L ++ G + + G GSGK++ L I I+ +G + I G
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRK 76
Query: 698 -AYVPQSPWILTG-----NIRENI-----LFGNQYDSCKYDRTVEACALVKDFELFASGD 746
YV Q G + ENI L G + K R E LV L D
Sbjct: 77 IGYVIQQ----IGLFPHLTVAENIATVPKLLGWDKERIK-KRADELLDLVG---L----D 124
Query: 747 LTEIGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCL-MGIL 804
+E +R + +SGGQ+QR+ +ARA+ D I L+D+PF A+D T QL ++ +
Sbjct: 125 PSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE 184
Query: 805 KDKSVLYVTHQV-EFLPAADIILVMENGRIAQAGRFEELLKQ--NIGFEVLVGAHSQALE 861
K++++VTH + E L AD I VM+ G I Q +E+L N E G + L
Sbjct: 185 LGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGESERGLR 244
Query: 862 SVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGGKLV 915
+ V + + + E + + + S + L + ++ G+ +
Sbjct: 245 LLSLVSVADAVRRGEPADGEPLLEGFVDRDAL-SDFLARGRSVLPVVDEDGRPL 297
|
Length = 309 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 9e-20
Identities = 61/220 (27%), Positives = 101/220 (45%), Gaps = 47/220 (21%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
L + L + G VA+ G G+GKS+LL C+ G ++ +G+V I GT
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 698 ----AYVPQSPWILTGNIR--ENILFG-----NQYDSC-----KYDRTVEACALVKDFEL 741
+ Q L + EN+L G + + S K ++ A A ++ L
Sbjct: 77 RRQIGMIFQQF-NLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEK-QRALAALERVGL 134
Query: 742 FASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLM 801
L + +R +SGGQ+QR+ IARA+ Q + L D+P +++D + Q +M
Sbjct: 135 -----LDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQ-----VM 184
Query: 802 GILKD------KSVLYVTHQVEF-LPAADIILVMENGRIA 834
+LK +V+ HQV+ AD I+ +++GRI
Sbjct: 185 DLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (238), Expect = 1e-19
Identities = 64/217 (29%), Positives = 116/217 (53%), Gaps = 12/217 (5%)
Query: 1288 GRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPT 1347
G K V T G S +F+ G I++D VDI L DLR+ I+ Q+P
Sbjct: 1251 GMKNVNEFSLTKEGGSGEDSTVFK----NSGKILLDGVDICDYNLKDLRNLFSIVSQEPM 1306
Query: 1348 LFDGTVRGNLDPLVQYSDKQ-VWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQL 1406
LF+ ++ N+ + + ++ V A + + + + K D+ V G++ S GQ+Q
Sbjct: 1307 LFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQR 1366
Query: 1407 FCLGRTLLKKSSILVLDEATASVDSATDGVIQKIIS--QEFKDRTVVTIAHRIHTVIDSD 1464
+ R LL++ IL+LDEAT+S+DS ++ +I+K I ++ D+T++TIAHRI ++ SD
Sbjct: 1367 IAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSD 1426
Query: 1465 LVLVLSD-----GRIAEYDSPTKLLEREDSFFSQLIK 1496
++V ++ + + + +LL +D + + +K
Sbjct: 1427 KIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVK 1463
|
Length = 1466 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 1e-19
Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 28/233 (12%)
Query: 1261 TISFHNLQIRYAEHLP---SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTM 1317
+I NL Y E P L N++ + VG++G TGSGKSTLIQ + +++PT
Sbjct: 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61
Query: 1318 GSIIIDNVDIT--KIGLHDLRSRLGIIPQDP--TLFDGTVRG-------NLDPLVQYSDK 1366
G IIID VDIT K+ L D+R ++G++ Q P LF+ T+ NL + +
Sbjct: 62 GKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIEN 121
Query: 1367 QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEAT 1426
+V A++ L E+ D + E S GQ++ + + + IL+LDE T
Sbjct: 122 RVKRAMNIVGL-----DYEDYKDKSPFE----LSGGQKRRVAIAGVVAMEPKILILDEPT 172
Query: 1427 ASVD-SATDGVIQKI--ISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIA 1475
A +D D ++ KI + +E+ T++ ++H + V +D ++V++ G+
Sbjct: 173 AGLDPKGRDEILNKIKELHKEYN-MTIILVSHSMEDVAKLADRIIVMNKGKCE 224
|
Length = 287 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 2e-19
Identities = 58/210 (27%), Positives = 105/210 (50%), Gaps = 27/210 (12%)
Query: 639 FSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKA 698
FS+ + LD + L + G +A+ G G+GK++L + G I++ +G++ ++G
Sbjct: 7 FSYKKGTE--ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI 64
Query: 699 ----------YVPQSP-WILTGN-IRENILFGNQYDSCKYDRTVEACALVKDFELFASGD 746
YV Q + L + +RE +L G + +A ++KD +L+A +
Sbjct: 65 KAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKE---LDAGNEQAETVLKDLDLYALKE 121
Query: 747 LTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK- 805
+++SGGQKQR+ IA A+ D+ + D+P S +D ++ + L+ L
Sbjct: 122 -----RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE--LIRELAA 174
Query: 806 -DKSVLYVTHQVEFLP-AADIILVMENGRI 833
K+V+ +TH EFL D +L++ NG I
Sbjct: 175 QGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 2e-19
Identities = 72/237 (30%), Positives = 122/237 (51%), Gaps = 12/237 (5%)
Query: 1258 DVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTM 1317
D+ T+ NL Y + V+ ++S + VG++G G+GK+T I +V P
Sbjct: 1 DMSTLVAENLAKSYKKRK--VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS 58
Query: 1318 GSIIIDNVDITKIGLHDLRSRLGI--IPQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDK 1374
G I++D+ DITK+ +H R+RLGI +PQ+ ++F TV N+ +++ +K + +A K
Sbjct: 59 GKILLDDEDITKLPMH-KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERK 117
Query: 1375 CQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATD 1434
+L L+ +E + + S G+R+ + R L ++LDE A VD
Sbjct: 118 EELDALL--EEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAV 175
Query: 1435 GVIQKIISQEFKDRTV-VTIA-HRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERED 1488
IQ+II KDR + V I H + +D D ++SDG++ SP +++ ED
Sbjct: 176 IDIQRIIK-HLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNED 231
|
Length = 243 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 3e-19
Identities = 62/240 (25%), Positives = 111/240 (46%), Gaps = 27/240 (11%)
Query: 1261 TISFHNLQIRYAEH--LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMG 1318
+S NL I Y L N+S + +G+VG +GSGKSTL + + + +P+ G
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 1319 SIIIDNVDITKIGLHDLRSR-LGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQL 1377
SI++D + R + ++ QDP +L+P + + + E L L
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPY-------SSLNPR-RTVGRILSEPLRPHGL 114
Query: 1378 GDLVRAKEEKLDSTVAENGENW--------SVGQRQLFCLGRTLLKKSSILVLDEATASV 1429
+ E LD ++ S GQRQ + R L+ + +L+LDE T+++
Sbjct: 115 SKSQQRIAELLDQV--GLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSAL 172
Query: 1430 DSATDGVIQKIISQEFKDR--TVVTIAHRIHTVID--SDLVLVLSDGRIAEYDSPTKLLE 1485
D + I ++ + K+R T + I+H + +++ D + V+ +G+I E PT+ L
Sbjct: 173 DVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIAVMDNGQIVE-IGPTEELL 230
|
Length = 252 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 8e-19
Identities = 68/216 (31%), Positives = 101/216 (46%), Gaps = 50/216 (23%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCI--LGEIQKMAGTVKISGTKAYVPQSPWIL 707
L GI L VK+G V I G GSGKS+LL CI L E +GT+ I G K +
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD--SGTIIIDGLKLTDDKKNIN- 72
Query: 708 TGNIRENI--------LFGNQYDSCKYDRTV-----EACALVK-----DFELFASGDLTE 749
+R+ + LF + TV A VK + E A L +
Sbjct: 73 --ELRQKVGMVFQQFNLFPH--------LTVLENITLAPIKVKGMSKAEAEERALELLEK 122
Query: 750 IG------ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI 803
+G +SGGQ+QR+ IARA+ + + L D+P SA+D +L + L +
Sbjct: 123 VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDP----ELVGEVL-DV 177
Query: 804 LKD-----KSVLYVTHQVEF-LPAADIILVMENGRI 833
+KD +++ VTH++ F AD ++ M++GRI
Sbjct: 178 MKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 1e-18
Identities = 63/227 (27%), Positives = 100/227 (44%), Gaps = 49/227 (21%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCI-----LGEIQKMAGTVKISGTKAYVP--- 701
L I L + +G A+ G G GKS+LL + L G V + G Y
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 702 ------------QSPWILTGNIRENILFGNQY----DSCKYDRTVEAC----AL---VKD 738
Q P G+I +N+ +G + + D VE AL VKD
Sbjct: 76 VLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKD 135
Query: 739 FELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKD 798
L A G +SGGQ+QR+ +ARA+ + ++ LLD+P SA+D + T ++
Sbjct: 136 -RLHALG-----------LSGGQQQRLCLARALANEPEVLLLDEPTSALDPIS-TAKIEE 182
Query: 799 CLMGILKDKSVLYVTH---QVEFLPAADIILVMENGRIAQAGRFEEL 842
+ + K+ +++ VTH Q + AD + NGR+ + G E++
Sbjct: 183 LIAELKKEYTIVIVTHNMQQAARV--ADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 1e-18
Identities = 57/265 (21%), Positives = 110/265 (41%), Gaps = 40/265 (15%)
Query: 610 LQEDEIQRDAVEYVPKGRSEFEVEVVN----GKFSWNPESSSPT--LDGIQLKVKRGMKV 663
L +++I R + V ++ + +D + ++ G +
Sbjct: 261 LGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETL 320
Query: 664 AICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENI--LFGNQY 721
+ G GSGKS+L + G + +G++ G + +R I +F + Y
Sbjct: 321 GLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGEL---RRLRRRIQMVFQDPY 377
Query: 722 DSCKYDRTV-----EACALVKDF----------ELFASGDLTEIGERGIN-----MSGGQ 761
S TV E + EL +L + ++ +SGGQ
Sbjct: 378 SSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELL---ELVGLPPEFLDRYPHELSGGQ 434
Query: 762 KQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK---SVLYVTHQVEF 818
+QR+ IARA+ + + +LD+P SA+D Q+ L+ L+++ + L+++H +
Sbjct: 435 RQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN--LLKDLQEELGLTYLFISHDLAV 492
Query: 819 LPA-ADIILVMENGRIAQAGRFEEL 842
+ AD + VM +GRI + G E++
Sbjct: 493 VRYIADRVAVMYDGRIVEEGPTEKV 517
|
Length = 539 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 1e-18
Identities = 64/239 (26%), Positives = 111/239 (46%), Gaps = 22/239 (9%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I F N+ +Y LK++S P + +VG GSGKST+ + + I + G I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDP-TLFDG-TVR-----GNLDPLVQYSDKQ--VWEAL 1372
+N IT LR +GI+ Q+P F G V+ G + V Y + V EAL
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEAL 127
Query: 1373 DKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSA 1432
Q+ L RA E S GQ+Q + L S+++LDEAT+ +D
Sbjct: 128 K--QVDMLERADYEP---------NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPD 176
Query: 1433 TDGVIQKIIS--QEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDS 1489
+ ++ + + T+++I H + +++D V+V++ G + + +PT++ + +
Sbjct: 177 ARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEE 235
|
Length = 269 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 1e-18
Identities = 59/232 (25%), Positives = 100/232 (43%), Gaps = 23/232 (9%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ NL Y + + ++S + G++G G+GK+T ++ + + PT G+
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLD--------PLVQYSDKQVWEAL 1372
I+ I R LG PQ LFD TVR +L P + ++V L
Sbjct: 61 INGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEI-KEEVELLL 118
Query: 1373 DKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSA 1432
L D K K T+ S G ++ L L+ S+L+LDE T+ +D A
Sbjct: 119 RVLGLTD----KANKRARTL-------SGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPA 167
Query: 1433 TDGVIQKIISQEFKDRTVVTIAHRIHTV-IDSDLVLVLSDGRIAEYDSPTKL 1483
+ I +I + K R+++ H + D + ++SDG++ SP +L
Sbjct: 168 SRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 1e-18
Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 38/218 (17%)
Query: 653 IQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK--------------- 697
+ L V+ G I G GSGKS+LL CI I+ +G V I G
Sbjct: 43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102
Query: 698 --AYVPQSPWILTG-NIRENILFG----NQYDSCKYDRTVEACALV--KDFELFASGDLT 748
+ V QS +L + EN+ FG + + +R EA LV + +E +L
Sbjct: 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDEL- 161
Query: 749 EIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD-- 806
SGG +QR+ +ARA+ D DI L+D+ FSA+D ++ +D L+ + +
Sbjct: 162 ---------SGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREM-QDELLRLQAELQ 211
Query: 807 KSVLYVTHQV-EFLPAADIILVMENGRIAQAGRFEELL 843
K+++++TH + E L D I +M++GR+ Q G EE+L
Sbjct: 212 KTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 84.0 bits (209), Expect = 1e-18
Identities = 48/192 (25%), Positives = 87/192 (45%), Gaps = 53/192 (27%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709
LDG+ L V+RG A+ G G+GKS+L+ + G + +G + + G K SP
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG-KEVSFASPR---- 70
Query: 710 NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINM----SGGQKQRI 765
+A GI M S G++Q +
Sbjct: 71 ---------------------DARRA------------------GIAMVYQLSVGERQMV 91
Query: 766 QIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--KSVLYVTHQV-EFLPAA 822
+IARA+ ++A + +LD+P +A+ +LFK ++ L+ +V++++H++ E A
Sbjct: 92 EIARALARNARLLILDEPTAALTPAEVERLFK--VIRRLRAQGVAVIFISHRLDEVFEIA 149
Query: 823 DIILVMENGRIA 834
D + V+ +GR+
Sbjct: 150 DRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 85.6 bits (213), Expect = 2e-18
Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 35/232 (15%)
Query: 1262 ISFHNLQIRYAEHLPS--VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
+ N+ Y + L++IS + + V +VG +G GKSTL++ I + PT G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1320 IIIDNVDITKIGLHDLRSRLGIIPQDPTLFD-GTVRGN--LDPLVQYSDK-----QVWEA 1371
+++D +T G + Q L TV N L +Q K + E
Sbjct: 61 VLVDGEPVT-----GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
Query: 1372 LDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDS 1431
L+ L A +L S G RQ L R L +L+LDE +++D+
Sbjct: 116 LELVGLSGFENAYPHQL-----------SGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 1432 ATDGVIQ----KIISQEFKDRTVVTIAHRIHTVID-SDLVLVLS--DGRIAE 1476
T +Q I + +TV+ + H I + +D V+VLS GRI
Sbjct: 165 LTREQLQEELLDIWRET--GKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 57/228 (25%), Positives = 107/228 (46%), Gaps = 26/228 (11%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ L Y L ++S T + + ++G +G GK+TL++ I + P G I+
Sbjct: 1 LELKGLSKTYGSVR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLD-PL-VQYSDKQVWEALDKCQLG 1378
ID D+T + R +G++ QD LF TV N+ L ++ K A + +L
Sbjct: 59 IDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVR-ELL 115
Query: 1379 DLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQ 1438
+LV E L+ E S GQ+Q L R L ++ S+L+LDE +++D+ ++
Sbjct: 116 ELVGL-EGLLNRYPHE----LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR 170
Query: 1439 KIISQEFKDR--TVVTIAH------RIHTVIDSDLVLVLSDGRIAEYD 1478
+ + + ++ T + + H + +D + V+++GRI +
Sbjct: 171 EELKELQRELGITTIYVTHDQEEALAL-----ADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 2e-18
Identities = 65/231 (28%), Positives = 101/231 (43%), Gaps = 53/231 (22%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
L + L++ +G VAI G G+GKS+LL + G + +G + +G +
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79
Query: 698 ----AYVPQSPWILTGNIR--ENILFGNQYDSCKYDRTVEACALVKDFELFASGD----- 746
+ Q L + EN+L G Y T + F LF+ D
Sbjct: 80 RRDIGMIFQQF-NLVPRLSVLENVLLG----RLGYTSTWRSL-----FGLFSKEDKAQAL 129
Query: 747 --LTEIG------ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKD 798
L +G +R +SGGQ+QR+ IARA+ Q I L D+P +++D + +
Sbjct: 130 DALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKK---- 185
Query: 799 CLMGILKD------KSVLYVTHQVEF-LPAADIILVMENGRIAQAGRFEEL 842
+M ILKD +V+ HQV+ AD I+ ++ GRI G EL
Sbjct: 186 -VMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 2e-18
Identities = 66/248 (26%), Positives = 118/248 (47%), Gaps = 22/248 (8%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I F N+ RY +V N++ + + ++G +GSGK+T ++ I R++EPT G I
Sbjct: 1 IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGN--LDP-LVQYSDKQVWEALDKCQL 1377
ID DI + +LR ++G + Q LF TV N L P L+++ +++ E D +L
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERAD--EL 117
Query: 1378 GDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVI 1437
LV + S GQ+Q + R L +L++DE ++D T +
Sbjct: 118 LALVGLDPAEF---ADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174
Query: 1438 QKIISQEFKD------RTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE-DS 1489
Q +EFK +T+V + H I +D + ++ +G I + +P ++L +
Sbjct: 175 Q----EEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPAND 230
Query: 1490 FFSQLIKE 1497
F ++ +
Sbjct: 231 FVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 85.6 bits (213), Expect = 2e-18
Identities = 65/225 (28%), Positives = 102/225 (45%), Gaps = 45/225 (20%)
Query: 647 SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK--------- 697
S L G+ L V G VA+ G G+GK++LL I+G + +G+++ G
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHER 72
Query: 698 -----AYVPQSPWI---LTGNIRENILFG--NQYDSCKYDRTVEACALVKDFELFASGDL 747
YVP+ I LT + EN+L G + + K +E +ELF L
Sbjct: 73 ARAGIGYVPEGRRIFPELT--VEENLLLGAYARRRA-KRKARLERV-----YELFP--RL 122
Query: 748 TEI-GERGINMSGGQKQRIQIARAVYQDADIYLLDDPF-----SAVDAHTGTQLFKDCLM 801
E + +SGG++Q + IARA+ + LLD+P V+ ++F+ +
Sbjct: 123 KERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE-----EIFE--AI 175
Query: 802 GILKDK--SVLYVTHQVEF-LPAADIILVMENGRIAQAGRFEELL 843
L+D+ ++L V F L AD V+E GR+ G ELL
Sbjct: 176 RELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 3e-18
Identities = 60/228 (26%), Positives = 100/228 (43%), Gaps = 44/228 (19%)
Query: 645 SSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------- 697
++ + L++ +G + + G GSGK++ + I I+ +G + I G
Sbjct: 12 GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPV 71
Query: 698 ------AYVPQSPWILTG-----NIRENI-----LFGNQYDSCKYDRTVEACALVKDFEL 741
YV Q G + ENI L + K + EL
Sbjct: 72 ELRRKIGYVIQQ----IGLFPHMTVEENIALVPKLLK--WPKEKIRERAD--------EL 117
Query: 742 FASGDLTEIGERG---INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKD 798
A L +SGGQ+QR+ +ARA+ D + L+D+PF A+D T QL ++
Sbjct: 118 LALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL-QE 176
Query: 799 CLMGILKD--KSVLYVTHQV-EFLPAADIILVMENGRIAQAGRFEELL 843
+ ++ K++++VTH + E AD I +M+NG I Q G +E+L
Sbjct: 177 EFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 3e-18
Identities = 66/232 (28%), Positives = 112/232 (48%), Gaps = 31/232 (13%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQS---- 703
L+ + L + G V + G G GK++LL+ I G + G+++++G + P +
Sbjct: 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGV 78
Query: 704 --------PWILTGNIRENILFGNQYDSC-KYDRTVEACALVKDFELFASGDLTEIGERG 754
PW+ N+ +N+ FG Q K R A ++ A L +
Sbjct: 79 VFQNEALLPWL---NVIDNVAFGLQLRGIEKAQRREIAH------QMLALVGLEGAEHKY 129
Query: 755 I-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--KSVLY 811
I +SGG +QR+ IARA+ + + LLD+PF A+DA T Q+ ++ L+ + ++ K VL
Sbjct: 130 IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM-QELLLDLWQETGKQVLL 188
Query: 812 VTHQV-EFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGAHSQALES 862
+TH + E L A ++V+ G GR E L + G S+A++S
Sbjct: 189 ITHDIEEALFLATRLVVLSPG----PGRVVERLPLDFARRYAAGEPSRAIKS 236
|
Length = 259 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 3e-18
Identities = 66/253 (26%), Positives = 117/253 (46%), Gaps = 29/253 (11%)
Query: 1263 SFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PTM 1317
S NL + Y +L +I+ R+ +G +G GKST ++ R+ +
Sbjct: 7 SVKNLNLWYGSK--QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVK 64
Query: 1318 GSIIIDNVDI----TKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALD 1373
G + ID +D+ T + L LR+++G++ Q P F ++ N V Y K A +
Sbjct: 65 GELDIDGIDVYSVDTNVVL--LRAKVGMVFQKPNPFPKSIYDN----VAYGPKLHGLAKN 118
Query: 1374 KCQLGDLVRAK------EEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATA 1427
K +L ++V E+L + ++ S GQ+Q C+ R + K ++L++DE +
Sbjct: 119 KKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCS 178
Query: 1428 SVDSATDGVIQKIISQEFKDR-TVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485
++D VI+ +I QE K T++ + H + SD V GRI EY++ ++ +
Sbjct: 179 ALDPVATNVIENLI-QELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237
Query: 1486 REDSFFSQLIKEY 1498
S K Y
Sbjct: 238 NPQ---SSKTKRY 247
|
Length = 251 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 4e-18
Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 21/185 (11%)
Query: 645 SSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------- 697
+ L+ I L V+ G +AI G G GKS+LL + I +GT+ G
Sbjct: 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPE 73
Query: 698 ------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIG 751
+Y Q+P + + +N++F Q + + DR A L+ F L + +
Sbjct: 74 AYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAA-ALDLLARFAL----PDSILT 128
Query: 752 ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK--SV 809
+ +SGG+KQRI + R + I LLD+ SA+D + ++ + ++++ +V
Sbjct: 129 KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI-EEMIHRYVREQNVAV 187
Query: 810 LYVTH 814
L++TH
Sbjct: 188 LWITH 192
|
Length = 223 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 4e-18
Identities = 69/214 (32%), Positives = 108/214 (50%), Gaps = 24/214 (11%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKA--------- 698
LD + L + G VA+ G GSGK++LL I G + +GT+ G A
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75
Query: 699 --YVPQSPWI---LTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGER 753
+V Q + +T + +N+ FG + + +R EA K EL L + +R
Sbjct: 76 VGFVFQHYALFRHMT--VFDNVAFGLRVKP-RSERPPEAEIRAKVHELLKLVQLDWLADR 132
Query: 754 GIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK---SV 809
+SGGQ+QR+ +ARA+ + + LLD+PF A+DA +L + + L D+ +
Sbjct: 133 YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR--WLRRLHDELHVTT 190
Query: 810 LYVTH-QVEFLPAADIILVMENGRIAQAGRFEEL 842
++VTH Q E L AD ++VM GRI Q G +E+
Sbjct: 191 VFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 4e-18
Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 32/210 (15%)
Query: 649 TLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK----------- 697
LD + L + G V + G G GK++ L I G + +G + I G
Sbjct: 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDI 74
Query: 698 AYVPQS----PWILTGNIRENILFG---NQYDSCKYDRTVEACALVKDFELFASGDLTEI 750
A V Q+ P + + +NI FG + + D V A + E +
Sbjct: 75 AMVFQNYALYPHM---TVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-------HLL 124
Query: 751 GERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DKS 808
+ +SGGQ+QR+ + RA+ ++ ++L+D+P S +DA Q+ + L + + +
Sbjct: 125 DRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAE-LKRLQQRLGTT 183
Query: 809 VLYVTH-QVEFLPAADIILVMENGRIAQAG 837
+YVTH QVE + AD I VM +G+I Q G
Sbjct: 184 TIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 5e-18
Identities = 63/222 (28%), Positives = 100/222 (45%), Gaps = 38/222 (17%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
L G+ L V+RG +AI G GSGKS+LL I+G ++ +G V I G
Sbjct: 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRL 75
Query: 698 ----AYVPQSPWILTG-NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGE 752
+ QS + + EN+ F + + + + L K L +G
Sbjct: 76 RRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEK---------LEAVGL 126
Query: 753 RGI------NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD 806
RG +SGG K+R+ +ARA+ D ++ L D+P + +D + D L+ LK
Sbjct: 127 RGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVI--DDLIRSLKK 184
Query: 807 K---SVLYVTHQVEF-LPAADIILVMENGRIAQAGRFEELLK 844
+ + + VTH ++ AD I V+ +G+I G EEL
Sbjct: 185 ELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 5e-18
Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 34/244 (13%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ NL Y LKNI+ + V ++G +G+GKSTL++ I R+VEP+ GSI+
Sbjct: 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 1322 IDNVDITKIGLHDLRS---RLGIIPQDPTLFD----------------GTVRGNLDPLVQ 1362
++ DITK+ LR R+G+I Q L + T R L +
Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSE 120
Query: 1363 YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVL 1422
++ AL++ L D + ++L S GQ+Q + R L ++ +++
Sbjct: 121 EDKERALSALERVGLADKAYQRADQL-----------SGGQQQRVAIARALAQQPDLILA 169
Query: 1423 DEATASVDSATDGVIQKI---ISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDS 1479
DE AS+D T + I++E ++ + +D ++ L G I +
Sbjct: 170 DEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229
Query: 1480 PTKL 1483
P++L
Sbjct: 230 PSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.6 bits (209), Expect = 7e-18
Identities = 64/253 (25%), Positives = 121/253 (47%), Gaps = 28/253 (11%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PT 1316
I N Y E +KN++ + ++G +G GK+TL+++I R+ +
Sbjct: 4 IEIENFSAYYGEK--KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRV 61
Query: 1317 MGSIIIDNVDI--TKIGLHDLRSRLGIIPQDPTLFDGTVRGNLD--PLVQYS------DK 1366
G I DI ++ + + R ++G++ Q PT F ++ N+ P + D+
Sbjct: 62 EGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDR 121
Query: 1367 QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEAT 1426
V E+L K L D V+ S + + G S GQ+Q C+ R L + +++LDE T
Sbjct: 122 IVEESLKKAALWDEVK-------SELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPT 174
Query: 1427 ASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485
+++D I+K++ + ++ T+V + H I I +D + + G + EY +++E
Sbjct: 175 SALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234
Query: 1486 REDSFFSQLIKEY 1498
R ++L +EY
Sbjct: 235 RPK---NKLTEEY 244
|
Length = 250 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 7e-18
Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 14/229 (6%)
Query: 1266 NLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNV 1325
NL RY + V+ +S + + VG++G G+GK+T I +V+P G I++D
Sbjct: 5 NLSKRYGKRK--VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQ 62
Query: 1326 DITKIGLHDLRSRLGII--PQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQLGDLVR 1382
DITK+ +H R+RLGI PQ+ ++F TV N+ +++ E +K L +L+
Sbjct: 63 DITKLPMHK-RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEK--LEELL- 118
Query: 1383 AKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIIS 1442
+E + + S G+R+ + R L L+LDE A VD IQKII
Sbjct: 119 -EEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKII- 176
Query: 1443 QEFKDRTV-VTIA-HRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERED 1488
+ KDR + V I H + + +D ++ +G++ +P ++ E
Sbjct: 177 KILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANEL 225
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 7e-18
Identities = 68/225 (30%), Positives = 104/225 (46%), Gaps = 43/225 (19%)
Query: 647 SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK--------- 697
L G+ L+V+RG VA+ G G+GK++LL I+G ++ +G + G
Sbjct: 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER 75
Query: 698 -----AYVPQSPWI---LTGNIRENILFG--NQYDSCKYDRTVEACALVKDFELFASGDL 747
AYVP+ I LT + EN+L G + D +R +E + +ELF L
Sbjct: 76 ARLGIAYVPEGRRIFPRLT--VEENLLLGAYARRDKEAQERDLE-----EVYELFP--RL 126
Query: 748 TE-IGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQ-LFKDCLMGILK 805
E +R +SGG++Q + IARA+ + LLD+P G + + +K
Sbjct: 127 KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSE------GLAPKIVEEIFEAIK 180
Query: 806 D------KSVLYVTHQVEF-LPAADIILVMENGRIAQAGRFEELL 843
+ ++L V F L AD V+ENGRI +G ELL
Sbjct: 181 ELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELL 225
|
Length = 237 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 84.0 bits (209), Expect = 9e-18
Identities = 63/234 (26%), Positives = 100/234 (42%), Gaps = 37/234 (15%)
Query: 1266 NLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNV 1325
L R+ + L ++S + + G++G G+GK+TL I + PT GS++ D
Sbjct: 5 GLTKRFGGLV--ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGE 62
Query: 1326 DITKIGLHDLRSRLGIIP--QDPTLFDG-TVRGNLDPLVQYS-----------------D 1365
DIT + H+ +RLGI Q P LF TV N+ Q
Sbjct: 63 DITGLPPHE-IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREAR 121
Query: 1366 KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEA 1425
++ E L++ L D D S GQ++ + R L +L+LDE
Sbjct: 122 ERAEELLERVGLAD-------LADRPAG----ELSYGQQRRLEIARALATDPKLLLLDEP 170
Query: 1426 TASVDSA-TDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGR-IAE 1476
A ++ T+ + + I + TV+ + H + V+ +D V VL GR IAE
Sbjct: 171 AAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAE 224
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 1e-17
Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 37/253 (14%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ + + VL++I+ + + V ++G +G GKSTL++ I + +PT G ++
Sbjct: 4 LEIEGVSKSFGGVE--VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLD---PLVQYSDK----QVWEALD 1373
+D +T G +G + Q+ L TV N+ L S + E L+
Sbjct: 62 LDGRPVTGPG-----PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLE 116
Query: 1374 KCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT 1433
L +L S G RQ + R L + +L+LDE ++D+ T
Sbjct: 117 LVGLAGFEDKYPHQL-----------SGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165
Query: 1434 DGVIQ----KIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGR---IAEYDSP-TKLL 1484
+Q ++ + +TV+ + H + + +D V+VLS+ E + +
Sbjct: 166 REELQDELLRLWEET--RKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPR 223
Query: 1485 EREDSFFSQLIKE 1497
R D F +L +E
Sbjct: 224 IRGDPEFLELREE 236
|
Length = 248 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 1e-17
Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 26/226 (11%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I NL + + VLK I T + V ++G +GSGKSTL++ I + EP G+II
Sbjct: 1 IEIKNLHKSFGDFH--VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 1322 IDNVDIT--KIGLHDLRSRLGIIPQDPTLFDG-TVRGN--LDPL-VQYSDKQVWEA---- 1371
ID + +T K +++LR ++G++ Q LF TV N L P+ V+ K E
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALE 118
Query: 1372 -LDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD 1430
L+K L +K D+ A+ S GQ+Q + R L +++ DE T+++D
Sbjct: 119 LLEKVGL-------ADKADAYPAQ----LSGGQQQRVAIARALAMNPKVMLFDEPTSALD 167
Query: 1431 SATDGVIQKIISQEFKD-RTVVTIAHRIHTVID-SDLVLVLSDGRI 1474
G + ++ ++ T+V + H + + +D V+ + DGRI
Sbjct: 168 PELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 1e-17
Identities = 67/225 (29%), Positives = 105/225 (46%), Gaps = 47/225 (20%)
Query: 647 SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK--------- 697
S L G+ L+V +G + G G GK++LL ++G + +G++++ G
Sbjct: 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHER 72
Query: 698 -----AYVPQSPWI---LTGNIRENILFGNQYDSCKYDRTVEACALVKD--FELFASGDL 747
AYVPQ I LT + EN+L G + D +ELF L
Sbjct: 73 ARAGIAYVPQGREIFPRLT--VEENLLTG-------LAALPRRSRKIPDEIYELFPV--L 121
Query: 748 TE-IGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHT-GTQ--LFKD---CL 800
E +G RG ++SGGQ+Q++ IARA+ + LLD+P T G Q + KD +
Sbjct: 122 KEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEP-------TEGIQPSIIKDIGRVI 174
Query: 801 MGILKDK--SVLYVTHQVEF-LPAADIILVMENGRIAQAGRFEEL 842
+ + ++L V ++F AD VME GR+ +G +EL
Sbjct: 175 RRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 1e-17
Identities = 72/210 (34%), Positives = 109/210 (51%), Gaps = 25/210 (11%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVP-------- 701
L G+ L +++G +++ G G GKS+LL+ I G Q +G V + G + P
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 702 QS----PWILTGNIRENILFGNQYDSCKYD-RTVEACALVKDFELFASGDLTEIGERGIN 756
Q+ PW+ +RENI D D E A+V+ E A LTE ++
Sbjct: 61 QNYSLLPWL---TVRENIALA--VDRVLPDLSKSERRAIVE--EHIALVGLTEAADKRPG 113
Query: 757 -MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK--SVLYVT 813
+SGG KQR+ IARA+ + LLD+PF A+DA T L ++ LM I ++ +VL VT
Sbjct: 114 QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNL-QEELMQIWEEHRVTVLMVT 172
Query: 814 HQV-EFLPAADIILVMENGRIAQAGRFEEL 842
H V E L +D ++++ NG A G+ E+
Sbjct: 173 HDVDEALLLSDRVVMLTNGPAANIGQILEV 202
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 42/215 (19%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
LD + +K+G + + G GSGKS+L ILG ++ +G++ G
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
Query: 698 ----AYVPQSPW-----ILTGNIRENIL--FGNQYDSCKYDRTVEACALVKDFELFASGD 746
V Q P +T I E I K + EA L L G
Sbjct: 81 RKEIQMVFQDPMSSLNPRMT--IGEQIAEPLRIHGKLSKKEARKEAVLL----LLVGVGL 134
Query: 747 LTEIGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQ---LFKDCLMG 802
E+ R + +SGGQ+QR+ IARA+ + + + D+P SA+D Q L K
Sbjct: 135 PEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK---- 190
Query: 803 ILKDK---SVLYVTHQVEFLPA-ADIILVMENGRI 833
L+++ ++L++TH + + AD + VM G+I
Sbjct: 191 -LQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 2e-17
Identities = 64/225 (28%), Positives = 103/225 (45%), Gaps = 39/225 (17%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
LDG+ L V RG +AI G GSGKS+LL ILG ++ G + I G
Sbjct: 24 LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83
Query: 698 ----AYVPQSPWILTG-NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGE 752
+ Q + + + EN+ F + + + + L+K L +G
Sbjct: 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMK---------LELVGL 134
Query: 753 RGIN-------MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK 805
RG +SGG ++R+ +ARA+ D ++ LD+P S +D + + D L+ L
Sbjct: 135 RGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVI--DELIRELN 192
Query: 806 DK---SVLYVTHQV-EFLPAADIILVMENGRIAQAGRFEELLKQN 846
D +V+ VTH + L AD + V+ +G++ G EELL +
Sbjct: 193 DALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASD 237
|
Length = 263 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 2e-17
Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 46/242 (19%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
L+ +S + V ++GR G+GK+TL++ I +V P G II D DIT + H+ R+
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE-RA 76
Query: 1338 RLGI--IPQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAE 1394
RLGI +P+ +F TV NL LG R +E + + E
Sbjct: 77 RLGIAYVPEGRRIFPRLTVEENL------------------LLGAYARRDKEAQERDLEE 118
Query: 1395 --------------NGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKI 1440
S G++Q+ + R L+ + +L+LDE + + I +
Sbjct: 119 VYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEA 178
Query: 1441 ISQEFKDRTVVTI---AHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIK 1496
I +E + +TI ++ +D VL +GRI + +LL D + +
Sbjct: 179 I-KELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD-----VRE 232
Query: 1497 EY 1498
Y
Sbjct: 233 AY 234
|
Length = 237 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 67/219 (30%), Positives = 101/219 (46%), Gaps = 42/219 (19%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-AYVP------- 701
LDG+ L +K G + G G GK++LL I G +G + + G +P
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVN 75
Query: 702 ---QS----PWILTGNIRENILFGNQYDSCKYD----RTVEACALVKDFELFASGDLTEI 750
Q+ P + + ENI FG + R EA LV+ L
Sbjct: 76 TVFQNYALFPHL---TVFENIAFGLRLKKLPKAEIKERVAEALDLVQ---------LEGY 123
Query: 751 GERGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI--LKDK 807
R + +SGGQ+QR+ IARA+ + + LLD+P A+D +L KD + + L+ +
Sbjct: 124 ANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDL----KLRKDMQLELKRLQKE 179
Query: 808 ---SVLYVTH-QVEFLPAADIILVMENGRIAQAGRFEEL 842
+ ++VTH Q E L +D I VM G+I Q G EE+
Sbjct: 180 LGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 2e-17
Identities = 52/216 (24%), Positives = 93/216 (43%), Gaps = 32/216 (14%)
Query: 1278 VLKNISCT-FPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLR 1336
L +S T PG ++G G+GKSTL++ + + P G I+ID + D
Sbjct: 23 ALDGVSLTVRPGEV-HALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL 81
Query: 1337 SR-LGIIPQDPTLFDG-TVRGNL---------DPLVQYSD--KQVWEALDKCQLGDLVRA 1383
+ + + Q+ +L +V N+ L+ ++ E L + L
Sbjct: 82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDT 141
Query: 1384 KEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSA-TDGVIQKIIS 1442
L S+ QRQ+ + R L + +L+LDE TA++ T+ + I
Sbjct: 142 LVGDL-----------SIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLI-- 188
Query: 1443 QEFKDR--TVVTIAHRIHTVID-SDLVLVLSDGRIA 1475
+ K + ++ I+HR+ V + +D + VL DGR+
Sbjct: 189 RRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 2e-17
Identities = 64/224 (28%), Positives = 100/224 (44%), Gaps = 43/224 (19%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCI--LGEIQKMAGTVKISGTKAY-------- 699
L GI L V++G V I G GSGKS+LL C+ L E G++ + G
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDS--GSITVDGEDVGDKKDILKL 75
Query: 700 ------VPQSPWI---LTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEI 750
V Q + LT + EN+ K + +A A K EL + +
Sbjct: 76 RRKVGMVFQQFNLFPHLT--VLENVTLA----PVKVKKLSKAEAREKALELL---EKVGL 126
Query: 751 GERG----INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD 806
++ +SGGQ+QR+ IARA+ D + L D+P SA+D +L + L +
Sbjct: 127 ADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDP----ELVGEVLDVMKDL 182
Query: 807 K----SVLYVTHQVEF-LPAADIILVMENGRIAQAGRFEELLKQ 845
+++ VTH++ F AD ++ M+ G+I + G EE
Sbjct: 183 AEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226
|
Length = 240 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 65/214 (30%), Positives = 92/214 (42%), Gaps = 36/214 (16%)
Query: 655 LKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG------TKAYVPQSPWILT 708
L V G VAI G G+GKS+LL+ I G +G + I+G A P S
Sbjct: 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQE 79
Query: 709 GN------IRENILFG-------NQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGI 755
N + +NI G N K + L F G+L
Sbjct: 80 NNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGL-AGFLKRLPGEL-------- 130
Query: 756 NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDA---HTGTQLFKDCLMGILKDKSVLYV 812
SGGQ+QR+ +AR + ++ I LLD+PFSA+D L + + ++L V
Sbjct: 131 --SGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQ--LCDERKMTLLMV 186
Query: 813 THQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845
TH E AD ++ ++NGRIA G +ELL
Sbjct: 187 THHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220
|
Length = 231 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 2e-17
Identities = 70/242 (28%), Positives = 120/242 (49%), Gaps = 36/242 (14%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PT 1316
I +L++ + + VL ++ P ++G +GSGKSTL++ R++E
Sbjct: 4 IEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARV 61
Query: 1317 MGSIIIDNVDITKIGLHDLRSRLGIIPQDP------TLFDGTVRG-NLDPLVQYS---DK 1366
G + +D DI K+ + +LR R+ ++ Q P ++F+ G L+ LV+ +
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE 121
Query: 1367 QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEAT 1426
+V AL+K QL D V+ ++LD+ + S GQ+Q C+ R L + +L+ DE T
Sbjct: 122 RVRWALEKAQLWDEVK---DRLDAPAGK----LSGGQQQRLCIARALAFQPEVLLADEPT 174
Query: 1427 ASVDSATDGVIQKIISQEFKDRTVVTIAH------RIHTVIDSDLVLVLSDGRIAEYDSP 1480
A++D I+ + + KD T+V + H RI SD V L G+I E+ P
Sbjct: 175 ANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARI-----SDYVAFLYKGQIVEW-GP 228
Query: 1481 TK 1482
T+
Sbjct: 229 TR 230
|
Length = 250 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 3e-17
Identities = 57/211 (27%), Positives = 99/211 (46%), Gaps = 25/211 (11%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL-- 1335
LK +S + + V +VG +GSGKSTL+ + + PT G + +D DI+K+ +L
Sbjct: 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAA 78
Query: 1336 --RSRLGIIPQDPTLFDG-TVRGNLD-PL----VQYSDKQVW--EALDKCQLGDLVRAKE 1385
R +G + Q L T N++ PL V +++ E L++ LGD +
Sbjct: 79 FRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYP 138
Query: 1386 EKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQ-- 1443
+L S GQ+Q + R L I++ DE T ++DS T + +++ +
Sbjct: 139 SEL-----------SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELN 187
Query: 1444 EFKDRTVVTIAHRIHTVIDSDLVLVLSDGRI 1474
+ T+V + H +D ++ L DG+I
Sbjct: 188 KEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 3e-17
Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 39/215 (18%)
Query: 643 PESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------ 696
+ + P +D + L V +G + G G+GK++ L + GE++ +GT I+G
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR 70
Query: 697 -KA-----YVPQS---PWILTGNIRENILFGNQYDSC------KYDRTVEACALVKDFEL 741
A Y PQ LT RE++ F K + E L++ L
Sbjct: 71 KAARQSLGYCPQFDALFDELTV--REHLRF-----YARLKGLPKSEIKEEVELLLRVLGL 123
Query: 742 FASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLM 801
+ +SGG K+++ +A A+ + LLD+P S +D + ++ D ++
Sbjct: 124 TDKAN-KRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW-DLIL 177
Query: 802 GILKDKSVLYVTHQ---VEFLPAADIILVMENGRI 833
+ K +S++ TH E L D I +M +G++
Sbjct: 178 EVRKGRSIILTTHSMDEAEAL--CDRIAIMSDGKL 210
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 4e-17
Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 10/213 (4%)
Query: 1268 QIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDI 1327
Q+ Y +L NIS + + + + G +G GKSTL++ + ++ PT G+++ + D+
Sbjct: 8 QVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDV 67
Query: 1328 TKIGLHDLRSRLGIIPQDPTLFDGTVRGNLD-PLVQYSDKQVWEALDKCQLGDLVRAKEE 1386
+ + R ++ Q P LF TV NL P + + D+ DL+ A+
Sbjct: 68 STLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRR-----PDRAAALDLL-ARFA 121
Query: 1387 KLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF- 1445
DS + +N S G++Q L R L IL+LDE T+++D + I+++I +
Sbjct: 122 LPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVR 181
Query: 1446 -KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAE 1476
++ V+ I H I +D V+ L G E
Sbjct: 182 EQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214
|
Length = 223 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 4e-17
Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 18/244 (7%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP---TMG 1318
+ F ++ Y + L +IS + P ++G GSGKST+ + I ++ P
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65
Query: 1319 SIIIDNVDITKIGLHDLRSRLGIIPQDP-TLFDGTVRGNLDPLVQYSDKQVWEALDKCQL 1377
I +D + +T + D+R ++GI+ Q+P F G G+ D ++ V + ++
Sbjct: 66 KITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGD-DVAFGLENRAV----PRPEM 120
Query: 1378 GDLVRAKEEKLDSTVAENGE--NWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG 1435
+VR + + E N S GQ+Q + L + I++LDE+T+ +D A
Sbjct: 121 IKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKE 180
Query: 1436 VIQKIISQEFKDR--TVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQ 1493
I K+I + K TV++I H I +D VLVL DG++ SP ++ + +
Sbjct: 181 QILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSKV-----E 235
Query: 1494 LIKE 1497
++KE
Sbjct: 236 MLKE 239
|
Length = 282 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 5e-17
Identities = 70/255 (27%), Positives = 115/255 (45%), Gaps = 38/255 (14%)
Query: 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSI 1320
I NL + + VLK IS + + V ++G +GSGKSTL++ + + EP GSI
Sbjct: 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 1321 IIDNVDIT-KIGLHDLRSRLGIIPQDPTLF-DGTVRGN--LDP-LVQYSDKQVWEA---- 1371
+D D+ K + LR ++G++ Q LF TV N L P V+ K EA
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKA--EAREKA 117
Query: 1372 ---LDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATAS 1428
L+K L D A +L S GQ+Q + R L +++ DE T++
Sbjct: 118 LELLEKVGLADKADAYPAQL-----------SGGQQQRVAIARALAMDPKVMLFDEPTSA 166
Query: 1429 VDSATDGVIQKIISQEFKD-RTVVTIAHRI---HTVIDSDLVLVLSDGRIAEYDSPTKLL 1484
+D G + ++ ++ T++ + H + V +D V+ + G+I E P +
Sbjct: 167 LDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV--ADRVIFMDQGKIIEEGPPEEFF 224
Query: 1485 -----EREDSFFSQL 1494
ER F S++
Sbjct: 225 DNPKSERTRQFLSKI 239
|
Length = 240 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 6e-17
Identities = 63/239 (26%), Positives = 106/239 (44%), Gaps = 28/239 (11%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
++ +++ Y HLP T P + V ++G +G+GKSTL+ I P G I+
Sbjct: 2 LALDDVRFSY-GHLPMRF---DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEIL 57
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLD-------PLVQYSDKQVWEALD 1373
I+ VD T + ++ Q+ LF TV N+ L ++V A
Sbjct: 58 INGVDHT--ASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAA 115
Query: 1374 KCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT 1433
+ L ++ +L S GQRQ L R L+++ IL+LDE +++D A
Sbjct: 116 QVGLAGFLKRLPGEL-----------SGGQRQRVALARCLVREQPILLLDEPFSALDPAL 164
Query: 1434 DGVIQKIISQ--EFKDRTVVTIAHRIHTVIDS-DLVLVLSDGRIAEYDSPTKLLEREDS 1489
+ ++SQ + + T++ + H D V+ L +GRIA S +LL + S
Sbjct: 165 RAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223
|
Length = 231 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 81.9 bits (202), Expect = 7e-17
Identities = 68/226 (30%), Positives = 105/226 (46%), Gaps = 21/226 (9%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK---------- 697
P L ++ +K G KV ICG GSGKSSL + G + I G
Sbjct: 35 PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94
Query: 698 ---AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEA--CALVKDFELFASGDLTE-IG 751
+ + Q P + +G+IR N+ + C DR EA A +K+ G L +
Sbjct: 95 SRLSIILQDPILFSGSIRFNL---DPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVT 151
Query: 752 ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLY 811
E G N S GQ+Q +ARA + + I ++D+ +++D T L K +M D++V+
Sbjct: 152 EGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK-VVMTAFADRTVVT 210
Query: 812 VTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIG-FEVLVGAH 856
+ H+V + AD++LV+ G + + E LL Q G F LV
Sbjct: 211 IAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRTD 256
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 7e-17
Identities = 61/252 (24%), Positives = 111/252 (44%), Gaps = 47/252 (18%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ N+ + + + +IS + V ++G +G GK+TL++ I +P+ G I+
Sbjct: 6 LEIRNVSKSFGDFT--AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLDPLVQY------------SDKQV 1368
+D DIT + + +G++ Q LF TV N V + +V
Sbjct: 64 LDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEEN----VAFGLKVRKKLKKAEIKARV 117
Query: 1369 WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATAS 1428
EAL+ L K +L S GQ+Q L R L+ + +L+LDE ++
Sbjct: 118 EEALELVGLEGFADRKPHQL-----------SGGQQQRVALARALVPEPKVLLLDEPLSA 166
Query: 1429 VDSATDGVIQKIISQEFKDR--TVVTIAHRIHTVID-------SDLVLVLSDGRIAEYDS 1479
+D+ ++K + + ++ T V + H D SD + V++DGRI + +
Sbjct: 167 LDAKLREQMRKELKELQRELGITFVYVTH------DQEEALAMSDRIAVMNDGRIEQVGT 220
Query: 1480 PTKLLEREDSFF 1491
P ++ ER + F
Sbjct: 221 PEEIYERPATRF 232
|
Length = 352 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 80.9 bits (201), Expect = 7e-17
Identities = 59/222 (26%), Positives = 105/222 (47%), Gaps = 29/222 (13%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
+L +S T P + V ++GR G+GK+TL++ I ++ P GSI D DIT + H+ R+
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE-RA 73
Query: 1338 RLGI--IPQDPTLFDG-TVRGNLDPLVQY--SDKQVWEALDKCQLGDLVRAKEEKLDSTV 1392
R GI +P+ +F TV NL L Y + L++ + +L +E+
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENLL-LGAYARRRAKRKARLER--VYELFPRLKERRKQ-- 128
Query: 1393 AENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQ------EFK 1446
S G++Q+ + R L+ + +L+LDE + G+ KI+ + E +
Sbjct: 129 --LAGTLSGGEQQMLAIARALMSRPKLLLLDEPSE-------GLAPKIVEEIFEAIRELR 179
Query: 1447 DR--TVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485
D T++ + ++ +D VL GR+ + +LL
Sbjct: 180 DEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 1e-16
Identities = 61/203 (30%), Positives = 93/203 (45%), Gaps = 40/203 (19%)
Query: 665 ICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG--------------N 710
+ G G GK++LL + G Q +G++ + G V P L
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGED--VTNVPPHLRHINMVFQSYALFPHMT 58
Query: 711 IRENILFGNQYD----SCKYDRTVEACALVKDFELFASGDLTEIGERG-INMSGGQKQRI 765
+ EN+ FG + + R +EA LV+ L E +R +SGGQ+QR+
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQ---------LEEFADRKPHQLSGGQQQRV 109
Query: 766 QIARAVYQDADIYLLDDPFSAVDAHTGTQL---FKDCL--MGILKDKSVLYVTH-QVEFL 819
+ARA+ I LLD+P SA+D Q+ K +GI + ++VTH Q E +
Sbjct: 110 ALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGI----TFVFVTHDQEEAM 165
Query: 820 PAADIILVMENGRIAQAGRFEEL 842
+D I +M G+IAQ G EE+
Sbjct: 166 TMSDRIAIMRKGKIAQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 1e-16
Identities = 60/209 (28%), Positives = 106/209 (50%), Gaps = 24/209 (11%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE--PTM-- 1317
I NL Y + LKNI+ + +G +G GKSTL++ R+ E P
Sbjct: 14 IQVRNLNFYYGKF--HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRA 71
Query: 1318 -GSIIIDNVDI--TKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDK-------- 1366
G I++D +I K + LR+++G++ Q PT F ++ N+ V+ +K
Sbjct: 72 EGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDE 131
Query: 1367 QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEAT 1426
+V AL K L + V+ K + ++G + S GQ+Q C+ R + + +L+LDE
Sbjct: 132 RVEWALTKAALWNEVKDK-------LHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPC 184
Query: 1427 ASVDSATDGVIQKIISQEFKDRTVVTIAH 1455
+++D + G I+++I++ +D TVV + H
Sbjct: 185 SALDPISTGRIEELITELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 1e-16
Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 30/203 (14%)
Query: 655 LKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKI-----SGTKAYV-PQSPWILT 708
L V G VAI G G+GKS+LL+ I G I+ +G++K+ +G Y P S
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78
Query: 709 GN------IRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGIN-MSGGQ 761
N +R+NI G + A K + + + +R +SGGQ
Sbjct: 79 NNLFAHLTVRQNIGLG-----LHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQ 133
Query: 762 KQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL------KDKSVLYVTHQ 815
+QR+ +AR + + I LLD+PFSA+D L ++ ++ ++ + +++L VTH
Sbjct: 134 RQRVALARCLVRPNPILLLDEPFSALD-----PLLREEMLALVKQLCSERQRTLLMVTHH 188
Query: 816 VEFLPA-ADIILVMENGRIAQAG 837
+ A A I V+ G+I
Sbjct: 189 LSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 1e-16
Identities = 70/236 (29%), Positives = 111/236 (47%), Gaps = 31/236 (13%)
Query: 1262 ISFHNLQIRYAEHLPSV--LKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
I N+ + + ++ L N+S P + GV+G +G+GKSTLI+ I + PT G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1320 IIIDNVDITKI---GLHDLRSRLGIIPQDPTLFDG-TVRGNLD-PLV------QYSDKQV 1368
+++D D+T + L R ++G+I Q L TV N+ PL +V
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARV 121
Query: 1369 WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATAS 1428
E L+ L D K D A S GQ+Q + R L +L+ DEAT++
Sbjct: 122 TELLELVGLSD-------KADRYPA----QLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 1429 VDSA-TDGVIQ--KIISQEFKDRTVVTIAHRIHTVIDS--DLVLVLSDGRIAEYDS 1479
+D A T +++ K I++E T+V I H + V+ D V V+ GR+ E +
Sbjct: 171 LDPATTRSILELLKDINRELG-LTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGT 224
|
Length = 343 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 1e-16
Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 44/226 (19%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG-------------- 695
++ L V+ G I G GSGKS+L+ + I+ G + + G
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 696 ---TKAYVPQS----PWILTGNIRENILFG----NQYDSCKYDRTVEACALV--KDFELF 742
+ V QS P + EN+ FG + + +R +EA LV + +
Sbjct: 104 RRKKISMVFQSFALLPHR---TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADK 160
Query: 743 ASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMG 802
+L SGG +QR+ +ARA+ D DI L+D+ FSA+D T++ +D L+
Sbjct: 161 YPNEL----------SGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM-QDELLE 209
Query: 803 ILKD--KSVLYVTHQV-EFLPAADIILVMENGRIAQAGRFEELLKQ 845
+ K+++++TH + E L D I +M++G I Q G EE+L
Sbjct: 210 LQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255
|
Length = 386 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 1e-16
Identities = 71/216 (32%), Positives = 109/216 (50%), Gaps = 27/216 (12%)
Query: 1279 LKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL--- 1335
L N+S P + GV+G +G+GKSTLI+ + + PT GS+I+D D+T + +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 1336 RSRLGIIPQDPTLFDG-TVRGNLD-PL------VQYSDKQVWEALDKCQLGDLVRAKEEK 1387
R ++G+I Q L TV GN+ PL ++V E L LGD K
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD-------K 133
Query: 1388 LDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKD 1447
DS + N S GQ+Q + R L +L+ DEAT+++D AT I +++ +E
Sbjct: 134 HDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELL-KEINR 188
Query: 1448 R---TVVTIAHRIHTVID-SDLVLVLSDGRIAEYDS 1479
R T++ I H + V D V V+S+G + E +
Sbjct: 189 RLGLTILLITHEMDVVKRICDCVAVISNGELIEQGT 224
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-16
Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 35/237 (14%)
Query: 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT 690
E+E V+ F + LD + L++ +G I G G+GKS+LL I + +G+
Sbjct: 3 ELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGS 62
Query: 691 VKISGTK----------------AYVPQSPWILTG-NIRENILFG----NQYDSCKYDRT 729
V + G + Q +L+ + EN+ F + R
Sbjct: 63 VFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRV 122
Query: 730 VEACALVKDFELFASGDLTEIGERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVD 788
E LV L++ +R +SGGQKQR+ IARA+ + I L D+ SA+D
Sbjct: 123 AELLELV---------GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALD 173
Query: 789 AHTGTQLFKDCLMGILK--DKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEEL 842
T TQ + L I + +++ +TH++E + D + V++ GR+ + G E+
Sbjct: 174 PET-TQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229
|
Length = 339 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 61/243 (25%), Positives = 105/243 (43%), Gaps = 42/243 (17%)
Query: 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT 690
E++ V+ F + L + L V +G I G G+GKS+L+ CI G + +G+
Sbjct: 3 ELKNVSKVFG-DTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 691 VKISGTK----------------AYVPQSPWILTG-NIRENILF----GNQYDSCKYDRT 729
V + GT + Q +L+ + EN+ + +R
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 730 VEACALVKDFELFASGDLTEIGERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVD 788
+E LV L + + +SGGQKQR+ IARA+ + + L D+ SA+D
Sbjct: 122 LELLELV---------GLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALD 172
Query: 789 AHTGTQ---LFKD--CLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEEL 842
T L +D +G+ +++ +TH++E + D + VME G + + G EE+
Sbjct: 173 PETTQSILALLRDINRELGL----TIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
Query: 843 LKQ 845
Sbjct: 229 FAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 2e-16
Identities = 66/253 (26%), Positives = 106/253 (41%), Gaps = 41/253 (16%)
Query: 1262 ISFHNLQIRYA--EHLPSVLKNISCT-FPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTM- 1317
+ NL + +A ++++S PG + +G+VG +GSGKSTL A+ ++
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPG-EILGIVGESGSGKSTLALALMGLLPEGGR 64
Query: 1318 ---GSIIIDNVDITKIGLHDLRS----RLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWE 1370
G +I+D D+ + ++R R+ +I QDP +L+P V Q+ E
Sbjct: 65 ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM-------TSLNP-VMTIGDQIRE 116
Query: 1371 ALDKCQLG--DLVRAKEEKLDSTVA-ENGEN-------WSVGQRQLFCLGRTLLKKSSIL 1420
AL G R + +L V + E S G RQ + L K +L
Sbjct: 117 ALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLL 176
Query: 1421 VLDEATASVDSATDGVIQKIISQEFKD------RTVVTIAHRIHTVID-SDLVLVLSDGR 1473
+ DE T +A D Q I KD V+ I H + V + +D V+V+ G
Sbjct: 177 IADEPT----TALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGE 232
Query: 1474 IAEYDSPTKLLER 1486
I E ++L
Sbjct: 233 IVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-16
Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 40/227 (17%)
Query: 644 ESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKA----- 698
+ + L+ + L+++RG + I G GSGKS+L + G + +G++ + G
Sbjct: 17 KFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKR 76
Query: 699 ---------YVPQSP-------WILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELF 742
V Q P + + E + S + L+ L
Sbjct: 77 AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAE-----LLDQVGLP 131
Query: 743 ASGDLTEIGERGINM-SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLM 801
S +R + SGGQ+QRI IARA+ + + +LD+P SA+D Q+ + L+
Sbjct: 132 PS-----FLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQIL-NLLL 185
Query: 802 GILKDK--SVLYVTHQ---VEFLPAADIILVMENGRIAQAGRFEELL 843
+ K++ + L+++H VE + D I VM+NG+I + G EELL
Sbjct: 186 ELKKERGLTYLFISHDLALVEHM--CDRIAVMDNGQIVEIGPTEELL 230
|
Length = 252 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 2e-16
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 20/218 (9%)
Query: 1292 VGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDG 1351
G++G G+GK+TL++ I ++ P G + ID VD + +R ++G++ + L+
Sbjct: 31 TGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPS-FVRRKIGVLFGERGLYAR 89
Query: 1352 -TVRGNL---DPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLF 1407
T R NL L S K++ K ++ +L K +L + +S G +Q
Sbjct: 90 LTARENLKYFARLNGLSRKEI-----KARIAELS--KRLQLLEYLDRRVGEFSTGMKQKV 142
Query: 1408 CLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQ-EFKDRTVVTIAHRIHTVID-SDL 1465
+ R L+ SILVLDE T+ +D T I Q + + R V+ +H + V D
Sbjct: 143 AIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR 202
Query: 1466 VLVLSDGRIAEYDSPTKLLER------EDSFFSQLIKE 1497
V+VL G + S L R E+ F L E
Sbjct: 203 VIVLHKGEVVLEGSIEALDARTVLRNLEEIFAFALKLE 240
|
Length = 245 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 4e-16
Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 39/215 (18%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYV--------P 701
L I ++ +G +V I G G+GKS+LL I G + +G VK++G A + P
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDP 102
Query: 702 QSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINM---- 757
+ LTG RENI E V + FA E+G+ I+
Sbjct: 103 E----LTG--RENIYLRGLILGLTRK---EIDEKVDEIIEFA-----ELGDF-IDQPVKT 147
Query: 758 -SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKD-CLMGI----LKDKSVLY 811
S G R+ + A + + DI LLD+ + DA F++ CL + K+K+++
Sbjct: 148 YSSGMYARLAFSVATHVEPDILLLDEVLAVGDAA-----FQEKCLERLNELVEKNKTIVL 202
Query: 812 VTHQVEFLP-AADIILVMENGRIAQAGRFEELLKQ 845
V+H + + D + +E+G+I G EE++
Sbjct: 203 VSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237
|
Length = 249 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 6e-16
Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 61/259 (23%)
Query: 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFR---IVE-- 1314
G IS +L + Y + LK I+ + ++G +G GKST ++ + R ++
Sbjct: 2 GKISVKDLDLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSV 59
Query: 1315 PTMGSIIIDNVDI--TKIGLHDLRSRLGIIPQDPTLFDGTVRGN---------------L 1357
G +++D DI + I ++ LR R+G++ Q P F ++ N L
Sbjct: 60 KIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKL 119
Query: 1358 DPLVQYSDKQ--VWEA----LDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGR 1411
D +V+ S K +W+ L K LG S GQ+Q C+ R
Sbjct: 120 DEIVEKSLKGAALWDEVKDRLKKSALG--------------------LSGGQQQRLCIAR 159
Query: 1412 TLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAH------RIHTVIDSDL 1465
L + +L++DE T+++D + I+++I + KD T+V + H RI SD
Sbjct: 160 ALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRI-----SDK 214
Query: 1466 VLVLSDGRIAEYDSPTKLL 1484
+G I E+ L
Sbjct: 215 TAFFLNGEIVEFGDTVDLF 233
|
Length = 250 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (194), Expect = 7e-16
Identities = 66/245 (26%), Positives = 110/245 (44%), Gaps = 26/245 (10%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PT 1316
I NL + Y E LKN+S P ++G +G GKST I+ + R+ +
Sbjct: 13 IKVENLNLWYGEK--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRI 70
Query: 1317 MGSIIIDNVDI--TKIGLHDLRSRLGIIPQDPTLFDGTVRGNL--DPLVQYSDKQ----- 1367
G + I+ DI + + +LR +G++ Q P F ++ N+ P + ++K+
Sbjct: 71 EGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGV 130
Query: 1368 VWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATA 1427
V AL L D ++L S + S GQ+Q C+ RTL K I++ DE T+
Sbjct: 131 VENALRSAALWDET---SDRLKSPAL----SLSGGQQQRLCIARTLAVKPKIILFDEPTS 183
Query: 1428 SVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE- 1485
++D + I+ +I KD T+V + H + SD G + E+ ++
Sbjct: 184 ALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243
Query: 1486 -REDS 1489
RE S
Sbjct: 244 PREKS 248
|
Length = 258 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 7e-16
Identities = 62/274 (22%), Positives = 118/274 (43%), Gaps = 42/274 (15%)
Query: 646 SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-------- 697
+ LDG+ L V+ G V + G G+GK++LL I G + AGTV ++G
Sbjct: 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARA 74
Query: 698 -----AYVPQSPWI-LTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIG 751
A VPQ + ++R+ + G ++D E + + +
Sbjct: 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVE-RAMERTGVAQFA 133
Query: 752 ERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVL 810
+R + ++SGG++QR+ +ARA+ Q + LLD+P +++D + + + + K+ +
Sbjct: 134 DRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAV 193
Query: 811 YVTHQVEFLPAA---DIILVMENGRIAQAGRFEELLKQNIGFEVLVGAHSQALESVLTVE 867
H ++ AA D ++++ +GR+ AG ++L + L +
Sbjct: 194 AAIHDLDL--AARYCDELVLLADGRVRAAGPPADVLT------------ADTLRAAFDAR 239
Query: 868 TSSRTSQDP-------TPESELNSDSTSNVKLVH 894
T+ T DP TP + + + VH
Sbjct: 240 TAVGT--DPATGAPTVTPLPDPDRTEAAADTRVH 271
|
Length = 402 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 8e-16
Identities = 57/237 (24%), Positives = 119/237 (50%), Gaps = 25/237 (10%)
Query: 1266 NLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PTMGSI 1320
+L I Y E + +IS ++G +G GKST +++I R+ + + G I
Sbjct: 26 DLSIYYGEK--RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI 83
Query: 1321 IIDNVDI--TKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYS--------DKQVWE 1370
+ + ++I + I + +LR +G++ Q P F ++ N+ ++Y+ D+ V E
Sbjct: 84 LYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEE 143
Query: 1371 ALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD 1430
+L K L D V+ + + + + S GQ+Q C+ RTL K ++L+LDE +++D
Sbjct: 144 SLTKAALWDEVKDR-------LHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALD 196
Query: 1431 SATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486
++ I+++I++ ++ +++ + H + + SD +G + EYD ++
Sbjct: 197 PISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253
|
Length = 268 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 9e-16
Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 48/227 (21%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCI-----LGEIQKMAGTVKISGTKAY----- 699
L I L + + A+ G G GKS+LL C+ L ++ G V + G Y
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82
Query: 700 ----------VPQSPWILTGNIRENILFG---NQYDSCKYDRTVEAC----AL---VKDF 739
V Q P +I +N+ +G + + D VE+ AL VKD
Sbjct: 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD- 141
Query: 740 ELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDC 799
+ + + +SGGQ+QR+ IARA+ ++ L+D+P SA+D T ++
Sbjct: 142 ---------RLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP-ISTLKIEE- 190
Query: 800 LMGILKDK-SVLYVTHQVEFLPAA---DIILVMENGRIAQAGRFEEL 842
L+ LK K +++ VTH ++ AA D G + + G +++
Sbjct: 191 LITELKKKYTIVIVTHNMQ--QAARVSDYTAFFYLGELVEFGPTDKI 235
|
Length = 253 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 1e-15
Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 16/205 (7%)
Query: 1294 VVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLF-DGT 1352
++G TGSGKS L++ I ++P G I+++ DIT L + + +PQ+ LF T
Sbjct: 30 ILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKRDISYVPQNYALFPHMT 87
Query: 1353 VRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKL--DSTVAENGENWSVGQRQLFCLG 1410
V N+ Y K+ DK ++ V E L D + E S G++Q +
Sbjct: 88 VYKNI----AYGLKKRKV--DKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIA 141
Query: 1411 RTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID----SDLV 1466
R L+ IL+LDE +++D T +++ + + + VT+ H H + +D V
Sbjct: 142 RALVVNPKILLLDEPFSALDVRTKEKLREELK-KIRKEFGVTVLHVTHDFEEAWALADKV 200
Query: 1467 LVLSDGRIAEYDSPTKLLEREDSFF 1491
++ +G++ + P ++ ++ + F
Sbjct: 201 AIMLNGKLIQVGKPEEVFKKPKNEF 225
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 1e-15
Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 40/203 (19%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709
+DG+ +K G + + G G GKS+L ILG + +G + G
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG-------------- 74
Query: 710 NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERG-INMSGGQKQRIQIA 768
++I + + +R +E V G E R +SGGQ+QRI IA
Sbjct: 75 ---KDITKLS--KEERRERVLELLEKV--------GLPEEFLYRYPHELSGGQRQRIGIA 121
Query: 769 RAVYQDADIYLLDDPFSAVDAHTGTQ---LFKDCLMGILKDK---SVLYVTHQVEFLPA- 821
RA+ + + + D+P SA+D Q L KD L+++ + L+++H + +
Sbjct: 122 RALALNPKLIVADEPVSALDVSVQAQILNLLKD-----LQEELGLTYLFISHDLSVVRYI 176
Query: 822 ADIILVMENGRIAQAGRFEELLK 844
+D I VM G+I + G EE+
Sbjct: 177 SDRIAVMYLGKIVEIGPTEEVFS 199
|
Length = 268 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 80.4 bits (198), Expect = 1e-15
Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 31/215 (14%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQK--MAGTVKISGTK-AYVP---QS 703
LD + L+++ G +A+ G G GK++LL I G ++ + G + I+ + P +
Sbjct: 21 LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80
Query: 704 PWILTGN--------IRENILFG----NQYDSCKYDRTVEACALVKDFELFASGDLTEIG 751
+L N + +N+ FG + +R +A LV L +
Sbjct: 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVG---------LGDAA 131
Query: 752 ER-GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDC--LMGILKDKS 808
+SGG +QRI IARA+ + D+ LLD+P SA+DA+ + ++ L L + +
Sbjct: 132 AHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELT 191
Query: 809 VLYVTH-QVEFLPAADIILVMENGRIAQAGRFEEL 842
+L VTH Q + L AD +M++GR+A G + L
Sbjct: 192 ILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (192), Expect = 1e-15
Identities = 61/234 (26%), Positives = 114/234 (48%), Gaps = 23/234 (9%)
Query: 1269 IRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS-----IIID 1323
+ + H VLKNI+ FP R+ ++G +G GKSTL++A+ R+ + G+ +++D
Sbjct: 10 VNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLD 69
Query: 1324 NVDITKIGLH--DLRSRLGIIPQDPTLFDGTVRGN-------LDPLVQYS-DKQVWEALD 1373
N +I L +LR R+G++ Q P F ++ N L Q D+ V ++L
Sbjct: 70 NENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLR 129
Query: 1374 KCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT 1433
+ L D V+ K +G S GQ+Q C+ R L + ++++DE +++D +
Sbjct: 130 QAALWDEVKDNLHK-------SGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVS 182
Query: 1434 DGVIQKIISQEFKDRTVVTIAHRIHTVI-DSDLVLVLSDGRIAEYDSPTKLLER 1486
I++++ + ++ T+ + H + SD L G + EY ++ R
Sbjct: 183 TMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR 236
|
Length = 251 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 76.6 bits (188), Expect = 2e-15
Identities = 53/203 (26%), Positives = 100/203 (49%), Gaps = 7/203 (3%)
Query: 1277 SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLR 1336
+ L NI+ P + +VG+ G GKS+L+ AI ++ G + N + ++ R
Sbjct: 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATR 74
Query: 1337 SR----LGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTV 1392
SR + Q P L + TV N+ ++ ++ D C L + + +
Sbjct: 75 SRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEI 134
Query: 1393 AENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD-SATDGVIQKIISQEFKD--RT 1449
E G N S GQRQ C+ R L + ++I+ LD+ +++D +D ++Q+ I + +D RT
Sbjct: 135 GERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRT 194
Query: 1450 VVTIAHRIHTVIDSDLVLVLSDG 1472
+V + H++ + +D ++ + DG
Sbjct: 195 LVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 2e-15
Identities = 129/558 (23%), Positives = 240/558 (43%), Gaps = 62/558 (11%)
Query: 325 INAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQ--RQWIFGARQ 382
+ AA GP LI+ F++ + K + L LA A++G +++ + +F
Sbjct: 34 VAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAA 93
Query: 383 LGL--RLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMFMLP 440
+G+ +LR ++ R+ L S+ Q G++I+ ++ D + I D Y + +
Sbjct: 94 VGVVQQLRTDVMDAALRQPL--SAFDTQP--VGQLISRVTNDTEVIRDL--YVTVVATVL 147
Query: 441 VQISL------AIYILRTNLGLGSLAALAATLTVMT----CNIPITRIQKRFQSKIMDAK 490
+L A++ L + L ++ A L VM + PI R R ++ + D
Sbjct: 148 RSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVR---RVRAYLADIN 204
Query: 491 DNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWGSPT 550
D +EV+ M ++ RF +++ + + ++LRL F P
Sbjct: 205 D----GFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDG-----FLLRPL 255
Query: 551 ---FISVVTFGACMLLGIQLTAG---RVLSALATFR-MLQDPIFNLPDLLSNIAQGKVSA 603
F +++ G ML G + VL A ++ L +P+ L S + Q V+
Sbjct: 256 LSLFSALILCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAG 315
Query: 604 DRIAAYLQEDEIQR--DAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGM 661
+R+ L + Q+ + + GR +++ N F++ ++ L I L V
Sbjct: 316 ERVFE-LMDGPRQQYGNDDRPLQSGR----IDIDNVSFAYRDDN--LVLQNINLSVPSRG 368
Query: 662 KVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-------------AYVPQSPWILT 708
VA+ G GSGKS+L S ++G G +++ G A V Q P +L
Sbjct: 369 FVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLA 428
Query: 709 GNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIA 768
N+ G + + +E L + G T +GE+G N+S GQKQ + +A
Sbjct: 429 DTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALA 488
Query: 769 RAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVM 828
R + Q I +LD+ + +D+ T Q + L + + +++ + H++ + AD ILV+
Sbjct: 489 RVLVQTPQILILDEATANIDSGT-EQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVL 547
Query: 829 ENGRIAQAGRFEELLKQN 846
G+ + G ++LL
Sbjct: 548 HRGQAVEQGTHQQLLAAQ 565
|
Length = 592 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-15
Identities = 60/231 (25%), Positives = 102/231 (44%), Gaps = 31/231 (13%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN---VDITKIGLHD 1334
L +IS + V ++G +G+GKSTL++ I + P G I ++ D++ + + D
Sbjct: 17 ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRD 76
Query: 1335 LRSRLGIIPQDPTLFDG-TVRGN---------LDPLVQYSDKQVWEALDKCQLGDLVRAK 1384
++G + Q LF TV N P +V E L QL L
Sbjct: 77 --RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRY 134
Query: 1385 EEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQE 1444
+L S GQRQ L R L + +L+LDE ++D+ +++ + ++
Sbjct: 135 PAQL-----------SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWL-RK 182
Query: 1445 FKDR---TVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDSFF 1491
DR T V + H ++ +D V+VL+ GRI + P ++ + S F
Sbjct: 183 LHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRF 233
|
Length = 345 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-15
Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 25/221 (11%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ ++L Y + VL +IS + G +G G+GK+T ++ I +++P G I
Sbjct: 1 LKTNDLTKTYGKKR--VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT 58
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNL---DPLVQYSDKQVWEALDKCQL 1377
D K + R+G + + P + T R NL L+ K++ E LD L
Sbjct: 59 FDGKSYQK--NIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGL 116
Query: 1378 GDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGV- 1436
D + K + S+G +Q + LL +L+LDE T +D DG+
Sbjct: 117 KDSAKKKVKGF-----------SLGMKQRLGIALALLGNPDLLILDEPTNGLD--PDGIK 163
Query: 1437 -IQKIISQEFKD-RTVVTIAHRIHTV-IDSDLVLVLSDGRI 1474
++++I TV+ +H + + +D + +++ G++
Sbjct: 164 ELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKL 204
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 2e-15
Identities = 54/216 (25%), Positives = 109/216 (50%), Gaps = 40/216 (18%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PT 1316
IS N+ I Y +KN+ C P K ++G +G GKST+++++ R+ +
Sbjct: 14 ISLQNVTISYGTF--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL 71
Query: 1317 MGSIIIDNVDI--TKIGLHDLRSRLGIIPQDPTLFDGTV-------------RGNLDPLV 1361
G ++ D D+ ++ ++R R+G++ Q P F ++ G++D LV
Sbjct: 72 KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELV 131
Query: 1362 QYSDKQ--VWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSI 1419
+ S ++ VW D+C+ +KL+ E+G + S GQ+Q C+ RT+ + +
Sbjct: 132 ERSLRKAAVW---DECK---------DKLN----ESGYSLSGGQQQRLCIARTIAIEPEV 175
Query: 1420 LVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAH 1455
+++DE +++D + I++ + + K+ T+V + H
Sbjct: 176 ILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTH 211
|
Length = 269 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 3e-15
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 23/127 (18%)
Query: 674 SSLLSCILGEIQKMAGTVKISGTK--------------AYVPQSPWILTGN-IRENILFG 718
S+LL I G +Q +GT+ + G V Q P + +REN+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 719 NQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIY 778
+ A ++ L D E +SGGQKQR+ IARA+ + +
Sbjct: 61 ----LRDKEADARAEEALERVGLPDFLDR----EPVGTLSGGQKQRVAIARALLKKPKLL 112
Query: 779 LLDDPFS 785
LLD+P +
Sbjct: 113 LLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 3e-15
Identities = 70/220 (31%), Positives = 100/220 (45%), Gaps = 38/220 (17%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG-EIQKMAGTVKISGTK----------- 697
L I L VK+G V + G G GK++LL I G E Q AGT+ G
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT-AGTIYQGGRDITRLPPQKRDY 78
Query: 698 AYVPQSPWILTGN--IRENILFG--NQYDSCKYDRTVEACALVKDFELFASGDLTEIGER 753
V QS + L N + +NI +G N+ R E V EL L +
Sbjct: 79 GIVFQS-YALFPNLTVADNIAYGLKNR----GMGRA-EVAERVA--ELLDLVGLPGSERK 130
Query: 754 GIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD------ 806
+SGGQ+QR+ +ARA+ + LLD+P SA+DA ++ L ++
Sbjct: 131 YPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDA-----RVREHLRTEIRQLQRRLG 185
Query: 807 KSVLYVTH-QVEFLPAADIILVMENGRIAQAGRFEELLKQ 845
+ + VTH Q E L AD I+VM +G I Q G +E+ +
Sbjct: 186 VTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (190), Expect = 3e-15
Identities = 62/224 (27%), Positives = 110/224 (49%), Gaps = 23/224 (10%)
Query: 1277 SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNV------DITKI 1330
++LK+I+ P G++G +GSGKSTL++ + R++E I +D DI +I
Sbjct: 24 AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQI 83
Query: 1331 GLHDLRSRLGIIPQDPTLFDG-TVRGNLD-PLVQYSDKQ-------VWEALDKCQLGDLV 1381
LR +G++ Q P F ++ N+ PL + K+ V E L K L V
Sbjct: 84 DAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV 143
Query: 1382 RAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKII 1441
++L+S ++ S GQ+Q + R L K +L++DE T+ +D I+K+I
Sbjct: 144 Y---DRLNSPASQ----LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI 196
Query: 1442 SQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484
++ + +V ++H V +D V L +G + E+ S ++
Sbjct: 197 TELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240
|
Length = 257 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 3e-15
Identities = 64/267 (23%), Positives = 122/267 (45%), Gaps = 43/267 (16%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRI--------V 1313
+S +L + Y + LK +S P + ++G +G GKST ++ + R+ +
Sbjct: 46 LSVEDLDVYYGDD--HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARI 103
Query: 1314 EPTMGSIIIDNVDITKIG--LHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEA 1371
+ GS+ +D DI + G L +LR R+G++ Q P F ++R N + Y ++ +
Sbjct: 104 D---GSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIREN----ISYGPRKHGD- 155
Query: 1372 LDKCQLGDLV-RAKEEKLDSTV-----------------AENGENWSVGQRQLFCLGRTL 1413
++ L L+ R ++ D V +N S GQ+Q C+ R L
Sbjct: 156 INTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCL 215
Query: 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTV--IDSDLVLVLSD 1471
++++DE +++D I+ +I + ++ TVV + H + I + L+
Sbjct: 216 AVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTG 275
Query: 1472 GRIAEYDSPTKLLEREDSFFSQLIKEY 1498
G + EYD K+ E + SQ +++Y
Sbjct: 276 GELVEYDDTDKIFENPE---SQRVEDY 299
|
Length = 305 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 4e-15
Identities = 59/211 (27%), Positives = 99/211 (46%), Gaps = 36/211 (17%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSP----- 704
LDG+ L V+ G A+ G G+GKS+L+ + G +G + I G K SP
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDG-KPVAFSSPRDALA 82
Query: 705 ---WI----------LTGNIRENILFGNQYDSCKY--DR---TVEACALVKDFELFASGD 746
L+ + ENI G + DR A L+ L D
Sbjct: 83 AGIATVHQELSLVPNLS--VAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPD 140
Query: 747 LTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD 806
T +G ++S Q+Q ++IARA+ DA + +LD+P +A+ +LF L+ LK
Sbjct: 141 -TLVG----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD--LIRRLKA 193
Query: 807 K--SVLYVTHQVEFLPA-ADIILVMENGRIA 834
+ +++Y++H+++ + AD I V+ +GR+
Sbjct: 194 QGVAIIYISHRLDEVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 4e-15
Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 29/228 (12%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I F N+ Y + L I+ + + V +VG +G+GKSTL++ I++ PT G+I
Sbjct: 1 IEFINVTKTYPNGTAA-LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 1322 IDNVDITKIGLHD-----LRSRLGIIPQDPTLF-DGTVRGNLD-PLV------QYSDKQV 1368
++ D++ L LR ++G++ QD L D V N+ L + K+V
Sbjct: 60 VNGQDVS--DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRV 117
Query: 1369 WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATAS 1428
AL+ L RA +L S G++Q + R ++ +IL+ DE T +
Sbjct: 118 PAALELVGLSHKHRALPAEL-----------SGGEQQRVAIARAIVNSPTILIADEPTGN 166
Query: 1429 VDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID--SDLVLVLSDGRI 1474
+D T I ++ + K T V +A ++D V+ L G++
Sbjct: 167 LDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 4e-15
Identities = 67/234 (28%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
+EV N F + + TL+ + VK+G ++I G GSGKS+ + I G ++ +G +
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 692 KISGTK-------------AYVPQSP--WILTGNIRENILFG--NQ---YDSCKYDRTVE 731
I G V Q+P + + +++ FG N+ ++ K +R E
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMK-ERVNE 123
Query: 732 ACALVKDFELFASGDLTEIGERG-INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAH 790
A LV + + ER +SGGQKQR+ IA AV I +LD+ S +D
Sbjct: 124 ALELV---------GMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPE 174
Query: 791 TGTQLFKDCLMGILKDK--SVLYVTHQVEFLPAADIILVMENGRIAQAGRFEEL 842
+L K + GI D +V+ +TH ++ + +D +LVM+NG++ EL
Sbjct: 175 GRLELIK-TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 4e-15
Identities = 65/243 (26%), Positives = 119/243 (48%), Gaps = 31/243 (12%)
Query: 1262 ISFHNLQIRYAEHLPS-VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSI 1320
I NL +Y E L ++S + + ++G GSGKST ++ I ++E G I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1321 IIDNVDITKIGLHDLRSRLGIIPQDP-------TLFDGTVRGNLDPLVQYSD--KQVWEA 1371
IID +T+ + D+R ++G++ Q+P T+ D G + + + + ++V EA
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 1372 LDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDS 1431
L+ + D + +L S GQ+Q + + + I++LDEAT+ +D
Sbjct: 125 LELVGMQDFKEREPARL-----------SGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 1432 ATDG---VIQKIISQEFKDR---TVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLE 1485
+G +I+ I + +D TV++I H + V SD VLV+ +G++ +P +L
Sbjct: 174 --EGRLELIKTI--KGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFS 229
Query: 1486 RED 1488
R +
Sbjct: 230 RGN 232
|
Length = 279 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 4e-15
Identities = 59/223 (26%), Positives = 103/223 (46%), Gaps = 27/223 (12%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG---TK------- 697
+DG+ KV+ G G G+GK++ + + ++ +GT +++G +
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRR 66
Query: 698 --AYVPQSPW---ILTGNIRENI-LFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIG 751
VPQ LTG REN+ + G Y K + A L++ FEL + D
Sbjct: 67 SIGIVPQYASVDEDLTG--RENLEMMGRLYGLPKDEAEERAEELLELFELGEAAD----- 119
Query: 752 ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK-DKSVL 810
SGG ++R+ IA ++ D+ LD+P + +D T + D + + + ++L
Sbjct: 120 RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI-WDYIRALKEEGVTIL 178
Query: 811 YVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQNIGFEVL 852
TH +E D I ++++GRI G EE LK+ +G + L
Sbjct: 179 LTTHYMEEADKLCDRIAIIDHGRIIAEGTPEE-LKRRLGKDTL 220
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 4e-15
Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 28/205 (13%)
Query: 1259 VGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMG 1318
I+ NL +R + +L ++ +++ + G +G+GK++L++A+ + G
Sbjct: 390 DHGITLENLSLRTPDGQT-LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSG 448
Query: 1319 SIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL---DPLVQYSDKQVWEALDKC 1375
I + S L +PQ P L GT+R L + +SD ++ L K
Sbjct: 449 RISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKV 497
Query: 1376 QLGDLVRAKEEKLDSTVAENGENW----SVGQRQLFCLGRTLLKKSSILVLDEATASVDS 1431
LGDL +E+ W S G++Q R LL K + LDEAT+++D
Sbjct: 498 GLGDLAERLDEEDR---------WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548
Query: 1432 ATDGVIQKIISQEFKDRTVVTIAHR 1456
T+ + +++ +E D TV+++ HR
Sbjct: 549 ETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 5e-15
Identities = 64/275 (23%), Positives = 122/275 (44%), Gaps = 53/275 (19%)
Query: 1252 PPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFR 1311
P+ I +L + Y + L ++S P + ++G +G GKST ++ I R
Sbjct: 30 DPAASSGETVIEARDLNVFYGDE--QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINR 87
Query: 1312 IVEPTMGSIIIDNVDITKI---------GLHD-------LRSRLGIIPQDPTLFDGTVRG 1355
+ D +D ++ ++D LR R+G++ Q P F ++
Sbjct: 88 MN---------DLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYD 138
Query: 1356 NLDPLVQY----------SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405
N V Y D++V E+L + L D V +++LDS+ G + S GQ+Q
Sbjct: 139 N----VAYGLKIQGYDGDIDERVEESLRRAALWDEV---KDQLDSS----GLDLSGGQQQ 187
Query: 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTV--IDS 1463
C+ R + ++++DE +++D I+ +I + ++ TVV + H + I
Sbjct: 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISD 247
Query: 1464 DLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEY 1498
+ L+ G + E+D K+ E + SQ +++Y
Sbjct: 248 KTAVFLTGGELVEFDDTDKIFENPE---SQRVEDY 279
|
Length = 285 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 5e-15
Identities = 69/209 (33%), Positives = 103/209 (49%), Gaps = 18/209 (8%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-----------A 698
L+ I L + G VA+ G GSGK++LL I G + +G ++ GT
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG 77
Query: 699 YVPQSPWILTG-NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGER-GIN 756
+V Q + + +NI FG + +R A K +L L + +R
Sbjct: 78 FVFQHYALFRHMTVFDNIAFGLTVLP-RRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQ 136
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFK--DCLMGILKDKSVLYVTH 814
+SGGQKQR+ +ARA+ + I LLD+PF A+DA +L + L LK SV +VTH
Sbjct: 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSV-FVTH 195
Query: 815 -QVEFLPAADIILVMENGRIAQAGRFEEL 842
Q E + AD ++VM G I QAG +++
Sbjct: 196 DQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 6e-15
Identities = 44/197 (22%), Positives = 81/197 (41%), Gaps = 21/197 (10%)
Query: 1265 HNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN 1324
N+ Y + +L ++S + + + G+ G+GK+TL + + +++ + GSI+++
Sbjct: 3 ENISFSY-KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 1325 VDITKIGLHDLRSRLGIIPQDPT--LFDGTVRGNLDP-LVQYSDK--QVWEALDKCQLGD 1379
I + R +G + QD LF +VR L L + Q L L
Sbjct: 62 KP---IKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA 118
Query: 1380 LVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQK 1439
L L S GQ+Q + LL +L+ DE T+ +D + +
Sbjct: 119 LKERHPLSL-----------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE 167
Query: 1440 IISQEFK-DRTVVTIAH 1455
+I + + V+ I H
Sbjct: 168 LIRELAAQGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 7e-15
Identities = 59/250 (23%), Positives = 112/250 (44%), Gaps = 43/250 (17%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PT 1316
+S NL + Y E L +I+ + P + ++G +G GKSTL++ R+ +
Sbjct: 7 LSTKNLNLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRI 64
Query: 1317 MGSIIIDNVDITKIGLH--DLRSRLGIIPQDPTLFDGTV---------------RGNLDP 1359
G I+ + +I G LR ++G++ Q P F ++ + LD
Sbjct: 65 TGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDT 124
Query: 1360 LVQYSDKQ--VWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKS 1417
+V+ S K +W+ + K+ DS ++ +G GQ+Q C+ RTL
Sbjct: 125 IVEKSLKGAALWDEV-----------KDRLHDSALSLSG-----GQQQRLCIARTLAVNP 168
Query: 1418 SILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAE 1476
++++DE +++D I+ +I K+ TV+ + H + SD + G++ E
Sbjct: 169 EVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIE 228
Query: 1477 YDSPTKLLER 1486
+D T++ E
Sbjct: 229 FDKTTQIFEN 238
|
Length = 253 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 8e-15
Identities = 69/244 (28%), Positives = 112/244 (45%), Gaps = 24/244 (9%)
Query: 1261 TISFHNLQIRYAEHLP---SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTM 1317
+I F N+ Y+ P L NIS V +VG TGSGKSTL+Q +++P+
Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61
Query: 1318 GSIIIDNVDIT----KIGLHDLRSRLGIIPQDP--TLFDGTVRGNLDPLVQYSDKQVWEA 1371
G+I I IT L LR ++ ++ Q P LF+ TV + V++ K +
Sbjct: 62 GTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKD----VEFGPKNFGFS 117
Query: 1372 LDKCQLGDLVRAKEEKLDSTVAENGE-NWSVGQRQLFCLGRTLLKKSSILVLDEATASVD 1430
D+ + L K+ L + S GQ + + + + IL LDE A +D
Sbjct: 118 EDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLD 177
Query: 1431 SATDGVIQKIISQEFKD-----RTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484
+K + Q FKD TV+ + H + V + +D VLVL G++ ++ SP ++
Sbjct: 178 PEG----RKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF 233
Query: 1485 ERED 1488
++
Sbjct: 234 SDKE 237
|
Length = 287 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 9e-15
Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 20/210 (9%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKA-----YVPQSP 704
+ + + + G + G G+GK++LL I + +G V I G +V +
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77
Query: 705 WILTG--------NIRENIL-FGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGI 755
+L G REN+ F + + L K +L L + R
Sbjct: 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQL-----LEYLDRRVG 132
Query: 756 NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQ 815
S G KQ++ IARA+ D I +LD+P S +D T + + ++V++ +H
Sbjct: 133 EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHI 192
Query: 816 VEFLPA-ADIILVMENGRIAQAGRFEELLK 844
++ + A D ++V+ G + G E L
Sbjct: 193 MQEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 9e-15
Identities = 63/269 (23%), Positives = 119/269 (44%), Gaps = 45/269 (16%)
Query: 1265 HNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN 1324
NL + Y +L ++S + P K ++G G GKSTL++ R++ P G++ + +
Sbjct: 6 ENLTVGYGTK--RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGD 63
Query: 1325 VDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLDPLVQY--------------SDKQ-V 1368
I+ + L RL ++PQ +G TVR LV Y D V
Sbjct: 64 KPISMLSSRQLARRLALLPQHHLTPEGITVR----ELVAYGRSPWLSLWGRLSAEDNARV 119
Query: 1369 WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATAS 1428
+A+++ ++ L + L S GQRQ L L + + +++LDE T
Sbjct: 120 NQAMEQTRINHLADRRLTDL-----------SGGQRQRAFLAMVLAQDTPVVLLDEPTTY 168
Query: 1429 VDSATDGVIQKIISQEFKD--RTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485
+D + +++ +E +TVVT+ H ++ D ++VL++G + +P
Sbjct: 169 LDINHQVELMRLM-RELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTP----- 222
Query: 1486 REDSFFSQLIKE-YSMRSQNFNS-VAGRP 1512
E+ L++ + + ++ V+G P
Sbjct: 223 -EEVMTPGLLRTVFDVEAEIHPEPVSGTP 250
|
Length = 255 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 1e-14
Identities = 57/241 (23%), Positives = 108/241 (44%), Gaps = 33/241 (13%)
Query: 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSI 1320
I +L + + + +VL + + VG+VG G+GK+TL++AI + PT G++
Sbjct: 3 MIDVSDLSVEFGDT--TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60
Query: 1321 IIDNVDITKIGLHDLRSRLGIIPQDPTL-FDGTVR-----------GNLDPLVQYSDKQV 1368
++ D+ + R+ +PQD +L F+ VR D + V
Sbjct: 61 LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAV 120
Query: 1369 WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATAS 1428
A+++ + + + + S S G+RQ L R L + + +L+LDE TAS
Sbjct: 121 ERAMER---TGVAQFADRPVTSL--------SGGERQRVLLARALAQATPVLLLDEPTAS 169
Query: 1429 VD----SATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKL 1483
+D T ++++++ +T V H + D +++L+DGR+ P +
Sbjct: 170 LDINHQVRTLELVRRLVDD---GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226
Query: 1484 L 1484
L
Sbjct: 227 L 227
|
Length = 402 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-14
Identities = 62/202 (30%), Positives = 97/202 (48%), Gaps = 28/202 (13%)
Query: 655 LKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-AYVPQSPWILTGNIRE 713
L +G AI G GSGKS+LL+ I G +G V I+G P + ++ +E
Sbjct: 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78
Query: 714 NILFGNQYDSCKYDRTVE---ACALVKDFELFA------SGDLTEIGERGI------NMS 758
N LF + TVE L +L A L +G G+ +S
Sbjct: 79 NNLFAHL--------TVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELS 130
Query: 759 GGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK--SVLYVTHQV 816
GG++QR+ +AR + +D + LLD+PF+A+D ++ D ++ + + +VL VTHQ
Sbjct: 131 GGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEML-DLVLDLHAETKMTVLMVTHQP 189
Query: 817 E-FLPAADIILVMENGRIAQAG 837
E A ++ ++NGRIA G
Sbjct: 190 EDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 1e-14
Identities = 63/259 (24%), Positives = 110/259 (42%), Gaps = 33/259 (12%)
Query: 605 RIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNP-----------ESSSPTLDGI 653
RI L++ E + V +G+ GK + L +
Sbjct: 283 RIKR-LEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDL 341
Query: 654 QLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK--AYVPQ--SPWILTG 709
++ RG ++AI G G+GKS+LL + GE+ ++GTVK+ T Y Q
Sbjct: 342 SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDK 401
Query: 710 NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIAR 769
+ E + + E A + F F +G+ + + +SGG+K R+ +A+
Sbjct: 402 TVLEELS-----EGFPDGDEQEVRAYLGRF-GF-TGE--DQEKPVGVLSGGEKARLLLAK 452
Query: 770 AVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--KSVLYVTHQVEFLPA-ADIIL 826
+ Q ++ LLD+P + +D + L + L D +VL V+H FL A I
Sbjct: 453 LLLQPPNLLLLDEPTNHLDIESLEALEE-----ALLDFEGTVLLVSHDRYFLDRVATRIW 507
Query: 827 VMENGRIAQAGRFEELLKQ 845
++E+ G +E+ L+Q
Sbjct: 508 LVEDKVEEFEGGYEDYLEQ 526
|
Length = 530 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-14
Identities = 64/227 (28%), Positives = 103/227 (45%), Gaps = 46/227 (20%)
Query: 652 GIQLKVKRGMKVAICGTVGSGKSSLLSCILG---------EIQKMAGTVKISG------- 695
L ++ G + G GSGKS+LL + G ++ G+V ++
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 696 -----TKAYVPQS----PWILTGNIRENILFGNQY----DSCKYDRTVEACALVKDFELF 742
+ V Q PW + EN+ FG + + + R E LV
Sbjct: 102 RLRTHRVSMVFQQFALLPWR---TVEENVAFGLEMQGMPKAERRKRVDEQLELV------ 152
Query: 743 ASGDLTEIGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLM 801
L + +R +SGG +QR+ +ARA +A I L+D+PFSA+D TQL +D L+
Sbjct: 153 ---GLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQL-QDELL 208
Query: 802 GILK--DKSVLYVTHQV-EFLPAADIILVMENGRIAQAGRFEELLKQ 845
+ K++++V+H + E L + I +ME GRI Q G EE++
Sbjct: 209 ELQSKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 1e-14
Identities = 54/212 (25%), Positives = 105/212 (49%), Gaps = 24/212 (11%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRI--VEPTM-- 1317
I NL + + +LKN++ P ++G +G GKST I+ + R+ + P
Sbjct: 4 IEVENLNTYFDDA--HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH 61
Query: 1318 -GSIIIDNVDI--TKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQ--------YSDK 1366
G I +D VDI + + +LR ++G++ Q P F ++ N+ ++ + ++
Sbjct: 62 EGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEE 121
Query: 1367 QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEAT 1426
+V E+L L D V ++KLD + S GQ+Q C+ RT+ ++++DE
Sbjct: 122 RVEESLKAAALWDEV---KDKLDKSAL----GLSGGQQQRLCIARTIAVSPEVILMDEPC 174
Query: 1427 ASVDSATDGVIQKIISQEFKDRTVVTIAHRIH 1458
+++D + I+ +I + +D T+V + H +
Sbjct: 175 SALDPISTTKIEDLIHKLKEDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 1e-14
Identities = 52/227 (22%), Positives = 103/227 (45%), Gaps = 29/227 (12%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ N+ R+ + L +IS + + G++G G+GK+T I+ I I+ P G ++
Sbjct: 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLF-DGTVRGNLDPLVQ-------YSDKQVWEALD 1373
D + R+R+G +P++ L+ V L L Q + +++ E L+
Sbjct: 59 FDGKPLD----IAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLE 114
Query: 1374 KCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT 1433
+ +L + + E+L S G +Q ++ +L+LDE + +D
Sbjct: 115 RLELSEYANKRVEEL-----------SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN 163
Query: 1434 DGVIQKIISQEFKD--RTVVTIAHRIHTVID-SDLVLVLSDGRIAEY 1477
+++ +I +E +TV+ H++ V + D VL+L+ GR Y
Sbjct: 164 VELLKDVI-RELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 1e-14
Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 48/213 (22%)
Query: 640 SWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG--EIQKMAGTVKISGTK 697
S +S L + K K G AI G G+GKS+LL+ + G ++G V I+G
Sbjct: 15 SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP 74
Query: 698 ----------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDL 747
YVPQ ++IL TV L +FA+
Sbjct: 75 LDKRSFRKIIGYVPQ----------DDILHPTL--------TVRE-TL-----MFAA--- 107
Query: 748 TEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD- 806
++ RG+ SGG+++R+ IA + + + LD+P S +D+ + Q+ L +
Sbjct: 108 -KL--RGL--SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMS-LLRRLADTG 161
Query: 807 KSVLYVTHQV--EFLPAADIILVMENGRIAQAG 837
++++ HQ E D +L++ GR+ G
Sbjct: 162 RTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 1e-14
Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 35/211 (16%)
Query: 649 TLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG------------- 695
L G+ L + +G VAI G+ GSGKS+LL + G +G V +G
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 696 ----TKAYVPQSPWILTG-NIRENI----LFGNQYDSCKYDRTVEACALVKDFELFASGD 746
++ Q +L EN+ L G + + A +++ L
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKK---SVKEAKERAYEMLEKVGL---EH 133
Query: 747 LTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-- 804
I R +SGG++QR+ IARA+ + L D+P +D + +F LM L
Sbjct: 134 --RINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF--DLMLELNR 189
Query: 805 -KDKSVLYVTHQVEFLPAADIILVMENGRIA 834
+ S L VTH +E D +L M++G++
Sbjct: 190 ELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 2e-14
Identities = 64/261 (24%), Positives = 114/261 (43%), Gaps = 16/261 (6%)
Query: 644 ESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------- 696
E + L+ I + G +V + G GSGKS+LLS L + G ++I G
Sbjct: 14 EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGDIQIDGVSWNSVPL 72
Query: 697 ----KAY--VPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEI 750
KA+ +PQ +I +G R+N+ ++ + + E L E F +
Sbjct: 73 QKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVL 132
Query: 751 GERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVL 810
+ G +S G KQ + +AR+V A I LLD+P + +D T Q+ + L D +V+
Sbjct: 133 VDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT-YQVIRKTLKQAFADCTVI 191
Query: 811 YVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGAHSQALESVLTVETSS 870
H++E + LV+E ++ Q ++LL + F+ + + S L+ +S
Sbjct: 192 LSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAI-SPSDRLKLFPRRNSSK 250
Query: 871 RTSQDPTPESELNSDSTSNVK 891
+ L ++ V+
Sbjct: 251 SKRKPRPQIQALQEETEEEVQ 271
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 2e-14
Identities = 50/218 (22%), Positives = 90/218 (41%), Gaps = 61/218 (27%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ + R+ L +S + + ++G G+GKSTL++ + + +P G I+
Sbjct: 1 LELRGITKRFGGVK--ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLV 1381
+D +++ D R R GI V Y QL
Sbjct: 59 VDGKEVSFASPRDAR-RAGI---------AMV---------Y------------QL---- 83
Query: 1382 RAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSA-TDGVIQKI 1440
SVG+RQ+ + R L + + +L+LDE TA++ A + + + I
Sbjct: 84 ------------------SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVI 125
Query: 1441 ISQEFKDR--TVVTIAHRIHTVID-SDLVLVLSDGRIA 1475
+ + + V+ I+HR+ V + +D V VL DGR+
Sbjct: 126 --RRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 58/214 (27%), Positives = 92/214 (42%), Gaps = 53/214 (24%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYV--------P 701
L + +V RG ++ + G G+GKS+LL + G +GTV + G + + P
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNP 97
Query: 702 QSPWILTGNIRENILFG-------NQYDSCKYDRTVEACALVKDFELFASGDLTEIGERG 754
+ LTG RENI + K D +E +E+G+
Sbjct: 98 E----LTG--RENIYLNGRLLGLSRKEIDEKIDEIIE---------------FSELGDF- 135
Query: 755 INM-----SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKD-C---LMGILK 805
I++ S G K R+ A A + DI L+D+ + DA F++ C L +LK
Sbjct: 136 IDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAA-----FQEKCQRRLRELLK 190
Query: 806 D-KSVLYVTHQVEFLPA-ADIILVMENGRIAQAG 837
K+V+ V+H + D LV+E G+I G
Sbjct: 191 QGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-14
Identities = 62/207 (29%), Positives = 100/207 (48%), Gaps = 28/207 (13%)
Query: 1294 VVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL----RSRLGIIPQDPTLF 1349
++G +GSGKST ++ + R++EPT G I ID +I K +L R ++G++ Q LF
Sbjct: 24 IMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83
Query: 1350 DG-TVRGN--LDPLVQYSDKQVWE--ALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQR 1404
T+ N L P + +Q + AL+ +L L EE E S G +
Sbjct: 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGL----EEYEHRYPDE----LSGGMQ 135
Query: 1405 QLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKD------RTVVTIAHRIH 1458
Q L R L + IL++DEA SA D +I+ + E K +T+V I H +
Sbjct: 136 QRVGLARALAAEPDILLMDEAF----SALDPLIRDSMQDELKKLQATLQKTIVFITHDLD 191
Query: 1459 TVID-SDLVLVLSDGRIAEYDSPTKLL 1484
I D ++++ G I + +P ++L
Sbjct: 192 EAIRIGDRIVIMKAGEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-14
Identities = 81/318 (25%), Positives = 135/318 (42%), Gaps = 35/318 (11%)
Query: 653 IQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIR 712
L + +G I G GSGKS+ + + I+ AG + I G + QSP L R
Sbjct: 12 ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENI-MKQSPVELREVRR 70
Query: 713 ENILFGNQYDSCKYDRTV-EACALV-------------KDFELFASGDLTEIGERGIN-M 757
+ I Q + T+ + +L K EL L E R + +
Sbjct: 71 KKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDEL 130
Query: 758 SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--KSVLYVTHQ 815
SGG +QR+ +ARA+ + DI L+D+ FSA+D + +D L + K+++++TH
Sbjct: 131 SGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSM-QDELKKLQATLQKTIVFITHD 189
Query: 816 V-EFLPAADIILVMENGRIAQAGRFEELLKQ--NIGFEVLVGAHSQALESVLTVETSSRT 872
+ E + D I++M+ G I Q G +E+L+ N E +G L V E ++
Sbjct: 190 LDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIG--KVDLSQVFDAERIAQR 247
Query: 873 SQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGGKLVQ-------EEEREKGSI 925
T +D L + E SL + ++ KLV ++ R+K
Sbjct: 248 M--NTGPITKTADKGPRSALQLMR--DERVDSLYVVDRQNKLVGVVDVESIKQARKKAQG 303
Query: 926 GKEVYWSYLTAVKGGALV 943
++V + V G L+
Sbjct: 304 LQDVLIDDIYTVDAGTLL 321
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.6 bits (183), Expect = 2e-14
Identities = 59/235 (25%), Positives = 112/235 (47%), Gaps = 25/235 (10%)
Query: 1266 NLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PTMGSI 1320
NL + Y E L +I+ K ++G +G GKST ++ + R+ + G +
Sbjct: 9 NLNLWYGEK--QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEV 66
Query: 1321 IIDNVDI--TKIGLHDLRSRLGIIPQDPTLFDGTVRGNL--DPLV------QYSDKQVWE 1370
++D +I + + +LR R+G++ Q P F ++ N+ P + + DK V
Sbjct: 67 LLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEW 126
Query: 1371 ALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD 1430
AL K L D V K++ S + +G GQ+Q C+ RT+ K ++++DE T+++D
Sbjct: 127 ALKKAALWDEV--KDDLKKSALKLSG-----GQQQRLCIARTIAVKPDVILMDEPTSALD 179
Query: 1431 SATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484
+ I+ ++ + K+ T+V + H + SD G + E++ K+
Sbjct: 180 PISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234
|
Length = 251 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 3e-14
Identities = 69/285 (24%), Positives = 116/285 (40%), Gaps = 48/285 (16%)
Query: 599 GKVSADR-IAAYLQEDEIQR--------DAVEYVPKGRSEFEVEVVNGKFSWNPESSSPT 649
G+V R AA EDE+ R D P+ V V S
Sbjct: 221 GRVVGTRPTAAETSEDELVRLMVGRELEDLFPEPPEEGIGEPVLEVRN------LSGGGK 274
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
+ + V+ G + I G VG+G++ L + G +G + + G
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334
Query: 698 --AYVP----QSPWILTGNIRENILFGN-QYDSCK--YDRTVE---ACALVKDFELFASG 745
AYVP +L +I ENI + + S + DR E A ++ +
Sbjct: 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394
Query: 746 DLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL- 804
IG +SGG +Q++ +AR + D + +LD+P +D ++++ L+ L
Sbjct: 395 PEQPIG----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYR--LIRELA 448
Query: 805 -KDKSVLYVTHQV-EFLPAADIILVMENGRIAQAGRFEELLKQNI 847
+ K++L ++ ++ E L +D ILVM GRI EE ++ I
Sbjct: 449 AEGKAILMISSELPELLGLSDRILVMREGRIVGELDREEATEEAI 493
|
Length = 500 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (181), Expect = 3e-14
Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 23/222 (10%)
Query: 1279 LKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE--PTM---GSIIIDNVDITKIGLH 1333
LK IS + V +G +G GKST ++ R+ + P G I ID +I G+
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 1334 --DLRSRLGIIPQDPTLFDGTVRGNLDPLVQ--------YSDKQVWEALDKCQLGDLVRA 1383
+LR +G++ Q P F ++ N+ ++ + ++V E L L D V+
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD 138
Query: 1384 KEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQ 1443
K + E+ S GQ+Q C+ R + S+L++DE +++D + ++++I +
Sbjct: 139 K-------LKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191
Query: 1444 EFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484
KD T+V + H + SD G + EYD K+
Sbjct: 192 LKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233
|
Length = 250 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 4e-14
Identities = 60/236 (25%), Positives = 100/236 (42%), Gaps = 49/236 (20%)
Query: 647 SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG----EIQKMAGTVKISGTK----- 697
P + + +V+ G + I G GSGKS+L ++G + +G V + G
Sbjct: 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLS 81
Query: 698 ------------AYVPQSPW-----ILT-GN-IRE-NILFGNQYDSCKYDRTVEACALV- 736
A + Q P ++T G+ IRE L G + R VE V
Sbjct: 82 EREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVG 141
Query: 737 ----KDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTG 792
+ + + L SGG +QR+ IA A+ + + D+P +A+D T
Sbjct: 142 LPDPERRDRYPH-QL----------SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQ 190
Query: 793 TQLFKDCLMGILKDK--SVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELLKQ 845
Q+ D L + ++ +VL++TH + + AD ++VM G I + G EE+L
Sbjct: 191 AQIL-DLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 4e-14
Identities = 65/231 (28%), Positives = 98/231 (42%), Gaps = 53/231 (22%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
L I L + G VAI G G+GKS+LL CI ++ +G++ + GT
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 698 ----AYVPQSPWILTGN--IRENILFGNQYDSCKYDRTVEACALVKDFELFASGD----- 746
+ Q + L + EN+L G Y T + F+ D
Sbjct: 78 RRRIGMIFQH-YNLIERLTVLENVLHG----RLGYKPTWRSL-----LGRFSEEDKERAL 127
Query: 747 --LTEIG------ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKD 798
L +G +R +SGGQ+QR+ IARA+ Q D+ L D+P +++D T Q
Sbjct: 128 SALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ---- 183
Query: 799 CLMGILKD------KSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEEL 842
+M LK +V+ HQV+ AD I+ ++ G I G EL
Sbjct: 184 -VMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-14
Identities = 61/215 (28%), Positives = 105/215 (48%), Gaps = 30/215 (13%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG---TK--------- 697
++G+ L VK+G V + G G+GK++ I+G ++ +G + + G TK
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75
Query: 698 --AYVPQSPWILTG-NIRENIL--FGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGE 752
Y+PQ I + ENIL + S K R + L+++F +T + +
Sbjct: 76 GIGYLPQEASIFRKLTVEENILAVLEIRGLSKKE-REEKLEELLEEF------HITHLRK 128
Query: 753 R-GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK--SV 809
++SGG+++R++IARA+ + LLD+PF+ VD + K ++ ILKD+ V
Sbjct: 129 SKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQK--IIKILKDRGIGV 186
Query: 810 LYVTHQV-EFLPAADIILVMENGRIAQAGRFEELL 843
L H V E L D ++ G++ G EE+
Sbjct: 187 LITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 4e-14
Identities = 59/227 (25%), Positives = 107/227 (47%), Gaps = 29/227 (12%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I FHN+ Y + + L ++S + + + G +G+GK+TL++ ++ + P+ G +
Sbjct: 2 IEFHNVSKAYPGGVAA-LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 1322 IDNVDITKIGLHD-----LRSRLGIIPQDPTLF-DGTVRGNLD-PL-VQYSD-----KQV 1368
I D+ + L LR R+G++ QD L D TV N+ PL V+ ++V
Sbjct: 61 IAGEDVNR--LRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRV 118
Query: 1369 WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATAS 1428
AL + L A E+L S G++Q + R ++ +L+ DE T +
Sbjct: 119 GAALRQVGLEHKADAFPEQL-----------SGGEQQRVAIARAIVNSPPLLLADEPTGN 167
Query: 1429 VDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID--SDLVLVLSDGR 1473
+D I ++ + K T V +A +++D + V++L DGR
Sbjct: 168 LDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 5e-14
Identities = 57/225 (25%), Positives = 95/225 (42%), Gaps = 46/225 (20%)
Query: 1261 TISFHNLQIRYAEHLPS-----VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAI--FRIV 1313
T+SF NL + + PS +LKN+S + ++G +G+GKSTL+ A+ R
Sbjct: 3 TLSFRNLTV-TVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTG 61
Query: 1314 EPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALD 1373
G ++I+ + R +G +PQD L L V E L
Sbjct: 62 LGVSGEVLING---RPLDKRSFRKIIGYVPQDDILH-----PTL---------TVRETLM 104
Query: 1374 KCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT 1433
AK L S G+R+ + L+ S+L LDE T+ +DS++
Sbjct: 105 -------FAAKLRGL-----------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS 146
Query: 1434 DGVIQKIISQEFKD-RTVVTIAHRIHTVIDS--DLVLVLSDGRIA 1475
+ ++ + RT++ H+ + I D +L+LS GR+
Sbjct: 147 ALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 6e-14
Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 10/189 (5%)
Query: 1291 KVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFD 1350
V ++G +G+GKSTL+ I +EP GSI +++ T GL + + ++ Q+ LF
Sbjct: 26 IVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHT--GLAPYQRPVSMLFQENNLFA 83
Query: 1351 G-TVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCL 1409
TVR N+ + K A + ++ D A++ + + E S GQRQ L
Sbjct: 84 HLTVRQNIGLGLHPGLK--LNAEQQEKVVDA--AQQVGIADYLDRLPEQLSGGQRQRVAL 139
Query: 1410 GRTLLKKSSILVLDEATASVDSATDGVIQKIISQ--EFKDRTVVTIAHRIHTVIDS-DLV 1466
R L++ + IL+LDE +++D + ++ Q + RT++ + H + +
Sbjct: 140 ARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQI 199
Query: 1467 LVLSDGRIA 1475
V+S G+I
Sbjct: 200 AVVSQGKIK 208
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 6e-14
Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 19/178 (10%)
Query: 655 LKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK----------AYVPQSP 704
V G A+ G GSGKS+L ++G ++ +G + I G AYVPQS
Sbjct: 28 FTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSE 87
Query: 705 ---WILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGI-NMSGG 760
W + + ++ G +Y + R + A D+ E R I +SGG
Sbjct: 88 EVDWSFPVLVEDVVMMG-RYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGG 146
Query: 761 QKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--KSVLYVTHQV 816
QK+R+ +ARA+ Q + LLD+PF+ VD T ++ L+ L+D K++L TH +
Sbjct: 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIIS--LLRELRDEGKTMLVSTHNL 202
|
Length = 272 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 6e-14
Identities = 67/228 (29%), Positives = 105/228 (46%), Gaps = 46/228 (20%)
Query: 646 SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCI--LGEIQKMAGTVKISGTKAYVPQS 703
+ L I L + +G V I G GSGKS+LL CI L EI +G + + G K
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT--SGDLIVDGLKV---ND 67
Query: 704 PWILTGNIR-------------------ENILFGNQYDSCKYDRTVEACALVKDFELFAS 744
P + IR EN++FG V A ++ E A
Sbjct: 68 PKVDERLIRQEAGMVFQQFYLFPHLTALENVMFG--------PLRVRG-ASKEEAEKQAR 118
Query: 745 GDLTEIG--ERG----INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKD 798
L ++G ER +SGGQ+QR+ IARA+ + L D+P SA+D ++ K
Sbjct: 119 ELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLK- 177
Query: 799 CLMGILKDK--SVLYVTHQVEFL-PAADIILVMENGRIAQAGRFEELL 843
+M L ++ +++ VTH++ F A ++ ++ GRIA+ G + L+
Sbjct: 178 -VMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224
|
Length = 240 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 7e-14
Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 33/223 (14%)
Query: 1294 VVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDG-T 1352
++G +G GK+TL++ + +P GSI++D D+T + H LR + ++ Q LF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH-LRH-INMVFQSYALFPHMT 58
Query: 1353 VRGNLD-PLVQYS------DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405
V N+ L +V EAL QL + K +L S GQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQL-----------SGGQQQ 107
Query: 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDR------TVVTIAHRIHT 1459
L R L+ K IL+LDE SA D ++ + E K T V + H
Sbjct: 108 RVALARALVFKPKILLLDEPL----SALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEE 163
Query: 1460 VID-SDLVLVLSDGRIAEYDSPTKLLEREDSFFS-QLIKEYSM 1500
+ SD + ++ G+IA+ +P ++ E + F + I E ++
Sbjct: 164 AMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEINV 206
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 7e-14
Identities = 68/245 (27%), Positives = 111/245 (45%), Gaps = 52/245 (21%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG-------------T 696
LDG+ L ++ G +AI G G+GKS+LL + GE+ +G V ++G
Sbjct: 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH 76
Query: 697 KAYVPQ-SPWILTGNIRENILFG----NQYDSCKYDRTVEACALVKDFELFASGDLTEIG 751
+A +PQ S ++E + G + D + A AL A+ DL+ +
Sbjct: 77 RAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQAL-------AATDLSGLA 129
Query: 752 ERGINM-SGGQKQRIQIARAVYQ------DADIYLLDDPFSAVD-AHTGTQLFKDCLMGI 803
R SGG++QR+Q+AR + Q LD+P SA+D AH + +
Sbjct: 130 GRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHH------TLRL 183
Query: 804 LKD-----KSVLYVTHQVEFLPA--ADIILVMENGRIAQAGRFE-----ELLKQNIGFEV 851
+ +VL V H + L A AD I+++ GR+ +G + E L++ G ++
Sbjct: 184 ARQLAREGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQDVLTDETLERVYGADI 242
Query: 852 LVGAH 856
VG H
Sbjct: 243 RVGRH 247
|
Length = 259 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 7e-14
Identities = 65/242 (26%), Positives = 119/242 (49%), Gaps = 29/242 (11%)
Query: 1261 TISFHNLQIRYAEHLP---SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTM 1317
TI F N+ Y + P + +++ F K +VG+TGSGKSTLIQ I +++PT
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT 61
Query: 1318 GSIIIDNVDITKIG----LHDLRSRLGIIPQDP--TLFDGTVRGNLDPLVQYSDKQVWEA 1371
G++ +D++ IT + +R R+G++ Q P LF+ TV + + K
Sbjct: 62 GTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVERE----IIFGPKNFKMN 117
Query: 1372 LDKCQLGDLVRAKEEKL-------DSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDE 1424
LD+ V+ +L ++++ S GQ + + L I+VLDE
Sbjct: 118 LDE------VKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDE 171
Query: 1425 ATASVDSATDGVIQKIIS--QEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPT 1481
TA +D + + +++ Q +++T++ ++H ++ V +D V+V+ +G I SP
Sbjct: 172 PTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231
Query: 1482 KL 1483
+L
Sbjct: 232 EL 233
|
Length = 286 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 8e-14
Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 26/205 (12%)
Query: 1283 SCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGII 1342
TF + +VG +GSGKSTL+ I P G ++I+ VD+T + ++
Sbjct: 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVT--AAPPADRPVSML 75
Query: 1343 PQDPTLFDG-TVRGNLD-------PLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAE 1394
Q+ LF TV N+ L + + AL + L L + +L
Sbjct: 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGEL------ 129
Query: 1395 NGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIA 1454
S G+RQ L R L++ +L+LDE A++D A + ++ + T +T+
Sbjct: 130 -----SGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVL-DLHAETKMTVL 183
Query: 1455 HRIHTVIDS----DLVLVLSDGRIA 1475
H D+ V+ L +GRIA
Sbjct: 184 MVTHQPEDAKRLAQRVVFLDNGRIA 208
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 8e-14
Identities = 57/209 (27%), Positives = 96/209 (45%), Gaps = 29/209 (13%)
Query: 655 LKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKA--------YVPQS--- 703
L +G + + G G+GK++LL ILG I GTVK++G YVPQ
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 704 PWILTGNIRENILFGNQ------YDSCKYDRTVEACALVKDFELFASGDLTEIGERGI-N 756
W ++ ++ G C D AL LTE+ +R +
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDAL-------RRVGLTELADRPVGE 113
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD-KSVLYVTHQ 815
+SGGQ+QR+ +ARA+ + LLD+PF+ +D T +L + + + ++L TH
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT-QELLTELFIELAGAGTAILMTTHD 172
Query: 816 -VEFLPAADIILVMENGRIAQAGRFEELL 843
+ + D ++++ NGR+ G ++L
Sbjct: 173 LAQAMATCDRVVLL-NGRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 8e-14
Identities = 67/247 (27%), Positives = 113/247 (45%), Gaps = 37/247 (14%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PT 1316
I NL++ Y + V+K + P ++G +G GKSTL++ R++E
Sbjct: 5 IETVNLRVYYGSN--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARV 62
Query: 1317 MGSIIIDNVDI--TKIGLHDLRSRLGIIPQDP------TLFDGTVRG-NLDPLVQYS--- 1364
G + + +I + ++R +G++ Q P T++D G L+ LV+
Sbjct: 63 EGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKEL 122
Query: 1365 DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDE 1424
D++V AL K L D V+ + S N S GQRQ + R L K IL++DE
Sbjct: 123 DERVEWALKKAALWDEVKDRLNDYPS-------NLSGGQRQRLVIARALAMKPKILLMDE 175
Query: 1425 ATASVDSATDGVIQKIISQEFKDRTVVTIAH------RIHTVIDSDLVLVLSDGRIAEYD 1478
TA++D I++++ + K+ T+V + H R+ SD V L G++ E
Sbjct: 176 PTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARV-----SDYVAFLYLGKLIEVG 230
Query: 1479 SPTKLLE 1485
K+ E
Sbjct: 231 PTRKVFE 237
|
Length = 253 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 8e-14
Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 54/220 (24%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG-TKAYVP------- 701
+ + L + G + + G G GK+++L I G +G + + G +VP
Sbjct: 30 ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89
Query: 702 ---QS----PWILTGNIRENILFGNQYDSCKYD----RTVEACALVKDFELFASGDLTEI 750
QS P + + EN+ FG + R +EA +V+ L E
Sbjct: 90 TVFQSYALFPHM---TVFENVAFGLRMQKTPAAEITPRVMEALRMVQ---------LEEF 137
Query: 751 GERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDA-----------HTGTQLFKD 798
+R +SGGQ+QR+ IARAV + LLD+ SA+D +L
Sbjct: 138 AQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL--- 194
Query: 799 CLMGILKDKSVLYVTH-QVEFLPAADIILVMENGRIAQAG 837
GI + ++VTH Q E L +D I+VM +GRI Q G
Sbjct: 195 ---GI----TFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227
|
Length = 375 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (179), Expect = 9e-14
Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 24/230 (10%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
+EV N F + ES L+G+ + +G V+I G GSGKS+ I G ++ G V
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 692 KISGTK-------------AYVPQSP--WILTGNIRENILFGNQYDSCKYDRTVEACALV 736
KI G V Q+P + + +++ FG + + ++
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRV--- 121
Query: 737 KDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLF 796
D L A L +SGGQKQR+ +A + +I +LD+ S +D ++
Sbjct: 122 -DEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM 180
Query: 797 KDCLMGILKDK---SVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELL 843
+ ++ +K+K +VL +TH ++ ++D ILVM+ G I + EL
Sbjct: 181 R--VIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
|
Length = 277 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 1e-13
Identities = 56/234 (23%), Positives = 107/234 (45%), Gaps = 31/234 (13%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
++V N FS+ S + L + ++ G VAI G GSGKS++ + G ++ +G +
Sbjct: 8 IKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 692 KISGTK-------------AYVPQSP--WILTGNIRENILFG---NQYDSCKYDRTVEAC 733
KI G + Q+P + + ++I FG + K ++
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 734 ALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGT 793
A E + + + N+SGGQKQR+ IA + + +I + D+ S +D
Sbjct: 127 AKKVGMEDY-------LDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKR 179
Query: 794 QLFKDCLMGIL---KDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLK 844
++ K +M L + K+++ +TH ++ AD ++V G++ G+ +E+L
Sbjct: 180 EIKK--IMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231
|
Length = 271 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-13
Identities = 46/201 (22%), Positives = 90/201 (44%), Gaps = 22/201 (10%)
Query: 1266 NLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNV 1325
N+ ++ + +L +++ T K ++G +GSGKSTL+ I + + G + ++
Sbjct: 3 NISKKFGDK--VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQ 60
Query: 1326 DITKIGLHD----LRSRLGIIPQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQLGDL 1380
+ + R +LG + Q+ L + TV NLD ++Y E +K
Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREK-----K 115
Query: 1381 VRAKEE-----KLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG 1435
A E+ KL + E S G++Q L R +LK +++ DE T S+D
Sbjct: 116 KEALEKVGLNLKLKQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRD 171
Query: 1436 VIQKIISQEFKD-RTVVTIAH 1455
+ ++ + + +T++ + H
Sbjct: 172 EVLDLLLELNDEGKTIIIVTH 192
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 1e-13
Identities = 62/240 (25%), Positives = 107/240 (44%), Gaps = 36/240 (15%)
Query: 1266 NLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNV 1325
R + L T PG+ + GR+GSGK+TLI+ I + P G I+++
Sbjct: 4 RFSKRLGDF---SLD-ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGR 59
Query: 1326 DI----TKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLD--------PLVQYSDKQVWEAL 1372
+ I L + R+G + Q+ LF +VRGNL + S ++V E L
Sbjct: 60 TLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELL 119
Query: 1373 DKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD-S 1431
+G L+ +L S G++Q +GR LL +L++DE A++D
Sbjct: 120 G---IGHLLGRLPGRL-----------SGGEKQRVAIGRALLSSPRLLLMDEPLAALDDP 165
Query: 1432 ATDGVIQKI--ISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERED 1488
++ + + EF ++ ++H + V+ +D V+VL DGR+A ++ D
Sbjct: 166 RKYEILPYLERLHAEF-GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 1e-13
Identities = 65/216 (30%), Positives = 99/216 (45%), Gaps = 42/216 (19%)
Query: 653 IQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKA-YVP---------- 701
I L + G V G G GKS+LL I G +G + I + VP
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81
Query: 702 QS----PWILTGNIRENILFGNQYDSCK---YDRTVEACALVKDFELFASGDLTEIGERG 754
QS P + ++ EN+ FG + K ++ V A E+ L + +
Sbjct: 82 QSYALYPHL---SVAENMSFGLKLAGAKKEEINQRVNQVA-----EVLQLAHLLD--RKP 131
Query: 755 INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK------- 807
+SGGQ+QR+ I R + + ++LLD+P S +DA Q M I +
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ------MRIEISRLHKRLGR 185
Query: 808 SVLYVTH-QVEFLPAADIILVMENGRIAQAGRFEEL 842
+++YVTH QVE + AD I+V++ GR+AQ G+ EL
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
Length = 369 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 1e-13
Identities = 61/245 (24%), Positives = 122/245 (49%), Gaps = 28/245 (11%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRI--VEPT--- 1316
+ L + + ++ +K++S FP ++G +G GKST++++I R+ + P+
Sbjct: 5 VKLEQLNVHFGKN--HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARV 62
Query: 1317 MGSIIIDNVDITKIGLH--DLRSRLGIIPQDP------TLFDGTVRG-NLDPLVQYS--D 1365
G I++D+ DI G+ +R R+G++ Q P +++D + G L+ V S D
Sbjct: 63 TGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEAD 122
Query: 1366 KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEA 1425
+ V +L + L D V+ ++L S E S GQ+Q C+ RT+ K ++++DE
Sbjct: 123 EIVESSLKRVALWDEVK---DRLKSNAME----LSGGQQQRLCIARTIAVKPEVILMDEP 175
Query: 1426 TASVDSATDGVIQKIISQEFKDR-TVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKL 1483
+++D + I+++I +E K++ T++ + H + SD G + E K+
Sbjct: 176 ASALDPISTLKIEELI-EELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234
Query: 1484 LERED 1488
+
Sbjct: 235 FTTPE 239
|
Length = 252 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 60/226 (26%), Positives = 105/226 (46%), Gaps = 31/226 (13%)
Query: 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT 690
E+E +S L I +K + G I G G+GKS+L+ I I G+
Sbjct: 3 EIEFKEVSYS---SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59
Query: 691 VKISGT--KAY-----------VPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVK 737
+ I G K V Q P + G +++NI +G K ++ V+
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYG---PMLKGEKNVDV----- 111
Query: 738 DFELFASGDLTEIGERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLF 796
++ L G E R + N+SGG+ QR+ IAR + + ++ LLD+P SA+D T T++
Sbjct: 112 EYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP-TSTEII 170
Query: 797 KDCLMGILKDK---SVLYVTHQVEFLP-AADIILVMENGRIAQAGR 838
++ ++ LK+K +V+++TH +E D + G + + +
Sbjct: 171 EELIVK-LKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAK 215
|
Length = 241 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 56/231 (24%), Positives = 96/231 (41%), Gaps = 35/231 (15%)
Query: 1266 NLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNV 1325
L + + LP I + G+ G +G+GKSTL++ I + +P G+I+++
Sbjct: 1 MLCVDIEKRLPDFTLKIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT 59
Query: 1326 DI----TKIGLHDLRSRLGIIPQDPTLFDG-TVRGN----LDPLVQYSDK-QVWEALDKC 1375
+ KI L + ++G++ Q LF VR N L D+ V E LD
Sbjct: 60 VLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLL 119
Query: 1376 QLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG 1435
L L+ +L S G++Q L R L + +L+LDE +++D A
Sbjct: 120 GLDHLLNRYPAQL-----------SGGEKQRVALARALAAQPELLLLDEPFSALDRALRL 168
Query: 1436 VIQKIISQEFKDRTVVTI--------AHRIHTVIDSDLVLVLSDGRIAEYD 1478
+ + Q K+ + I A + D ++V+ DGR+
Sbjct: 169 QLLPELKQIKKNLNIPVIFVTHDLSEAEYLA-----DRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 44/216 (20%)
Query: 1294 VVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG---LHDLRS-RLGIIPQDPTLF 1349
++G +GSGKSTL++ I R++EPT G ++ID DI + L +LR ++ ++ Q L
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114
Query: 1350 -DGTVRGNLD-PL-VQYSDKQV-----WEALDKCQLGDLVRAKEEKLDSTVAENGENWSV 1401
TV N+ L VQ + EAL+ L ++L S
Sbjct: 115 PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDEL-----------SG 163
Query: 1402 GQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKD------RTVVTIAH 1455
G +Q L R L IL++DEA SA D +I++ + E +T+V I H
Sbjct: 164 GMQQRVGLARALAVDPDILLMDEAF----SALDPLIRREMQDELLRLQAELQKTIVFITH 219
Query: 1456 ------RIHTVIDSDLVLVLSDGRIAEYDSPTKLLE 1485
R+ D + ++ DGR+ + +P ++L
Sbjct: 220 DLDEALRL-----GDRIAIMKDGRLVQVGTPEEILT 250
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 2e-13
Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 33/209 (15%)
Query: 1266 NLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRI------VEPTMGS 1319
NL + Y E+ LK+I+ P R+ ++G +G GKSTL++ + R+ V+ T G
Sbjct: 8 NLDLFYGEN--QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKIT-GK 64
Query: 1320 IIIDNVDI-TKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYS------------DK 1366
+ +D DI I + DLR ++G++ Q P F ++ N V Y D+
Sbjct: 65 LTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYEN----VAYGLRAQGIKDKKVLDE 120
Query: 1367 QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEAT 1426
V +L L D V+ ++L S + S GQ+Q C+ RT+ + ++++DE T
Sbjct: 121 VVERSLRGAALWDEVK---DRLKS----HAFGLSGGQQQRLCIARTIAMEPDVILMDEPT 173
Query: 1427 ASVDSATDGVIQKIISQEFKDRTVVTIAH 1455
+++D I++++ + K+ T+V + H
Sbjct: 174 SALDPIATHKIEELMEELKKNYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 2e-13
Identities = 60/234 (25%), Positives = 104/234 (44%), Gaps = 48/234 (20%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQK-----MAGTV------------- 691
+DG+ ++K+G + I G GSGKS L I+G + K + G +
Sbjct: 21 VDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80
Query: 692 ---KISGTK-AYVPQSPW-----ILT-GN-IRENILFGNQYDSCKYDRTVEACALVKDFE 740
KI G + A + Q P ++T G+ I E + + S K + A L++
Sbjct: 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKE-RAIELLELVG 139
Query: 741 LFASGDLTEIGERGINM-----SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQL 795
+ ER + SGG +QR+ IA A+ + + + D+P +A+D Q+
Sbjct: 140 I-------PDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQI 192
Query: 796 FKDCLMGILKDK---SVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELLKQ 845
L+ L+ + +++ +TH + + AD + VM GRI + G EE+ K
Sbjct: 193 LD--LLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 2e-13
Identities = 63/220 (28%), Positives = 113/220 (51%), Gaps = 19/220 (8%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
V++++S T + VG++G G+GK+T + IV G+IIID+ DI+ + LH R+
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA-RA 76
Query: 1338 RLGI--IPQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKE--EKLDSTV 1392
R GI +PQ+ ++F +V NL ++ Q+ + L Q D RA E E+
Sbjct: 77 RRGIGYLPQEASIFRRLSVYDNLMAVL-----QIRDDLSAEQRED--RANELMEEFHIEH 129
Query: 1393 AEN--GENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDR-- 1448
+ G++ S G+R+ + R L ++LDE A VD + I++II + +D
Sbjct: 130 LRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII-EHLRDSGL 188
Query: 1449 TVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE 1487
V+ H + + + ++S G + + +PT++L+ E
Sbjct: 189 GVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDE 228
|
Length = 241 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 2e-13
Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 22/223 (9%)
Query: 638 KFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK 697
S++ +P L+ I L +K+G + I G GSGKS+L + G ++ G V +SG
Sbjct: 6 NVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGID 65
Query: 698 AYVPQSPWILTGNIRE--NILFGNQYDSCKYDRTVEA---------CALVKDFELFASGD 746
L G IR+ I+F N ++ RTVE C +
Sbjct: 66 TGDFSK---LQG-IRKLVGIVFQNP-ETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRA 120
Query: 747 LTEIG------ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCL 800
L EIG +SGGQ Q + +A + + + + D+ S +D +G + +
Sbjct: 121 LAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIK 180
Query: 801 MGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELL 843
K K+++Y+TH +E L AD I+VM+ G+I G E +L
Sbjct: 181 KLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVL 223
|
Length = 274 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 31/226 (13%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
L +S V V+G G+GKSTL+ AI ++PT G I+ID VD+TK + +
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80
Query: 1338 RLGIIPQDP--------TLFD--------GTVRGNLDPLVQYSDKQVWEALDKCQLGDLV 1381
L + QDP T+ + G RG L + + + +L L
Sbjct: 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRG-LSSALNER----RRSSFRERLARLG 135
Query: 1382 RAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT-DGVIQKI 1440
E +L + S GQRQ L L IL+LDE TA++D T + V++
Sbjct: 136 LGLENRLSDRI----GLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELT 191
Query: 1441 --ISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIA-EYDSPTK 1482
I +E K T + + H + +D + +++L G+I + K
Sbjct: 192 AKIVEEHK-LTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEEK 236
|
Length = 263 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 72/225 (32%), Positives = 107/225 (47%), Gaps = 42/225 (18%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVK-----ISGTKAYVPQSP 704
L GI L+VK G VAI G GSGK++LL CI Q AGT++ I ++ Q
Sbjct: 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKG 78
Query: 705 WILTGNIRENILFGNQYDSCKYDRTV-----------------EACALVKDFELFA---- 743
L +R+++ F Q + RTV EA A + EL A
Sbjct: 79 --LIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARAR--ELLAKVGL 134
Query: 744 SGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI 803
+G T R +SGGQ+QR+ IARA+ ++ L D+P SA+D +L + L I
Sbjct: 135 AGKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALDP----ELVGEVLNTI 187
Query: 804 L----KDKSVLYVTHQVEFL-PAADIILVMENGRIAQAGRFEELL 843
+ ++++ VTH++ F AD + M+ GRI + G + L
Sbjct: 188 RQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232
|
Length = 250 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 66/233 (28%), Positives = 103/233 (44%), Gaps = 46/233 (19%)
Query: 643 PESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQ 702
P++++ L + V G VAI G GSGKS+L + G + AGT+ + G +
Sbjct: 16 PDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMV-LSEE 74
Query: 703 SPWILTGNIRENI--LF---GNQYDSCKYDRTVEACALVKD---FELFASG-DLTEIGER 753
+ W ++R + +F NQ+ A V+D F L G E+ ER
Sbjct: 75 TVW----DVRRQVGMVFQNPDNQF----------VGATVQDDVAFGLENIGVPREEMVER 120
Query: 754 ------GINM-----------SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLF 796
+ M SGGQKQR+ IA + DI +LD+ S +D G +
Sbjct: 121 VDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP-RGRREV 179
Query: 797 KDCLMGILKDKS---VLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846
+ + LK++ VL +TH ++ AD ++VM G I + G EE+ K
Sbjct: 180 LETVR-QLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG 231
|
Length = 279 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 59/242 (24%), Positives = 119/242 (49%), Gaps = 34/242 (14%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I ++ RY + LK++S + + V +VG GSGKSTL + + ++ P G+I
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDP-TLFDG-TVRGNL-----------DPLVQYSDKQV 1368
+ + +++ + D+R ++G++ Q+P F G TV+ ++ + +V ++V
Sbjct: 66 VGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMV----ERV 121
Query: 1369 WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATAS 1428
+AL + + D + + +L S GQ+Q + L + I++LDEAT+
Sbjct: 122 DQALRQVGMEDFLNREPHRL-----------SGGQKQRVAIAGVLALQPDIIILDEATSM 170
Query: 1429 VDSATD----GVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLL 1484
+D ++++ Q K TV++I H + +D V+V++ G I E +P ++
Sbjct: 171 LDPRGRREVLETVRQLKEQ--KGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIF 228
Query: 1485 ER 1486
+
Sbjct: 229 KS 230
|
Length = 279 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 2e-13
Identities = 60/235 (25%), Positives = 112/235 (47%), Gaps = 21/235 (8%)
Query: 1263 SFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PTM 1317
NL + Y E LKNI+ + ++G +G GKST I+ + R+VE T
Sbjct: 26 DTQNLNLWYGED--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTT 83
Query: 1318 GSIIIDNVDI--TKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKC 1375
G I+ + +I + +LR+ +G++ Q P F ++ N V Y K + DK
Sbjct: 84 GKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDN----VTYGPK-IHGIKDKK 138
Query: 1376 QLGDLVR------AKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASV 1429
L ++V A ++L + +N S GQ+Q C+ R L + ++++DE T+++
Sbjct: 139 TLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSAL 198
Query: 1430 DSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKL 1483
D + +++++ + KD +++ + H + SD +G + EYD K+
Sbjct: 199 DPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253
|
Length = 271 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 3e-13
Identities = 56/235 (23%), Positives = 106/235 (45%), Gaps = 18/235 (7%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ F NL + VLKNI+ + + + G TGSGK++L+ I +EP+ G I
Sbjct: 40 LFFSNLCL----VGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI- 94
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLV 1381
H R+ Q + GT++ N+ V Y + + + CQL + +
Sbjct: 95 ----------KHS--GRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDI 142
Query: 1382 RAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG-VIQKI 1440
EK ++ + E G S GQR L R + K + + +LD +D T+ + +
Sbjct: 143 TKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESC 202
Query: 1441 ISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
+ + ++T + + ++ + +D +L+L +G Y + ++L F S+L+
Sbjct: 203 VCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKLM 257
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 3e-13
Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 38/207 (18%)
Query: 663 VAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-----------------AYVPQSPW 705
AI G GSGK++L+ I G + G + ++G YV Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85
Query: 706 ILTG-NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGIN-MSGGQKQ 763
+ ++R N+ +G + R + EL G L R +SGG+KQ
Sbjct: 86 LFPHLSVRGNLRYGMKRARPSERRISFERVI----ELLGIGHLLG---RLPGRLSGGEKQ 138
Query: 764 RIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK------DKSVLYVTHQV- 816
R+ I RA+ + L+D+P +A+D K ++ L+ +LYV+H +
Sbjct: 139 RVAIGRALLSSPRLLLMDEPLAALDDPR-----KYEILPYLERLHAEFGIPILYVSHSLQ 193
Query: 817 EFLPAADIILVMENGRIAQAGRFEELL 843
E L AD ++V+E+GR+A AG E+
Sbjct: 194 EVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (175), Expect = 3e-13
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 25/235 (10%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I N+ Y + P+ L+NI+ + +G++G+ GSGKSTL + ++ P G ++
Sbjct: 2 IRLENVSYSYPDGTPA-LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 1322 IDNVDITKIG-LHDLRSRLGIIPQDP-TLFDG-TVRGNLD--------PLVQYSDKQVWE 1370
+ +D L +R +GI+ Q+P T F G TV +L P ++ K+V
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIR-KRVDR 119
Query: 1371 ALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD 1430
AL E L+ + + S GQ Q L L + L+ DE T+ +D
Sbjct: 120 AL-----------AEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLD 168
Query: 1431 -SATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLL 1484
+ V+++I K +T+V I H + + D+D ++V+ G+I P +L
Sbjct: 169 PDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVL 223
|
Length = 274 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 3e-13
Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 33/191 (17%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
L G+ +RG +A+ G G+GKS+LL + G ++ +G V I G
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 698 ---AYVPQSP--WILTGNIRENILFGNQYDSCKYD----RTVEACALVKDFELFASGDLT 748
V Q P + ++ +++ FG R EA V +
Sbjct: 68 QRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAV---------GAS 118
Query: 749 EIGERGINM-SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD- 806
+ ER + SGG+K+R+ IA AV D+ LLD+P + +D Q+ L + +
Sbjct: 119 GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQML-AILRRLRAEG 177
Query: 807 KSVLYVTHQVE 817
+V+ TH V+
Sbjct: 178 MTVVISTHDVD 188
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 3e-13
Identities = 57/228 (25%), Positives = 104/228 (45%), Gaps = 33/228 (14%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
L NI+ P ++ V+G G+GKSTL + I++PT GS++I ITK + ++R
Sbjct: 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRK 78
Query: 1338 RLGIIPQDP--TLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAEN 1395
+G++ Q+P +F TV ++ A LG ++ S +
Sbjct: 79 FVGLVFQNPDDQIFSPTVEQDI-------------AFGPINLGLDEETVAHRVSSALHML 125
Query: 1396 G---------ENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKI-----I 1441
G + S G+++ + + + +LVLDE TA +D GV + I +
Sbjct: 126 GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP--QGVKELIDFLNDL 183
Query: 1442 SQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERED 1488
+ + TV+ H++ V + +D + V+ GRI Y + ++ + D
Sbjct: 184 PETY-GMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230
|
Length = 277 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 3e-13
Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 38/218 (17%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+S N+ + + + VL ++S K + ++G G+GKSTL++ + +V P G I
Sbjct: 5 VSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK 62
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQ----DPTLFDGTVRG--NLDPLVQYSDKQVWEALDKC 1375
+ + R+G +PQ D TL TV L P + D + AL +
Sbjct: 63 -----------RNGKLRIGYVPQKLYLDTTL-PLTVNRFLRLRPGTKKED--ILPALKRV 108
Query: 1376 QLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG 1435
Q G L+ A +KL S G+ Q L R LL + +LVLDE T VD
Sbjct: 109 QAGHLIDAPMQKL-----------SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQV 157
Query: 1436 VIQKIISQ---EFKDRTVVTIAHRIHTVI-DSDLVLVL 1469
+ +I Q E D V+ ++H +H V+ +D VL L
Sbjct: 158 ALYDLIDQLRREL-DCAVLMVSHDLHLVMAKTDEVLCL 194
|
Length = 251 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 4e-13
Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 15/207 (7%)
Query: 1271 YAEHLPSVL-KNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITK 1329
+ E P VL +++S + P K V+G TGSGKSTL+Q++ E + G + +
Sbjct: 667 FFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------ 720
Query: 1330 IGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLD 1389
RS + +PQ + + TVRGN+ + ++ +A+ QL + L+
Sbjct: 721 ------RS-IAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLE 773
Query: 1390 STVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT-DGVIQKIISQEFKDR 1448
+ + E G N S GQ+ L R + + +LD+ +++D+ + V+++ +
Sbjct: 774 TEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGK 833
Query: 1449 TVVTIAHRIHTVIDSDLVLVLSDGRIA 1475
T V H++H V +D V+ L DGR+
Sbjct: 834 TRVLATHQVHVVPRADYVVALGDGRVE 860
|
Length = 1560 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 4e-13
Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 46/213 (21%)
Query: 1279 LKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSR 1338
+ +S + + +G+VG +G GKSTL + I + EPT G I+ + DITK+ + R
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERR-- 86
Query: 1339 LGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGEN 1398
++V E L+K L + + +
Sbjct: 87 ---------------------------ERVLELLEKVGLPEEFL---YRYPHEL------ 110
Query: 1399 WSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDR---TVVTIAH 1455
S GQRQ + R L ++V DE +++D + I ++ ++ ++ T + I+H
Sbjct: 111 -SGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLL-KDLQEELGLTYLFISH 168
Query: 1456 RIHTV--IDSDLVLVLSDGRIAEYDSPTKLLER 1486
+ V I SD + V+ G+I E ++
Sbjct: 169 DLSVVRYI-SDRIAVMYLGKIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 4e-13
Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 40/197 (20%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCI-----LGEIQKMAGTVKISGTKAY----- 699
LD + + + A+ G G GKS+ L CI L + ++ G + G Y
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 700 ----------VPQSPWILTGNIRENILFG--NQYDSCKYDRTVEA----CAL---VKDFE 740
V Q P +I +N+ +G Q D VE AL VKD
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-- 172
Query: 741 LFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCL 800
++ G+++SGGQ+QR+ IARA+ D ++ L+D+P SA+D +++ +D +
Sbjct: 173 --------QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKI-EDLI 223
Query: 801 MGILKDKSVLYVTHQVE 817
+ ++ +V+ VTH ++
Sbjct: 224 EELAEEYTVVIVTHNMQ 240
|
Length = 285 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 4e-13
Identities = 66/233 (28%), Positives = 104/233 (44%), Gaps = 48/233 (20%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAY---------V 700
LDG+ V G KVA+ G GSGKS++L ++ G +++ G + Y V
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLV 75
Query: 701 PQSPWILTGNIRENI--------LFGNQYDSCKYDRTVEACALVKDF----------ELF 742
P L +R I LF ++ D EA LV EL
Sbjct: 76 PADEKHLR-QMRNKIGMVFQSFNLFPHK---TVLDNVTEAPVLVLGMARAEAEKRAMELL 131
Query: 743 ASGDLTEIGERGINM----SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKD 798
D+ + ++ +M SGGQ+QR+ IARA+ + L D+ SA+D +L +
Sbjct: 132 ---DMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDP----ELVGE 184
Query: 799 CLMGILK-----DKSVLYVTHQVEFL-PAADIILVMENGRIAQAGRFEELLKQ 845
L I + D ++L VTH++ F AD + + GRI + G+ +E+ +Q
Sbjct: 185 VLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ 237
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 5e-13
Identities = 60/225 (26%), Positives = 96/225 (42%), Gaps = 43/225 (19%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCI-----LGEIQKMAGTVKISGTKAY----- 699
L I L + + A+ G G GKS+LL + L ++ G V G Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 700 ----------VPQSPWILTGNIRENILFGNQYDSCKY----DRTVEA----CAL---VKD 738
V Q P +I +NI +G + K D VE AL VKD
Sbjct: 77 VVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD 136
Query: 739 FELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKD 798
L S + +SGGQ+QR+ IARA+ + ++ LLD+P SA+D T ++
Sbjct: 137 -RLHDSA---------LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDP-IATGKIEE 185
Query: 799 CLMGILKDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEEL 842
+ + K +++ VTH ++ +D +G + + G E++
Sbjct: 186 LIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 5e-13
Identities = 59/251 (23%), Positives = 101/251 (40%), Gaps = 44/251 (17%)
Query: 1266 NLQIRYAEHLPSV--LKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP-----TMG 1318
NL + + V + +S + +G+VG +GSGKS L +AI ++ G
Sbjct: 6 NLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGG 65
Query: 1319 SIIIDNVDITKIG---LHDLR-SRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDK 1374
I+ D D+ + L +R + +I QDP +L+P++ D Q+ E L
Sbjct: 66 EILFDGKDLLSLSEKELRKIRGKEIAMIFQDP-------MTSLNPVMTIGD-QIAEVLRL 117
Query: 1375 CQLGDLVRAKEEK----LDSTVAENGENW--------SVGQRQLFCLGRTLLKKSSILVL 1422
G + +E+ L+ + E S G RQ + L +L+
Sbjct: 118 HGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIA 177
Query: 1423 DEATASVDSATDGVIQKIISQEFKD------RTVVTIAHRIHTV--IDSDLVLVLSDGRI 1474
DE T ++D +Q I K+ ++ I H + V I +D V V+ GRI
Sbjct: 178 DEPTTALDV----TVQAQILDLLKELQREKGTALILITHDLGVVAEI-ADRVAVMYAGRI 232
Query: 1475 AEYDSPTKLLE 1485
E ++ +
Sbjct: 233 VEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 5e-13
Identities = 55/207 (26%), Positives = 101/207 (48%), Gaps = 19/207 (9%)
Query: 1279 LKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN--VDITKIGLHDLR 1336
LK I+ + ++G G+GKSTL Q + I++P+ G I+ D +D ++ GL LR
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 1337 SRLGIIPQDP--TLFDGTVRGNLD--PL-VQYSDKQVWEALDKCQLGDLVRAKEEKLDST 1391
+G++ QDP LF +V ++ + ++ + +V + +D A +
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD--------NALKRTGIEH 133
Query: 1392 VAENGENW-SVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DR 1448
+ + + S GQ++ + L+ + +LVLDE TA +D I K++ + K
Sbjct: 134 LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGL 193
Query: 1449 TVVTIAHRIHTV-IDSDLVLVLSDGRI 1474
T++ H I V + D V V+ +GR+
Sbjct: 194 TIIIATHDIDIVPLYCDNVFVMKEGRV 220
|
Length = 283 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (173), Expect = 5e-13
Identities = 64/232 (27%), Positives = 114/232 (49%), Gaps = 21/232 (9%)
Query: 1266 NLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMG-----SI 1320
NL + +A +VL +S FP R ++G TGSGK+T ++ + R+ + G +
Sbjct: 26 NLTLGFAGK--TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDV 83
Query: 1321 IIDNVDITKI-GLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSD---KQVWEALDKCQ 1376
++ I + + R R+G++ Q P F ++ N+ V+ ++ + + + +
Sbjct: 84 LLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQAR 143
Query: 1377 LGD--LVRAKEEKL-DSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT 1433
L + L A +++L DS +G GQ+QL CL RTL +L+LDE T+++D T
Sbjct: 144 LTEVGLWDAVKDRLSDSPFRLSG-----GQQQLLCLARTLAVNPEVLLLDEPTSALDPTT 198
Query: 1434 DGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484
I++ I TV+ + H + SD + DGR+ E + PT+ L
Sbjct: 199 TEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE-EGPTEQL 249
|
Length = 276 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 5e-13
Identities = 55/231 (23%), Positives = 104/231 (45%), Gaps = 37/231 (16%)
Query: 1279 LKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFR----IVEPTM-GSIIIDNVDITK--IG 1331
+K I F K ++G +GSGKST ++++ R I + G I+ +DI + I
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 1332 LHDLRSRLGIIPQDPTLFDGTVRGNL----------DPLVQYSDKQVWEALDKCQLGDLV 1381
++++R +G++ Q P F ++ N+ D + D+ V +L + L D V
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDK--KVLDEIVETSLKQAALWDQV 153
Query: 1382 RAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKII 1441
+ K S + +G GQ+Q C+ R + K IL++DE +++D + +++ +
Sbjct: 154 KDDLHK--SALTLSG-----GQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETM 206
Query: 1442 SQEFKDRTVVTIAH------RIHTVIDSDLVLVLSDGRIAEYDSPTKLLER 1486
+ K+ T++ + H R SD G + EYD +
Sbjct: 207 FELKKNYTIIIVTHNMQQAARA-----SDYTAFFYLGDLIEYDKTRNIFTN 252
|
Length = 267 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 5e-13
Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 40/226 (17%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
+ ++S + VG++G G+GK+TL I +P+ G++I DIT + H +
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIA 77
Query: 1338 RLGIIP--QDPTLFDG-TVRGNL---------------DPLVQYSDKQV----WEALDKC 1375
RLGI Q LF G TV N+ P + +++ E L+
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 1376 QLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASV-DSATD 1434
LG+L L S GQ++ + R L + +L+LDE A + T+
Sbjct: 138 GLGELADRPAGNL-----------SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETE 186
Query: 1435 GVIQKI--ISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGR-IAE 1476
+ + I + T++ I H + V+ +D ++VL+ G IAE
Sbjct: 187 ELAELIRELRDRG-GVTILLIEHDMKLVMGLADRIVVLNYGEVIAE 231
|
Length = 250 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 6e-13
Identities = 54/217 (24%), Positives = 102/217 (47%), Gaps = 28/217 (12%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK---------- 697
++ + L+V G V + G G+GK++ I+G ++ +G + +
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77
Query: 698 ----AYVPQSPWILTG-NIRENILFGNQY---DSCKYDRTVEACALVKDFELFASGDLTE 749
Y+PQ I + +NI+ + D K +R E AL+++F + D
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDS-- 135
Query: 750 IGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKS- 808
+ ++SGG+++R++IARA+ + LLD+PF+ VD + + ++ LKD+
Sbjct: 136 ---KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQR--IIKHLKDRGI 190
Query: 809 -VLYVTHQV-EFLPAADIILVMENGRIAQAGRFEELL 843
VL H V E L D ++ +G++ G EE++
Sbjct: 191 GVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227
|
Length = 243 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 6e-13
Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 40/205 (19%)
Query: 664 AICGTVGSGKSSLLSCILGEIQKMAGTVKISG------TK-----------AYVPQSPWI 706
A+ G GSGK+SL++ I G + G ++++G K YV Q +
Sbjct: 28 ALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87
Query: 707 LTG-NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRI 765
+R N+ +G + LV L L + +SGG+KQR+
Sbjct: 88 FPHYTVRGNLRYGM-----WKSMRAQFDQLV---ALLGIEHL--LDRYPGTLSGGEKQRV 137
Query: 766 QIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK------DKSVLYVTHQV-EF 818
I RA+ ++ L+D+P +++D K ++ L+ + +LYV+H + E
Sbjct: 138 AIGRALLTAPELLLMDEPLASLDLPR-----KREILPYLERLRDEINIPILYVSHSLDEV 192
Query: 819 LPAADIILVMENGRIAQAGRFEELL 843
L AD ++V+ENG++ +G EE+
Sbjct: 193 LRLADRVVVLENGKVKASGPLEEVW 217
|
Length = 352 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 7e-13
Identities = 55/217 (25%), Positives = 100/217 (46%), Gaps = 53/217 (24%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPW---- 705
D + L VK+G A+ G G+GKS+L+ + G Q +G +++ G + +SP
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVR-IKSPRDAIR 78
Query: 706 --------------ILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIG 751
LT + ENI+ G + +A A +K E+
Sbjct: 79 LGIGMVHQHFMLVPTLT--VAENIILGLEPSKGGLIDRRQARARIK-----------ELS 125
Query: 752 ER-GIN---------MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLM 801
ER G+ +S G++QR++I +A+Y+ A + +LD+P + + T D L
Sbjct: 126 ERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVL-----TPQEADELF 180
Query: 802 GILKD-----KSVLYVTHQV-EFLPAADIILVMENGR 832
IL+ K+++++TH++ E + AD + V+ G+
Sbjct: 181 EILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGK 217
|
Length = 501 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 7e-13
Identities = 67/246 (27%), Positives = 107/246 (43%), Gaps = 55/246 (22%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG-------------T 696
LD + L ++ G VAI G G+GKS+LL + GE+ +G V+++G
Sbjct: 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARR 77
Query: 697 KAYVPQS-----PWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIG 751
+A +PQ P+ + E + G A A DL +
Sbjct: 78 RAVLPQHSSLSFPF----TVEEVVAMGRAPHGLSRAEDDALVA-----AALAQVDLAHLA 128
Query: 752 ERGI-NMSGGQKQRIQIARAVYQDAD------IYLLDDPFSAVD-AHTGTQLFKDCLMGI 803
R +SGG++QR+Q+AR + Q + LLD+P SA+D AH Q ++ +
Sbjct: 129 GRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH---QHH---VLRL 182
Query: 804 LKDK------SVLYVTHQVEFLPA--ADIILVMENGRIAQAGRFEE-----LLKQNIGFE 850
+ +V+ V H + L A AD I+++ GR+ G E L++ G +
Sbjct: 183 ARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVADGTPAEVLTPETLRRVYGAD 241
Query: 851 VLVGAH 856
VLV H
Sbjct: 242 VLVQPH 247
|
Length = 258 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 9e-13
Identities = 64/225 (28%), Positives = 102/225 (45%), Gaps = 35/225 (15%)
Query: 645 SSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSP 704
S L+ I R ++A+ G G+GKS+L G ++ +G+V I G
Sbjct: 15 GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEP------- 67
Query: 705 WILTGNIRE-----NILFGNQYDSCKYDRTVEA------CALVKDFELFASG-------- 745
I NIRE ++F N D + TVE L D E A
Sbjct: 68 -ITKENIREVRKFVGLVFQNPDDQI-FSPTVEQDIAFGPINLGLDEETVAHRVSSALHML 125
Query: 746 DLTEIGERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL 804
L E+ +R ++SGG+K+R+ IA + + + +LD+P + +D +L + L
Sbjct: 126 GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELID--FLNDL 183
Query: 805 KDK---SVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845
+ +V++ THQ++ +P AD I VM+ GRI G EE+ Q
Sbjct: 184 PETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228
|
Length = 277 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 9e-13
Identities = 58/226 (25%), Positives = 109/226 (48%), Gaps = 32/226 (14%)
Query: 645 SSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG------TKA 698
+ LD + L + +G +I G G+GKS+LLS + ++K +G + I G
Sbjct: 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSK 71
Query: 699 YVPQSPWILTG--------NIRENILFGNQYDSCKYDRTVEACALVKD-FELFASGDLTE 749
+ + IL +R+ + FG ++ + T E ++ + E L +
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGFG-RFPYSQGRLTKEDRRIINEAIEYL---HLED 127
Query: 750 IGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--- 805
+ +R ++ +SGGQ+QR IA + QD D LLD+P + +D Q +M IL+
Sbjct: 128 LSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQ-----IMKILRRLA 182
Query: 806 ---DKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQNI 847
K+++ V H + F +D I+ ++NG++ + G +E+++ I
Sbjct: 183 DELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEI 228
|
Length = 252 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-12
Identities = 49/192 (25%), Positives = 80/192 (41%), Gaps = 39/192 (20%)
Query: 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSI 1320
I+ NL + Y + +L+N+S T +++G+VGR G+GKSTL++ + +EP G +
Sbjct: 3 MITLENLSLAYGDRP--LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 1321 IIDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNL--------DPLVQYSDKQVWEA 1371
R+G + Q+P L TV + + L + + A
Sbjct: 61 TRPKG-----------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 1372 LDKCQLGDLVRAKEEKLDSTVAEN---------GENW--------SVGQRQLFCLGRTLL 1414
+L + A E+LD E G S G R+ L R LL
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 1415 KKSSILVLDEAT 1426
++ +L+LDE T
Sbjct: 170 EEPDLLLLDEPT 181
|
Length = 530 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 1e-12
Identities = 60/232 (25%), Positives = 106/232 (45%), Gaps = 22/232 (9%)
Query: 1267 LQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN-- 1324
L++ + + L + + + T P R + G +GSGK++LI I + P G I ++
Sbjct: 2 LELNFRQRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRV 61
Query: 1325 -VDITK-IGLHDLRSRLGIIPQDPTLFDG-TVRGNLDPLVQYSDKQVWEAL-DKCQLGDL 1380
VD K I L + R+G + QD LF TVRGNL + S + ++ L + L
Sbjct: 62 LVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHL 121
Query: 1381 VRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQ-- 1438
+ L S G++Q +GR LL +L++DE AS+D I
Sbjct: 122 LDRYPGTL-----------SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPY 170
Query: 1439 -KIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERED 1488
+ + E + ++ ++H + V+ +D V+VL +G++ ++ D
Sbjct: 171 LERLRDEI-NIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPD 221
|
Length = 352 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 1e-12
Identities = 62/257 (24%), Positives = 120/257 (46%), Gaps = 39/257 (15%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPT----- 1316
+S ++ I Y + +KN++ ++G +G GK+T ++AI R+ + T
Sbjct: 5 LSAQDVNIYYGDK--QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARV 62
Query: 1317 MGSIIIDNVDITKIGLHD--LRSRLGIIPQDP------TLFDGTVRG-------NLDPLV 1361
G I++D DI + +R R+G++ Q P ++FD V G + D L+
Sbjct: 63 TGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLM 122
Query: 1362 QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILV 1421
+ +++ +L L D V+ ++L + S GQ+Q C+ R L + IL+
Sbjct: 123 EVAER----SLRGAALWDEVK---DRLKTPAT----GLSGGQQQRLCIARALAVEPEILL 171
Query: 1422 LDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSP 1480
+DE T+++D A+ I+ +++ K T++ + H +H SD G + E+
Sbjct: 172 MDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPT 231
Query: 1481 TKLL-----EREDSFFS 1492
+L ER +++ S
Sbjct: 232 DQLFTNPRDERTEAYVS 248
|
Length = 252 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 1e-12
Identities = 51/209 (24%), Positives = 94/209 (44%), Gaps = 32/209 (15%)
Query: 1266 NLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRI-----VEPTMGSI 1320
L Y + L +IS F + ++G +G GKST ++ + R+ G I
Sbjct: 11 GLSFFYGDFQ--ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI 68
Query: 1321 IIDNVDI--TKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYS-------DK----- 1366
++D +I + + +LR R+G++ Q P F ++ N V Y DK
Sbjct: 69 LLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFEN----VAYGLRVNGVKDKAYLAE 124
Query: 1367 QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEAT 1426
+V +L L D V+ ++L E+ S GQ+Q C+ R L + +L++DE
Sbjct: 125 RVERSLRHAALWDEVK---DRLH----ESALGLSGGQQQRLCIARALAVEPEVLLMDEPA 177
Query: 1427 ASVDSATDGVIQKIISQEFKDRTVVTIAH 1455
+++D I+++I + T++ + H
Sbjct: 178 SALDPIATQKIEELIHELKARYTIIIVTH 206
|
Length = 253 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 2e-12
Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 14/226 (6%)
Query: 1271 YAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKI 1330
++ ++ VLKNIS + + V G TGSGKS+L+ I +EP+ G I
Sbjct: 434 FSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI---------- 483
Query: 1331 GLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDS 1390
H R+ PQ + GT++ N+ + Y + + + CQL + + EK +
Sbjct: 484 -KHS--GRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKT 540
Query: 1391 TVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVI-QKIISQEFKDRT 1449
+ E G S GQR L R + K + + +LD +D T+ I + + + ++T
Sbjct: 541 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKT 600
Query: 1450 VVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
+ + ++ + +D +L+L +G Y + ++L + F S L+
Sbjct: 601 RILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLL 646
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 2e-12
Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 15/246 (6%)
Query: 644 ESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------- 696
E+ L + V+ G +V + G GSGKS+LLS +L + G ++I G
Sbjct: 1229 EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL-RLLSTEGEIQIDGVSWNSVTL 1287
Query: 697 ----KAY--VPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEI 750
KA+ +PQ +I +G R+N+ Q+ + + E L E F +
Sbjct: 1288 QTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVL 1347
Query: 751 GERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVL 810
+ G +S G KQ + +AR++ A I LLD+P + +D T Q+ + L + +V+
Sbjct: 1348 VDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT-LQIIRKTLKQSFSNCTVI 1406
Query: 811 YVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGAHSQALESVLTVETSS 870
H+VE L LV+E + Q ++LL + F+ + A + L SS
Sbjct: 1407 LSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADRLKLFPLHRRNSS 1466
Query: 871 RTSQDP 876
+ P
Sbjct: 1467 KRKPQP 1472
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 26/226 (11%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
L +++ P V ++G +GSGKSTL++ I + +P G I ++ D T++ D
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARD--R 72
Query: 1338 RLGIIPQDPTLFDG-TVRGN-------LDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLD 1389
++G + Q LF TVR N +V E L+ QL L +L
Sbjct: 73 KIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQL- 131
Query: 1390 STVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDR- 1448
S GQRQ L R L + +L+LDE ++D+ ++ + ++ D
Sbjct: 132 ----------SGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWL-RKLHDEV 180
Query: 1449 --TVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDSFF 1491
T V + H ++ +D ++V+S+G+I + SP ++ + + F
Sbjct: 181 HVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 2e-12
Identities = 56/225 (24%), Positives = 106/225 (47%), Gaps = 38/225 (16%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVK-----ISGTKAY----- 699
LD + V+ G + G G+GK++L + I G ++ +G+V I+G +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 700 -------VPQSPWILTGNIRENILFGNQYDS-----CKYDRTVEACALVKDFELFASGDL 747
+P+ LT + EN++ Q + R E A + EL L
Sbjct: 76 GIGRTFQIPRLFPELT--VLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL 133
Query: 748 TEIGER-GINMSGGQKQRIQIARAVYQDADIYLLDDPF---SAVDAHTGTQLFKDCLMGI 803
++ +R +S GQ++R++IARA+ D + LLD+P + + +L ++
Sbjct: 134 ADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRE----- 188
Query: 804 LKDK--SVLYVTHQVEFLPA-ADIILVMENGR-IAQAGRFEELLK 844
L+++ +VL V H ++ + + AD + V++ GR IA+ G +E+
Sbjct: 189 LRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAE-GTPDEVRN 232
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-12
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 28/285 (9%)
Query: 542 AFIFWGSPTFISVVTFGACMLLGIQLTA---GRVLSALATFRMLQDPIFNLPDLLSNIAQ 598
I +P + S G G+ G+V S+L+ F D IA
Sbjct: 306 LPILIAAPRYFS----GQITFGGLMQAVGAFGQVHSSLSWFI----------DNYDAIAD 351
Query: 599 GKVSADRIAAYLQE-DEIQRDAVEYVPKGRSEFEVEVVNG-----KFSWNPESSSPTLDG 652
+ + R+A + Q + Q D + GR + + S L
Sbjct: 352 WRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSE 411
Query: 653 IQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKA--YVPQSPWILTGN 710
+ +V+ G ++ I G G+GK+SLL + G +G + + A ++PQ P++ G
Sbjct: 412 LNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGT 471
Query: 711 IRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARA 770
+RE + + N V V +L + L E +SGG++QR+ AR
Sbjct: 472 LREALCYPNAAPDFSDAELVAVLHKVGLGDL--AERLDEEDRWDRVLSGGEQQRLAFARL 529
Query: 771 VYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQ 815
+ LD+ SA+D T +L+ L L D +V+ V H+
Sbjct: 530 LLHKPKWVFLDEATSALDEETEDRLY-QLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (168), Expect = 2e-12
Identities = 67/267 (25%), Positives = 122/267 (45%), Gaps = 36/267 (13%)
Query: 1262 ISFHNLQIRY-AEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSI 1320
+ NL +Y E + L +S + + V ++G+ GSGKST + I + E G +
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 1321 IIDNVDITKIGLHDLRSRLGIIPQDP-------TLFDGTVRGNLDPLVQYSD--KQVWEA 1371
ID +T + +LR ++G++ Q+P T+ D G + + + K+V EA
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 1372 LDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDS 1431
L + D + +L S GQ+Q + + + I++LDE+T+ +D
Sbjct: 125 LLAVNMLDFKTREPARL-----------SGGQKQRVAVAGIIALRPEIIILDESTSMLDP 173
Query: 1432 ATDGVIQKIISQEFKDR---TVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLERED 1488
I ++I E K++ TV++I H + SD +LV+ G I + +P++L +
Sbjct: 174 TGRQEIMRVI-HEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232
Query: 1489 S---------FFSQLIKEYSMRSQNFN 1506
F S L+K+ +R F+
Sbjct: 233 DMVEIGLDVPFSSNLMKD--LRKNGFD 257
|
Length = 277 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 54/213 (25%), Positives = 90/213 (42%), Gaps = 34/213 (15%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMA---GTVKISGTK--------- 697
L+ + L V+ G +AI G+ GSGK++LL I G ++ G + +G
Sbjct: 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82
Query: 698 -AYVPQSPWILTG-NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGI 755
AYV Q +L G +RE + + + V+D L G
Sbjct: 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVK 142
Query: 756 NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD-----KSVL 810
+SGG+++R+ IA + D + +LD+P S +D+ T L L + V+
Sbjct: 143 GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVS-----TLSQLARRNRIVI 197
Query: 811 YVTHQVEFLPAADI------ILVMENGRIAQAG 837
HQ P +D+ IL++ +G I +G
Sbjct: 198 LTIHQ----PRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 2e-12
Identities = 64/240 (26%), Positives = 110/240 (45%), Gaps = 40/240 (16%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
+E + K+S+ + + L GI K ++G VA+ G G+GKS+L G ++ +G V
Sbjct: 2 LETRDLKYSYPDGTEA--LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 692 KISG---------------TKAYVPQSP--WILTGNIRENILFGNQYDSCKYDRTVEACA 734
I G T V Q+P + + E++ FG + E
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE---EVEK 116
Query: 735 LVKDFELFASGDLTEIGERGI------NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVD 788
VK+ L +G G ++SGGQK+R+ IA + +I +LD+P S +D
Sbjct: 117 RVKE-------ALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
Query: 789 AHTGTQLFKDCLMGILKDK--SVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845
+Q+ K L+ L + +++ TH V+ +P AD + VM +G+I + G +E+
Sbjct: 170 PMGASQIMK--LLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227
|
Length = 275 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-12
Identities = 66/229 (28%), Positives = 104/229 (45%), Gaps = 36/229 (15%)
Query: 1270 RYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITK 1329
R +HL +V IS T + +G+VG +GSGKSTL A+ R++ G I D DI
Sbjct: 295 RTVDHLRAV-DGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352
Query: 1330 IGLHD---LRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWE--------ALDKCQLG 1378
+ + LR R+ ++ QDP G+L P + + Q+ E L +
Sbjct: 353 LSRKEMRPLRRRMQVVFQDPY-------GSLSP--RMTVGQIIEEGLRVHEPKLSAAERD 403
Query: 1379 DLVRA--KEEKLDSTVAENGEN-WSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG 1435
V +E LD + +S GQRQ + R L+ K +++LDE T SA D
Sbjct: 404 QRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPT----SALDR 459
Query: 1436 VIQK-IIS-----QEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEY 1477
+Q ++ Q+ + + I+H + V V+V+ DG+I E
Sbjct: 460 SVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQ 508
|
Length = 534 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 2e-12
Identities = 50/205 (24%), Positives = 100/205 (48%), Gaps = 21/205 (10%)
Query: 1266 NLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRI---VEPTMGSIII 1322
NL + Y + L +I+ K ++G +G GKST ++ R+ + G + I
Sbjct: 7 NLNLFYGKK--QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEI 64
Query: 1323 DNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGN------LDPLVQYSDKQ---VWEALD 1373
+ D+ + LR +G++ Q P +F ++ N L +++ D++ V + L
Sbjct: 65 EGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQ 124
Query: 1374 KCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT 1433
K L + V+ K + +N S GQ+Q C+ R L K +L+LDE T+++D +
Sbjct: 125 KVGLFEEVKDK-------LKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPIS 177
Query: 1434 DGVIQKIISQEFKDRTVVTIAHRIH 1458
GVI++++ + + +++ + H +
Sbjct: 178 SGVIEELLKELSHNLSMIMVTHNMQ 202
|
Length = 246 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 3e-12
Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 35/227 (15%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK--AYVPQSPWIL 707
L+ + L + G ++ + G G+GKS+LL + GE++ +G V Y+ Q P L
Sbjct: 19 LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEP-PL 77
Query: 708 TGN--IRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGER------------ 753
+ + ++ G EA AL+ D + +L + E
Sbjct: 78 DPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEE 137
Query: 754 -----GI--------NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCL 800
G ++SGG ++R+ +ARA+ ++ D+ LLD+P + +D + L +D L
Sbjct: 138 ALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWL-EDYL 196
Query: 801 MGILKDKSVLYVTHQVEFL-PAADIILVMENGRI-AQAGRFEELLKQ 845
+V+ V+H FL A IL ++ G++ G + L+Q
Sbjct: 197 KR--YPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQ 241
|
Length = 530 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 3e-12
Identities = 105/545 (19%), Positives = 218/545 (40%), Gaps = 47/545 (8%)
Query: 313 RKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIA 372
R+ S ++ A+ +G L+ F+ + ++ L+ FLG ++ ++
Sbjct: 9 RQNRWPFISVMALSLASGALGIGLLA----FINQALIETADTSLLVLPEFLGLLLLFMVS 64
Query: 373 QRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRIS-DFIF 431
G LG L S +K L + + S ++ ++ DV+ IS F
Sbjct: 65 SLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSR 124
Query: 432 YSNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQKRFQSKIMDAKD 491
+ + + + A Y+ + + L + +T+ + + R+ K + +D
Sbjct: 125 LPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMA-AARETED 183
Query: 492 NRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIF------ 545
+L+ K L L ++ E + I + R A F
Sbjct: 184 KLQNDYQTILEGRKELTLNR------ERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVN 237
Query: 546 WGSPTFISVVTFGACMLLGIQLTAGRVLSALA-TFRMLQDPIFNLPDLLSNIAQGKVSAD 604
W + + ++ + L + + V + + L+ P+ + +L + +V+ +
Sbjct: 238 WSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFN 297
Query: 605 RIAAYLQEDEIQRD--AVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMK 662
+IA L+ + D + P ++ +E+ N +F++ + + I L +KRG
Sbjct: 298 KIAK-LELAPYKADFPRPQAFPDWKT---LELRNVRFAYQDNAFH--VGPINLTIKRGEL 351
Query: 663 VAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQY- 721
V + G GSGKS+L + G Q +G + + G P S L LF +
Sbjct: 352 VFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK----PVSAEQLE---DYRKLFSAVFS 404
Query: 722 DSCKYDRTV--EACA----LVKDFELFASGDLTEIGERGI---NMSGGQKQRIQIARAVY 772
D +D+ + E A + K + T + + +S GQK+R+ + A+
Sbjct: 405 DYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALL 464
Query: 773 QDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--KSVLYVTHQVEFLPAADIILVMEN 830
++ DI +LD+ + D + F L+ +LK+ K++ ++H + AD +L M N
Sbjct: 465 EERDILVLDEWAADQDPAF-RREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRN 523
Query: 831 GRIAQ 835
G++++
Sbjct: 524 GQLSE 528
|
Length = 546 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 51/214 (23%), Positives = 90/214 (42%), Gaps = 25/214 (11%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK---------- 697
L + +V G AI G G+GK++LLS + GE +G V + G +
Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL 104
Query: 698 ----AYVPQSPWIL-----TGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLT 748
V S + +R+ +L G Y + A L L
Sbjct: 105 RKRIGLV--SSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAK 162
Query: 749 EIGERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFK--DCLMGILK 805
+ +R ++S G+++R+ IARA+ +D ++ +LD+P +D QL + L
Sbjct: 163 HLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPG 222
Query: 806 DKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGR 838
++L+VTH E +P L+++ G + G+
Sbjct: 223 APALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 3e-12
Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 59/210 (28%)
Query: 645 SSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------- 697
S + + +V+ G V I G VG+G++ L + G +G + + G
Sbjct: 11 SVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPR 70
Query: 698 -------AYVPQSP----WILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGD 746
AYVP+ +L ++ ENI +
Sbjct: 71 DAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-------------------------- 104
Query: 747 LTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD 806
+SGG +Q++ +AR + +D + +LD+P VD ++++ L+ L D
Sbjct: 105 ----------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYR--LIRELAD 152
Query: 807 --KSVLYVTHQVEFLPA-ADIILVMENGRI 833
K+VL ++ +++ L D ILVM GRI
Sbjct: 153 AGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 4e-12
Identities = 57/240 (23%), Positives = 111/240 (46%), Gaps = 25/240 (10%)
Query: 1265 HNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPT-----MGS 1319
+ + + Y +H LKNI+ + P + ++G +G GKST I+ + +++ G
Sbjct: 16 NGMNLWYGQH--HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGE 73
Query: 1320 III--DNVDITKIGLHDLRSRLGII-----PQDPTLFDGTVRGNLDPLVQ--YSDKQVWE 1370
+ N+ K+ L +LR +G++ P ++FD G P + + K++ E
Sbjct: 74 MNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYG---PRIHGTKNKKKLQE 130
Query: 1371 ALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD 1430
++K L D+ E K + + S GQ+Q C+ R L +L++DE T+++D
Sbjct: 131 IVEK-SLKDVALWDEVK--DRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
Query: 1431 SATDGVIQKIISQEFKDR-TVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERED 1488
+ I+++I + K++ T+V + H + SD G + E + K+ D
Sbjct: 188 PVSTRKIEELI-LKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPD 246
|
Length = 259 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 4e-12
Identities = 45/210 (21%), Positives = 98/210 (46%), Gaps = 36/210 (17%)
Query: 1266 NLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE--PTM---GSI 1320
NL + Y L +KN+ P + +G +G GKST+++ R+ + P G +
Sbjct: 15 NLNVYYGSFL--AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV 72
Query: 1321 IIDNVDI--TKIGLHDLRSRLGIIPQDPTLFDGTV-------------RGNLDPLVQYSD 1365
++ + ++R R+G++ Q P F ++ +G++D LV+ S
Sbjct: 73 TFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSL 132
Query: 1366 KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEA 1425
+Q L D V+ K + ++G + S GQ+Q C+ R + + ++++DE
Sbjct: 133 RQA-------ALWDEVKDK-------LKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEP 178
Query: 1426 TASVDSATDGVIQKIISQEFKDRTVVTIAH 1455
+++D + I++++ + + T++ + H
Sbjct: 179 CSALDPISTLRIEELMHELKEQYTIIIVTH 208
|
Length = 264 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 4e-12
Identities = 70/262 (26%), Positives = 122/262 (46%), Gaps = 34/262 (12%)
Query: 1239 LPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRT 1298
LP E V+ +P + N I Y E +K ++ + ++G +
Sbjct: 25 LPPERKKVSGGGKP--------HVVAKNFSIYYGEF--EAVKKVNADILSKYVTAIIGPS 74
Query: 1299 GSGKSTLIQAIFRIVE--P---TMGSIIIDNVDITKIGLHD--LRSRLGIIPQDPTLFDG 1351
G GKST ++AI R+ + P T G+++ D DI + LR ++G++ Q P F
Sbjct: 75 GCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK 134
Query: 1352 TVRGNL--DPLVQ-YSDKQ-----VWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQ 1403
++ N+ P + +DK+ V ++L K L D V ++LD +N S GQ
Sbjct: 135 SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV---SDRLD----KNALGLSGGQ 187
Query: 1404 RQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID- 1462
+Q C+ RTL + IL+LDE T+++D I+ +I + T++ + H +
Sbjct: 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRV 247
Query: 1463 SDLVLVLSDGRIAEYDSPTKLL 1484
SD + +G + E+ +PT L
Sbjct: 248 SDYTMFFYEGVLVEH-APTAQL 268
|
Length = 286 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 5e-12
Identities = 58/268 (21%), Positives = 116/268 (43%), Gaps = 30/268 (11%)
Query: 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP--TM 1317
G I +L++ Y +VL ++S + + ++G++G GK+TL++AI V+
Sbjct: 4 GGIRIDHLRVAY--GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 1318 GSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGN----LDPLVQYS---DKQVW 1369
G I I + D+T H + L ++ Q+ LF V N L ++V
Sbjct: 62 GRIAIADRDLTHAPPH--KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVA 119
Query: 1370 EALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASV 1429
+AL LGD +L S G +Q + R + + +L+LDE +++
Sbjct: 120 DALKLVGLGDAAAHLPAQL-----------SGGMQQRIAIARAIAIEPDVLLLDEPLSAL 168
Query: 1430 DSATDGVIQ---KIISQEFKDRTVVTIAH-RIHTVIDSDLVLVLSDGRIAEYDSPTKLLE 1485
D+ ++ + +E + T++ + H + + +D ++ DGR+A + P L +
Sbjct: 169 DANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228
Query: 1486 R-EDSFFSQLIKEYSMRSQNFNSVAGRP 1512
D F ++ + ++ + P
Sbjct: 229 APADGFAAEFLGAANILPAIALGITEAP 256
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 5e-12
Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 50/200 (25%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV---KISGTKAY------- 699
+ GI ++ ++ A+ G GSGKS+ L + +M T+ +++G Y
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSL----NRMNDTIDIARVTGQILYRGIDINR 91
Query: 700 --------------VPQSPWILTGNIRENILFG----NQYDSCKYDRTVE----ACAL-- 735
V Q P +I ENI F D D VE AL
Sbjct: 92 KEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD 151
Query: 736 -VKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQ 794
VKD ++ + + +SGGQ+QR+ IARA+ DI L+D+P SA+D + Q
Sbjct: 152 QVKD----------DLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQ 201
Query: 795 LFKDCLMGILKDKSVLYVTH 814
L ++ + + K+ +++ VTH
Sbjct: 202 L-EETMFELKKNYTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 5e-12
Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 26/221 (11%)
Query: 1279 LKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS- 1337
+K +S T + + ++G GSGKSTL + + ++EPT G I+I++ + G + RS
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPL-HFGDYSFRSK 87
Query: 1338 RLGIIPQDP-----------TLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEE 1386
R+ +I QDP + D +R N D + KQ++E L L
Sbjct: 88 RIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL--------- 138
Query: 1387 KLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKII--SQE 1444
L + GQ+Q L R L+ + I++ DEA AS+D + + ++ QE
Sbjct: 139 -LPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQE 197
Query: 1445 FKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484
+ + + + I + SD VLV+ +G + E S +L
Sbjct: 198 KQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 5e-12
Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 31/208 (14%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709
L I L++ G V + G GSGK++LL+ I G G++K+ G + Y ++
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV-- 78
Query: 710 NIRENILF----GNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINM-------- 757
+R NI + N + V+ EL + E ER M
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMAL-----ELQPNLSYQEARERARAMLEAVGLGD 133
Query: 758 ---------SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK- 807
SGGQKQR+ IARA+ + L D+P +A+D+ +G + + + + +++
Sbjct: 134 HLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVV-ELMQKLAREQG 192
Query: 808 -SVLYVTHQVEFLPAADIILVMENGRIA 834
++L VTH L AD I+ ME+G++
Sbjct: 193 CTILIVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 5e-12
Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 40/224 (17%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWI--- 706
L G+ L + G K A+ G G+GKS+LL + G G VK+ G + W+
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80
Query: 707 ------------LTGNIRENILFGNQYDSCKYD----RTVEACALVKDFELFASGDLTEI 750
+ + +++ FG D R EA V + +
Sbjct: 81 VGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAV---------RMWDF 131
Query: 751 GERG-INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL----- 804
++ ++S GQK+R+ IA + D D+ +LD+P + +D ++ LM IL
Sbjct: 132 RDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRG-----QETLMEILDRLHN 186
Query: 805 KDKSVLYVTHQVEF-LPAADIILVMENGRIAQAGRFEELLKQNI 847
+ K+V+ TH V+ AD ++V++ GR+ G L ++I
Sbjct: 187 QGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDI 230
|
Length = 274 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 6e-12
Identities = 54/206 (26%), Positives = 101/206 (49%), Gaps = 26/206 (12%)
Query: 1294 VVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS----RLGIIPQD---- 1345
++G +GSGKST+++ + R++EPT G ++ID VDI KI +LR ++ ++ Q
Sbjct: 59 IMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118
Query: 1346 --PTLFDGTVRGNLDPLVQYSDKQ--VWEALDKCQLGDLVRAKEEKLDSTVAENGENWSV 1401
T+ D T G + +++ +AL + L + + ++L S
Sbjct: 119 PHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDEL-----------SG 167
Query: 1402 GQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQK--IISQEFKDRTVVTIAHRIHT 1459
G RQ L R L IL++DEA +++D +Q + Q RT+V I+H +
Sbjct: 168 GMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDE 227
Query: 1460 VID-SDLVLVLSDGRIAEYDSPTKLL 1484
+ D + ++ +G + + +P ++L
Sbjct: 228 AMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 6e-12
Identities = 58/234 (24%), Positives = 101/234 (43%), Gaps = 24/234 (10%)
Query: 1262 ISFHNLQIRYAEHL-------PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE 1314
+ ++ Y VL N+S + + VG++GR+G GKSTL + + + +
Sbjct: 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62
Query: 1315 PTMGSIIIDNVDITKI---GLHDLRSRLGIIPQD-PTLFDG--TVRGNL-DPLVQYSDKQ 1367
P G++ D+ ++ R + ++ QD P+ + TVR + +PL +
Sbjct: 63 PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLD 122
Query: 1368 VWEALDKCQ-LGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEAT 1426
E + L D+V + E D + S GQ Q + R L K ++VLDEA
Sbjct: 123 ESEQKARIAELLDMVGLRSEDADKLPRQ----LSGGQLQRINIARALAVKPKLIVLDEAV 178
Query: 1427 ASVDSATDGVIQKIIS---QEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAE 1476
+++D VI +++ Q F + I H + V V V+ G+I E
Sbjct: 179 SNLDMVLQAVILELLRKLQQAF-GTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 6e-12
Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 44/197 (22%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCI-----LGEIQKMAGTVKISGTKAYVP--- 701
L I +++ + A G G GKS+LL C L + ++ G +++ G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100
Query: 702 ------------QSPWILTGNIRENILFGNQY----DSCKYDRTVE----ACAL---VKD 738
Q P +I EN+++G + + D VE AL VKD
Sbjct: 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD 160
Query: 739 FELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKD 798
+ E +SGGQ+QR+ IARA+ + ++ LLD+P SA+D + L +
Sbjct: 161 ----------RLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPI--STLKIE 208
Query: 799 CLMGILKDK-SVLYVTH 814
L+ LK K +++ VTH
Sbjct: 209 ELITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 7e-12
Identities = 67/246 (27%), Positives = 117/246 (47%), Gaps = 24/246 (9%)
Query: 1260 GTISFHNLQIRYAEHLP---SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPT 1316
I N+ YA+ P L N S TF K V+G TGSGKST+IQ ++
Sbjct: 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 1317 MGSIIIDN----VDITKIG-LHDLRSRLGIIPQDP--TLFDGTVRGNL--DPLVQYSDKQ 1367
G I+ + ++ KI + LR +G++ Q P LF T+ ++ P+ +KQ
Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124
Query: 1368 VWEALDKC-QLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEAT 1426
EA K +L LV+ E+ + + E S GQ++ L + + LVLDE T
Sbjct: 125 --EAYKKVPELLKLVQLPEDYVKRSPFE----LSGGQKRRVALAGIIAMDGNTLVLDEPT 178
Query: 1427 ASVDSATDGVIQKI---ISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTK 1482
+D + + +++E+K R ++ + H + V+ +D V+V+ +G++ SP +
Sbjct: 179 GGLDPKGEEDFINLFERLNKEYKKR-IIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237
Query: 1483 LLERED 1488
+ ++
Sbjct: 238 IFSNQE 243
|
Length = 289 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 7e-12
Identities = 65/231 (28%), Positives = 105/231 (45%), Gaps = 52/231 (22%)
Query: 646 SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG---TKA---- 698
S+ +D + L +K+G V + G G GK+++L + G + G + I G T
Sbjct: 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQ 77
Query: 699 ----YVPQS----PWILTGNIRENILFG----NQYDSCKYDRTVEACALVKDFELFASGD 746
V QS P + ++ EN+ +G + R EA LV D
Sbjct: 78 RDICMVFQSYALFPHM---SLGENVGYGLKMLGVPKEERKQRVKEALELV---------D 125
Query: 747 LTEIGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK 805
L +R ++ +SGGQ+QR+ +ARA+ + L D+P S +DA+ L ++
Sbjct: 126 LAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN---------LRRSMR 176
Query: 806 DK----------SVLYVTH-QVEFLPAADIILVMENGRIAQAGRFEELLKQ 845
+K + LYVTH Q E +D ++VM G+I Q G +EL +Q
Sbjct: 177 EKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227
|
Length = 351 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 7e-12
Identities = 66/239 (27%), Positives = 117/239 (48%), Gaps = 16/239 (6%)
Query: 1262 ISFHNLQIRYAEHLPSVLK---NISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMG 1318
I N+ RY V+K N+S + G+VG +G+GK+TL + I ++EPT G
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 1319 SIII----DNVDITKIGLHDLRSR----LGIIPQDPTLF-DGTVRGNLDPLVQYSDKQVW 1369
+ + + VD+TK G D R R +GI+ Q+ L+ TV NL +
Sbjct: 340 EVNVRVGDEWVDMTKPGP-DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL 398
Query: 1370 EALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASV 1429
+ +V EEK + + + + S G+R L + L+K+ I++LDE T ++
Sbjct: 399 ARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTM 458
Query: 1430 DSATDGVIQKII--SQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485
D T + I ++E ++T + ++H + V+D D ++ DG+I + P +++E
Sbjct: 459 DPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 7e-12
Identities = 56/232 (24%), Positives = 110/232 (47%), Gaps = 25/232 (10%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PT 1316
IS ++ + Y + L IS F ++ ++G +G GKST ++ + R+ +
Sbjct: 5 ISAKDVHLSYGNY--EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKI 62
Query: 1317 MGSIIIDNVDI--TKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYS--------DK 1366
G I + +I +K+ L +LR +G++ Q PT F +V N+ ++ + D+
Sbjct: 63 TGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQ 122
Query: 1367 QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEAT 1426
+V E+L + + KE K + N + +S GQ+Q C+ R L + +++LDE T
Sbjct: 123 RVEESLKQAAIW-----KETK--DNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPT 175
Query: 1427 ASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEY 1477
+++D + I++ + + T + + H + SD L +G + E
Sbjct: 176 SALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA 227
|
Length = 251 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (171), Expect = 8e-12
Identities = 53/158 (33%), Positives = 87/158 (55%), Gaps = 11/158 (6%)
Query: 700 VPQSPWILTGNIRENILFGNQYDSCKYD--RTVEACALVKDFELFASGDLTEIGERGINM 757
V Q P + +I ENI FG + D+ + D R + A+ + E + T +G G ++
Sbjct: 1301 VSQEPMLFNMSIYENIKFGKE-DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSL 1359
Query: 758 SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DKSVLYVTHQ 815
SGGQKQRI IARA+ ++ I LLD+ S++D+++ +L + ++ I DK+++ + H+
Sbjct: 1360 SGGQKQRIAIARALLREPKILLLDEATSSLDSNS-EKLIEKTIVDIKDKADKTIITIAHR 1418
Query: 816 VEFLPAADIILVMEN----GRIAQA-GRFEELLKQNIG 848
+ + +D I+V N G QA G EELL G
Sbjct: 1419 IASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDG 1456
|
Length = 1466 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 8e-12
Identities = 72/260 (27%), Positives = 118/260 (45%), Gaps = 41/260 (15%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK---------- 697
++G+ V G + G G+GKS++ ILG AG + + G
Sbjct: 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARA 114
Query: 698 --AYVPQSPWI-LTGNIRENILFGNQYDSCKYDRTVEAC--ALVKDFELFASGDLTEIGE 752
VPQ + L +REN+L +Y R +EA +L++ L + D
Sbjct: 115 RIGVVPQFDNLDLEFTVRENLLVFGRYFGMS-TREIEAVIPSLLEFARLESKADA----- 168
Query: 753 RGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLY 811
R ++SGG K+R+ +ARA+ D + +LD+P + +D H L + L +L + K++L
Sbjct: 169 RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKTILL 227
Query: 812 VTHQVEFLPAA----DIILVMENGRIAQAGRFEELLKQNIGFEVL--VGAHSQALESVLT 865
TH F+ A D + V+E GR GR L+ ++IG +V+ G L S++
Sbjct: 228 TTH---FMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIEIYGGDPHELSSLVK 284
Query: 866 -----VETSSRT----SQDP 876
+E S T + DP
Sbjct: 285 PYARRIEVSGETLFCYAPDP 304
|
Length = 340 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 9e-12
Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 11/179 (6%)
Query: 1278 VLKNISCTF-PGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLR 1336
+L NIS + G K+ + G +G GKSTL++ + ++ PT G+++ + DI+ + R
Sbjct: 22 ILNNISFSLRAGEFKL-ITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYR 80
Query: 1337 SRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVR--AKEEKLDSTVAE 1394
++ Q PTLF TV NL Q ++Q L DL R + L +AE
Sbjct: 81 QQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP---AIFLDDLERFALPDTILTKNIAE 137
Query: 1395 NGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTI 1453
S G++Q L R L +L+LDE T+++D + + +II + +++ + +
Sbjct: 138 ----LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVL 192
|
Length = 225 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 43/222 (19%)
Query: 649 TLDGIQLKVKRGMKVAICGTVGSGKSSLLSC------------ILGEI----QKMAGT-- 690
L I + + + A+ G G GKS+LL C I G+I + + +
Sbjct: 21 ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80
Query: 691 --VKISGTKAYVPQSPWILTGNIRENILFG----NQYDSCKYDRTVEAC----AL---VK 737
V + V Q P +I EN+ +G + + D VE AL VK
Sbjct: 81 DVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK 140
Query: 738 DFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFK 797
D + + +++SGGQ+QR+ IAR + + ++ L+D+P SA+D T +
Sbjct: 141 D----------RLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP-IATAKIE 189
Query: 798 DCLMGILKDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGR 838
D + + K+ +V+ VTH ++ +D M G++ + +
Sbjct: 190 DLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDK 231
|
Length = 253 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 29/206 (14%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK---------AYV 700
LD I V++G + G G+GK++ + ILG I +G V G Y+
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYL 75
Query: 701 PQSPWILTG-----NIRENIL-FGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERG 754
P+ G + + ++ K + ++ EL +E +
Sbjct: 76 PEE----RGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLEL------SEYANKR 125
Query: 755 IN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYV 812
+ +S G +Q++Q AV D ++ +LD+PFS +D +L KD + + K+V+
Sbjct: 126 VEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIRELARAGKTVILS 184
Query: 813 THQVEFLPA-ADIILVMENGRIAQAG 837
THQ+E + D +L++ GR G
Sbjct: 185 THQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-11
Identities = 65/256 (25%), Positives = 111/256 (43%), Gaps = 60/256 (23%)
Query: 629 EFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCI-----LGE 683
+F +E VN + + S+ + G+ LK+ + A+ G G GKS+LL L E
Sbjct: 2 KFAIETVNLRVYY---GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNE 58
Query: 684 IQKMAGTVKISGTKAYVPQSPWI------------------LTGNIRENILFGNQYDSC- 724
++ G V++ G Y P I LT I +N+ G + +
Sbjct: 59 EARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLT--IYDNVAIGVKLNGLV 116
Query: 725 ----KYDRTVE----ACAL---VKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQ 773
+ D VE AL VKD + + N+SGGQ+QR+ IARA+
Sbjct: 117 KSKKELDERVEWALKKAALWDEVKD----------RLNDYPSNLSGGQRQRLVIARALAM 166
Query: 774 DADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-----ADIILVM 828
I L+D+P + +D GT ++ L + K+ +++ VTH PA +D + +
Sbjct: 167 KPKILLMDEPTANIDP-VGTAKIEELLFELKKEYTIVLVTHS----PAQAARVSDYVAFL 221
Query: 829 ENGRIAQAGRFEELLK 844
G++ + G ++ +
Sbjct: 222 YLGKLIEVGPTRKVFE 237
|
Length = 253 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 1e-11
Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 46/231 (19%)
Query: 655 LKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG---TKAYVPQSPWI----- 706
L V+RG +VAI G G+GKS+LL+ I G + +G++ ++G T + P
Sbjct: 20 LTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQE 79
Query: 707 ------LTGNIRENILFG-------NQYDSCKYDRTVEACALVKDFELFASGDLTEIGER 753
LT + +NI G N K +
Sbjct: 80 NNLFSHLT--VAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG--------- 128
Query: 754 GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDA---HTGTQLFKD-CLMGILKDKSV 809
+SGGQ+QR+ +AR + ++ I LLD+PFSA+D L C + ++
Sbjct: 129 --QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVC---QERQLTL 183
Query: 810 LYVTHQVEFLPAADII---LVMENGRIAQAGRFEELLKQNIGFEVLVGAHS 857
L V+H +E AA I LV+ +GRIA G +ELL L+G S
Sbjct: 184 LMVSHSLE--DAARIAPRSLVVADGRIAWDGPTDELLSGKASASALLGIKS 232
|
Length = 232 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 23/235 (9%)
Query: 1265 HNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN 1324
NL R+ + + + NIS T P G++G G+GKSTL++ I I+ PT G II D
Sbjct: 4 KNLSKRFGKQ--TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG 61
Query: 1325 VDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLD---PLVQYSDKQVWEALDKCQLGDL 1380
T+ DL +G + + P L++ T R NL L+ D ++ E L+ L +
Sbjct: 62 HPWTR---KDLHK-IGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNT 117
Query: 1381 VRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKI 1440
+ K ++ +S+G +Q + LL +L+LDE T +D ++++
Sbjct: 118 GKKKAKQ-----------FSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELREL 166
Query: 1441 ISQEFKDRTVVTIAHRIHTVID--SDLVLVLSDGRIAEYDSPTKLLEREDSFFSQ 1493
I + V ++ I + + +D + ++S+G + K E F
Sbjct: 167 IRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINKSENLEKLFVEV 221
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 2e-11
Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 47/220 (21%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
+L+ +S P + V+GR G GK+TL++ + ++ GSI +D DITK+ H+ R+
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE-RA 73
Query: 1338 RLGI--IPQD----PTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEK---- 1387
R GI +PQ P L TV NL G + +
Sbjct: 74 RAGIAYVPQGREIFPRL---TVEENL------------------LTGLAALPRRSRKIPD 112
Query: 1388 --------LDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEAT----ASVDSATDG 1435
L + G + S GQ+Q + R L+ + +L+LDE T S+
Sbjct: 113 EIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGR 172
Query: 1436 VIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRI 1474
VI+++ ++ ++ + + + +D V+ GR+
Sbjct: 173 VIRRLRAE--GGMAILLVEQYLDFARELADRYYVMERGRV 210
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-11
Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 22/168 (13%)
Query: 1276 PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN--VDITKIGLH 1333
P VLK ++ + + ++G G+GKSTL+ + ++ P G+++ID +D ++ GL
Sbjct: 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLL 64
Query: 1334 DLRSRLGIIPQDP--TLFDGTVRG-------NLDPLVQYSDKQVWEALDKCQLGDLVRAK 1384
+ R R+G++ QDP LF V NL +++V EAL L
Sbjct: 65 ERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGL---- 120
Query: 1385 EEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSA 1432
E+ + S G+++ + + + +L+LDE TA +D A
Sbjct: 121 RERPTHCL-------SGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA 161
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-11
Identities = 56/237 (23%), Positives = 101/237 (42%), Gaps = 23/237 (9%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I +L RY + LK +S + P K ++G G+GKSTL+ + I P G +
Sbjct: 5 IEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDP--TLFDGTVRG-------NLDPLVQYSDKQVWEAL 1372
+ ++ +RS++G++ QDP +F TV N+ +++V EAL
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEAL 123
Query: 1373 DKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSA 1432
++ D L S GQ++ + L ++VLDE A +D
Sbjct: 124 KAVRMWDFRDKPPYHL-----------SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPR 172
Query: 1433 TDGVIQKIISQEFKDRTVVTIA-HRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE 1487
+ +I+ + V +A H + + +D V+VL +GR+ + L + +
Sbjct: 173 GQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDED 229
|
Length = 274 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 70/261 (26%), Positives = 112/261 (42%), Gaps = 43/261 (16%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
+DG+ V+RG + G G+GK++ L +LG AG++ + G
Sbjct: 23 VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82
Query: 698 AYVPQ----SPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGER 753
VPQ P +REN+L +Y + +F + ++GE
Sbjct: 83 GVVPQFDNLDP---DFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGE- 138
Query: 754 GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYV 812
+SGG K+R+ +ARA+ D D+ +LD+P + +D L + L +L + K++L
Sbjct: 139 ---LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ-ARHLMWERLRSLLARGKTILLT 194
Query: 813 THQVEFLPAA----DIILVMENGRIAQAGRFEELLKQNIGFEV--LVGAHSQALESVLT- 865
TH F+ A D + V+E GR G L++ IG +V + G AL L
Sbjct: 195 TH---FMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDVIEIYGPDPVALRDELAP 251
Query: 866 ----VETSSRT----SQDPTP 878
E S T +DP P
Sbjct: 252 LAERTEISGETLFCYVRDPEP 272
|
Length = 306 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 66/227 (29%), Positives = 109/227 (48%), Gaps = 38/227 (16%)
Query: 1279 LKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRI--VEPTM---GSIIIDNVDI--TKIG 1331
L ++S F + ++G +GSGKSTL+++I R+ + P + GSI+ + +I +
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 1332 LHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYS-------DKQVW-EALDKCQLGDLV-- 1381
DLR +G++ Q P F ++ N V Y DKQV EA++K G +
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYEN----VVYGLRLKGIKDKQVLDEAVEKSLKGASIWD 136
Query: 1382 RAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKII 1441
K+ DS + +G GQ+Q C+ R L I++LDE T+++D + G I++ +
Sbjct: 137 EVKDRLHDSALGLSG-----GQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETL 191
Query: 1442 SQEFKDRTVVTIAH------RIHTVIDSDLVLVLSDGRIAEYDSPTK 1482
D T++ + RI SD DG + EY+ TK
Sbjct: 192 LGLKDDYTMLLVTRSMQQASRI-----SDRTGFFLDGDLIEYND-TK 232
|
Length = 252 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-11
Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 26/220 (11%)
Query: 645 SSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--------T 696
S L GI + G A+ G G+GKS+L+ I G + +GT++I G
Sbjct: 22 SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPA 81
Query: 697 KAY------VPQSPWILTG-NIRENILFGNQYDSCKYDRTVEACA-LVKDFELFASGDLT 748
KA+ VPQ P + +++ENILFG + + A L +L +S
Sbjct: 82 KAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSL 141
Query: 749 EIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKS 808
E+ +R Q ++I R + +D+ I +LD+P +++ +LF + +
Sbjct: 142 EVADR---------QIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVG 192
Query: 809 VLYVTHQV-EFLPAADIILVMENGRIAQAGRFEELLKQNI 847
+++++H++ E AD I VM +G IA +G+ +L +I
Sbjct: 193 IVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDI 232
|
Length = 510 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 3e-11
Identities = 53/203 (26%), Positives = 93/203 (45%), Gaps = 38/203 (18%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCI--LGEIQKMA---GTVKISGTKAYVP--- 701
L G+ + + A+ G G GKS+ L C+ + + K A G+V++ G Y
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 702 ------------QSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTE 749
QSP +IRENI +G + + + A L +D + A +L E
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHG-DINTGLLARLLGRD-DKDAEDELVE 178
Query: 750 ---------------IGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQ 794
+ + + +SGGQ+QR+ IAR + D ++ L+D+P SA+D T
Sbjct: 179 RSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP-IATS 237
Query: 795 LFKDCLMGILKDKSVLYVTHQVE 817
+D + + ++ +V+ VTH ++
Sbjct: 238 KIEDLIEELAEEYTVVVVTHNMQ 260
|
Length = 305 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-11
Identities = 56/242 (23%), Positives = 108/242 (44%), Gaps = 30/242 (12%)
Query: 1262 ISFHNLQIRYAEHLPSV--LKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
+ + R+ P V ++S + + ++G G+GKSTL++ +F + +P G
Sbjct: 5 LEMRGITKRF----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 1320 IIID--NVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQ 1376
I +D V I +R +G++ Q L TV N ++ + +D+ Q
Sbjct: 61 IRVDGKEVRIKSPR-DAIRLGIGMVHQHFMLVPTLTVAEN---IILGLEPSKGGLIDRRQ 116
Query: 1377 LGDLVRAKEEK------LDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASV- 1429
++ E+ D+ VA+ SVG++Q + + L + + +L+LDE TA +
Sbjct: 117 ARARIKELSERYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLT 172
Query: 1430 DSATDGVIQKIISQEFKD--RTVVTIAHRIHTVID-SDLVLVLSDGR-IAEYDSPTKLLE 1485
D + + I + +T++ I H++ V+ +D V VL G+ + D + E
Sbjct: 173 PQEADELFE--ILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAETTE 230
Query: 1486 RE 1487
E
Sbjct: 231 EE 232
|
Length = 501 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 3e-11
Identities = 60/218 (27%), Positives = 101/218 (46%), Gaps = 34/218 (15%)
Query: 646 SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCI-LGEIQKMAGTVKISGTK---AYVP 701
+ L I L G + + G G+GKSSLL + L E+ + +GT+ I+G + P
Sbjct: 14 AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGNHFDFSKTP 72
Query: 702 QSPWILTGNIRENI-LFGNQYD--------------SCKYDRTVEACALVKDFELFASGD 746
I ++R N+ + QY+ C+ + AL + +L
Sbjct: 73 SDKAIR--DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLR 130
Query: 747 LTEIGER-GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK 805
L +R +++SGGQ+QR+ IARA+ + + L D+P +A+D Q+ I+K
Sbjct: 131 LKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS-----IIK 185
Query: 806 DKS-----VLYVTHQVEFL-PAADIILVMENGRIAQAG 837
+ + + VTH+VE A ++ MENG I + G
Sbjct: 186 ELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 56/234 (23%), Positives = 108/234 (46%), Gaps = 27/234 (11%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I NL +Y + ++ +S + G++G G+GK+T I+ + +++PT G
Sbjct: 1 IEVENLVKKYGDFE--AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLD---PLVQYS----DKQVWEALD 1373
+ D+ + ++R R+GI+ QD ++ D T NL L +++ E LD
Sbjct: 59 VAGHDVVR-EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLD 117
Query: 1374 KCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT 1433
L + ++L T +S G R+ + R+L+ + +L LDE T +D T
Sbjct: 118 FVGLLE----AADRLVKT-------YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQT 166
Query: 1434 DGVIQKIISQEFKDRTVVTIAHRIHTVIDSDL----VLVLSDGRIAEYDSPTKL 1483
+ + I ++ K+ +TI H + +++ V ++ GRI +P +L
Sbjct: 167 RAHVWEYI-EKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 4e-11
Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 39/223 (17%)
Query: 1270 RYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITK 1329
+ AE LK+IS ++VG++G G+GKSTL++ I I +PT G + + +
Sbjct: 36 KVAEFW--ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKV-TGKVAP 92
Query: 1330 -IGLHDLRSRLGIIPQ----DPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAK 1384
I L G P+ + G + G + D++V E ++ +LGD
Sbjct: 93 LIELG-----AGFDPELTGRENIYLRGLILGLTR---KEIDEKVDEIIEFAELGD----- 139
Query: 1385 EEKLDSTVAENGENWSVGQ--RQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIIS 1442
+D V + +S G R F + + + IL+LDE A D+A +K +
Sbjct: 140 --FIDQPV----KTYSSGMYARLAFSVATHV--EPDILLLDEVLAVGDAA---FQEKCLE 188
Query: 1443 --QEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSP 1480
E K++T+V ++H + + D + L G+I SP
Sbjct: 189 RLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSP 231
|
Length = 249 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 4e-11
Identities = 62/243 (25%), Positives = 113/243 (46%), Gaps = 34/243 (13%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I+ N+ Y + VL ++S P ++G G+GKSTL+ + R+++ G I
Sbjct: 2 ITIENVSKSYGTKV--VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQ-----YS-------DKQ-V 1368
ID +++T +L +L I+ Q+ + R + LV YS D++ +
Sbjct: 60 IDGLELTSTPSKELAKKLSILKQENHI---NSRLTVRDLVGFGRFPYSQGRLTKEDRRII 116
Query: 1369 WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATAS 1428
EA++ L DL + LD S GQRQ + L + + ++LDE +
Sbjct: 117 NEAIEYLHLEDL---SDRYLDEL--------SGGQRQRAFIAMVLAQDTDYVLLDEPLNN 165
Query: 1429 VDSATDGVIQKIISQ---EFKDRTVVTIAHRIH-TVIDSDLVLVLSDGRIAEYDSPTKLL 1484
+D I KI+ + E +T+V + H I+ SD ++ L +G++ + SP +++
Sbjct: 166 LDMKHSVQIMKILRRLADELG-KTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224
Query: 1485 ERE 1487
+ E
Sbjct: 225 QPE 227
|
Length = 252 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 4e-11
Identities = 58/267 (21%), Positives = 115/267 (43%), Gaps = 61/267 (22%)
Query: 1257 PDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPT 1316
PD +++ Y L L ++ P +K + +G +G GKSTL++ R+ +
Sbjct: 16 PDHSVFEVEGVKVFYGGFL--ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLI 73
Query: 1317 MGSII-------IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTV-------------RGN 1356
G+ + N+ ++I LR ++G++ Q P F ++ +GN
Sbjct: 74 PGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGN 133
Query: 1357 LDPLVQYSDKQ--VWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLL 1414
LD LV+ S ++ +WE + ++KL E G S GQ+Q C+ R +
Sbjct: 134 LDELVEDSLRRAAIWEEV------------KDKLK----EKGTALSGGQQQRLCIARAIA 177
Query: 1415 KKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRI 1474
K +L++DE +++D + ++++ + + T++ + H + R+
Sbjct: 178 MKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQA-----------SRV 226
Query: 1475 AEYDSPTKLLEREDSFFSQLIKEYSMR 1501
A++ +FF+ I EY R
Sbjct: 227 ADW----------TAFFNTEIDEYGKR 243
|
Length = 274 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 4e-11
Identities = 49/211 (23%), Positives = 100/211 (47%), Gaps = 27/211 (12%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG-LHDLR 1336
L +++ + + ++GR GSGKST+ + + ++ P+ G + +D +D + L D+R
Sbjct: 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIR 84
Query: 1337 SRLGIIPQDP------TLFDGTVR---GNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEK 1387
++ G++ Q+P T+ + V NL + ++V E+L K + + R
Sbjct: 85 NKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHL 144
Query: 1388 LDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD-SATDGVIQKIISQEFK 1446
L S GQ+Q + L + ++ DE TA +D S V+ I +E
Sbjct: 145 L-----------SGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTI--KELN 191
Query: 1447 DR---TVVTIAHRIHTVIDSDLVLVLSDGRI 1474
+ T++ I H + +++D ++V+ G++
Sbjct: 192 KKYGITIILITHYMEEAVEADRIIVMDSGKV 222
|
Length = 280 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 5e-11
Identities = 47/204 (23%), Positives = 90/204 (44%), Gaps = 16/204 (7%)
Query: 1293 GVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDG- 1351
G +G G+GK+T I+ + ++ PT G+ + D+ + +R +GI+PQ ++ +
Sbjct: 23 GFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDL 81
Query: 1352 TVRGNLDPLVQYSDKQVWEALDKC----QLGDLVRAKEEKLDSTVAENGENWSVGQRQLF 1407
T R NL+ + + EA ++ +L +L A + + +S G R+
Sbjct: 82 TGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPV--------GTYSGGMRRRL 133
Query: 1408 CLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK-DRTVVTIAHRIHTVID-SDL 1465
+ +L+ + +L LDE T +D T I I + T++ H + D
Sbjct: 134 DIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDR 193
Query: 1466 VLVLSDGRIAEYDSPTKLLEREDS 1489
+ ++ GRI +P +L R
Sbjct: 194 IAIIDHGRIIAEGTPEELKRRLGK 217
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 6e-11
Identities = 60/221 (27%), Positives = 94/221 (42%), Gaps = 36/221 (16%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAI--FRIVEPTMGSIIIDNVDITKIGLHDL 1335
+LK ++ T + ++G GSGKSTL I E T G I+ D DI ++ +
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDE- 77
Query: 1336 RSRLGIIP--QDPTLFDG-----------TVRGNLDPLVQYSDKQVWEALDKCQLGDLVR 1382
R+R GI Q P G R ++ K++ E + +
Sbjct: 78 RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAEL------LG 131
Query: 1383 AKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIIS 1442
EE L+ V E +S G+++ + + LL + + +LDE DS D KI++
Sbjct: 132 LDEEFLERYV---NEGFSGGEKKRNEILQLLLLEPKLAILDE----PDSGLDIDALKIVA 184
Query: 1443 QEF-----KDRTVVTIAH--RIHTVIDSDLVLVLSDGRIAE 1476
+ + R V+ I H R+ I D V VL DGRI +
Sbjct: 185 EGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK 225
|
Length = 251 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 7e-11
Identities = 104/504 (20%), Positives = 202/504 (40%), Gaps = 44/504 (8%)
Query: 984 LLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNR 1043
LL++ + ++ S L + G KL + + + P+ + + R+L
Sbjct: 58 LLLFMVSSLISQL-------GLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAG 110
Query: 1044 ASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIP 1103
++D + + RL +II LG+ ++ ++ ++F++ + + IW ++
Sbjct: 111 LTSDVRNISFAFS-RLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGG--FVL 167
Query: 1104 TARELARLAEIQRA--PILHHFAESLAGAA--TIHAFDQEDRFTNANLSLIDNHSRPWFH 1159
AR +A + + + + L G T++ E N L ++ + H
Sbjct: 168 MARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNN----LYIPDAQEYRH 223
Query: 1160 NVSAMEWLCFRLNLLSNFVF--AFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQA--- 1214
++ SN + LV + L G S +A T + L L+
Sbjct: 224 HIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGW--ASTN-VAATIVLVLLFLRTPLL 280
Query: 1215 SIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEH 1274
S + + ++ +I + P +A P +PD T+ N++ Y ++
Sbjct: 281 SAVGILPTLLTAQVAFNKIAKLELAPYKADFPR-----PQAFPDWKTLELRNVRFAYQDN 335
Query: 1275 LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHD 1334
V I+ T + V ++G GSGKSTL + + +P G I++D ++ L D
Sbjct: 336 AFHV-GPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLED 394
Query: 1335 LRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAE 1394
R + D LFD + Q +K W L + +L + + +
Sbjct: 395 YRKLFSAVFSDYHLFDQLLGPEGKASPQLIEK--W--LQRLELAHKTSLNDGRFSNL--- 447
Query: 1395 NGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKD--RTVVT 1452
S GQ++ L LL++ ILVLDE A D A +++ K+ +T+
Sbjct: 448 ---KLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFA 504
Query: 1453 IAHRIHTVIDSDLVLVLSDGRIAE 1476
I+H H I +D +L + +G+++E
Sbjct: 505 ISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 7e-11
Identities = 50/218 (22%), Positives = 97/218 (44%), Gaps = 39/218 (17%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKA----------- 698
+ G+ +V+RG + G G+GK++ + + ++ +G ++G
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRI 75
Query: 699 -YVPQSPWI---LTGNIRENI-----LFGNQYDSCKYDRTVEACALVKDFELFASGDLTE 749
V Q + LTG EN+ L+G + ++ EL L E
Sbjct: 76 GIVFQDLSVDDELTG--WENLYIHARLYG--VPGAERRERID--------ELLDFVGLLE 123
Query: 750 IGERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK- 807
+R + SGG ++R++IAR++ ++ LD+P +D T +++ + LK++
Sbjct: 124 AADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWE--YIEKLKEEF 181
Query: 808 --SVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEEL 842
++L TH +E D + ++++GRI G EEL
Sbjct: 182 GMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 8e-11
Identities = 68/247 (27%), Positives = 115/247 (46%), Gaps = 35/247 (14%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSS---LLSCILGEIQKMA 688
VE + F++ P+S P L+ I + RG A+ G GSGKS+ L++ +L
Sbjct: 6 VEFKHVSFTY-PDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 689 GTVKISGTKAYVPQSPWILTGNIREN--ILF---GNQY------DSCKY---DRTV---E 731
+ + G ++ W +IRE I+F NQ+ D + +R V E
Sbjct: 65 SKITVDGIT-LTAKTVW----DIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPE 119
Query: 732 ACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHT 791
+V+D L G L I N+SGGQKQR+ IA + + I +LD+ S +D
Sbjct: 120 MIKIVRDV-LADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAG 178
Query: 792 GTQLFKDCLMGILKDK--SVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLK----- 844
Q+ K + + K +V+ +TH ++ AD +LV+++G++ G E+
Sbjct: 179 KEQILK-LIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSKVEML 237
Query: 845 QNIGFEV 851
+ IG ++
Sbjct: 238 KEIGLDI 244
|
Length = 282 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 9e-11
Identities = 56/224 (25%), Positives = 99/224 (44%), Gaps = 21/224 (9%)
Query: 1266 NLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNV 1325
+L + Y S L+++S T + V V+G +G GK+TL+ I V P+ GSI ++
Sbjct: 8 HLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR 67
Query: 1326 DITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQLGDLVR-- 1382
I G + G++ Q+ L V N V + + ++K Q ++
Sbjct: 68 RIEGPG-----AERGVVFQNEALLPWLNVIDN----VAFGLQLR--GIEKAQRREIAHQM 116
Query: 1383 AKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIIS 1442
L+ + S G RQ + R L + +L+LDE ++D+ T +Q+++
Sbjct: 117 LALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLL 176
Query: 1443 QEFKDR--TVVTIAHRIH--TVIDSDLVLVLS--DGRIAEYDSP 1480
+++ V+ I H I + + LV VLS GR+ E
Sbjct: 177 DLWQETGKQVLLITHDIEEALFLATRLV-VLSPGPGRVVERLPL 219
|
Length = 259 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (157), Expect = 9e-11
Identities = 59/269 (21%), Positives = 116/269 (43%), Gaps = 24/269 (8%)
Query: 1208 NLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPL---------VTEECRPPSNWPD 1258
NLN L A I++ NK +R + LP + T+ ++
Sbjct: 21 NLNELDAKAIYDEFQKLNKY---QRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNH 77
Query: 1259 VGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMG 1318
N Y VL +++ K +G +G GKST ++ + ++ + G
Sbjct: 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEG 137
Query: 1319 S-------IIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL--DPLVQ-YSDKQV 1368
+ + N KI +LR+R+G++ Q PT F+ ++ N+ P +D+++
Sbjct: 138 TSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKI 197
Query: 1369 WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATAS 1428
E + + L E K D + + G S GQ+Q C+ R + + +L++DE T++
Sbjct: 198 LEKIVEKSLKSAALWDEVKDD--LDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSA 255
Query: 1429 VDSATDGVIQKIISQEFKDRTVVTIAHRI 1457
+D I+++I + K +++ + H +
Sbjct: 256 LDPIATAKIEELILELKKKYSIIIVTHSM 284
|
Length = 329 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 9e-11
Identities = 65/248 (26%), Positives = 111/248 (44%), Gaps = 36/248 (14%)
Query: 1266 NLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNV 1325
+L RY EH VLK +S + ++G +GSGKST ++ I + +P+ GSI+++
Sbjct: 10 DLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQ 67
Query: 1326 DIT-------------KIGLHDLRSRLGIIPQDPTLFDG-TVRGN-LDPLVQYSDKQVWE 1370
I K L LR+RL ++ Q L+ TV N ++ +Q E
Sbjct: 68 TINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQE 127
Query: 1371 A-------LDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLD 1423
A L K + + + K + S GQ+Q + R L + +L+ D
Sbjct: 128 ARERAVKYLAKVGIDERAQGKYPV----------HLSGGQQQRVSIARALAMEPEVLLFD 177
Query: 1424 EATASVDSATDGVIQKIISQEFKD-RTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPT 1481
E T+++D G + +I+ Q ++ +T+V + H + S V+ L G+I E +P
Sbjct: 178 EPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPE 237
Query: 1482 KLLEREDS 1489
+L S
Sbjct: 238 QLFGNPQS 245
|
Length = 257 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 1e-10
Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 42/199 (21%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCI-----LGEIQKMAGTVKISGTKAY----- 699
L+ I L + A+ G G GKS+ L C+ L K+ G V + G Y
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 700 ----------VPQSPWILTGNIRENILFGNQY----DSCKYDRTVE----ACAL---VKD 738
V Q P +I +N+ +G + D + D+ VE AL VKD
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD 139
Query: 739 FELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKD 798
++ + + +SGGQ+QR+ IAR + D+ L+D+P SA+D T +D
Sbjct: 140 ----------DLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP-ISTLKIED 188
Query: 799 CLMGILKDKSVLYVTHQVE 817
++ + K+ +++ VTH ++
Sbjct: 189 LMVELKKEYTIVIVTHNMQ 207
|
Length = 251 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 54/253 (21%)
Query: 1225 NKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISC 1284
+ +L NL E + NL + Y + L +IS
Sbjct: 5 GITLMALPLLDVLNLSDEQT----------------ALEVRNLNLFYGDK--QALFDISM 46
Query: 1285 TFPGRKKVGVVGRTGSGKSTLIQAIFRI--------VEPTMGSIIIDNVDIT--KIGLHD 1334
P + +G +G GKSTL++ R+ +E G I +D +I K+ + +
Sbjct: 47 RIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIE---GEIRLDGQNIYDKKVDVAE 103
Query: 1335 LRSRLGIIPQDPTLFDGTVRGNLDPLVQYS------------DKQVWEALDKCQLGDLVR 1382
LR R+G++ Q P F ++ N V Y D+ V +L L D V+
Sbjct: 104 LRRRVGMVFQRPNPFPKSIYEN----VVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK 159
Query: 1383 AKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIIS 1442
++L EN S GQ+Q + R + + +L+LDE T+++D + I+++I+
Sbjct: 160 ---DRLH----ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELIT 212
Query: 1443 QEFKDRTVVTIAH 1455
+ T+V + H
Sbjct: 213 ELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 51/207 (24%), Positives = 93/207 (44%), Gaps = 28/207 (13%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG-----TKAYVPQSP 704
+DG+ VK G + G G+GK++ L + G ++ AG + G A +
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80
Query: 705 WILTGN--------IRENILFGNQYDSCKYDRTVEACALVKD-FELFASGDLTEIGERGI 755
++ + REN+ + K D E A +++ + +L + R
Sbjct: 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGD---ELTARLEELADRLGMEELLD--RRVG 135
Query: 756 NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--KSVLYVT 813
S G +Q++ IARA+ D + LLD+P + +D T+ ++ + L+ K +L+ T
Sbjct: 136 GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDV-MATRALREFIRQ-LRALGKCILFST 193
Query: 814 H---QVEFLPAADIILVMENGRIAQAG 837
H +VE L D ++V+ GR+ G
Sbjct: 194 HIMQEVERL--CDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 16/205 (7%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
+ +S T + G++G G+GK+T ++ + ++EP G +D D+ K + R
Sbjct: 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPA-EARR 78
Query: 1338 RLGIIPQDPTLFDG-TVRGNLD---PLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVA 1393
RLG + L+D T R NL+ L ++ L++ L D + +E +
Sbjct: 79 RLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEE--LADRLGMEE-----LLD 131
Query: 1394 ENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKD--RTVV 1451
+S G RQ + R L+ +L+LDE T +D +++ I ++ + + ++
Sbjct: 132 RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFI-RQLRALGKCIL 190
Query: 1452 TIAHRIHTVID-SDLVLVLSDGRIA 1475
H + V D V+VL GR+
Sbjct: 191 FSTHIMQEVERLCDRVVVLHRGRVV 215
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 54/210 (25%), Positives = 87/210 (41%), Gaps = 50/210 (23%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAI--FRIVEPTMGSIIIDNVDITKIGLHDL 1335
+LK ++ T + ++G GSGKSTL + I E T G I+ DIT + +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEE- 73
Query: 1336 RSRLGII--PQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVA 1393
R+RLGI Q P G V+ D +R
Sbjct: 74 RARLGIFLAFQYPPEIPG-VK----------------------NADFLR----------- 99
Query: 1394 ENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-----KDR 1448
E +S G+++ + + LL + + +LDE DS D +++++ + +
Sbjct: 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDE----PDSGLDIDALRLVAEVINKLREEGK 155
Query: 1449 TVVTIAH--RIHTVIDSDLVLVLSDGRIAE 1476
+V+ I H R+ I D V VL DGRI +
Sbjct: 156 SVLIITHYQRLLDYIKPDRVHVLYDGRIVK 185
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 46/234 (19%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ L RY L ++S T + V ++G G+GKSTL + R+ G I
Sbjct: 2 LEVAGLSFRYGAR--RALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI- 58
Query: 1322 IDNVDITKIGLHDLRS-------RLGIIPQDPTL-FDGTVRGNLDPLVQY---------- 1363
+ HDLR RLG++ Q PTL D +VR NL +Y
Sbjct: 59 -------SVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNL----RYHAALHGLSRA 107
Query: 1364 -SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVL 1422
+ ++ E L + L + K +L NG G R+ + R LL + ++L+L
Sbjct: 108 EARARIAELLARLGLAERADDKVREL------NG-----GHRRRVEIARALLHRPALLLL 156
Query: 1423 DEATASVDSATDGVIQKIISQEFKDR--TVVTIAHRIHTVIDSDLVLVLSDGRI 1474
DE T +D A+ I + +D+ +V+ H + + D ++VL GR+
Sbjct: 157 DEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRV 210
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 27/230 (11%)
Query: 633 EVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVK 692
EV F + LD + V+ G VA+ G G+GKS+L S + G +
Sbjct: 3 EVAGLSFRYGA---RRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQIS 59
Query: 693 ISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVE--------------ACALVKD 738
++G L R ++F Q + D +V A A +
Sbjct: 60 VAGH-DLRRAPRAALA---RLGVVF--QQPTLDLDLSVRQNLRYHAALHGLSRAEARARI 113
Query: 739 FELFASGDLTE-IGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFK 797
EL A L E ++ ++GG ++R++IARA+ + LLD+P +D + +
Sbjct: 114 AELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITA 173
Query: 798 DCLMGILKDK--SVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845
+ + +D+ SVL+ TH V+ + A D ++V+ GR+ G EL
Sbjct: 174 H-VRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 51/215 (23%), Positives = 91/215 (42%), Gaps = 7/215 (3%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
++ + T P G++G GSGKSTL++ + + P G++ + VD+ +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 1338 RLGIIPQD-PTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRA--KEEKLDSTVAE 1394
R+ ++ QD T TVR ++ L + + +W A D +V +L
Sbjct: 76 RVALVEQDSDTAVPLTVR-DVVALGRIPHRSLW-AGDSPHDAAVVDRALARTELSHLADR 133
Query: 1395 NGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIA 1454
+ S G+RQ + R L ++ +L+LDE T +D ++ + V A
Sbjct: 134 DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAA 193
Query: 1455 -HRI-HTVIDSDLVLVLSDGRIAEYDSPTKLLERE 1487
H + D V+VL GR+ P ++L
Sbjct: 194 LHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPA 228
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 29/218 (13%)
Query: 653 IQLKVKRGMKVAICGTVGSGKSSLLSCIL---GEIQ--KMAGTVKISGTKAYVP------ 701
+ +K+ + AI G G GK++LL I I ++ G + G Y P
Sbjct: 22 VTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81
Query: 702 ---------QSPWILTGNIRENILFGNQY----DSCKYDRTVEACALVKDFELFASGDLT 748
Q P +I +N+ FG + K DR VE +K L+ +
Sbjct: 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEES--LKKAALWDEVK-S 138
Query: 749 EIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKS 808
E+ + G +SGGQ+QR+ IARA+ + ++ LLD+P SA+D TQ + L + ++ +
Sbjct: 139 ELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP-IATQRIEKLLEELSENYT 197
Query: 809 VLYVTHQV-EFLPAADIILVMENGRIAQAGRFEELLKQ 845
++ VTH + + + AD I M G + + G E++++
Sbjct: 198 IVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235
|
Length = 250 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 27/191 (14%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCI-----LGEIQKMAGTVKISGTKAY----- 699
L I L + A+ G G GKS+LL C+ L E K+ G + + G Y
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 700 ---------VPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEI 750
V Q P +I EN+ +G + K + ++ V + L + E+
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDE---VVERSLRGAALWDEV 135
Query: 751 GER----GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD 806
+R +SGGQ+QR+ IAR + + D+ L+D+P SA+D T ++ + + K+
Sbjct: 136 KDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDP-IATHKIEELMEELKKN 194
Query: 807 KSVLYVTHQVE 817
+++ VTH ++
Sbjct: 195 YTIVIVTHSMQ 205
|
Length = 249 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 49/212 (23%), Positives = 87/212 (41%), Gaps = 29/212 (13%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYV--PQSPW 705
P L + L ++ G V + G G GKS+L +LG + GTV G Y +
Sbjct: 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRR 84
Query: 706 ILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINM-------- 757
+++ ++F + + TV + + S D +E R +
Sbjct: 85 AFRRDVQ--LVFQDSPSAVNPRMTVRQ-IIGEPLRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 758 ----------SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK 807
SGGQ QRI IARA+ + +LD+ S +D + + L+ L+
Sbjct: 142 EDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE--LLRKLQQA 199
Query: 808 ---SVLYVTHQVEFLPA-ADIILVMENGRIAQ 835
+ L++TH + + + + VM+ G+I +
Sbjct: 200 FGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 36/197 (18%)
Query: 649 TLDGIQLKVKRGMKVAICGTVGSGKSSLLSCI--LGEIQ---KMAGTVKISGTKAYVP-- 701
L+ + L A+ G GSGKS+LL I + ++ + G++ +G Y P
Sbjct: 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79
Query: 702 -------------QSPWILTGNIRENILFG----NQYDSCKYDRTVEACALVKDFELFAS 744
Q P +I EN+++G D D VE L +
Sbjct: 80 DTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEK-------SLKGA 132
Query: 745 GDLTEIGER----GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCL 800
E+ +R + +SGGQ+QR+ IAR + I LLD+P SA+D + ++ ++ L
Sbjct: 133 SIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI-EETL 191
Query: 801 MGILKDKSVLYVTHQVE 817
+G+ D ++L VT ++
Sbjct: 192 LGLKDDYTMLLVTRSMQ 208
|
Length = 252 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-10
Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 23/174 (13%)
Query: 656 KVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAG---TVKISGTKAYVPQSPWILTGNIR 712
+V G + ICG G GKSSL ILGE+ + G T G YVPQ P++ G +R
Sbjct: 474 EVPSGNNLLICGPNGCGKSSLFR-ILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLR 532
Query: 713 ENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGIN----------MSGGQK 762
+ I++ + + K R + L + + LT I ER +SGG+K
Sbjct: 533 DQIIYPDSSEDMK-RRGLSDKDLEQILDNV---QLTHILEREGGWSAVQDWMDVLSGGEK 588
Query: 763 QRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCL-MGILKDKSVLYVTHQ 815
QRI +AR Y +LD+ SAV +++ C GI ++ V+H+
Sbjct: 589 QRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGI----TLFSVSHR 638
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 24/189 (12%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCI-----LGEIQKMAGTVKISGTKAYVP--- 701
L GI L + A+ G G GKS+ L + L + G V + G Y P
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 702 ------------QSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTE 749
Q P +I EN+++G + K D+ V A+ + A D +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVK-DKAVLDEAVETSLKQAAIWDEVK 139
Query: 750 --IGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK 807
+ E +++SGGQ+QR+ IAR + D+ LLD+P SA+D + TQ+ ++ L+ +
Sbjct: 140 DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQI-ENMLLELRDQY 198
Query: 808 SVLYVTHQV 816
+++ VTH +
Sbjct: 199 TIILVTHSM 207
|
Length = 252 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 54/233 (23%), Positives = 108/233 (46%), Gaps = 18/233 (7%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PT 1316
I+ ++ + Y + LK I F + ++G +G GKST ++ + R+ +
Sbjct: 6 ITSSDVHLFYGKF--EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTI 63
Query: 1317 MGSIIIDNVDI--TKIGLHDLRSRLGIIPQDPTLFDGTVRGNLD---PLVQYSDKQVWEA 1371
G++ + +I + LR ++G++ Q P F ++ N+ L DK V
Sbjct: 64 TGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAV--- 120
Query: 1372 LDKCQLGDLVRAKE-EKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD 1430
LD+ L +A +++ + E+ + S GQ+Q C+ R L K +++LDE T+++D
Sbjct: 121 LDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
Query: 1431 SATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTK 1482
+ I+ ++ + T++ + H +H SD G + E+ + TK
Sbjct: 181 PISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEF-ADTK 232
|
Length = 252 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 33/230 (14%)
Query: 1273 EHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGL 1332
+ + +V K +S T + + ++G GSGKSTL + + ++EPT G ++ID+ + G
Sbjct: 24 QTVEAV-KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLH-FGD 81
Query: 1333 HDLRS-RLGIIPQDPT-----------LFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDL 1380
+ RS R+ +I QDP+ + D +R N D + +KQ+ E L + L
Sbjct: 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGL--- 138
Query: 1381 VRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD-SATDGVIQK 1439
L + + GQ+Q L R L+ + +++ DEA AS+D S +I
Sbjct: 139 -------LPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINL 191
Query: 1440 IIS-QEFKDRTVVTIAHRI----HTVIDSDLVLVLSDGRIAEYDSPTKLL 1484
++ QE + + + + + H SD VLV+ G + E S +L
Sbjct: 192 MLELQEKQGISYIYVTQHLGMMKHI---SDQVLVMHQGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 68/247 (27%), Positives = 116/247 (46%), Gaps = 31/247 (12%)
Query: 1262 ISFHNLQIRYAEHLP---SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMG 1318
I+F ++ RY P L +++ + P V ++G TGSGKSTL+Q + +++PT G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 1319 SIIIDNVDIT----KIGLHDLRSRLGIIPQDP--TLFDGTVRGNL--DPL-VQYSDKQVW 1369
++ I IT L LR ++GI+ Q P LF+ TV ++ P+ S++
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEE--- 119
Query: 1370 EALDKC-QLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATAS 1428
+A K ++ +LV EE L + E S GQ + + L + +LVLDE TA
Sbjct: 120 DAKQKAREMIELVGLPEELLARSPFE----LSGGQMRRVAIAGVLAMEPEVLVLDEPTAG 175
Query: 1429 VDSATDGVIQKIISQEF------KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPT 1481
+D +K + + F K T V + H + +D ++V+ G + +P
Sbjct: 176 LDPKG----RKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231
Query: 1482 KLLERED 1488
++ D
Sbjct: 232 EIFADPD 238
|
Length = 290 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 64/251 (25%), Positives = 106/251 (42%), Gaps = 40/251 (15%)
Query: 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSI 1320
+I N+ R+ + L ++S P + V ++G +GSGK+TL++ I + P G+I
Sbjct: 2 SIEVRNVSKRFGDF--VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59
Query: 1321 IIDNVDITKIGLHDLRSR-LGIIPQDPTLFDG-TVRGNL-----------DPLVQYSDKQ 1367
+ D T ++ R +G + Q LF TV N+ P +
Sbjct: 60 LFGGEDATD---VPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAK 116
Query: 1368 VWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATA 1427
V E L QL L +L S GQRQ L R L + +L+LDE
Sbjct: 117 VHELLKLVQLDWLADRYPAQL-----------SGGQRQRVALARALAVEPKVLLLDEPFG 165
Query: 1428 SVDSATDGVIQKIIS---QEFKDRTVVT---IAHRIHTVID-SDLVLVLSDGRIAEYDSP 1480
A D ++K + + D VT + H ++ +D V+V++ GRI + +P
Sbjct: 166 ----ALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTP 221
Query: 1481 TKLLEREDSFF 1491
++ + S F
Sbjct: 222 DEVYDHPASPF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 52/199 (26%), Positives = 96/199 (48%), Gaps = 30/199 (15%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKM-AGTVKISGTKAYVPQSPWILT 708
LD + L +++G AI G GSGKS+LL+ I+G ++K +G V ++G + S
Sbjct: 14 LDDLNLTIEKGKMYAIIGESGSGKSTLLN-IIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 709 GNIRENI--LFGN----QYDSCKYDRTVEACALVKDFELFASGDLTEIGER-GIN----- 756
RE + LF N + ++ + + + K + E E+ G+N
Sbjct: 73 -FRREKLGYLFQNFALIENETVEENLDL-GLKYKKLSKKEKREKKKEALEKVGLNLKLKQ 130
Query: 757 ----MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD-----K 807
+SGG++QR+ +ARA+ + + L D+P ++D +D ++ +L + K
Sbjct: 131 KIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKN-----RDEVLDLLLELNDEGK 185
Query: 808 SVLYVTHQVEFLPAADIIL 826
+++ VTH E AD ++
Sbjct: 186 TIIIVTHDPEVAKQADRVI 204
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 3e-10
Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 42/199 (21%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCI-----LGEIQKMAGTVKISGTKAYVP--- 701
L I L+ ++ A+ G G GKS+ L C+ L ++ G + + G Y P
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 702 ------------QSPWILTGNIRENILFG--------NQYDSCKYDRTVEACAL---VKD 738
Q P +I EN+ +G Y + + +R++ AL VKD
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD 141
Query: 739 FELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKD 798
+ E + +SGGQ+QR+ IARA+ + ++ L+D+P SA+D TQ ++
Sbjct: 142 ----------RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP-IATQKIEE 190
Query: 799 CLMGILKDKSVLYVTHQVE 817
+ + +++ VTH ++
Sbjct: 191 LIHELKARYTIIIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 3e-10
Identities = 59/211 (27%), Positives = 101/211 (47%), Gaps = 22/211 (10%)
Query: 1279 LKNISCTF-PGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIID-NVDITKIGLHDLR 1336
L ++S + PG +V ++G G+GK+TL+ I P G ++ D + D+TK+ H
Sbjct: 21 LNDLSFSVDPGELRV-LIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR-I 78
Query: 1337 SRLGIIP--QDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVA 1393
+R GI Q PT+F+ TVR NL+ L DK V+ +L L + ++D +A
Sbjct: 79 ARAGIGRKFQKPTVFENLTVRENLE-LALNRDKSVFASL----FARLRAEERRRIDELLA 133
Query: 1394 ENG---------ENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQE 1444
G S GQ+Q +G L + +L+LDE A + A +++
Sbjct: 134 TIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSL 193
Query: 1445 FKDRTVVTIAHRIHTVID-SDLVLVLSDGRI 1474
+++ + H + V + +D V VL +G +
Sbjct: 194 AGKHSILVVEHDMGFVREIADKVTVLHEGSV 224
|
Length = 249 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 32/217 (14%)
Query: 646 SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCI-LGEIQKMAGTVKISGTKAYVPQSP 704
+ L I L +G + + G G+GKSSLL + L E+ + +GT+ I+G ++P
Sbjct: 14 AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGNHFDFSKTP 72
Query: 705 WILTG-NIRENI--LFGNQYD--------------SCKYDRTVEACALVKDFELFASGDL 747
+R N+ +F QY+ C+ + AL + +L L
Sbjct: 73 SDKAIRELRRNVGMVF-QQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRL 131
Query: 748 TEIGER-GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD 806
+R +++SGGQ+QR+ IARA+ + + L D+P +A+D Q+ I+++
Sbjct: 132 KPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS-----IIRE 186
Query: 807 KS-----VLYVTHQVEFL-PAADIILVMENGRIAQAG 837
+ + VTH+VE A ++ MENG I + G
Sbjct: 187 LAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 3e-10
Identities = 58/246 (23%), Positives = 110/246 (44%), Gaps = 31/246 (12%)
Query: 1258 DVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTM 1317
+ I NL + Y + L NI+ ++G +G GKST ++ + R+ +
Sbjct: 4 NEAIIETENLNLFYTDF--KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVE 61
Query: 1318 G------------SIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSD 1365
G +I +N DI +LR ++G++ Q P F ++ N + Y
Sbjct: 62 GIKIEGNVIYEGKNIYSNNFDIL-----ELRRKIGMVFQTPNPFLMSIYDN----ISYGP 112
Query: 1366 KQVWEALDKCQLGDLVRAKEEK------LDSTVAENGENWSVGQRQLFCLGRTLLKKSSI 1419
K + DK +L ++V +K + + N + S GQ+Q C+ RTL + ++
Sbjct: 113 K-IHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNV 171
Query: 1420 LVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYD 1478
+++DE T+++D + G I+++I + T++ + H + SD +G I E
Sbjct: 172 ILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEES 231
Query: 1479 SPTKLL 1484
S +L
Sbjct: 232 STDELF 237
|
Length = 254 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 47/212 (22%), Positives = 93/212 (43%), Gaps = 40/212 (18%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKA----------- 698
LDG+ L + GM + G G+GK++L+ + +GT++I G
Sbjct: 16 LDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRI 74
Query: 699 -YVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDF----------ELFASGDL 747
Y+PQ Y + ++ A +K E+ +L
Sbjct: 75 GYLPQEF--------------GVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNL 120
Query: 748 TEIGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD 806
+ ++ I +SGG ++R+ IA+A+ D I ++D+P + +D + F++ L + +D
Sbjct: 121 GDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIR-FRNLLSELGED 179
Query: 807 KSVLYVTHQVEFLPA-ADIILVMENGRIAQAG 837
+ V+ TH VE + + + + V+ G++ G
Sbjct: 180 RIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 4e-10
Identities = 56/242 (23%), Positives = 104/242 (42%), Gaps = 37/242 (15%)
Query: 632 VEVVNGKFSWNPES--SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAG 689
+++ N + + LD + ++++ G V + G GSGKS+L+ + G ++ +G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 690 TVKISGTK---------------AYVPQSP--WILTGNIRENILFG----NQYDSCKYDR 728
+ I G V Q P + I ++I FG + +R
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR 122
Query: 729 TVEACALVK-DFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAV 787
A +V D+E + E+ SGGQK+R+ IA V + I +LD+P + +
Sbjct: 123 VKRAMNIVGLDYEDYKDKSPFEL-------SGGQKRRVAIAGVVAMEPKILILDEPTAGL 175
Query: 788 DAHTGTQLFKDCLMGILKDK---SVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELL 843
D ++ + L + +++ V+H +E + AD I+VM G+ G E+
Sbjct: 176 DPKGRDEILN--KIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233
Query: 844 KQ 845
K+
Sbjct: 234 KE 235
|
Length = 287 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 4e-10
Identities = 47/207 (22%), Positives = 94/207 (45%), Gaps = 25/207 (12%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
LK++S P +++G++GR G+GKSTL++ + I P G++ + + +GL
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLG---- 92
Query: 1338 RLGIIPQ----DPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVA 1393
G P+ + +G + G + D+++ E ++ +LGD +D V
Sbjct: 93 -GGFNPELTGRENIYLNGRLLGLSR---KEIDEKIDEIIEFSELGD-------FIDLPV- 140
Query: 1394 ENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT-DGVIQKIISQEFKDRTVVT 1452
+ +S G + + IL++DE A D+A + +++ + +TV+
Sbjct: 141 ---KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVIL 197
Query: 1453 IAHRIHTVID-SDLVLVLSDGRIAEYD 1478
++H ++ D LVL G+I
Sbjct: 198 VSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 42/196 (21%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCI-----LGEIQKMAGTVKISGTKAY----- 699
L I L ++ A+ G G GKS+ L + L K+ G V + G Y
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 700 ----------VPQSPWILTGNIRENILFG----NQYDSCKYDRTVE----ACAL---VKD 738
V Q P +I +N+ +G D K D VE AL VKD
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD 138
Query: 739 FELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKD 798
+ + + +SGGQ+QR+ IARA+ + ++ L+D+P SA+D T ++
Sbjct: 139 ----------RLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDP-ISTLKIEE 187
Query: 799 CLMGILKDKSVLYVTH 814
+ + KD +++ VTH
Sbjct: 188 LIQELKKDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 5e-10
Identities = 62/253 (24%), Positives = 109/253 (43%), Gaps = 37/253 (14%)
Query: 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSI 1320
+ +L RY EH VLK +S + ++G +GSGKST ++ I + +P+ GSI
Sbjct: 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI 63
Query: 1321 IIDNVDI-TKIG------------LHDLRSRLGIIPQD------PTLFDGTVRGNLDPLV 1361
++ +I K L LR+RLG++ Q T+ + + + L
Sbjct: 64 RVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLG 123
Query: 1362 QYSDKQVWEA---LDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSS 1418
+ + A L K + + A L S GQ+Q + R L +
Sbjct: 124 VSKAEAIERAEKYLAKVGIAEKADAYPAHL-----------SGGQQQRVAIARALAMEPE 172
Query: 1419 ILVLDEATASVDSATDGVIQKIISQEFKD-RTVVTIAHRIHTVID-SDLVLVLSDGRIAE 1476
+++ DE T+++D G + K++ ++ RT+V + H + D S V+ L G+I E
Sbjct: 173 VMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232
Query: 1477 YDSPTKLLEREDS 1489
P ++ S
Sbjct: 233 EGPPEQVFGNPQS 245
|
Length = 256 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 6e-10
Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 24/239 (10%)
Query: 1259 VGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMG 1318
V I F N++ RY + L V+ +S + G++G G+GK+T ++ + + P G
Sbjct: 5 VAPIDFRNVEKRYGDKL--VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAG 62
Query: 1319 SIIIDNVDITKIGLHDLRSRLGIIPQ----DPTLFDGTVRGNLDPLVQY---SDKQVWEA 1371
SI + + H R R+G++PQ DP D TVR NL +Y S
Sbjct: 63 SISLCGEPVPSRARH-ARQRVGVVPQFDNLDP---DFTVRENLLVFGRYFGLSAAAARAL 118
Query: 1372 LDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDS 1431
+ L + + E K D+ V E S G ++ L R L+ +LVLDE T +D
Sbjct: 119 VPP--LLEFAKL-ENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDP 171
Query: 1432 ATDGVI-QKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGR-IAEYDSPTKLLERE 1487
++ +++ S + +T++ H + D + V+ +GR IAE +P L+E E
Sbjct: 172 QARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAE-GAPHALIESE 229
|
Length = 306 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 6e-10
Identities = 65/209 (31%), Positives = 104/209 (49%), Gaps = 26/209 (12%)
Query: 1278 VLKNISCT-FPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLR 1336
VLK I T G ++G G+GKSTL++ I IV P G++ I ++
Sbjct: 26 VLKGIDFTLHAGEVH-ALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLT-PAKA 83
Query: 1337 SRLGI--IPQDPTLFDG-TVRGNLD---PLVQYSDKQVWEALDK--CQLGDLVRAKEEKL 1388
+LGI +PQ+P LF +V+ N+ P Q S +++ + L CQL L
Sbjct: 84 HQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQL---------DL 134
Query: 1389 DSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSA-TDGVIQKIISQEFKD 1447
DS+ + V RQ+ + R L++ S IL+LDE TAS+ A T+ + +I +
Sbjct: 135 DSSAG----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQG 190
Query: 1448 RTVVTIAHRIHTVID-SDLVLVLSDGRIA 1475
+V I+H++ + +D + V+ DG IA
Sbjct: 191 VGIVFISHKLPEIRQLADRISVMRDGTIA 219
|
Length = 510 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 6e-10
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 44/196 (22%)
Query: 653 IQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAY------------- 699
+ LK+ +A G G GKS+LL C + + K+ G Y
Sbjct: 39 VHLKIPAKKIIAFIGPSGCGKSTLLRC-FNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97
Query: 700 --------VPQSPWILTGNIRENILFGNQYDSCK--YDRTVE----ACAL---VKDFELF 742
V Q P +I ENI F + + K D VE A+ VKD
Sbjct: 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD---- 153
Query: 743 ASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMG 802
++ E+G +SGGQ+QR+ IARA+ D+ L+D+P SA+D + Q+ + CL
Sbjct: 154 ------KLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE- 206
Query: 803 ILKDK-SVLYVTHQVE 817
LK++ +++ VTH ++
Sbjct: 207 -LKEQYTIIMVTHNMQ 221
|
Length = 274 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 6e-10
Identities = 61/239 (25%), Positives = 110/239 (46%), Gaps = 32/239 (13%)
Query: 1266 NLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN- 1324
+L RY + VLK ++ F G+VG G GKSTL + ++ P G+++
Sbjct: 6 DLWFRYQDE--PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK 63
Query: 1325 -VDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLG----D 1379
+D +K GL LR ++ + QDP + + Y+D A LG +
Sbjct: 64 PLDYSKRGLLALRQQVATVFQDP-----------EQQIFYTDIDSDIAFSLRNLGVPEAE 112
Query: 1380 LVRAKEEKLDSTVAENGENWSV-----GQRQLFCLGRTLLKKSSILVLDEATASVDSATD 1434
+ R +E L A++ + + GQ++ + L+ ++ L+LDE TA +D A
Sbjct: 113 ITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172
Query: 1435 ----GVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERED 1488
+I++I++Q V+ +H I + + SD V VL G+I + +P ++ +
Sbjct: 173 TQMIAIIRRIVAQ---GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTE 228
|
Length = 271 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 6e-10
Identities = 53/233 (22%), Positives = 102/233 (43%), Gaps = 25/233 (10%)
Query: 1251 RPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIF 1310
+ +W T+ N+ Y ++ SV I+ T + + ++G GSGKSTL +
Sbjct: 315 QAFPDWQ---TLELRNVTFAYQDNGFSV-GPINLTIKRGELLFLIGGNGSGKSTLAMLLT 370
Query: 1311 RIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWE 1370
+ +P G I++D +T D R + D LFD L P + ++ + E
Sbjct: 371 GLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQL----LGPEGKPANPALVE 426
Query: 1371 A-LDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASV 1429
L++ ++ + ++ ++ + S GQ++ L L ++ IL+LDE A
Sbjct: 427 KWLERLKMAHKLELEDGRISNL------KLSKGQKKRLALLLALAEERDILLLDEWAAD- 479
Query: 1430 DSATDGVIQKIISQEF------KDRTVVTIAHRIHTVIDSDLVLVLSDGRIAE 1476
D ++ Q +T+ I+H H I +D +L + +G+++E
Sbjct: 480 ---QDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 6e-10
Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 33/214 (15%)
Query: 644 ESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------ 697
E L G++L VKRG VAI G GSGKS+LL+ + G +G V++ G
Sbjct: 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDE 79
Query: 698 -----------AYVPQSPWIL-TGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASG 745
+V QS ++ EN+ + + + ++ A K L A G
Sbjct: 80 DARAALRARHVGFVFQSFHLIPNLTALENVALPLELRG---ESSADSRAGAKA-LLEAVG 135
Query: 746 DLTEIGER----GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLM 801
+G+R +SGG++QR+ +ARA D+ D+P +D TG ++ D L
Sbjct: 136 ----LGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKI-ADLLF 190
Query: 802 GILKDK--SVLYVTHQVEFLPAADIILVMENGRI 833
+ +++ +++ VTH + D L + +GR+
Sbjct: 191 ALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 7e-10
Identities = 60/233 (25%), Positives = 102/233 (43%), Gaps = 50/233 (21%)
Query: 1279 LKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG---LHDL 1335
+ + S + ++G +GSGKSTL++ + R++EPT G I++D DI K+ L +L
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 1336 RSR--------LGIIPQ----DPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRA 1383
R + ++P + F V+G P + +++ EAL+ L
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGV--PKAE-REERALEALELVGLEGYADK 160
Query: 1384 KEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQ 1443
+L S G +Q L R L IL++DEA SA D +I+ +
Sbjct: 161 YPNEL-----------SGGMQQRVGLARALANDPDILLMDEAF----SALDPLIRTEMQD 205
Query: 1444 EFKD------RTVVTIAH------RIHTVIDSDLVLVLSDGRIAEYDSPTKLL 1484
E + +T+V I H RI D + ++ DG I + +P ++L
Sbjct: 206 ELLELQAKLKKTIVFITHDLDEALRI-----GDRIAIMKDGEIVQVGTPEEIL 253
|
Length = 386 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 7e-10
Identities = 58/212 (27%), Positives = 112/212 (52%), Gaps = 29/212 (13%)
Query: 1279 LKNISCT-FPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
LK+++ T +PG ++G G+GKSTL++ + I EPT G+I I+N++ K+ H L +
Sbjct: 21 LKSVNLTVYPGEIHA-LLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD-HKLAA 78
Query: 1338 RLG--IIPQDPTLFDG-TVRGNL------------DPLVQYSDKQVWEALDKCQLGDLVR 1382
+LG II Q+ ++ D TV NL ++ + + +V A+ ++G L
Sbjct: 79 QLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVG-LKV 137
Query: 1383 AKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIIS 1442
+EK+ N S+ +Q+ + +TL+ + ++++DE T+S+ + + I++
Sbjct: 138 DLDEKV--------ANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMN 189
Query: 1443 QEFKD-RTVVTIAHRIHTVID-SDLVLVLSDG 1472
Q K+ +V I+H++ + D V+ DG
Sbjct: 190 QLRKEGTAIVYISHKLAEIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 8e-10
Identities = 59/214 (27%), Positives = 102/214 (47%), Gaps = 43/214 (20%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCIL---------GEI--------------QK 686
LDGI L+V+ G V +CG G+GKS+L+ + GEI +
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 687 MAGTVKISGTKAYVPQSPWILTGNIRENILFGNQY----DSCKYDRTVEAC-ALVKDFEL 741
AG V I VP+ ++ ENI GN+ Y+ L+++ +L
Sbjct: 77 RAGIVIIHQELTLVPEL------SVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQL 130
Query: 742 FASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLM 801
A +G+ G GGQ+Q ++IA+A+ + A + +LD+P S++ T++ D ++
Sbjct: 131 DADNVTRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKE-TEILLD-II 184
Query: 802 GILKDKSV--LYVTHQVEFLPA-ADIILVMENGR 832
LK V +Y++H++ + A D I V+ +G+
Sbjct: 185 RDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 9e-10
Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 43/217 (19%)
Query: 653 IQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWI------ 706
I V RG + G VGSG++ L++C+ G ++ G ++++G K P+SP
Sbjct: 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNG-KDISPRSPLDAVKKGM 340
Query: 707 --LTGNIRENILFGN-----------------------QYDSCKYDRTVEACALVKDFEL 741
+T + R+N F N + RT E + L
Sbjct: 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQR--ELLAL 398
Query: 742 FASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLM 801
I E +SGG +Q++ I++ + ++ + D+P +D +++K +M
Sbjct: 399 KCHSVNQNITE----LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYK--VM 452
Query: 802 GILKD--KSVLYVTHQV-EFLPAADIILVMENGRIAQ 835
L D K +L V+ ++ E + D I V GR+ Q
Sbjct: 453 RQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 9e-10
Identities = 64/219 (29%), Positives = 97/219 (44%), Gaps = 44/219 (20%)
Query: 644 ESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQS 703
E L GI L + G VAI G GSGKS+L++ ILG + K SGT Q
Sbjct: 18 EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMN-ILGCLDKPT-----SGTYRVAGQD 71
Query: 704 PWILTGNI-----RENILFGNQYDSCKY--------DRTVEACA----------LVKDFE 740
L + RE+ F Q +Y + VE A L++ E
Sbjct: 72 VATLDADALAQLRREHFGFIFQ----RYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQE 127
Query: 741 LFASGDLTE-IGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDC 799
L L + + + +SGGQ+QR+ IARA+ + L D+P A+D+H+G +
Sbjct: 128 LLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEE----- 182
Query: 800 LMGILKD-----KSVLYVTHQVEFLPAADIILVMENGRI 833
+M IL +V+ VTH + A+ ++ + +G I
Sbjct: 183 VMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEI 221
|
Length = 648 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (148), Expect = 9e-10
Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 27/235 (11%)
Query: 633 EVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVK 692
E VN + N +S L I L+VK+G A+ G GSGKS+LL + G +Q G V
Sbjct: 5 EKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVT 64
Query: 693 IS--------------------GTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEA 732
+ G P+S + + +++ FG Q + E
Sbjct: 65 VGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ-LFEETVLKDVAFGPQ----NFGIPKEK 119
Query: 733 CALVKDFELFASGDLTEIGERG-INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHT 791
+ +L G E E+ +SGGQ +R+ IA + + ++ +LD+P + +D
Sbjct: 120 AEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179
Query: 792 GTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845
++ + ++V+ VTH ++ + AD + ++E G I G ++ ++
Sbjct: 180 RIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234
|
Length = 288 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 59/229 (25%), Positives = 101/229 (44%), Gaps = 38/229 (16%)
Query: 646 SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCI--LGEIQ---KMAGTVKISGTKAY- 699
S L I L + + A G G GKS+ L C + + K+ G + I G Y
Sbjct: 17 SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYS 76
Query: 700 --------------VPQSPWILTGNIRENILFGNQY-----DSCKYDRTVEACALVKDFE 740
V Q P +I +N+ +G + + K D VE
Sbjct: 77 VDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEK-------S 129
Query: 741 LFASGDLTEIGER----GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLF 796
L + G E+G+R +SGGQ+QR+ IARA+ + L+D+P SA+D T +
Sbjct: 130 LTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP-VATNVI 188
Query: 797 KDCLMGILKDKSVLYVTHQV-EFLPAADIILVMENGRIAQAGRFEELLK 844
++ + + K+ +++ VTH + + +D + ++GRI + +E+ K
Sbjct: 189 ENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237
|
Length = 251 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-09
Identities = 57/216 (26%), Positives = 98/216 (45%), Gaps = 29/216 (13%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709
L+ + L V G + G G+GKS+L+ C+ + +G+V + G + +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 710 NIRENI--------------LFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGER-G 754
R I +FGN + D T + K EL A L + +
Sbjct: 81 --RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP 138
Query: 755 INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD------KS 808
N+SGGQKQR+ IARA+ + + L D+ SA+D T TQ ++ +LK+ +
Sbjct: 139 SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT-TQ----SILELLKEINRRLGLT 193
Query: 809 VLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELL 843
+L +TH+++ + D + V+ NG + + G E+
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-09
Identities = 61/223 (27%), Positives = 97/223 (43%), Gaps = 39/223 (17%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------KAYVP- 701
+DGI L ++RG + + G GSGKS+L +L + G ++ G K P
Sbjct: 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALLR-LIPSQGEIRFDGQDIDGLSRKEMRPL 361
Query: 702 --------Q------SPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDL 747
Q SP + G I E L ++ +R +++ L D
Sbjct: 362 RRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGL----DP 417
Query: 748 TEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQ---LFKDCLMGIL 804
SGGQ+QRI IARA+ ++ LLD+P SA+D Q L +D L
Sbjct: 418 ATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRD-----L 472
Query: 805 KDK---SVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELL 843
+ K S L+++H + + A ++VM +G+I + G E +
Sbjct: 473 QQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVF 515
|
Length = 534 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 1e-09
Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 35/222 (15%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG-----EIQKMAGTVKISGTKAYVPQSP 704
L GI L + A+ G G GKS+ L C+ E K+ G +K G Y +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 705 WILTGNIRENILFGNQ---------YDSCKYDRTVEACALVKDFELFASGDLTEIGERGI 755
+ +R+ + Q YD+ Y + A VKD EL + + I
Sbjct: 80 LV---ELRKEVGMVFQQPTPFPFSVYDNVAYGLKI---AGVKDKELIDQRVEESLKQAAI 133
Query: 756 -------------NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMG 802
SGGQ+QRI IARA+ + LLD+P SA+D + +++ ++ LM
Sbjct: 134 WKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEI-EETLME 192
Query: 803 ILKDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELL 843
+ + + VTH ++ +D + NG + +AG EE+
Sbjct: 193 LKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234
|
Length = 251 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 24/212 (11%)
Query: 646 SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-------- 697
+ L+ I ++ G I G G GKS+LL + I +GT+ G
Sbjct: 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78
Query: 698 -----AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGE 752
+Y Q+P + + +N++F Q + + D + D E FA D I
Sbjct: 79 YRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPA----IFLDDLERFALPD--TILT 132
Query: 753 RGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK--SV 809
+ I +SGG+KQRI + R + + LLD+ SA+D + + + ++++ +V
Sbjct: 133 KNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNV-NEIIHRYVREQNIAV 191
Query: 810 LYVTH-QVEFLPAADIILVMENGRIAQAGRFE 840
L+VTH + E A +I + + Q R+E
Sbjct: 192 LWVTHDKDEINHADKVITLQPHAGEMQEARYE 223
|
Length = 225 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (147), Expect = 1e-09
Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 25/211 (11%)
Query: 1293 GVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG----LHDLRSRLGIIPQDP-- 1346
++G TGSGKSTL+Q + +++PT G + + ++ ++ + +R ++G++ Q P
Sbjct: 36 ALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPES 95
Query: 1347 TLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENW------- 1399
LF+ TV + V + + +K + + EKL+ V E W
Sbjct: 96 QLFEETVLKD----VAFGPQNFGIPKEKAE-----KIAAEKLE-MVGLADEFWEKSPFEL 145
Query: 1400 SVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKII-SQEFKDRTVVTIAHRIH 1458
S GQ + + L + +LVLDE TA +D + ++ S +TVV + H +
Sbjct: 146 SGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD 205
Query: 1459 TVID-SDLVLVLSDGRIAEYDSPTKLLERED 1488
V D +D V +L G I +P+ + + D
Sbjct: 206 DVADYADYVYLLEKGHIISCGTPSDVFQEVD 236
|
Length = 288 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 1e-09
Identities = 60/255 (23%), Positives = 107/255 (41%), Gaps = 35/255 (13%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
++ + + RG + G G+GKS++ +LG I G + + G
Sbjct: 20 VNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79
Query: 698 AYVPQSPWI-LTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGIN 756
VPQ + +REN+L +Y + +F S +
Sbjct: 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVAL---- 135
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQV 816
+SGG K+R+ +ARA+ D + +LD+P + +D H +++ + + K++L TH
Sbjct: 136 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH-- 193
Query: 817 EFLPAA----DIILVMENGRIAQAGRFEELLKQNIGFEV--LVGAHSQALESVLT----- 865
F+ A D + V+E+GR GR L+ + IG V + G L ++
Sbjct: 194 -FMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVIEIYGGDPDELRELIRPYARR 252
Query: 866 VETSSRT----SQDP 876
+E S T ++DP
Sbjct: 253 IEVSGETLFCYARDP 267
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 74/249 (29%), Positives = 111/249 (44%), Gaps = 46/249 (18%)
Query: 644 ESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSC--ILG----EIQKMAGTVKISGTK 697
+++ P + G+ L ++RG +A+ G GSGKS L+C LG +++ AG V + G
Sbjct: 13 QAAQPLVHGVSLTLQRGRVLALVGGSGSGKS--LTCAAALGILPAGVRQTAGRVLLDG-- 68
Query: 698 AYVPQSPWILTGNIRENILFGNQYDSCKYDRT-----VEACALV----KDFELFASGDLT 748
P +P L G I+ N + T E C + D L A+ L
Sbjct: 69 --KPVAPCALRGRKIATIM-QNPRSAFNPLHTMHTHARETCLALGKPADDATLTAA--LE 123
Query: 749 EIG----ER-----GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDC 799
+G R MSGG QR+ IA A+ +A + D+P + +D ++ D
Sbjct: 124 AVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL-DL 182
Query: 800 LMGILKDKS--VLYVTHQ---VEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEV--- 851
L I++ ++ +L VTH V L AD + VM +GRI + G E L V
Sbjct: 183 LESIVQKRALGMLLVTHDMGVVARL--ADDVAVMSHGRIVEQGDVETLF-NAPKHAVTRS 239
Query: 852 LVGAHSQAL 860
LV AH AL
Sbjct: 240 LVSAH-LAL 247
|
Length = 254 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 1e-09
Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 46/208 (22%)
Query: 1292 VGVVGRTGSGKSTLIQAIFRIVEPT--MGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLF 1349
+ V+G +GSGKSTL+ A+ ++ G+I+ +N TK + R G + QD L
Sbjct: 97 LAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDIL- 151
Query: 1350 DGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRA--KEEKL---DSTVAENG----ENW- 1399
Y V E L C L L ++ K+EK+ +S ++E G EN
Sbjct: 152 -------------YPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTI 198
Query: 1400 ---------SVGQRQLFCLGRTLLKKSSILVLDEATASVDS-ATDGVIQKIISQEFKDRT 1449
S G+R+ + +L S+L+LDE T+ +D+ A ++ + S K +T
Sbjct: 199 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKT 258
Query: 1450 VVTIAH----RIHTVIDSDLVLVLSDGR 1473
+VT H R++ + DS VLVLS+GR
Sbjct: 259 IVTSMHQPSSRVYQMFDS--VLVLSEGR 284
|
Length = 659 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 61/200 (30%), Positives = 100/200 (50%), Gaps = 36/200 (18%)
Query: 1294 VVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHD---LRSRLGIIPQD-PTLF 1349
+ G +G+GKSTL++ I I P+ G I DIT++ + LR ++G+I QD L
Sbjct: 33 LTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92
Query: 1350 DGTVRGNLD-PLV------QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVG 1402
D TV N+ PL+ ++V ALDK L D + +L S G
Sbjct: 93 DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQL-----------SGG 141
Query: 1403 QRQLFCLGRTLLKKSSILVLDEATASVDSA-TDGVIQKIISQEFKDRTVVTIAHRIHTVI 1461
++Q + R ++ K ++L+ DE T ++D A ++G+++ + +EF +R VT+ H
Sbjct: 142 EQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILR--LFEEF-NRVGVTVLMATH--- 195
Query: 1462 DSDL-------VLVLSDGRI 1474
D L +L LSDG +
Sbjct: 196 DIGLISRRSYRMLTLSDGHL 215
|
Length = 222 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 63/240 (26%), Positives = 107/240 (44%), Gaps = 18/240 (7%)
Query: 1262 ISFHNLQIRYAEHLP---SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMG 1318
I+ N+ Y P L +++ T +G TGSGKST++Q + + PT G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 1319 SIIIDNVDITKIG----LHDLRSRLGIIPQDP--TLFDGTVRGNL--DPLVQYSDKQVWE 1370
S+ +D+ IT + +R ++G++ Q P LF+ TV ++ P ++ E
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 1371 ALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD 1430
AL + +L LV E + E S GQ + + L + ILVLDE TA +D
Sbjct: 123 ALAREKLA-LVGISESLFEKNPFE----LSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
Query: 1431 SATDGVIQKIISQEFKD-RTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERED 1488
+ + + + T+V + H + V + +D V VL G++ P + + D
Sbjct: 178 PKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQDVD 237
|
Length = 280 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 46/221 (20%)
Query: 627 RSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCI-----L 681
+ + +VE +N W E + L + +++ + A+ G G GKS+ + C+ L
Sbjct: 10 QPQIKVENLN---LWYGEKQA--LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDL 64
Query: 682 GEIQKMAGTVKISGTKAYVP---------------QSPWILTGNIRENILFG------NQ 720
+ ++ G V I G Y P Q P +I +N+ +G N+
Sbjct: 65 IKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANK 124
Query: 721 YDSCKYDRTVEACALVKDFELFASGDLTEIGER----GINMSGGQKQRIQIARAVYQDAD 776
D D VE L ++ E +R +++SGGQ+QR+ IAR +
Sbjct: 125 KD---LDGVVE-------NALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPK 174
Query: 777 IYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVE 817
I L D+P SA+D T +D +M + KD +++ VTH ++
Sbjct: 175 IILFDEPTSALDP-ISTARIEDLIMNLKKDYTIVIVTHNMQ 214
|
Length = 258 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 36/211 (17%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK---------A 698
LDGI + + G V + G G+GKS+LL I E +GT++++G
Sbjct: 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP 74
Query: 699 YVPQS--------PWILTGNIRENILFGNQYDSCKYDRTVEACALVKD-FELFA-SGDLT 748
Y+ + + N+ EN+ F + E V EL S
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAFALE---VTGVPPREIRKRVPAALELVGLSHKHR 131
Query: 749 EIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD-- 806
+ +SGG++QR+ IARA+ I + D+P +D T + +M +LK
Sbjct: 132 ALPAE---LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWE-----IMNLLKKIN 183
Query: 807 ---KSVLYVTHQVEFLPA-ADIILVMENGRI 833
+V+ TH E + ++ +E G++
Sbjct: 184 KAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 61/238 (25%), Positives = 99/238 (41%), Gaps = 52/238 (21%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
L+ + L + G A+ G G GKS+LL C + +GTV +
Sbjct: 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR 77
Query: 698 -AYVPQSPWILTG-NIRENILFG-----------NQYDSCKYDRTVEACALVKDFELFAS 744
A +PQ G +RE + +G + D+ + ++ +E + A
Sbjct: 78 LALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH----LAD 133
Query: 745 GDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL 804
LT+ +SGGQ+QR +A + QD + LLD+P + +D + +L + LM L
Sbjct: 134 RRLTD-------LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMR--LMREL 184
Query: 805 KD--KSVLYVTHQVEFLPAA----DIILVMENGRIAQAGRFEE-----LLKQNIGFEV 851
K+V+ V H L A D ++V+ NG + G EE LL+ E
Sbjct: 185 NTQGKTVVTVLHD---LNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLLRTVFDVEA 239
|
Length = 255 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 42/199 (21%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCI-----LGEIQKMAGTVKISGTKAY----- 699
L GI ++++ VA G G GKS+ L L ++ G ++I G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 700 ----------VPQSPWILTGNIRENILFG--------NQYDSCKYDRTVEACAL---VKD 738
V Q P +I EN+ +G N + + + T++ AL VKD
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD 138
Query: 739 FELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKD 798
++ E +SGGQ+QR+ IARA+ + L+D+P SA+D T ++
Sbjct: 139 ----------KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDP-ISTAKVEE 187
Query: 799 CLMGILKDKSVLYVTHQVE 817
+ + KD +++ VTH ++
Sbjct: 188 LIHELKKDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-09
Identities = 67/292 (22%), Positives = 119/292 (40%), Gaps = 51/292 (17%)
Query: 598 QGKV------SADRIAAYLQEDEIQRDAVEYVPKGRSE-----FEVEVVNGKFSWNPESS 646
+GKV A+ L E + R+ V V K S EVE + S
Sbjct: 215 RGKVVGTVDPVAETTEEELAELMVGREVVLRVVKPPSTPGEVVLEVEDL----SVKDRRG 270
Query: 647 SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK--------- 697
+ + +V+ G V I G G+G+S L+ I G + +G + ++G
Sbjct: 271 VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRE 330
Query: 698 ------AYVPQSPW----ILTGNIRENILFGNQYDSCKYD------RTVEACA--LVKDF 739
AYVP+ +L ++ EN++ G R + A L+++F
Sbjct: 331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEF 390
Query: 740 ELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDC 799
++ A ++SGG +Q++ +AR + + D+ + P +D G F
Sbjct: 391 DVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDV--GAIEFIHE 444
Query: 800 LMGILKD--KSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQNIG 848
+ L+D K+VL ++ ++ + +D I V+ GRI EE ++ IG
Sbjct: 445 RLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEATREEIG 496
|
Length = 501 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 2e-09
Identities = 52/185 (28%), Positives = 90/185 (48%), Gaps = 23/185 (12%)
Query: 653 IQLKVKRGMKVAICGTVGSGKSSLLSC---ILGEIQKMAGTVKISGTK------------ 697
I +++++ A+ G G GKS+ L C + +I K+ G V+I G
Sbjct: 21 INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80
Query: 698 -AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGER--- 753
V Q P + +I ENI + + ++ E ALV D L G E+ ++
Sbjct: 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEE-ALVVDC-LQKVGLFEEVKDKLKQ 138
Query: 754 -GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYV 812
+ +SGGQ+QR+ IARA+ + LLD+P SA+D + + ++ L + + S++ V
Sbjct: 139 NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP-ISSGVIEELLKELSHNLSMIMV 197
Query: 813 THQVE 817
TH ++
Sbjct: 198 THNMQ 202
|
Length = 246 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 40/197 (20%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCI-----LGEIQKMAGTVKISGTKAYVP--- 701
+ + L + + A G G GKS++L C L ++ G V G Y P
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 702 ------------QSPWILTGNIRENILFGNQYDSCKYD------RTVEACAL---VKDFE 740
Q P +I +NI +G + + K D R++ AL VKD
Sbjct: 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-- 143
Query: 741 LFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCL 800
++ + G+++SGGQ+QR+ IARA+ ++ L+D+P SA+D T ++ +
Sbjct: 144 --------KLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDP-ISTLRIEELM 194
Query: 801 MGILKDKSVLYVTHQVE 817
+ + +++ VTH ++
Sbjct: 195 HELKEQYTIIIVTHNMQ 211
|
Length = 264 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 55/225 (24%), Positives = 97/225 (43%), Gaps = 39/225 (17%)
Query: 646 SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-------- 697
+DG+ + G + G GSGKS+LL + G ++ AGTV ++G
Sbjct: 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRA 72
Query: 698 -----AYVPQ-SPWILTGNIRENILFGN-------QYDSCKYDRTVEACALVKDFELFAS 744
A V Q S + +R+ + G DS V+ + A
Sbjct: 73 RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD 132
Query: 745 GDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL 804
D++ +SGG++QR+ +ARA+ Q+ + LLD+P + +D QL + ++
Sbjct: 133 RDMS-------TLSGGERQRVHVARALAQEPKLLLLDEPTNHLD--VRAQL---ETLALV 180
Query: 805 KDKSVLYVT-----HQVEF-LPAADIILVMENGRIAQAGRFEELL 843
++ + VT H + D ++V++ GR+ AG E+L
Sbjct: 181 RELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 2e-09
Identities = 61/244 (25%), Positives = 108/244 (44%), Gaps = 37/244 (15%)
Query: 1257 PDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRI--VE 1314
P + L Y + LKNI+ ++ ++G +G GKST ++ R+ +
Sbjct: 12 PTQQKSEVNKLNFYYGGYQ--ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLY 69
Query: 1315 PT---MGSIII--DNVDI--TKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYS--- 1364
P G II+ DNV+I ++ ++R R+ ++ Q P F ++ N V Y
Sbjct: 70 PGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFEN----VAYGLRI 125
Query: 1365 ---------DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLK 1415
+++V AL L D V+ + L N S GQ+Q C+ R L
Sbjct: 126 RGVKRRSILEERVENALRNAALWDEVKDRLGDL-------AFNLSGGQQQRLCIARALAT 178
Query: 1416 KSSILVLDEATASVDSATDGVIQKIISQEFKDR-TVVTIAHRIHTVID-SDLVLVLSDGR 1473
IL+ DE T+++D I+++IS + K++ T++ + H + SD + G
Sbjct: 179 DPEILLFDEPTSALDPIATASIEELIS-DLKNKVTILIVTHNMQQAARVSDYTAYMYMGE 237
Query: 1474 IAEY 1477
+ E+
Sbjct: 238 LIEF 241
|
Length = 265 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-09
Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 48/228 (21%)
Query: 1279 LKNISCTFPGRKK-------------VGVVGRTGSGKSTLIQAIFRIVEPT---MGSIII 1322
+KNI+ TF G K V + G G+GKSTL++ + V P G II
Sbjct: 8 MKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMK-VLSGVYPHGTYEGEIIF 66
Query: 1323 DNVDITKIGLHDL-RSRLGIIPQDPTL----------FDG---TVRGNLDPLVQYSDKQV 1368
+ ++ + D R+ + II Q+ L F G T G +D Y Q
Sbjct: 67 EGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQK 126
Query: 1369 WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATAS 1428
+ KLD A N +GQ+QL + + L K++ +L+LDE TAS
Sbjct: 127 L-------------LAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTAS 173
Query: 1429 VDSATDGVIQKIISQEFKDRTV--VTIAHRIHTVID-SDLVLVLSDGR 1473
+ + V+ II ++ K + + I+H+++ V SD + V+ DGR
Sbjct: 174 LTESETAVLLDII-RDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 33/172 (19%), Positives = 69/172 (40%), Gaps = 20/172 (11%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
+ + +S T + + V G G GK+TL++ + ++ P G + + + + R+
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74
Query: 1338 RLGIIPQD---PTLFDGTVRGNLD---PLVQYSDKQVWEALDKCQLGDLVRAKEEKLDST 1391
L + P L + NL + + + + +AL L +L
Sbjct: 75 ILYLGHLPGLKPEL---SALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQL--- 128
Query: 1392 VAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQ 1443
S GQ++ L R L ++ + +LDE T ++D A ++ ++
Sbjct: 129 --------SAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRA 172
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 2e-09
Identities = 57/235 (24%), Positives = 109/235 (46%), Gaps = 38/235 (16%)
Query: 1289 RKKV-GVVGRTGSGKSTLIQAIFRIVE---PTMGSIIID----NVDITKIGLHDLRSRLG 1340
R KV ++G +G GKST I+ + RI E P ++D N+ +I ++ LR ++G
Sbjct: 32 RNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIG 91
Query: 1341 IIPQDPTLFDGTVRGNLDPLVQYS--------DKQVWEALDKCQLGDLVRAKEEKLDSTV 1392
++ Q P F ++ N+ V+ S D+ V AL L V+ K K S +
Sbjct: 92 MVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNK--SAL 149
Query: 1393 AENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVT 1452
+G GQ+Q C+ R L K +L++DE +++D ++++I + T+
Sbjct: 150 GLSG-----GQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAI 204
Query: 1453 IAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMRSQNFNS 1507
+ H + R++++ T ++S Q++ E+ + +Q F++
Sbjct: 205 VTHNMQQA-----------TRVSDF---TAFFSTDESRIGQMV-EFGVTTQIFSN 244
|
Length = 259 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-09
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 51/216 (23%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG-------TKA---- 698
LD I + G A+ G G+GKS+LL + G Q AG++ I G T A
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 699 ----------YVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFEL--FASGD 746
VP+ +T + EN+ G + +V L A
Sbjct: 80 GVAIIYQELHLVPE----MT--VAENLYLG---------QLPHKGGIVNRRLLNYEAREQ 124
Query: 747 LTEIGERGIN-------MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDC 799
L +G I+ +S GQ+Q ++IA+A+ ++A + D+P S++ A QLF+
Sbjct: 125 LEHLGVD-IDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR-- 181
Query: 800 LMGILKD--KSVLYVTHQVEFLPA-ADIILVMENGR 832
++ L+ + +LYV+H++E + A D I V ++GR
Sbjct: 182 VIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGR 217
|
Length = 501 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 49/231 (21%), Positives = 94/231 (40%), Gaps = 35/231 (15%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
+L +S + + ++G G+GKSTL++A+ + P G + ++ V + +L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 1338 RLGIIPQDPTL-FDGTVR------------GNLDPLVQYSDKQVWEALDKCQLGDLVRAK 1384
++PQ+ +L F TV+ G + Q A D +
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATD-------LSGL 128
Query: 1385 EEKLDSTVAENGENWSVGQRQLFCLGRTLLKKS------SILVLDEATASVDSATDGVIQ 1438
+ T+ S G++Q L R L + L LDE T+++D A
Sbjct: 129 AGRDYRTL-------SGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTL 181
Query: 1439 KIISQEFKDR-TVVTIAHRIH-TVIDSDLVLVLSDGRIAEYDSPTKLLERE 1487
++ Q ++ V+ + H ++ +D +++L GR+ SP +L E
Sbjct: 182 RLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDE 232
|
Length = 259 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 46/228 (20%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG------TK------ 697
+ + + ++G AI G GSGKS+L+ I ++ GTV + TK
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 698 -----AYVPQSP--WILTGNIRENILFGNQYDSCKYDRTVEACALVKD--FELFASGDLT 748
V Q P + + I+FG + + ++ VK+ L L
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPK----NFKMNLDE---VKNYAHRL-----LM 130
Query: 749 EIG-ERGI------NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQ---LFKD 798
++G R + MSGGQ ++I I + + DI +LD+P + +D + Q L K
Sbjct: 131 DLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS 190
Query: 799 CLMGILKDKSVLYVTHQV-EFLPAADIILVMENGRIAQAGRFEELLKQ 845
+ ++K+++ V+H + E AD ++VM+ G I +EL K
Sbjct: 191 --LQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236
|
Length = 286 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 3e-09
Identities = 61/217 (28%), Positives = 98/217 (45%), Gaps = 24/217 (11%)
Query: 1277 SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN--VDITKIGLHD 1334
LK I+ + V ++G G+GKSTL I++PT G ++I + K L +
Sbjct: 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE 75
Query: 1335 LRSRLGIIPQDP--TLFDGTVRG-------NLDPLVQYSDKQVWEALDKCQLGDLVRAKE 1385
+R +GI+ Q+P LF TV NL + +K+V EAL +
Sbjct: 76 VRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPP 135
Query: 1386 EKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF 1445
L S GQ++ + L K I+VLDE T+ +D I K++
Sbjct: 136 HHL-----------SGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLN 184
Query: 1446 KD-RTVVTIAHRIHTV-IDSDLVLVLSDGRIAEYDSP 1480
K+ T++ H + V + +D V V+SDG+I + +P
Sbjct: 185 KEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTP 221
|
Length = 275 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-09
Identities = 62/214 (28%), Positives = 99/214 (46%), Gaps = 28/214 (13%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-AYVP--QSP 704
+D + L + +G A+ G G GKS+LL + G Q AG + + G ++VP Q P
Sbjct: 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRP 92
Query: 705 WILT---------GNIRENILFGNQYDSCKY----DRTVEACALVKDFELFASGDLTEIG 751
+ + +NI FG + D R E LV E FA
Sbjct: 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE-FA-------K 144
Query: 752 ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSV-- 809
+ +SGGQ+QR+ +AR++ + + LLD+P A+D ++ + ++ IL+ V
Sbjct: 145 RKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE-VVDILERVGVTC 203
Query: 810 LYVTH-QVEFLPAADIILVMENGRIAQAGRFEEL 842
+ VTH Q E + A I +M G+ Q G EE+
Sbjct: 204 VMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
Length = 377 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 61/212 (28%), Positives = 92/212 (43%), Gaps = 55/212 (25%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQS------ 703
L+ + L + G VA+ G G GKS+LL + G AG + ++GT P +
Sbjct: 28 LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGT---APLAEAREDT 83
Query: 704 ----------PWI---------LTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFAS 744
PW L G R+ L +A A V
Sbjct: 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAAL--------------QALAAV-------- 121
Query: 745 GDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL 804
G E +SGGQKQR+ +ARA+ + LLD+P A+DA T ++ +D + +
Sbjct: 122 GLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEM-QDLIESLW 180
Query: 805 KDK--SVLYVTHQV-EFLPAADIILVMENGRI 833
+ +VL VTH V E + AD +L++E G+I
Sbjct: 181 QQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 4e-09
Identities = 49/200 (24%), Positives = 87/200 (43%), Gaps = 27/200 (13%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPW---- 705
LD I L VK+G G G+GK++ + ILG I+ +G + G
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIG 75
Query: 706 ------ILTGNI--RENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGI-N 756
N+ REN+ + + R E +V L + ++ +
Sbjct: 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVV---------GLKDSAKKKVKG 126
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--KSVLYVTH 814
S G KQR+ IA A+ + D+ +LD+P + +D G + ++ ++ L+D +VL +H
Sbjct: 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDP-DGIKELRELILS-LRDQGITVLISSH 184
Query: 815 QV-EFLPAADIILVMENGRI 833
+ E AD I ++ G++
Sbjct: 185 LLSEIQKVADRIGIINKGKL 204
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 26/226 (11%)
Query: 1277 SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLR 1336
++L +S TFP K G++G GSGKSTL++ + R P+ G I++D +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFA 84
Query: 1337 SRLGIIPQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAEN 1395
++ +PQ +G TVR L + +Y W LG A EK++ ++
Sbjct: 85 RKVAYLPQQLPAAEGMTVR-ELVAIGRYP----WHG----ALGRFGAADREKVEEAISLV 135
Query: 1396 G---------ENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATD----GVIQKIIS 1442
G ++ S G+RQ + + + S L+LDE T+++D A ++ + +S
Sbjct: 136 GLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR-LS 194
Query: 1443 QEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE 1487
QE + TV+ + H I+ D ++ L G + +P +L+ E
Sbjct: 195 QE-RGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGE 239
|
Length = 265 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 4e-09
Identities = 68/290 (23%), Positives = 124/290 (42%), Gaps = 41/290 (14%)
Query: 1252 PPSNWPDVGTISFHNLQIRYAEHLPS---VLKNISCTFPGRKKVGVVGRTGSGKSTLIQA 1308
P+ D + NL + E + L NIS TF K ++G +GSGKSTL+
Sbjct: 12 VPNPLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTH 71
Query: 1309 IFRIVEPTMGSIIIDNVDI---------------TKI-GLHDLRSRLGIIPQDP--TLFD 1350
+++ G+I + ++ I KI +LR R+ ++ Q P LF
Sbjct: 72 FNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK 131
Query: 1351 GTVRGNL--DPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAE-NGENWSVGQRQLF 1407
T+ ++ P+ K + L K L + LD + E + S GQ++
Sbjct: 132 DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKM------GLDDSYLERSPFGLSGGQKRRV 185
Query: 1408 CLGRTLLKKSSILVLDEATASVDSATDG-VIQKIISQEFKDRTVVTIAHRIHTVID-SDL 1465
+ L + IL+ DE TA +D + ++Q I+ + ++TV I H + V++ +D
Sbjct: 186 AIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADE 245
Query: 1466 VLVLSDGRIAEYDSPTKLLEREDSFFS---------QLIKEYSMRSQNFN 1506
V+V+ G+I + +P ++ + S Q+I + + +
Sbjct: 246 VIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPRVIQVINDLIKKDPKYK 295
|
Length = 320 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 5e-09
Identities = 65/256 (25%), Positives = 120/256 (46%), Gaps = 43/256 (16%)
Query: 613 DEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSG 672
+ QR A +Y+ +G S+ ++ G S + +S L ++ G I G GSG
Sbjct: 16 EHPQR-AFKYIEQGLSKEQILEKTG-LSLGVKDAS-------LAIEEGEIFVIMGLSGSG 66
Query: 673 KSSLLSCILGEIQKMAGTVKISGTK-----------------AYVPQSPWILTG-NIREN 714
KS+++ + I+ G V I G A V QS ++ + +N
Sbjct: 67 KSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDN 126
Query: 715 ILFGNQYDSC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARA 770
FG + + ++ ++A V E +A E +SGG +QR+ +ARA
Sbjct: 127 TAFGMELAGINAEERREKALDALRQV-GLENYAHSYPDE-------LSGGMRQRVGLARA 178
Query: 771 VYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQV-EFLPAADIILV 827
+ + DI L+D+ FSA+D T++ +D L+ + +++++++H + E + D I +
Sbjct: 179 LAINPDILLMDEAFSALDPLIRTEM-QDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAI 237
Query: 828 MENGRIAQAGRFEELL 843
M+NG + Q G +E+L
Sbjct: 238 MQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 5e-09
Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 49/216 (22%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSL---LSCIL------GEI--------------QK 686
LD + LKV+ G V++CG G+GKS+L LS + GEI +
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80
Query: 687 MAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCK---YDR-TVEACALVKDFELF 742
AG I A V + L+ + ENI GN+ YD + A L+ +L
Sbjct: 81 RAGIAIIHQELALVKE----LS--VLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD 134
Query: 743 ASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLF---KDC 799
+ T +G G GQ+Q ++IA+A+ + A + +LD+P +++ L +D
Sbjct: 135 INPA-TPVGNLG----LGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRD- 188
Query: 800 LMGILKDKSV--LYVTHQVEFLPA-ADIILVMENGR 832
LK + +Y++H++ + A +D I V+ +GR
Sbjct: 189 ----LKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 6e-09
Identities = 63/267 (23%), Positives = 119/267 (44%), Gaps = 47/267 (17%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ F ++ R+ +VL ++ + +KV ++G +GSGKST+++ + + G I
Sbjct: 1 VRFSDVTKRFGIL--TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58
Query: 1322 IDNVDITKIG-------------LHDLRSRLGIIPQDPTLF-DGTVRGN--LDPLV---- 1361
++ + + L +R+++G++ Q LF TV N P++
Sbjct: 59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGM 118
Query: 1362 --QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSI 1419
++K+ E LD L D K D A+ S GQ+Q + R L + +
Sbjct: 119 ARAEAEKRAMELLDMVGLAD-------KADHMPAQ----LSGGQQQRVAIARALAMRPKV 167
Query: 1420 LVLDEATASVDSATDG----VIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRI 1474
++ DE T+++D G VI+++ S+ D T++ + H + + +D V GRI
Sbjct: 168 MLFDEVTSALDPELVGEVLNVIRRLASEH--DLTMLLVTHEMGFAREFADRVCFFDKGRI 225
Query: 1475 AEYDSPTKLL-----EREDSFFSQLIK 1496
E P ++ ER F S++I
Sbjct: 226 VEQGKPDEIFRQPKEERTREFLSKVIA 252
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 6e-09
Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 27/198 (13%)
Query: 1294 VVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIP--QDPTLFDG 1351
++G G+GK+T++ I P GS++ D+T + H + +R GI Q PT+F+
Sbjct: 33 IIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQI-ARAGIGRKFQKPTVFEN 91
Query: 1352 -TVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENG---------ENWSV 1401
TV NL+ L DK V+ +L L ++++++ + G S
Sbjct: 92 LTVFENLE-LALPRDKSVFASL----FFRLSAEEKDRIEEVLETIGLADEADRLAGLLSH 146
Query: 1402 GQRQLFCLGRTLLKKSSILVLDEATASVDSA----TDGVIQKIISQEFKDRTVVTIAHRI 1457
GQ+Q +G L++ +L+LDE A + T +++ + +VV + H +
Sbjct: 147 GQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA----GKHSVVVVEHDM 202
Query: 1458 HTVID-SDLVLVLSDGRI 1474
V +D V VL G +
Sbjct: 203 EFVRSIADKVTVLHQGSV 220
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 7e-09
Identities = 66/241 (27%), Positives = 114/241 (47%), Gaps = 43/241 (17%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTF---PGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMG 1318
+ ++ Y HLP + G ++V ++G +G+GKSTL+ I + P G
Sbjct: 2 LKLTDITWLY-HHLP-----MRFDLTVERG-ERVAILGPSGAGKSTLLNLIAGFLTPASG 54
Query: 1319 SIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGN----LDPLVQYSDKQVWEALD 1373
S+ ++ D T R + ++ Q+ LF TV N L+P ++ + Q
Sbjct: 55 SLTLNGQDHTTTP--PSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQ------ 106
Query: 1374 KCQLGDLVR--AKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDS 1431
+ +L + R E+ L + S GQRQ L R L+++ IL+LDE +++D
Sbjct: 107 REKLHAIARQMGIEDLLARLPGQ----LSGGQRQRVALARCLVREQPILLLDEPFSALDP 162
Query: 1432 ATDGVIQKIISQEFKDR--TVVTIAH------RIHTVIDSDLVLVLSDGRIAEYDSPTKL 1483
A + ++SQ ++R T++ ++H RI + LV++DGRIA +D PT
Sbjct: 163 ALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARI-----APRSLVVADGRIA-WDGPTDE 216
Query: 1484 L 1484
L
Sbjct: 217 L 217
|
Length = 232 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 8e-09
Identities = 53/223 (23%), Positives = 85/223 (38%), Gaps = 46/223 (20%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP---TMGSIIIDNVDITKIGLHD 1334
+L ++S + + ++G +GSGK+TL+ AI VE T G I+ +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---DQ 78
Query: 1335 LRSRLGIIPQDPTLFDG-TVRGNLDPLVQYS---------DKQVWEALDKCQLGDLVRAK 1384
+ + + QD L G TVR L K+ E + L R
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALT-RIG 137
Query: 1385 EEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQE 1444
+ + S G+R+ + LL +L+LDE T+ +DS T + +SQ
Sbjct: 138 GNLV--------KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQ- 188
Query: 1445 FKDRTVVTIAHRIHTVIDS------------DLVLVLSDGRIA 1475
+A R VI + D +L+LS G I
Sbjct: 189 --------LARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 9e-09
Identities = 54/255 (21%), Positives = 120/255 (47%), Gaps = 18/255 (7%)
Query: 1266 NLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNV 1325
L + Y ++ +V +N++ P ++G G GKSTL++ + R++ P G + +D
Sbjct: 12 QLTLGYGKY--TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGE 69
Query: 1326 DITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQV---WEALDKCQLGDLVR 1382
I ++ R+G++ Q+ T L +Y + + W D+ + ++
Sbjct: 70 HIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQ 129
Query: 1383 AKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIIS 1442
A + ++ + S GQRQ + L ++++I++LDE T +D + + +++S
Sbjct: 130 AT--GITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLS 187
Query: 1443 QEFKDR--TVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKE-Y 1498
+ +++ T+ + H ++ + ++ L +G+I +P +++ E LI+ Y
Sbjct: 188 ELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAE------LIERIY 241
Query: 1499 SMRSQNFNS-VAGRP 1512
+R + VAG P
Sbjct: 242 GLRCMIIDDPVAGTP 256
|
Length = 265 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 52/226 (23%), Positives = 107/226 (47%), Gaps = 30/226 (13%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ N+ R+ L +++ + V ++G +G GK+T ++ I + EPT G I
Sbjct: 1 VELENVTKRFGNVT--ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLF-DGTVRGNLD-PLVQYS------DKQVWEALD 1373
I D+T + D R + ++ Q+ L+ TV N+ L D++V E +
Sbjct: 59 IGGRDVTDLPPKD-RD-IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAE 116
Query: 1374 KCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDS-- 1431
Q+ L+ K ++L S GQRQ LGR ++++ + ++DE +++D+
Sbjct: 117 LLQIEHLLDRKPKQL-----------SGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKL 165
Query: 1432 --ATDGVIQKIISQEFKDRTVVTIAH-RIHTVIDSDLVLVLSDGRI 1474
++++ Q+ T + + H ++ + +D + V++DG+I
Sbjct: 166 RVQMRAELKRL--QQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 65/252 (25%), Positives = 107/252 (42%), Gaps = 39/252 (15%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I N+ Y + L +S + ++G +G GK+TL++ I PT G I+
Sbjct: 1 IELENVSKFYGGFV--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLD-PL-VQYSDKQ-----VWEALD 1373
+D DIT + H + + + Q+ LF TV N+ L ++ K V EALD
Sbjct: 59 LDGKDITNLPPH--KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALD 116
Query: 1374 KCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT 1433
QL K +L S GQ+Q + R L+ + +L+LDE A
Sbjct: 117 LVQLEGYANRKPSQL-----------SGGQQQRVAIARALVNEPKVLLLDEPL----GAL 161
Query: 1434 DGVIQKIISQEFK---DRTVVTIAHRIH------TVIDSDLVLVLSDGRIAEYDSPTKLL 1484
D ++K + E K +T H T+ SD + V++ G+I + +P ++
Sbjct: 162 DLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTM--SDRIAVMNKGKIQQIGTPEEIY 219
Query: 1485 ER-EDSFFSQLI 1495
E + F + I
Sbjct: 220 EEPANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 42/191 (21%)
Query: 657 VKRGMKVAICGTVGSGKSSLLSCI-----LGEIQKMAGTVKISGTKAYVP---------- 701
+ RG A+ G G GKS++L + L E + G V GT Y P
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95
Query: 702 -----QSPWILTGNIRENILFG---NQYDSCKYDRTVEAC---ALV----KDFELFASGD 746
Q P +I ENI FG N Y + D VE A V KD
Sbjct: 96 IGMVFQQPNPFPKSIYENIAFGARINGY-TGDMDELVERSLRKAAVWDECKD-------- 146
Query: 747 LTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD 806
++ E G ++SGGQ+QR+ IAR + + ++ L+D+P SA+D T ++ + + K+
Sbjct: 147 --KLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDP-ISTLKIEETMHELKKN 203
Query: 807 KSVLYVTHQVE 817
+++ VTH ++
Sbjct: 204 FTIVIVTHNMQ 214
|
Length = 269 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 52/223 (23%), Positives = 94/223 (42%), Gaps = 42/223 (18%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG---------TKA-- 698
+ + ++ G +AI G GSGKS+L + G I+ +G + I+ ++
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 699 --YVPQSP-----------WILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASG 745
+ Q P IL +R N + + T+ L+ D +
Sbjct: 89 IRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY-- 146
Query: 746 DLTEIGERGINM-SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL 804
+M + GQKQR+ +ARA+ I + D+ +++D +QL LM L
Sbjct: 147 ---------PHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLIN--LMLEL 195
Query: 805 KDK---SVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELL 843
++K S +YVT + + +D +LVM G + + G ++L
Sbjct: 196 QEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 1e-08
Identities = 61/235 (25%), Positives = 104/235 (44%), Gaps = 48/235 (20%)
Query: 657 VKRGMKVAICGTVGSGKSSLLSCI--LGEIQK---MAGTVKISGTKAY------------ 699
+++ G G GKS++L + + ++ K G V G Y
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 700 ---VPQSPWILTGNIRENILFG---NQYDSCKYDRTVEA---CAL---VKDFELFASGDL 747
V Q P + +I +N+ FG N+Y DR A AL VKD +L SG
Sbjct: 91 IGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-KLKVSG-- 147
Query: 748 TEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK 807
+++SGGQ+QR+ IARA+ + ++ LLD+P SA+D T+ ++ ++ + KD
Sbjct: 148 -------LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDP-IATRRVEELMVELKKDY 199
Query: 808 SVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGAHSQALES 862
++ VTH ++ + I+Q R G+ V +G +Q ++
Sbjct: 200 TIALVTHNMQQAIRVADTTAFFSVDISQGTR--------TGYLVEMGPTAQIFQN 246
|
Length = 261 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 1e-08
Identities = 43/190 (22%), Positives = 72/190 (37%), Gaps = 64/190 (33%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK--AYVPQSPW 705
L I L + G ++ + G G+GKS+LL I GE++ G V T Y Q
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ--- 70
Query: 706 ILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRI 765
L+G GE K R+
Sbjct: 71 -LSG-----------------------------------------GE---------KMRL 79
Query: 766 QIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKS--VLYVTHQVEFLPA-A 822
+A+ + ++ ++ LLD+P + +D + + L LK+ V+ V+H FL A
Sbjct: 80 ALAKLLLENPNLLLLDEPTNHLDLES-----IEALEEALKEYPGTVILVSHDRYFLDQVA 134
Query: 823 DIILVMENGR 832
I+ +E+G+
Sbjct: 135 TKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 2e-08
Identities = 54/226 (23%), Positives = 98/226 (43%), Gaps = 37/226 (16%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVK-----ISGTKAYVP--- 701
++ + L+V+ G V + G G+GK++L + I G + +GTV I+G +
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79
Query: 702 ------QSPWILTG-NIRENILFGNQYDSC-------KYDRTVEACALVKDFELFASGDL 747
Q + G + EN+ G R E A + EL L
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL 139
Query: 748 TE-IGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD 806
E N+S GQ++R++IARA+ + LLD+P + ++ + L ++++
Sbjct: 140 GELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEE-----TEELAELIRE 194
Query: 807 ------KSVLYVTHQVEFL-PAADIILVMENGR-IAQAGRFEELLK 844
++L + H ++ + AD I+V+ G IA+ G EE+
Sbjct: 195 LRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE-GTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 44/230 (19%), Positives = 89/230 (38%), Gaps = 25/230 (10%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I N+ +R +L ++S + +VG G+GK+TL+ + P+ G +
Sbjct: 32 IELKNVSVRRNGKK--ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVT 89
Query: 1322 IDNVDITKIGLH-DLRSRLGI--------IPQDPTLFDGTVRGNLDPLVQY---SDKQVW 1369
+ K +LR R+G+ T+ D + G + Y +
Sbjct: 90 LLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDL 149
Query: 1370 EALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASV 1429
A L +L+ AK D S G+++ + R L+K +L+LDE +
Sbjct: 150 AAAQ--WLLELLGAKH-LADRPFGS----LSQGEQRRVLIARALVKDPELLILDEPAQGL 202
Query: 1430 D-SATDGVIQKI--ISQEFKDRTVVTIAHRIHTVIDS-DLVLVLSDGRIA 1475
D A + ++ ++ ++ ++ + H + L+L +G +
Sbjct: 203 DLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (139), Expect = 2e-08
Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 26/228 (11%)
Query: 633 EVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCI------------ 680
E+ N F W + L + L +KR A G G GKS+ L +
Sbjct: 82 EIRNFNF-WYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 681 LGEI--------QKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEA 732
GEI K ++++ V Q P +I +N+ +G + + DR +
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGIN-DRKILE 199
Query: 733 CALVKDFELFASGDLT--EIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAH 790
+ K + A D ++ + G +SGGQ+QR+ IARA+ + ++ L+D+P SA+D
Sbjct: 200 KIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDP- 258
Query: 791 TGTQLFKDCLMGILKDKSVLYVTHQV-EFLPAADIILVMENGRIAQAG 837
T ++ ++ + K S++ VTH + + +D + G I +AG
Sbjct: 259 IATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306
|
Length = 329 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 33/160 (20%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVP----QSPW 705
G+ + G + + G GSGK++LL I G + AGT+K+ G P +
Sbjct: 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHY 77
Query: 706 I---------LTGNIRENILF-----GNQYDSCKYDRTVEACALVKDFELFASGDLTEIG 751
+ LT + EN+ F G + + A + L L +
Sbjct: 78 LGHRNAMKPALT--VAENLEFWAAFLGG------EELDIAAAL--EAVGL---APLAHL- 123
Query: 752 ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHT 791
+S GQK+R+ +AR + + I++LD+P +A+DA
Sbjct: 124 -PFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 34/177 (19%)
Query: 1278 VLKNIS-CTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLR 1336
+ +S G V + G GSGK+TL++ I ++ P G+I +D DI D+
Sbjct: 17 LFSGLSFTLAAGEALV-LTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID---DPDVA 72
Query: 1337 SR---LGIIPQD---PTLFDGTVRGNLDPLVQY---SDKQVWEALDKCQLGDL--VRAKE 1385
LG ++ P L TV NL+ + + + AL+ L L +
Sbjct: 73 EACHYLG--HRNAMKPAL---TVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFG- 126
Query: 1386 EKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIIS 1442
S GQ++ L R L+ I +LDE TA++D+A + ++I
Sbjct: 127 ------------YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIR 171
|
Length = 207 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 42/183 (22%), Positives = 71/183 (38%), Gaps = 25/183 (13%)
Query: 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTM-- 1317
G + N+ +R +L N++ T + V ++G +G GKSTL+ + +
Sbjct: 1 GMLCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSC 58
Query: 1318 -GSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNL------DPLVQYSDKQVW 1369
G + ++ + + + ++GI+ QD LF +V NL
Sbjct: 59 TGELWLNEQRLDMLPAA--QRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAAN 116
Query: 1370 EALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASV 1429
AL++ L L S GQR L R LL + L+LDE + +
Sbjct: 117 AALERSGLDGAFHQDPATL-----------SGGQRARVALLRALLAQPKALLLDEPFSRL 165
Query: 1430 DSA 1432
D A
Sbjct: 166 DVA 168
|
Length = 213 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 2e-08
Identities = 56/257 (21%), Positives = 98/257 (38%), Gaps = 17/257 (6%)
Query: 1228 ISVERILQYS---NLPSEAPLVTEECRPPSNWPD--VGTISFHNLQIRYAE---HLPSVL 1279
I+ +R+ + N P +++ D V +I ++ + L
Sbjct: 299 IACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFAL 358
Query: 1280 KNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339
I V +VG G GKSTL + + P G I++D ++ D R
Sbjct: 359 GPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLF 418
Query: 1340 GIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENW 1399
I D LFD + D S + L + ++ D V+ ++ +T A
Sbjct: 419 SAIFADFHLFDDLIGP--DEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTA-----L 471
Query: 1400 SVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDR--TVVTIAHRI 1457
S GQ++ L L+ IL+ DE A D A + + + K + T++ I+H
Sbjct: 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDD 531
Query: 1458 HTVIDSDLVLVLSDGRI 1474
+D ++ L+ G I
Sbjct: 532 QYFELADQIIKLAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (137), Expect = 2e-08
Identities = 60/262 (22%), Positives = 118/262 (45%), Gaps = 39/262 (14%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PT 1316
I +NL Y +L+ +S K ++G +G GKST ++ + R+ E
Sbjct: 8 IKVNNLSFYYDTQ--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRV 65
Query: 1317 MGSIIIDNVDI--TKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQV-WEALD 1373
G + N +I ++ L+ LR ++ ++ P LF +V N V Y K V W
Sbjct: 66 EGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDN----VAYGVKIVGWRP-- 119
Query: 1374 KCQLGDLV----RAKE--EKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATA 1427
K ++ D+V + + +++ + ++ + S GQ+Q C+ R L K +L++DE
Sbjct: 120 KLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCF 179
Query: 1428 SVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLE 1485
+D ++ +I + T+V ++H +H V R++++ T +
Sbjct: 180 GLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQV-----------SRLSDF---TAFFK 225
Query: 1486 REDSFFSQLIKEYSMRSQNFNS 1507
++ QL+ E+ + + FNS
Sbjct: 226 GNENRIGQLV-EFGLTKKIFNS 246
|
Length = 261 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 2e-08
Identities = 44/182 (24%), Positives = 85/182 (46%), Gaps = 32/182 (17%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
++V N F ++ + L+G+ +++ + AI G G GKS+ L C L + ++ V
Sbjct: 8 IKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKC-LNRMNELESEV 63
Query: 692 KISGTKAYVPQSPWILTGNI------------RENILFGNQYDSCKY------------- 726
++ G + Q+ + N+ + N+ + YD+ Y
Sbjct: 64 RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEI 123
Query: 727 DRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSA 786
D VE+ +KD +L+ +I + +++SGGQ+QR+ IARA+ + L+D+P
Sbjct: 124 DDIVESA--LKDADLWDEIK-HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFG 180
Query: 787 VD 788
+D
Sbjct: 181 LD 182
|
Length = 261 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 64/245 (26%), Positives = 112/245 (45%), Gaps = 43/245 (17%)
Query: 638 KFSWNPESSSPT-LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT 696
K+ N ES+ LD + L+VK+G + I G GSGKS++ + + G V + G
Sbjct: 13 KYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGL 72
Query: 697 KAYVPQSPWILTGNIREN--ILFGNQYDSCKYDRTVEACALVKDFELFASGDL----TEI 750
++ W +IR ++F N D + A +V++ F +L EI
Sbjct: 73 DTSDEENLW----DIRNKAGMVFQNP------DNQIVA-TIVEEDVAFGPENLGIPPEEI 121
Query: 751 GER------GINM-----------SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGT 793
ER + M SGGQKQR+ IA + + + D+P + +D +G
Sbjct: 122 RERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDP-SGR 180
Query: 794 QLFKDCLMGILKDK--SVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ-----N 846
+ + + + K +++ +TH +E AD I+VM++G++ G +E+ K+
Sbjct: 181 REVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKEVEMMKK 240
Query: 847 IGFEV 851
IG +V
Sbjct: 241 IGLDV 245
|
Length = 280 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 42/184 (22%), Positives = 75/184 (40%), Gaps = 27/184 (14%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWIL 707
+G+ + G + + G G GK++LL + G ++ +G V+ +GT +
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEP-- 71
Query: 708 TGNIRENILFGNQYDSCKYDRTVEA-----CALVKDFELFASGDLTEIGERGIN------ 756
NIL+ K + + A+ + L +G G
Sbjct: 72 ----HRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQ 127
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK-----SVLY 811
+S GQ++R+ +AR A +++LD+P +A+D G L G+L+ VL
Sbjct: 128 LSAGQQRRLALARLWLSRAPLWILDEPTTALDK-AGVALL----AGLLRAHLARGGIVLL 182
Query: 812 VTHQ 815
THQ
Sbjct: 183 TTHQ 186
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 3e-08
Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 47/218 (21%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
++V + F +N +S ++GI + + R AI G G GKS+ + L I ++ G V
Sbjct: 8 IKVKDLSFYYN---TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIK-TLNRISELEGPV 63
Query: 692 KISGTKAY---------------------VPQSPWILTGNIRENILFG----NQYDSCKY 726
K+ G + V Q P +I EN+ +G +
Sbjct: 64 KVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADL 123
Query: 727 DRTVEAC----AL---VKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYL 779
D VE+ AL VKD ++ + + +SGGQ+QR+ IARA+ + L
Sbjct: 124 DEIVESALKGAALWQEVKD----------KLNKSALGLSGGQQQRLCIARALAIKPKVLL 173
Query: 780 LDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVE 817
+D+P SA+D T ++ + + + ++ VTH ++
Sbjct: 174 MDEPCSALDP-IATMKVEELIHSLRSELTIAIVTHNMQ 210
|
Length = 259 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 39/211 (18%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQ---KMAGTVKISGTK-AYVP---- 701
L + + +G V + G G GKS+LLS ++G + G + ++ + +P
Sbjct: 18 LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77
Query: 702 ------QSPWILTG-NIRENILF-------GNQYDSCKYDRTVEACALVKDFELFASGDL 747
Q + ++ +N+LF GN + +E L F +
Sbjct: 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANA-ALERSGLDGAFHQDPA--- 133
Query: 748 TEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK 807
+SGGQ+ R+ + RA+ LLD+PFS +D Q F+ + ++
Sbjct: 134 --------TLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQ-FRQWVFSEVRAA 184
Query: 808 S--VLYVTHQVEFLPAADIILVMENGRIAQA 836
+ VTH ++ +PA V+E + Q
Sbjct: 185 GIPTVQVTHDLQDVPAGS--RVIEMAQWEQN 213
|
Length = 213 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 45/239 (18%)
Query: 651 DGIQLKVKRGMKVAICGTVGSGKSSLLSCILG----EIQKMAGTVKISGTK--------- 697
+ L +KRG +A+ G GSGKS ILG + + +G + + G
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR 62
Query: 698 --AYVPQSP-------WILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLT 748
A + Q+P + + + E + + +EA L A G
Sbjct: 63 HIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEA--------LEAVG--L 112
Query: 749 EIGERGIN-----MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI 803
E + +SGG QR+ IA A+ + + D+P + +D ++ K L +
Sbjct: 113 PDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKL-LREL 171
Query: 804 LKDK--SVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELLKQNIGFEV---LVGAH 856
+ +L +TH + + AD + VM++GRI + G +E+ N E L+ AH
Sbjct: 172 RQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIF-YNPKHETTRKLLSAH 229
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 3e-08
Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 45/186 (24%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEI-QKMAGTVKI--SGTKAYVPQSPWI 706
L + ++K G ++ I G G+GKSSL L + +G + + ++PQ P++
Sbjct: 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFR-ALAGLWPWGSGRIGMPEGEDLLFLPQRPYL 75
Query: 707 LTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766
G +RE +++ +D +SGG++QR+
Sbjct: 76 PLGTLREQLIY-------PWDDV---------------------------LSGGEQQRLA 101
Query: 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK--SVLYVTHQVEFLPAADI 824
AR + LD+ SA+D + +D L +LK+ +V+ V H+ D
Sbjct: 102 FARLLLHKPKFVFLDEATSALDEES-----EDRLYQLLKELGITVISVGHRPSLWKFHDR 156
Query: 825 ILVMEN 830
+L ++
Sbjct: 157 VLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 4e-08
Identities = 54/213 (25%), Positives = 103/213 (48%), Gaps = 25/213 (11%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG---LHD 1334
VLK +S + + V +VG +GSGKSTL+ + + PT G ++ + ++K+
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 1335 LRSR-LGIIPQ-DPTLFDGTVRGNLD-PL------VQYSDKQVWEALDKCQLGDLVRAKE 1385
LR++ LG I Q L D T N+ PL V+ + ++ +E L+K L + +
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP 139
Query: 1386 EKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF 1445
+L S G+RQ + R L+ + S+++ DE T ++D+ +I ++ +
Sbjct: 140 SEL-----------SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELN 188
Query: 1446 KDR--TVVTIAHRIHTVIDSDLVLVLSDGRIAE 1476
++ + + + H + D VL + DG++
Sbjct: 189 RELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 47/210 (22%), Positives = 96/210 (45%), Gaps = 25/210 (11%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRI--------V 1313
+ ++ + Y E L ++ P + +G +G GKST ++ + R+ V
Sbjct: 20 MRARDVSVFYGEK--QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRV 77
Query: 1314 EPTMGSIIIDNVDI--TKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEA 1371
G I +D DI ++ + +LR+R+G++ Q P F ++ N V Y + A
Sbjct: 78 T---GKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYEN----VAYGPRIHGLA 130
Query: 1372 LDKCQLGDLVRAKEEK------LDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEA 1425
K +L ++V K + + E G S GQ+Q C+ R + ++++DE
Sbjct: 131 RSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEP 190
Query: 1426 TASVDSATDGVIQKIISQEFKDRTVVTIAH 1455
+++D ++++I + ++ T+V + H
Sbjct: 191 CSALDPIATAKVEELIDELRQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 4e-08
Identities = 50/196 (25%), Positives = 80/196 (40%), Gaps = 42/196 (21%)
Query: 609 YLQED--EIQRDAVEY-VPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKV-----KRG 660
YL E+ I+ + +E+ R E E E + + + L L+V G
Sbjct: 311 YLPEENMRIRPEPIEFEERPPRDESERETL---VEY--PDLTKKLGDFSLEVEGGEIYEG 365
Query: 661 MKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQ 720
+ I G G GK++ + G ++ G V +Y PQ
Sbjct: 366 EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQ------------------ 407
Query: 721 YDSCKYDRTVEAC--ALVKDF-------ELFASGDLTEIGERGIN-MSGGQKQRIQIARA 770
Y YD TVE ++ D E+ L + ++ + +SGG+ QR+ IA
Sbjct: 408 YIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAAC 467
Query: 771 VYQDADIYLLDDPFSA 786
+ +DAD+YLLD+P SA
Sbjct: 468 LSRDADLYLLDEP-SA 482
|
Length = 590 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 5e-08
Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 52/222 (23%)
Query: 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT 690
EV +NG W + + L I L + AI G G GKS+ + L + +M
Sbjct: 11 EVYQINGMNLWYGQHHA--LKNINLSIPENEVTAIIGPSGCGKSTFIK-TLNLMIQMVPN 67
Query: 691 VKISGTKAY----------------------------VPQSPWILTGNIRENILFGNQYD 722
VK++G Y PQS I +N+ +G +
Sbjct: 68 VKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQS-------IFDNVAYGPRIH 120
Query: 723 SCKYDRTVEACA--LVKDFELFASGDLTEIGER----GINMSGGQKQRIQIARAVYQDAD 776
K + ++ +KD L+ E+ +R +++SGGQ+QR+ IARA+ + D
Sbjct: 121 GTKNKKKLQEIVEKSLKDVALW-----DEVKDRLHTQALSLSGGQQQRLCIARALATNPD 175
Query: 777 IYLLDDPFSAVDAHTGTQLFKDCLMGILKDK-SVLYVTHQVE 817
+ L+D+P SA+D + ++ + L+ LK+K +++ VTH ++
Sbjct: 176 VLLMDEPTSALDPVSTRKI--EELILKLKEKYTIVIVTHNMQ 215
|
Length = 259 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 5e-08
Identities = 57/219 (26%), Positives = 99/219 (45%), Gaps = 29/219 (13%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCI-----LGEIQKMAGTVKISGTKAY----- 699
L+ I +K+ + A+ G G GKS+ L + L E K+ G V G Y
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 700 ----------VPQSPWILTGNIRENILFGNQY----DSCKYDRTVEACALVKDFELFASG 745
V Q+P +I +NI +G + D K D VE +L K
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQ-SLKKSALWNEVK 141
Query: 746 DLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK 805
D ++ +++SGGQ+QR+ IAR + + ++ L+D+P SA+D T ++ ++ + +
Sbjct: 142 D--KLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDP-ISTGKIEELIINLKE 198
Query: 806 DKSVLYVTHQVEFL-PAADIILVMENGRIAQAGRFEELL 843
+++ VTH ++ +D NG I + +EL
Sbjct: 199 SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237
|
Length = 254 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 27/163 (16%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKI------G 1331
+ ++S T + + + G G+GK+TL++ + ++ P G + I +
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQA 76
Query: 1332 LHDLRSRLGIIPQDPTLFDGTVRGNL----DPLVQYSDKQVWEALDKCQLGDLVRAKEEK 1387
L L + GI + T NL + +WEAL + L L
Sbjct: 77 LLYLGHQPGIKT------ELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL------- 123
Query: 1388 LDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD 1430
D V S GQ++ L R L + + +LDE ++D
Sbjct: 124 EDLPVG----QLSAGQQRRVALARLWLSPAPLWILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 5e-08
Identities = 64/219 (29%), Positives = 99/219 (45%), Gaps = 33/219 (15%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSL---LSCILGEIQKMAGTVKISGTKAYVPQSPWI 706
LDG+ ++RG +A+ G G GKS+L L+ I E G + G
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI--E-TPTGGELYYQGQDLLKADPEAQ 87
Query: 707 LTGNIRENILFGNQYDSCKYDRTVEAC---ALVKDFELFAS-------------GDLTEI 750
+ I+F N Y S + V L+ + L A+ G E
Sbjct: 88 KLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH 147
Query: 751 GERGINM-SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK-- 807
+R +M SGGQ+QRI IARA+ D D+ + D+P SA+D Q+ LM L+ +
Sbjct: 148 YDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLN--LMMDLQQELG 205
Query: 808 -SVLYVTHQ---VEFLPAADIILVMENGRIAQAGRFEEL 842
S ++++H VE + AD ++VM GR + G E++
Sbjct: 206 LSYVFISHDLSVVEHI--ADEVMVMYLGRCVEKGTKEQI 242
|
Length = 327 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 35/214 (16%)
Query: 660 GMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENIL--- 716
G + I G GSGKS+LL C+ G + GT ++ + L+ R ++
Sbjct: 29 GEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYI-MRSGAELELYQLSEAERRRLMRTE 87
Query: 717 --FGNQYDSCKYDRTVEACALVKDFELFASG--------------------DLTEIGERG 754
F +Q V A A + + L A G D T I +
Sbjct: 88 WGFVHQNPRDGLRMRVSAGANIGE-RLMAIGARHYGNIRATAQDWLEEVEIDPTRIDDLP 146
Query: 755 INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK--SVLYV 812
SGG +QR+QIAR + + +D+P +D +L D L G+++D +V+ V
Sbjct: 147 RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLLRGLVRDLGLAVIIV 205
Query: 813 THQ---VEFLPAADIILVMENGRIAQAGRFEELL 843
TH L A +LVM+ GR+ ++G +++L
Sbjct: 206 THDLGVARLL--AQRLLVMQQGRVVESGLTDQVL 237
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 6e-08
Identities = 48/198 (24%), Positives = 78/198 (39%), Gaps = 47/198 (23%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------KAYVPQS 703
L + L +++G + + G G+GK++LL + G + G V+I+G +P
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPL- 76
Query: 704 PWILTGNIRENILFGNQYDSCKYDRTV-EACALVKDFELFASG-DLTEIGER-------- 753
+R I Q DRTV E AL L G EI R
Sbjct: 77 -------LRRRIGVVFQDFRLLPDRTVYENVALP----LEVRGKKEREIQRRVGAALRQV 125
Query: 754 ---------GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL 804
+SGG++QR+ IARA+ + L D+P +D + ++ +L
Sbjct: 126 GLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSER-----ILDLL 180
Query: 805 KD-----KSVLYVTHQVE 817
K +V+ TH +
Sbjct: 181 KRLNKRGTTVIVATHDLS 198
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 6e-08
Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 35/218 (16%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
++ + L V G V + G G+GK++ ++G + + AG + I
Sbjct: 19 VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARR 78
Query: 698 --AYVPQSPWILTGNIRENILFGN-------QYDSCKYDRTVEACALVKDFELFASGDLT 748
Y+PQ I R ++ N + D R A L+++F + D
Sbjct: 79 GIGYLPQEASIF----RRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRD-- 132
Query: 749 EIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK- 807
G ++SGG+++R++IARA+ + LLD+PF+ VD + + + ++ L+D
Sbjct: 133 ---SMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKR--IIEHLRDSG 187
Query: 808 -SVLYVTHQV-EFLPAADIILVMENGRIAQAGRFEELL 843
VL H V E L + ++ G + G E+L
Sbjct: 188 LGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225
|
Length = 241 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 6e-08
Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 42/231 (18%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
+L ++S T + V ++G G+GKSTL++A+ + P G + ++ + +L
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELAR 76
Query: 1338 RLGIIPQDPTL-FDGTVR-----GNLDPLVQYSDKQ---VWEALDKCQLGDLVRAKEEKL 1388
R ++PQ +L F TV G P + V AL + L L +L
Sbjct: 77 RRAVLPQHSSLSFPFTVEEVVAMG-RAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQL 135
Query: 1389 DSTVAENGENWSVGQRQLFCLGRTLL------KKSSILVLDEATASVDSATDGVIQKIIS 1442
S G++Q L R L L+LDE T+++D A + ++
Sbjct: 136 -----------SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLAR 184
Query: 1443 QEFKDR--TVVTIAHRIHTVID-------SDLVLVLSDGRIAEYDSPTKLL 1484
Q +R V+ + H D +D +++L GR+ +P ++L
Sbjct: 185 QLAHERGLAVIVVLH------DLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 6e-08
Identities = 47/164 (28%), Positives = 70/164 (42%), Gaps = 25/164 (15%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYV---PQSP 704
P L + L V G VA+ G G+GKS+LL + +G + + A+V SP
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 705 WILTGNIRENILFGNQYDSC-------------KYDRTVE-ACALVKDFELFASGDLTEI 750
+ R+ I + +Q+ +R V A + EL A I
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLA---RLNI 138
Query: 751 GER-----GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDA 789
ER SGG++QR+ IAR D I LLD+P +++DA
Sbjct: 139 PERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDA 182
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 6e-08
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 12/94 (12%)
Query: 755 INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKS------ 808
++SGG+KQR+ I RA+ ++ L+D+P +++D K L+ L+ +
Sbjct: 127 GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR-----KRELLPYLERLAREINIP 181
Query: 809 VLYVTHQV-EFLPAADIILVMENGRIAQAGRFEE 841
+LYV+H + E L AD ++V+E G++ G EE
Sbjct: 182 ILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEE 215
|
Length = 352 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 6e-08
Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 37/220 (16%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKA----------- 698
LD + + ++G V G G+GKS+ + I G + +G+V++ G
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNI 77
Query: 699 -YVPQ-SPWILTGNIRENILF-GNQY---DSCKYDRT---VEACALVKDFELFASGDLTE 749
Y+P+ +P L +RE + F Y R +E L + +
Sbjct: 78 GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE-------QHKK 130
Query: 750 IGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQL--FKDCLMGILKDK 807
IG+ +S G +QR+ +A+A+ D + +LD+P + +D + QL ++ + I KDK
Sbjct: 131 IGQ----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPN---QLVEIRNVIKNIGKDK 183
Query: 808 SVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQN 846
+++ TH ++ + A D ++++ G+I + +EL N
Sbjct: 184 TIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAAN 223
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 6e-08
Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 17/176 (9%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709
G+ + G + + G GSGK++LL + G +AG V ++G +
Sbjct: 16 FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSI---- 71
Query: 710 NIRENILFGNQYDSCKYDRTVEA-----CALVKD---FELFASGDLTEIGERGIN-MSGG 760
+L+ K +V A D E A L +R + +S G
Sbjct: 72 --ARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAG 129
Query: 761 QKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQ 815
Q++R+ +AR + +++LD+P +A+D G F + + G + V+ THQ
Sbjct: 130 QQRRVALARLLLSGRPLWILDEPTTALDK-AGVARFAEAMAGHCARGGMVVLTTHQ 184
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 6e-08
Identities = 61/217 (28%), Positives = 98/217 (45%), Gaps = 38/217 (17%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG----------EIQKMAGTVKISGTKAY 699
L + L + G VA+ G GSGKS+LL + G I+ + TV+ G A
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 700 VPQSPWILTG------------NIRENILFGNQYDSCKYDRTVEA--CALVKDFELFASG 745
+ TG ++ EN+L G S + RT + K L A
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIG-ALGSTPFWRTCFSWFTREQKQRALQA-- 136
Query: 746 DLTEIG------ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDC 799
LT +G +R +SGGQ+QR+ IARA+ Q A + L D+P +++D + ++ D
Sbjct: 137 -LTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESA-RIVMDT 194
Query: 800 LMGILKDKSVLYVT--HQVEF-LPAADIILVMENGRI 833
L I ++ + V HQV++ L + I+ + G +
Sbjct: 195 LRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231
|
Length = 262 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 7e-08
Identities = 105/528 (19%), Positives = 197/528 (37%), Gaps = 90/528 (17%)
Query: 360 LAFLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYM 419
+F G ++ + + G+ + A L L K L + + +I +
Sbjct: 57 FSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLL 116
Query: 420 SVDVQRISDFIFYSNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQ 479
+ D+ +I+ F+F P+ I+LAI+ + LA L+ + +T + I
Sbjct: 117 THDIDQINAFLF-----IFPPIAIALAIFFF----CIAYLAYLSVPMFAITISAIIIGTA 167
Query: 480 K---------RFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQK---LESLRQVE 527
+F D +D T + K LK+ ES +
Sbjct: 168 AQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIA 227
Query: 528 CIWLWKSLRLSATSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVL-----SALATFRM- 581
L IF + F ++ F +L+G L A + +A++ F +
Sbjct: 228 --------DLHIIEILIFIAAENFGQLLFF---LLIGCALFAAAMFASIDAAAISAFVLA 276
Query: 582 ---LQDPIFNLPDLLSNIAQGKVSADRIAAY---LQEDE-----IQRDAVEYVPKGRSEF 630
++ P+ L L +AQ +++ R+A + E E D V + +S
Sbjct: 277 LLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVD 336
Query: 631 EVEVVNGKFSW-NPESSSP-TLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMA 688
+E+ + + PE S L I L++ +G V I G G GKS+L G
Sbjct: 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG------ 390
Query: 689 GTVKISGTKAYVPQSPWIL------TGNIRENI------------LFGN--QYDSCKYDR 728
Y+PQ IL + + R++ LF + D ++
Sbjct: 391 ---------LYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHAS 441
Query: 729 TVEACALVKDFELFASGDLTEIG-ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAV 787
A ++ E+ + + G +S GQ++R+ + A +D I L D+ ++A
Sbjct: 442 LDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDE-WAAD 500
Query: 788 DAHTGTQLFKDCLMGILK--DKSVLYVTHQVEFLPAADIILVMENGRI 833
+ F + L+ LK K+++ ++H ++ AD I+ + G I
Sbjct: 501 QDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 7e-08
Identities = 52/209 (24%), Positives = 96/209 (45%), Gaps = 37/209 (17%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSP----- 704
LD + LKV+ A+ G G+GKS+LL C+ G QK +G++ G + S
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73
Query: 705 ----------WILTGNIRENILFGNQY-------DSCKYDRTVEACALVKDFELFASGDL 747
+L ++ +N+ G +Y D K R +A +F D+
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLG-RYPTKGMFVDQDKMYRDTKA--------IFDELDI 124
Query: 748 -TEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD 806
+ + +S Q Q I+IA+A +A I ++D+P S++ LF ++ LK+
Sbjct: 125 DIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT--IIRKLKE 182
Query: 807 K--SVLYVTHQV-EFLPAADIILVMENGR 832
+ ++Y++H++ E D I ++ +G+
Sbjct: 183 RGCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 7e-08
Identities = 52/216 (24%), Positives = 92/216 (42%), Gaps = 40/216 (18%)
Query: 1292 VGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDIT-KIGLHDLRSRLGIIPQDPTL-F 1349
+G++G G GK+T I+ + +++P G I I+ ++ K PQ +
Sbjct: 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYK-------------PQYIKADY 74
Query: 1350 DGTVRGNLDPLVQ--YSDKQVW--EALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405
+GTVR L + + Y+ + E Q+ + LD V E S G+ Q
Sbjct: 75 EGTVRDLLSSITKDFYTHPY-FKTEIAKPLQIEQI-------LDREVPE----LSGGELQ 122
Query: 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQ--EFKDRTVVTIAHRIHTVID- 1462
+ L K + I +LDE +A +D + K+I + E ++T + H I +ID
Sbjct: 123 RVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDY 181
Query: 1463 -SDLVLVLSDGRIAEY---DSPTKLLEREDSFFSQL 1494
+D ++V +G + + P L + F L
Sbjct: 182 LADRLIVF-EGEPSVNGVANPPQSLRSGMNRFLKNL 216
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 7e-08
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 16/89 (17%)
Query: 758 SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI--------LKDKSV 809
SGGQ+QR+ + RA+ ++ ++L D+P S +DA Q M + LK S
Sbjct: 136 SGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ------MRLEIQRLHRRLKTTS- 188
Query: 810 LYVTH-QVEFLPAADIILVMENGRIAQAG 837
LYVTH QVE + AD ++VM G Q G
Sbjct: 189 LYVTHDQVEAMTLADRVVVMNGGVAEQIG 217
|
Length = 356 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 8e-08
Identities = 57/202 (28%), Positives = 86/202 (42%), Gaps = 46/202 (22%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCI------------LGEI----------QKM 687
L I + V A+ G G GKS+ L C GEI
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 688 AGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCK----YDRTVE----ACAL---V 736
+++ + V Q P +I EN+ +G + K + VE AL V
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV 151
Query: 737 KDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLF 796
KD +G+ N+SGGQ+QR+ IARA+ D +I L D+P SA+D +
Sbjct: 152 KD----------RLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASI- 200
Query: 797 KDCLMGILKDK-SVLYVTHQVE 817
+ L+ LK+K ++L VTH ++
Sbjct: 201 -EELISDLKNKVTILIVTHNMQ 221
|
Length = 265 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 8e-08
Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 27/217 (12%)
Query: 1277 SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG---LH 1333
V+KNIS T + +G+VG +GSGKST A+ R++ + G I D + + L
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLL 358
Query: 1334 DLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQ-VWEALDKCQLGDLVRAKEEKLDSTV 1392
+R R+ ++ QDP +L+P + + Q + E L Q +E+++ + +
Sbjct: 359 PVRHRIQVVFQDPN-------SSLNP--RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVM 409
Query: 1393 AENG----------ENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIIS 1442
E G +S GQRQ + R L+ K S+++LDE T+S+D I ++
Sbjct: 410 EEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLK 469
Query: 1443 --QEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAE 1476
Q+ + I+H +H V V+VL G + E
Sbjct: 470 SLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506
|
Length = 529 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 9e-08
Identities = 59/237 (24%), Positives = 112/237 (47%), Gaps = 51/237 (21%)
Query: 632 VEVVNGKFSWNPESSSPT--LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAG 689
++ N + ++P + LD I +++ G VA+ G GSGKS+L+ ++ +G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 690 TVKISGTKAYVPQSPWILTGN-----IRENILFGNQYDSCK-YDRTVEACALVKDFEL-- 741
T+ I+G P+ TGN +R+ + Q+ + ++ TV +KD E
Sbjct: 63 TITIAG-YHITPE-----TGNKNLKKLRKKVSLVFQFPEAQLFENTV-----LKDVEFGP 111
Query: 742 --FASGD----------LTEIG--ERGIN-----MSGGQKQRIQIARAVYQDADIYLLDD 782
F + L ++G E I+ +SGGQ +R+ IA + + +I LD+
Sbjct: 112 KNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDE 171
Query: 783 PFSAVDAHTGTQLFKDCLMGILKD-----KSVLYVTHQVEFLPA-ADIILVMENGRI 833
P + +D ++ + + KD +V+ VTH ++ + AD +LV+E+G++
Sbjct: 172 PAAGLDPEGRKEMMQ-----LFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
|
Length = 287 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 9e-08
Identities = 50/241 (20%), Positives = 92/241 (38%), Gaps = 46/241 (19%)
Query: 1226 KMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCT 1285
K+ + + V + F N+ Y +LK++S
Sbjct: 289 KLEARLAEERPVEEGKPLAFRFPPPGKRLG-KLV--LEFENVSKGYDGGRL-LLKDLSFR 344
Query: 1286 FPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIII-DNVDITKIGLHDLRSRLGIIPQ 1344
++ +VG G+GKSTL++ + + P G++ + + V ++G Q
Sbjct: 345 IDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETV------------KIGYFDQ 392
Query: 1345 DPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDL---VRA-------KEEKLDSTVAE 1394
R LDP DK V E L + VRA E + V
Sbjct: 393 H--------RDELDP-----DKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGV 439
Query: 1395 NGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIA 1454
S G++ L + LL+ ++L+LDE T +D + +++ + +F+ TV+ ++
Sbjct: 440 L----SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL-LDFEG-TVLLVS 493
Query: 1455 H 1455
H
Sbjct: 494 H 494
|
Length = 530 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 9e-08
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 39/217 (17%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLS------------CILGEIQKMAGTVKISGTK 697
L+ L K+ + GT GSGKS+++ I+G+ A KI K
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 698 ------AYVPQSP--WILTGNIRENILFG------NQYDSCKYDRTVEACALVKDFELFA 743
V Q P + I ++I FG N+ ++ Y + E LV+ E +
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEA--YKKVPELLKLVQLPEDYV 144
Query: 744 SGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI 803
E +SGGQK+R+ +A + D + +LD+P +D G + F + +
Sbjct: 145 KRSPFE-------LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP-KGEEDFINLFERL 196
Query: 804 LKD--KSVLYVTHQV-EFLPAADIILVMENGRIAQAG 837
K+ K ++ VTH + + L AD ++VM G++ G
Sbjct: 197 NKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233
|
Length = 289 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 9e-08
Identities = 59/216 (27%), Positives = 94/216 (43%), Gaps = 30/216 (13%)
Query: 653 IQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKI------SGTKA-------- 698
+ + + G VAI G GSGKS+LL + G +Q +GTV I +G K
Sbjct: 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRK 85
Query: 699 ---YVPQSP--WILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTE-IGE 752
V Q P + + ++I FG E A K E+ L E +
Sbjct: 86 KVGIVFQFPEHQLFEETVEKDICFGPMNFGVS-----EEDAKQKAREMIELVGLPEELLA 140
Query: 753 RG-INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK--SV 809
R +SGGQ +R+ IA + + ++ +LD+P + +D G + + + K+K +
Sbjct: 141 RSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK-GRKEMMEMFYKLHKEKGLTT 199
Query: 810 LYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLK 844
+ VTH +E AD I+VM G + G E+
Sbjct: 200 VLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235
|
Length = 290 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 53/232 (22%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG----EIQKMAGTVKISGTKAYVPQSPW 705
L G+ L VK G AI G GSGKS+L I+G E+ + G + G +
Sbjct: 20 LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTE--GEILFDG------ED-- 69
Query: 706 ILTGNI----RENILFGNQYDS------------CKYDRTVEACALVKDFELFASGDLTE 749
IL + R I QY + A ++ +F
Sbjct: 70 ILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAEL 129
Query: 750 IG------ERGINM--SGGQKQRIQIARAVYQDADIYLLDDPFSA--VDAHTGTQLFKDC 799
+G ER +N SGG+K+R +I + + + + +LD+P S +DA K
Sbjct: 130 LGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDA------LKIV 183
Query: 800 LMGI--LKDK--SVLYVTHQVEFLPA--ADIILVMENGRIAQAGRFEELLKQ 845
GI L+++ VL +TH L D + V+ +GRI ++G EL ++
Sbjct: 184 AEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG-DPELAEE 234
|
Length = 251 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 58/225 (25%), Positives = 96/225 (42%), Gaps = 45/225 (20%)
Query: 1266 NLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNV 1325
+ RY E +VL + P + V VVGR+G GKSTL++ + + P+ G ++
Sbjct: 17 AVSKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTA 74
Query: 1326 DITKIGLHDLRSRLGIIPQDPTLF------DGT---VRGNLDPLVQYSDKQVWEALDKCQ 1376
L + R ++ QD L D ++G +AL
Sbjct: 75 P-----LAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRD-------AALQALAAVG 122
Query: 1377 LGDLVRAKEEKLDSTVAENGENW----SVGQRQLFCLGRTLLKKSSILVLDEATASVDSA 1432
L D RA E W S GQ+Q L R L+ + +L+LDE ++D+
Sbjct: 123 LAD--RANE-------------WPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDAL 167
Query: 1433 TDGVIQKIISQEFKDR--TVVTIAHRI-HTVIDSDLVLVLSDGRI 1474
T +Q +I ++ TV+ + H + V +D VL++ +G+I
Sbjct: 168 TRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 26/178 (14%)
Query: 663 VAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------KAYVPQSPWI---------L 707
+ I G G+GK++LL + G ++ AG V G ++Y ++ L
Sbjct: 31 LQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTEL 90
Query: 708 TGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQI 767
T EN+ F ++ T+ L ++ +S GQ++R+ +
Sbjct: 91 T--ALENLHFWQRFHGSGNAATIWEAL-----AQVGLAGLEDLPVG--QLSAGQQRRVAL 141
Query: 768 ARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCL-MGILKDKSVLYVTHQVEFLPAADI 824
AR A +++LD+PF+A+D G L + + VL THQ + +A I
Sbjct: 142 ARLWLSPAPLWILDEPFTALDKE-GVALLTALMAAHAAQGGIVLLTTHQPLPIASAQI 198
|
Length = 209 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 1e-07
Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 25/174 (14%)
Query: 1267 LQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN-- 1324
L++ + + L + ++ T P + + GR+G+GK++LI AI + P G I+++
Sbjct: 2 LELNFKQQLGDLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRV 61
Query: 1325 -VDI-TKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQLGDLV 1381
D I L + R+G + QD LF VRGNL +Y + Q +V
Sbjct: 62 LFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNL----RYGMAKS----MVAQFDKIV 113
Query: 1382 R--AKEEKLD---STVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD 1430
E LD ++ S G++Q +GR LL +L++DE AS+D
Sbjct: 114 ALLGIEPLLDRYPGSL-------SGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-07
Identities = 66/286 (23%), Positives = 118/286 (41%), Gaps = 61/286 (21%)
Query: 1262 ISFHNLQIRYAEHLPSVLK---NISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMG 1318
I N+ + + LP+ LK N+S + + ++G+TGSGK+T I+ + ++ P G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 1319 SIII---DNVDITKIGLH---------------------DLRSRLGIIPQ--DPTLFDGT 1352
+I D + K ++R R+G++ Q + LF+ T
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 1353 VRGNL--DPLVQYSDKQVWEALDKC-QLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCL 1409
+ ++ P+ K+ EA + + +LV E L + S GQ++ L
Sbjct: 123 IEKDIIFGPVSMGVSKE--EAKKRAAKYIELVGLDESYLQ----RSPFELSGGQKRRVAL 176
Query: 1410 GRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKD-RTVVTIAHRIHTVID-SDLVL 1467
L + LV DE TA +D I +I K +T++ + H + V++ + +
Sbjct: 177 AGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236
Query: 1468 VLSDGRIAE----YD-------------SPTKLLEREDSFFSQLIK 1496
DG+I + YD P KLL +F ++L K
Sbjct: 237 FFKDGKIIKDGDTYDILSDNKFLIENNMEPPKLL----NFVNKLEK 278
|
Length = 305 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 48/219 (21%), Positives = 87/219 (39%), Gaps = 50/219 (22%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG------TKAYVP 701
L + + +G V + G G+GKS+LL I GE + G + ++G +P
Sbjct: 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75
Query: 702 ----------QSPWILTG-NIRENILFGNQ---YDSCKYDRTVEACALVKDFELFASGDL 747
Q +L + EN+ + + R V L DL
Sbjct: 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSE-VL----------DL 124
Query: 748 TEIGERG----INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI 803
+ + +SGG++QR+ IARA+ + L D+P +D + +M +
Sbjct: 125 VGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWE-----IMRL 179
Query: 804 LKD-----KSVLYVTHQVEFLPAADI---ILVMENGRIA 834
++ +VL TH +E + + +L +E+GR+
Sbjct: 180 FEEINRLGTTVLMATHDLELV--NRMRHRVLALEDGRLV 216
|
Length = 223 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 26/215 (12%)
Query: 649 TLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV-------------KISG 695
TL + + +G +I G GSGKS++ ++G + +G + K+
Sbjct: 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRK 83
Query: 696 TKAYVPQSP--WILTGNIRENILFGNQYDSCKYDRTVEACALV-KDFELFASGDLTEIGE 752
V Q+P + ++ ++ FG + + YD + K ++ D
Sbjct: 84 HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----Y 138
Query: 753 RGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK---DKSV 809
+SGGQKQR+ IA + + + +LD+ S +D L L+ +K + ++
Sbjct: 139 EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLD--LVRKVKSEHNITI 196
Query: 810 LYVTHQVEFLPAADIILVMENGRIAQAGRFEELLK 844
+ +TH + AD ++VM G + + G E+
Sbjct: 197 ISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231
|
Length = 269 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 2e-07
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I NL Y L +LK+IS T ++G+VGR G+GKSTL++ I +EP G +
Sbjct: 1 IELENLSKTYGGKL--LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 1322 IDNVDITKIG 1331
+ KIG
Sbjct: 59 WGST--VKIG 66
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 42/171 (24%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCI-----LGEIQKMAGTVKISGTKAYVP--- 701
L + L + A G G GKS+ L C+ + ++ G + + G Y P
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 702 ------------QSPWILTGNIRENILFG--------NQYDSCKYDRTVEACALVKDFEL 741
Q P +I EN+ +G ++ + D VE +L K
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAE---LDEIVET-SLRK---- 146
Query: 742 FASGDLTEIGER----GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVD 788
+G E+ +R G +SGGQ+QR+ IARA+ ++ L+D+P SA+D
Sbjct: 147 --AGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195
|
Length = 267 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 2e-07
Identities = 48/200 (24%), Positives = 89/200 (44%), Gaps = 28/200 (14%)
Query: 1287 PGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDP 1346
GR VG +G G+GKST ++ I + P GS+ + D+ + +++ +G +P+
Sbjct: 27 KGRI-VGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPK-EVQRNIGYLPEHN 84
Query: 1347 TL-----------FDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAEN 1395
L F + G L++ ++V E ++ L + +K+
Sbjct: 85 PLYLDMYVREYLQFIAGIYGMKGQLLK---QRVEEMIELVGLR---PEQHKKIGQL---- 134
Query: 1396 GENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAH 1455
S G RQ L + L+ +L+LDE T +D I+ +I KD+T++ H
Sbjct: 135 ----SKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTH 190
Query: 1456 RIHTV-IDSDLVLVLSDGRI 1474
+ V D V++++ G+I
Sbjct: 191 IMQEVEAICDRVIIINKGKI 210
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 33/160 (20%)
Query: 645 SSSPTLDGIQLKV-----KRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAY 699
+ TL L+V + I G G GK++ I+ +AG +K
Sbjct: 5 TMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTF-------IKMLAGVLKPDEGDIE 57
Query: 700 VPQSPWILTGNIRENILFGNQYDSCKYDRTVEA--CALVKDF--------ELFASGDLTE 749
+ + + + QY Y+ TV ++ KDF E+ + +
Sbjct: 58 IE----------LDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQ 107
Query: 750 IGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVD 788
I +R + +SGG+ QR+ IA + +DADIYLLD+P + +D
Sbjct: 108 ILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-07
Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 26/208 (12%)
Query: 598 QGKVSADRIAAY---LQEDEIQRDAVE--YVPKGR----SEFEVEVVNGKFSWNPESSSP 648
Q K A R+A Y L ++ +R+ Y+P G E E ++ F
Sbjct: 283 QAKSKA-RLARYEELLSQEFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFG-----DKL 336
Query: 649 TLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK--AYVPQSPWI 706
+D + K+ G V + G G+GKS+L I G+ Q +GT+KI T AYV QS
Sbjct: 337 LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDA 396
Query: 707 LTGN--IRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTE-IGERGINMSGGQKQ 763
L N + E I G R V + A V F F D + +G+ +SGG++
Sbjct: 397 LDPNKTVWEEISGGLDIIQLG-KREVPSRAYVGRFN-FKGSDQQKKVGQ----LSGGERN 450
Query: 764 RIQIARAVYQDADIYLLDDPFSAVDAHT 791
R+ +A+ + ++ LLD+P + +D T
Sbjct: 451 RVHLAKTLKSGGNVLLLDEPTNDLDVET 478
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 59/224 (26%), Positives = 96/224 (42%), Gaps = 55/224 (24%)
Query: 660 GMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK---------------------- 697
G + I G GSGK++LL CI G + AGTV
Sbjct: 32 GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEW 91
Query: 698 AYVPQSPW-------ILTGNIRENIL------FGNQYDSCKYDRTVEACALVKDFELFAS 744
+V Q+P GNI E ++ +GN EA +++ E+
Sbjct: 92 GFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRA--------EAQDWLEEVEI--- 140
Query: 745 GDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL 804
DL I + SGG +QR+QIAR + + +D+P +D +L D L G++
Sbjct: 141 -DLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLLRGLV 198
Query: 805 KDK--SVLYVTHQ---VEFLPAADIILVMENGRIAQAGRFEELL 843
++ +V+ VTH L AD ++VM+ G++ ++G + +L
Sbjct: 199 RELGLAVVIVTHDLAVARLL--ADRLMVMKQGQVVESGLTDRVL 240
|
Length = 258 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-07
Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 51/208 (24%)
Query: 606 IAAYLQ---EDE---IQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVK- 658
I YL+ +E + + +E+ K + + + + T +L+V+
Sbjct: 306 INEYLKGYLPEENVRFRPEEIEFEEKPPRDDKAR--DTLVEYP--DLKKTYGDFKLEVEE 361
Query: 659 ----RGMKVAICGTVGSGKSSLLSCILGEIQKMAG---TVKISGTKAYVPQSPWILTGNI 711
G + I G G GK++ + + G I+ G +K+S Y PQ
Sbjct: 362 GEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVS----YKPQ--------- 408
Query: 712 RENILFGNQYDSCKYDRTVEACALVKDFELFASG----------DLTEIGERGI-NMSGG 760
Y S YD TVE F S +L ++ ER + +SGG
Sbjct: 409 ---------YISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGG 459
Query: 761 QKQRIQIARAVYQDADIYLLDDPFSAVD 788
+ QR+ IA A+ ++AD+YLLD+P + +D
Sbjct: 460 ELQRVAIAAALSREADLYLLDEPSAYLD 487
|
Length = 591 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 62/252 (24%), Positives = 106/252 (42%), Gaps = 54/252 (21%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I F N+ + VL NI + V ++G +GSGKSTL++ I ++ E T G +I
Sbjct: 2 IEFKNVSKHFGPT--QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
Query: 1322 IDNVDIT--KIGLHDLRSRLGIIPQDPTLFDGT------------VRGNLDPLVQYSDKQ 1367
+D + + K+ +R G++ Q LF VRG + ++KQ
Sbjct: 60 VDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASK---EEAEKQ 116
Query: 1368 VWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATA 1427
E L K L E+ +E S GQ+Q + R L K +++ DE T+
Sbjct: 117 ARELLAKVGL-------AERAHHYPSE----LSGGQQQRVAIARALAVKPKLMLFDEPTS 165
Query: 1428 SVDS-------------ATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRI 1474
++D A +G+ I++ E + A ++ + + + + GRI
Sbjct: 166 ALDPELRHEVLKVMQDLAEEGMTMVIVTHE------IGFAEKVASRL-----IFIDKGRI 214
Query: 1475 AEYDSPTKLLER 1486
AE P L++
Sbjct: 215 AEDGDPQVLIKN 226
|
Length = 240 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 29/190 (15%)
Query: 652 GIQLKVKRGMKVAICGTVGSGKSSLLSCI-----LGEIQKMAGTVKISGTKAYVP----- 701
+ L V+RG A+ G G GK++ L I L ++ G + + G Y P
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 702 ----------QSPWIL-TGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEI 750
Q P T ++ +N++ G + + DR + V + L + E+
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIR-DR--DHLMEVAERSLRGAALWDEV 138
Query: 751 GER----GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD 806
+R +SGGQ+QR+ IARA+ + +I L+D+P SA+D + T +D + + K
Sbjct: 139 KDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAS-TARIEDLMTDLKKV 197
Query: 807 KSVLYVTHQV 816
+++ VTH +
Sbjct: 198 TTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 60/265 (22%), Positives = 112/265 (42%), Gaps = 54/265 (20%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLI--------------QAIFRI--------VEP 1315
VLKNIS T + +G++GR+G+GKS L+ + I+ + VE
Sbjct: 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74
Query: 1316 -------------TMGSIIIDNVDITKIGLHDLRSRLGIIPQ-------DPTLFDGTVRG 1355
T+ +D +++ +R R+ I+ Q D T+ D +
Sbjct: 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEA 134
Query: 1356 NLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLK 1415
L+ + + V A+D L ++V +L + + S G++Q L R L K
Sbjct: 135 -LEEIGYEGKEAVGRAVD---LIEMV-----QLSHRITHIARDLSGGEKQRVVLARQLAK 185
Query: 1416 KSSILVLDEATASVDSATDGVIQKIISQEFKDR--TVVTIAHRIHTVID-SDLVLVLSDG 1472
+ + + DE T ++D T ++ + + K ++V +H + D SD + L +G
Sbjct: 186 EPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENG 245
Query: 1473 RIAEYDSPTKLLEREDSFFSQLIKE 1497
I E +P +++ S++ KE
Sbjct: 246 EIKEEGTPDEVVAVFMEGVSEVEKE 270
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 3e-07
Identities = 29/98 (29%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 751 GERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--KS 808
G+ +++SGGQ+QR+ IARA+ + ++ L D+P SA+D ++ + +M L + K+
Sbjct: 147 GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR--IMQQLAEEGKT 204
Query: 809 VLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELLKQ 845
++ VTH++ F + ++ + G+I + G E+L
Sbjct: 205 MVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242
|
Length = 257 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 43/204 (21%)
Query: 1277 SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIII----DNVDITKIGL 1332
VLKN+S T + V + G +G+GKSTL+++++ P G I++ VD+ +
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 1333 HD---LRSR--------LGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLV 1381
+ +R + L +IP+ L +V + + +
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVSAL----------EVVAEPLLERGVPREAAR----A 127
Query: 1382 RAKE--------EKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT 1433
RA+E E+L + +S G++Q + R + IL+LDE TAS+D+A
Sbjct: 128 RARELLARLNIPERLWH-LPPA--TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAAN 184
Query: 1434 DGVIQKIISQEFKDR--TVVTIAH 1455
V+ ++I E K R ++ I H
Sbjct: 185 RQVVVELI-AEAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 61/213 (28%), Positives = 99/213 (46%), Gaps = 43/213 (20%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
L G++L VKRG +A+ G GSGKS+LL+ + G +G V + G
Sbjct: 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85
Query: 698 -----AYVPQS-PWILTGNIRENI-----LFGNQYDSCKYDRTVEACALVKDFELFASGD 746
+V QS I T N EN+ L G +S + R A AL++ L
Sbjct: 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRN-GAKALLEQLGL----- 136
Query: 747 LTEIGERGINM----SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMG 802
G+R ++ SGG++QR+ +ARA D+ D+P +D TG ++ D L
Sbjct: 137 ----GKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKI-ADLLFS 191
Query: 803 ILKD--KSVLYVTHQVEFLPAADIILVMENGRI 833
+ ++ +++ VTH ++ D L + NG++
Sbjct: 192 LNREHGTTLILVTHDLQLAARCDRRLRLVNGQL 224
|
Length = 228 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 3e-07
Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 60/225 (26%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKIS--GTKAYVPQSP- 704
P + L ++ G ++AI G G GK++LL ++GE++ +GTVK S Y Q
Sbjct: 333 PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHA 392
Query: 705 -----------WILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGER 753
W+ +Q+ D L + L S D +I +
Sbjct: 393 YDFENDLTLFDWM------------SQWRQEGDDEQAVRGTLGR---LLFSQD--DIKKS 435
Query: 754 GINMSGGQKQRIQIARAVYQDADIYLLDDPF------------SAVDAHTGTQLFKDCLM 801
+SGG+K R+ + + Q ++ ++D+P A++ + GT +F
Sbjct: 436 VKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIF----- 490
Query: 802 GILKDKSVLYVTHQVEFLP--AADIILVMENGRIAQAGRFEELLK 844
V+H EF+ A II + +G + +G +EE L+
Sbjct: 491 ----------VSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525
|
Length = 530 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 3e-07
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 32/210 (15%)
Query: 1286 FPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII-----IDNVDITKIGLHDLRSRLG 1340
+PG + + +VG +GSGKST +A+ R+VE G II ID + K L LR +
Sbjct: 348 WPG-ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGK--LQALRRDIQ 404
Query: 1341 IIPQDPTLFDGTVRGNLDP--LVQYSDKQVWEALDKCQL--GDLVRAKEEKLDSTVAENG 1396
I QDP +LDP V S + E L L G A+ L V
Sbjct: 405 FIFQDPY-------ASLDPRQTVGDS---IMEPLRVHGLLPGKAAAARVAWLLERVGLLP 454
Query: 1397 EN-------WSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRT 1449
E+ +S GQRQ C+ R L +++ DEA +++D + G I ++ +D
Sbjct: 455 EHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG 514
Query: 1450 V--VTIAHRIHTVID-SDLVLVLSDGRIAE 1476
+ + I+H + V S V V+ G+I E
Sbjct: 515 IAYLFISHDMAVVERISHRVAVMYLGQIVE 544
|
Length = 623 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 52/204 (25%), Positives = 102/204 (50%), Gaps = 23/204 (11%)
Query: 1279 LKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSR 1338
LK ++ T + + ++G +G GKSTL+ I + +PT G +I++ IT+ G +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM--- 57
Query: 1339 LGIIPQDPTLFDG-TVRGNL----DPLVQYSDKQVWEAL--DKCQLGDLVRAKEEKLDST 1391
++ Q+ +L TVR N+ D ++ K A+ + L L A +++
Sbjct: 58 --VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQL 115
Query: 1392 VAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDR--T 1449
S G +Q + R L + +L+LDE ++D+ T G +Q+ + Q +++ T
Sbjct: 116 --------SGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVT 167
Query: 1450 VVTIAHRI-HTVIDSDLVLVLSDG 1472
V+ + H + ++ SD V++L++G
Sbjct: 168 VLMVTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 5e-07
Identities = 48/211 (22%), Positives = 89/211 (42%), Gaps = 31/211 (14%)
Query: 1292 VGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQD------ 1345
+G++G G+GK+TL++AI ++ P G++ + K H +G +PQ
Sbjct: 9 LGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRH-----IGYVPQRHEFAWD 63
Query: 1346 -PTLFDGTV---RGNLDPLVQYSDKQVW----EALDKCQLGDLVRAKEEKLDSTVAENGE 1397
P TV R ++ + +AL + L +L D V E
Sbjct: 64 FPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELA-------DRPVGE--- 113
Query: 1398 NWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKD-RTVVTIAHR 1456
S GQRQ + R L + S+L+LDE +D T ++ ++ + ++ H
Sbjct: 114 -LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172
Query: 1457 IHTVIDSDLVLVLSDGRIAEYDSPTKLLERE 1487
+ + + +VL +GR+ +P +L +
Sbjct: 173 LAQAMATCDRVVLLNGRVIADGTPQQLQDPA 203
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 5e-07
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK---SVLYVT 813
+SGGQ+QR+ IA A+ + D+ + D+P +A+D Q+ L+ L+ + ++L++T
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD--LLKELQAELGMAILFIT 215
Query: 814 HQVEFLPA-ADIILVMENGRIAQAGRFEELL 843
H + + AD + VM++G I + G E L
Sbjct: 216 HDLGIVRKFADRVYVMQHGEIVETGTTETLF 246
|
Length = 534 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 29/93 (31%), Positives = 56/93 (60%), Gaps = 9/93 (9%)
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--KSVLYVTH 814
+SGGQ+QR+ IARA+ + ++ L D+P SA+D ++ K +M L + ++++ VTH
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK--VMQDLAEEGRTMVVVTH 210
Query: 815 QVEFLPAADI---ILVMENGRIAQAGRFEELLK 844
++ F A D+ ++ + G+I + G E++
Sbjct: 211 EMGF--ARDVSSHVIFLHQGKIEEEGPPEQVFG 241
|
Length = 256 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 5e-07
Identities = 61/212 (28%), Positives = 95/212 (44%), Gaps = 43/212 (20%)
Query: 1290 KKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDIT---KIGLHDLRSRLGIIPQDP 1346
K + VVG +G GKSTL + + I PT G + D+ LR ++ I+ Q+P
Sbjct: 42 KTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNP 101
Query: 1347 TLFDGTVRGNLDPLVQYSDKQVWEALDKCQL--GDLVRA-KEEKLDSTVAENG---ENW- 1399
G+L+P K+V + L++ L L A + EK + +A+ G E++
Sbjct: 102 Y-------GSLNP-----RKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYD 149
Query: 1400 ------SVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKII-------SQEFK 1446
S GQRQ + R L+ ++V DE SA D +Q + QE
Sbjct: 150 RYPHMFSGGQRQRIAIARALMLDPDVVVADEPV----SALDVSVQAQVLNLMMDLQQELG 205
Query: 1447 DRTVVTIAHRIHTV--IDSDLVLVLSDGRIAE 1476
+ V I+H + V I +D V+V+ GR E
Sbjct: 206 -LSYVFISHDLSVVEHI-ADEVMVMYLGRCVE 235
|
Length = 327 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 59/254 (23%), Positives = 111/254 (43%), Gaps = 46/254 (18%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPT----- 1316
I +L I Y +++++ R +G +G GKST+++ + R+ E
Sbjct: 5 IDVKDLNIYYGSFH--AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARV 62
Query: 1317 MGSIIIDNVDITKIGLH--DLRSRLGIIPQDP------TLFDGTVRG----------NLD 1358
G +++D D+ G+ +R +G++ Q P ++ D V G +LD
Sbjct: 63 EGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLD 122
Query: 1359 PLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSS 1418
LV+ S L L + V+ ++LD G S GQ+Q C+ R + +
Sbjct: 123 ELVEKS-------LRGANLWNEVK---DRLDKP----GGGLSGGQQQRLCIARAIAVEPD 168
Query: 1419 ILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHT---VIDS----DLVLVLSD 1471
+L++DE +++D + I+ +I++ +D T+V + H + V D +L
Sbjct: 169 VLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKP 228
Query: 1472 GRIAEYDSPTKLLE 1485
GR+ E D K+
Sbjct: 229 GRLVEIDDTEKIFS 242
|
Length = 258 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 26/123 (21%)
Query: 708 TGNIRENILFG----NQYDSCKYDRTVEACAL--------VKDFELFASGDLTEIGERGI 755
T +IR+N++ G + D VE +L VKD + + G
Sbjct: 99 TMSIRDNVVAGLKLNGVRNKKDLDELVEK-SLRGANLWNEVKD----------RLDKPGG 147
Query: 756 NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK-SVLYVTH 814
+SGGQ+QR+ IARA+ + D+ L+D+P SA+D T +D L+ LK +++ VTH
Sbjct: 148 GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDP-ISTLAIED-LINELKQDYTIVIVTH 205
Query: 815 QVE 817
++
Sbjct: 206 NMQ 208
|
Length = 258 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 6e-07
Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 47/218 (21%)
Query: 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCI-----LGEIQ 685
EVE +N F + L + L + + A+ G G GKS+ + + L
Sbjct: 5 EVENLNTYFD-----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGF 59
Query: 686 KMAGTVKISGTKAYVP---------------QSPWILTGNIRENILFG----NQYDSCKY 726
+ G + + G Y P Q P +I +N+ +G + D
Sbjct: 60 RHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFI 119
Query: 727 DRTVE----ACAL---VKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYL 779
+ VE A AL VKD ++ + + +SGGQ+QR+ IAR + ++ L
Sbjct: 120 EERVEESLKAAALWDEVKD----------KLDKSALGLSGGQQQRLCIARTIAVSPEVIL 169
Query: 780 LDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVE 817
+D+P SA+D + T++ +D + + +D +++ VTH ++
Sbjct: 170 MDEPCSALDPISTTKI-EDLIHKLKEDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 6e-07
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 753 RGINM--SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSV 809
R +N SGG+K+R +I + + + D+ +LD+P S +D +L + + + + KSV
Sbjct: 99 RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI-DALRLVAEVINKLREEGKSV 157
Query: 810 LYVTHQVEFL--PAADIILVMENGRIAQAGRFEELLK 844
L +TH L D + V+ +GRI ++G E L+
Sbjct: 158 LIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELALE 194
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 7e-07
Identities = 60/229 (26%), Positives = 107/229 (46%), Gaps = 38/229 (16%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQK--MAGTVKISGTK---------A 698
L+G+ G +A+ G GSGKS+LL+ + G IQ GT+ + K
Sbjct: 84 LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTG 143
Query: 699 YVPQSPWI---LTGNIRENILFGN----QYDSCKYDRTVEACALVKDFELFASGDLTEIG 751
+V Q + LT +RE ++F + K ++ + A +++ + L + T IG
Sbjct: 144 FVTQDDILYPHLT--VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN-TIIG 200
Query: 752 E---RGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKS 808
RGI SGG+++R+ IA + + + +LD+P S +DA +L K K+
Sbjct: 201 NSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKT 258
Query: 809 VLYVTHQVEFLPAA------DIILVMENGRIAQAGRFEELLK--QNIGF 849
++ HQ P++ D +LV+ GR G+ + + +++GF
Sbjct: 259 IVTSMHQ----PSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGF 303
|
Length = 659 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 8e-07
Identities = 44/185 (23%), Positives = 87/185 (47%), Gaps = 20/185 (10%)
Query: 1290 KKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNV-----DITKIGLHDL--RSRLGII 1342
+ G +G +G GKST+++++ R+ + G +V D+ G+ + R +G++
Sbjct: 35 EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMV 94
Query: 1343 PQDP-----TLFDGTVRG-NLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENG 1396
Q P ++FD G L+ +V AL L D V+ K + +G
Sbjct: 95 FQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-------LKVSG 147
Query: 1397 ENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHR 1456
+ S GQ+Q C+ R + + +L+LDE +++D +++++ + KD T+ + H
Sbjct: 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHN 207
Query: 1457 IHTVI 1461
+ I
Sbjct: 208 MQQAI 212
|
Length = 261 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 8e-07
Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 26/201 (12%)
Query: 1293 GVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG---LHDLRSRLGIIPQDP--T 1347
GVVG +G GKST +AI +V+ T G + D+ + +RS + +I QDP +
Sbjct: 51 GVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110
Query: 1348 LFDGTVRGNL--DPLVQYSDKQVWEALDKCQLGDLVRAKEEK---LDSTVAENGENWSVG 1402
L G + +PL Y K L + ++ D V+A K L + + +S G
Sbjct: 111 LNPRMTIGEIIAEPLRTYHPK-----LSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165
Query: 1403 QRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKD------RTVVTIAHR 1456
Q Q + R L+ + +++ DE SA D IQ + + +++ IAH
Sbjct: 166 QCQRIGIARALILEPKLIICDEPV----SALDVSIQAQVVNLLQQLQREMGLSLIFIAHD 221
Query: 1457 IHTVID-SDLVLVLSDGRIAE 1476
+ V SD VLV+ G E
Sbjct: 222 LAVVKHISDRVLVMYLGHAVE 242
|
Length = 331 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 9e-07
Identities = 52/197 (26%), Positives = 79/197 (40%), Gaps = 57/197 (28%)
Query: 1292 VGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI--IPQDPTLF 1349
VG+ G G+G++ L +A+F + P G I +D +T+ D R GI +P+D
Sbjct: 29 VGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAI-RAGIAYVPEDR-KR 86
Query: 1350 DGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAEN---GENWSVGQRQL 1406
+G V LD +VAEN S G +Q
Sbjct: 87 EGLV----------------------------------LDLSVAENIALSSLLSGGNQQK 112
Query: 1407 FCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDL- 1465
L R L + +L+LDE T VD I ++I +E D + +I S+L
Sbjct: 113 VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLI-RELADAGKAVL------LISSELD 165
Query: 1466 --------VLVLSDGRI 1474
+LV+ +GRI
Sbjct: 166 ELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 1e-06
Identities = 25/93 (26%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 752 ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLY 811
+++SGGQ+QR+ IAR + + LLD+P SA+D + ++ ++ + + ++ S++
Sbjct: 160 SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI-EELITELKEEYSIII 218
Query: 812 VTHQV-EFLPAADIILVMENGRIAQAGRFEELL 843
VTH + + L +D NG + + + E++
Sbjct: 219 VTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251
|
Length = 268 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 51/215 (23%), Positives = 92/215 (42%), Gaps = 43/215 (20%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT----------KAY 699
L+ + L +K G VA+ G G GKS+L ++G G V G KA+
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAF 87
Query: 700 ------VPQSP-----------WILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELF 742
V Q I+ +R + K +R A +++ +L
Sbjct: 88 RRDIQMVFQDSISAVNPRKTVREIIREPLR------HLLSLDKAERLARASEMLRAVDL- 140
Query: 743 ASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMG 802
D + + +R +SGGQ QR+ +ARA+ + + +LD+ S +D + + L+
Sbjct: 141 ---DDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR--LLK 195
Query: 803 ILKDKS---VLYVTHQVEFLPA-ADIILVMENGRI 833
L+ + L++TH + + ++VM+NG+I
Sbjct: 196 KLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
Length = 268 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-06
Identities = 68/291 (23%), Positives = 128/291 (43%), Gaps = 64/291 (21%)
Query: 586 IFNLPDLLSNIAQGKVSADRIAAYLQEDEI------QRDAVEY----VPKGRSEFEVEVV 635
IF + D ++ G+ A+R A L ED + ++ +Y G +V+ +
Sbjct: 204 IFEICDDVTVFRDGQFIAEREVADLTEDSLIEMMVGRKLEDQYPRLDKAPGEVRLKVDNL 263
Query: 636 NGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG 695
+G P ++ + +++G + + G +G+G++ L+ + G + + +G V + G
Sbjct: 264 SG----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDG 313
Query: 696 TKAYVPQSP-------------------WILTGNIRENI------LFGNQYDSCKYDRTV 730
V +SP +L +++EN+ F S K+
Sbjct: 314 -HEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQ 372
Query: 731 EACALVKDF-ELF----ASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFS 785
+A V DF LF S + IG +SGG +Q++ IAR + + +LD+P
Sbjct: 373 QA---VSDFIRLFNIKTPSMEQA-IG----LLSGGNQQKVAIARGLMTRPKVLILDEPTR 424
Query: 786 AVDAHTGTQLFKDCLMGILKDK--SVLYVTHQV-EFLPAADIILVMENGRI 833
VD ++++ L+ K + S++ V+ ++ E L +D ILVM GRI
Sbjct: 425 GVDVGAKKEIYQ--LINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 48/220 (21%), Positives = 104/220 (47%), Gaps = 21/220 (9%)
Query: 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSI 1320
+ + + + + NIS P + G++G G+GK+T + I ++EPT G I
Sbjct: 2 ALEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI 59
Query: 1321 IIDNVDITKIGLHDLRSRLGIIPQDPTLF-DGTVRGNLDPLVQYSD-KQVWEALDKCQLG 1378
+ +++ +++R+G +P++ L+ TV D L ++ K + +A + +L
Sbjct: 60 TWNGGPLSQE----IKNRIGYLPEERGLYPKMTV---EDQLKYLAELKGMPKAEIQKKLQ 112
Query: 1379 DLVRAKEEKLDSTVAENG--ENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGV 1436
+ E+L+ + + S G +Q ++ + +L+LDE + +D +
Sbjct: 113 AWL----ERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVEL 168
Query: 1437 IQKIISQEFKDR--TVVTIAHRIHTVID-SDLVLVLSDGR 1473
++ I E K+ T++ +HR+ V + D +L+L G+
Sbjct: 169 LKDAI-FELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQ 207
|
Length = 300 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 1e-06
Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 9/205 (4%)
Query: 1282 ISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341
++ TF + +G G+GK+T + + ++ PT G++++ DI + L +R LG+
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAVRQSLGM 1007
Query: 1342 IPQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWS 1400
PQ LF TV ++ Q + WE + QL ++ L E ++ S
Sbjct: 1008 CPQHNILFHHLTVAEHILFYAQLKGRS-WE---EAQLEMEAMLEDTGLHHKRNEEAQDLS 1063
Query: 1401 VGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTV 1460
G ++ + + + ++VLDE T+ VD + I ++ + RT++ H +
Sbjct: 1064 GGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEA 1123
Query: 1461 -IDSDLVLVLSDGRIAEYDSPTKLL 1484
+ D + ++S GR+ Y S T L
Sbjct: 1124 DLLGDRIAIISQGRL--YCSGTPLF 1146
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 19/207 (9%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
L++I+ T + + V+G +G GK+TL+ I V GSI +D + G +
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPG-----A 70
Query: 1338 RLGIIPQDPTLFD-GTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENG 1396
G++ Q+ L V+ N+ +Q + ++K Q ++ +K+ AE
Sbjct: 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLA------GVEKMQRLEIAHQMLKKVGLEGAEKR 124
Query: 1397 ENW--SVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKD--RTVVT 1452
W S GQRQ + R L +L+LDE ++D+ T +Q ++ + +++ + V+
Sbjct: 125 YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLL 184
Query: 1453 IAHRIHTVI--DSDLVLVLSD-GRIAE 1476
I H I + ++LVL+ GR+ E
Sbjct: 185 ITHDIEEAVFMATELVLLSPGPGRVVE 211
|
Length = 255 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 49/219 (22%), Positives = 93/219 (42%), Gaps = 29/219 (13%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709
L I +K+ I G GSGKS+LL + I+ +K+ G Y + + +
Sbjct: 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85
Query: 710 --------------------NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTE 749
+I +NI + + K R ++ + + L G E
Sbjct: 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKK---IVEECLRKVGLWKE 142
Query: 750 IGER----GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK 805
+ +R +SGGQ+QR+ IARA+ + L+D+P S +D +Q + + +
Sbjct: 143 VYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDI-VNSQAIEKLITELKN 201
Query: 806 DKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELL 843
+ +++ V+H + + AD + + NG + + G E+
Sbjct: 202 EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240
|
Length = 257 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-06
Identities = 45/195 (23%), Positives = 90/195 (46%), Gaps = 12/195 (6%)
Query: 1292 VGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI--IPQDP--- 1346
VG+ G G+G+S L++AI + +P G I+++ D+ R RLG+ +P+D
Sbjct: 287 VGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGH 346
Query: 1347 -TLFDGTVRGNLDPLVQYSDKQV-WEALDKCQLGDLVRAKEEKLD---STVAENGENWSV 1401
+ D ++ NL LD+ + R E+ D + + S
Sbjct: 347 GLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSG 406
Query: 1402 GQRQLFCLGRTLLKKSSILVLDEATASVD-SATDGVIQKIISQEFKDRTVVTIAHRIHTV 1460
G +Q L R L ++ +L+ + T +D A + + ++++ + V+ I+ + +
Sbjct: 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEI 466
Query: 1461 ID-SDLVLVLSDGRI 1474
++ SD + V+ +GRI
Sbjct: 467 LELSDRIAVIYEGRI 481
|
Length = 501 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 48/195 (24%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I NL + + +LK++S ++ + G +G+GKS+L +A+ + G I
Sbjct: 1 IELENLSLATPDGRV-LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG 59
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLV 1381
+ L +PQ P L GT+R E L +
Sbjct: 60 MP-----------EGEDLLFLPQRPYLPLGTLR---------------EQL--------I 85
Query: 1382 RAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKII 1441
++ L S G++Q R LL K + LDEAT+++D ++ + +++
Sbjct: 86 YPWDDVL-----------SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL 134
Query: 1442 SQEFKDRTVVTIAHR 1456
+ TV+++ HR
Sbjct: 135 KELGI--TVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-06
Identities = 53/215 (24%), Positives = 104/215 (48%), Gaps = 24/215 (11%)
Query: 1279 LKNISCTFPGRKKV-------------GVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNV 1325
+ NIS +FPG K + ++G G+GKSTL++ +F I + GSI+
Sbjct: 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGK 60
Query: 1326 DIT-KIGLHDLRSRLGIIPQDPTLF-DGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRA 1383
+I K L + + ++ Q+ L +V N+ L +Y K ++ +D+ ++ +A
Sbjct: 61 EIDFKSSKEALENGISMVHQELNLVLQRSVMDNM-WLGRYPTKGMF--VDQDKMYRDTKA 117
Query: 1384 KEEKLDSTV--AENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKII 1441
++LD + SV Q Q+ + + + I+++DE T+S+ + II
Sbjct: 118 IFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTII 177
Query: 1442 SQEFKDR--TVVTIAHRIHTVID-SDLVLVLSDGR 1473
++ K+R +V I+H++ + D + +L DG+
Sbjct: 178 -RKLKERGCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 54/267 (20%), Positives = 108/267 (40%), Gaps = 50/267 (18%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709
+D I +V G + G G+GK++ ILG ++ G + +G L+
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGP---------LSQ 68
Query: 710 NIRENI--------LFGNQ--YDSCKY----------DRTVEACALVKDFEL-FASGDLT 748
I+ I L+ D KY + + A ++ E+
Sbjct: 69 EIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKI 128
Query: 749 EIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD-- 806
+ +S G +Q+IQ AV + ++ +LD+PFS +D +L KD + LK+
Sbjct: 129 K------ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDP-VNVELLKDAIFE-LKEEG 180
Query: 807 KSVLYVTHQ---VEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLV-GAHS----Q 858
++++ +H+ VE L D +L+++ G+ G E++ + +++ S
Sbjct: 181 ATIIFSSHRMEHVEEL--CDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIESDLSLEELA 238
Query: 859 ALESVLTVETSSRTSQDPTPESELNSD 885
+ +L + + S E+E +
Sbjct: 239 NIPGILKITETKDGSWRIQIENETVAR 265
|
Length = 300 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 2e-06
Identities = 50/211 (23%), Positives = 98/211 (46%), Gaps = 27/211 (12%)
Query: 645 SSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--------- 695
S P +D + + A G G+GK++ LS + G + +GTV + G
Sbjct: 941 SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDA 1000
Query: 696 ---TKAYVPQSPWILTG-NIRENILFGNQYDSCKYDRT-VEACALVKDFELFASGDLTEI 750
+ PQ + + E+ILF Q ++ +E A+++D +G +
Sbjct: 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLED-----TGLHHKR 1055
Query: 751 GERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVL 810
E ++SGG ++++ +A A DA + +LD+P S VD ++ ++ D L+ ++++
Sbjct: 1056 NEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIW-DLLLKYRSGRTII 1114
Query: 811 YVTHQVEFLPAADI----ILVMENGRIAQAG 837
TH ++ AD+ I ++ GR+ +G
Sbjct: 1115 MSTHHMD---EADLLGDRIAIISQGRLYCSG 1142
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 2e-06
Identities = 34/183 (18%), Positives = 60/183 (32%), Gaps = 50/183 (27%)
Query: 662 KVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQY 721
+ I G GSGK++L + E+ G V I +I E +L
Sbjct: 4 VILIVGPPGSGKTTLARALARELGPPGGGVIY------------IDGEDILEEVLDQLL- 50
Query: 722 DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLD 781
L +G + + SG + R+ +A A D+ +LD
Sbjct: 51 -------------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILD 85
Query: 782 DPFSAVDAHTGTQLFKDCLMGILK------DKSVLYVTHQVEFL------PAADIILVME 829
+ S +DA L + +L + +V+ T+ + L D +V+
Sbjct: 86 EITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLL 145
Query: 830 NGR 832
Sbjct: 146 LIL 148
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 27/203 (13%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
L + L + +G V + G G+GK++LL + G+ + +G + G
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80
Query: 698 --AYVPQSPWILTG-NIRENILFGNQY-DSCKYDRTVEACALVKDFELFASGDLTE-IGE 752
A VP+ + + + EN+ G + + ++ ++ +ELF L E +
Sbjct: 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK-----WVYELFPR--LHERRIQ 133
Query: 753 RGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYV 812
R MSGG++Q + I RA+ + LLD+P + Q+F D + + + +++
Sbjct: 134 RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIF-DTIEQLREQGMTIFL 192
Query: 813 THQ--VEFLPAADIILVMENGRI 833
Q + L AD V+ENG +
Sbjct: 193 VEQNANQALKLADRGYVLENGHV 215
|
Length = 237 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 58/212 (27%), Positives = 97/212 (45%), Gaps = 21/212 (9%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSI-IIDNVDITKIGLHDLR 1336
LK IS T + VG +G G+GK+T ++ + +++PT G + + V +
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKF--L 93
Query: 1337 SRLGII-PQDPTL-FDGTVRGNLDPL---VQYSDKQVWEALDK-CQLGDLVRAKEEKLDS 1390
R+G++ Q L +D V + L + + LD+ +L DL EE LD+
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDL----EELLDT 149
Query: 1391 TVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDR-- 1448
V S+GQR + LL + IL LDE T +D I+ + + ++R
Sbjct: 150 PV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGT 205
Query: 1449 TVVTIAHRIHTVID-SDLVLVLSDGRIAEYDS 1479
TV+ +H + + + VLV+ GR+ YD
Sbjct: 206 TVLLTSHYMKDIEALARRVLVIDKGRLL-YDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 3e-06
Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 27/219 (12%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL-- 1335
VLK IS + V +VG +GSGKSTL+ + + +PT G+ + D+ + L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 1336 --RSRLGIIPQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQ-------LGDLVRAKE 1385
R G I Q L T N++ Y+ + + L + Q L D V +
Sbjct: 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP 142
Query: 1386 EKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF 1445
+L S GQ+Q + R L+ +++ DE T ++DS + + I+ Q
Sbjct: 143 SQL-----------SGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQ-L 190
Query: 1446 KDR--TVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTK 1482
+DR TV+ + H ++ V+ + DG I + P +
Sbjct: 191 RDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVR-NPPAQ 228
|
Length = 648 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 3e-06
Identities = 63/248 (25%), Positives = 104/248 (41%), Gaps = 32/248 (12%)
Query: 622 YVPKGRSEFEVEVVNG---KFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLS 678
VP S+ + V F E+ L+ I ++ I G GSGKS+L++
Sbjct: 11 KVPNPLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVT 70
Query: 679 CILGEIQKMAGTVKI----SGTK-AYVPQSPWILTGNI------RENILFGNQY------ 721
G I+ GT+++ G K + I R + Q+
Sbjct: 71 HFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF 130
Query: 722 -DSCKYDRTVEACAL-VKDFEL--FASGDLTEIG------ERG-INMSGGQKQRIQIARA 770
D+ + D AL VK E A L ++G ER +SGGQK+R+ IA
Sbjct: 131 KDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGI 190
Query: 771 VYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVE-FLPAADIILVME 829
+ +I + D+P + +D ++ + L +K+V +TH +E L AD ++VM+
Sbjct: 191 LAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMD 250
Query: 830 NGRIAQAG 837
G+I + G
Sbjct: 251 KGKILKTG 258
|
Length = 320 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-06
Identities = 60/213 (28%), Positives = 92/213 (43%), Gaps = 51/213 (23%)
Query: 1278 VLKNISCTF-PGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLR 1336
+LK+IS +F PG K+GV+G G+GKSTL++ I+ VD G
Sbjct: 20 ILKDISLSFFPG-AKIGVLGLNGAGKSTLLR-------------IMAGVDKEFNGEARPA 65
Query: 1337 S--RLGIIPQDPTLFDG-TVRGN-----------LDPLVQYSDKQVWEALDKCQLGDLVR 1382
++G +PQ+P L TVR N LD + S K D L
Sbjct: 66 PGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQA 125
Query: 1383 AKEEKLDSTVAENGEN-------------W-------SVGQRQLFCLGRTLLKKSSILVL 1422
+E +D+ A + + W S G+R+ L R LL K +L+L
Sbjct: 126 ELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLL 185
Query: 1423 DEATASVDSATDGVIQKIISQEFKDRTVVTIAH 1455
DE T +D+ + +++ + QE+ TVV + H
Sbjct: 186 DEPTNHLDAESVAWLEQHL-QEYPG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 3e-06
Identities = 60/267 (22%), Positives = 108/267 (40%), Gaps = 49/267 (18%)
Query: 1262 ISFHNLQIRYAEH-------LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE 1314
++ L YA +VL N+S + + V ++GR+G GKSTL + + +
Sbjct: 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES 63
Query: 1315 PTMGSIIIDNVDITKI---GLHDLRSRLGIIPQD-PTLFD--GTVRGNLD-PLVQYSDKQ 1367
P+ G++ + K+ R + ++ QD + + TVR + PL
Sbjct: 64 PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLD 123
Query: 1368 VWEALDKCQLGDLVRAKEEKLDSTVAEN-GENWSVGQRQLFCLGRTLLKKSSILVLDEAT 1426
+A + +++RA + LD +V + S GQ Q CL R L + +L+LDEA
Sbjct: 124 --KAERLARASEMLRAVD--LDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAV 179
Query: 1427 ASVDSATDGVIQKIISQEFKD----------------RTVVTIAHRIHTVIDSDLVLVLS 1470
+++D V+Q + + K R V R V+V+
Sbjct: 180 SNLDL----VLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQR---------VMVMD 226
Query: 1471 DGRIAEYDSPTKLLEREDSFFSQLIKE 1497
+G+I E P S ++++
Sbjct: 227 NGQIVE-TQPVGDKLTFSSPAGRVLQN 252
|
Length = 268 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 28/219 (12%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIF--RIVEPTMGSIIIDNVDITKIGLHDL 1335
+LK ++ T + ++G GSGKSTL + I E T G+I+ D+ ++ D
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL-EPDE 73
Query: 1336 RSRLGII--PQDPTLFDGT-----VRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKL 1388
R+R G+ Q P G +R L+ + E LD L++AK L
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGE---EPLDLLDFLKLLKAKLALL 130
Query: 1389 --DSTVAENGEN--WSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIIS-- 1442
D N +S G+++ + + L + + +LDE +DS D KI++
Sbjct: 131 GMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDE----IDSGLDIDALKIVAEG 186
Query: 1443 -QEFK--DRTVVTIAH--RIHTVIDSDLVLVLSDGRIAE 1476
+ DR+ + I H R+ I D V VL DGRI +
Sbjct: 187 INRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK 225
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 4e-06
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 12/93 (12%)
Query: 756 NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQ----LFKDC--LMGILKDKSV 809
+SGGQKQR+ IARA+ + + L D+ SA+D T T+ L KD +G+ ++
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT-TRSILELLKDINRELGL----TI 194
Query: 810 LYVTHQVEFLPA-ADIILVMENGRIAQAGRFEE 841
+ +TH+++ + D + V++ GR+ + G E
Sbjct: 195 VLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE 227
|
Length = 343 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 54/221 (24%), Positives = 90/221 (40%), Gaps = 36/221 (16%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV------KISGTKAYVP-- 701
L+ + V G + G G+GK++L+ I G+ + G V ++ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 702 -------QSPWILTG-NIRENILFGNQYD-----SCKYDRTVEACALVKDFELFASGDLT 748
Q P + +REN+ D S E + EL A+ L
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRID--ELLATIGLG 138
Query: 749 EIGERGI---NMSGGQKQRIQIARAVYQDADIYLLDDPFSAV-DAHTG--TQLFKDCLMG 802
+ ER +S GQKQ ++I + QD + LLD+P + + DA T +L K
Sbjct: 139 D--ERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS---- 192
Query: 803 ILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEEL 842
+ S+L V H + F+ AD + V+ G + G +E+
Sbjct: 193 LAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEV 233
|
Length = 249 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 4e-06
Identities = 55/217 (25%), Positives = 100/217 (46%), Gaps = 16/217 (7%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSI-IIDNVDITKIGLHDLR 1336
V+ ++S T + G++G G+GKST+ + + ++ P G I ++ ++ L R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARL--AR 76
Query: 1337 SRLGIIPQDPTL-FDGTVRGNLDPLVQY---SDKQVWEALDKCQLGDLVRAKEEKLDSTV 1392
+G++PQ L + TVR NL +Y S +++ + L + R E K D V
Sbjct: 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP--SLLEFARL-ESKADVRV 133
Query: 1393 AENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVI-QKIISQEFKDRTVV 1451
A S G ++ L R L+ +L+LDE T +D +I +++ S + +T++
Sbjct: 134 AL----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTIL 189
Query: 1452 TIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE 1487
H + D + VL GR P L++ +
Sbjct: 190 LTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQ 226
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 52/233 (22%), Positives = 102/233 (43%), Gaps = 17/233 (7%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+SF + Y + L +S + V ++G G+GK+TL+ + T G I+
Sbjct: 6 LSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIV 63
Query: 1322 IDNVDITKIGLHD-LRSRLGIIPQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQLGD 1379
D DIT +R + I+P+ +F TV NL ++++ ++ K
Sbjct: 64 FDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYEL 123
Query: 1380 LVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQK 1439
R E + + S G++Q+ +GR L+ + +L+LDE + + +IQ+
Sbjct: 124 FPRLHERR-----IQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPI---IIQQ 175
Query: 1440 IIS--QEFKDR--TVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE 1487
I ++ +++ T+ + + + +D VL +G + D+ LL E
Sbjct: 176 IFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANE 228
|
Length = 237 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 6e-06
Identities = 60/219 (27%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
VL +IS P + V ++G +GSGK+TL++ I + T G I D+++ LH
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSR--LHARDR 74
Query: 1338 RLGIIPQDPTLFDG-TVRGNLD-----------PLVQYSDKQVWEALDKCQLGDLVRAKE 1385
++G + Q LF TV N+ P +V + L+ QL L
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP 134
Query: 1386 EKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQ-- 1443
+L S GQ+Q L R L + IL+LDE ++D+ +++ + Q
Sbjct: 135 AQL-----------SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLH 183
Query: 1444 -EFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSP 1480
E K T V + H ++ +D V+V+S G I + +P
Sbjct: 184 EELK-FTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTP 221
|
Length = 353 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 6e-06
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 12/142 (8%)
Query: 1293 GVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTL-FDG 1351
G++G G+GKST+ + I + P G I + V + R+R+G++PQ L +
Sbjct: 71 GLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIGVVPQFDNLDLEF 129
Query: 1352 TVRGNLDPLVQY---SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFC 1408
TVR NL +Y S +++ + L + R E K D+ V++ S G ++
Sbjct: 130 TVRENLLVFGRYFGMSTREIEAVIP--SLLEFARL-ESKADARVSD----LSGGMKRRLT 182
Query: 1409 LGRTLLKKSSILVLDEATASVD 1430
L R L+ +L+LDE T +D
Sbjct: 183 LARALINDPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 6e-06
Identities = 58/229 (25%), Positives = 107/229 (46%), Gaps = 31/229 (13%)
Query: 1279 LKNISCTFPGRKKV-------------GVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNV 1325
I TFPG K + ++G G+GKSTL++ + +P GSI+ID
Sbjct: 7 FDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQ 66
Query: 1326 DI----TKIGLHDLRSRLGIIPQDPTLF-DGTVRGNLDPLVQYSDKQVWEALDKCQLGDL 1380
++ T L + + II Q+ L + TV NL L Q K +++ L
Sbjct: 67 EMRFASTTAALA---AGVAIIYQELHLVPEMTVAENL-YLGQLPHKGGI--VNRRLLNYE 120
Query: 1381 VRAKEEKLDSTVAENG--ENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQ 1438
R + E L + + + S+GQRQ+ + + L + + ++ DE T+S+ + +
Sbjct: 121 AREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLF 180
Query: 1439 KIISQEFKD--RTVVTIAHRIHTVID-SDLVLVLSDGR-IAEYDSPTKL 1483
++I +E + R ++ ++HR+ + D + V DGR +A +D ++
Sbjct: 181 RVI-RELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQV 228
|
Length = 501 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 7e-06
Identities = 64/254 (25%), Positives = 103/254 (40%), Gaps = 52/254 (20%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+S N++ R+ + LK+IS + + V ++G +G GK+TL++ I + T G+I
Sbjct: 5 LSIDNIRKRFGAF--TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIY 62
Query: 1322 IDNVDITKI--GLHDLRSRLGIIPQDPTLFDG-TVRGNLDPLVQYS-----------DKQ 1367
DIT++ D GI+ Q LF TV N + Y ++
Sbjct: 63 QGGRDITRLPPQKRD----YGIVFQSYALFPNLTVADN----IAYGLKNRGMGRAEVAER 114
Query: 1368 VWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATA 1427
V E LD L E K + S GQ+Q L R L +L+LDE
Sbjct: 115 VAELLDLVGLPG----SERKYPGQL-------SGGQQQRVALARALATSPGLLLLDEPL- 162
Query: 1428 SVDSATDGVIQKIISQEFKD---RTVVTIAHRIHTVIDSDLVLVLSD-------GRIAEY 1477
SA D +++ + E + R VT H D + L ++D G I +
Sbjct: 163 ---SALDARVREHLRTEIRQLQRRLGVTTIMVTH---DQEEALSMADRIVVMNHGVIEQV 216
Query: 1478 DSPTKLLEREDSFF 1491
+P ++ + F
Sbjct: 217 GTPQEIYRHPATPF 230
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 7e-06
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 38/154 (24%)
Query: 665 ICGTVG---SGKSSLLSCILGEIQK-MAGTVKISGTK-------------AYVPQS-PWI 706
+ G +G SGKS+LL +LG Q G + + AY+PQ P
Sbjct: 39 VTGLIGHNGSGKSTLLK-MLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAA 97
Query: 707 LTGNIRENILFG--------NQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGIN-M 757
+RE + G ++ + ++ EA +LV L + R ++ +
Sbjct: 98 EGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV---------GLKPLAHRLVDSL 148
Query: 758 SGGQKQRIQIARAVYQDADIYLLDDPFSAVD-AH 790
SGG++QR IA V QD+ LLD+P SA+D AH
Sbjct: 149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182
|
Length = 265 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 7e-06
Identities = 28/190 (14%), Positives = 60/190 (31%), Gaps = 58/190 (30%)
Query: 1289 RKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTL 1348
+ + +VG GSGK+TL +A+ R + P G +I + + + D + + + +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASG 61
Query: 1349 FDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFC 1408
L A++ K D
Sbjct: 62 SGELRLRLA----------------------LALARKLKPD------------------- 80
Query: 1409 LGRTLLKKSSILVLDEATASVDSATDGVIQKIIS-------QEFKDRTVVTIAHRIHTVI 1461
+L+LDE T+ +D+ + ++ + + K+ TV+ + +
Sbjct: 81 ----------VLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLG 130
Query: 1462 DSDLVLVLSD 1471
+ L
Sbjct: 131 PALLRRRFDR 140
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 7e-06
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 60/211 (28%)
Query: 657 VKRGMKVAICGTVGSGKSSLLSCILGEIQK------------------------------ 686
+ G + + G G GKS+ L + G+++
Sbjct: 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82
Query: 687 MAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGD 746
+ G VK+ YV P + G + E + K D + LV EL
Sbjct: 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELLK--------KKDERGKLDELVDQLEL----- 129
Query: 747 LTEIGERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVD-------AHTGTQLFKD 798
+ +R I +SGG+ QR+ IA A+ +DAD Y D+P S +D A +L +D
Sbjct: 130 -RHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED 188
Query: 799 CLMGILKDKSVLYVTHQVEFLP-AADIILVM 828
D VL V H + L +D I +
Sbjct: 189 -------DNYVLVVEHDLAVLDYLSDYIHCL 212
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 7e-06
Identities = 52/226 (23%), Positives = 103/226 (45%), Gaps = 41/226 (18%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQK---MAGTVKISGTK--------- 697
L + K G +A+ G+ G+GK++L++ + K +G+V ++G
Sbjct: 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAI 100
Query: 698 -AYVPQSP-WILTGNIRENILF------GNQYDSCKYDRTVEACALVKDFELFASGDLTE 749
AYV Q +I T +RE+++F + + V+ +++ L + T
Sbjct: 101 SAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDE--VLQALGLRKCAN-TR 157
Query: 750 IGERGI--NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVD---AHTGTQLFKDCLMGIL 804
IG G +SGG+++R+ A + D + D+P S +D A++ Q+ K
Sbjct: 158 IGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ--- 214
Query: 805 KDKSVLYVTHQVEFLPAADI------ILVMENGRIAQAGRFEELLK 844
K K+++ HQ P++++ I++M GR+A G ++ +
Sbjct: 215 KGKTIICTIHQ----PSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 8e-06
Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 33/209 (15%)
Query: 664 AICGTVGSGKSSLLSCI--LGEI---QKMAGTVKISGTKAYVP---------------QS 703
AI G G GKS+LL + + +I ++ G V + Y P Q
Sbjct: 34 AIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQ 93
Query: 704 PWILTGNIRENILFGNQY----DSCKYDRTVEACALVKDFELFASGDLTE--IGERGINM 757
P +I +N+ FG + + D VE K A D + + + G+ +
Sbjct: 94 PNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVE-----KSLRQAALWDEVKDNLHKSGLAL 148
Query: 758 SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVE 817
SGGQ+QR+ IAR + + ++ L+D+P SA+D T ++ + + ++ ++ VTH ++
Sbjct: 149 SGGQQQRLCIARVLAIEPEVILMDEPCSALDP-VSTMRIEELMQELKQNYTIAIVTHNMQ 207
Query: 818 FLP-AADIILVMENGRIAQAGRFEELLKQ 845
A+D + G + + GR E+ +
Sbjct: 208 QAARASDWTGFLLTGDLVEYGRTGEIFSR 236
|
Length = 251 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 8e-06
Identities = 51/208 (24%), Positives = 91/208 (43%), Gaps = 29/208 (13%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709
++ I L V + + G G+GKS+LL I G ++ +G + G PW T
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG-------HPW--TR 66
Query: 710 NIRENI--------LFGN--QYDSCKYDRTVEACALVKDFELFASGDLTEIGERGI-NMS 758
I L+ N ++ K T+ + E+ DLT G++ S
Sbjct: 67 KDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFS 126
Query: 759 GGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK--SVLYVTH-- 814
G KQR+ IA A+ + +LD+P + +D G Q ++ L+ ++ +V+ +H
Sbjct: 127 LGMKQRLGIAIALLNHPKLLILDEPTNGLDP-IGIQELRE-LIRSFPEQGITVILSSHIL 184
Query: 815 -QVEFLPAADIILVMENGRIAQAGRFEE 841
+V+ L AD I ++ G + G+ +
Sbjct: 185 SEVQQL--ADHIGIISEGVLGYQGKINK 210
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-06
Identities = 56/238 (23%), Positives = 93/238 (39%), Gaps = 41/238 (17%)
Query: 1262 ISFHNLQ--IRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
I H+L + E S+LK + + V +VG +GSGKSTL+ + + +P+ G
Sbjct: 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66
Query: 1320 IIIDNVDITKI---GLHDLRSR-LGIIPQD---------------PTLFDGTVRGNLDPL 1360
+ + + K+ LR+R +G + Q P G +
Sbjct: 67 VRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSAD---- 122
Query: 1361 VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSIL 1420
S L+ LG ++L A+ S G++Q L R + +L
Sbjct: 123 ---SRAGAKALLEAVGLG-------KRLTHYPAQ----LSGGEQQRVALARAFAGRPDVL 168
Query: 1421 VLDEATASVDSATDGVIQKIISQEFKDR--TVVTIAHRIHTVIDSDLVLVLSDGRIAE 1476
DE T ++D AT I ++ ++R T+V + H D L L GR+ E
Sbjct: 169 FADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 8e-06
Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 45/163 (27%)
Query: 657 VKRGMKVAICGTVGSGKSSLLSCILGE-----------------IQKMAGT--------- 690
+ G V I G G GKS+ L + GE I++ GT
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKL 156
Query: 691 ----VKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGD 746
++ YV P ++ G + E +L K+D VE
Sbjct: 157 YEGELRAVHKPQYVDLIPKVVKGKVGE-LLKKVDERG-KFDEVVERL------------G 202
Query: 747 LTEIGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVD 788
L + +R ++ +SGG+ QR+ IA A+ +DAD+Y D+P S +D
Sbjct: 203 LENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD 245
|
Length = 591 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 9e-06
Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 34/230 (14%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
V+ N++ T V ++G +G GK+T+++ + + +PT G I ID D+T ++
Sbjct: 21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH---RSIQQ 77
Query: 1338 R-LGIIPQDPTLFDGTVRGNLDPLVQYSDK-----------QVWEALDKCQLGDLVRAKE 1385
R + ++ Q LF G V Y K +V EAL +L DL ++
Sbjct: 78 RDICMVFQSYALFPHMSLGE---NVGYGLKMLGVPKEERKQRVKEAL---ELVDLAGFED 131
Query: 1386 EKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF 1445
+D S GQ+Q L R L+ K +L+ DE +++D+ +++ I +E
Sbjct: 132 RYVDQI--------SGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKI-REL 182
Query: 1446 KDRTVVTIAHRIHTVID----SDLVLVLSDGRIAEYDSPTKLLEREDSFF 1491
+ + +T + H + SD V+V++ G+I + SP +L + S F
Sbjct: 183 QQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF 232
|
Length = 351 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 9e-06
Identities = 59/289 (20%), Positives = 120/289 (41%), Gaps = 48/289 (16%)
Query: 584 DPIFNLPDLLSNIAQGKVSADRIAAYLQEDEI-----QRDAVEYVPK-----GRSEFEVE 633
+ + + D + I G+ R AA + ED+I R+ P+ G EV
Sbjct: 204 NEVKAISDTICVIRDGRHIGTRPAAGMTEDDIITMMVGRELTALYPREPHTIGEVILEVR 263
Query: 634 VVNGKFSWNPESSS-PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQ-KMAGTV 691
+ +W+P + +D + ++RG + I G VG+G++ L+ C+ G + G +
Sbjct: 264 NLT---AWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEI 320
Query: 692 KISGTK--------------AYVP----QSPWILTGNIRENILFGNQYDSCKYDRTVEAC 733
I G A VP + + + +NI R +A
Sbjct: 321 FIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA 380
Query: 734 AL------VKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAV 787
L ++ ++ + I +SGG +Q+ +A+ + + I +LD+P +
Sbjct: 381 ELKTILESIQRLKVKTASPELAIA----RLSGGNQQKAVLAKCLLLNPKILILDEPTRGI 436
Query: 788 DAHTGTQLFKDCLMGILKDK--SVLYVTHQV-EFLPAADIILVMENGRI 833
D +++K L+ L + +++ ++ ++ E L +D +LVM G++
Sbjct: 437 DVGAKYEIYK--LINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 1e-05
Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 39/224 (17%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQ-----KMAGTVKISGTKAY----- 699
LDG+ L++ A+ G GSGKS+LL I+ +++G V + G +
Sbjct: 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78
Query: 700 --------VPQSP-WILTGNIRENILFGNQYDSCKYDRTVEACALVKD---FELFASGDL 747
V Q P I +I EN+ G K +R V++ +++ + L +
Sbjct: 79 ELRRRVQMVFQIPNPIPNLSIFENVALG-----LKLNRLVKSKKELQERVRWALEKAQLW 133
Query: 748 TEIGER----GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI 803
E+ +R +SGGQ+QR+ IARA+ ++ L D+P + +D ++ + + +
Sbjct: 134 DEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI-ESLFLEL 192
Query: 804 LKDKSVLYVTHQVEFLPAA----DIILVMENGRIAQAGRFEELL 843
KD +++ VTH F A D + + G+I + G E+
Sbjct: 193 KKDMTIVLVTH---FPQQAARISDYVAFLYKGQIVEWGPTREVF 233
|
Length = 250 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 30/193 (15%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAY---------- 699
L I L + AI G G GKS+ + L + ++ +VK +G Y
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKT-LNRMVELVPSVKTTGKILYRDQNIFDKSY 98
Query: 700 -----------VPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLT 748
V Q P +I +N+ +G + K +T++ + + L +
Sbjct: 99 SVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDE---IVEKSLRGAAIWD 155
Query: 749 EIGER----GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL 804
E+ +R +SGGQ+QR+ IAR + + D+ L+D+P SA+D T ++ + +
Sbjct: 156 ELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDP-ISTLKVEELVQELK 214
Query: 805 KDKSVLYVTHQVE 817
KD S++ VTH ++
Sbjct: 215 KDYSIIIVTHNMQ 227
|
Length = 271 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-05
Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 31/223 (13%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSP--WIL 707
+D + L+VK G I GT G+GK++L I G ++ +G V + +V +
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359
Query: 708 TGNIRENILFGNQYDSCKYDRTV-----EACALVKDFEL-------------FASGDLTE 749
G + I +Q RTV EA L EL F E
Sbjct: 360 RGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEE 419
Query: 750 IGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--- 805
I ++ + +S G++ R+ +A+ + ++ I +LD+P +D T + ILK
Sbjct: 420 ILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHS----ILKARE 475
Query: 806 --DKSVLYVTHQVEF-LPAADIILVMENGRIAQAGRFEELLKQ 845
+++ + V+H ++F L D +M +G+I + G EE++++
Sbjct: 476 EMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 49/171 (28%), Positives = 70/171 (40%), Gaps = 43/171 (25%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEI------QKMAGTVKISGTK------ 697
L I L + + A G G GKS+LL + Q+ G + + G
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLR-TFNRMYELYPEQRAEGEILLDGENILTPKQ 87
Query: 698 ---------AYVPQSPWILTGNIRENILFG----NQYDSCKYDRTVE----ACAL---VK 737
V Q P +I +NI FG + + D VE AL VK
Sbjct: 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK 147
Query: 738 DFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVD 788
D +L SG ++SGGQ+QR+ IAR + ++ LLD+P SA+D
Sbjct: 148 D-KLHQSGY---------SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (114), Expect = 2e-05
Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 44/226 (19%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAG-----TVKISGTKAY----- 699
LD + + ++ G GSGK++ L + K++G V + G +
Sbjct: 37 LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96
Query: 700 ---------VPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALV--KDFELFASGDLT 748
+ Q P +I +N+L G V A LV K+F A LT
Sbjct: 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAG-----------VRAHKLVPRKEFRGVAQARLT 145
Query: 749 EIG----------ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKD 798
E+G + +SGGQ+Q + +AR + + ++ LLD+P SA+D T T+ ++
Sbjct: 146 EVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDP-TTTEKIEE 204
Query: 799 CLMGILKDKSVLYVTHQV-EFLPAADIILVMENGRIAQAGRFEELL 843
+ + +V+ VTH + + +D + +GR+ + G E+L
Sbjct: 205 FIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250
|
Length = 276 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 48/208 (23%), Positives = 100/208 (48%), Gaps = 17/208 (8%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDI---TKIGLHD 1334
VL +I+ + V + G +GSGK+TL+ I + GS+ + ++ ++ L
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 1335 LRSRLGIIPQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAK--EEKLDST 1391
LR +G I Q L T R N+ ++ ++ + + ++ A + LD
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEA-RERARAMLEAVGLGDHLDY- 137
Query: 1392 VAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDR--T 1449
N S GQ+Q + R L+ + +++ DE TA++DS + + +++ + +++ T
Sbjct: 138 ---YPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCT 194
Query: 1450 VVTIAH--RIHTVIDSDLVLVLSDGRIA 1475
++ + H RI V +D ++ + DG++
Sbjct: 195 ILIVTHDNRILDV--ADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 19/208 (9%)
Query: 1279 LKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPT---MGSIIIDNVDITKIGLHDL 1335
L I + VG+ G G+GKSTL++ I V P G I + + D
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMK-ILSGVYPHGTWDGEIYWSGSPLKASNIRDT 75
Query: 1336 -RSRLGIIPQDPTLF-DGTVRGNL---DPLVQYSDKQVWEAL-DKCQLGDLVRAKEEKLD 1389
R+ + II Q+ TL + +V N+ + + + + A+ + + +L+R E +LD
Sbjct: 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAK--NLLR--ELQLD 131
Query: 1390 -STVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDR 1448
V ++ GQ+QL + + L K++ +L+LDE ++S+ ++ II ++ K
Sbjct: 132 ADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDII-RDLKAH 190
Query: 1449 TV--VTIAHRIHTVID-SDLVLVLSDGR 1473
V V I+H+++ V D + V+ DG+
Sbjct: 191 GVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 41/223 (18%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG---TKAYVP----- 701
L+ + L V G I G G+GK++++ I G+ + G+V G T
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 702 ------QSPWI---LTGNIRENILFGNQYDSCKYDRTVEAC------ALVKD--FELFAS 744
Q P + LT + EN+ + D++V A A KD E+ +
Sbjct: 78 GIGRKFQKPTVFENLT--VFENLEL-----ALPRDKSVFASLFFRLSAEEKDRIEEVLET 130
Query: 745 GDLT-EIGERGINMSGGQKQRIQIARAVYQDADIYLLDDP---FSAVDAHTGTQLFKDCL 800
L E +S GQKQ ++I + QD + LLD+P + + +L K
Sbjct: 131 IGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS-- 188
Query: 801 MGILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEEL 842
+ SV+ V H +EF+ + AD + V+ G + G +++
Sbjct: 189 --LAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 11/173 (6%)
Query: 1265 HNLQIRYAEH--LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIII 1322
NL RY E VL N+S + + + +VG +GSGKSTL+ + + PT G +I
Sbjct: 9 DNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIF 68
Query: 1323 DNVDITKI---GLHDLRSR-LGIIPQDPTLF-DGTVRGNLDPLVQYSDKQVWEALDKCQL 1377
+ ++K+ +LR++ LG I Q L D T N+ + K+ E +
Sbjct: 69 NGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRAL- 127
Query: 1378 GDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD 1430
+++ A L+ S G+RQ + R L+ +++ DE T ++D
Sbjct: 128 -EMLAAV--GLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLD 177
|
Length = 233 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 60/229 (26%), Positives = 103/229 (44%), Gaps = 16/229 (6%)
Query: 1277 SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDI---TKIGLH 1333
+ NIS T P K ++G +G GK+TL++ I + P G I+ D +I ++ L+
Sbjct: 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLY 80
Query: 1334 DLRSRLGIIPQDPTLF-DGTVRGNLD-PLVQYSDKQVWEALDKCQLGDLVRAKEEKLDST 1391
+R R+ ++ Q LF D V N+ PL +++ Q+ L L V K E +
Sbjct: 81 TVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPL----LHSTVMMKLEAVGLR 134
Query: 1392 VAEN--GENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDR- 1448
A S G + L R + + +++ DE D T GV+ K+IS+
Sbjct: 135 GAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALG 194
Query: 1449 -TVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
T V ++H + V+ +D +++D +I + S L D Q +
Sbjct: 195 VTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPRVRQFL 243
|
Length = 269 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 60/237 (25%), Positives = 98/237 (41%), Gaps = 39/237 (16%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
V++ F+ + D I L V RG AI G G GK++LL I G+I G +
Sbjct: 8 VDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 692 --------KISGTKAYVP--------QSPWILTG-NIRENILFGNQYDSCKYDRTVEACA 734
+S ++ Y QS + T N+ +N+ + + + + +
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTV 124
Query: 735 LVKDFELFASGDLTEIGERGI------NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVD 788
++K L +G RG +SGG +R +ARA+ + D+ + D+PF D
Sbjct: 125 MMK---------LEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQD 175
Query: 789 AHTGTQLFK--DCLMGILKDKSVLYVTHQV-EFLPAADIILVMENGRIAQAGRFEEL 842
T L K L L V+ V+H V E L AD ++ + +I G + L
Sbjct: 176 PITMGVLVKLISELNSALGVTCVV-VSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231
|
Length = 269 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 21/211 (9%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+S H LQ + L ++S TF + G G GKS+L++ I I++P+ G+I
Sbjct: 2 LSLHQLQFNIEQ---KNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIY 58
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTL-FDGTVRGNLDPLVQY--SDKQVWEALDKCQLG 1378
N +I I + I + L + TV NL + S + ++ A+ +L
Sbjct: 59 YKNCNINNIA----KPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLH 114
Query: 1379 DLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQ 1438
DL+ K L S G +++ + R + +S + +LDE ++ ++
Sbjct: 115 DLLDEKCYSLSS-----------GMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLN 163
Query: 1439 KIISQEFKDRTVVTIAHRIHTVIDSDLVLVL 1469
+I + +V ++ + + I S +L L
Sbjct: 164 NLIVMKANSGGIVLLSSHLESSIKSAQILQL 194
|
Length = 195 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 58/232 (25%), Positives = 98/232 (42%), Gaps = 54/232 (23%)
Query: 1261 TISFHNLQ--IRYAEHLPSVLKNIS-CTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTM 1317
T+S+ N+ +LK+ S PG V V+GR GSG STL++A+ E +
Sbjct: 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEM-VLVLGRPGSGCSTLLKALANRTEGNV 61
Query: 1318 ---GSIIIDNVDITKIGLHDLRSRLGIIPQD---PTLFDGTVRGNLDPLVQYSDKQVWEA 1371
G I + + + + + +D PTL TVR E
Sbjct: 62 SVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL---TVR---------------ET 103
Query: 1372 LD---KCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATAS 1428
LD +C+ + VR S G+R+ + L+ ++S+L D +T
Sbjct: 104 LDFALRCKGNEFVRG---------------ISGGERKRVSIAEALVSRASVLCWDNSTRG 148
Query: 1429 VDSATD-GVIQKI--ISQEFKDRTVVTI---AHRIHTVIDSDLVLVLSDGRI 1474
+DS+T +++ I ++ K T V++ + I+ + D VLVL +GR
Sbjct: 149 LDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDK--VLVLYEGRQ 198
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 61/279 (21%), Positives = 109/279 (39%), Gaps = 55/279 (19%)
Query: 643 PESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQ 702
E S + I ++ +G V G G+GKS+ L + G + +G V+++G P
Sbjct: 33 KERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNG---KDPF 89
Query: 703 SPWILTGNIRE-----NILFGNQYDSCKYD----RTVEACALVKD--FELFAS--GDLTE 749
E ++ G Q +D ++E L+ + + FA LTE
Sbjct: 90 R------RREEYLRSIGLVMG-QKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTE 142
Query: 750 IG--ERGIN-----MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMG 802
I E + +S GQ+ R ++A A+ + LD+P +D + + +
Sbjct: 143 ILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNA-----QANIRE 197
Query: 803 ILKDK------SVLYVTH---QVEFLPAADIILVMENGRIAQAGRFEELLKQ-----NIG 848
LK+ +VL TH + L D +L+++ G++ G +L +Q
Sbjct: 198 FLKEYNEERQATVLLTTHIFDDIATLC--DRVLLIDQGQLVFDGTLAQLQEQFGPYKEFS 255
Query: 849 FEVLVGAHSQ---ALESVLTVETSSRTSQDPTPESELNS 884
E+ A S AL +T+E D + E +
Sbjct: 256 VELKQ-AKSLSQLALLGDVTIEEGLNIKNDVSREESADI 293
|
Length = 325 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDI--------TK 1329
VL I + V ++G +GSGK+TL++ I + +P G+I + ++ I K
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 1330 IGLHDLRSRLGIIPQDPTLF-DGTVRGNL--DPL-VQYSDKQVWEALDKCQLGDL-VRAK 1384
+ LR +G + Q+ LF TV N+ P+ V+ K+ A + L + + K
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK 137
Query: 1385 EEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG-VIQKIISQ 1443
E + S GQ+Q + R L + +++ DE T+++D G V+ I
Sbjct: 138 ETSYPRRL-------SGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQL 190
Query: 1444 EFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAE 1476
+ RT+V + H + D +D + + GRI E
Sbjct: 191 AQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE 224
|
Length = 250 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-05
Identities = 57/221 (25%), Positives = 103/221 (46%), Gaps = 44/221 (19%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKIS-GTKA-YVPQSPWI- 706
L I L G K+ + G G+GKS+LL + G ++ G + + G K Y+PQ P +
Sbjct: 21 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLD 80
Query: 707 LTGNIRENILFG--------NQYD--SCKY-DRTVEACALVKDF----ELFASGDLTEIG 751
T +REN+ G ++++ S K+ + + AL+ + E+ + D ++
Sbjct: 81 PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDL- 139
Query: 752 ERGI-----------------NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQ 794
+R + +SGG+++R+ + R + D+ LLD+P + +DA +
Sbjct: 140 DRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAES--- 196
Query: 795 LFKDCLMGILKD--KSVLYVTHQVEFLP-AADIILVMENGR 832
L L++ +V+ VTH FL A IL ++ GR
Sbjct: 197 --VAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGR 235
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 3e-05
Identities = 57/261 (21%), Positives = 112/261 (42%), Gaps = 43/261 (16%)
Query: 1252 PPSNWPDVGTI-SFHNLQIRYAEHLPSV--LKNISCTFPGRKKVGVVGRTGSGKSTLIQA 1308
P S+ D + + NL I + + + ++N+S + + + +VG +GSGKS A
Sbjct: 2 PHSDELDARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALA 61
Query: 1309 IFRIVEPTMGSI-------------IIDNVDITKIGLHDLR-SRLGIIPQDPTLFDGTVR 1354
+ R++E G + +I+ + + + +R + + +I Q+P
Sbjct: 62 LMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMT------ 115
Query: 1355 GNLDPLVQYSDKQVWEALDKCQ-------------LGDLVRAKEEKLDSTVAENGENWSV 1401
+L+P+ + Q+ E++ Q + D VR E + + ++ S
Sbjct: 116 -SLNPVFTVGE-QIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQ--TILSRYPHQLSG 171
Query: 1402 GQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIIS--QEFKDRTVVTIAHRIHT 1459
G RQ + L + ++L+ DE T ++D I ++I Q+ V+ I H +
Sbjct: 172 GMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGV 231
Query: 1460 VID-SDLVLVLSDGRIAEYDS 1479
V + +D VLV+ G E S
Sbjct: 232 VAEIADRVLVMYQGEAVETGS 252
|
Length = 623 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 47/220 (21%), Positives = 93/220 (42%), Gaps = 41/220 (18%)
Query: 641 WNPESSS-PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAY 699
+ + L GI +++G V G G+GK++ L + G +Q +G V+++G
Sbjct: 27 FKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG---L 83
Query: 700 VPQSPWILTGNIRENI--LFGN---------------------QYDSCKYDRTVEACALV 736
V PW I +FG ++ + ++ +
Sbjct: 84 V---PWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELS-- 138
Query: 737 KDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLF 796
EL +L + R +S GQ+ R +IA A+ + +I LD+P +D +
Sbjct: 139 ---ELLDLEELLDTPVR--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI- 192
Query: 797 KDCLMGILKDK--SVLYVTHQVEFLPA-ADIILVMENGRI 833
++ L +++ +VL +H ++ + A A +LV++ GR+
Sbjct: 193 RNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 23/209 (11%)
Query: 646 SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPW 705
+ L + + G +AI G+ GSGKS+LL + G +G V +G S
Sbjct: 21 QTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSA- 79
Query: 706 ILTGNIRENIL-FGNQYDSCKYDRT-VEACAL-------------VKDFELFASGDLTEI 750
+R L F Q+ D T +E A+ + E+ A+ L
Sbjct: 80 -AKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR 138
Query: 751 GE-RGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL---KD 806
R +SGG++QR+ IARA+ + + L D+P +DA +F+ L+G L +
Sbjct: 139 ANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ--LLGELNRLQG 196
Query: 807 KSVLYVTHQVEFLPAADIILVMENGRIAQ 835
+ L VTH ++ L M +GR+
Sbjct: 197 TAFLVVTHDLQLAKRMSRQLEMRDGRLTA 225
|
Length = 233 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 755 INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK-DKSVLYVT 813
I++SGG+ QR+ IA A+ ++A YL D+P + +D + + K+ L V
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 814 HQVEFLP-AADIILVMENGRIAQAGRF 839
H + L +D I V E G G
Sbjct: 130 HDLAVLDYLSDRIHVFE-GEPGVYGIA 155
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 4e-05
Identities = 41/202 (20%), Positives = 77/202 (38%), Gaps = 27/202 (13%)
Query: 1292 VGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHD-----------LRSRLG 1340
+G+ G G+G++ L +A+F + G I++D + D R G
Sbjct: 288 LGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEG 347
Query: 1341 IIPQDP-----TLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAEN 1395
++ TL ++ ++ +R K S
Sbjct: 348 LVLDMSIAENITL---ASLRRFSRRGLIDRRKERALAER-----YIRRLRIKTPSPEQPI 399
Query: 1396 GENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKD-RTVVTIA 1454
G S G +Q L R L +L+LDE T +D I ++I + + + ++ I+
Sbjct: 400 G-TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMIS 458
Query: 1455 HRIHTVID-SDLVLVLSDGRIA 1475
+ ++ SD +LV+ +GRI
Sbjct: 459 SELPELLGLSDRILVMREGRIV 480
|
Length = 500 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 30/212 (14%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK---------- 697
L+G+ L++ G V + G+ G+GKS+LL+ I G+++ +G + I G
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79
Query: 698 ---AYVPQSPWILTG---NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIG 751
A V Q P T I EN+ +S R + + + F L +G
Sbjct: 80 NLLARVFQDPLAGTAPELTIEENLALA---ESRGKKRGLSSALNERRRSSFRE-RLARLG 135
Query: 752 ERGIN--------MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI 803
N +SGGQ+Q + + A I LLD+ +A+D T + + +
Sbjct: 136 LGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIV 195
Query: 804 LKDK-SVLYVTHQVE-FLPAADIILVMENGRI 833
+ K + L VTH +E L + ++++ +G+I
Sbjct: 196 EEHKLTTLMVTHNMEDALDYGNRLIMLHSGKI 227
|
Length = 263 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 36/182 (19%)
Query: 664 AICGTVGSGKSSLLSCILGEIQKM---------AGTVKISGTKAY--------------- 699
AI G G GKS+ L I +M G + G Y
Sbjct: 69 AIIGPSGCGKSTFLRAI----NRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGM 124
Query: 700 VPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGER----GI 755
V Q P +I +NI +G + D+ + K A D E+ +R +
Sbjct: 125 VFQKPNPFPKSIFDNIAYGPRLHGIN-DKKQLEEIVEKSLRKAALWD--EVSDRLDKNAL 181
Query: 756 NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQ 815
+SGGQ+QR+ +AR + + +I LLD+P SA+D T +D + + +++ VTH
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKA-TAKIEDLIQELRGSYTIMIVTHN 240
Query: 816 VE 817
++
Sbjct: 241 MQ 242
|
Length = 286 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-05
Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 31/216 (14%)
Query: 647 SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWI 706
L + L ++ G A G GSGKS+++ + G G+V++ T S
Sbjct: 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLI-TSTSKNK 78
Query: 707 LTGNIRENILFGNQY-DSCKYDRTV----------------EACALVKDFELFASGDLTE 749
IR+ + Q+ +S ++ TV EA AL ++ +L G
Sbjct: 79 DIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALARE-KLALVGISES 137
Query: 750 IGERG-INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD-- 806
+ E+ +SGGQ +R+ IA + + I +LD+P + +D + LM + K
Sbjct: 138 LFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKE-----LMTLFKKLH 192
Query: 807 ---KSVLYVTHQVEFLPA-ADIILVMENGRIAQAGR 838
+++ VTH ++ + AD + V+E G++ +G+
Sbjct: 193 QSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
Length = 280 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 4e-05
Identities = 51/207 (24%), Positives = 82/207 (39%), Gaps = 53/207 (25%)
Query: 657 VKRGMKVAICGTVGSGKSSLLSCILGE-----------------IQKMAGT--------- 690
K G I G G GK++ + + GE +++ GT
Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155
Query: 691 ----VKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGD 746
+K+ YV P + G +RE +L K D + +V+ L
Sbjct: 156 YNGEIKVVHKPQYVDLIPKVFKGKVRE-LLK-------KVDERGKLDEVVERLGL----- 202
Query: 747 LTEIGERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAH---TGTQLFKDCLMG 802
I +R I +SGG+ QR+ IA A+ +DAD Y D+P S +D +L ++
Sbjct: 203 -ENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRE---- 257
Query: 803 ILKDKSVLYVTHQVEFLPA-ADIILVM 828
+ + K VL V H + L AD + +
Sbjct: 258 LAEGKYVLVVEHDLAVLDYLADNVHIA 284
|
Length = 590 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-05
Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 34/223 (15%)
Query: 651 DGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-AYVPQSPWILTG 709
+ + L+V+ V++ G G+GK+++ +C+ G + GT+ + G +P G
Sbjct: 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81
Query: 710 ------NIR--------ENIL-----------FGNQYDSCKYDRTVEACALVKDFELFAS 744
++R EN+L F + + R E+ AL +
Sbjct: 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAF-RRAESEALDRAATWLER 140
Query: 745 GDLTEIGERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI 803
L E R N++ GQ++R++IAR + +I +LD+P + ++ +L D L+
Sbjct: 141 VGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKEL--DELIAE 198
Query: 804 LKDK---SVLYVTHQVEF-LPAADIILVMENGRIAQAGRFEEL 842
L+++ +VL + H ++ + +D I V+ G G EE+
Sbjct: 199 LRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241
|
Length = 255 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 5e-05
Identities = 47/204 (23%), Positives = 89/204 (43%), Gaps = 25/204 (12%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709
L + L V G A+ G G+GKS+L+ + G + GT+ I+ Y +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINN-INYNKLDHKLAAQ 79
Query: 710 N-----------IRENILFGNQYDSCKYDRTVEACALV--KDFELFASGDLTEIG----- 751
I E + N Y + V ++ ++ + A+ L +G
Sbjct: 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL 139
Query: 752 -ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--KS 808
E+ N+S KQ ++IA+ + DA + ++D+P S++ LF +M L+ +
Sbjct: 140 DEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF--LIMNQLRKEGTA 197
Query: 809 VLYVTHQV-EFLPAADIILVMENG 831
++Y++H++ E D VM++G
Sbjct: 198 IVYISHKLAEIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 12/156 (7%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
+ +S T + + V G GSGK+TL++ + + P G ++++ + R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 1338 RLGIIPQDPTLFDGTVRGNLDPLVQY-SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENG 1396
L + +V NL SD+QV EAL + L +L
Sbjct: 75 LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQL-------- 126
Query: 1397 ENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSA 1432
S GQ++ L R LL + +LDE T ++D A
Sbjct: 127 ---SAGQQRRVALARLLLSGRPLWILDEPTTALDKA 159
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 57/228 (25%), Positives = 93/228 (40%), Gaps = 46/228 (20%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG----EIQKMAGTVKISG-------- 695
L G+ L VK+G AI G GSGKS+L I G E+ +GT+ G
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT--SGTILFKGQDLLELEP 71
Query: 696 ---TKAYV---PQSPWILTGN-----IRENILFGNQYDSCKYDRTVEACALVKDF-ELFA 743
+A + Q P + G +R + N S + + ++ +K A
Sbjct: 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSAL---NARRSARGEEPLDLLDFLKLLKAKLA 128
Query: 744 SGDLTE-IGERGIN--MSGGQKQRIQIARAVYQDADIYLLDDPFSAVD------AHTGTQ 794
+ E R +N SGG+K+R +I + + + +LD+ S +D G
Sbjct: 129 LLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGIN 188
Query: 795 LFKDCLMGILKDKSVLYVTHQVEFLP--AADIILVMENGRIAQAGRFE 840
++ D+S L +TH L D + V+ +GRI ++G E
Sbjct: 189 RLRE------PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-05
Identities = 53/193 (27%), Positives = 74/193 (38%), Gaps = 22/193 (11%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWIL 707
P L VK G V + G GSG S+LL + G V + G Y
Sbjct: 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT---EGNVSVEGDIHYNGIPYKEF 77
Query: 708 TGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQI 767
I++ ++ D TV DF L G+ E RGI SGG+++R+ I
Sbjct: 78 AEKYPGEIIYVSEEDVHFPTLTVRETL---DFALRCKGN--EF-VRGI--SGGERKRVSI 129
Query: 768 ARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADII-- 825
A A+ A + D+ +D+ T + L I VL T V A+D I
Sbjct: 130 AEALVSRASVLCWDNSTRGLDSSTAL----EILKCIRTMADVLKTTTFVSLYQASDEIYD 185
Query: 826 -----LVMENGRI 833
LV+ GR
Sbjct: 186 LFDKVLVLYEGRQ 198
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 6e-05
Identities = 61/243 (25%), Positives = 98/243 (40%), Gaps = 49/243 (20%)
Query: 1266 NLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRI------VEPTMGS 1319
++ +K IS + + +VG +GSGKS +I + P+ GS
Sbjct: 13 SVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPS-GS 71
Query: 1320 IIIDNVDITKIGLHDLR----SRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEAL--- 1372
I+ D D+ LR +++G+I Q+P +L+PL KQ+ E L
Sbjct: 72 ILFDGEDLLAASERQLRGVRGNKIGMIFQEPMT-------SLNPLHTI-GKQLAEVLRLH 123
Query: 1373 ----------DKCQLGDLV--RAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSIL 1420
+L +LV E++LD+ E S GQRQ + L + +L
Sbjct: 124 RGLSRAAARARALELLELVGIPEPEKRLDAYPHE----LSGGQRQRVMIAMALANEPDLL 179
Query: 1421 VLDEATASVDSATDGVIQKIISQEFKD------RTVVTIAHRIHTVID-SDLVLVLSDGR 1473
+ DE T +A D +Q I K+ ++ I H + V +D V V+ G
Sbjct: 180 IADEPT----TALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGE 235
Query: 1474 IAE 1476
I E
Sbjct: 236 IVE 238
|
Length = 534 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 6e-05
Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 44/192 (22%)
Query: 1292 VGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDIT-KIGLHDLRSRLGIIPQ----DP 1346
+G+VG G GK+T + + +++P G + + + I+ K PQ D
Sbjct: 368 IGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYK-------------PQYIKPD- 412
Query: 1347 TLFDGTVRGNLDPLV-QYSDKQVW-EALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQR 1404
+DGTV L + E + QL L LD V + S G+
Sbjct: 413 --YDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERL-------LDKNVKD----LSGGEL 459
Query: 1405 QLFCLGRTLLKKSSILVLDEATASVD----SATDGVIQKIISQEFKDRTVVTIAHRIHTV 1460
Q + L + + + +LDE +A +D A I++I E ++ T + + H I +
Sbjct: 460 QRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIA--EEREATALVVDHDI-YM 516
Query: 1461 ID--SDLVLVLS 1470
ID SD ++V
Sbjct: 517 IDYISDRLMVFE 528
|
Length = 590 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 7e-05
Identities = 64/238 (26%), Positives = 111/238 (46%), Gaps = 35/238 (14%)
Query: 1277 SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAI-FRIVEPTMGSIIIDNVDITKIGLHDL 1335
+LKN+S + + V+G +G+GK+TL+ A+ FR + GS + ++ I ++
Sbjct: 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSV-LLNGMPIDAKEM 97
Query: 1336 RSRLGIIPQD----PTLFDGTVRGNL--------DPLVQYSDKQ--VWEALDKCQLGDLV 1381
R+ + QD PTL TVR +L V +K+ V E L LG L
Sbjct: 98 RAISAYVQQDDLFIPTL---TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQ--ALG-LR 151
Query: 1382 RAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG-VIQ-- 1438
+ ++ G S G+R+ LL +L DE T+ +DS V+Q
Sbjct: 152 KCANTRIGVPGRVKG--LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVL 209
Query: 1439 KIISQEFKDRTVVTIAHRIHTVIDS--DLVLVLSDGRIAEYDSPTKLLEREDSFFSQL 1494
K ++Q K +T++ H+ + + D ++++++GR+A SP + + FFS L
Sbjct: 210 KGLAQ--KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP----FFSDL 261
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 7e-05
Identities = 53/180 (29%), Positives = 80/180 (44%), Gaps = 29/180 (16%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWI--- 706
L+ I +V G V I G GSGKS+L + I G GTV I G+ A + S +
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99
Query: 707 LTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINM-----SGGQ 761
LTG ENI ++ E + +F +IG + I S G
Sbjct: 100 LTG--IENIELKGLMMGLTKEKIKEIIPEIIEF--------ADIG-KFIYQPVKTYSSGM 148
Query: 762 KQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLF-KDCL--MGILKD--KSVLYVTHQV 816
K R+ A +V+ + DI ++D+ S G Q F K CL M K+ K++ +++H +
Sbjct: 149 KSRLGFAISVHINPDILVIDEALS-----VGDQTFTKKCLDKMNEFKEQGKTIFFISHSL 203
|
Length = 549 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 8e-05
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 748 TEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK 807
T+IG ++SGG +Q++ I R + +I +LD+P +D ++++ KDK
Sbjct: 387 TQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDK 442
Query: 808 SVLYVTHQV-EFLPAADIILVMENGRIA 834
++ ++ ++ E L D ILVM NG +A
Sbjct: 443 GIIIISSEMPELLGITDRILVMSNGLVA 470
|
Length = 491 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 60/244 (24%), Positives = 104/244 (42%), Gaps = 42/244 (17%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ + + V+ N+ T + + ++G +G GK+T+++ I P G I+
Sbjct: 15 VELRGISKSFDGK--EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM 72
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLDPLVQYS-----------DKQVW 1369
+D DIT + + + Q LF TV N V + +V
Sbjct: 73 LDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFEN----VAFGLRMQKTPAAEITPRVM 126
Query: 1370 EALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASV 1429
EAL QL + + K +L S GQ+Q + R ++ K +L+LDE+
Sbjct: 127 EALRMVQLEEFAQRKPHQL-----------SGGQQQRVAIARAVVNKPKVLLLDESL--- 172
Query: 1430 DSATDGVIQKIISQEFK--DR----TVVTIAH-RIHTVIDSDLVLVLSDGRIAEYDSPTK 1482
SA D ++K + E K R T V + H + + SD ++V+ DGRI + +P +
Sbjct: 173 -SALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231
Query: 1483 LLER 1486
+ E
Sbjct: 232 IYEE 235
|
Length = 375 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 53/244 (21%), Positives = 101/244 (41%), Gaps = 62/244 (25%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV---------------KIS 694
L GI + +K+G AI G G+GKS+L + G ++ +G + K+
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 695 GTKAYVPQSP--WILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGE 752
+ V Q P + + ++ +++ FG L +D E+ +
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFG-----------AVNLKLPED----------EVRK 120
Query: 753 R--------GIN---------MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQL 795
R GI +S GQK+R+ IA + + + +LD+P + +D G
Sbjct: 121 RVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDP-MGVSE 179
Query: 796 FKDCLMGILK--DKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQNIGFEVL 852
L+ + K +++ TH ++ +P D + VM+ GR+ G +E+ + E+L
Sbjct: 180 IMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK---EML 236
Query: 853 VGAH 856
+
Sbjct: 237 RKVN 240
|
Length = 283 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 55/234 (23%), Positives = 101/234 (43%), Gaps = 32/234 (13%)
Query: 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSI 1320
+I + + Y H L +I+ P + + ++G +G+GKS+L++ + + P G++
Sbjct: 2 SIQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 1321 IIDN--VDITKI----GLHDLRSRLGIIPQDPTLFDG-TVRGNL----DPLVQYSDKQV- 1368
I D +K + DLR +G++ Q L+ TV+ NL ++ S Q
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL 119
Query: 1369 ---WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEA 1425
+ L + +L L S GQ+Q + R L+ + +L+ DE
Sbjct: 120 ARAEKLLKRLRLKPYADRYPLHL-----------SGGQQQRVAIARALMMEPQVLLFDEP 168
Query: 1426 TASVDSATDGVIQKIISQEFKDR--TVVTIAHRIHTVID-SDLVLVLSDGRIAE 1476
TA++D I II +E + T V + H + + V+ + +G I E
Sbjct: 169 TAALDPEITAQIVSII-KELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221
|
Length = 242 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 59/285 (20%), Positives = 115/285 (40%), Gaps = 54/285 (18%)
Query: 591 DLLSNIAQGKVSADRIAAYLQEDEI-----QRDAVEYVPK-----GRSEFEVEVVNGKFS 640
D + I G+ A + + + ED+I R+ P G E +
Sbjct: 209 DTICVIRDGQHVATKDMSTMSEDDIITMMVGREITSLYPHEPHEIGDVILEARNLT---C 265
Query: 641 WNPESSS-PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQ-KMAGTVKISGTK- 697
W+ + +D + ++RG + + G VG+G++ L+ + G K G V I+G
Sbjct: 266 WDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPV 325
Query: 698 -------------AYVPQS-------PWILTGNIRENILFGNQYDSCKYDRTVEACAL-- 735
A VP+ P + G +NI C R A L
Sbjct: 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVG---KNITLSVLKSFCFKMRIDAAAELQI 382
Query: 736 ----VKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHT 791
++ ++ + IG +SGG +Q+ +A+ + + + +LD+P VD
Sbjct: 383 IGSAIQRLKVKTASPFLPIG----RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGA 438
Query: 792 GTQLFKDCLMGILKDK--SVLYVTHQV-EFLPAADIILVMENGRI 833
+++K L+ L + +++ V+ ++ E L +D +LV+ G++
Sbjct: 439 KYEIYK--LINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 21/145 (14%)
Query: 1294 VVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDG-T 1352
++G +G GKSTL++ + +PT G I++D VD++ + + + + ++ Q LF T
Sbjct: 50 LLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY--QRPINMMFQSYALFPHMT 107
Query: 1353 VRGNL------DPLVQYSDKQ-VWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405
V N+ D L + V E L + + + K +L S GQRQ
Sbjct: 108 VEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQL-----------SGGQRQ 156
Query: 1406 LFCLGRTLLKKSSILVLDEATASVD 1430
L R+L K+ +L+LDE ++D
Sbjct: 157 RVALARSLAKRPKLLLLDEPMGALD 181
|
Length = 377 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 42/216 (19%)
Query: 1292 VGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDIT-KIGLHDLRSRLGIIPQD-PTLF 1349
+G++G G GK+T ++ + +++P GS ++ ++ K PQ +
Sbjct: 370 IGILGPNGIGKTTFVKLLAGVIKPDEGSEE--DLKVSYK-------------PQYISPDY 414
Query: 1350 DGTVRGNLDPLV--QYSDKQVW-EALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQL 1406
DGTV L + + E + L DL L+ V + S G+ Q
Sbjct: 415 DGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDL-------LERPV----DELSGGELQR 463
Query: 1407 FCLGRTLLKKSSILVLDEATASVDS----ATDGVIQKIISQEFKDRTVVTIAHRIHTVID 1462
+ L +++ + +LDE +A +D VI++ I E ++T + + H I+ +ID
Sbjct: 464 VAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFI--ENNEKTALVVDHDIY-MID 520
Query: 1463 --SDLVLVLSD--GRIAEYDSPTKLLEREDSFFSQL 1494
SD ++V G+ P + E + F L
Sbjct: 521 YVSDRLIVFEGEPGKHGHASPPMSMREGMNRFLKNL 556
|
Length = 591 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 44/211 (20%)
Query: 663 VAICGTVGSGKSSLLSCILGEIQKMAGTVKIS------GTKAYVPQSPWILTGNIRENIL 716
+AI G GSGKS+L + G I+ +G + I G +Y Q R ++
Sbjct: 42 LAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQ---------RIRMI 92
Query: 717 FGNQYDSCKYDRTVEACALVKDFELFASGDLT-EIGERGIN------------------- 756
F + S + + + + DF L + DL E E+ I
Sbjct: 93 FQDPSTSLNPRQRI---SQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHM 149
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK---SVLYVT 813
++ GQKQR+ +ARA+ + + D+ +++D +QL LM L++K S +YVT
Sbjct: 150 LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN--LMLELQEKQGISYIYVT 207
Query: 814 HQVEFLP-AADIILVMENGRIAQAGRFEELL 843
+ + +D +LVM G + + G ++L
Sbjct: 208 QHLGMMKHISDQVLVMHQGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-04
Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 38/227 (16%)
Query: 1280 KNISC---TFPGRKKV-------------GVVGRTGSGKSTLIQAIFRIVEPTM-GSIII 1322
+N++C P RK+V GV G G+G++ L+QA+F G++ I
Sbjct: 261 RNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFI 320
Query: 1323 DNVDI-TKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDK-CQLGDL 1380
+ + + +R+ + ++P+D R + P++ L C +
Sbjct: 321 NGKPVDIRNPAQAIRAGIAMVPEDRK------RHGIVPILGVGKNITLSVLKSFCFKMRI 374
Query: 1381 VRAKEEK-LDSTVAENG----------ENWSVGQRQLFCLGRTLLKKSSILVLDEATASV 1429
A E + + S + S G +Q L + LL +L+LDE T V
Sbjct: 375 DAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGV 434
Query: 1430 DSATDGVIQKIISQEFKDR-TVVTIAHRIHTVID-SDLVLVLSDGRI 1474
D I K+I+Q ++ ++ ++ + V+ SD VLV+ +G++
Sbjct: 435 DVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 2e-04
Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 53/186 (28%)
Query: 1278 VLKNISCTF-PGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLR 1336
+LK+IS +F PG K+GV+G G+GKSTL++ + + + G G+
Sbjct: 22 ILKDISLSFFPG-AKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP------GI---- 70
Query: 1337 SRLGIIPQDPTLFDG-TVRGNLDPLVQ---------------------YSDK------QV 1368
++G +PQ+P L TVR N++ V D ++
Sbjct: 71 -KVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGEL 129
Query: 1369 WEALDKCQLGDLVRAKE---EKL-----DSTVAENGENWSVGQRQLFCLGRTLLKKSSIL 1420
E +D DL E + L D+ V S G+R+ L R LL+K +L
Sbjct: 130 QEIIDAADAWDLDSQLEIAMDALRCPPWDAKVT----KLSGGERRRVALCRLLLEKPDML 185
Query: 1421 VLDEAT 1426
+LDE T
Sbjct: 186 LLDEPT 191
|
Length = 556 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 37/203 (18%)
Query: 1277 SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLR 1336
+ L++ S T PG +VG GSGKSTL +A+ V G I I + L+
Sbjct: 21 TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQA----LQ 76
Query: 1337 SRL-GIIPQD-------PTLFDGTVR----GNLDPL--VQYSDKQ-VWEALDKCQLGDLV 1381
L +PQ P L + V G++ L + D+Q V AL
Sbjct: 77 KNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAAL--------- 127
Query: 1382 RAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKII 1441
A+ + ++ + GE S GQ++ L R + ++ +++LDE VD T+ +II
Sbjct: 128 -ARVDMVEFRHRQIGE-LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEA---RII 182
Query: 1442 S--QEFKD--RTVVTIAHRIHTV 1460
S +E +D +T++ H + +V
Sbjct: 183 SLLRELRDEGKTMLVSTHNLGSV 205
|
Length = 272 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 39/184 (21%)
Query: 664 AICGTVGSGKSSLLSCI-----LGEIQKMAGTVKISGTKAY---------------VPQS 703
AI G G GKS++L I L ++ G + + T Y V Q
Sbjct: 34 AIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQK 93
Query: 704 PWILTG-NIRENILFGNQYDS----CKYDRTVEACALVKDFELFASGDLTEIGER----G 754
P +I +N++ G + + + D VE+ +K L+ E+ +R
Sbjct: 94 PNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESS--LKRVALW-----DEVKDRLKSNA 146
Query: 755 INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK-SVLYVT 813
+ +SGGQ+QR+ IAR + ++ L+D+P SA+D + ++ + L+ LK+K +++ VT
Sbjct: 147 MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKI--EELIEELKEKYTIIIVT 204
Query: 814 HQVE 817
H ++
Sbjct: 205 HNMQ 208
|
Length = 252 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 62/255 (24%), Positives = 100/255 (39%), Gaps = 68/255 (26%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQ--------KMAGTVKISGT----- 696
L + L+++ G A+ G G+GKS+LL + G++ ++ G V ++G
Sbjct: 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76
Query: 697 --------KAYVPQ-SPWILTGNIRENILFGNQY-------DSCKYDRTVEACALVK-DF 739
+A +PQ + + RE +L G +Y D + AL
Sbjct: 77 DAPRLARLRAVLPQAAQPAFAFSAREIVLLG-RYPHARRAGALTHRDGEIAWQALALAGA 135
Query: 740 ELFASGDLTEIGERGINMSGGQKQRIQIARAVYQ---------DADIYLLDDPFSAVD-A 789
D+T +SGG+ R+Q AR + Q LLD+P +A+D A
Sbjct: 136 TALVGRDVT-------TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLA 188
Query: 790 H------TGTQLFKDCLMGILKDKSVLYVTHQVEFLPA--ADIILVMENGRIAQAGRFE- 840
H T +L +D +G VL + H L A AD I ++ +G I G
Sbjct: 189 HQHRLLDTVRRLARDWNLG------VLAIVHDPN-LAARHADRIAMLADGAIVAHGAPAD 241
Query: 841 ----ELLKQNIGFEV 851
+ + GF V
Sbjct: 242 VLTPAHIARCYGFAV 256
|
Length = 272 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 4e-04
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 748 TEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFK--DCLMGILK 805
T +G +SGGQKQRI IARA+ ++ I +LD+ S++D + + K + L G +
Sbjct: 571 TLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGN-E 629
Query: 806 DKSVLYVTHQVEFLPAADIILVMEN 830
++ + + H++ + A+ I V+ N
Sbjct: 630 NRITIIIAHRLSTIRYANTIFVLSN 654
|
Length = 1466 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 53/200 (26%), Positives = 102/200 (51%), Gaps = 24/200 (12%)
Query: 1295 VGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TV 1353
VG +G GKSTL++ I + + T G + I + + + R +G++ Q L+ +V
Sbjct: 35 VGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE-RG-VGMVFQSYALYPHLSV 92
Query: 1354 RGNLDPLVQYS-------DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQL 1406
N+ ++ + +++V + + QL L+ K + L S GQRQ
Sbjct: 93 AENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKAL-----------SGGQRQR 141
Query: 1407 FCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAH-RIHTVIDS 1463
+GRTL+ + S+ +LDE +++D+A ++ IS+ K RT++ + H ++ + +
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLA 201
Query: 1464 DLVLVLSDGRIAEYDSPTKL 1483
D ++VL GR+A+ P +L
Sbjct: 202 DKIVVLDAGRVAQVGKPLEL 221
|
Length = 369 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 23/157 (14%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG---TKAYVPQSPWI 706
L G+ ++ G + G G+GKS+LL I G + AG + SG T+ + P++
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 707 LTGNIRENILFGNQYDSCKYDRTVE---------ACALVKDFELFASGDLTEIG------ 751
R I Q DRTV A A D S L ++G
Sbjct: 78 -----RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK 132
Query: 752 ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVD 788
I +SGG++QR+ IARAV + L D+P +D
Sbjct: 133 NFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169
|
Length = 222 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-04
Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 44/215 (20%)
Query: 653 IQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIR 712
I V+ G V + G VG+G+S L+ + G ++ AG V + G K +SP IR
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDG-KPIDIRSP---RDAIR 327
Query: 713 ENILFGNQYDSCKYDRTVE---ACALVKD------------FELFASGDL-TEIGERGI- 755
I+ C DR E V D + E +R I
Sbjct: 328 AGIML------CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIR 381
Query: 756 --------------NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLM 801
N+SGG +Q+ + R + +D + LLD+P +D +++ + +
Sbjct: 382 SLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIY-NVIY 440
Query: 802 GILKDK-SVLYVTHQV-EFLPAADIILVMENGRIA 834
+ +VL+V+ + E L AD I+VM GRIA
Sbjct: 441 ELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA 475
|
Length = 501 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 53/224 (23%), Positives = 85/224 (37%), Gaps = 51/224 (22%)
Query: 1292 VGVVGRTGSGKSTLIQAIFRIVEP----TMGSIIIDNVDITKIGLHDLRSR-LGIIPQDP 1346
+ +VG +GSGKS AI ++ P T G I++D + + +R R + I Q+P
Sbjct: 15 LALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLS---IRGRHIATIMQNP 71
Query: 1347 TLFDGTVRGNLDPLVQYSD-----------------KQVWEALDKCQLGDLVRAKEEKLD 1389
R +PL + + EAL+ L D EE L
Sbjct: 72 -------RTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD----PEEVLK 120
Query: 1390 STVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--- 1446
+ S G Q + LL + L+ DE T + D V Q + + +
Sbjct: 121 KYPFQ----LSGGMLQRVMIALALLLEPPFLIADEPT----TDLDVVNQARVLKLLRELR 172
Query: 1447 ---DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486
++ I H + V +D V V+ DGRI E + ++
Sbjct: 173 QLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-04
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK---DKSVLYVT 813
+SGG++QR+ IA A+ ++ + D+P +A+D Q+ + L+ L+ + +L++T
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQ--LLRELQQELNMGLLFIT 214
Query: 814 HQVEFLPA-ADIILVMENGRIAQAGRFEELL 843
H + + AD + VM+NGR + R L
Sbjct: 215 HNLSIVRKLADRVAVMQNGRCVEQNRAATLF 245
|
Length = 529 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 6e-04
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK---DKSVLYVT 813
+SGG +QR+ IA A+ + + D+P +A+D Q+ + L+ +L+ V+++T
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ--LIKVLQKEMSMGVIFIT 226
Query: 814 HQVEFLP-AADIILVMENGRIAQAGRFEELLK 844
H + + AD +LVM G + G E++
Sbjct: 227 HDMGVVAEIADRVLVMYQGEAVETGSVEQIFH 258
|
Length = 623 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 7e-04
Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 35/210 (16%)
Query: 1277 SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIII----DNVDITKIGL 1332
VL+N+S + + V + G +GSGKSTL+++++ P G I++ + VD+
Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84
Query: 1333 HDL----RSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKL 1388
++ R+ +G + Q F + P V D L + ++ RAK L
Sbjct: 85 REVLEVRRTTIGYVSQ----FLRVI-----PRVSALDVVAEPLLARGVPREVARAKAADL 135
Query: 1389 DSTVAENGENWSV-------GQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKII 1441
+ + WS+ G++Q + R + IL+LDE TAS+D+ V+ ++I
Sbjct: 136 LTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELI 195
Query: 1442 SQE----------FKDRTV-VTIAHRIHTV 1460
+ F D V +A R+ V
Sbjct: 196 REAKARGAALVGIFHDEEVREAVADRLLDV 225
|
Length = 235 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 8e-04
Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 33/192 (17%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWIL 707
L + L++K G VA+ G G+GK++LL ILG K G + Y P S +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ-------KGRGEEKYRPDSGKVE 449
Query: 708 TGNIRENILFGNQYDSCKYDRTVEACALVKDFELFAS--GDLTE----IGERGIN----- 756
+ L +Y+ + T+ E S GDL + G++
Sbjct: 450 VPKNTVSALIPGEYEPEFGEVTI--------LEHLRSKTGDLNAAVEILNRAGLSDAVLY 501
Query: 757 ------MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVL 810
+S GQK+R ++A+ + + ++ L+D+ + +D T ++ + + L
Sbjct: 502 RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITL 561
Query: 811 Y-VTHQVEFLPA 821
VTH+ E A
Sbjct: 562 IVVTHRPEVGNA 573
|
Length = 593 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 9e-04
Identities = 53/190 (27%), Positives = 77/190 (40%), Gaps = 52/190 (27%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I NL + + L ++ ++S P VGV+G G+GKSTL + I +P G+I
Sbjct: 323 IEAENLSKGFGDKL--LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIK 380
Query: 1322 I-DNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEA----LDKCQ 1376
I + V +L + Q R LDP +K VWE LD Q
Sbjct: 381 IGETV------------KLAYVDQS--------RDALDP-----NKTVWEEISGGLDIIQ 415
Query: 1377 LGDL---VRA----------KEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLD 1423
LG RA ++K + S G+R L +TL ++L+LD
Sbjct: 416 LGKREVPSRAYVGRFNFKGSDQQKKVGQL-------SGGERNRVHLAKTLKSGGNVLLLD 468
Query: 1424 EATASVDSAT 1433
E T +D T
Sbjct: 469 EPTNDLDVET 478
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 0.001
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 29/174 (16%)
Query: 1294 VVGRTGSGKSTLIQAIFRIVE---PTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFD 1350
+ G G GKS+L FRI+ P G + TK + +L +PQ P +
Sbjct: 483 ICGPNGCGKSSL----FRILGELWPVYGGRL------TK----PAKGKLFYVPQRPYMTL 528
Query: 1351 GTVRGNL---DPLVQ-----YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVG 1402
GT+R + D SDK + + LD QL ++ + E S V + + S G
Sbjct: 529 GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHIL--EREGGWSAVQDWMDVLSGG 586
Query: 1403 QRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHR 1456
++Q + R K +LDE T++V +G + + + +EF T+ +++HR
Sbjct: 587 EKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYR-LCREFG-ITLFSVSHR 638
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 23/93 (24%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 756 NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD-KSVLYVTH 814
+SGGQK+R+ +A + + D + D+P + +D G + + + K K+++ VTH
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQ-GVKEILEIFDNLNKQGKTIILVTH 223
Query: 815 QVE-FLPAADIILVMENGRIAQAGRFEELLKQN 846
++ L + ++G+I + G ++L N
Sbjct: 224 DLDNVLEWTKRTIFFKDGKIIKDGDTYDILSDN 256
|
Length = 305 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 18/97 (18%)
Query: 1291 KVGVVGRTGSGKSTLIQAIFR----IVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDP 1346
+V +VGR GKSTLI A+ IV G T+ D + + +
Sbjct: 1 RVALVGRPNVGKSTLINALTGAKVAIVSDYPG--------TTR----DPILGVLGLGRQI 48
Query: 1347 TLFD--GTVRGNLDPLVQYSDKQVWEALDKCQLGDLV 1381
L D G + G + + EA+ + L LV
Sbjct: 49 ILVDTPGLIEGASEGKGVEGFNRFLEAIREADLILLV 85
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 23/91 (25%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK--SVLYVTH 814
+SGG QR+ IA A+ + + D+P +A+D Q+ + L+ + + + +++ +TH
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQII-ELLLELQQKENMALVLITH 212
Query: 815 QVEFLP-AADIILVMENGRIAQAGRFEELLK 844
+ + AA I+VM G++ + G+ ++ +
Sbjct: 213 DLALVAEAAHKIIVMYAGQVVETGKAHDIFR 243
|
Length = 326 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 1292 VGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL---------RSRLGII 1342
+G+VG +GSGK+TL+ A+ + P G + D L+ L R+ G +
Sbjct: 35 LGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFV 94
Query: 1343 PQDP 1346
Q P
Sbjct: 95 HQHP 98
|
Length = 258 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 29/225 (12%)
Query: 1276 PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL 1335
+V ++IS P + VG +G G+GKST ++ + ++ PT G + ++ D + L
Sbjct: 38 EAV-QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYL 96
Query: 1336 RS-------RLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDK----CQLGDLVRAK 1384
RS +L + P L V L + + D + E LD L ++
Sbjct: 97 RSIGLVMGQKLQLWWDLPALDSLEV---LKLIYEIPDDEFAERLDFLTEILDLEGFLKWP 153
Query: 1385 EEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQE 1444
KL S+GQR L LL +L LDE T +D I++ + +
Sbjct: 154 VRKL-----------SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY 202
Query: 1445 FKDR--TVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486
++R TV+ H + D VL++ G++ + +L E+
Sbjct: 203 NEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247
|
Length = 325 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 42/191 (21%), Positives = 74/191 (38%), Gaps = 20/191 (10%)
Query: 1294 VVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL-RSRLGIIPQDPTLFDGT 1352
+VG G+GKSTL+ + + GSI + +L R R + Q F
Sbjct: 30 LVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPF--- 85
Query: 1353 VRGNLDPLVQY-----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLF 1407
P+ Y DK E L+ + + ++ ST +G W +
Sbjct: 86 ----AMPVWHYLTLHQPDKTRTELLN--DVAGALALDDKLGRSTNQLSGGEWQRVRLAAV 139
Query: 1408 CLGRT--LLKKSSILVLDEATASVDSATDGVIQKIISQEFKD-RTVVTIAHRI-HTVIDS 1463
L T +L+LDE S+D A + +++S + +V +H + HT+ +
Sbjct: 140 VLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHA 199
Query: 1464 DLVLVLSDGRI 1474
+L G++
Sbjct: 200 HRAWLLKRGKL 210
|
Length = 248 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.002
Identities = 46/159 (28%), Positives = 64/159 (40%), Gaps = 32/159 (20%)
Query: 651 DGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------A 698
G+ + G V I G G+GK+SLL + G + AG V G
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77
Query: 699 YVPQSPWI---LTGNIRENILFGNQYDSCKYDR--TVEACALV--KDFELFASGDLTEIG 751
Y+ P I LT EN+ F Q D EA A V FE L
Sbjct: 78 YLGHQPGIKTELTA--LENLRF-YQRLHGPGDDEALWEALAQVGLAGFEDVPVRQL---- 130
Query: 752 ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAH 790
S GQ++R+ +AR A +++LD+PF+A+D
Sbjct: 131 ------SAGQQRRVALARLWLTRAPLWILDEPFTAIDKQ 163
|
Length = 204 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 10/75 (13%)
Query: 637 GKFSWNPESSSPTLDGIQL------KVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT 690
GK + E+ + +DG QL +V+RG K+A+ G G GK++LL +LG++Q +G
Sbjct: 316 GKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGR 375
Query: 691 VKISGTK---AYVPQ 702
+ GTK AY Q
Sbjct: 376 IHC-GTKLEVAYFDQ 389
|
Length = 635 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 39/192 (20%), Positives = 79/192 (41%), Gaps = 34/192 (17%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709
L + + + + V + G GSGKS+L++ L IS + I
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL---YASGKARLISFLPKFSRN-KLIFID 66
Query: 710 NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIAR 769
++ I G Y LT +G++ +SGG+ QR+++A
Sbjct: 67 QLQFLIDVGLGY-------------------------LT-LGQKLSTLSGGELQRVKLAS 100
Query: 770 AVYQDAD--IYLLDDPFSAVDAHTGTQLFKDCLMGILKDK-SVLYVTHQVEFLPAADIIL 826
++ + +++LD+P + + QL + + G++ +V+ + H ++ L +AD I+
Sbjct: 101 ELFSEPPGTLFILDEPSTGLHQQDINQLL-EVIKGLIDLGNTVILIEHNLDVLSSADWII 159
Query: 827 VMENGRIAQAGR 838
G G+
Sbjct: 160 DFGPGSGKSGGK 171
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 46/232 (19%), Positives = 97/232 (41%), Gaps = 32/232 (13%)
Query: 1286 FPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL---------R 1336
+PG + +G+VG +GSGKSTL+ + + P G+ ++ L+ L R
Sbjct: 27 YPG-EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMR 85
Query: 1337 SRLGIIPQDPTLFDGTVR-----GN-----LDPLVQYSDKQVWEALDKCQLGDLVRAKEE 1386
+ G + Q+P DG N + ++ A D + ++ + +
Sbjct: 86 TEWGFVHQNPR--DGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEIDPTRID 143
Query: 1387 KLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK 1446
L +S G +Q + R L+ + ++ +DE T +D + + ++ +
Sbjct: 144 DLPRA-------FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVR 196
Query: 1447 DR--TVVTIAHRIHTV-IDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
D V+ + H + + + +LV+ GR+ E ++L+ ++QL+
Sbjct: 197 DLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLL 248
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 758 SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQ---LFKD-------CLMGILKDK 807
SGGQ QRI IARA+ + + + D+P SA+D Q L + L+ I D
Sbjct: 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL 222
Query: 808 SVLYVTHQVEFLPAADIILVMENGRIAQAGRFEEL 842
+V V H +D +LVM G + G ++E+
Sbjct: 223 AV--VKH------ISDRVLVMYLGHAVELGTYDEV 249
|
Length = 331 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.003
Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 48/214 (22%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT-------VKISGTKA---- 698
L G L V G +A+ G G+GKS+++ + G + AG+ V +G K+
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79
Query: 699 ----------YVPQSPWILTGNIRENILFG----NQYDSCKYDRT-VEACALVKDFELFA 743
+PQ LT I ENI G N++ + + EA L+ L
Sbjct: 80 GIGIIHQELNLIPQ----LT--IAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF 133
Query: 744 SGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQ---LFKDCL 800
S D +GE I G++Q ++IA+ + ++ + ++D+P DA T T+ LF+ +
Sbjct: 134 SSD-KLVGELSI----GEQQMVEIAKVLSFESKVIIMDEP---TDALTDTETESLFR--V 183
Query: 801 MGILKDKS--VLYVTHQV-EFLPAADIILVMENG 831
+ LK + ++Y++H++ E D + V +G
Sbjct: 184 IRELKSQGRGIVYISHRLKEIFEICDDVTVFRDG 217
|
Length = 501 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 0.003
Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 49/157 (31%)
Query: 651 DGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK--AYVPQSPWILT 708
D + + G V I G G+GKS+L I G+ Q +GT+KI T AYV QS
Sbjct: 341 DDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQS----- 395
Query: 709 GNIRENILFGNQYDSCKYDRTVEACALVKDFELFASG-DLTEIGERGIN----------- 756
R+ + D ++TV +E + G D+ ++G R I
Sbjct: 396 ---RDAL------DP---NKTV--------WEEISGGLDIIKVGNREIPSRAYVGRFNFK 435
Query: 757 ----------MSGGQKQRIQIARAVYQDADIYLLDDP 783
+SGG++ R+ +A+ + Q ++ LLD+P
Sbjct: 436 GGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEP 472
|
Length = 556 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 758 SGGQKQRIQIARAVYQDADIYLLDDPFSAVDA 789
SGG++QR+ IAR D I LLD+P +++DA
Sbjct: 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDA 185
|
Length = 235 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.004
Identities = 57/247 (23%), Positives = 101/247 (40%), Gaps = 58/247 (23%)
Query: 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSI 1320
+I + + Y H L +I+ P + + ++G +G+GKS+L++ + + P G++
Sbjct: 2 SIQLNGINCFYGAH--QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 1321 IIDN--------VDITKIGLHDLRSRLGIIPQD----PTLFDGTVRGNLDPLVQYSDKQV 1368
I I LR +G++ Q P L TV+ NL
Sbjct: 60 NIAGNHFDFSKTPSDKAIRE--LRRNVGMVFQQYNLWPHL---TVQQNL----------- 103
Query: 1369 WEA------LDKCQLGDLVRAKEEKLDSTV--AENGENW----SVGQRQLFCLGRTLLKK 1416
EA L K Q A+ EKL + + + S GQ+Q + R L+ +
Sbjct: 104 IEAPCRVLGLSKDQ----ALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMME 159
Query: 1417 SSILVLDEATASVDSATDGVIQKII---SQEFKDRTVVT----IAHRIHTVIDSDLVLVL 1469
+L+ DE TA++D I II ++ + +VT +A + + V+ +
Sbjct: 160 PQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTAS-----RVVYM 214
Query: 1470 SDGRIAE 1476
+G I E
Sbjct: 215 ENGHIVE 221
|
Length = 242 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.004
Identities = 46/213 (21%), Positives = 79/213 (37%), Gaps = 67/213 (31%)
Query: 643 PESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG--EIQKMAGTVKISGTK--- 697
L+ I VK G A+ G G+GK++LL + G + G + I+G
Sbjct: 16 KGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDK 75
Query: 698 ------AYVPQSPWILTGN--IRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTE 749
YV Q + + N +RE + F S L
Sbjct: 76 NFQRSTGYVEQQD-VHSPNLTVREALRF--------------------------SALL-- 106
Query: 750 IGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--- 806
RG+++ Q++R+ I + I LD+P S +D+ ++ LK
Sbjct: 107 ---RGLSVE--QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYN-----IVRFLKKLAD 156
Query: 807 --KSVLYVTHQVEFLPAADI------ILVMENG 831
+++L HQ P+A I +L+++ G
Sbjct: 157 SGQAILCTIHQ----PSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1513 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-273 Score=2606.63 Aligned_cols=1255 Identities=47% Similarity=0.775 Sum_probs=1164.2
Q ss_pred CCCCCCCCh--hHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHhHHHHHhhcCCCCchhHHHHHHHHH
Q 000432 236 DSPYGKSTL--LQLVTFSWLNPLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLDLVKEKEGSTNPSIYKAIFFFIR 313 (1513)
Q Consensus 236 ~~p~~~a~~--~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~l~~~l~~~~~ 313 (1513)
++|.+.++. +|++||||++|++++|||++|+.+|+|+++++|+++.++++|++.|+++.++.+ ++|+++++++++||
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~-~~psl~~al~~~f~ 200 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSG-KKPSLLRALLRTFG 200 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhcccc-CCcHHHHHHHHHHH
Confidence 445555555 999999999999999999999999999999999999999999999999875543 67899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 314 KKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRLRAALIS 393 (1513)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~ 393 (1513)
+++++.+++.++.+.+.+++|.+++.+++++++++... +.||+++++++++.++++++.++|++..+++|+|+|+++.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~-~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~ 279 (1381)
T KOG0054|consen 201 RTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPL-NNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALIS 279 (1381)
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCccc-chhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999999999999998874443 78999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 394 HLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTCNI 473 (1513)
Q Consensus 394 ~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~~~l~~L~~~lg~~~l~~l~~~~~~~~~~~ 473 (1513)
+||+|+|++++.+++++++|+|+|+|++|++|+.+++.++|.+|..|+|+++++++||..+|+++++|++++++++|+|.
T Consensus 280 ~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~ 359 (1381)
T KOG0054|consen 280 AIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNS 359 (1381)
T ss_pred HHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 474 PITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWGSPTFIS 553 (1513)
Q Consensus 474 ~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~~~~~~~~p~~v~ 553 (1513)
+++++++++|++.|+.+|+|++.|+|+|+|||+||+||||+.|.++|++.|++|+++++|..+..+++.+.++++|.+++
T Consensus 360 ~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~ 439 (1381)
T KOG0054|consen 360 FLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVS 439 (1381)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCCcceE
Q 000432 554 VVTFGACM-LLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEV 632 (1513)
Q Consensus 554 ~~~f~~~~-~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~~I 632 (1513)
+++|++|. ..++.+|+.++|+++++|++|+.|+.++|+.++.+.|++||++|+++||..+|.+++..+..+..+.+.+|
T Consensus 440 ~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i 519 (1381)
T KOG0054|consen 440 VVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAI 519 (1381)
T ss_pred HHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceE
Confidence 99999999 77899999999999999999999999999999999999999999999999999887766543444566789
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCeEEEEcCCCcccCccHH
Q 000432 633 EVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIR 712 (1513)
Q Consensus 633 ~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~~ayv~Q~~~l~~~ti~ 712 (1513)
+++|++|+|+++++.|+|+||||+|++|+++||||++||||||||++|+||+++.+|+|.++|.+|||||+|||||||||
T Consensus 520 ~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvr 599 (1381)
T KOG0054|consen 520 EIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVR 599 (1381)
T ss_pred EEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHH
Confidence 99999999998666779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHH
Q 000432 713 ENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTG 792 (1513)
Q Consensus 713 eNI~fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~illLDep~salD~~~~ 792 (1513)
|||+||+|||++||++|+++|+|.+|++.||+||+|+|||||+||||||||||+||||+|+|+||||||||+||||+||+
T Consensus 600 eNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg 679 (1381)
T KOG0054|consen 600 ENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVG 679 (1381)
T ss_pred HhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhcCccHHHHHHhhhhhhhhhcccccCCCC
Q 000432 793 TQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGAHSQALESVLTVETSSRT 872 (1513)
Q Consensus 793 ~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 872 (1513)
+|||++|+++.+++||||+|||++++|++||+|++|+||+|.++|+|+|+++.+..|.++..+.. .+..+..+. ..
T Consensus 680 ~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~--~~~~~~~~~--~~ 755 (1381)
T KOG0054|consen 680 KHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEE--SEQEEEASE--KD 755 (1381)
T ss_pred HHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccc--hhhcccccc--cc
Confidence 99999999999999999999999999999999999999999999999999999999998843221 111110000 00
Q ss_pred CCCCCCCCccCcCccccccccccCCCccchhhhhhhhcCCCchhhhHhhhcccchHHHHHHHHhhhhhhHHHHHHHHHHH
Q 000432 873 SQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGGKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSS 952 (1513)
Q Consensus 873 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~~~~y~~~~~~~~~~~~~~l~~~~ 952 (1513)
.+... .... .+. +... ..+..+.+. .+.+....++.++|+++.|.++|++|+.|+++.+|+..+++++++.++
T Consensus 756 ~~~~~--~~~~-~~~-~~~~-~~~~~~~~~--~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~ 828 (1381)
T KOG0054|consen 756 LESGE--SSRE-SES-RSLE-SLSSEEEKS--KDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVL 828 (1381)
T ss_pred ccccc--cccc-hhh-hhhh-hhccccccc--ccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 00000 0000 000 0000 000000000 011122456778899999999999999999987777777777889999
Q ss_pred HHHHHHhhhhhhcccCCCCCCCCCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccc
Q 000432 953 FQVLQVASNYWMAWASPPTSDGEPA-LGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAF 1031 (1513)
Q Consensus 953 ~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~f 1031 (1513)
.++++++++||++||.+........ .+...|+++|+++++++.++.+++++.+..+++++|++||++|+++++|+||+|
T Consensus 829 ~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~F 908 (1381)
T KOG0054|consen 829 TQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSF 908 (1381)
T ss_pred HHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh
Confidence 9999999999999666553221111 456789999999999999999999999999999999999999999999999999
Q ss_pred ccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1032 FDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARL 1111 (1513)
Q Consensus 1032 Fd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv~ip~~~l~~~~~~~y~~~~r~l~rl 1111 (1513)
||+||+|||+||||+|++.+|..+|..+..++.++++++++++++++++|+++++++|+.++++++++||.+++||++|+
T Consensus 909 FdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRL 988 (1381)
T KOG0054|consen 909 FDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRL 988 (1381)
T ss_pred cCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000432 1112 AEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPE 1191 (1513)
Q Consensus 1112 ~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~ 1191 (1513)
++.+|||+++||+||+.|+.|||||++|++|.+++.+++|.+++++|....++||+++|+|+++++++.+++++++..+.
T Consensus 989 esitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~ 1068 (1381)
T KOG0054|consen 989 ESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPS 1068 (1381)
T ss_pred hhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887766
Q ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCceEEEEEEEEEE
Q 000432 1192 GIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRY 1271 (1513)
Q Consensus 1192 g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvsf~Y 1271 (1513)
+..+||.+|++++|++++++.++|++++.+++|++|+|||||.||.++|+|+|+..+..+||++||++|+|+|+|+++||
T Consensus 1069 ~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RY 1148 (1381)
T KOG0054|consen 1069 GLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRY 1148 (1381)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEe
Confidence 65889999999999999999999999999999999999999999999999988777666699999999999999999999
Q ss_pred cCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEcCCCccccC
Q 000432 1272 AEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDG 1351 (1513)
Q Consensus 1272 ~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~LF~g 1351 (1513)
+|+.|+|||||||+|+||||||||||||||||||+++|||+.||.+|+|.|||+||+++++||||++++||||||+||+|
T Consensus 1149 rp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG 1228 (1381)
T KOG0054|consen 1149 RPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG 1228 (1381)
T ss_pred CCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 000432 1352 TVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDS 1431 (1513)
Q Consensus 1352 TIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~ 1431 (1513)
|||+||||+++|+|+|||+|||+|+|+++|+++|+|||++|.|+|+|||.||||++||||||||++|||||||||||+|+
T Consensus 1229 TvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~ 1308 (1381)
T KOG0054|consen 1229 TVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDP 1308 (1381)
T ss_pred ccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhcCChHHHHHHHHHhhccc
Q 000432 1432 ATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMRSQ 1503 (1513)
Q Consensus 1432 ~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~~~~~~~~~ 1503 (1513)
+||+.||++||++|+|||||+||||++||+|||||+|||+|+|+|+|+|++|+++++|.|++++++++.++.
T Consensus 1309 ~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~~~~~ 1380 (1381)
T KOG0054|consen 1309 ETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEAALSSR 1380 (1381)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999998876653
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-216 Score=2198.16 Aligned_cols=1348 Identities=34% Similarity=0.555 Sum_probs=1155.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCccccchhHHHHHHHH---HHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHH
Q 000432 119 FSSRIMQVVSWASTLFLLCKIIPNSAHVKFPWILRAWWFCS---FLFSILCTALHTYLRIRYRGQFRIQDYVDIIALLAS 195 (1513)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1513)
++.+++..++++++.++...+++++ .++++.+++||++. +++.++......+ . ...... .+..+.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~----~~~~~~~~ 184 (1622)
T PLN03130 115 LIVEALTWCSMLVMIGVETKIYIRE--FRWYVRFAVIYVLVGDAVMLNLVLSVKEYY---S-SFVLYL----YISEVAAQ 184 (1622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc--CCCcceeehhHHHhhHHHHHHHHHHHHHHH---h-ccccce----ehhHHHHH
Confidence 5556777777777777666667664 67899999999998 6666552211111 1 100011 22222222
Q ss_pred HHHHHHH-hccccccccccCCCCCCCCcc-----ccccccccCCCCCCCCCCCChhHHHHHHhHHHHHHhhccCCCCCCC
Q 000432 196 TFLFGIS-IQGKTGLLLHTASSDTTEPFL-----NVKADKQFKSKRDSPYGKSTLLQLVTFSWLNPLFAVGIKKPLELDD 269 (1513)
Q Consensus 196 ~~~~~~~-~~~~~~~~~~~~~~~~~~p~~-----~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~D 269 (1513)
+.+.++. +..++.++. ..+.|.. +.+-++.+.+.+++||++||+|||+||+|++|++++|||++|+.+|
T Consensus 185 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~D 259 (1622)
T PLN03130 185 VLFGILLLVYFPNLDPY-----PGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKD 259 (1622)
T ss_pred HHHHHHHHHHHhcCCCC-----cccccccccccccccccCCcccCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCChhh
Confidence 2221111 222222210 0111100 0000112334677999999999999999999999999999999999
Q ss_pred CCCCCccCcHHHHHHHHHHhHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 000432 270 IPDVDIKDSAEFLSNRFEQDLDLVKEKEGSTNPSIYKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKS 349 (1513)
Q Consensus 270 l~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~ 349 (1513)
||+|+++|+++.++++|++.|+++.++ ++++++++++++||+.++.++++.++.+++.+++|++++.+++++.+++.
T Consensus 260 l~~l~~~~~~~~~~~~~~~~w~~~~~~---~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~ 336 (1622)
T PLN03130 260 VWKLDTWDQTETLYRSFQKCWDEELKK---PKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEP 336 (1622)
T ss_pred ccCCChhhhHHHHHHHHHHHHHHHhcc---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999877532 45899999999999999999999999999999999999999999975432
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHH
Q 000432 350 RSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDF 429 (1513)
Q Consensus 350 ~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~ 429 (1513)
. +.++.++++++++.++.+++.+++.+...+++.++|..++..+|+|.++++...+++.++|+++|+|++|++++.++
T Consensus 337 -~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~ 414 (1622)
T PLN03130 337 -A-WIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQI 414 (1622)
T ss_pred -c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 2 45777776666666666777777888788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000432 430 IFYSNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKL 509 (1513)
Q Consensus 430 ~~~~~~~~~~pl~i~~~l~~L~~~lg~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~ 509 (1513)
+..+|.+|..|++++++++++|..+|++++++++++++++|++..+.+++++.+++.++.+|+|.+.++|+++|||+||+
T Consensus 415 ~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~ 494 (1622)
T PLN03130 415 CQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKC 494 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Q 000432 510 QAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNL 589 (1513)
Q Consensus 510 ~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~l 589 (1513)
|+||+.|.+++++.|++|++..++..+..+...+++...|.++++++|++|.+.++.+|++.+|+++++++.+..|+..+
T Consensus 495 ~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l 574 (1622)
T PLN03130 495 YAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFML 574 (1622)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888777778888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecC
Q 000432 590 PDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTV 669 (1513)
Q Consensus 590 p~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~ 669 (1513)
|..+..+.++++|++||++|++.+|....... +.......|+++|++|+|++++++++|+|+||+|++|++++||||+
T Consensus 575 ~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~--~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~s 652 (1622)
T PLN03130 575 PNLITQAVNANVSLKRLEELLLAEERVLLPNP--PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGST 652 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcccccccCC--cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCC
Confidence 99999999999999999999987664322111 1111234699999999998644568999999999999999999999
Q ss_pred CCcHHHHHHHHhcCccCCC-cEEEECCeEEEEcCCCcccCccHHHHHccCCCCCchHHHHHHHHHhcHHHHhhccCCCCc
Q 000432 670 GSGKSSLLSCILGEIQKMA-GTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLT 748 (1513)
Q Consensus 670 GsGKStLl~~llg~~~~~~-G~i~~~g~~ayv~Q~~~l~~~ti~eNI~fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T 748 (1513)
|||||||+++|+|+++|.+ |+|.+.|.+|||||+||||++||||||+||+|+|+++|++++++|+|.+|++.||+||+|
T Consensus 653 GSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T 732 (1622)
T PLN03130 653 GEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLT 732 (1622)
T ss_pred CCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccc
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEE
Q 000432 749 EIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVM 828 (1513)
Q Consensus 749 ~Ige~g~~LSGGQkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl 828 (1513)
+|||+|.+|||||||||+||||+|++||||||||||||||+|++++|+++|+++.+++||+|+|||++++++.||+|++|
T Consensus 733 ~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L 812 (1622)
T PLN03130 733 EIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILV 812 (1622)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred eCCeEEEecChHHHHhcCccHHHHHHhhhhhhhhhcccccCCCCCCCCCCCCccCcCccccccccccCCCccchhhhhhh
Q 000432 829 ENGRIAQAGRFEELLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEIT 908 (1513)
Q Consensus 829 ~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 908 (1513)
++|+|+++|+|+|++++++.|.+++..+....+.....+ ....++.. .... ... ............. +.+
T Consensus 813 ~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~--~~~~--~~~-~~~~~~~~~~~~~---~~~ 882 (1622)
T PLN03130 813 HEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENG--EEEDDQTS--SKPV--ANG-NANNLKKDSSSKK---KSK 882 (1622)
T ss_pred eCCEEEEeCCHHHHHhcchhHHHHHHhcccccccccccc--cccccccc--cccc--ccc-ccccccccccccc---ccc
Confidence 999999999999999988889888765332111000000 00000000 0000 000 0000000000000 000
Q ss_pred hcCCCchhhhHhhhcccchHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHH
Q 000432 909 EKGGKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYT 988 (1513)
Q Consensus 909 ~~~~~~~~~e~~~~g~v~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~ 988 (1513)
.....+.++|+++.|.+++++|+.|+++.++.+.+.+++++.++.+++.+++++|++++.+.... .......|+++|+
T Consensus 883 ~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~--~~~~~~~~~~i~~ 960 (1622)
T PLN03130 883 EGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTP--KTHGPLFYNLIYA 960 (1622)
T ss_pred ccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CCCchhHHHHHHH
Confidence 11223566788899999999999999976665555566667777888899999999966553211 1222456788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHH
Q 000432 989 LLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQ 1068 (1513)
Q Consensus 989 ~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~ 1068 (1513)
+++++..++.+++.++....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.
T Consensus 961 ~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~ 1040 (1622)
T PLN03130 961 LLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQ 1040 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHH
Q 000432 1069 ILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLS 1148 (1513)
Q Consensus 1069 ~~~~l~v~~~~~~~l~lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~ 1148 (1513)
+++.++++++++|+.+++++|+.+++++++++|.++.|+++|++.++++|+++|+.|+++|+.|||+|+++++|.+.+.+
T Consensus 1041 ~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~ 1120 (1622)
T PLN03130 1041 LLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGR 1120 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHH
Confidence 99999999999998888888888888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1149 LIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGI-----INPSIAGLAVTYGINLNVLQASIIWNICNA 1223 (1513)
Q Consensus 1149 ~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~-----i~~g~~g~~l~y~~~l~~~l~~~~~~~~~l 1223 (1513)
..|.+.+..+.....++|+..++++++++++.++..+.+.. .+. ..++.+|++++|++.+...+.++++.+..+
T Consensus 1121 ~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~-~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~ 1199 (1622)
T PLN03130 1121 SMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQ-NGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLA 1199 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887666555443332 221 126889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHH
Q 000432 1224 ENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKS 1303 (1513)
Q Consensus 1224 e~~~~sveRi~e~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKS 1303 (1513)
|+.++|+||+.+|++.|+|++...++..+++.||.+|.|+|+||+|+|+++.++||+|+||+|+||||||||||||||||
T Consensus 1200 e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKS 1279 (1622)
T PLN03130 1200 ENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKS 1279 (1622)
T ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHH
Confidence 99999999999999999887654344456678999999999999999998877899999999999999999999999999
Q ss_pred HHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHh
Q 000432 1304 TLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRA 1383 (1513)
Q Consensus 1304 TLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~ 1383 (1513)
||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+|+|+||++|+++|+|++
T Consensus 1280 TLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~ 1359 (1622)
T PLN03130 1280 SMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRR 1359 (1622)
T ss_pred HHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhc
Q 000432 1384 KEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDS 1463 (1513)
Q Consensus 1384 lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~ 1463 (1513)
+|+||||+|+|+|.||||||||||||||||||+|+|||||||||+||.+||+.||++|++.+++||+|+||||++|+++|
T Consensus 1360 lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~ 1439 (1622)
T PLN03130 1360 NSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1439 (1622)
T ss_pred CccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCEEeEecChhHHHhcCChHHHHHHHHHhhc
Q 000432 1464 DLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMR 1501 (1513)
Q Consensus 1464 DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~~~~~~~ 1501 (1513)
|||+|||+|+|+|+|+|+||+++++|.|++|+++++..
T Consensus 1440 DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~~ 1477 (1622)
T PLN03130 1440 DRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAA 1477 (1622)
T ss_pred CEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcChh
Confidence 99999999999999999999998789999999988764
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-212 Score=2156.60 Aligned_cols=1349 Identities=33% Similarity=0.538 Sum_probs=1152.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCccccchhHHHHHHHH---HHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHH
Q 000432 119 FSSRIMQVVSWASTLFLLCKIIPNSAHVKFPWILRAWWFCS---FLFSILCTALHTYLRIRYRGQFRIQDYVDIIALLAS 195 (1513)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1513)
++.+++..++|+++..+...+++++ .++++.+++||++. +++.++......+ . ..... ..+..+.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~----~~~~~~~~~ 184 (1495)
T PLN03232 115 LMVEAFAWFSMLVLIGLETKQYVKE--FRWYVRFGVVYVLVADAVLLDLVLPLKNSI---N-RTALY----LCISSRCCQ 184 (1495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc--CCCCceeeehhHhhhhHHHHHHHHHHHHHH---h-ccccc----eehhHHHHH
Confidence 5667777788887777666777675 67899999999998 6666552111111 1 10001 123333333
Q ss_pred HHHHHHH-hccccccccccCCC-CCCCCccccccccccCCCCCCCCCCCChhHHHHHHhHHHHHHhhccCCCCCCCCCCC
Q 000432 196 TFLFGIS-IQGKTGLLLHTASS-DTTEPFLNVKADKQFKSKRDSPYGKSTLLQLVTFSWLNPLFAVGIKKPLELDDIPDV 273 (1513)
Q Consensus 196 ~~~~~~~-~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l 273 (1513)
+.+.+.. +.+++.++. +..+ ...+...+.+-+..+.+.+.+||++||+|||+||+|++|++++||+++|+.+|||+|
T Consensus 185 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L~~~dl~~l 263 (1495)
T PLN03232 185 ALFGILLLVYIPELDPY-PGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQL 263 (1495)
T ss_pred HHHHHHHHHhcccCCCC-CcccccccccccccccccccccCCCCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCC
Confidence 2222222 334433321 0000 000000000001223356789999999999999999999999999999999999999
Q ss_pred CccCcHHHHHHHHHHhHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchh
Q 000432 274 DIKDSAEFLSNRFEQDLDLVKEKEGSTNPSIYKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLE 353 (1513)
Q Consensus 274 ~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~ 353 (1513)
+++|+++.++++|++.|+++.++ ++++++++++++|++.++.++++.++.+++.+++|++++.+++++.+++. . +
T Consensus 264 ~~~~~~~~~~~~~~~~w~~~~~~---~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~-~-~ 338 (1495)
T PLN03232 264 DQWDQTETLIKRFQRCWTEESRR---PKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDP-A-W 338 (1495)
T ss_pred ChhhhHHHHHHHHHHHHHHhhcc---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-c-c
Confidence 99999999999999999876532 45899999999999999999999999999999999999999999975432 2 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 000432 354 SGYLLALAFLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYS 433 (1513)
Q Consensus 354 ~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~ 433 (1513)
.++.++++++++.++.+++.+++.+...+++.++|..++..+|+|.++++...+++.++|+++|+|++|++++.+++..+
T Consensus 339 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~~l 418 (1495)
T PLN03232 339 VGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQL 418 (1495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888888888888888888899999999999999999999999999999999999999999999999999899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchh
Q 000432 434 NYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWD 513 (1513)
Q Consensus 434 ~~~~~~pl~i~~~l~~L~~~lg~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E 513 (1513)
+.+|..|++++++++++|..+|++++++++++++++|++..+++++++.+++.++.+|+|.+.++|+++|||+||+|+||
T Consensus 419 ~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e 498 (1495)
T PLN03232 419 HGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWE 498 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999998888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 514 TRFLQKLESLRQVECIWLWKSLRLSATSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLL 593 (1513)
Q Consensus 514 ~~f~~~i~~~R~~E~~~~~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i 593 (1513)
+.+.+++++.|++|.+..++.....+...+++...|.++++++|++|.+.++.+|++.+|+++++++.+..|+..+|..+
T Consensus 499 ~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~ 578 (1495)
T PLN03232 499 KSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLL 578 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888887777777777888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccccccCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcH
Q 000432 594 SNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGK 673 (1513)
Q Consensus 594 ~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGK 673 (1513)
..+.++++|++||++|++.++...+... +.......|+++|++|+|+++.++++|+|+||+|++||+++|||++||||
T Consensus 579 ~~~~~a~~s~~Ri~~~L~~~~~~~~~~~--~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGK 656 (1495)
T PLN03232 579 SQVVNANVSLQRIEELLLSEERILAQNP--PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGK 656 (1495)
T ss_pred HHHHHHHHHHHHHHHHHcCccccccccC--CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcH
Confidence 9999999999999999987653221111 11112347999999999986445689999999999999999999999999
Q ss_pred HHHHHHHhcCccCCCcE-EEECCeEEEEcCCCcccCccHHHHHccCCCCCchHHHHHHHHHhcHHHHhhccCCCCccccC
Q 000432 674 SSLLSCILGEIQKMAGT-VKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGE 752 (1513)
Q Consensus 674 StLl~~llg~~~~~~G~-i~~~g~~ayv~Q~~~l~~~ti~eNI~fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige 752 (1513)
|||+++|+|+++|.+|. +.+.+.+|||||+||||++||||||+||+++++++|++++++|+|.+|++.+|+||+|+|||
T Consensus 657 STLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe 736 (1495)
T PLN03232 657 TSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGE 736 (1495)
T ss_pred HHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecC
Confidence 99999999999999974 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCe
Q 000432 753 RGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGR 832 (1513)
Q Consensus 753 ~g~~LSGGQkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~ 832 (1513)
+|.+|||||||||+||||+|++||||||||||||||+|++++++++++.+.+++||+|+||||+++++.||+|++|+||+
T Consensus 737 ~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~ 816 (1495)
T PLN03232 737 RGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGM 816 (1495)
T ss_pred CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCE
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred EEEecChHHHHhcCccHHHHHHhhhhhhhhhcccccCCCCCCCCCCCCccCcCccccccccccCCCccchhhhhhhhcCC
Q 000432 833 IAQAGRFEELLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGG 912 (1513)
Q Consensus 833 i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1513)
|+++|+|+|++++++.|.++++.+....+.... ........... ... +.. ..... ... ..+.+....
T Consensus 817 i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~-~~~---~~~-----~~~~~-~~~-~~~~~~~~~ 883 (1495)
T PLN03232 817 IKEEGTFAELSKSGSLFKKLMENAGKMDATQEV--NTNDENILKLG-PTV---TID-----VSERN-LGS-TKQGKRGRS 883 (1495)
T ss_pred EEEecCHHHHHhcchhHHHHHHhcccccccccc--ccccccccccc-ccc---ccc-----ccccc-ccc-ccccccchh
Confidence 999999999999988998887654321110000 00000000000 000 000 00000 000 000001112
Q ss_pred CchhhhHhhhcccchHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHH
Q 000432 913 KLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTV 992 (1513)
Q Consensus 913 ~~~~~e~~~~g~v~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~ 992 (1513)
.+.++|+++.|.+++++|+.|+++.++.+.+.+++++.++.+++.++.++|+++|.+.... .......|+++|+++++
T Consensus 884 ~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~--~~~~~~~~l~~y~~l~~ 961 (1495)
T PLN03232 884 VLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTP--KSYSPGFYIVVYALLGF 961 (1495)
T ss_pred hhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CCCCcchHHHHHHHHHH
Confidence 3567888999999999999999976665665566666777888889999999955443211 12234678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHH
Q 000432 993 GSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGT 1072 (1513)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~ 1072 (1513)
+..++.+++.++....+.++++++|++++++++++|++|||++|+|+|+||+++|++.+|..++..+..++..++.++++
T Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~ 1041 (1495)
T PLN03232 962 GQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLST 1041 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHh
Q 000432 1073 IGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDN 1152 (1513)
Q Consensus 1073 l~v~~~~~~~l~lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~ 1152 (1513)
+++++.+++...++++|+.+++++++.+|.++.|+++|.+..+++|+++|++|+++|+.|||+|+++++|.+++.+..|.
T Consensus 1042 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~ 1121 (1495)
T PLN03232 1042 FALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDN 1121 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHH
Confidence 98888888877777888888888888899999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1153 HSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGII-----NPSIAGLAVTYGINLNVLQASIIWNICNAENKM 1227 (1513)
Q Consensus 1153 ~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~i-----~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~ 1227 (1513)
+.+..+.....++|+..++++++.+++.++..+.+.. .+.+ .++.+|++++|+..+..++.++++.++++|+.+
T Consensus 1122 ~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~ 1200 (1495)
T PLN03232 1122 NIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLR-NGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSL 1200 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888999999999888766555544433321 2322 256788899999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHH
Q 000432 1228 ISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQ 1307 (1513)
Q Consensus 1228 ~sveRi~e~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~ 1307 (1513)
+|+||+.+|.+.|+|++...++..+++.||.+|.|+|+||+|+|+++.++||+|+||+|+||||||||||||||||||++
T Consensus 1201 ~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~ 1280 (1495)
T PLN03232 1201 NSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLN 1280 (1495)
T ss_pred HHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999999988865432333456679999999999999999887778999999999999999999999999999999
Q ss_pred HHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhcc
Q 000432 1308 AIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEK 1387 (1513)
Q Consensus 1308 lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~g 1387 (1513)
+|+|+|+|++|+|.|||+||+++++++||++|++|||||+||+||||+||||+++++|+|+|+||++|+++|+|+++|+|
T Consensus 1281 lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~G 1360 (1495)
T PLN03232 1281 ALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFG 1360 (1495)
T ss_pred HHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEE
Q 000432 1388 LDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVL 1467 (1513)
Q Consensus 1388 Ldt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIl 1467 (1513)
|||.|+|+|.||||||||||||||||||+|+|||||||||+||++||+.||++|++.+++||+|+||||++|+++||||+
T Consensus 1361 Ldt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIl 1440 (1495)
T PLN03232 1361 LDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKIL 1440 (1495)
T ss_pred CCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEeEecChhHHHhcCChHHHHHHHHHhhc
Q 000432 1468 VLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMR 1501 (1513)
Q Consensus 1468 VLd~G~IvE~Gtp~eLl~~~~~~f~~l~~~~~~~ 1501 (1513)
|||+|+|+|+|+|+||+++++|.|++|+++++..
T Consensus 1441 VL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~~ 1474 (1495)
T PLN03232 1441 VLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPA 1474 (1495)
T ss_pred EEECCEEEEECCHHHHHhCCCCHHHHHHHHhChh
Confidence 9999999999999999998778999999987754
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-208 Score=2127.64 Aligned_cols=1358 Identities=33% Similarity=0.582 Sum_probs=1156.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc-c-cchhHHHHHHHHH
Q 000432 117 LAFSSRIMQVVSWASTLFLLCKIIPNSAHVKFPWILRAWWFCSFLFSILCTALHTYLRIRYRGQ-F-RIQDYVDIIALLA 194 (1513)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 194 (1513)
..+..+++..++|++++++...++.++ .+.+..+.+||++.+++.++.+++....... +.. . ........+.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~e~~~~--~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 175 (1522)
T TIGR00957 99 VFLVSPTLLGITMLLATFLIQLERRKG--VQSSGIMLTFWLVALVCALAILRSKILLALK-EDAIVDPFRDTTFYIYFAL 175 (1522)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcc--cCCCcchhHHHHHHHHHHHHHHHHHHHHhhc-ccccccceehhhHHHHHHH
Confidence 345556778888888887777777664 5678899999999998888777655322110 000 0 0000111111111
Q ss_pred HHHHHHHHhccccccccccCCCCCCCCccccccccccCCCCCCCCCCCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCC
Q 000432 195 STFLFGISIQGKTGLLLHTASSDTTEPFLNVKADKQFKSKRDSPYGKSTLLQLVTFSWLNPLFAVGIKKPLELDDIPDVD 274 (1513)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~ 274 (1513)
..++++. .... ...|++. ........+||++||++||++|||+||++++|||++|+.+|||+++
T Consensus 176 ~~~~~~~----~~~~--------~~~~~~~----~~~~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~ 239 (1522)
T TIGR00957 176 VLSQLVL----SCFS--------DKSPLFS----ETNHDPNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLN 239 (1522)
T ss_pred HHHHHHH----Hhhc--------CCCCccc----cccccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCC
Confidence 1111111 1100 1123321 1012234689999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhHHHHHhhc--------------------------------------CCCCchhHHHHHHHHHHHH
Q 000432 275 IKDSAEFLSNRFEQDLDLVKEKE--------------------------------------GSTNPSIYKAIFFFIRKKA 316 (1513)
Q Consensus 275 ~~~~~~~~~~~f~~~w~~~~~~~--------------------------------------~~~~~~l~~~l~~~~~~~~ 316 (1513)
++++++.++++|++.|+++.++. ..++++++++++++||+.+
T Consensus 240 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~ 319 (1522)
T TIGR00957 240 KEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYF 319 (1522)
T ss_pred HhHhHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHHHHHHhHHH
Confidence 99999999999999998763210 1234789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 317 AINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRLRAALISHLY 396 (1513)
Q Consensus 317 ~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy 396 (1513)
+..+++.++.+++.+++|++++.+++++.++.... +.||.++++++++.++.+++.+++.+...+++.++|.+|+..+|
T Consensus 320 l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy 398 (1522)
T TIGR00957 320 LMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPD-WQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVY 398 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987654333 56888888888888899999999999999999999999999999
Q ss_pred HHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 397 RKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTCNIPIT 476 (1513)
Q Consensus 397 ~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~~~l~~L~~~lg~~~l~~l~~~~~~~~~~~~~~ 476 (1513)
+|+|+++..+++++++|+++|+|++|++++.++..++|.+|..|++++++++++|..+|++++++++++++++|++..++
T Consensus 399 ~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~ 478 (1522)
T TIGR00957 399 RKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMA 478 (1522)
T ss_pred HHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 477 RIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWGSPTFISVVT 556 (1513)
Q Consensus 477 ~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~~~~~~~~p~~v~~~~ 556 (1513)
+..++.++++++.+|+|++.++|+++|||+||+|+||+.|.+++++.|++|++..++..+......+.+...|.++.+++
T Consensus 479 ~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1522)
T TIGR00957 479 MKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALIT 558 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888877777778898888899
Q ss_pred HHHHHHh--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCC-CCCcceEE
Q 000432 557 FGACMLL--GIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPK-GRSEFEVE 633 (1513)
Q Consensus 557 f~~~~~~--~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~-~~~~~~I~ 633 (1513)
|++|.+. ++.++++.+|+++++++++..|+..+|..+..+.++++|++||++|++.++.++...+.... ......|+
T Consensus 559 f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 638 (1522)
T TIGR00957 559 FAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSIT 638 (1522)
T ss_pred HHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEE
Confidence 9998877 46799999999999999999999999999999999999999999999877654321111111 11123799
Q ss_pred EEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCeEEEEcCCCcccCccHHH
Q 000432 634 VVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRE 713 (1513)
Q Consensus 634 ~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~~ayv~Q~~~l~~~ti~e 713 (1513)
++|++|+|+++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|.+|+|.++|.+|||||+||++++||+|
T Consensus 639 ~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~e 717 (1522)
T TIGR00957 639 VHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRE 717 (1522)
T ss_pred EEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHH
Confidence 99999999743 35899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHH
Q 000432 714 NILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGT 793 (1513)
Q Consensus 714 NI~fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~illLDep~salD~~~~~ 793 (1513)
||+||.++++++|++++++|++.+|++.+|+||+|++||+|.+|||||||||+||||+|++|+||||||||||||+++++
T Consensus 718 NI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~ 797 (1522)
T TIGR00957 718 NILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 797 (1522)
T ss_pred HhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH--hhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhcCccHHHHHHhhhhhhhhhccccc-C-
Q 000432 794 QLFKDCL--MGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGAHSQALESVLTVET-S- 869 (1513)
Q Consensus 794 ~i~~~~~--~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~-~- 869 (1513)
++++.++ .+.++++|+|+|||++++++.||+|++|++|++++.|+++++.++++.|.++...+....+.....+. .
T Consensus 798 ~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 877 (1522)
T TIGR00957 798 HIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTA 877 (1522)
T ss_pred HHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhccccccccccccccc
Confidence 9999887 35678999999999999999999999999999999999999999888888887644321110000000 0
Q ss_pred ---CCCCCCCCCCC--------ccCcCc----cccccccccCC--CccchhhhhhhhcCCCchhhhHhhhcccchHHHHH
Q 000432 870 ---SRTSQDPTPES--------ELNSDS----TSNVKLVHSQH--DSEHELSLEITEKGGKLVQEEEREKGSIGKEVYWS 932 (1513)
Q Consensus 870 ---~~~~~~~~~~~--------~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~~~~ 932 (1513)
....+....+. +..... ........... +.......+.++...+..++|+++.|.+++++|+.
T Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~ 957 (1522)
T TIGR00957 878 LVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWD 957 (1522)
T ss_pred cccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHH
Confidence 00000000000 000000 00000000000 00000000000112345677888899999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 933 YLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRT 1012 (1513)
Q Consensus 933 y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~ 1012 (1513)
|+++. |+..+++++++.++.+++.++.++|++|+.+......+......|+++|++++++..++.+++.++....+.++
T Consensus 958 Y~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~ 1036 (1522)
T TIGR00957 958 YMKAI-GLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQA 1036 (1522)
T ss_pred HHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99965 44444455556667788889999999966553211111222346777999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000432 1013 AQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTG 1092 (1513)
Q Consensus 1013 s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv~ip~~~ 1092 (1513)
++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++.+|+++++++|+++
T Consensus 1037 ~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~ 1116 (1522)
T TIGR00957 1037 SRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGL 1116 (1522)
T ss_pred HHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q 000432 1093 ICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLN 1172 (1513)
Q Consensus 1093 l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~ 1172 (1513)
++++++++|.+++|+++|++.++++|+++|+.|+++|+.|||+|++|++|.+++.+..|...++.+.....++|+..+++
T Consensus 1117 ~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1196 (1522)
T TIGR00957 1117 LYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLE 1196 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCC
Q 000432 1173 LLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRP 1252 (1513)
Q Consensus 1173 ~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~~~~~~~ 1252 (1513)
+++.+++.++..+.+ ...|.+++|.+|++++|+.++..++.++++.++++|+.++|+||+.+|.+.|+|++...++..+
T Consensus 1197 ~~~~~~~~~~~~~~v-~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~ 1275 (1522)
T TIGR00957 1197 CVGNCIVLFAALFAV-ISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAP 1275 (1522)
T ss_pred HHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCC
Confidence 988765544444333 2357899999999999999999999999999999999999999999999988876533334456
Q ss_pred CCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCh
Q 000432 1253 PSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGL 1332 (1513)
Q Consensus 1253 ~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l 1332 (1513)
++.||.+|.|+|+||+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+|+|++|+|.|||+||+++++
T Consensus 1276 ~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~ 1355 (1522)
T TIGR00957 1276 PSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGL 1355 (1522)
T ss_pred CCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCH
Confidence 67899999999999999999877789999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhceEEEcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHH
Q 000432 1333 HDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRT 1412 (1513)
Q Consensus 1333 ~~LR~~isiVpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARA 1412 (1513)
++||++|++|||||+||+||||+||||+++++|||+|+||++|+++++|.++|+||||+|+|+|.|||||||||+|||||
T Consensus 1356 ~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARA 1435 (1522)
T TIGR00957 1356 HDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARA 1435 (1522)
T ss_pred HHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhcCChHHH
Q 000432 1413 LLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFS 1492 (1513)
Q Consensus 1413 LLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~ 1492 (1513)
|||+|+|||||||||+||.+||+.||++|++.+++||||+||||++|+++||||+|||+|+|+|+|+|+||+++ +|.|+
T Consensus 1436 LLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~ 1514 (1522)
T TIGR00957 1436 LLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFY 1514 (1522)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 69999
Q ss_pred HHHHHH
Q 000432 1493 QLIKEY 1498 (1513)
Q Consensus 1493 ~l~~~~ 1498 (1513)
+|+++.
T Consensus 1515 ~l~~~~ 1520 (1522)
T TIGR00957 1515 SMAKDA 1520 (1522)
T ss_pred HHHHHc
Confidence 999875
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-198 Score=2019.06 Aligned_cols=1254 Identities=28% Similarity=0.463 Sum_probs=1092.2
Q ss_pred CCCCCCCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHhHHHHHhhcCCCCchhHHHHHHHHHHH
Q 000432 236 DSPYGKSTLLQLVTFSWLNPLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLDLVKEKEGSTNPSIYKAIFFFIRKK 315 (1513)
Q Consensus 236 ~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~l~~~l~~~~~~~ 315 (1513)
.+||++||+|||+||||++|++++||+++|+.+|||+|+++++++.++++|++.|+++..++ .++++++++++++|++.
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~L~~~l~~~~~~~ 81 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASA-KKNPKLLNALRRCFFWR 81 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999998765322 35689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 316 AAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRLRAALISHL 395 (1513)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i 395 (1513)
+++.+++.++.+++.+++|++++.+|++++.......+.+|.++++++++.++.+++.+++.|...++++++|.+|+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~i 161 (1490)
T TIGR01271 82 FVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLI 161 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998543222224688888889999999999999999999999999999999999
Q ss_pred HHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 396 YRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTCNIPI 475 (1513)
Q Consensus 396 y~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~~~l~~L~~~lg~~~l~~l~~~~~~~~~~~~~ 475 (1513)
|+|+|+++..++++.++|+++|+|++|++++.+++.++|.+|..|+++++++++||..+|+++++++++++++++++.++
T Consensus 162 y~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~ 241 (1490)
T TIGR01271 162 YKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACL 241 (1490)
T ss_pred HHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 476 TRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWGSPTFISVV 555 (1513)
Q Consensus 476 ~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~~~~~~~~p~~v~~~ 555 (1513)
++++.++++++|+.+|+|++.++|+++|||+||+|+||+.|.+++++.|+.|++..++..+......++++..|.+++++
T Consensus 242 ~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1490)
T TIGR01271 242 GQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFL 321 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888888889999999
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCCcceEEE
Q 000432 556 TFGACMLLGIQLTAGRVLSALATFRMLQDPIF-NLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEV 634 (1513)
Q Consensus 556 ~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~-~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~~I~~ 634 (1513)
+|++|.+.++ ++++.+|+++++|++++.|+. .+|..+..+.++++|++||++||+.+|.+..... .....|++
T Consensus 322 ~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~-----~~~~~i~~ 395 (1490)
T TIGR01271 322 SVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYN-----LTTTEVEM 395 (1490)
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccc-----CCCCceEE
Confidence 9999988754 789999999999999999985 7999999999999999999999988765432110 12236999
Q ss_pred EeEEEEeCCC-------------------------------CCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcC
Q 000432 635 VNGKFSWNPE-------------------------------SSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 635 ~~~sf~~~~~-------------------------------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~ 683 (1513)
+|++|+|+.. ..+++|+|+||+|++|++++|+|||||||||||++|+|+
T Consensus 396 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~ 475 (1490)
T TIGR01271 396 VNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE 475 (1490)
T ss_pred ecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 9999999631 014689999999999999999999999999999999999
Q ss_pred ccCCCcEEEECCeEEEEcCCCcccCccHHHHHccCCCCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHH
Q 000432 684 IQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQ 763 (1513)
Q Consensus 684 ~~~~~G~i~~~g~~ayv~Q~~~l~~~ti~eNI~fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkq 763 (1513)
++|.+|+|.++|.+|||+|+||+|++||+|||+||.++++++|++++++|+|.+|++.+|+||+|+|||+|.+|||||||
T Consensus 476 ~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkq 555 (1490)
T TIGR01271 476 LEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRA 555 (1490)
T ss_pred CCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHH
Q 000432 764 RIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELL 843 (1513)
Q Consensus 764 Ri~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~ 843 (1513)
||+||||+|++|+||||||||||||++++++++++|+.+.++++|+|+|||+++.++.||+|++|++|++++.|+++++.
T Consensus 556 Ri~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 556 RISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999998888888899999999999999999999999999999999999999
Q ss_pred hcCccHHHHHHhhhhhhh---h--------------hc--c-----cccC------CCCC--CC---------C------
Q 000432 844 KQNIGFEVLVGAHSQALE---S--------------VL--T-----VETS------SRTS--QD---------P------ 876 (1513)
Q Consensus 844 ~~~~~~~~l~~~~~~~~~---~--------------~~--~-----~~~~------~~~~--~~---------~------ 876 (1513)
+.+..|.+.+.......+ . .+ . .+.. +... +. .
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1490)
T TIGR01271 636 AKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARKF 715 (1490)
T ss_pred hcChHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 877777666531110000 0 00 0 0000 0000 00 0
Q ss_pred --------CC---CCccCcCccc----------------cccc-------------c--------cc----CCCcc----
Q 000432 877 --------TP---ESELNSDSTS----------------NVKL-------------V--------HS----QHDSE---- 900 (1513)
Q Consensus 877 --------~~---~~~~~~~~~~----------------~~~~-------------~--------~~----~~~~~---- 900 (1513)
.. ..+...++.. .... . .. .+.+.
T Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1490)
T TIGR01271 716 SFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQTS 795 (1490)
T ss_pred ccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence 00 0000000000 0000 0 00 00000
Q ss_pred --------------ch--h-----hhh----------hhhcCCCchhhhHhhhcccchHHHHHHHHhhhhhhHHHHHHHH
Q 000432 901 --------------HE--L-----SLE----------ITEKGGKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLA 949 (1513)
Q Consensus 901 --------------~~--~-----~~~----------~~~~~~~~~~~e~~~~g~v~~~~~~~y~~~~~~~~~~~~~~l~ 949 (1513)
.. . ..+ +.....++.++|+++.|.++|++|+.|++..+++..+.+++++
T Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~~~ 875 (1490)
T TIGR01271 796 FRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCLV 875 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHHHH
Confidence 00 0 000 0000123466788889999999999999976554555555666
Q ss_pred HHHHHHHHHhhhhhhc-ccCCC-----CCCCCC------------CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 950 QSSFQVLQVASNYWMA-WASPP-----TSDGEP------------ALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLR 1011 (1513)
Q Consensus 950 ~~~~~~~~~~~~~~l~-~~~~~-----~~~~~~------------~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~ 1011 (1513)
.++.+++..+.++|+. |+.+. ...... .....+++++|+++.++..++.+++.+++...+.+
T Consensus 876 ~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1490)
T TIGR01271 876 IFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLT 955 (1490)
T ss_pred HHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999998 54321 000000 01112225566666666777888899999999999
Q ss_pred HHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000432 1012 TAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVT 1091 (1513)
Q Consensus 1012 ~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv~ip~~ 1091 (1513)
+++++|.+++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++.+|+++++++|++
T Consensus 956 ~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~ 1035 (1490)
T TIGR01271 956 VSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVA 1035 (1490)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 000432 1092 GICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRL 1171 (1513)
Q Consensus 1092 ~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l 1171 (1513)
+++++++++|.+++|+++|++..+++|+++|+.|+++|+.|||+|+++++|.+++.+..|.+.+.++.....++|+..++
T Consensus 1036 ~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~ 1115 (1490)
T TIGR01271 1036 VIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRI 1115 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccc---
Q 000432 1172 NLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTE--- 1248 (1513)
Q Consensus 1172 ~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~~~--- 1248 (1513)
++++.+.+..++++.+. ...+++|.+|++++|++.+...+.++++.++++++.+.|+||+.+|.+.|+|++...+
T Consensus 1116 ~~i~~~~~~~~~~l~~~--~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~ 1193 (1490)
T TIGR01271 1116 DIIFVFFFIAVTFIAIG--TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGG 1193 (1490)
T ss_pred HHHHHHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccc
Confidence 99876554443333222 2346788899999999999999999999999999999999999999998887542211
Q ss_pred -----------CCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCC
Q 000432 1249 -----------ECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTM 1317 (1513)
Q Consensus 1249 -----------~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~ 1317 (1513)
...+++.||..|.|+|+||+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+++ ++
T Consensus 1194 ~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~ 1272 (1490)
T TIGR01271 1194 KYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TE 1272 (1490)
T ss_pred ccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CC
Confidence 123456799999999999999999877889999999999999999999999999999999999998 79
Q ss_pred cEEEEcCeeCCCCChHHhhhceEEEcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCC
Q 000432 1318 GSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGE 1397 (1513)
Q Consensus 1318 G~I~IDGvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~ 1397 (1513)
|+|+|||+||++++++++|++|++|||||+||+||||+||||+++++|+|+|+||++|+++++|+++|+||||+|+|+|.
T Consensus 1273 G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~ 1352 (1490)
T TIGR01271 1273 GEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGY 1352 (1490)
T ss_pred cEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEe
Q 000432 1398 NWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEY 1477 (1513)
Q Consensus 1398 nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~ 1477 (1513)
||||||||||||||||||+|+|||||||||+||.+||+.||++|++.+++||||+||||++|+++||||+|||+|+|+|+
T Consensus 1353 nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~ 1432 (1490)
T TIGR01271 1353 VLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQY 1432 (1490)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHhcCChHHHHHHHHHhh
Q 000432 1478 DSPTKLLEREDSFFSQLIKEYSM 1500 (1513)
Q Consensus 1478 Gtp~eLl~~~~~~f~~l~~~~~~ 1500 (1513)
|+|++|+++ +|.|++|++++..
T Consensus 1433 g~p~~Ll~~-~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1433 DSIQKLLNE-TSLFKQAMSAADR 1454 (1490)
T ss_pred CCHHHHHcC-CcHHHHHHHHhCh
Confidence 999999985 8999999998775
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-189 Score=1929.86 Aligned_cols=1258 Identities=30% Similarity=0.490 Sum_probs=1084.0
Q ss_pred CCCCCCCCCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHhHHHHHhhc----------------
Q 000432 234 KRDSPYGKSTLLQLVTFSWLNPLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLDLVKEKE---------------- 297 (1513)
Q Consensus 234 ~~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~---------------- 297 (1513)
..+.||++||||.++++.|++|.+.+..|..|+.+|+|+...+.|+-++..++.+..++...+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1560)
T PTZ00243 57 YTPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLD 136 (1560)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecc
Confidence 3457999999999999999999999999999999999999999998777666655433222110
Q ss_pred --------------------------------------------------------------------------------
Q 000432 298 -------------------------------------------------------------------------------- 297 (1513)
Q Consensus 298 -------------------------------------------------------------------------------- 297 (1513)
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (1560)
T PTZ00243 137 ASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSS 216 (1560)
T ss_pred ccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecc
Confidence
Q ss_pred -----------CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHH
Q 000432 298 -----------GSTNPSIYKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAK 366 (1513)
Q Consensus 298 -----------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~ 366 (1513)
.++..++++++++++|+.++..++++++.+++.+++|++++.++++++++.. ....++.++++++++.
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~-~~~~g~~l~~~l~~~~ 295 (1560)
T PTZ00243 217 TGSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNA-TWGRGLGLVLTLFLTQ 295 (1560)
T ss_pred cccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-chhHHHHHHHHHHHHH
Confidence 0112379999999999999999999999999999999999999999965433 2245788888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 367 MVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQ--SHTSGEIINYMSVDVQRISDFIFYSNYMFMLPVQIS 444 (1513)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~--~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~ 444 (1513)
++.+++.+++.+...+.+.++|.+|...+|+|+++++..... +.++|+++|+|++|++++.+++.++|.+|..|++++
T Consensus 296 ~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li 375 (1560)
T PTZ00243 296 LIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLL 375 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987665 568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHH
Q 000432 445 LAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLR 524 (1513)
Q Consensus 445 ~~l~~L~~~lg~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R 524 (1513)
+++++||..+|+++++|++++++++|++.++++++.++++++|+.+|+|++.++|+++|||+||+++||+.|.+++++.|
T Consensus 376 ~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R 455 (1560)
T PTZ00243 376 LSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKR 455 (1560)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 525 QVECIWLWKSLRLSATSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSAD 604 (1513)
Q Consensus 525 ~~E~~~~~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~ 604 (1513)
++|++.+++..+..++..++++..|.++.+++|++|.+.++.||++.+|+++++|++++.|+.++|..++.+.++++|++
T Consensus 456 ~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~ 535 (1560)
T PTZ00243 456 ARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIK 535 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccccc----c-----------------------------ccC-------------------------CC
Q 000432 605 RIAAYLQEDEIQRDAV----E-----------------------------YVP-------------------------KG 626 (1513)
Q Consensus 605 RI~~fL~~~e~~~~~~----~-----------------------------~~~-------------------------~~ 626 (1513)
||++||+.+|...+.. + ..+ ..
T Consensus 536 RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (1560)
T PTZ00243 536 RISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKR 615 (1560)
T ss_pred HHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccc
Confidence 9999998765211000 0 000 00
Q ss_pred CCcceEEEEeEEEEeCCC-------------------------------------CCCCcccceeEEEeCCcEEEEEecC
Q 000432 627 RSEFEVEVVNGKFSWNPE-------------------------------------SSSPTLDGIQLKVKRGMKVAICGTV 669 (1513)
Q Consensus 627 ~~~~~I~~~~~sf~~~~~-------------------------------------~~~~~L~~i~l~i~~G~~~~ivG~~ 669 (1513)
.....+.++|++|+|+.. .++++|+|+||+|++|++++|+|+|
T Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~n 695 (1560)
T PTZ00243 616 HPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGAT 695 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCC
Confidence 011246677777775410 1246899999999999999999999
Q ss_pred CCcHHHHHHHHhcCccCCCcEEEECCeEEEEcCCCcccCccHHHHHccCCCCCchHHHHHHHHHhcHHHHhhccCCCCcc
Q 000432 670 GSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTE 749 (1513)
Q Consensus 670 GsGKStLl~~llg~~~~~~G~i~~~g~~ayv~Q~~~l~~~ti~eNI~fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~ 749 (1513)
|||||||+++|+|+++|++|+|.+++.+|||||+||++++||+|||+|+.++++++|++++++|++.+|++.+|+|++|.
T Consensus 696 GsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~ 775 (1560)
T PTZ00243 696 GSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETE 775 (1560)
T ss_pred CCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHH
Confidence 99999999999999999999999999999999999999999999999999888889999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEe
Q 000432 750 IGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVME 829 (1513)
Q Consensus 750 Ige~g~~LSGGQkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~ 829 (1513)
+|++|.+|||||||||+||||+|++|+|||||||||+||++++++++++++.+.++++|+|+|||+++.++.||+|++|+
T Consensus 776 i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~ 855 (1560)
T PTZ00243 776 IGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALG 855 (1560)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999998877778999999999999999999999999
Q ss_pred CCeEEEecChHHHHhcCccHHHHHHhhhhhhhhhcccccCCCCCCCCCCCCccCcCccccccccccCCCccchhhhhhhh
Q 000432 830 NGRIAQAGRFEELLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITE 909 (1513)
Q Consensus 830 ~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1513)
+|++++.|+++++++.. .|.++........+..+.....+.. ..... ....... ......+....+... ......
T Consensus 856 ~G~i~~~G~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~ 930 (1560)
T PTZ00243 856 DGRVEFSGSSADFMRTS-LYATLAAELKENKDSKEGDADAEVA-EVDAA-PGGAVDH-EPPVAKQEGNAEGGD-GAALDA 930 (1560)
T ss_pred CCEEEEecCHHHHHhCh-HHHHHHHhhcccccccccccccccc-ccccc-ccccccc-ccccccccccccccc-cccccc
Confidence 99999999999998753 5666654321111000000000000 00000 0000000 000000000000000 000011
Q ss_pred cCCCchhhhHhhhcccchHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHH
Q 000432 910 KGGKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTL 989 (1513)
Q Consensus 910 ~~~~~~~~e~~~~g~v~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~ 989 (1513)
...++.++|+++.|.++|++|+.|++..++...+.+++++.++.+++..+.++|+++|.+... ......|+++|++
T Consensus 931 ~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~----~~~~~~~l~~y~~ 1006 (1560)
T PTZ00243 931 AAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSF----KLSAATYLYVYLG 1006 (1560)
T ss_pred ccchhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----CCCcccHHHHHHH
Confidence 223566778888999999999999997665555555555566778888899999995443321 1223457788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHH
Q 000432 990 LTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQI 1069 (1513)
Q Consensus 990 l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~ 1069 (1513)
+.++..++.+++.+.....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+
T Consensus 1007 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~ 1086 (1560)
T PTZ00243 1007 IVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSI 1086 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHH
Q 000432 1070 LGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSL 1149 (1513)
Q Consensus 1070 ~~~l~v~~~~~~~l~lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~ 1149 (1513)
++.++++++.+|.++++++|+.++++++.++|.+..|+++|....+++|++++++|+++|+.|||+|++|++|.+++.+.
T Consensus 1087 i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~ 1166 (1560)
T PTZ00243 1087 CSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRR 1166 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHH
Confidence 99999999999988888888888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1150 IDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLV---TLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENK 1226 (1513)
Q Consensus 1150 ~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~---~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~ 1226 (1513)
.|.+.+..+.....++|+..++++++++++.+.+++.+ ....+.+++|.++++++|+.++..++.++++.+.++|+.
T Consensus 1167 ~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~ 1246 (1560)
T PTZ00243 1167 LDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEAD 1246 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998876554444332 223455789999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC-CCCCCCCc-----------------------ccCCCCC---CCCCCCceEEEEEEEEEEcCCCCcce
Q 000432 1227 MISVERILQYSN-LPSEAPLV-----------------------TEECRPP---SNWPDVGTISFHNLQIRYAEHLPSVL 1279 (1513)
Q Consensus 1227 ~~sveRi~e~~~-~~~e~~~~-----------------------~~~~~~~---~~wp~~g~I~f~nvsf~Y~~~~~~vL 1279 (1513)
++|+||+.+|++ .|+|+... .+...++ +.||..|.|+|+||+|+|+++.++||
T Consensus 1247 ~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL 1326 (1560)
T PTZ00243 1247 MNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVL 1326 (1560)
T ss_pred HHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCcee
Confidence 999999999996 34332110 0011122 23557799999999999998878899
Q ss_pred eeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEcCCCccccCcHhhccCC
Q 000432 1280 KNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDP 1359 (1513)
Q Consensus 1280 k~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp 1359 (1513)
+||||+|+||||||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+||||
T Consensus 1327 ~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp 1406 (1560)
T PTZ00243 1327 RGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDP 1406 (1560)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccC-CCEEEEecCCCCCCHHHHHHHH
Q 000432 1360 LVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKK-SSILVLDEATASVDSATDGVIQ 1438 (1513)
Q Consensus 1360 ~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~-~~ILiLDEaTSslD~~Te~~Iq 1438 (1513)
+++++|+|||+||++|+++++|.++|+||||.|+|+|.|||||||||||||||||++ |+|||||||||+||++||+.||
T Consensus 1407 ~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq 1486 (1560)
T PTZ00243 1407 FLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQ 1486 (1560)
T ss_pred ccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996 8999999999999999999999
Q ss_pred HHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhcCChHHHHHHHHHhhc
Q 000432 1439 KIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMR 1501 (1513)
Q Consensus 1439 ~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~~~~~~~ 1501 (1513)
++|++.+++||||+||||++|+++||+|+|||+|+|+|+|+|+||+++++|.|++|+++.+..
T Consensus 1487 ~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~~ 1549 (1560)
T PTZ00243 1487 ATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRS 1549 (1560)
T ss_pred HHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChh
Confidence 999999999999999999999999999999999999999999999997789999999987653
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-156 Score=1480.85 Aligned_cols=1103 Identities=22% Similarity=0.285 Sum_probs=834.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000432 374 RQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYS-NYMFMLPVQISLAIYILRT 452 (1513)
Q Consensus 374 ~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~-~~~~~~pl~i~~~l~~L~~ 452 (1513)
..|.+...|...++| ....+..||....+++.+.+|++.+.|+.|+++|++.+..- ..+......++.++.+-+.
T Consensus 93 ~c~~~~geRq~~riR----~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~ 168 (1228)
T KOG0055|consen 93 SCWMRTGERQTARIR----SKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFY 168 (1228)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344544445555555 55566667778888998999999999999999999987532 1111111122222222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Q 000432 453 NLGLGSLAALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLW 532 (1513)
Q Consensus 453 ~lg~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~ 532 (1513)
.-...+++.+.+.+++......+++.+.+...+.+++..+--+...|.+.+||++-.|+-|+...++..+.-+.-.+...
T Consensus 169 ~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi 248 (1228)
T KOG0055|consen 169 YGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGI 248 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 11123455566666666667777888888888888888888899999999999999999999988888765554444433
Q ss_pred HHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000432 533 KSLRLSATSA-FI-FWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYL 610 (1513)
Q Consensus 533 ~~~~~~~~~~-~~-~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL 610 (1513)
+......+.. +. ++........++||..++..+..++|.+++.+...-+-...+.+....+..+..|++|..+|.+.+
T Consensus 249 ~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i 328 (1228)
T KOG0055|consen 249 KKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETI 328 (1228)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHh
Confidence 3333333322 22 222234456678888888888999999998886666666677777778899999999999999998
Q ss_pred cccc-cccccccccCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCc
Q 000432 611 QEDE-IQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAG 689 (1513)
Q Consensus 611 ~~~e-~~~~~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G 689 (1513)
+..+ .+.............+.|+|+||+|+||..++.++|+|+||+|++|+.+|+||+|||||||++++|.|+|+|++|
T Consensus 329 ~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G 408 (1228)
T KOG0055|consen 329 DRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSG 408 (1228)
T ss_pred cCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCc
Confidence 7543 333221222333456789999999999988778999999999999999999999999999999999999999999
Q ss_pred EEEECCe-------------EEEEcCCCcccCccHHHHHccCCCC-CchHHHHHHHHHhcHHHHhhccCCCCccccCCCC
Q 000432 690 TVKISGT-------------KAYVPQSPWILTGNIRENILFGNQY-DSCKYDRTVEACALVKDFELFASGDLTEIGERGI 755 (1513)
Q Consensus 690 ~i~~~g~-------------~ayv~Q~~~l~~~ti~eNI~fg~~~-~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~ 755 (1513)
+|.+||. +|.|.|+|-+|++||+|||+||+|. +.++..++++++...+.+..||+|++|.+||+|.
T Consensus 409 ~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~ 488 (1228)
T KOG0055|consen 409 EVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV 488 (1228)
T ss_pred eEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC
Confidence 9999983 5999999999999999999999975 4566777777777788899999999999999999
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEE
Q 000432 756 NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQ 835 (1513)
Q Consensus 756 ~LSGGQkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~ 835 (1513)
.|||||||||||||||.+||+||||||||||||++. +++.+++++...+|||.|+||||++++++||+|++|++|+|+|
T Consensus 489 qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~s-e~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE 567 (1228)
T KOG0055|consen 489 QLSGGQKQRIAIARALVRNPKILLLDEATSALDAES-ERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVE 567 (1228)
T ss_pred CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHH-HHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998 5566899999999999999999999999999999999999999
Q ss_pred ecChHHHHhcCccHHHHHHhhhhhhhhhcccccCCCCCCCCCCCCccCcCccccccccccCCCccchhhhhhhhcCCCch
Q 000432 836 AGRFEELLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGGKLV 915 (1513)
Q Consensus 836 ~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 915 (1513)
.|+|+||++.+|.|.++++.+.......+..+..+.. +.... +.....+..... +............+.++.....
T Consensus 568 ~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~-~~~~~-s~~~s~~~~~~~-~~~~~~~~~~~~~~~e~~~~~~- 643 (1228)
T KOG0055|consen 568 QGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLK-EERSR-SLKSSSSSPSLS-RGSNRSNLLSVKPEGEDPEEPV- 643 (1228)
T ss_pred ecCHHHHHhccchHHHHHHHHhhhhhhhccccccchh-hhhhh-cccccccccccc-CCcccccccccccccccccccc-
Confidence 9999999999999999998875433211100000000 00000 000000000000 0000000000000000000011
Q ss_pred hhhHhhhcccchHHHHHHHHhhhhhhHHHHHHHHHHHH----HHHHHhhhhhhc-ccCCCCCCCCCCchhhHHHHHHHHH
Q 000432 916 QEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSF----QVLQVASNYWMA-WASPPTSDGEPALGMNIVLLVYTLL 990 (1513)
Q Consensus 916 ~~e~~~~g~v~~~~~~~y~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~vy~~l 990 (1513)
.+++ -.+++....+|.++. |.++.+.+++.++. .++.+.....+. +..++.. .-......|.++|+++
T Consensus 644 ~~~~---~~~s~~~i~k~~~pe--~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~--~~~~~~~~~al~f~~l 716 (1228)
T KOG0055|consen 644 SEED---EKVSFWRIFKLNKPE--WPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDD--ELKREVRAWALIFLGL 716 (1228)
T ss_pred cccc---ccccHHHHHHhccch--hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChH--HHHHHHHHHHHHHHHH
Confidence 1111 234444444554442 22222222222222 222222233333 2211100 0111234588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccc--cChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHH
Q 000432 991 TVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDS--TPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQ 1068 (1513)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~--~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~ 1068 (1513)
++++.++.+++.+++.+.|.+..+++|.++|+++++.++.|||. +. |+|.+|+.+|...+...+...+..++.++..
T Consensus 717 ~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~ 795 (1228)
T KOG0055|consen 717 GIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAA 795 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999995 56 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHH
Q 000432 1069 ILGTIGVMSQVAWQVFVIFI---PVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNA 1145 (1513)
Q Consensus 1069 ~~~~l~v~~~~~~~l~lv~i---p~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~ 1145 (1513)
++..+++.++++|.++++++ |++++..+.+.++.... .+..............|++++++||++|+.|++|.+.
T Consensus 796 ~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~---~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~ 872 (1228)
T KOG0055|consen 796 VIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGF---SKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMEL 872 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHH
Confidence 99999999999999988654 55555555555444332 2222222334456789999999999999999999999
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1146 NLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVL-VTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAE 1224 (1513)
Q Consensus 1146 ~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~-~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le 1224 (1513)
+.+.++...+..+..........-.-+.+..++.+++..+. .++.+|.+++..+...+.-...-...+........+.-
T Consensus 873 y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ 952 (1228)
T KOG0055|consen 873 YKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDIS 952 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHH
Confidence 99988887776655443322222222222222223333332 33567888887765555444433444555666777888
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCceEEEEEEEEEEcCCC-CcceeeeeEEeeCCcEEEEEcCCCCCHH
Q 000432 1225 NKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHL-PSVLKNISCTFPGRKKVGVVGRTGSGKS 1303 (1513)
Q Consensus 1225 ~~~~sveRi~e~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~-~~vLk~is~~I~~GekvgIVGrTGSGKS 1303 (1513)
.+..|+.+++++++.+++-+...+.. ....+.+|+|+|+||+|+||... .+||+|+|++|++||++|+|||||||||
T Consensus 953 ka~~Aa~~iF~i~dr~~~i~~~~~~~--~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKS 1030 (1228)
T KOG0055|consen 953 KAKIAAGSIFEILDRKPTIDPDSTSG--GKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKS 1030 (1228)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCC--CccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHH
Confidence 99999999999998776432211111 11124689999999999996431 2699999999999999999999999999
Q ss_pred HHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEcCCCccccCcHhhccCCC-CCCCHHHHHHHHHHcCCcHHHH
Q 000432 1304 TLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPL-VQYSDKQVWEALDKCQLGDLVR 1382 (1513)
Q Consensus 1304 TLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~-~~~sdeei~~aL~~~~l~~~I~ 1382 (1513)
|++.+|.|+|+|.+|.|.|||+||+++++++||++|++|.|||.||++||||||.++ .+++++||.+|++.+++|+||.
T Consensus 1031 TvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~ 1110 (1228)
T KOG0055|consen 1031 TVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFIS 1110 (1228)
T ss_pred HHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHh
Confidence 999999999999999999999999999999999999999999999999999999987 4589999999999999999999
Q ss_pred hhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh
Q 000432 1383 AKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID 1462 (1513)
Q Consensus 1383 ~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~ 1462 (1513)
+||+||||.|||+|.+||||||||||||||++||||||+|||||||||.++|+.+|++|++...+||+|+|||||+||++
T Consensus 1111 sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn 1190 (1228)
T KOG0055|consen 1111 SLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN 1190 (1228)
T ss_pred cCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEeCCEEeEecChhHHHhcCChHHHHHHHHHh
Q 000432 1463 SDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYS 1499 (1513)
Q Consensus 1463 ~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~~~~~ 1499 (1513)
||.|.|+++|+|+|.|||++|+++ +|.|++|++.+.
T Consensus 1191 aD~I~Vi~~G~VvE~GtH~~L~~~-~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1191 ADVIAVLKNGKVVEQGTHDELLAK-RGIYFRLVQLQS 1226 (1228)
T ss_pred CCEEEEEECCEEEecccHHHHHhC-CCchHHHhhhcc
Confidence 999999999999999999999995 899999998653
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-144 Score=1467.17 Aligned_cols=1180 Identities=17% Similarity=0.199 Sum_probs=867.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 309 FFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRLR 388 (1513)
Q Consensus 309 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir 388 (1513)
.+.+++.++++.++.++..++..+.|++++.++|.+.... . . ..+++.++++.++..++...+.+...+++.++.
T Consensus 55 ~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~--~-~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 129 (1466)
T PTZ00265 55 PASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE--N-V--NDIIFSLVLIGIFQFILSFISSFCMDVVTTKIL 129 (1466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--h-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777888888899999999999999999999764221 1 1 112223333444455555566667778999999
Q ss_pred HHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000432 389 AALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFY-SNYMFMLPVQISLAIYILR-TNLGLGSLAALAATL 466 (1513)
Q Consensus 389 ~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~l~~L~-~~lg~~~l~~l~~~~ 466 (1513)
..++..+|+|.++++..++++.++|++.+.++.|++.+.+.+.. +..+...++.++.++++++ ..+.++ ++.+++++
T Consensus 130 ~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~La-lv~l~~~p 208 (1466)
T PTZ00265 130 KTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLT-LCITCVFP 208 (1466)
T ss_pred HHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHH
Confidence 99999999999999999999999999999999999999987643 3344444444444443332 222232 33334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 467 TVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFW 546 (1513)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~~~~~~ 546 (1513)
+++.+...+.++.++..++..+..++..+.+.|.++||++||.|+.|+.+.+++++..+...+...+.....++...+..
T Consensus 209 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~ 288 (1466)
T PTZ00265 209 LIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMIN 288 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566777777788888888889999999999999999999999999999886655444444444333333222211
Q ss_pred --HHHHHHHHHHHHHHHHhcc--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 000432 547 --GSPTFISVVTFGACMLLGI--------QLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQ 616 (1513)
Q Consensus 547 --~~p~~v~~~~f~~~~~~~~--------~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~ 616 (1513)
.....+.++++|++++..+ .+++|.+++++........++..+...+..++.+++|.+||.++++.++..
T Consensus 289 ~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~ 368 (1466)
T PTZ00265 289 GFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLV 368 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 1223445667888887754 588888887765555545555666667889999999999999999865432
Q ss_pred cccccccCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEEC-C
Q 000432 617 RDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKIS-G 695 (1513)
Q Consensus 617 ~~~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~-g 695 (1513)
++.......+ ....|+++|++|+|+...+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++ |
T Consensus 369 ~~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g 447 (1466)
T PTZ00265 369 ENNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDS 447 (1466)
T ss_pred CCCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCC
Confidence 2111111111 1237999999999985434579999999999999999999999999999999999999999999994 4
Q ss_pred -------------eEEEEcCCCcccCccHHHHHccCCC------------------------------------------
Q 000432 696 -------------TKAYVPQSPWILTGNIRENILFGNQ------------------------------------------ 720 (1513)
Q Consensus 696 -------------~~ayv~Q~~~l~~~ti~eNI~fg~~------------------------------------------ 720 (1513)
.++||+|+|.+|++||+|||.+|..
T Consensus 448 ~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1466)
T PTZ00265 448 HNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSN 527 (1466)
T ss_pred cchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhccc
Confidence 2599999999999999999999742
Q ss_pred ----------------CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEeeCcC
Q 000432 721 ----------------YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPF 784 (1513)
Q Consensus 721 ----------------~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~illLDep~ 784 (1513)
.++++..++++.+++.+.++.+|+|++|.+|++|.+|||||||||+||||++++|+||||||||
T Consensus 528 ~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpT 607 (1466)
T PTZ00265 528 TTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEAT 607 (1466)
T ss_pred ccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 1224556677777888889999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccccCCEEEEEeCC-------------------------------
Q 000432 785 SAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPAADIILVMENG------------------------------- 831 (1513)
Q Consensus 785 salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~~~d~i~vl~~G------------------------------- 831 (1513)
|+||+++++.+. +.+..+. +++|+|+||||++++..||+|++|++|
T Consensus 608 SaLD~~se~~i~-~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1466)
T PTZ00265 608 SSLDNKSEYLVQ-KTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDN 686 (1466)
T ss_pred cccCHHHHHHHH-HHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccccccc
Confidence 999999987775 5676664 489999999999999999999999986
Q ss_pred ----------------eEEEecChHHHHh-cCccHHHHHHhhhhhhhhhc-c-cccCCCCCCCCCCCCccCc--Ccccc-
Q 000432 832 ----------------RIAQAGRFEELLK-QNIGFEVLVGAHSQALESVL-T-VETSSRTSQDPTPESELNS--DSTSN- 889 (1513)
Q Consensus 832 ----------------~i~~~g~~~~l~~-~~~~~~~l~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~--~~~~~- 889 (1513)
+|+|+|+|+||++ .++.|..+++.+........ . .+.....+.+......... +....
T Consensus 687 ~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1466)
T PTZ00265 687 NNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGN 766 (1466)
T ss_pred cccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccccccccccccccccc
Confidence 5999999999998 68999999976532211100 0 0000000000000000000 00000
Q ss_pred --ccccccCCCccchhh-h--hhhhcCCCchhhhHh----hhcccchHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 000432 890 --VKLVHSQHDSEHELS-L--EITEKGGKLVQEEER----EKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVAS 960 (1513)
Q Consensus 890 --~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~e~~----~~g~v~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~ 960 (1513)
............... . ++.....+....+++ ......+..++++++......+ +.+++.++..++....
T Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 844 (1466)
T PTZ00265 767 SKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVT--IIALSILVAGGLYPVF 844 (1466)
T ss_pred ccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 000000000000000 0 000000000000000 0011123334444443332222 1222223333333334
Q ss_pred hhhhcccCCCCCCCC-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccc--cCh
Q 000432 961 NYWMAWASPPTSDGE-PALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDS--TPT 1037 (1513)
Q Consensus 961 ~~~l~~~~~~~~~~~-~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~--~~~ 1037 (1513)
++.++...+...... .......+.+++++++++..++.+++.++..+.+.+...++|.++|+++++.|++|||+ +++
T Consensus 845 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~ 924 (1466)
T PTZ00265 845 ALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAP 924 (1466)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCH
Confidence 444443222110000 01123456677788888889999999999999999999999999999999999999986 899
Q ss_pred hHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH----
Q 000432 1038 GRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIP--TARELARL---- 1111 (1513)
Q Consensus 1038 G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv~ip~~~l~~~~~~~y~~--~~r~l~rl---- 1111 (1513)
|++++|+++|++.+...+...+..++..++.+++.++++++.+|.++++++|++++.........+ ..++.++.
T Consensus 925 G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1466)
T PTZ00265 925 GLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQ 1004 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999999999999999999999999999999999999888776655443322111111 11111111
Q ss_pred ---------HHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1112 ---------AEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFS 1182 (1513)
Q Consensus 1112 ---------~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~ 1182 (1513)
.....+...+.++|++.|++|||+|+.|++|.+++.+..+...+..........++....+++..+..+++
T Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1084 (1466)
T PTZ00265 1005 PGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFA 1084 (1466)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334567889999999999999999999999999988887776665555444444444444444433333
Q ss_pred HHHH-HHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCC-CCCCCCCc
Q 000432 1183 LVVL-VTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRP-PSNWPDVG 1260 (1513)
Q Consensus 1183 ~~~~-~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~~~~~~~-~~~wp~~g 1260 (1513)
.++. ..+..|.++.|.+..++.+.+....++..+...+.+++....+.+|+.++++.+++.+.......+ +...+..|
T Consensus 1085 ~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g 1164 (1466)
T PTZ00265 1085 YWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKG 1164 (1466)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCc
Confidence 3332 335588999998877776655444556677888899999999999999999876543211111111 00123458
Q ss_pred eEEEEEEEEEEcCC-CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC------------------------
Q 000432 1261 TISFHNLQIRYAEH-LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP------------------------ 1315 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~-~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep------------------------ 1315 (1513)
.|+|+||+|+|+++ ..+||+|+||+|+|||+|||||+||||||||+++|+|+|+|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 89999999999743 23699999999999999999999999999999999999999
Q ss_pred ------------------------------CCcEEEEcCeeCCCCChHHhhhceEEEcCCCccccCcHhhccCCC-CCCC
Q 000432 1316 ------------------------------TMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPL-VQYS 1364 (1513)
Q Consensus 1316 ------------------------------~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~-~~~s 1364 (1513)
++|+|+|||+||+++++++||++|+||||||+||+|||||||.++ ++++
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at 1324 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDAT 1324 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCC
Confidence 699999999999999999999999999999999999999999887 4699
Q ss_pred HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHh
Q 000432 1365 DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQE 1444 (1513)
Q Consensus 1365 deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~ 1444 (1513)
||||++|++.++++|||.+||+||||.|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++|++.
T Consensus 1325 ~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~ 1404 (1466)
T PTZ00265 1325 REDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDI 1404 (1466)
T ss_pred HHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c--CCcEEEEeccChhhHhhcCEEEEEeC----CEEe-EecChhHHHhcCChHHHHHHHHH
Q 000432 1445 F--KDRTVVTIAHRIHTVIDSDLVLVLSD----GRIA-EYDSPTKLLEREDSFFSQLIKEY 1498 (1513)
Q Consensus 1445 ~--~~~TvI~IAHRl~ti~~~DrIlVLd~----G~Iv-E~Gtp~eLl~~~~~~f~~l~~~~ 1498 (1513)
. +++|+|+||||++|+++||+|+||++ |+++ |.|+|+||+++++|.|++|++.+
T Consensus 1405 ~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1405 KDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred hccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 4 69999999999999999999999999 9954 99999999985579999999764
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-97 Score=894.51 Aligned_cols=572 Identities=22% Similarity=0.342 Sum_probs=494.6
Q ss_pred chHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCC-CCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 926 GKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSD-GEPALGMNIVLLVYTLLTVGSSLCVLLRAML 1004 (1513)
Q Consensus 926 ~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~ 1004 (1513)
.++..+.|.++..++.... .++.++.....++.|+++.-.+|.... .+..........+..++.++++++.++|.++
T Consensus 134 ~~~rl~~l~~~~~~~l~~a--~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~ 211 (716)
T KOG0058|consen 134 LLKRLLGLLKPEWKWLVAA--FVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGL 211 (716)
T ss_pred HHHHHHHHhchhHHHHHHH--HHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777655443322 223344445566677666533332211 1111223445667778888999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000432 1005 VAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVF 1084 (1513)
Q Consensus 1005 ~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~ 1084 (1513)
+.+.+.++..++|..+|+++++..++|||.+.+|+|+||+++|...+...++..+...+.+.++.++.+++|++.+|.+.
T Consensus 212 ~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Lt 291 (716)
T KOG0058|consen 212 LQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLT 291 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHH
Q 000432 1085 VIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAM 1164 (1513)
Q Consensus 1085 lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~ 1164 (1513)
++.+..+++...+.++|.+..|++.+..+++-+...+...|.+++++|||+|+.|++..+++.+.++.-.+.......+.
T Consensus 292 lv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~ 371 (716)
T KOG0058|consen 292 LVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAY 371 (716)
T ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98888888888888889999999999999999999999999999999999999999888888777777666555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000432 1165 EWLCFRLNLLSNFVFAFSLVV-LVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEA 1243 (1513)
Q Consensus 1165 ~wl~~~l~~~~~~~~~~~~~~-~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~ 1243 (1513)
..+....++..++....++++ ..++..|.+++|.+..++.|...+...+.++...+.++.+...|.+|++||++.+|.-
T Consensus 372 ~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i 451 (716)
T KOG0058|consen 372 GIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRI 451 (716)
T ss_pred hHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCC
Confidence 444444555555544444443 2456789999999999999999999999999999999999999999999999987664
Q ss_pred CCcccCCCCCCCCCCCceEEEEEEEEEEcCCC-CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEE
Q 000432 1244 PLVTEECRPPSNWPDVGTISFHNLQIRYAEHL-PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIII 1322 (1513)
Q Consensus 1244 ~~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~-~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~I 1322 (1513)
+.. +...| . ..+|.|+|+||+|+|+... -+||||+||+|+|||+||+||||||||||++++|.|+|+|++|+|++
T Consensus 452 ~~~--G~~~p-~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Ill 527 (716)
T KOG0058|consen 452 PLT--GTLAP-D-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILL 527 (716)
T ss_pred CCC--Ccccc-c-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 432 11112 2 4689999999999997542 36999999999999999999999999999999999999999999999
Q ss_pred cCeeCCCCChHHhhhceEEEcCCCccccCcHhhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCCh
Q 000432 1323 DNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPL-VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSV 1401 (1513)
Q Consensus 1323 DGvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~-~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSg 1401 (1513)
||+||++++.+.||++||+|.|||+||+|||||||.++ .+.+||||.+|+++|+.||||.++|+||||.|||+|..|||
T Consensus 528 DG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSG 607 (716)
T KOG0058|consen 528 DGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSG 607 (716)
T ss_pred CCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccc
Confidence 99999999999999999999999999999999999875 47999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChh
Q 000432 1402 GQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPT 1481 (1513)
Q Consensus 1402 GQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~ 1481 (1513)
||||||||||||+|||+||||||||||||.++|..+|++|.+..+++|||+|||||+||+.||+|+|+|+|+|+|.|+|+
T Consensus 608 GQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~ 687 (716)
T KOG0058|consen 608 GQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHD 687 (716)
T ss_pred hHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHhhccc
Q 000432 1482 KLLEREDSFFSQLIKEYSMRSQ 1503 (1513)
Q Consensus 1482 eLl~~~~~~f~~l~~~~~~~~~ 1503 (1513)
||+++++|.|++|++++.....
T Consensus 688 eLl~~~~gly~~Lv~~q~~~~~ 709 (716)
T KOG0058|consen 688 ELLSKPNGLYAKLVQRQLDSGE 709 (716)
T ss_pred HHhhCcccHHHHHHHHhcccCC
Confidence 9999988999999998765443
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-89 Score=859.30 Aligned_cols=566 Identities=25% Similarity=0.353 Sum_probs=508.1
Q ss_pred chHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 926 GKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLV 1005 (1513)
Q Consensus 926 ~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~ 1005 (1513)
++..++.++...+. .+.-+++..++.+++.+++|++.++..|.................++++++...++.++|.++.
T Consensus 141 ~~~~f~~~~~~~~~--~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~ 218 (709)
T COG2274 141 GLSWFIPLLFKYRR--LLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLI 218 (709)
T ss_pred chHhHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555553332 2334556677888999999999998888754322222334555666777888899999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000432 1006 AITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFV 1085 (1513)
Q Consensus 1006 ~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~l 1085 (1513)
.+.+.+....+-.++++|++++|++||+++++|++++|+. |++.|..++...+...+..++.++..+++|++++|++++
T Consensus 219 ~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~l 297 (709)
T COG2274 219 AHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTL 297 (709)
T ss_pred HHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999995 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 000432 1086 IFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAME 1165 (1513)
Q Consensus 1086 v~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1165 (1513)
+.+..++++..+.-...+..|+..+...+..+...+++.|++.|++|||+.+.|++|..++++..+++.+..+.......
T Consensus 298 i~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~ 377 (709)
T COG2274 298 IVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLAL 377 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 88777777766666666777777777777788889999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000432 1166 WLCFRLNLLSNFVFAFSLVVLV-TLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAP 1244 (1513)
Q Consensus 1166 wl~~~l~~~~~~~~~~~~~~~~-~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~ 1244 (1513)
|......++..+....++++.+ .+..|.++.|.+.++.+....++.++..++..+.+++....+.||+.++++.|+|.+
T Consensus 378 ~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~ 457 (709)
T COG2274 378 ILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQE 457 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 9888888888877766666653 466889999999999999999999999999999999999999999999999998864
Q ss_pred CcccCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcC
Q 000432 1245 LVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN 1324 (1513)
Q Consensus 1245 ~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDG 1324 (1513)
.. ..+...|+..|+|+|+||+|+|+++.|++|+|+|++|+|||+|||||+||||||||+++|.|+|+|++|+|++||
T Consensus 458 ~~---~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg 534 (709)
T COG2274 458 GD---KTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDG 534 (709)
T ss_pred cc---cccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 32 223455677899999999999999988999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCChHHhhhceEEEcCCCccccCcHhhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhH
Q 000432 1325 VDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLV-QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQ 1403 (1513)
Q Consensus 1325 vdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~~-~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQ 1403 (1513)
+|++++++++||++|++||||++||+|||||||+..+ +.+|||+++|++.++++|||.++|+||||+|||+|.||||||
T Consensus 535 ~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQ 614 (709)
T COG2274 535 VDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQ 614 (709)
T ss_pred EeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHH
Confidence 9999999999999999999999999999999998764 688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHH
Q 000432 1404 RQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKL 1483 (1513)
Q Consensus 1404 RQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eL 1483 (1513)
||||+|||||++||+||||||||||||++||+.|++.|.+...+||+|+||||++|+++||||+|||+|+|+|.|||+||
T Consensus 615 rQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~el 694 (709)
T COG2274 615 RQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEEL 694 (709)
T ss_pred HHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHH
Q 000432 1484 LEREDSFFSQLIKEY 1498 (1513)
Q Consensus 1484 l~~~~~~f~~l~~~~ 1498 (1513)
++. +|.|+++++.+
T Consensus 695 l~~-~g~y~~l~~~q 708 (709)
T COG2274 695 LAQ-GGLYARLYQQQ 708 (709)
T ss_pred HHh-cChHHHHHhcc
Confidence 998 89999998764
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-84 Score=825.34 Aligned_cols=545 Identities=26% Similarity=0.394 Sum_probs=462.8
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000432 946 ILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVH 1025 (1513)
Q Consensus 946 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll 1025 (1513)
.+++.++...+.+..++++.+..+... ........+...++++.++..++.++..++..+.+.+...++|.+++++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~ 96 (567)
T COG1132 19 AILLLLLSALLSLLLPLLIGRIIDALL--ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLL 96 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556777777777776655432 011222344455556666777888888888888889999999999999999
Q ss_pred cCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1026 RAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTA 1105 (1513)
Q Consensus 1026 ~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv~ip~~~l~~~~~~~y~~~~ 1105 (1513)
++|+++|+++++|++++|+++|++.++..+......+...++.+++.+++++..+|.++++++...+++.+....+.+..
T Consensus 97 ~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 176 (567)
T COG1132 97 RLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKS 176 (567)
T ss_pred hCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988866666678889999999999999998877766666666666666666
Q ss_pred HHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1106 RELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVV 1185 (1513)
Q Consensus 1106 r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~ 1185 (1513)
++..+......+.+.+.+.|+++|+++||+|+.++...+++.+..+...+...........+.....++..+......++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (567)
T COG1132 177 RKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLAL 256 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888999999999999999999999999776666666655555444434444444444444444433333333
Q ss_pred H-HHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCceEEE
Q 000432 1186 L-VTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISF 1264 (1513)
Q Consensus 1186 ~-~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~~~~~~~~~~wp~~g~I~f 1264 (1513)
. ..+..+.++.|.+..++.|...+..++..+...+..++....|.||+.++++.+++... ...+ .++..|.|+|
T Consensus 257 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~I~f 331 (567)
T COG1132 257 GGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPDP--LKDTIGSIEF 331 (567)
T ss_pred HHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCCC--CCCCCCeEEE
Confidence 2 23456779999999999999999999999999999999999999999999987654221 1111 3345688999
Q ss_pred EEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEcC
Q 000432 1265 HNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQ 1344 (1513)
Q Consensus 1265 ~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQ 1344 (1513)
+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+|||+||+++++.+||++|++|||
T Consensus 332 ~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Q 410 (567)
T COG1132 332 ENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQ 410 (567)
T ss_pred EEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcc
Confidence 9999999864 469999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCcHhhccCCCCC-CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000432 1345 DPTLFDGTVRGNLDPLVQ-YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLD 1423 (1513)
Q Consensus 1345 dp~LF~gTIR~NLdp~~~-~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLD 1423 (1513)
||+||+||||+||+++.+ +||||+++|++.++++|+|+++|+||||.|||+|.+||||||||+|||||++|+|+|||||
T Consensus 411 d~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILD 490 (567)
T COG1132 411 DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILD 490 (567)
T ss_pred cceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999998864 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhcCChHHHHHHHHHh
Q 000432 1424 EATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYS 1499 (1513)
Q Consensus 1424 EaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~~~~~ 1499 (1513)
||||++|++||+.||+++++..+++|+|+||||++|+++||+|+|||+|+|+|+|+|+||+++ +|.|++|++++.
T Consensus 491 EaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~~~~~ 565 (567)
T COG1132 491 EATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQG 565 (567)
T ss_pred ccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHHHhh
Confidence 999999999999999999988899999999999999999999999999999999999999998 899999998765
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-82 Score=814.62 Aligned_cols=565 Identities=18% Similarity=0.236 Sum_probs=460.9
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 927 KEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPAL-GMNIVLLVYTLLTVGSSLCVLLRAMLV 1005 (1513)
Q Consensus 927 ~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~vy~~l~~~~~~~~~~~~~~~ 1005 (1513)
++.+++|+++.++... +.+++.++..++.+..++.+++..|.......+. ....++.+++++.++..++.+++.++.
T Consensus 10 ~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
T PRK11174 10 TRWLKQQSKPAKRWLN--LSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVG 87 (588)
T ss_pred hHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777776554433 3344555666677777777776655321001111 123344455566667788888999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000432 1006 AITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFV 1085 (1513)
Q Consensus 1006 ~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~l 1085 (1513)
...+.+...+++.+++++++++|++||++.++|++++|+++|++.++..+...+..++..++.+++.++++++++|++++
T Consensus 88 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 167 (588)
T PRK11174 88 FKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGL 167 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 000432 1086 IFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAME 1165 (1513)
Q Consensus 1086 v~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1165 (1513)
+++..+++..++...+.+..++..+......+.+.+++.|+++|+++||+|++|+++.+++.+..+...+..........
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (588)
T PRK11174 168 ILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAF 247 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76665555555556666666777777777788899999999999999999999999999888887777666555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000432 1166 WLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSI---------AGLAVTYGINLNVLQASIIWNICNAENKMISVERILQY 1236 (1513)
Q Consensus 1166 wl~~~l~~~~~~~~~~~~~~~~~~~~g~i~~g~---------~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~ 1236 (1513)
+......++..+...+..++......|.++.|. +.+++.+...+..++..+...+..+.....+.+|+.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 327 (588)
T PRK11174 248 LSSAVLEFFASISIALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTF 327 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433222221221111125555443 22333556677788888989999999999999999999
Q ss_pred cCCCCCCCCcccCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Q 000432 1237 SNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPT 1316 (1513)
Q Consensus 1237 ~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~ 1316 (1513)
++.|++.+.. +..+ ...+..+.|+|+||+|.|.++ ++||+|+||+|+|||++||||+||||||||+++|+|+| |+
T Consensus 328 l~~~~~~~~~--~~~~-~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~ 402 (588)
T PRK11174 328 LETPLAHPQQ--GEKE-LASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY 402 (588)
T ss_pred HcCCCcccCC--Cccc-cCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC
Confidence 9877653211 1111 111234679999999988655 46999999999999999999999999999999999999 99
Q ss_pred CcEEEEcCeeCCCCChHHhhhceEEEcCCCccccCcHhhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccC
Q 000432 1317 MGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPL-VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAEN 1395 (1513)
Q Consensus 1317 ~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~-~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~ 1395 (1513)
+|+|.+||+|+++++.+++|++|+||||||+||+|||||||..+ ++++|||+++|++.|+++++|+++|+||||.|||+
T Consensus 403 ~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 403 QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred CcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 99999999999999999999999999999999999999999987 46999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEe
Q 000432 1396 GENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIA 1475 (1513)
Q Consensus 1396 G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~Iv 1475 (1513)
|.||||||||||+||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++.+||+|+||++|+|+
T Consensus 483 G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~ 562 (588)
T PRK11174 483 AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIV 562 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEe
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred EecChhHHHhcCChHHHHHHHHHh
Q 000432 1476 EYDSPTKLLEREDSFFSQLIKEYS 1499 (1513)
Q Consensus 1476 E~Gtp~eLl~~~~~~f~~l~~~~~ 1499 (1513)
|.|+|+||+++ ++.|++|++.+.
T Consensus 563 e~G~~~eL~~~-~~~y~~l~~~q~ 585 (588)
T PRK11174 563 QQGDYAELSQA-GGLFATLLAHRQ 585 (588)
T ss_pred ecCCHHHHHhc-chHHHHHHHHhh
Confidence 99999999987 789999998654
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-81 Score=814.88 Aligned_cols=561 Identities=20% Similarity=0.230 Sum_probs=474.6
Q ss_pred hHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 927 KEVYWSY-LTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLV 1005 (1513)
Q Consensus 927 ~~~~~~y-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~ 1005 (1513)
++.+.++ ++..++. +..++++.++..++.++.|+.++...|.............++++++++.++..++.+++.++.
T Consensus 123 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (686)
T TIGR03797 123 LRDLLRFALRGARRD--LLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAV 200 (686)
T ss_pred HHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 4433332 234455666777788888888876666432111111223345556666777888999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000432 1006 AITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFV 1085 (1513)
Q Consensus 1006 ~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~l 1085 (1513)
...+.+...+++.+++++++++|++||++.++|++++|++ |++.++..+...+...+..++.+++.++++++++|++++
T Consensus 201 ~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 279 (686)
T TIGR03797 201 LRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLAL 279 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997 799999988888888888888888888999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 000432 1086 IFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAME 1165 (1513)
Q Consensus 1086 v~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1165 (1513)
+++.++++++.+...+.+..+...+......+...+++.|+++|+.+||+|+.|+++.+++.+..+...+..+.......
T Consensus 280 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (686)
T TIGR03797 280 VAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIEN 359 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666555555555555555555555566677889999999999999999999999999999988888888777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000432 1166 WLCFRLNLLSNFVFAFSLVVL-VTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAP 1244 (1513)
Q Consensus 1166 wl~~~l~~~~~~~~~~~~~~~-~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~ 1244 (1513)
|......++..+...+..++. ..+..|.++.|.+..+.++...+..++..+...+.+++....+.+|+.++++.|+|.+
T Consensus 360 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 439 (686)
T TIGR03797 360 LLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVD 439 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 776666665554443333333 3345889999999999999999999999999999999999999999999998776643
Q ss_pred CcccCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcC
Q 000432 1245 LVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN 1324 (1513)
Q Consensus 1245 ~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDG 1324 (1513)
.. ..+ ..+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 440 ~~---~~~--~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg 514 (686)
T TIGR03797 440 EA---KTD--PGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDG 514 (686)
T ss_pred cC---cCC--CCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECC
Confidence 11 111 1134578999999999986667899999999999999999999999999999999999999999999999
Q ss_pred eeCCCCChHHhhhceEEEcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHH
Q 000432 1325 VDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQR 1404 (1513)
Q Consensus 1325 vdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQR 1404 (1513)
+|+++++.+++|++|++|||||++|+|||||||.++++++|+|+++|++.++++++++++|+||||.+||+|.|||||||
T Consensus 515 ~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQr 594 (686)
T TIGR03797 515 QDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQR 594 (686)
T ss_pred EEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 99999999999999999999999999999999998766999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHH
Q 000432 1405 QLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1405 Qrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
|||+||||++++|+|||||||||+||++||+.|++.|++. ++|+|+||||++++.+||+|+|||+|+|+|.|+|+||+
T Consensus 595 QRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll 672 (686)
T TIGR03797 595 QRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELM 672 (686)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999886 68999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHH
Q 000432 1485 EREDSFFSQLIKEY 1498 (1513)
Q Consensus 1485 ~~~~~~f~~l~~~~ 1498 (1513)
++ +|.|++|++++
T Consensus 673 ~~-~~~y~~l~~~q 685 (686)
T TIGR03797 673 AR-EGLFAQLARRQ 685 (686)
T ss_pred hC-CcHHHHHHHhc
Confidence 87 79999998753
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-81 Score=818.12 Aligned_cols=560 Identities=20% Similarity=0.289 Sum_probs=466.5
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 927 KEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVA 1006 (1513)
Q Consensus 927 ~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~ 1006 (1513)
+..+++|+++.+.. +...+++.++..++.+..|++++...|..............+.+++++.++..++.+++.++..
T Consensus 149 ~~~l~~~~~~~~~~--l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (711)
T TIGR00958 149 LFRLLGLSGRDWPW--LISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFN 226 (711)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666644332 2334455566777788888888766554321111111223445566666778888889999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000432 1007 ITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVI 1086 (1513)
Q Consensus 1007 ~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv 1086 (1513)
+.+.+...++|.++++++++.|++||+++++|+++||+++|++.++..+...+..++.+++.+++.+++++..+|+++++
T Consensus 227 ~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~ 306 (711)
T TIGR00958 227 YTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMV 306 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 000432 1087 FIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEW 1166 (1513)
Q Consensus 1087 ~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1166 (1513)
++..+++..++...+.+..++..+...+..+...+++.|+++|+++||+|+.|+++.+++.+..++..+...........
T Consensus 307 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (711)
T TIGR00958 307 TLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAG 386 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666666777777777777777778888899999999999999999999998888888887766655444333222
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 000432 1167 LCFRLNLLSNFVFAFSLVV-LVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPL 1245 (1513)
Q Consensus 1167 l~~~l~~~~~~~~~~~~~~-~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~ 1245 (1513)
......++..+...+...+ ...+..|.+++|.+..++.|...+..++..+...+.++++...+.+|+.++++.+++.+.
T Consensus 387 ~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 466 (711)
T TIGR00958 387 YLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPL 466 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 2222222222222222222 223458899999999999999999999999999999999999999999999987665432
Q ss_pred cccCCCCCCCCCCCceEEEEEEEEEEcCC-CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcC
Q 000432 1246 VTEECRPPSNWPDVGTISFHNLQIRYAEH-LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN 1324 (1513)
Q Consensus 1246 ~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~-~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDG 1324 (1513)
. . ....++..|.|+|+||+|+|+++ .+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||
T Consensus 467 ~--~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg 542 (711)
T TIGR00958 467 T--G--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDG 542 (711)
T ss_pred C--C--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 1 1 11123456889999999999753 35799999999999999999999999999999999999999999999999
Q ss_pred eeCCCCChHHhhhceEEEcCCCccccCcHhhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhH
Q 000432 1325 VDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPL-VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQ 1403 (1513)
Q Consensus 1325 vdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~-~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQ 1403 (1513)
+|+++++.+++|++|++|||||++|+|||||||... ++++||++++|++.++++++++++|+||||.+||+|.+|||||
T Consensus 543 ~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ 622 (711)
T TIGR00958 543 VPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQ 622 (711)
T ss_pred EEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHH
Confidence 999999999999999999999999999999999865 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHH
Q 000432 1404 RQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKL 1483 (1513)
Q Consensus 1404 RQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eL 1483 (1513)
|||||||||++++|+|||||||||+||++||+.|++ ....+++|+|+||||++++..||+|+|||+|+|+|.|+|+||
T Consensus 623 kQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL 700 (711)
T TIGR00958 623 KQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQL 700 (711)
T ss_pred HHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHH
Confidence 999999999999999999999999999999999999 344589999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHH
Q 000432 1484 LEREDSFFSQLI 1495 (1513)
Q Consensus 1484 l~~~~~~f~~l~ 1495 (1513)
+++ ++.|++|+
T Consensus 701 ~~~-~~~y~~lv 711 (711)
T TIGR00958 701 MED-QGCYKHLV 711 (711)
T ss_pred HhC-CCchHhcC
Confidence 987 68998874
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-81 Score=816.18 Aligned_cols=564 Identities=21% Similarity=0.247 Sum_probs=478.7
Q ss_pred chHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 926 GKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLV 1005 (1513)
Q Consensus 926 ~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~ 1005 (1513)
.++.++.+++..++.. ...+++.++..++.++.|++++...|.............++..++++.++..++.+++.++.
T Consensus 141 ~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (710)
T TIGR03796 141 LLRALWRRLRGSRGAL--LYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYL 218 (710)
T ss_pred cHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777776544332 23445556677777888888887666432111111123344555666677888999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000432 1006 AITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFV 1085 (1513)
Q Consensus 1006 ~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~l 1085 (1513)
...+.+...+++.+++++++++|++||++.++|++++|+++| +.+...+...+..++..++.+++.++++++++|++++
T Consensus 219 ~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 297 (710)
T TIGR03796 219 RRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTL 297 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 6788888888888899999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 000432 1086 IFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAME 1165 (1513)
Q Consensus 1086 v~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1165 (1513)
+++..++++.++..++.+..++..+......+...+++.|+++|+.+||+++.|+.+.+++.+..++..+..........
T Consensus 298 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (710)
T TIGR03796 298 IGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQ 377 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777666666666666666777666777788899999999999999999999999999988888877777666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000432 1166 WLCFRLNLLSNFVFAFSLVVL-VTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAP 1244 (1513)
Q Consensus 1166 wl~~~l~~~~~~~~~~~~~~~-~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~ 1244 (1513)
+......++..+...+..++. ..+..|.++.|.+..++++...+..++..+...+.+++....+++|+.++++.|+|.+
T Consensus 378 ~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~ 457 (710)
T TIGR03796 378 ILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPL 457 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 666655555554433333332 3345889999999999999999999999999999999999999999999998877653
Q ss_pred CcccC--C-CCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEE
Q 000432 1245 LVTEE--C-RPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321 (1513)
Q Consensus 1245 ~~~~~--~-~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~ 1321 (1513)
..... . ...+.++..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|.
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 537 (710)
T TIGR03796 458 LEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537 (710)
T ss_pred cccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 21100 0 01111344689999999999987667799999999999999999999999999999999999999999999
Q ss_pred EcCeeCCCCChHHhhhceEEEcCCCccccCcHhhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCC
Q 000432 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLV-QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWS 1400 (1513)
Q Consensus 1322 IDGvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~~-~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLS 1400 (1513)
+||+|+++++.+++|++|+||||||++|+|||||||..++ +++|+++++|++.++++++++++|+||||.++|+|.|||
T Consensus 538 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LS 617 (710)
T TIGR03796 538 FDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLS 617 (710)
T ss_pred ECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCC
Confidence 9999999999999999999999999999999999998764 689999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecCh
Q 000432 1401 VGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSP 1480 (1513)
Q Consensus 1401 gGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp 1480 (1513)
|||||||+||||++++|+||+||||||+||++||+.|.+.|++ .++|+|+||||++++.+||||+|||+|+|+|.|+|
T Consensus 618 GGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~ 695 (710)
T TIGR03796 618 GGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTH 695 (710)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999999987 58999999999999999999999999999999999
Q ss_pred hHHHhcCChHHHHHH
Q 000432 1481 TKLLEREDSFFSQLI 1495 (1513)
Q Consensus 1481 ~eLl~~~~~~f~~l~ 1495 (1513)
+||+++ ++.|++|+
T Consensus 696 ~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 696 EELWAV-GGAYARLI 709 (710)
T ss_pred HHHHHc-CCcHHHHh
Confidence 999987 78999987
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-81 Score=813.31 Aligned_cols=562 Identities=20% Similarity=0.250 Sum_probs=470.6
Q ss_pred chHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 926 GKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLV 1005 (1513)
Q Consensus 926 ~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~ 1005 (1513)
+++.++.|++..++.. ..++++.++..++.++.|++++...|.............+...++++.++..++.+++.++.
T Consensus 143 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (708)
T TIGR01193 143 SLLKFIPLITRQKKLI--VNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLL 220 (708)
T ss_pred hHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677776544432 23445566677778888888887666432111111222334445556667788889999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000432 1006 AITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFV 1085 (1513)
Q Consensus 1006 ~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~l 1085 (1513)
...+.+...+++.+++++++++|++||+++++|++++|++ |.+.+...+...+...+..++.+++.++++++++|++++
T Consensus 221 ~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 299 (708)
T TIGR01193 221 NVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFL 299 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999998 888888888877777777888888888889999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 000432 1086 IFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAME 1165 (1513)
Q Consensus 1086 v~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1165 (1513)
+++..++++..+...+.+..++..+......+...+++.|+++|+.+||+|+.|+++.+++.+..+...+..+.......
T Consensus 300 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (708)
T TIGR01193 300 LSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQ 379 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666666666777777777777888999999999999999999999999988888887776666555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000432 1166 WLCFRLNLLSNFVFAFSLVV-LVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAP 1244 (1513)
Q Consensus 1166 wl~~~l~~~~~~~~~~~~~~-~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~ 1244 (1513)
+......++..+...+++++ ...+..|.+++|.+.++.++...+..++..+...+.+++....+++|+.++++.|+|.+
T Consensus 380 ~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 459 (708)
T TIGR01193 380 GQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFI 459 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 44333333333222222222 23345899999999999999999999999999999999999999999999998877653
Q ss_pred CcccCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcC
Q 000432 1245 LVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN 1324 (1513)
Q Consensus 1245 ~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDG 1324 (1513)
... .....++..|.|+|+||+|+|+++ +++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|++||
T Consensus 460 ~~~---~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg 535 (708)
T TIGR01193 460 NKK---KRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNG 535 (708)
T ss_pred ccc---cccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECC
Confidence 211 111234456899999999999754 5699999999999999999999999999999999999999999999999
Q ss_pred eeCCCCChHHhhhceEEEcCCCccccCcHhhccCCC--CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChh
Q 000432 1325 VDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPL--VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVG 1402 (1513)
Q Consensus 1325 vdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~--~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgG 1402 (1513)
+|+++++.+++|++|+||||||+||+|||||||..+ .+++|+++++|++.++++++++++|+||||.|+|+|.+||||
T Consensus 536 ~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgG 615 (708)
T TIGR01193 536 FSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGG 615 (708)
T ss_pred EEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHH
Confidence 999999999999999999999999999999999876 468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhH
Q 000432 1403 QRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTK 1482 (1513)
Q Consensus 1403 QRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~e 1482 (1513)
|||||+||||++++|+|||||||||+||++||+.|++.|++. +++|+|+||||++++..||+|+||++|+++|.|+|+|
T Consensus 616 QrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~ 694 (708)
T TIGR01193 616 QKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDE 694 (708)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999999874 7899999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHH
Q 000432 1483 LLEREDSFFSQLIK 1496 (1513)
Q Consensus 1483 Ll~~~~~~f~~l~~ 1496 (1513)
|+++ +|.|++|++
T Consensus 695 L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 695 LLDR-NGFYASLIH 707 (708)
T ss_pred HHhc-CCcHHHHhh
Confidence 9987 789999975
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-79 Score=787.34 Aligned_cols=548 Identities=24% Similarity=0.325 Sum_probs=454.8
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000432 946 ILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGM--NIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHS 1023 (1513)
Q Consensus 946 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ 1023 (1513)
.+++.++..++.+..|+++.+..|........... ..++++++++.++..++.+++.++....+.+...+++.+++++
T Consensus 28 ~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 107 (592)
T PRK10790 28 AVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDA 107 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777888887666543211111011 1123334555556777888889999999999999999999999
Q ss_pred hhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1024 VHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIP 1103 (1513)
Q Consensus 1024 ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv~ip~~~l~~~~~~~y~~ 1103 (1513)
++++|+++|++.++|++++|+++|++.++..+...+..++..++.+++.++++++.+|+++++++..+++...+...+.+
T Consensus 108 l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~ 187 (592)
T PRK10790 108 ALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQR 187 (592)
T ss_pred HHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999877654433333333344444
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000432 1104 TARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWL-CFRLNLLSNFVFAFS 1182 (1513)
Q Consensus 1104 ~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl-~~~l~~~~~~~~~~~ 1182 (1513)
..+...+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..........+. .....++..+...+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (592)
T PRK10790 188 YSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGL 267 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555667788999999999999999999999999888887776665544443333322 222333332222221
Q ss_pred HHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCceE
Q 000432 1183 LVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTI 1262 (1513)
Q Consensus 1183 ~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~~~~~~~~~~wp~~g~I 1262 (1513)
.+.......|.++.|.+.+++.|...+..++..+...+.++++...+.+|+.++++.+++++. .. ..++..+.|
T Consensus 268 ~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~---~~~~~~~~i 341 (592)
T PRK10790 268 LMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---ND---DRPLQSGRI 341 (592)
T ss_pred HHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CC---ccCCCCCeE
Confidence 111112357889999999999999999999999999999999999999999999987654221 11 112345789
Q ss_pred EEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEE
Q 000432 1263 SFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGII 1342 (1513)
Q Consensus 1263 ~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiV 1342 (1513)
+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||
T Consensus 342 ~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v 420 (592)
T PRK10790 342 DIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420 (592)
T ss_pred EEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEE
Confidence 999999999754 4699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000432 1343 PQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVL 1422 (1513)
Q Consensus 1343 pQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiL 1422 (1513)
||||+||+||||+||.++++++|+++++|++++|++++++++|+||||.++|+|.|||||||||||||||++++|+||+|
T Consensus 421 ~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illl 500 (592)
T PRK10790 421 QQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILIL 500 (592)
T ss_pred ccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhcCChHHHHHHHHHhhc
Q 000432 1423 DEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMR 1501 (1513)
Q Consensus 1423 DEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~~~~~~~ 1501 (1513)
|||||+||++|++.|++.|++..++||+|+||||++++..||+|++||+|+++|.|+|+||+++ ++.|++|++.+...
T Consensus 501 DEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~-~~~y~~l~~~~~~~ 578 (592)
T PRK10790 501 DEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA-QGRYWQMYQLQLAG 578 (592)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC-CCHHHHHHHHHhhh
Confidence 9999999999999999999998889999999999999999999999999999999999999998 69999999876543
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-79 Score=777.78 Aligned_cols=561 Identities=19% Similarity=0.214 Sum_probs=460.6
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCC----chhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 929 VYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPA----LGMNIVLLVYTLLTVGSSLCVLLRAML 1004 (1513)
Q Consensus 929 ~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~vy~~l~~~~~~~~~~~~~~ 1004 (1513)
.+++|+++..+... +.+++.++..++.++.++.++|.+|........ ......+..+.++.++..++.++..++
T Consensus 6 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (574)
T PRK11160 6 PFLKLYKRHWFMLS--LGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLV 83 (574)
T ss_pred HHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665443322 334455566667777777777776632100010 011112233445566777888888899
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000432 1005 VAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVF 1084 (1513)
Q Consensus 1005 ~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~ 1084 (1513)
....+.+...++|.+++++++++|+++|++.++|++++|+++|++.++..+...+..++..++.+++.++++++++|.++
T Consensus 84 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 84 SHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHH
Q 000432 1085 VIFIPVTGIC-IWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSA 1163 (1513)
Q Consensus 1085 lv~ip~~~l~-~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~ 1163 (1513)
++++..+++. ..+..++.+..++..+......+.+.+.+.|+++|+++||+|+.|+++.+++.+..++..+........
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8654433332 233345555556666666777888999999999999999999999999999888888877776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000432 1164 MEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGIN-LNVLQASIIWNICNAENKMISVERILQYSNLPSE 1242 (1513)
Q Consensus 1164 ~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~-l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e 1242 (1513)
..+.....+++..+...++.++......|.+++|.+..++.|... ...++..+...+.+++....|.+|+.++++.|+|
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~ 323 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPE 323 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 666555555555544433333332223677888887777766533 3456677777888889999999999999987765
Q ss_pred CCCcccCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEE
Q 000432 1243 APLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIII 1322 (1513)
Q Consensus 1243 ~~~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~I 1322 (1513)
.+.. ...+ ..+..+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|.+
T Consensus 324 ~~~~--~~~~--~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i 399 (574)
T PRK11160 324 VTFP--TTST--AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILL 399 (574)
T ss_pred CCCC--cccC--CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 3211 1111 11345789999999999765456999999999999999999999999999999999999999999999
Q ss_pred cCeeCCCCChHHhhhceEEEcCCCccccCcHhhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCCh
Q 000432 1323 DNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPL-VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSV 1401 (1513)
Q Consensus 1323 DGvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~-~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSg 1401 (1513)
||+|+++++.+++|++|++|||||+||+|||||||... .+.+|+++++|++++++++++++ |+||||.|||+|.+|||
T Consensus 400 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSg 478 (574)
T PRK11160 400 NGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSG 478 (574)
T ss_pred CCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCH
Confidence 99999999999999999999999999999999999865 36899999999999999999999 99999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChh
Q 000432 1402 GQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPT 1481 (1513)
Q Consensus 1402 GQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~ 1481 (1513)
|||||+|||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||+|++|++|+++|.|+|+
T Consensus 479 GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~ 558 (574)
T PRK11160 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQ 558 (574)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHH
Q 000432 1482 KLLEREDSFFSQLIKE 1497 (1513)
Q Consensus 1482 eLl~~~~~~f~~l~~~ 1497 (1513)
||+++ +|.|++|++.
T Consensus 559 ~l~~~-~g~y~~l~~~ 573 (574)
T PRK11160 559 ELLAQ-QGRYYQLKQR 573 (574)
T ss_pred HHHhc-CcHHHHHHhh
Confidence 99987 7999999863
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-79 Score=796.49 Aligned_cols=554 Identities=22% Similarity=0.278 Sum_probs=466.1
Q ss_pred chHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 926 GKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLV 1005 (1513)
Q Consensus 926 ~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~ 1005 (1513)
.++.++.+++..++.. ..++++.++..++.++.|+.++...|.............+...++++.++..++.+++.++.
T Consensus 134 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (694)
T TIGR03375 134 PKHWFWSTLKESWPLY--RDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFL 211 (694)
T ss_pred cchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666776544332 23445556667778888888877666432111111122333445555666788899999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000432 1006 AITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFV 1085 (1513)
Q Consensus 1006 ~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~l 1085 (1513)
...+.+...+++.++++|++++|++| ++.++|++++|+ +|++.+...+...+...+..++.+++.++++++++|++++
T Consensus 212 ~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 289 (694)
T TIGR03375 212 DVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVW 289 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999998 789999999999 7999999999988888888888888888899999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 000432 1086 IFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAME 1165 (1513)
Q Consensus 1086 v~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1165 (1513)
+.+..+++++.+..++.+..++..+......+...+++.|+++|+++||+|+.|+.+.+++.+..++..+..........
T Consensus 290 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (694)
T TIGR03375 290 VPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSN 369 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666665666666666677777777888999999999999999999999999999988888887776666655555
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000432 1166 WLCFRLNLLSNFVFAFSLVV-LVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAP 1244 (1513)
Q Consensus 1166 wl~~~l~~~~~~~~~~~~~~-~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~ 1244 (1513)
+.....+++..+...+..++ +..+..|.+++|.+..+++|...+..++..+...+.+++....+++|+.++++.|+|.+
T Consensus 370 ~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~ 449 (694)
T TIGR03375 370 LATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERP 449 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 55544554444333322222 23345789999999999999999999999999999999999999999999999877643
Q ss_pred CcccCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcC
Q 000432 1245 LVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN 1324 (1513)
Q Consensus 1245 ~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDG 1324 (1513)
.. .......+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||
T Consensus 450 ~~---~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg 526 (694)
T TIGR03375 450 EG---TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDG 526 (694)
T ss_pred CC---CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 21 111111234578999999999986666799999999999999999999999999999999999999999999999
Q ss_pred eeCCCCChHHhhhceEEEcCCCccccCcHhhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhH
Q 000432 1325 VDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLV-QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQ 1403 (1513)
Q Consensus 1325 vdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~~-~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQ 1403 (1513)
+|+++++++++|+++++|||||++|+|||||||.+.+ +++|+|+++|++.++++++++++|+||||.+||+|.||||||
T Consensus 527 ~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQ 606 (694)
T TIGR03375 527 VDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQ 606 (694)
T ss_pred EEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHH
Confidence 9999999999999999999999999999999998775 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHH
Q 000432 1404 RQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKL 1483 (1513)
Q Consensus 1404 RQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eL 1483 (1513)
||||+||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||
T Consensus 607 rQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eL 686 (694)
T TIGR03375 607 RQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQV 686 (694)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred Hhc
Q 000432 1484 LER 1486 (1513)
Q Consensus 1484 l~~ 1486 (1513)
+++
T Consensus 687 l~~ 689 (694)
T TIGR03375 687 LEA 689 (694)
T ss_pred HHH
Confidence 875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-79 Score=781.04 Aligned_cols=561 Identities=23% Similarity=0.297 Sum_probs=472.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 930 YWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITG 1009 (1513)
Q Consensus 930 ~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~ 1009 (1513)
++.|++...+... ..+++.++..+...+.+++++...|.............+...++++.++..++.+++.++....+
T Consensus 16 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 93 (582)
T PRK11176 16 LWPTIAPFKAGLI--VAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVS 93 (582)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554433322 22334444455556666666654443211111111122233344566677788888888899999
Q ss_pred HHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000432 1010 LRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIP 1089 (1513)
Q Consensus 1010 ~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv~ip 1089 (1513)
.+....++.++++++++.|.++|++...|++++|+++|++.+...+...+..++..++.+++.++++++.+|+++++++.
T Consensus 94 ~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~ 173 (582)
T PRK11176 94 GKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIV 173 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 000432 1090 VTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCF 1169 (1513)
Q Consensus 1090 ~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~ 1169 (1513)
.+++..++...+.+..++..+......+...+++.|.++|+.+||+|+.|+++.+++.+..+...+..........+...
T Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (582)
T PRK11176 174 IAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDP 253 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555556666666666666777888999999999999999999999999999998888888877777666666666
Q ss_pred HHHHHHHHHHHHHHHH-HHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccc
Q 000432 1170 RLNLLSNFVFAFSLVV-LVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTE 1248 (1513)
Q Consensus 1170 ~l~~~~~~~~~~~~~~-~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~~~ 1248 (1513)
..+++..+...+++++ ...+..|.+++|.+.+++++...+..++..+...+..++....+.+|+.++++.+++.+..
T Consensus 254 ~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~-- 331 (582)
T PRK11176 254 IIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG-- 331 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC--
Confidence 6666655544333333 2334578999999999999999999999999999999999999999999999877653311
Q ss_pred CCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCC
Q 000432 1249 ECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDIT 1328 (1513)
Q Consensus 1249 ~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~ 1328 (1513)
.. ...|..+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|++
T Consensus 332 ~~---~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~ 408 (582)
T PRK11176 332 KR---VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLR 408 (582)
T ss_pred Cc---CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhh
Confidence 11 112345689999999999876667999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHhhhceEEEcCCCccccCcHhhccCCC--CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHH
Q 000432 1329 KIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPL--VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQL 1406 (1513)
Q Consensus 1329 ~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~--~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQr 1406 (1513)
+++.+++|++|+||||||++|+|||||||... ++++|+|++++++.++++++++++|+||||.+||+|.+||||||||
T Consensus 409 ~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQR 488 (582)
T PRK11176 409 DYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQR 488 (582)
T ss_pred hcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHH
Confidence 99999999999999999999999999999864 3489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhc
Q 000432 1407 FCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1407 l~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
|+||||++++|+|||||||||+||++|++.|.+.|++..++||+|+||||++++.+||+|++||+|+|+|.|+|++|+++
T Consensus 489 i~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 489 IAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ 568 (582)
T ss_pred HHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred CChHHHHHHHHH
Q 000432 1487 EDSFFSQLIKEY 1498 (1513)
Q Consensus 1487 ~~~~f~~l~~~~ 1498 (1513)
++.|++|++++
T Consensus 569 -~~~y~~l~~~~ 579 (582)
T PRK11176 569 -NGVYAQLHKMQ 579 (582)
T ss_pred -CChHHHHHHHH
Confidence 68999998865
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-78 Score=729.52 Aligned_cols=547 Identities=21% Similarity=0.282 Sum_probs=451.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 307 AIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLR 386 (1513)
Q Consensus 307 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 386 (1513)
.+.+..|+.+..+.++.++........|.++++++|.+....... ....-....+.+..++.+++.....+..+..+.+
T Consensus 140 ~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~-~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~r 218 (716)
T KOG0058|consen 140 GLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSA-DALKRACTILLGLFLIGALANAIRGGLLQYAGER 218 (716)
T ss_pred HHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556888888999999999999999999999999887621111 1111223344445556666766666777788899
Q ss_pred HHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000432 387 LRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIF-YSNYMFMLPVQISLAIYIL-RTNLGLGSLAALAA 464 (1513)
Q Consensus 387 ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~l~~L-~~~lg~~~l~~l~~ 464 (1513)
+-..++..+|++.++....+++++.+||++++++.|++.+.+.+. ++....-..++.+.++.++ +..+-++. +.++.
T Consensus 219 v~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltl-v~~i~ 297 (716)
T KOG0058|consen 219 VVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTL-VTLIV 297 (716)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH-HHHHH
Confidence 999999999999999999999999999999999999999999875 4555555556666655443 33344433 33444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000432 465 TLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAF- 543 (1513)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~~~- 543 (1513)
+.+++.+..+++++.++..++.+++..+-.+...|.|++||+||.|+.|+...++.++.-+.-++..+|..........
T Consensus 298 ~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~ 377 (716)
T KOG0058|consen 298 VPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGS 377 (716)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhH
Confidence 4455556677788888888888888888899999999999999999999987777665433333332332222222111
Q ss_pred -HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Q 000432 544 -IFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEY 622 (1513)
Q Consensus 544 -~~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~ 622 (1513)
-+......++++.+|++++..+.+|+|.+.+++.|-..+..++..+...++.++++..|.+|+.++++.++.-+..-..
T Consensus 378 ~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~ 457 (716)
T KOG0058|consen 378 TNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTL 457 (716)
T ss_pred HHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCcc
Confidence 1222335678889999999999999999999999999999999999999999999999999999999865433322222
Q ss_pred cCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe------
Q 000432 623 VPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------ 696 (1513)
Q Consensus 623 ~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------ 696 (1513)
.|. ...+.|+|+||+|+||..++.|+|+|+||+|+|||.||+||||||||||+.++|+++|+|++|+|.+||.
T Consensus 458 ~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~ 536 (716)
T KOG0058|consen 458 APD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDIN 536 (716)
T ss_pred ccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcC
Confidence 332 4567899999999999988899999999999999999999999999999999999999999999999994
Q ss_pred -------EEEEcCCCcccCccHHHHHccCCCC-CchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHH
Q 000432 697 -------KAYVPQSPWILTGNIRENILFGNQY-DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIA 768 (1513)
Q Consensus 697 -------~ayv~Q~~~l~~~ti~eNI~fg~~~-~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lA 768 (1513)
+|+|.|||-||++||+|||+||.+. ++|+.+++.+.+..++.+..+|+|++|.|||+|..||||||||||||
T Consensus 537 ~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIA 616 (716)
T KOG0058|consen 537 HKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIA 616 (716)
T ss_pred HHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHH
Confidence 6999999999999999999999873 56778888899999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhcC-c
Q 000432 769 RAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN-I 847 (1513)
Q Consensus 769 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~~-~ 847 (1513)
|||++||.||||||+|||||++. +++.++++...++++|||+|+||++++++||+|+|+++|+++|.|+|+||++.. +
T Consensus 617 RALlr~P~VLILDEATSALDaeS-E~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~g 695 (716)
T KOG0058|consen 617 RALLRNPRVLILDEATSALDAES-EYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNG 695 (716)
T ss_pred HHHhcCCCEEEEechhhhcchhh-HHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCccc
Confidence 99999999999999999999998 566689999999999999999999999999999999999999999999999987 7
Q ss_pred cHHHHHHhhh
Q 000432 848 GFEVLVGAHS 857 (1513)
Q Consensus 848 ~~~~l~~~~~ 857 (1513)
.|.++++.+.
T Consensus 696 ly~~Lv~~q~ 705 (716)
T KOG0058|consen 696 LYAKLVQRQL 705 (716)
T ss_pred HHHHHHHHhc
Confidence 8999987653
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-80 Score=703.78 Aligned_cols=538 Identities=23% Similarity=0.326 Sum_probs=435.3
Q ss_pred HHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000432 951 SSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTV------GSSLCVLLRAMLVAITGLRTAQKLFTNMLHSV 1024 (1513)
Q Consensus 951 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~------~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~l 1024 (1513)
++..++....|...+|..+... .+..........|+.+.+ +++++.-+|+++......-+.+.+--++|+|+
T Consensus 225 ~i~rli~~~~pi~~k~iv~~lt--ap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHl 302 (790)
T KOG0056|consen 225 IIGRLINVSLPILSKWIVDELT--APDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHL 302 (790)
T ss_pred HHHHHHhhhhHHhHHHHHHhhc--CcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHH
Confidence 3444555666666677666543 133333334444444433 34677888999988899999999999999999
Q ss_pred hcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHH----H
Q 000432 1025 HRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGV-MSQVAWQVFVIFIPVTGICIWYQ----Q 1099 (1513)
Q Consensus 1025 l~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v-~~~~~~~l~lv~ip~~~l~~~~~----~ 1099 (1513)
..+.++|+-...+|+++.-+.+..+.+. .+...+.++...++-+..+++. ....+||+.+++..++.+|.++. .
T Consensus 303 h~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTe 381 (790)
T KOG0056|consen 303 HNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITE 381 (790)
T ss_pred HhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeeh
Confidence 9999999999999998888877776665 4444444444444444443333 34578888887777666665432 2
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1100 YYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVF 1179 (1513)
Q Consensus 1100 ~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~ 1179 (1513)
+-.+..|+....+.+++ ..-.+++-+.+|+|-|++|+.-.+++.+.++++++.-+........+...-+.+..+..
T Consensus 382 WRTk~rR~Mn~~~nesr----Ar~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgl 457 (790)
T KOG0056|consen 382 WRTKARRKMNNSWNESR----ARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGL 457 (790)
T ss_pred hhHHHHHHhhhhhhhhh----hhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 22222233322333333 34568899999999999999999999999999999877766555544443333333322
Q ss_pred HHHHHH-HHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCCCCCCCC
Q 000432 1180 AFSLVV-LVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPD 1258 (1513)
Q Consensus 1180 ~~~~~~-~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~~~~~~~~~~wp~ 1258 (1513)
..+.++ ++.+..+..+.|...++.+|.+++.++++|+...+..+|++.+-+||++++++.++|- .+.+..++---.
T Consensus 458 l~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eV---vd~P~a~pl~~~ 534 (790)
T KOG0056|consen 458 LAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEV---VDLPGAPPLKVT 534 (790)
T ss_pred hhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchh---hcCCCCCCcccc
Confidence 222222 2234477889999999999999999999999999999999999999999999865543 222222222235
Q ss_pred CceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhc
Q 000432 1259 VGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSR 1338 (1513)
Q Consensus 1259 ~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~ 1338 (1513)
+|.|+|+||+|.|+|+.| ||+||||+++||+.||+|||||+||||++++|+|++|.++|+|.|||+||+.+..++||++
T Consensus 535 ~G~i~fsnvtF~Y~p~k~-vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~ 613 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDPGKP-VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSS 613 (790)
T ss_pred CCeEEEEEeEEecCCCCc-eeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHh
Confidence 799999999999999865 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCccccCcHhhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCC
Q 000432 1339 LGIIPQDPTLFDGTVRGNLDPLV-QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKS 1417 (1513)
Q Consensus 1339 isiVpQdp~LF~gTIR~NLdp~~-~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~ 1417 (1513)
||+||||.+||++||.+||.+.. .++|||+.+|++.+++||-|.++|+||+|.|||+|-.||||||||+++||++||+|
T Consensus 614 IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P 693 (790)
T KOG0056|consen 614 IGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAP 693 (790)
T ss_pred cCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCC
Confidence 99999999999999999998753 79999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhcCChHHHHHHHH
Q 000432 1418 SILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKE 1497 (1513)
Q Consensus 1418 ~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~~~ 1497 (1513)
.|++||||||+||..||+.||.++.+..+++|.|+|||||+||.+||.|+|+++|+|+|.|+|+||+++++|.|++|++.
T Consensus 694 ~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~ 773 (790)
T KOG0056|consen 694 SIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQA 773 (790)
T ss_pred cEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred Hh
Q 000432 1498 YS 1499 (1513)
Q Consensus 1498 ~~ 1499 (1513)
+.
T Consensus 774 qq 775 (790)
T KOG0056|consen 774 QQ 775 (790)
T ss_pred HH
Confidence 44
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-79 Score=780.30 Aligned_cols=518 Identities=22% Similarity=0.300 Sum_probs=442.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHH
Q 000432 979 GMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGR 1058 (1513)
Q Consensus 979 ~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~ 1058 (1513)
....+.+.|+.++++..+..++...++.+.+.|...++|.+.+++++|.+++|||++..|++.+|+++|++.+++.+...
T Consensus 69 ~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geK 148 (1228)
T KOG0055|consen 69 EVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEK 148 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHH
Confidence 34567778888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhch
Q 000432 1059 LGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQ 1138 (1513)
Q Consensus 1059 l~~~~~~~~~~~~~l~v~~~~~~~l~lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~ 1138 (1513)
+..++..+.++++.+++.++..|++++++++..++.......+.+..-.....+..+.+...+...|++.+++|+.||+.
T Consensus 149 vg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~g 228 (1228)
T KOG0055|consen 149 VGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNG 228 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence 99999999999999999999999999988887777766666666666666666777777888899999999999999999
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCccCHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1139 EDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVL-VTLPEGIINPSIAGLAVTYGINLNVLQASII 1217 (1513)
Q Consensus 1139 e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~-~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~ 1217 (1513)
|++..+++.+.++...+.............-...++.....+...++. ..+..+..++|.+...+.+.+.-...+....
T Consensus 229 q~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~ 308 (1228)
T KOG0055|consen 229 EKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQAS 308 (1228)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccc
Confidence 999999999888887776554433322222222222222233333333 2233556677766555544444444555556
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCceEEEEEEEEEEcCCC-CcceeeeeEEeeCCcEEEEEc
Q 000432 1218 WNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHL-PSVLKNISCTFPGRKKVGVVG 1296 (1513)
Q Consensus 1218 ~~~~~le~~~~sveRi~e~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~-~~vLk~is~~I~~GekvgIVG 1296 (1513)
-.+..+.+..+|..+|.+..+..+.......+... .-..+|.|||+||+|+|+.+. .++|+|+||+|++||.||+||
T Consensus 309 p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~--~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG 386 (1228)
T KOG0055|consen 309 PHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRV--LSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVG 386 (1228)
T ss_pred cchHHHhccccchHHHHHHhcCCCCCCcccccCCc--ccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEEC
Confidence 66777888899999999988755432211111111 123579999999999997543 369999999999999999999
Q ss_pred CCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEcCCCccccCcHhhccCCCC-CCCHHHHHHHHHHc
Q 000432 1297 RTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLV-QYSDKQVWEALDKC 1375 (1513)
Q Consensus 1297 rTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~~-~~sdeei~~aL~~~ 1375 (1513)
+|||||||++++|.|+|+|++|+|+|||.||++++.++||++||+|.|||+||++||+|||.++. ++|++|+.+|++.+
T Consensus 387 ~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~a 466 (1228)
T KOG0055|consen 387 PSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAA 466 (1228)
T ss_pred CCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999875 79999999999999
Q ss_pred CCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEecc
Q 000432 1376 QLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAH 1455 (1513)
Q Consensus 1376 ~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAH 1455 (1513)
+.++||.++|+||||.|||+|..|||||||||||||||+|+|+||+||||||+||+++|+.+|++|++..+|+|.|+|||
T Consensus 467 na~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaH 546 (1228)
T KOG0055|consen 467 NAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAH 546 (1228)
T ss_pred cHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHhhcCEEEEEeCCEEeEecChhHHHhcCChHHHHHHHHHh
Q 000432 1456 RIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYS 1499 (1513)
Q Consensus 1456 Rl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~~~~~ 1499 (1513)
||+||+++|+|+||++|+|||.|+|+||++++ |.|++|++.+.
T Consensus 547 RLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 547 RLSTIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRLQE 589 (1228)
T ss_pred ehhhhhccCEEEEEECCEEEEecCHHHHHhcc-chHHHHHHHHh
Confidence 99999999999999999999999999999995 99999998664
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-77 Score=780.08 Aligned_cols=565 Identities=22% Similarity=0.269 Sum_probs=476.9
Q ss_pred chHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 926 GKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLV 1005 (1513)
Q Consensus 926 ~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~ 1005 (1513)
+++.++.+++...+.+ ...+++.++..++.++.|+.++...|.............+...++++.++..++.+++.++.
T Consensus 126 ~~~~~~~~~~~~~~~~--~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 203 (694)
T TIGR01846 126 GFSWFIPAIIRYRKQF--REVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLF 203 (694)
T ss_pred cHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666444332 23444556667777888888887666532111111223344555666677888899999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000432 1006 AITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFV 1085 (1513)
Q Consensus 1006 ~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~l 1085 (1513)
...+.+...+++.+++++++++|++||++.++|++++|+ +|++.+...+...+..++..++.+++.++++++++|++++
T Consensus 204 ~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 282 (694)
T TIGR01846 204 AHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTG 282 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 6999999999888888887777777778899999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 000432 1086 IFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAME 1165 (1513)
Q Consensus 1086 v~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1165 (1513)
+++..++++..+..+..+..++..+......+...+++.|+++|+.+||+|+.|+++.+++.+..+...+..........
T Consensus 283 i~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (694)
T TIGR01846 283 VVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGN 362 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76665555555555555555555555556677888999999999999999999999999999888888877777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000432 1166 WLCFRLNLLSNFVFAFSLVVL-VTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAP 1244 (1513)
Q Consensus 1166 wl~~~l~~~~~~~~~~~~~~~-~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~ 1244 (1513)
+.....+++..+...+..++. ..+..|.+++|.+.++.++...+..++..+...+.+++....+.+|+.++++.|+|.+
T Consensus 363 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 442 (694)
T TIGR01846 363 IAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPR 442 (694)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 666666666554444333332 3345789999999999999999999999999999999999999999999998876643
Q ss_pred CcccCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcC
Q 000432 1245 LVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN 1324 (1513)
Q Consensus 1245 ~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDG 1324 (1513)
.. ...+. .+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++||
T Consensus 443 ~~--~~~~~--~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 443 SA--GLAAL--PELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred CC--CCCCC--CCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 21 11111 123578999999999987666799999999999999999999999999999999999999999999999
Q ss_pred eeCCCCChHHhhhceEEEcCCCccccCcHhhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhH
Q 000432 1325 VDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPL-VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQ 1403 (1513)
Q Consensus 1325 vdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~-~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQ 1403 (1513)
+|+++++.+++|+++++|||||++|+|||||||... .+++|+++++|++.++++++++++|+||||.++|+|.+|||||
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 999999999999999999999999999999999875 3689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHH
Q 000432 1404 RQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKL 1483 (1513)
Q Consensus 1404 RQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eL 1483 (1513)
|||++||||++++|+|||||||||+||++|++.+.+.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|++|
T Consensus 599 ~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l 678 (694)
T TIGR01846 599 RQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEEL 678 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHH
Q 000432 1484 LEREDSFFSQLIKEY 1498 (1513)
Q Consensus 1484 l~~~~~~f~~l~~~~ 1498 (1513)
+++ +|.|++|++++
T Consensus 679 ~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 679 LAL-QGLYARLWQQQ 692 (694)
T ss_pred HHc-CChHHHHHHhh
Confidence 997 69999998754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-77 Score=762.85 Aligned_cols=547 Identities=24% Similarity=0.314 Sum_probs=477.3
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000432 946 ILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVH 1025 (1513)
Q Consensus 946 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll 1025 (1513)
.+++.++..++....+++++...+.............+.+.++++.++..++.+++.++....+.+....++..++++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~ 98 (571)
T TIGR02203 19 AGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLL 98 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666677776444332111111122334445667777888889999999999999999999999999999
Q ss_pred cCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1026 RAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTA 1105 (1513)
Q Consensus 1026 ~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv~ip~~~l~~~~~~~y~~~~ 1105 (1513)
+.|.++|++.+.|++++|+++|++.++..+...+..++..++.+++.++++++++|+++++++...++..++...+.+..
T Consensus 99 ~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~ 178 (571)
T TIGR02203 99 GLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRL 178 (571)
T ss_pred cCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988887777777777888888
Q ss_pred HHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1106 RELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVV 1185 (1513)
Q Consensus 1106 r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~ 1185 (1513)
++..+......++..+.+.|+++|+.+||+++.++++.+++.+..+...+..........+.....+++..+...+.+++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (571)
T TIGR02203 179 RRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFI 258 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888999999999999999999999999999999999988888777777767676666666655444333333
Q ss_pred H-HHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCceEEE
Q 000432 1186 L-VTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISF 1264 (1513)
Q Consensus 1186 ~-~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~~~~~~~~~~wp~~g~I~f 1264 (1513)
. ..+..|.+++|.+..+++|...+..++..+...+..++....+.+|+.++++.+++.+.. ..+.. +..+.|++
T Consensus 259 g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~--~~~~~i~~ 333 (571)
T TIGR02203 259 ALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---TRAIE--RARGDVEF 333 (571)
T ss_pred HHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCCC--CCCCeEEE
Confidence 2 334578999999999999999999999999999999999999999999999876654321 11111 23578999
Q ss_pred EEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEcC
Q 000432 1265 HNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQ 1344 (1513)
Q Consensus 1265 ~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQ 1344 (1513)
+||+|+|+++.+++|+|+||+|++||+|+|||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++++||||
T Consensus 334 ~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 413 (571)
T TIGR02203 334 RNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQ 413 (571)
T ss_pred EEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEcc
Confidence 99999998755679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCcHhhccCCCC--CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000432 1345 DPTLFDGTVRGNLDPLV--QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVL 1422 (1513)
Q Consensus 1345 dp~LF~gTIR~NLdp~~--~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiL 1422 (1513)
||++|+|||||||..++ +++|++++++++++++++++.++|+||||.++|+|.+||||||||||||||++++|+||+|
T Consensus 414 ~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illL 493 (571)
T TIGR02203 414 DVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILIL 493 (571)
T ss_pred CcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999998763 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhcCChHHHHHHHHH
Q 000432 1423 DEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEY 1498 (1513)
Q Consensus 1423 DEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~~~~ 1498 (1513)
|||||+||.+|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|+++ ++.|+++++++
T Consensus 494 DEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~~~ 568 (571)
T TIGR02203 494 DEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-NGLYAQLHNMQ 568 (571)
T ss_pred eCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc-CCHHHHHHHHh
Confidence 9999999999999999999999899999999999999999999999999999999999999987 68999988754
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-77 Score=710.97 Aligned_cols=514 Identities=22% Similarity=0.301 Sum_probs=450.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHH
Q 000432 979 GMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGR 1058 (1513)
Q Consensus 979 ~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~ 1058 (1513)
+...+++.+++..++..+..+.+......++.++...+|.++++++.+.+..+-+..|+|++.+.++.-++.++..+...
T Consensus 38 ~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ry 117 (559)
T COG4988 38 SLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARY 117 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 34566677777788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHH
Q 000432 1059 LGWCAFSIIQILGTIGVMSQVAWQVFVI---FIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHA 1135 (1513)
Q Consensus 1059 l~~~~~~~~~~~~~l~v~~~~~~~l~lv---~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRa 1135 (1513)
++.++.+.+..+..++.+++.+|..+++ ..|++++++++ ....++...+..-.+...+.+||-+.++|+.|+|+
T Consensus 118 LPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil---vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~ 194 (559)
T COG4988 118 LPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL---VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRA 194 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 9999999999999999999999987665 45655555443 33344444455556677889999999999999999
Q ss_pred hchHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC-CccCHHHHHHHHHHHHHHHHHH
Q 000432 1136 FDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLV-TLPE-GIINPSIAGLAVTYGINLNVLQ 1213 (1513)
Q Consensus 1136 f~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~-~~~~-g~i~~g~~g~~l~y~~~l~~~l 1213 (1513)
|+..+...++..+.-.++.+.........---+..+|++.++.++.+++... .+.. |.++....-+++..+--+..++
T Consensus 195 f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~Pl 274 (559)
T COG4988 195 FGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPL 274 (559)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHH
Confidence 9999988888887777777766666555555567788888877777766643 2334 6777777777778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEE
Q 000432 1214 ASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVG 1293 (1513)
Q Consensus 1214 ~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~Gekvg 1293 (1513)
..+...+....+...+.|.+..+++.|.+.+... ......|....+|+.+|++|+|+++. ++++|+||+++||+++|
T Consensus 275 R~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~--~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~ta 351 (559)
T COG4988 275 RDLGSFFHAAAAGEAAADKLFTLLESPVATPGSG--EKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTA 351 (559)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCc--cccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEE
Confidence 9999999999999999999999998776644321 11123333345677779999998775 79999999999999999
Q ss_pred EEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEcCCCccccCcHhhccCCCC-CCCHHHHHHHH
Q 000432 1294 VVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLV-QYSDKQVWEAL 1372 (1513)
Q Consensus 1294 IVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~~-~~sdeei~~aL 1372 (1513)
|||+||||||||+++|+|+++|++|+|.+||+|..+++.+++|+++++|||+|++|+|||||||..++ +.|||||++|+
T Consensus 352 lvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al 431 (559)
T COG4988 352 LVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAAL 431 (559)
T ss_pred EECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998765 58999999999
Q ss_pred HHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 000432 1373 DKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVT 1452 (1513)
Q Consensus 1373 ~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~ 1452 (1513)
+++++.|+++. |+||||.+||+|.+|||||+||++||||++++++++++|||||+||.|||+.|++.|.+.++++|||+
T Consensus 432 ~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~ 510 (559)
T COG4988 432 DQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLV 510 (559)
T ss_pred HHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEE
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccChhhHhhcCEEEEEeCCEEeEecChhHHHhcCChHHHHHHHHHhh
Q 000432 1453 IAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSM 1500 (1513)
Q Consensus 1453 IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~~~~~~ 1500 (1513)
||||++.+.++|+|+|||+|+++|.|+|++|.++ +|.|++|++++..
T Consensus 511 itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q~~ 557 (559)
T COG4988 511 ITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQEG 557 (559)
T ss_pred EEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHHhc
Confidence 9999999999999999999999999999999998 7999999998654
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-76 Score=747.76 Aligned_cols=521 Identities=20% Similarity=0.255 Sum_probs=425.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 930 YWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIV--LLVYTLLTVGSSLCVLLRAMLVAI 1007 (1513)
Q Consensus 930 ~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~vy~~l~~~~~~~~~~~~~~~~~ 1007 (1513)
+++|++...+. +.+.+++.++..++.++.++.+++.+|..... .. ....+ +..++++.++..++.+++.++...
T Consensus 4 l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (529)
T TIGR02868 4 ILPLLQPRTRR--LVVAILLGALALGSAVALLGVSAWLISRAAEM-PP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHD 79 (529)
T ss_pred HHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544332 22344455566677777787777776643211 11 11111 111223445567778888888889
Q ss_pred HHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000432 1008 TGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIF 1087 (1513)
Q Consensus 1008 ~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv~ 1087 (1513)
.+.+...+++.+++++++++|.+||++.++|++++|+++|++.++..+...+..++..++.+++.++++++.+|.+++++
T Consensus 80 ~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~ 159 (529)
T TIGR02868 80 AALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVL 159 (529)
T ss_pred HHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 000432 1088 IPVTGICIWY-QQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEW 1166 (1513)
Q Consensus 1088 ip~~~l~~~~-~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1166 (1513)
+..++++.++ ..++.+..++..+......+.+.+++.|+++|+++||+|+.|+++.+++.+..+...+..........+
T Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02868 160 AAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGL 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554444333 344444455555656677788999999999999999999999999999888888777766665555554
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 000432 1167 LCFRLNLLSNFVFAFSLVVL-VTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPL 1245 (1513)
Q Consensus 1167 l~~~l~~~~~~~~~~~~~~~-~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~ 1245 (1513)
......++..+...++.++. ..+..|.+++|.+..++.|...+..++..+...+.++++...+.+|+.++++.++|.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 319 (529)
T TIGR02868 240 GAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPE 319 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCC
Confidence 44444444443333333222 23457889999999999999999999999999999999999999999999987765332
Q ss_pred cccCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCe
Q 000432 1246 VTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNV 1325 (1513)
Q Consensus 1246 ~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGv 1325 (1513)
.. ...+...+|..+.|+|+||+|+|+++. ++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+
T Consensus 320 ~~-~~~~~~~~~~~~~I~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~ 397 (529)
T TIGR02868 320 GV-VPAAGALGLGKPTLELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGV 397 (529)
T ss_pred CC-CCCCcccCCCCceEEEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 11 111111234567899999999997654 5999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHhhhceEEEcCCCccccCcHhhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHH
Q 000432 1326 DITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPL-VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQR 1404 (1513)
Q Consensus 1326 dI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~-~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQR 1404 (1513)
|++++ .+++|++|+||||||+||+|||||||.++ ++++|||+++|++.|+++|+|+++|+||||.|||+|.|||||||
T Consensus 398 ~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQr 476 (529)
T TIGR02868 398 SVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGER 476 (529)
T ss_pred EhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHH
Confidence 99999 99999999999999999999999999986 46899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCh
Q 000432 1405 QLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRI 1457 (1513)
Q Consensus 1405 Qrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl 1457 (1513)
||||||||++++|+|||||||||+||++||+.|++.+++..+++|+|+||||+
T Consensus 477 QRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 477 QRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999988999999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-75 Score=744.93 Aligned_cols=547 Identities=19% Similarity=0.276 Sum_probs=456.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000432 945 IILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSV 1024 (1513)
Q Consensus 945 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~l 1024 (1513)
+++++.++..++.+..++++.+..|.... ......++..++++.++..+..++...+......+....++.++++++
T Consensus 23 ~~~~~~i~~~~~~~~~~~~~~~iid~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 99 (588)
T PRK13657 23 LLAVANVLLAAATFAEPILFGRIIDAISG---KGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERI 99 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777888888888877765321 112222333444444444444555555555666666667777999999
Q ss_pred hcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1025 HRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPT 1104 (1513)
Q Consensus 1025 l~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv~ip~~~l~~~~~~~y~~~ 1104 (1513)
+++|.++|++.+.|++++|+++|++.+...+...+..++..++..++.+++++..+|+++++++..++++..+..++.+.
T Consensus 100 ~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~ 179 (588)
T PRK13657 100 IQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRK 179 (588)
T ss_pred HhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888888888888888888889999999887777777777777777777
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1105 ARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLV 1184 (1513)
Q Consensus 1105 ~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~ 1184 (1513)
.++..+......+...+++.|+++|+.+||+|+.++.+.+++.+..+...+..........+.....+++..+...++.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (588)
T PRK13657 180 TKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILV 259 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888899999999999999999999999998888888887776665555444444444444443333333222
Q ss_pred H-HHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCceEE
Q 000432 1185 V-LVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTIS 1263 (1513)
Q Consensus 1185 ~-~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~~~~~~~~~~wp~~g~I~ 1263 (1513)
+ ...+..|.+++|.+..++.|...+..++..+...+..+.....+.+|+.++.+.+++.+.. .+..+.. +..+.|+
T Consensus 260 ~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~~~~--~~~~~I~ 336 (588)
T PRK13657 260 LGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP-PGAIDLG--RVKGAVE 336 (588)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-CCCCCcC--CCCCeEE
Confidence 2 2334588999999999999999999999999999999999999999999998765442211 1110111 2346899
Q ss_pred EEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEc
Q 000432 1264 FHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIP 1343 (1513)
Q Consensus 1264 f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVp 1343 (1513)
++||+|+|+++ +++|+|+||+++|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+|||
T Consensus 337 ~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 415 (588)
T PRK13657 337 FDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVF 415 (588)
T ss_pred EEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEe
Confidence 99999999754 46999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCcHhhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000432 1344 QDPTLFDGTVRGNLDPL-VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVL 1422 (1513)
Q Consensus 1344 Qdp~LF~gTIR~NLdp~-~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiL 1422 (1513)
|||.+|+|||||||..+ ++.+|++++++++.++++++++++|+|+||.++|+|.+||||||||||||||++++|+||||
T Consensus 416 Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliL 495 (588)
T PRK13657 416 QDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILIL 495 (588)
T ss_pred cCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999876 36899999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhcCChHHHHHHHHHh
Q 000432 1423 DEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYS 1499 (1513)
Q Consensus 1423 DEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~~~~~ 1499 (1513)
|||||+||++|++.|.+.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+++ ++.|++|+++..
T Consensus 496 DEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 496 DEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR-GGRFAALLRAQG 571 (588)
T ss_pred eCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC-CChHHHHHHHhh
Confidence 9999999999999999999988889999999999999999999999999999999999999987 699999998654
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-75 Score=745.57 Aligned_cols=566 Identities=21% Similarity=0.305 Sum_probs=470.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 928 EVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAI 1007 (1513)
Q Consensus 928 ~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~ 1007 (1513)
+.++.|++...+.. .+.+++.++..++.++.++.+....|.............++.+++++.++..++.+++.++...
T Consensus 7 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 7 AALWPFVRPYRGRV--LAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665433322 2334445566677777777777655542111111112233444555556667778888899999
Q ss_pred HHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000432 1008 TGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIF 1087 (1513)
Q Consensus 1008 ~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv~ 1087 (1513)
.+.+....++..+++++++.|.++|++...|++++|+++|++.++..+...+..++..++.+++.+++++.++|++++++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 000432 1088 IPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWL 1167 (1513)
Q Consensus 1088 ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1167 (1513)
+...++...+...+.+..+...+..........+++.|.++|+++||+|+.|+++.+++.+..+...+..........|.
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555555556666667777777778889999999999999999999999999988888887777666655555555
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Q 000432 1168 CFRLNLLSNFVFAFSLVV-LVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLV 1246 (1513)
Q Consensus 1168 ~~~l~~~~~~~~~~~~~~-~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~ 1246 (1513)
.....++..+...+..++ ...+..|.+++|.+..+..|...+..++..+...+.++.....+.+|+.++++.++|.+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 554444433322222222 2234578999999999999999999999999999999999999999999999876553211
Q ss_pred ccCCCCCCCCCCCceEEEEEEEEEEcCCC-CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCe
Q 000432 1247 TEECRPPSNWPDVGTISFHNLQIRYAEHL-PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNV 1325 (1513)
Q Consensus 1247 ~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~-~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGv 1325 (1513)
. ......+|..+.|+|+||+|+|+++. +++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||+
T Consensus 325 ~--~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~ 402 (576)
T TIGR02204 325 A--HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGV 402 (576)
T ss_pred C--CCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE
Confidence 1 11112234457899999999997543 57999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHhhhceEEEcCCCccccCcHhhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHH
Q 000432 1326 DITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLV-QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQR 1404 (1513)
Q Consensus 1326 dI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~~-~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQR 1404 (1513)
|+++++.+++|++++|+||||++|+|||||||.+++ +.+|++++++++++++.++++++|+|+||.++|+|.+||||||
T Consensus 403 ~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~ 482 (576)
T TIGR02204 403 DLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR 482 (576)
T ss_pred EHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHH
Confidence 999999999999999999999999999999998754 5789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHH
Q 000432 1405 QLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1405 Qrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
||++||||++++|+||+||||||++|.+|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|+
T Consensus 483 Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 483 QRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred HHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHH
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHH
Q 000432 1485 EREDSFFSQLIKEY 1498 (1513)
Q Consensus 1485 ~~~~~~f~~l~~~~ 1498 (1513)
++ ++.|++|++.+
T Consensus 563 ~~-~~~~~~l~~~~ 575 (576)
T TIGR02204 563 AK-GGLYARLARLQ 575 (576)
T ss_pred Hc-CChHHHHHhhc
Confidence 86 78999998653
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-74 Score=730.13 Aligned_cols=548 Identities=25% Similarity=0.363 Sum_probs=465.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 302 PSIYKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGAR 381 (1513)
Q Consensus 302 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~ 381 (1513)
.+.++..++.+|+.+.-.++..++..++.++.|++.+.++|.+--..+. ...+++++++.+..+++.++.....+...
T Consensus 142 ~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~--~tL~vl~ig~~~~~l~~~~l~~lr~~~~~ 219 (709)
T COG2274 142 LSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASR--STLTVLAIGLLLAALFEALLRLLRTYLIA 219 (709)
T ss_pred hHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667788888888888999999999999999999988654433 34566777788888888888877778888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 382 QLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSN--YMFMLPVQISLAIYILRTNLGLGSL 459 (1513)
Q Consensus 382 ~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~--~~~~~pl~i~~~l~~L~~~lg~~~l 459 (1513)
+++.|+...+...+|+|.+++|..+++++++||+++++. |.++|.+++.... .+.-.++-++.. .+++.+-+.-++
T Consensus 220 ~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l-~vm~~ys~~L~l 297 (709)
T COG2274 220 HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFL-AVMFLYSWKLTL 297 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987 9999999986432 222333333333 333434444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 460 AALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSA 539 (1513)
Q Consensus 460 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~ 539 (1513)
++++.+++.+.+..++.+..++..++.++...++.+...|.++||++||..+-|+.+..++++.-.+..+...+......
T Consensus 298 i~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~ 377 (709)
T COG2274 298 IVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLAL 377 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 66666667777778888888888899999999999999999999999999999999999998877777666665555544
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 000432 540 TSAFIFW--GSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQR 617 (1513)
Q Consensus 540 ~~~~~~~--~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~ 617 (1513)
....... ..-.-+.+++||++.++++.+|.|.++++.++...+..|+..+.+.+..+++++++.+|+.++++.|.+++
T Consensus 378 ~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~ 457 (709)
T COG2274 378 ILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQE 457 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 4433222 22234667899999999999999999999999999999999999999999999999999999999876544
Q ss_pred ccccccCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-
Q 000432 618 DAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT- 696 (1513)
Q Consensus 618 ~~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~- 696 (1513)
........+...+.|+++|++|+|++++ +++|+|+||+|++||++||||+||||||||+|+|+|.|+|.+|+|.+||.
T Consensus 458 ~~~~~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~d 536 (709)
T COG2274 458 GDKTLIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD 536 (709)
T ss_pred cccccccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Confidence 3221122234567899999999998754 48999999999999999999999999999999999999999999999994
Q ss_pred ------------EEEEcCCCcccCccHHHHHccCCCCCc-hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHH
Q 000432 697 ------------KAYVPQSPWILTGNIRENILFGNQYDS-CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQ 763 (1513)
Q Consensus 697 ------------~ayv~Q~~~l~~~ti~eNI~fg~~~~~-~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkq 763 (1513)
++||+|++.+|+|||+|||.+|.|... |+..++++.++.++++..+|.|++|.|||+|.||||||||
T Consensus 537 l~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQ 616 (709)
T COG2274 537 LNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQ 616 (709)
T ss_pred HHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHH
Confidence 599999999999999999999998755 6777777778889999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHH
Q 000432 764 RIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELL 843 (1513)
Q Consensus 764 Ri~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~ 843 (1513)
|++||||++++|+|+||||||||||+++++.|.++ +.....++|+|+||||+++++.||+|+||++|+|+++|+|+|++
T Consensus 617 rlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~-L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell 695 (709)
T COG2274 617 RLALARALLSKPKILLLDEATSALDPETEAIILQN-LLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELL 695 (709)
T ss_pred HHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHH-HHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHH
Confidence 99999999999999999999999999998888765 66777899999999999999999999999999999999999999
Q ss_pred hcCccHHHHHHh
Q 000432 844 KQNIGFEVLVGA 855 (1513)
Q Consensus 844 ~~~~~~~~l~~~ 855 (1513)
+.+|.|++++..
T Consensus 696 ~~~g~y~~l~~~ 707 (709)
T COG2274 696 AQGGLYARLYQQ 707 (709)
T ss_pred HhcChHHHHHhc
Confidence 999999988753
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-75 Score=680.96 Aligned_cols=500 Identities=21% Similarity=0.311 Sum_probs=431.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHH
Q 000432 990 LTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQI 1069 (1513)
Q Consensus 990 l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~ 1069 (1513)
+++...+.-++..+.......++-.++|.++|+++...+..-..+...|+++||+..|++.+|..+-..+...+..+...
T Consensus 67 ~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~ 146 (573)
T COG4987 67 LAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLI 146 (573)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHH
Confidence 35556666667777778888999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHH
Q 000432 1070 LGTIGVMSQVAWQVFVIFIP-VTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLS 1148 (1513)
Q Consensus 1070 ~~~l~v~~~~~~~l~lv~ip-~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~ 1148 (1513)
+++.+.+.+.+|++++.+.. ++++...+...+.+..|...+.-...++.+.+++.|.+.|....+.||++++|.+.+..
T Consensus 147 ~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~ 226 (573)
T COG4987 147 AVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEA 226 (573)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHH
Confidence 88888888999988775433 33334444455556666666666778889999999999999999999999999999999
Q ss_pred HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000432 1149 LIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFA-FSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASII-WNICNAENK 1226 (1513)
Q Consensus 1149 ~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~-~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~-~~~~~le~~ 1226 (1513)
..+...+..........|....+.++..+.+. ..++.......|..+.-.+.+++...+.....+..+. ..+.++...
T Consensus 227 ~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~ 306 (573)
T COG4987 227 TEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQV 306 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHH
Confidence 99999998888999999999988888887666 3334444355565553333333333333444444444 556788889
Q ss_pred HHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCc-eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHH
Q 000432 1227 MISVERILQYSNLPSEAPLVTEECRPPSNWPDVG-TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTL 1305 (1513)
Q Consensus 1227 ~~sveRi~e~~~~~~e~~~~~~~~~~~~~wp~~g-~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTL 1305 (1513)
..|.+|+.+..+.++|.... ++ ..|..+ .++++||+|+|+++.++||+|+||++++||||||+||||||||||
T Consensus 307 ~~Sa~Rl~~i~~q~~e~~~~-~~-----~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTl 380 (573)
T COG4987 307 IASARRLNDILDQKPEVTFP-DE-----QTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTL 380 (573)
T ss_pred HHHHHHHhhhccCCcccCCC-cc-----ccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHH
Confidence 99999999998877765432 11 112222 799999999999988899999999999999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEcCCCccccCcHhhccCCC-CCCCHHHHHHHHHHcCCcHHHHhh
Q 000432 1306 IQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPL-VQYSDKQVWEALDKCQLGDLVRAK 1384 (1513)
Q Consensus 1306 l~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~-~~~sdeei~~aL~~~~l~~~I~~l 1384 (1513)
+++|.|-|+|++|+|..+|++++.++.+++|+.|++++|.++||+||+|+||... .++||||+|+||++++|++++++.
T Consensus 381 lqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~ 460 (573)
T COG4987 381 LQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESA 460 (573)
T ss_pred HHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999754 479999999999999999999999
Q ss_pred hccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcC
Q 000432 1385 EEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSD 1464 (1513)
Q Consensus 1385 p~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~D 1464 (1513)
|+||+|.+||+|.+||||||||++|||+||+++++++|||||.+||++||++|.+.|.+..+|+|+|+||||+.-+..||
T Consensus 461 p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~d 540 (573)
T COG4987 461 PDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMD 540 (573)
T ss_pred hhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCEEeEecChhHHHhcCChHHHHHHH
Q 000432 1465 LVLVLSDGRIAEYDSPTKLLEREDSFFSQLIK 1496 (1513)
Q Consensus 1465 rIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~~ 1496 (1513)
||+|||+|+++|+|+|.+|+++ +|.|++|++
T Consensus 541 rIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 541 RIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred EEEEEECCeeeecCCHHhhhcc-ccHHHHHhc
Confidence 9999999999999999999997 899999975
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-74 Score=739.46 Aligned_cols=544 Identities=20% Similarity=0.235 Sum_probs=425.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 304 IYKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQL 383 (1513)
Q Consensus 304 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 383 (1513)
.++.+.+.+++.+++..++.++..++..+.|++++.++|.+..++... ...+.++++++++.++..++.....+...+.
T Consensus 12 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (588)
T PRK11174 12 WLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPR-EALLPPFILLILLFVLRALLAWLRERVGFKA 90 (588)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888889999999999999999999999999764221111 2223334445555566666666667777889
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000432 384 GLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIF-YSNYMFMLPVQISLAIYILRT-NLGLGSLAA 461 (1513)
Q Consensus 384 ~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~l~~L~~-~lg~~~l~~ 461 (1513)
+.++...++..+|+|.++++..+++++++|+++|++++|++++.+++. .+..++...+.+++++++++. .+.+ +++.
T Consensus 91 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l-~l~~ 169 (588)
T PRK11174 91 GQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAA-GLIL 169 (588)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 999999999999999999999999999999999999999999998875 344444444433333332222 2211 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHH----HHHHHHHHHHHHHH
Q 000432 462 LAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESL----RQVECIWLWKSLRL 537 (1513)
Q Consensus 462 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~----R~~E~~~~~~~~~~ 537 (1513)
++++++.+.+...+.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.+++++. ++.+.+..+.....
T Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK11174 170 LGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLS 249 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333344566777888888889999999999999999999999999999988887553 33333333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 538 SATSAFIFWGSPTFISVVTFGACMLLGIQLTAG---------RVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAA 608 (1513)
Q Consensus 538 ~~~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~~---------~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~ 608 (1513)
.....++... + .+.++.++++.+. +.+|.| .+++++.+...+..|+..++..+..+.++++|.+||.+
T Consensus 250 ~~~~~~~~~~-~-~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 326 (588)
T PRK11174 250 SAVLEFFASI-S-IALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVT 326 (588)
T ss_pred HHHHHHHHHH-H-HHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221111 1 1222234444433 444444 44555567788899999999999999999999999999
Q ss_pred HhcccccccccccccCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCC
Q 000432 609 YLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMA 688 (1513)
Q Consensus 609 fL~~~e~~~~~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~ 688 (1513)
+++.++.++..............|+++|++|.|++ ++++|+|+||+|++|+++||||+||||||||+++|+|++ |++
T Consensus 327 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 327 FLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred HHcCCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 99876533211111111112346999999998764 357999999999999999999999999999999999999 899
Q ss_pred cEEEECC-------------eEEEEcCCCcccCccHHHHHccCCC-CCchHHHHHHHHHhcHHHHhhccCCCCccccCCC
Q 000432 689 GTVKISG-------------TKAYVPQSPWILTGNIRENILFGNQ-YDSCKYDRTVEACALVKDFELFASGDLTEIGERG 754 (1513)
Q Consensus 689 G~i~~~g-------------~~ayv~Q~~~l~~~ti~eNI~fg~~-~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g 754 (1513)
|+|.++| .++||||+||+|++||||||++|+| .++++++++++.|+++++++.+|+|++|.|||+|
T Consensus 404 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 404 GSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred cEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCC
Confidence 9999999 4799999999999999999999975 7889999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEE
Q 000432 755 INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIA 834 (1513)
Q Consensus 755 ~~LSGGQkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~ 834 (1513)
.+|||||||||+||||+++||+||||||||||||++++++|.+ .+....++||+|+||||++.++.||+|++|++|+|+
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~-~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~ 562 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIV 562 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEe
Confidence 9999999999999999999999999999999999999998875 677777899999999999999999999999999999
Q ss_pred EecChHHHHhcCccHHHHHHhh
Q 000432 835 QAGRFEELLKQNIGFEVLVGAH 856 (1513)
Q Consensus 835 ~~g~~~~l~~~~~~~~~l~~~~ 856 (1513)
++|+|+|++++++.|.+++..+
T Consensus 563 e~G~~~eL~~~~~~y~~l~~~q 584 (588)
T PRK11174 563 QQGDYAELSQAGGLFATLLAHR 584 (588)
T ss_pred ecCCHHHHHhcchHHHHHHHHh
Confidence 9999999999999999988654
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-74 Score=733.46 Aligned_cols=563 Identities=21% Similarity=0.291 Sum_probs=459.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 929 VYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAIT 1008 (1513)
Q Consensus 929 ~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~ 1008 (1513)
.+++|++..++. +.+.+++.++..++.++.|+.+++..|..... . ....++..++++.++..+..++...+....
T Consensus 9 ~l~~~l~~~k~~--~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (585)
T TIGR01192 9 RALSYLNVHKNR--VLLIVIANITLAAITIAEPILFGRIIDAISSK-S--DVLPTLALWAGFGVFNTIAYVLVAREADRL 83 (585)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666644433 23344555667777888888887766643211 1 111222233333334444445555555566
Q ss_pred HHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000432 1009 GLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFI 1088 (1513)
Q Consensus 1009 ~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv~i 1088 (1513)
+.+...+++.+++++++++|++||+++++|++++|+++|++.+...+...+..++..++.+++.+++++.++|.++++++
T Consensus 84 ~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 163 (585)
T TIGR01192 84 AHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLM 163 (585)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777789999999999999999999999999999999999988888888888888888888889999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 000432 1089 PVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLC 1168 (1513)
Q Consensus 1089 p~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~ 1168 (1513)
.+++++.++.+.+.+..++..+......+...+++.|+++|+++||+|+.|+++.+++.+..+...+..+.......+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (585)
T TIGR01192 164 VLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALAS 243 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777887777778888999999999999999999999998888887777766555444433333333
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc
Q 000432 1169 FRLNLLSNFVFAFSLVV-LVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVT 1247 (1513)
Q Consensus 1169 ~~l~~~~~~~~~~~~~~-~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~~ 1247 (1513)
....++..+...++.++ ...+..|.+++|.+..++.|...+..++..+...+.++.....+.+|+.++.+.+++.+..
T Consensus 244 ~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~- 322 (585)
T TIGR01192 244 GLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP- 322 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC-
Confidence 33333333322222222 2234588999999999999999999999999999999999999999999998765442211
Q ss_pred cCCCCCCCC-CCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCee
Q 000432 1248 EECRPPSNW-PDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVD 1326 (1513)
Q Consensus 1248 ~~~~~~~~w-p~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvd 1326 (1513)
..+ ..+ +..+.|+++||+|+|+++. ++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||+|
T Consensus 323 --~~~-~~~~~~~~~i~~~~v~~~y~~~~-~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 398 (585)
T TIGR01192 323 --ADA-PELPNVKGAVEFRHITFEFANSS-QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGID 398 (585)
T ss_pred --ccC-CCCCCCCCeEEEEEEEEECCCCC-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEE
Confidence 111 112 2346899999999997543 58999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHhhhceEEEcCCCccccCcHhhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHH
Q 000432 1327 ITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPL-VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405 (1513)
Q Consensus 1327 I~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~-~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQ 1405 (1513)
+++++.+++|+++++|||||.+|++||||||... .+++|+|++++++.+++++++.++|+|+||.++|+|.+|||||||
T Consensus 399 ~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~q 478 (585)
T TIGR01192 399 INTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQ 478 (585)
T ss_pred hhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHH
Confidence 9999999999999999999999999999999875 467999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHh
Q 000432 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1406 rl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~ 1485 (1513)
|++|||||+++|+|||||||||+||.+|++.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|++
T Consensus 479 rl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 479 RLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999998
Q ss_pred cCChHHHHHHHHHhhcc
Q 000432 1486 REDSFFSQLIKEYSMRS 1502 (1513)
Q Consensus 1486 ~~~~~f~~l~~~~~~~~ 1502 (1513)
+ ++.|+++++.+....
T Consensus 559 ~-~~~y~~l~~~~~~~~ 574 (585)
T TIGR01192 559 K-DGRFYKLLRRSGLLT 574 (585)
T ss_pred C-CChHHHHHHhCcccc
Confidence 7 789999998775433
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-74 Score=735.45 Aligned_cols=513 Identities=21% Similarity=0.254 Sum_probs=436.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHH
Q 000432 982 IVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGW 1061 (1513)
Q Consensus 982 ~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~ 1061 (1513)
.++++++++.++..++.+++.++....+.+...+++.++++++++.|++||++.++|++++|+++|++.++..+...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~ 116 (569)
T PRK10789 37 MWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLT 116 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34455555566677777888888888999999999999999999999999999999999999999999999877777777
Q ss_pred HHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHH
Q 000432 1062 CAFSIIQILGTIGVM-SQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQED 1140 (1513)
Q Consensus 1062 ~~~~~~~~~~~l~v~-~~~~~~l~lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~ 1140 (1513)
++..++..++.++++ +.++|+++++++..+++..++.+.+.+..++..+......+.+.+++.|+++|+++||+|+.|+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~ 196 (569)
T PRK10789 117 LVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLED 196 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccH
Confidence 777766666665555 4788988877666555555666666666666666666777889999999999999999999999
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1141 RFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVV-LVTLPEGIINPSIAGLAVTYGINLNVLQASIIWN 1219 (1513)
Q Consensus 1141 ~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~-~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~ 1219 (1513)
++.+++.+..+...+..........+..........+...+..++ ...+..|.+++|.+..++.|...+..++..+...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~ 276 (569)
T PRK10789 197 RQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWM 276 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888777666655544444443333333332222222222 2234588999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCC
Q 000432 1220 ICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTG 1299 (1513)
Q Consensus 1220 ~~~le~~~~sveRi~e~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTG 1299 (1513)
+.+++....+.+|+.++++.+++.+.. ....+ +..+.|+|+||+|+|+++..++|+|+||+|+|||++||||+||
T Consensus 277 ~~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~---~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sG 351 (569)
T PRK10789 277 FNIVERGSAAYSRIRAMLAEAPVVKDG--SEPVP---EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTG 351 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccCC--CCCCC---CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCC
Confidence 999999999999999999876543211 11111 2356899999999998655579999999999999999999999
Q ss_pred CCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEcCCCccccCcHhhccCCC-CCCCHHHHHHHHHHcCCc
Q 000432 1300 SGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPL-VQYSDKQVWEALDKCQLG 1378 (1513)
Q Consensus 1300 SGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~-~~~sdeei~~aL~~~~l~ 1378 (1513)
||||||+++|.|+|+|++|+|.+||+|+++++.+++|+++++|||||++|+|||||||.++ .+++|++++++++.++++
T Consensus 352 sGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~ 431 (569)
T PRK10789 352 SGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVH 431 (569)
T ss_pred CCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999999999999999999999999999999999876 468999999999999999
Q ss_pred HHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChh
Q 000432 1379 DLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIH 1458 (1513)
Q Consensus 1379 ~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ 1458 (1513)
+++.++|+|+||.++|+|.+||||||||++||||++++|+|||||||||+||+++++.|.+.|++..+++|+|+||||++
T Consensus 432 ~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~ 511 (569)
T PRK10789 432 DDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLS 511 (569)
T ss_pred HHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred hHhhcCEEEEEeCCEEeEecChhHHHhcCChHHHHHHHHHhh
Q 000432 1459 TVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSM 1500 (1513)
Q Consensus 1459 ti~~~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~~~~~~ 1500 (1513)
++..||+|++|++|+++|.|+|++|+++ ++.|++|++.+..
T Consensus 512 ~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 512 ALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred HHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 9999999999999999999999999987 6899999986543
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-75 Score=677.02 Aligned_cols=507 Identities=23% Similarity=0.339 Sum_probs=410.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHH
Q 000432 981 NIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLG 1060 (1513)
Q Consensus 981 ~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~ 1060 (1513)
...+..|.+..+++.+|..++...+++..+++-++...+.|.+.+.+.+++|.+..+|.+-+++..-...+...+...+.
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 56678899999999999999999999999999999999999999999999999999999988888888888777777777
Q ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchH
Q 000432 1061 WCAFSIIQILGTIGVMS-QVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQE 1139 (1513)
Q Consensus 1061 ~~~~~~~~~~~~l~v~~-~~~~~l~lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e 1139 (1513)
.++..++.+......+. -..+.++++++.....|..+..+........++....+.....+..-|++.+-.+||+|+.|
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE 233 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNE 233 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccH
Confidence 77766665554443332 23444444433333333221111111111122222233444556788999999999999999
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCccCHHHHHHHHHHHHHHHHHHH
Q 000432 1140 DRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLV-----TLPEGIINPSIAGLAVTYGINLNVLQA 1214 (1513)
Q Consensus 1140 ~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~-----~~~~g~i~~g~~g~~l~y~~~l~~~l~ 1214 (1513)
++..+++...+.++.+...........+ ++....++.+....+. ....|.++.|.+.+..+...++..+++
T Consensus 234 ~~Ea~~y~~~l~~~~~~~~~~~~sl~~l----nfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~ 309 (591)
T KOG0057|consen 234 EYEASRYDGSLKTYERAGLKYSSSLAFL----NFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLN 309 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHH
Confidence 9999998888887777655544433333 3344333333222221 134667888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEE
Q 000432 1215 SIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGV 1294 (1513)
Q Consensus 1215 ~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgI 1294 (1513)
.+...++++-.++.-++-.+...+.... ..+. +.+--...|.|+|+||+|.|.|+. +||+|+||+|++||||||
T Consensus 310 ~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~----i~~~-~~~i~~~~~~I~F~dV~f~y~~k~-~iL~gvsf~I~kGekVaI 383 (591)
T KOG0057|consen 310 FLGSVYRELRQALTDMRTLFILLEVDED----IQEA-ALPIELFGGSIEFDDVHFSYGPKR-KVLKGVSFTIPKGEKVAI 383 (591)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhhhhhh----hhhc-cCCcccCCCcEEEEeeEEEeCCCC-ceecceeEEecCCCEEEE
Confidence 9999999988888777666554322111 1111 111123457899999999998764 599999999999999999
Q ss_pred EcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEcCCCccccCcHhhccCCCC-CCCHHHHHHHHH
Q 000432 1295 VGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLV-QYSDKQVWEALD 1373 (1513)
Q Consensus 1295 VGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~~-~~sdeei~~aL~ 1373 (1513)
||++||||||++++|+||+| ++|+|+|||+||++++++.+|+.||+||||..||++||-+||..++ .++|||+.+++|
T Consensus 384 vG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k 462 (591)
T KOG0057|consen 384 VGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACK 462 (591)
T ss_pred ECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHH
Confidence 99999999999999999999 9999999999999999999999999999999999999999998764 789999999999
Q ss_pred HcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Q 000432 1374 KCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTI 1453 (1513)
Q Consensus 1374 ~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~I 1453 (1513)
++++||.+.++|+||+|.|||+|..||||||||++||||+||+|+|+++|||||+||.+||+.|.+.|.....++|+|+|
T Consensus 463 ~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~I 542 (591)
T KOG0057|consen 463 RAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMI 542 (591)
T ss_pred HcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred ccChhhHhhcCEEEEEeCCEEeEecChhHHHhcCChHHHHHHHHHh
Q 000432 1454 AHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYS 1499 (1513)
Q Consensus 1454 AHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~~~~~ 1499 (1513)
+||++++++||+|+|||+|+|+|+|+|+||++ +++.|+++|..+.
T Consensus 543 vH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 543 VHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQT 587 (591)
T ss_pred EecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcccc
Confidence 99999999999999999999999999999999 5899998886543
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-73 Score=723.94 Aligned_cols=519 Identities=21% Similarity=0.280 Sum_probs=435.0
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCCCCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000432 946 ILLAQSSFQVLQVASNYWMAWASPPTSDGEPA-LGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSV 1024 (1513)
Q Consensus 946 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~l 1024 (1513)
.+++.++..++.++.++.+++..|........ .....+++.++++.++..++.+++.++....+.+...+++.++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 87 (529)
T TIGR02857 8 LGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAV 87 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777788777776653111111 12234455666677778888999999999999999999999999999
Q ss_pred hcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1025 HRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPT 1104 (1513)
Q Consensus 1025 l~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv~ip~~~l~~~~~~~y~~~ 1104 (1513)
++.|.++|++.++|++++|+++|++.++..+...+..++..++.+++.+++++..+|.++++++...++..++...+.+.
T Consensus 88 ~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~ 167 (529)
T TIGR02857 88 AALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWA 167 (529)
T ss_pred HhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999989999988888888899999999988776655444444444444455
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000432 1105 ARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSL- 1183 (1513)
Q Consensus 1105 ~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~- 1183 (1513)
.++..+......+...+++.|+++|+++||+|+.|+++.+++.+..+...+..........+.....+++..+...+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (529)
T TIGR02857 168 AQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAV 247 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555556677888999999999999999999999999988888777776665555555555555555544333322
Q ss_pred HHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCceEE
Q 000432 1184 VVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTIS 1263 (1513)
Q Consensus 1184 ~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~~~~~~~~~~wp~~g~I~ 1263 (1513)
+....+..|.+++|.+..++.|...+..++..+...+..++....+.+|+.++++.+++.+. . .+...+..+.|+
T Consensus 248 ~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~--~~~~~~~~~~i~ 322 (529)
T TIGR02857 248 YIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---K--APVTAAPAPSLE 322 (529)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---C--cCCCCCCCCeEE
Confidence 22233347889999999999999999999999999999999999999999999985543221 1 111122346899
Q ss_pred EEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEc
Q 000432 1264 FHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIP 1343 (1513)
Q Consensus 1264 f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVp 1343 (1513)
|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|+++++||
T Consensus 323 ~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~ 402 (529)
T TIGR02857 323 FSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVP 402 (529)
T ss_pred EEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEc
Confidence 99999999876557999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCcHhhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000432 1344 QDPTLFDGTVRGNLDPL-VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVL 1422 (1513)
Q Consensus 1344 Qdp~LF~gTIR~NLdp~-~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiL 1422 (1513)
|||++|+|||||||... .+++|+++++|++.++++++++++|+||||.++|+|.+||||||||++||||++++|+||+|
T Consensus 403 Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ilil 482 (529)
T TIGR02857 403 QHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLL 482 (529)
T ss_pred CCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999875 46899999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEE
Q 000432 1423 DEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVL 1469 (1513)
Q Consensus 1423 DEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVL 1469 (1513)
|||||+||++|++.|++.|++..+++|+|+||||+++++.||+|+||
T Consensus 483 DE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 483 DEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred eCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999988999999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-75 Score=661.91 Aligned_cols=491 Identities=23% Similarity=0.344 Sum_probs=419.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000432 1001 RAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGV-MSQV 1079 (1513)
Q Consensus 1001 ~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v-~~~~ 1079 (1513)
|..++...+..+.+.+--+.|.|+.++.+.|+-+..+|-+..-......-++..+...+...+..++.+....++ ....
T Consensus 2 r~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 344566777888888888999999999999999888876554444444555555666666666666665544444 3457
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHH
Q 000432 1080 AWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFH 1159 (1513)
Q Consensus 1080 ~~~l~lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~ 1159 (1513)
+|+++.+.+..+++|.++......-.-..+|....+.+...+.-.+++-+.+|+|.|+.|+.+..++...++.+.++...
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 88888887777776666544333333344555556667777888899999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000432 1160 NVSAMEWLCFRLNLLSNFVFAFSLVV-LVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSN 1238 (1513)
Q Consensus 1160 ~~~~~~wl~~~l~~~~~~~~~~~~~~-~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~ 1238 (1513)
.+....|+++.-..+........... ...+..|.++.|.+...-+|..++..+++.+...+.++.+.....|+..+.++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 88888888776655544333322222 12356889999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCcccCCCCCCCCC-CCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCC
Q 000432 1239 LPSEAPLVTEECRPPSNWP-DVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTM 1317 (1513)
Q Consensus 1239 ~~~e~~~~~~~~~~~~~wp-~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~ 1317 (1513)
.+.|.. +....++-|| ..|.|.|+||+|.|.+..| +|+|+||++++|+++||||++|+||||+.++|+|||++++
T Consensus 242 ~~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r~-iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s 317 (497)
T COG5265 242 VEAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS 317 (497)
T ss_pred cchhhc---cCCCCccccccccceEEEEEEEeeccccch-hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC
Confidence 776643 3333455674 4689999999999998864 9999999999999999999999999999999999999999
Q ss_pred cEEEEcCeeCCCCChHHhhhceEEEcCCCccccCcHhhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCC
Q 000432 1318 GSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLV-QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENG 1396 (1513)
Q Consensus 1318 G~I~IDGvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~~-~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G 1396 (1513)
|.|.|||+||+++..+.||+.||+||||.+||+.|+..|+...+ +.|++|++.|++.+++++||+++|+||||.|||+|
T Consensus 318 G~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerg 397 (497)
T COG5265 318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERG 397 (497)
T ss_pred ceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhe
Confidence 99999999999999999999999999999999999999998764 79999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeE
Q 000432 1397 ENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAE 1476 (1513)
Q Consensus 1397 ~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE 1476 (1513)
-.||||||||++|||++||+|+||+||||||+||..||+.||.+|++..+++|.++|||||+||.|+|.|+||++|+|+|
T Consensus 398 lklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~e 477 (497)
T COG5265 398 LKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVE 477 (497)
T ss_pred eeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHHhcCChHHHHHHH
Q 000432 1477 YDSPTKLLEREDSFFSQLIK 1496 (1513)
Q Consensus 1477 ~Gtp~eLl~~~~~~f~~l~~ 1496 (1513)
.|+|+||+++ +|.|++||.
T Consensus 478 rg~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 478 RGTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred cCcHHHHHHc-CChHHHHhc
Confidence 9999999998 899999985
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-71 Score=719.76 Aligned_cols=543 Identities=21% Similarity=0.258 Sum_probs=444.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 303 SIYKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQ 382 (1513)
Q Consensus 303 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~ 382 (1513)
.+++..++.+++.++...++.++..++.++.|++++.++|.+...... ...+.++++++++.++..++.....+...+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (686)
T TIGR03797 125 DLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADR--SLLVQIALALLAAAVGAAAFQLAQSLAVLR 202 (686)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555667788888888899999999999999999999987643222 223344555555566666666666777788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 383 LGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYS--NYMFMLPVQISLAIYILRTNLGLGSLA 460 (1513)
Q Consensus 383 ~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~--~~~~~~pl~i~~~l~~L~~~lg~~~l~ 460 (1513)
++.++...++..+|+|.++++..+++++++|+++++++ |++.+.+++... ..+...++.+ +++++++..-++.+++
T Consensus 203 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~li 280 (686)
T TIGR03797 203 LETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFAL-LNLGLMFYYSWKLALV 280 (686)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997 899999876532 2223333332 3333333333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 461 ALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSAT 540 (1513)
Q Consensus 461 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~ 540 (1513)
.++++++.+++...+.+..++..++.++..+++.+.+.|.++|+++||.++.|+.+.+++++..++..+...+.......
T Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (686)
T TIGR03797 281 AVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENL 360 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455556667778888888899999999999999999999999999999999888877666555544444444333
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 000432 541 SAFIFWGS--PTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRD 618 (1513)
Q Consensus 541 ~~~~~~~~--p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~ 618 (1513)
...+.... ...+.++.+|++.+.++.+|.|.++++.+++..+..|+..++..+..+++++++++|+.++++.+++.+.
T Consensus 361 ~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 440 (686)
T TIGR03797 361 LTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE 440 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 32222111 2234456778888889999999999999999999999999999999999999999999999987653322
Q ss_pred cccccCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe--
Q 000432 619 AVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-- 696 (1513)
Q Consensus 619 ~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-- 696 (1513)
.. ..+ ......|+++|++|+|+++ ++++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||.
T Consensus 441 ~~-~~~-~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i 517 (686)
T TIGR03797 441 AK-TDP-GKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDL 517 (686)
T ss_pred Cc-CCC-CCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEc
Confidence 11 111 1223579999999999753 468999999999999999999999999999999999999999999999983
Q ss_pred -----------EEEEcCCCcccCccHHHHHccCCCCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHH
Q 000432 697 -----------KAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRI 765 (1513)
Q Consensus 697 -----------~ayv~Q~~~l~~~ti~eNI~fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi 765 (1513)
++||||+|++|+|||+|||.+|+|.++++..++++.|++.++++.+|+|++|.|||+|.+|||||||||
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRi 597 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRL 597 (686)
T ss_pred CcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 599999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000432 766 QIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 766 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
+||||++++|+|+|||||||+||+++++++.+. ++.. ++|+|+||||++.++.||+|++|++|+|++.|+|+|++++
T Consensus 598 alARAll~~p~iLiLDEpTS~LD~~te~~i~~~-L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 598 LIARALVRKPRILLFDEATSALDNRTQAIVSES-LERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999988765 5543 6899999999999999999999999999999999999999
Q ss_pred CccHHHHHHh
Q 000432 846 NIGFEVLVGA 855 (1513)
Q Consensus 846 ~~~~~~l~~~ 855 (1513)
++.|.++++.
T Consensus 675 ~~~y~~l~~~ 684 (686)
T TIGR03797 675 EGLFAQLARR 684 (686)
T ss_pred CcHHHHHHHh
Confidence 9999988753
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-71 Score=723.19 Aligned_cols=543 Identities=19% Similarity=0.232 Sum_probs=445.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 304 IYKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQL 383 (1513)
Q Consensus 304 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 383 (1513)
.++..++.+++.+....++.++..++.++.|++++.++|.+...... ...+.++++++++.++..++.....+...++
T Consensus 144 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (710)
T TIGR03796 144 ALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQ--DWLRPLLLGMGLTALLQGVLTWLQLYYLRRL 221 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777778888888999999999999999999977643322 2233444555555666667777777778899
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 384 GLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFY-SNYMFMLPVQISLAIYILRTNLGLGSLAAL 462 (1513)
Q Consensus 384 ~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~l~~L~~~lg~~~l~~l 462 (1513)
+.++...++..+|+|.++++..+++++++|+++++++.| +.+.+++.. +.......+.+++.+++++..-++.+++.+
T Consensus 222 ~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 300 (710)
T TIGR03796 222 QIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGI 300 (710)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988 678887643 333333333444444444433333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 463 AATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSA 542 (1513)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~~ 542 (1513)
+.+++.+.+...+.+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++...++.+...+.........
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (710)
T TIGR03796 301 AFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILG 380 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666777888888888899999999999999999999999999999999998887777766555554444333
Q ss_pred HHHH--HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Q 000432 543 FIFW--GSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAV 620 (1513)
Q Consensus 543 ~~~~--~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~ 620 (1513)
.+.. .....+.++.+|++.+.++.+|.|.++++..++..+..|+..++..+..+.+++++++|+.++++.++..+...
T Consensus 381 ~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~ 460 (710)
T TIGR03796 381 VLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEE 460 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence 2211 11233456778888889999999999999999999999999999999999999999999999998765432211
Q ss_pred ----c--ccCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEEC
Q 000432 621 ----E--YVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKIS 694 (1513)
Q Consensus 621 ----~--~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~ 694 (1513)
. ..+.......|+++|++|+|+++ ++++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.+|
T Consensus 461 ~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 539 (710)
T TIGR03796 461 EEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFD 539 (710)
T ss_pred ccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 0 11101224579999999999753 4689999999999999999999999999999999999999999999999
Q ss_pred Ce-------------EEEEcCCCcccCccHHHHHccCCC-CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChH
Q 000432 695 GT-------------KAYVPQSPWILTGNIRENILFGNQ-YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGG 760 (1513)
Q Consensus 695 g~-------------~ayv~Q~~~l~~~ti~eNI~fg~~-~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGG 760 (1513)
|. ++||||+|++|++||||||.++.+ .+++++.++++.+++.++++.+|+|++|.|||+|.+||||
T Consensus 540 g~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGG 619 (710)
T TIGR03796 540 GIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGG 619 (710)
T ss_pred CEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHH
Confidence 83 699999999999999999998864 6788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChH
Q 000432 761 QKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFE 840 (1513)
Q Consensus 761 QkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~ 840 (1513)
|||||+||||++++|+|+||||||||||+++++++++.+ .. .++|+|+||||++.++.||+|++|++|+|++.|+|+
T Consensus 620 QrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l-~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~ 696 (710)
T TIGR03796 620 QRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNL-RR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHE 696 (710)
T ss_pred HHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHH-Hh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999998754 33 589999999999999999999999999999999999
Q ss_pred HHHhcCccHHHHH
Q 000432 841 ELLKQNIGFEVLV 853 (1513)
Q Consensus 841 ~l~~~~~~~~~l~ 853 (1513)
|+++.++.|.+++
T Consensus 697 ~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 697 ELWAVGGAYARLI 709 (710)
T ss_pred HHHHcCCcHHHHh
Confidence 9999999998875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-71 Score=716.78 Aligned_cols=538 Identities=20% Similarity=0.228 Sum_probs=423.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 309 FFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRLR 388 (1513)
Q Consensus 309 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir 388 (1513)
++.+|+.+....++.++..++..+.|++++.++|.+..+.+.. .....+..+++..++..++.....+.....+.++.
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 233 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPP--ALASAIFFMCLLSIASSVSAGLRGGSFNYTMARIN 233 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778888899999999999999999999886433211 11111122222333333333333344456777888
Q ss_pred HHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 389 AALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFY-SNYMFMLPVQISLAIYILRTNLGLGSLAALAATLT 467 (1513)
Q Consensus 389 ~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~l~~L~~~lg~~~l~~l~~~~~ 467 (1513)
..++..+|++.++.+..++++.++|+++|++++|++.+.+.+.. +..++...+++++++++++..-+..+++.++.+++
T Consensus 234 ~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l 313 (711)
T TIGR00958 234 LRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPL 313 (711)
T ss_pred HHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999987753 44444444455444444333222222333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 000432 468 VMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIF-- 545 (1513)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~~~~~-- 545 (1513)
.+.+...+.+..++..++.++..++..+.+.|.++|+++||.|++|+.+.+++++..++..+...+.....+......
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (711)
T TIGR00958 314 VFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSV 393 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677777888888888888999999999999999999999999888777655544333333222222221111
Q ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Q 000432 546 WGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPK 625 (1513)
Q Consensus 546 ~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~ 625 (1513)
......+.++.+|.+.+..+.+|+|.+++++.+...+..|+..++..+..+.+++++.+|+.++++.++..+......+
T Consensus 394 ~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~- 472 (711)
T TIGR00958 394 LGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAP- 472 (711)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCC-
Confidence 1112334456778888889999999999999999999999999999999999999999999999987654322111111
Q ss_pred CCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC----------
Q 000432 626 GRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG---------- 695 (1513)
Q Consensus 626 ~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g---------- 695 (1513)
.+....|+++|++|+|++++++++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||
T Consensus 473 ~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~ 552 (711)
T TIGR00958 473 LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHY 552 (711)
T ss_pred CCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHH
Confidence 1234579999999999864456899999999999999999999999999999999999999999999998
Q ss_pred ---eEEEEcCCCcccCccHHHHHccCCC-CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000432 696 ---TKAYVPQSPWILTGNIRENILFGNQ-YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAV 771 (1513)
Q Consensus 696 ---~~ayv~Q~~~l~~~ti~eNI~fg~~-~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal 771 (1513)
.++||||+|++|++||||||.+|.+ .++++..++++.+++.++++.+|+|++|.+||+|.+|||||||||+||||+
T Consensus 553 lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARAL 632 (711)
T TIGR00958 553 LHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARAL 632 (711)
T ss_pred HHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHH
Confidence 3699999999999999999999975 567889999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhcCccHHH
Q 000432 772 YQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEV 851 (1513)
Q Consensus 772 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 851 (1513)
+++|+|+||||||||||+++++.+.+ ....++||+|+||||++.++.||+|++|++|+|++.|+|+||+++++.|++
T Consensus 633 l~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~ 709 (711)
T TIGR00958 633 VRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKH 709 (711)
T ss_pred hcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHh
Confidence 99999999999999999999888876 223478999999999999999999999999999999999999999888876
Q ss_pred H
Q 000432 852 L 852 (1513)
Q Consensus 852 l 852 (1513)
+
T Consensus 710 l 710 (711)
T TIGR00958 710 L 710 (711)
T ss_pred c
Confidence 5
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-72 Score=761.11 Aligned_cols=569 Identities=18% Similarity=0.211 Sum_probs=456.3
Q ss_pred cccchHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 000432 923 GSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRA 1002 (1513)
Q Consensus 923 g~v~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~ 1002 (1513)
..+++....+|....... .+.+.+++.++..+.....++.+...+|.... ......+++.+++++++..++.+++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~ 118 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRK-LLGVSFVCATISGGTLPFFVSVFGVIMKNMNL---GENVNDIIFSLVLIGIFQFILSFISS 118 (1466)
T ss_pred ccccHHHHHhcCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554432222 22333344444445555555555554443210 11223445566777788889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000432 1003 MLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQ 1082 (1513)
Q Consensus 1003 ~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~ 1082 (1513)
++..+.+.+..++++.+++++++++|++|||..+.|++.+|++.|++.+...+...+..++..++.+++.++++++.+|.
T Consensus 119 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~ 198 (1466)
T PTZ00265 119 FCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNAR 198 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHH
Q 000432 1083 VFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVS 1162 (1513)
Q Consensus 1083 l~lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~ 1162 (1513)
++++++.++++++++...+.+..+...+......+...+.+.|+++|++|||+|+.|+++.+++.+..+...+.......
T Consensus 199 Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~ 278 (1466)
T PTZ00265 199 LTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANF 278 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887777666666666666666767777777778899999999999999999999999999998877777766555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhcC--------CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1163 AMEWLCFRLNLLSNFVFAFSLVVLV-TLPE--------GIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERI 1233 (1513)
Q Consensus 1163 ~~~wl~~~l~~~~~~~~~~~~~~~~-~~~~--------g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi 1233 (1513)
...+......++..+..+++.++.. .+.. +.+++|.+..++.+.+.....+..+...+..+.....|.+|+
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri 358 (1466)
T PTZ00265 279 MESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSL 358 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333344433333333333322 1223 246666655555444443444455666778899999999999
Q ss_pred HHhcCCCCCCCCcccCCCCCCCCCCCceEEEEEEEEEEcCCC-CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc
Q 000432 1234 LQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHL-PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRI 1312 (1513)
Q Consensus 1234 ~e~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~-~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl 1312 (1513)
.+.++.+++.+.. ++ ....|..+.|+|+||+|+|+... .+||+|+||+|++||++||||+||||||||+++|.|+
T Consensus 359 ~~ii~~~~~~~~~-~~---~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl 434 (1466)
T PTZ00265 359 YEIINRKPLVENN-DD---GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERL 434 (1466)
T ss_pred HHHHcCCCCCCCC-CC---CccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 9999876653211 11 11123345899999999997532 3699999999999999999999999999999999999
Q ss_pred CCCCCcEEEE-cCeeCCCCChHHhhhceEEEcCCCccccCcHhhccCCCC------------------------------
Q 000432 1313 VEPTMGSIII-DNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLV------------------------------ 1361 (1513)
Q Consensus 1313 ~ep~~G~I~I-DGvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~~------------------------------ 1361 (1513)
|+|++|+|++ ||.|+++++.+++|++|++|||+|.||++||+|||.+..
T Consensus 435 ~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (1466)
T PTZ00265 435 YDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSC 514 (1466)
T ss_pred ccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccc
Confidence 9999999999 579999999999999999999999999999999997521
Q ss_pred ----------------------------CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1362 ----------------------------QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1362 ----------------------------~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
+.+|+++++|++++++++++.++|+||||.|+++|.+||||||||++|||||
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAl 594 (1466)
T PTZ00265 515 RAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAI 594 (1466)
T ss_pred cccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhcCEEEEEeCC-------------------
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVIDSDLVLVLSDG------------------- 1472 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVLd~G------------------- 1472 (1513)
+++|+|||||||||+||+++++.|++.|++.. +++|+|+||||++++..||+|+||++|
T Consensus 595 l~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~ 674 (1466)
T PTZ00265 595 IRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDN 674 (1466)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccc
Confidence 99999999999999999999999999999875 489999999999999999999999986
Q ss_pred ----------------------------EEeEecChhHHHhcCChHHHHHHHHHh
Q 000432 1473 ----------------------------RIAEYDSPTKLLEREDSFFSQLIKEYS 1499 (1513)
Q Consensus 1473 ----------------------------~IvE~Gtp~eLl~~~~~~f~~l~~~~~ 1499 (1513)
+|+|+|||+||+++++|.|+.|++.+.
T Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 675 KENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQK 729 (1466)
T ss_pred cccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhc
Confidence 599999999999866899999997653
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-71 Score=701.37 Aligned_cols=529 Identities=19% Similarity=0.163 Sum_probs=429.0
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000432 946 ILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVH 1025 (1513)
Q Consensus 946 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll 1025 (1513)
.+++.++..++.++.|+.+++..|.............++.+++++.++..++.+++.++....+.+....++.+++++++
T Consensus 11 ~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 90 (544)
T TIGR01842 11 VGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASF 90 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566677777788777666643211111122334555666667778888999999999999999999999999999
Q ss_pred cCCcccccccChhHHHHHHhcchHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1026 RAPMAFFDSTPTGRILNRASNDQSVLDLELAG-RLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPT 1104 (1513)
Q Consensus 1026 ~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~-~l~~~~~~~~~~~~~l~v~~~~~~~l~lv~ip~~~l~~~~~~~y~~~ 1104 (1513)
+.|+.. .|..++++++|++.++..+.. .+..++..++.++ .++++++.+|+++++++..+++.+.+..++.+.
T Consensus 91 ~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~ 164 (544)
T TIGR01842 91 SATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRA 164 (544)
T ss_pred cCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999842 366789999999999988776 4444454444443 456788889988776554444444444444444
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1105 ARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLV 1184 (1513)
Q Consensus 1105 ~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~ 1184 (1513)
.++..+......+...+++.|+++|+++||+|+.|+.+.+++.+..++..+..........+......++..+...+..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (544)
T TIGR01842 165 TKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLG 244 (544)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556677788899999999999999999999999998888877766655544444433333333333322222222
Q ss_pred H-HHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCceEE
Q 000432 1185 V-LVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTIS 1263 (1513)
Q Consensus 1185 ~-~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~~~~~~~~~~wp~~g~I~ 1263 (1513)
+ ...+..|.+++|.+..++.|...+..++..+...+.+++....+.+|+.++++.++|.+. ....+ +..+.|+
T Consensus 245 ~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~---~~~~~i~ 318 (544)
T TIGR01842 245 LGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMPLP---EPEGHLS 318 (544)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCCCC---CCCCeEE
Confidence 2 233458899999999999999999999999999999999999999999999987655321 11111 2346899
Q ss_pred EEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEc
Q 000432 1264 FHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIP 1343 (1513)
Q Consensus 1264 f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVp 1343 (1513)
++||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+.+++.+.+|+++++||
T Consensus 319 ~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 398 (544)
T TIGR01842 319 VENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLP 398 (544)
T ss_pred EEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEec
Confidence 99999999765557999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCcHhhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000432 1344 QDPTLFDGTVRGNLDPLV-QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVL 1422 (1513)
Q Consensus 1344 Qdp~LF~gTIR~NLdp~~-~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiL 1422 (1513)
|||++|++|+||||..++ +++|++++++++.++++++++++|+|+||.++|+|.+||||||||++||||++++|+||||
T Consensus 399 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ilil 478 (544)
T TIGR01842 399 QDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVL 478 (544)
T ss_pred CCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999998554 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhc
Q 000432 1423 DEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1423 DEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
|||||+||++|++.|.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|+||+++
T Consensus 479 DEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 479 DEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred eCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 99999999999999999999875 68999999999999999999999999999999999999863
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-70 Score=713.49 Aligned_cols=536 Identities=24% Similarity=0.333 Sum_probs=440.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 303 SIYKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQ 382 (1513)
Q Consensus 303 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~ 382 (1513)
+.++..++.+++.+....++.++..++.++.|++++.++|.+...... ...+.++++++++.++..++.....+...+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 136 HWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAF--ETLWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677888888888889999999999999999999987533222 223334444444555566666666677788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 383 LGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYS--NYMFMLPVQISLAIYILRTNLGLGSLA 460 (1513)
Q Consensus 383 ~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~--~~~~~~pl~i~~~l~~L~~~lg~~~l~ 460 (1513)
++.++...++..+|+|.++++..+ .++++|++++++ +|++.+.+++... ..+...+..++..+ +++..-++.+++
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~l~li 290 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLL-VIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHhHHHHH
Confidence 999999999999999999999987 678999999999 7999999987532 22333333333333 333322333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 461 ALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSAT 540 (1513)
Q Consensus 461 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~ 540 (1513)
.++++++.+++...+.+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+.......
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666677788888889999999999999999999999999999999999999988877776666655555444
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 000432 541 SAFIFWGS--PTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRD 618 (1513)
Q Consensus 541 ~~~~~~~~--p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~ 618 (1513)
...+.... ...+.++++|++.+..+.+|+|.+++++.++..+..|+..++..+..+.+++++.+|+.++++.++..+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 33222221 2234456788888899999999999999999999999999999999999999999999999987654322
Q ss_pred cccccCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC---
Q 000432 619 AVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--- 695 (1513)
Q Consensus 619 ~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g--- 695 (1513)
.....+.......|+++|++|+|+++ ++++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||
T Consensus 451 ~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l 529 (694)
T TIGR03375 451 GTRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDI 529 (694)
T ss_pred CCCCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEh
Confidence 11111111234579999999999743 46899999999999999999999999999999999999999999999998
Q ss_pred ----------eEEEEcCCCcccCccHHHHHccCCC-CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHH
Q 000432 696 ----------TKAYVPQSPWILTGNIRENILFGNQ-YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQR 764 (1513)
Q Consensus 696 ----------~~ayv~Q~~~l~~~ti~eNI~fg~~-~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqR 764 (1513)
.++||||+|++|++||+|||.++++ .+++++.++++.|++.++++.+|+|++|.|||+|.+||||||||
T Consensus 530 ~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQR 609 (694)
T TIGR03375 530 RQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQA 609 (694)
T ss_pred hhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHH
Confidence 4699999999999999999999987 78899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHh
Q 000432 765 IQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLK 844 (1513)
Q Consensus 765 i~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~ 844 (1513)
++||||++++|+|+|||||||+||+++++++.+ .+....+++|+|+||||+++++.||+|++|++|++++.|+|+|+++
T Consensus 610 lalARall~~p~iliLDE~Ts~LD~~te~~i~~-~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 610 VALARALLRDPPILLLDEPTSAMDNRSEERFKD-RLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 999999999999999999999999999888865 5777778999999999999999999999999999999999999986
Q ss_pred c
Q 000432 845 Q 845 (1513)
Q Consensus 845 ~ 845 (1513)
+
T Consensus 689 ~ 689 (694)
T TIGR03375 689 A 689 (694)
T ss_pred H
Confidence 4
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-70 Score=711.16 Aligned_cols=542 Identities=23% Similarity=0.330 Sum_probs=435.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 305 YKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLG 384 (1513)
Q Consensus 305 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 384 (1513)
++..++.+++.++...++.++..++.++.|++++.++|.+...... ...+.++++++++.++..++.....+...+++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (708)
T TIGR01193 147 FIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMM--GTLGIISIGLIIAYIIQQILSYIQIFLLNVLG 224 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777777788888999999999999999999977543221 22233444444555566666666666778899
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 385 LRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSN--YMFMLPVQISLAIYILRTNLGLGSLAAL 462 (1513)
Q Consensus 385 ~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~--~~~~~pl~i~~~l~~L~~~lg~~~l~~l 462 (1513)
.++...++..+|+|.++++..++++.++|+++++++ |++.+.+++.... .+...+..++..+++++....+ +++.+
T Consensus 225 ~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l-~li~l 302 (708)
T TIGR01193 225 QRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLL-FLLSL 302 (708)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHH
Confidence 999999999999999999999999999999999998 9999998765332 2223333333333333333322 33333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 463 AATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSA 542 (1513)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~~ 542 (1513)
+++++.+.+...+.+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+.........
T Consensus 303 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (708)
T TIGR01193 303 LSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQ 382 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445556677888888889999999999999999999999999999999988887765544444333333322222
Q ss_pred HHH--HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Q 000432 543 FIF--WGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAV 620 (1513)
Q Consensus 543 ~~~--~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~ 620 (1513)
.+. ......+.++++|++.+..+.+|+|.++++..+...+..|+..+...+..+.+++++.+|+.++++.+++.+...
T Consensus 383 ~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~ 462 (708)
T TIGR01193 383 AIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK 462 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence 111 111223456778999999999999999999999999999999999999999999999999999998765432221
Q ss_pred cccCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe----
Q 000432 621 EYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT---- 696 (1513)
Q Consensus 621 ~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~---- 696 (1513)
...+.....+.|+++|++|+|++ ++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.
T Consensus 463 ~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 540 (708)
T TIGR01193 463 KRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKD 540 (708)
T ss_pred cccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHH
Confidence 11111223457999999999963 358999999999999999999999999999999999999999999999984
Q ss_pred ---------EEEEcCCCcccCccHHHHHccCC--CCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHH
Q 000432 697 ---------KAYVPQSPWILTGNIRENILFGN--QYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRI 765 (1513)
Q Consensus 697 ---------~ayv~Q~~~l~~~ti~eNI~fg~--~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi 765 (1513)
++||||+|++|++||+|||.+|. ..++++..++++.+++.++++.+|+|++|.|||+|.+|||||||||
T Consensus 541 ~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRi 620 (708)
T TIGR01193 541 IDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRI 620 (708)
T ss_pred cCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHH
Confidence 69999999999999999999983 3577888999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000432 766 QIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 766 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
+||||++++|+|+|||||||+||+++++++.+. +.. ++++|+|+||||++.+..||+|++|++|++++.|+|+|+++.
T Consensus 621 alARall~~p~iliLDE~Ts~LD~~te~~i~~~-L~~-~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 621 ALARALLTDSKVLILDESTSNLDTITEKKIVNN-LLN-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHH-HHH-hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999998888764 454 478999999999999999999999999999999999999999
Q ss_pred CccHHHHHH
Q 000432 846 NIGFEVLVG 854 (1513)
Q Consensus 846 ~~~~~~l~~ 854 (1513)
++.|.++++
T Consensus 699 ~~~y~~l~~ 707 (708)
T TIGR01193 699 NGFYASLIH 707 (708)
T ss_pred CCcHHHHhh
Confidence 999988763
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-68 Score=686.06 Aligned_cols=545 Identities=19% Similarity=0.235 Sum_probs=433.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 305 YKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLG 384 (1513)
Q Consensus 305 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 384 (1513)
++.+++.+++.++...+..++..++..+.|++++.++|.+..+.... ....+++.++++.++..++.....+...+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 93 (582)
T PRK11176 16 LWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRS--VLKWMPLVVIGLMILRGITSFISSYCISWVS 93 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566777777777777888888889999999998776432211 1122222233344445555555555667888
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 385 LRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFY-SNYMFMLPVQISLAIYILRTNLGLGSLAALA 463 (1513)
Q Consensus 385 ~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~l~~L~~~lg~~~l~~l~ 463 (1513)
.++...++..+|+|.++++...+.+.++|++++++++|++++.+++.. +..++..++.+++.+++++..-++.+++.++
T Consensus 94 ~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~ 173 (582)
T PRK11176 94 GKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIV 173 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999987643 3344444444544444443332232333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 464 ATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAF 543 (1513)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~~~ 543 (1513)
++++...+.....+..++..++.++..++..+...|.++|+++||.+++|+.+.+++++..++-.+...+..........
T Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (582)
T PRK11176 174 IAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDP 253 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444556777778888888889999999999999999999999999998888877655444444333333322222
Q ss_pred HHH--HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Q 000432 544 IFW--GSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVE 621 (1513)
Q Consensus 544 ~~~--~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~ 621 (1513)
+.. .....+.++.++++.+..+.+++|.+.++.+++..+..|+..+...+..+.+++.+++|+.++++.++.++....
T Consensus 254 ~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~ 333 (582)
T PRK11176 254 IIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKR 333 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCc
Confidence 111 112334456677788888999999999999999999999999999999999999999999999986654322111
Q ss_pred ccCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-----
Q 000432 622 YVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT----- 696 (1513)
Q Consensus 622 ~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~----- 696 (1513)
. .......|+++|++|+|+++ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 334 ~--~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~ 410 (582)
T PRK11176 334 V--IERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDY 410 (582)
T ss_pred C--CCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhc
Confidence 1 11223469999999999753 468999999999999999999999999999999999999999999999984
Q ss_pred --------EEEEcCCCcccCccHHHHHccCCC--CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 000432 697 --------KAYVPQSPWILTGNIRENILFGNQ--YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766 (1513)
Q Consensus 697 --------~ayv~Q~~~l~~~ti~eNI~fg~~--~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~ 766 (1513)
++||||+|++|++||+|||++|++ +++++++++++.+++.++++.+|+|++|.+||+|.+|||||||||+
T Consensus 411 ~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~ 490 (582)
T PRK11176 411 TLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA 490 (582)
T ss_pred CHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHH
Confidence 499999999999999999999864 6788999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhcC
Q 000432 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846 (1513)
Q Consensus 767 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~~ 846 (1513)
||||+|++|+|+||||||||||+++++.+++ .+....+++|+|+||||++.++.||+|++|++|++++.|+|+++++.+
T Consensus 491 LARall~~~~ililDEptsaLD~~t~~~i~~-~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~ 569 (582)
T PRK11176 491 IARALLRDSPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQN 569 (582)
T ss_pred HHHHHHhCCCEEEEECccccCCHHHHHHHHH-HHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 9999999999999999999999999988875 566666789999999999999999999999999999999999999999
Q ss_pred ccHHHHHHh
Q 000432 847 IGFEVLVGA 855 (1513)
Q Consensus 847 ~~~~~l~~~ 855 (1513)
+.|++++..
T Consensus 570 ~~y~~l~~~ 578 (582)
T PRK11176 570 GVYAQLHKM 578 (582)
T ss_pred ChHHHHHHH
Confidence 999998764
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-68 Score=680.88 Aligned_cols=541 Identities=19% Similarity=0.259 Sum_probs=422.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 307 AIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLR 386 (1513)
Q Consensus 307 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 386 (1513)
.+++.+++.++...++.++..++..+.|+++..++|.+.............+++++++..++..++.....+...+.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (592)
T PRK10790 16 AYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVG 95 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777888888999999999999999999977543222211112223334444445555666666677788999
Q ss_pred HHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000432 387 LRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNY-MFMLPVQISLAIYIL-RTNLGLGSLAALAA 464 (1513)
Q Consensus 387 ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~-~~~~pl~i~~~l~~L-~~~lg~~~l~~l~~ 464 (1513)
+...++..+|+|.++.+..++.+.++|+++|++++|++.+.+++..... +....+.+++++.++ +..+.+ .++.+++
T Consensus 96 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~li~l~~ 174 (592)
T PRK10790 96 VVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRM-ALVAIMI 174 (592)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 9999999999999999999999999999999999999999987754332 222222222222222 222222 2222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 000432 465 TLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATS--- 541 (1513)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~--- 541 (1513)
+++.+.+.....+..++..++..+..++..+...|.++|+++||.|+.|+.+.+++.+..++..+...+........
T Consensus 175 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (592)
T PRK10790 175 FPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRP 254 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223334445566666677777778888889999999999999999999999998876654444322222222111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Q 000432 542 -AFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAV 620 (1513)
Q Consensus 542 -~~~~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~ 620 (1513)
..++.....++ ++.++++ ...+.++.|.+++++.++..+..|+..++..+..+.++++|.+||.++++.++.+....
T Consensus 255 ~~~~~~~~~~~~-~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~ 332 (592)
T PRK10790 255 LLSLFSALILCG-LLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND 332 (592)
T ss_pred HHHHHHHHHHHH-HHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC
Confidence 11111111111 2222233 46788999999999999999999999999999999999999999999998654322211
Q ss_pred cccCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe----
Q 000432 621 EYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT---- 696 (1513)
Q Consensus 621 ~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~---- 696 (1513)
. . ......|+++|++|+|++ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.
T Consensus 333 ~-~--~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~ 407 (592)
T PRK10790 333 D-R--PLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSS 407 (592)
T ss_pred c-c--CCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhh
Confidence 1 1 112356999999999974 357999999999999999999999999999999999999999999999984
Q ss_pred ---------EEEEcCCCcccCccHHHHHccCCCCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 000432 697 ---------KAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQI 767 (1513)
Q Consensus 697 ---------~ayv~Q~~~l~~~ti~eNI~fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~l 767 (1513)
++||||+|++|++||+|||.+|++.++++.+++++++++.++++.+|+|++|.+||+|.+|||||||||+|
T Consensus 408 ~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRial 487 (592)
T PRK10790 408 LSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLAL 487 (592)
T ss_pred CCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHH
Confidence 69999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhcCc
Q 000432 768 ARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNI 847 (1513)
Q Consensus 768 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~~~ 847 (1513)
|||+|++|+|+|||||||+||+++++++.+ .++...+++|+|+||||++.++.||+|++|++|++++.|+|+|+++.++
T Consensus 488 ARaLl~~~~illlDEpts~LD~~t~~~i~~-~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~ 566 (592)
T PRK10790 488 ARVLVQTPQILILDEATANIDSGTEQAIQQ-ALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQG 566 (592)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 999999999999999999999999888864 5666667899999999999999999999999999999999999999999
Q ss_pred cHHHHHHhh
Q 000432 848 GFEVLVGAH 856 (1513)
Q Consensus 848 ~~~~l~~~~ 856 (1513)
.|.+++..+
T Consensus 567 ~y~~l~~~~ 575 (592)
T PRK10790 567 RYWQMYQLQ 575 (592)
T ss_pred HHHHHHHHH
Confidence 999998654
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-68 Score=679.28 Aligned_cols=544 Identities=20% Similarity=0.256 Sum_probs=443.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 306 KAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGL 385 (1513)
Q Consensus 306 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 385 (1513)
+.+++.+++.+++..++.++..++....|++++.+++........ ...+.++++++++.++..++.....+...+.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 83 (571)
T TIGR02203 6 WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDR--SVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSN 83 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888899999999999999999999999866543221 122223333444555555665556666788999
Q ss_pred HHHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 386 RLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFY-SNYMFMLPVQISLAIYILRTNLGLGSLAALAA 464 (1513)
Q Consensus 386 ~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~l~~L~~~lg~~~l~~l~~ 464 (1513)
++...++..+|+|.++.+....++.+.|+++++++.|++++.+++.. +..++...+.+++++++++..-++.+++.+++
T Consensus 84 ~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~ 163 (571)
T TIGR02203 84 KVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVM 163 (571)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987753 33444444444444443333222223333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 465 TLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFI 544 (1513)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~~~~ 544 (1513)
+++.+.+.....+..++..++..+..+++.+.++|.++|+++||.++.|+.+.+++++..++..+...+..........+
T Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (571)
T TIGR02203 164 LPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPI 243 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556677788888889999999999999999999999999999999998888877666655544444443333322
Q ss_pred HHHH--HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Q 000432 545 FWGS--PTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEY 622 (1513)
Q Consensus 545 ~~~~--p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~ 622 (1513)
.... ...+.++.+|++.+..+.+|+|.++++..++..+..|+..+...+..+.+++++.+|+.++++.++..+....
T Consensus 244 ~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~- 322 (571)
T TIGR02203 244 TQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTR- 322 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-
Confidence 2211 1234456778888889999999999999999999999999999999999999999999999986654332111
Q ss_pred cCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe------
Q 000432 623 VPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------ 696 (1513)
Q Consensus 623 ~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------ 696 (1513)
+.......|+++|++|+|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|+|.++|.
T Consensus 323 -~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~ 400 (571)
T TIGR02203 323 -AIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT 400 (571)
T ss_pred -CCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcC
Confidence 111233579999999999754 468999999999999999999999999999999999999999999999983
Q ss_pred -------EEEEcCCCcccCccHHHHHccCC--CCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 000432 697 -------KAYVPQSPWILTGNIRENILFGN--QYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQI 767 (1513)
Q Consensus 697 -------~ayv~Q~~~l~~~ti~eNI~fg~--~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~l 767 (1513)
++||||+|++|++||||||.+++ +.++++.+++++.|++.++++.+|+|++|.|||+|.+|||||||||+|
T Consensus 401 ~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaL 480 (571)
T TIGR02203 401 LASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAI 480 (571)
T ss_pred HHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHH
Confidence 69999999999999999999996 478899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhcCc
Q 000432 768 ARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNI 847 (1513)
Q Consensus 768 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~~~ 847 (1513)
|||+|++|+|++||||||+||+++++++.+ .+....++||+|+|||+.+.++.||+|++|++|++++.|+|+++++.++
T Consensus 481 ARall~~~~illLDEpts~LD~~~~~~i~~-~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~ 559 (571)
T TIGR02203 481 ARALLKDAPILILDEATSALDNESERLVQA-ALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNG 559 (571)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHH-HHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCC
Confidence 999999999999999999999999998865 5666678899999999999999999999999999999999999998888
Q ss_pred cHHHHHHh
Q 000432 848 GFEVLVGA 855 (1513)
Q Consensus 848 ~~~~l~~~ 855 (1513)
.|.+++..
T Consensus 560 ~~~~~~~~ 567 (571)
T TIGR02203 560 LYAQLHNM 567 (571)
T ss_pred HHHHHHHH
Confidence 88887653
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-68 Score=678.94 Aligned_cols=533 Identities=16% Similarity=0.105 Sum_probs=412.2
Q ss_pred HHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 928 EVYWSYLT-AVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVA 1006 (1513)
Q Consensus 928 ~~~~~y~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~ 1006 (1513)
+..++|++ +.++.. .+.+++.++..+..++.+++++...+.... ... ..+..++++.++..++.++..++..
T Consensus 6 ~~l~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (555)
T TIGR01194 6 GEILALLRSPFPAIT--AFSIALGLAGGLAIIALLASINNAIHEENF--LGQ---GSLFSFGGLCLLALLFRIGADIFPA 78 (555)
T ss_pred HHHHHHHhhccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--ccc---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555665 443332 233344445555666667777755443110 000 1122344455666778888999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000432 1007 ITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVI 1086 (1513)
Q Consensus 1007 ~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv 1086 (1513)
..+.+...++|.++++++++.|++||++.++|++++|+++|++.++..+.. +..++..++.+++.++++++.+|.++++
T Consensus 79 ~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li 157 (555)
T TIGR01194 79 YAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAI 157 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999999998864 7777888888888999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHH--HHHHHHHHHHHhhchhHHHHHHHH
Q 000432 1087 FIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQED--RFTNANLSLIDNHSRPWFHNVSAM 1164 (1513)
Q Consensus 1087 ~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~--~f~~~~~~~~d~~~~~~~~~~~~~ 1164 (1513)
++.++++.+++..+..+..++..+......+.+.+++.|.+.|+++||+|+.++ ...+++.+..+...+.........
T Consensus 158 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
T TIGR01194 158 TISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIF 237 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 666555555544444444455555556667889999999999999999999954 344555555554444333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000432 1165 EWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAP 1244 (1513)
Q Consensus 1165 ~wl~~~l~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~ 1244 (1513)
.......+++..+...+..++. ...|.++.|.+..++.|...+..++..+...+.+++....|.+|+.++++.+.+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~ 315 (555)
T TIGR01194 238 IAAENFGQLLFFLLIGCALFAA--AMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPE 315 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 2222222222222111111111 12367899999999999999999999999999999999999999999976432211
Q ss_pred Ccc--cC-CCC--CCCCCCCceEEEEEEEEEEcCC---CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Q 000432 1245 LVT--EE-CRP--PSNWPDVGTISFHNLQIRYAEH---LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPT 1316 (1513)
Q Consensus 1245 ~~~--~~-~~~--~~~wp~~g~I~f~nvsf~Y~~~---~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~ 1316 (1513)
... ++ ... .+.....+.|+|+||+|+|++. .+++|+|+||+|++||++||||+||||||||+++|.|+++|+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~ 395 (555)
T TIGR01194 316 PELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ 395 (555)
T ss_pred ccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 110 00 000 0111234689999999999753 236999999999999999999999999999999999999999
Q ss_pred CcEEEEcCeeCCCCChHHhhhceEEEcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCC
Q 000432 1317 MGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENG 1396 (1513)
Q Consensus 1317 ~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G 1396 (1513)
+|+|.+||+|+++++.+++|+++++|||||++|++|+|+|+.+ +.++++++++++.++++++++++|+||||.
T Consensus 396 ~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~--~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~----- 468 (555)
T TIGR01194 396 EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGE--HASLDNAQQYLQRLEIADKVKIEDGGFSTT----- 468 (555)
T ss_pred CcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccccc--chhHHHHHHHHHHcCCchhhcccccccCCc-----
Confidence 9999999999999999999999999999999999999999754 678999999999999999999999999995
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHH-h-cCCcEEEEeccChhhHhhcCEEEEEeCCEE
Q 000432 1397 ENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQ-E-FKDRTVVTIAHRIHTVIDSDLVLVLSDGRI 1474 (1513)
Q Consensus 1397 ~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~-~-~~~~TvI~IAHRl~ti~~~DrIlVLd~G~I 1474 (1513)
.+||||||||++||||++++|+|||||||||+||++|++.|++.+.+ . .+++|+|+||||++++..||+|+||++|++
T Consensus 469 ~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i 548 (555)
T TIGR01194 469 TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCI 548 (555)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEE
Confidence 78999999999999999999999999999999999999999887643 3 368999999999999999999999999999
Q ss_pred eEe
Q 000432 1475 AEY 1477 (1513)
Q Consensus 1475 vE~ 1477 (1513)
+|.
T Consensus 549 ~~~ 551 (555)
T TIGR01194 549 VKD 551 (555)
T ss_pred EEe
Confidence 975
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-67 Score=672.13 Aligned_cols=534 Identities=25% Similarity=0.345 Sum_probs=422.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 312 IRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRLRAAL 391 (1513)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L 391 (1513)
++ .+....++.++..++....|.++..+++.+... . .....+...+++..++..++.....+...+.+.++...+
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l 87 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD-L---GELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADL 87 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 777888888899999999999999999987611 1 111222222223333444444445555666778999999
Q ss_pred HHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000432 392 ISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMFM-LPVQISLAIYILRTNLGL-GSLAALAATLTVM 469 (1513)
Q Consensus 392 ~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~-~pl~i~~~l~~L~~~lg~-~~l~~l~~~~~~~ 469 (1513)
+..+|+|.++++...++++++|++++++++|++.+.+.+........ .++.++..+++++ .+.| .+++.++..+++.
T Consensus 88 r~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~~~~~~~~~~ 166 (567)
T COG1132 88 RRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLF-SLSWRLALILLLILPLLA 166 (567)
T ss_pred HHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998876532222 2333333332222 2222 1222222223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q 000432 470 TCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAF--IFWG 547 (1513)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~~~--~~~~ 547 (1513)
.....+.++.++...+..+..++..+.+.|.++|+++||.|+.|+...++.++..+...+...+.......... .+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (567)
T COG1132 167 LVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLS 246 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555557777888888899999999999999999999999988777666544443332222222222211 1222
Q ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCC
Q 000432 548 SPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGR 627 (1513)
Q Consensus 548 ~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~ 627 (1513)
....+.++.++.+.+..+.+++|.+.+++.++..+..|+..+...+..+.++..|.+|+.++++.++...+.... ...
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~~ 324 (567)
T COG1132 247 SLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LKD 324 (567)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CCC
Confidence 233455566777778888899999999999999999999999999999999999999999999985532221111 112
Q ss_pred CcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-----------
Q 000432 628 SEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT----------- 696 (1513)
Q Consensus 628 ~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~----------- 696 (1513)
....|+++|++|+|++ ++++|+|+||++++||++|||||+|||||||+++|+|+++|++|+|.+||.
T Consensus 325 ~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr 402 (567)
T COG1132 325 TIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLR 402 (567)
T ss_pred CCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHH
Confidence 3456999999999975 368999999999999999999999999999999999999999999999984
Q ss_pred --EEEEcCCCcccCccHHHHHccCCC-CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhc
Q 000432 697 --KAYVPQSPWILTGNIRENILFGNQ-YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQ 773 (1513)
Q Consensus 697 --~ayv~Q~~~l~~~ti~eNI~fg~~-~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~ 773 (1513)
++||||+|++|++||+|||.+|+| .++++..++++.+++++.++.+|+|++|.|||+|.+|||||||||+||||+++
T Consensus 403 ~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~ 482 (567)
T COG1132 403 KRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR 482 (567)
T ss_pred HhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 599999999999999999999998 47788999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhcCccHHHHH
Q 000432 774 DADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLV 853 (1513)
Q Consensus 774 ~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~l~ 853 (1513)
||+|++||||||+||+++++.|.+ .+..+.++||+|+|+||++++.+||+|+||++|+|++.|+|+||+++++.|.+++
T Consensus 483 ~~~ILILDEaTSalD~~tE~~I~~-~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~ 561 (567)
T COG1132 483 NPPILILDEATSALDTETEALIQD-ALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLY 561 (567)
T ss_pred CCCEEEEeccccccCHHhHHHHHH-HHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHH
Confidence 999999999999999999888864 5666678899999999999999999999999999999999999999999999998
Q ss_pred Hhh
Q 000432 854 GAH 856 (1513)
Q Consensus 854 ~~~ 856 (1513)
..+
T Consensus 562 ~~~ 564 (567)
T COG1132 562 QAQ 564 (567)
T ss_pred HHh
Confidence 754
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-67 Score=669.57 Aligned_cols=541 Identities=22% Similarity=0.259 Sum_probs=421.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 308 IFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLT-DKKS--RSLESGYLLALAFLGAKMVETIAQRQWIFGARQLG 384 (1513)
Q Consensus 308 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~--~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 384 (1513)
+.+.+++.++++.++.++..++....|++++.++|... .+.. .. ...+..++++++..++..++.....+...+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYS-FNYMLPAAGVRGAAIGRTAGRYGERLVSHDAT 88 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhh-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888999999999999999999999653 2211 01 11111222333344555566666666777899
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 000432 385 LRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFY-SNYMFMLPVQISLAIYIL-RTNLGLGSLAAL 462 (1513)
Q Consensus 385 ~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~l~~L-~~~lg~~~l~~l 462 (1513)
.++...++..+|+|.++++..+++++++|++++++++|++++.+++.. +..+....+.++++++++ +..+.++.++.+
T Consensus 89 ~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~ 168 (574)
T PRK11160 89 FRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGG 168 (574)
T ss_pred HHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998754 333333333333333322 222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 463 AATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSA 542 (1513)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~~ 542 (1513)
++.++...+...+.+..++..++.++..++..+.+.|.++|+++||.|+.|+.+.+++++..++..+...+.....+...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (574)
T PRK11160 169 ILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQ 248 (574)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222234455666777778888888899999999999999999999999998888766555444444443333322
Q ss_pred HHHH--HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 000432 543 FIFW--GSPTFISVVTFGACMLLGIQLTAGRVLSALATFRM-LQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDA 619 (1513)
Q Consensus 543 ~~~~--~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~-L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~ 619 (1513)
.+.. .....+.++.+|++. ..+.+++|.+++++.+... ...|+..++..+..+.++++|.+||.++++.++..++.
T Consensus 249 ~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~ 327 (574)
T PRK11160 249 ALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFP 327 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 2211 112233345566666 4778999998888776544 45688889999999999999999999999876432211
Q ss_pred ccccCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe---
Q 000432 620 VEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT--- 696 (1513)
Q Consensus 620 ~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~--- 696 (1513)
....+ ......|+++|++|+|+++ ++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus 328 ~~~~~-~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~ 405 (574)
T PRK11160 328 TTSTA-AADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIA 405 (574)
T ss_pred cccCC-CCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhh
Confidence 11111 1223579999999999753 357999999999999999999999999999999999999999999999984
Q ss_pred ----------EEEEcCCCcccCccHHHHHccCCC-CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHH
Q 000432 697 ----------KAYVPQSPWILTGNIRENILFGNQ-YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRI 765 (1513)
Q Consensus 697 ----------~ayv~Q~~~l~~~ti~eNI~fg~~-~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi 765 (1513)
++||||+|++|++||+|||.+|++ .++++..++++.+++.++++. |+|++|.|||+|.+|||||||||
T Consensus 406 ~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRi 484 (574)
T PRK11160 406 DYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRL 484 (574)
T ss_pred hCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHH
Confidence 599999999999999999999976 577888999999999999999 99999999999999999999999
Q ss_pred HHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000432 766 QIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 766 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
+||||++++|+|+|||||||+||+++++++.+ .+....+++|+|+||||++.++.||+|++|++|++++.|+|+|++++
T Consensus 485 alARall~~~~ililDE~ts~lD~~t~~~i~~-~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 563 (574)
T PRK11160 485 GIARALLHDAPLLLLDEPTEGLDAETERQILE-LLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ 563 (574)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc
Confidence 99999999999999999999999999888864 56666789999999999999999999999999999999999999999
Q ss_pred CccHHHHHH
Q 000432 846 NIGFEVLVG 854 (1513)
Q Consensus 846 ~~~~~~l~~ 854 (1513)
++.|+++++
T Consensus 564 ~g~y~~l~~ 572 (574)
T PRK11160 564 QGRYYQLKQ 572 (574)
T ss_pred CcHHHHHHh
Confidence 999998874
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-67 Score=672.01 Aligned_cols=547 Identities=22% Similarity=0.279 Sum_probs=431.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 304 IYKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQL 383 (1513)
Q Consensus 304 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 383 (1513)
.++.+++.+++.+.+..++.++..++..+.|++++.++|.+....+.. ....+++.++++.++..+......+...++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (576)
T TIGR02204 8 ALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSG--LLNRYFAFLLVVALVLALGTAARFYLVTWL 85 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667777888888899999999999999999999744222211 111222223333334444555556667789
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 000432 384 GLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFY-SNYMFMLPVQISLAIYIL-RTNLGLGSLAA 461 (1513)
Q Consensus 384 ~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~l~~L-~~~lg~~~l~~ 461 (1513)
+.++...++..+|+|.++++...+++.+.|++++++++|++.+.+++.. +..++...+.++++++++ +....++.++.
T Consensus 86 ~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 165 (576)
T TIGR02204 86 GERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVL 165 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999888899999999999999999987643 333333333333333322 23333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 462 LAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATS 541 (1513)
Q Consensus 462 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~ 541 (1513)
+.+++.+.+...+.+..++..++.++..++..+.+.|.++|+++||.+++|+.+.+++++..++..+...+........
T Consensus 166 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 166 -LAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233334456777788888888899999999999999999999999999988888776665444433333322222
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 000432 542 AFIF--WGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDA 619 (1513)
Q Consensus 542 ~~~~--~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~ 619 (1513)
.... ......+.++.+|++.+..+.+|+|.++++..++..+..|+..++..+..+.+++++++|+.++++.++..+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 2211 11123445566788888889999999999999999999999999999999999999999999999865432111
Q ss_pred ccc-cCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC---
Q 000432 620 VEY-VPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--- 695 (1513)
Q Consensus 620 ~~~-~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g--- 695 (1513)
... ....+....|+++|++|+|++++++++|+|+||+++|||+++|+|+||||||||+++|+|+++|.+|+|.++|
T Consensus 325 ~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i 404 (576)
T TIGR02204 325 AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDL 404 (576)
T ss_pred CCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEH
Confidence 111 1111123469999999999754336899999999999999999999999999999999999999999999998
Q ss_pred ----------eEEEEcCCCcccCccHHHHHccCCC-CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHH
Q 000432 696 ----------TKAYVPQSPWILTGNIRENILFGNQ-YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQR 764 (1513)
Q Consensus 696 ----------~~ayv~Q~~~l~~~ti~eNI~fg~~-~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqR 764 (1513)
.++||||+|++|++||+|||.+|.| .++++.+++++.+++.++++.+|+|++|.+||+|.+||||||||
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qr 484 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQR 484 (576)
T ss_pred HhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHH
Confidence 3699999999999999999999876 46678889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHh
Q 000432 765 IQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLK 844 (1513)
Q Consensus 765 i~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~ 844 (1513)
++||||+|++|+|+|||||||+||+++++.+++ .+....+++|+|+||||++.++.||+|++|++|++++.|+++++++
T Consensus 485 l~laRal~~~~~ililDEpts~lD~~~~~~i~~-~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 485 IAIARAILKDAPILLLDEATSALDAESEQLVQQ-ALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHHHHHHhCCCeEEEeCcccccCHHHHHHHHH-HHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 999999999999999999999999999877764 5666678999999999999999999999999999999999999999
Q ss_pred cCccHHHHHH
Q 000432 845 QNIGFEVLVG 854 (1513)
Q Consensus 845 ~~~~~~~l~~ 854 (1513)
+++.|+++++
T Consensus 564 ~~~~~~~l~~ 573 (576)
T TIGR02204 564 KGGLYARLAR 573 (576)
T ss_pred cCChHHHHHh
Confidence 9999988764
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=678.18 Aligned_cols=546 Identities=21% Similarity=0.276 Sum_probs=439.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 304 IYKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQL 383 (1513)
Q Consensus 304 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 383 (1513)
.++..++.+++.+....++.++..++.++.|++++.++|.+...... ...+.++++++++.++..++.....+...++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~--~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (694)
T TIGR01846 129 WFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGL--STLSVLALAMLAVAIFEPALGGLRTYLFAHL 206 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566777788888888999999999999999999987533221 2233344445555556666666667777889
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 384 GLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFY-SNYMFMLPVQISLAIYILRTNLGLGSLAAL 462 (1513)
Q Consensus 384 ~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~l~~L~~~lg~~~l~~l 462 (1513)
+.++...++..+|+|.++++..++++.++|++++++ +|++.+.+++.. ........+.+++.+++++..-++.+++.+
T Consensus 207 ~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 285 (694)
T TIGR01846 207 TSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVI 285 (694)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 699999987643 222222222222223333322222233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 463 AATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSA 542 (1513)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~~ 542 (1513)
+++++...+...+.+..++..++.++..+++.+.+.|.++|+++||.++.|+.+.+++++..++..+...+.........
T Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (694)
T TIGR01846 286 GSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAG 365 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555667777777888888889999999999999999999999999998888766655555444444433332
Q ss_pred HHHH--HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Q 000432 543 FIFW--GSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAV 620 (1513)
Q Consensus 543 ~~~~--~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~ 620 (1513)
.... .....+.++.+|++.+..+.+|.|.++++..+...+..|+..+...+..+.+++++++|+.++++.++..+..
T Consensus 366 ~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~- 444 (694)
T TIGR01846 366 QAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA- 444 (694)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-
Confidence 2221 1122344567888888899999999999999999999999999999999999999999999999876543221
Q ss_pred cccCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe----
Q 000432 621 EYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT---- 696 (1513)
Q Consensus 621 ~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~---- 696 (1513)
...+.......|+++|++|+|+++ ++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.
T Consensus 445 ~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~ 523 (694)
T TIGR01846 445 GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAI 523 (694)
T ss_pred CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhh
Confidence 111111234579999999999753 457999999999999999999999999999999999999999999999984
Q ss_pred ---------EEEEcCCCcccCccHHHHHccCCC-CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 000432 697 ---------KAYVPQSPWILTGNIRENILFGNQ-YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766 (1513)
Q Consensus 697 ---------~ayv~Q~~~l~~~ti~eNI~fg~~-~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~ 766 (1513)
++||||+|++|++||+|||.++++ .++++..++++.+++.++++.+|+|++|.+||+|.+||||||||++
T Consensus 524 ~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~ 603 (694)
T TIGR01846 524 ADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIA 603 (694)
T ss_pred CCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHH
Confidence 599999999999999999999875 5677888999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhcC
Q 000432 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846 (1513)
Q Consensus 767 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~~ 846 (1513)
||||++++|+|+|||||||+||+++++++.+ .+....+++|+|+||||++.++.||+|++|++|++++.|+|+|+++++
T Consensus 604 lARall~~~~ililDEpts~LD~~~~~~i~~-~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~ 682 (694)
T TIGR01846 604 IARALVGNPRILIFDEATSALDYESEALIMR-NMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ 682 (694)
T ss_pred HHHHHHhCCCEEEEECCCcCCCHHHHHHHHH-HHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcC
Confidence 9999999999999999999999999888865 566666889999999999999999999999999999999999999999
Q ss_pred ccHHHHHHh
Q 000432 847 IGFEVLVGA 855 (1513)
Q Consensus 847 ~~~~~l~~~ 855 (1513)
+.|+++++.
T Consensus 683 ~~y~~l~~~ 691 (694)
T TIGR01846 683 GLYARLWQQ 691 (694)
T ss_pred ChHHHHHHh
Confidence 999998753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-67 Score=662.57 Aligned_cols=505 Identities=19% Similarity=0.221 Sum_probs=389.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 307 AIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLR 386 (1513)
Q Consensus 307 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 386 (1513)
.+++.+++.++...++.++..++..+.|++++.++|.+..... . ...+.+.+++++..++..++.....+...+.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (529)
T TIGR02868 6 PLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-V-LYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALR 83 (529)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777788888899999999999999999997653321 1 1111111122223344445555555566788889
Q ss_pred HHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 387 LRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYS-NYMFMLPVQISLAIYILRTNLGLGSLAALAAT 465 (1513)
Q Consensus 387 ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~-~~~~~~pl~i~~~l~~L~~~lg~~~l~~l~~~ 465 (1513)
+...++..+|+|.++++..+++++++|+++|++++|++++.+++... ..+....+.+++++++++..-+..+++.++.+
T Consensus 84 ~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~ 163 (529)
T TIGR02868 84 SLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGL 163 (529)
T ss_pred HHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999877543 23333333333333332221111222222222
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 466 LTVMTCN-IPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFI 544 (1513)
Q Consensus 466 ~~~~~~~-~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~~~~ 544 (1513)
++++++. ....+..++..++..+..++..+.+.|.++|+++||.|++|+.+.+++++..++..+...+.....+....+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (529)
T TIGR02868 164 LLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAA 243 (529)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 233344455566677788899999999999999999999999999999887766555555544444433332
Q ss_pred HHHH--HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Q 000432 545 FWGS--PTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEY 622 (1513)
Q Consensus 545 ~~~~--p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~ 622 (1513)
.... ...+.++.+|++.+.++.+|.|.+.+++.+...+..|+..++..+..+.++++|.+|+.++++.++..++....
T Consensus 244 ~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~ 323 (529)
T TIGR02868 244 QLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVP 323 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCC
Confidence 2222 22344556778888889999999999999999999999999999999999999999999999876532211110
Q ss_pred --cCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC-----
Q 000432 623 --VPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG----- 695 (1513)
Q Consensus 623 --~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g----- 695 (1513)
.+.......|+++|++|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||
T Consensus 324 ~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~ 401 (529)
T TIGR02868 324 AAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSS 401 (529)
T ss_pred CCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhh
Confidence 0011123469999999999753 4799999999999999999999999999999999999999999999999
Q ss_pred -------eEEEEcCCCcccCccHHHHHccCCC-CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 000432 696 -------TKAYVPQSPWILTGNIRENILFGNQ-YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQI 767 (1513)
Q Consensus 696 -------~~ayv~Q~~~l~~~ti~eNI~fg~~-~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~l 767 (1513)
.++||||+|++|++||||||++|+| .++++++++++.|++.++++.+|+|++|.|||+|.+|||||||||+|
T Consensus 402 ~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiai 481 (529)
T TIGR02868 402 LQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLAL 481 (529)
T ss_pred HHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHH
Confidence 6899999999999999999999976 57889999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCC
Q 000432 768 ARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQV 816 (1513)
Q Consensus 768 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~ 816 (1513)
|||++++|+|+||||||||||+++++.|.+. +....+++|+|+||||+
T Consensus 482 ARall~~~~iliLDE~TSaLD~~te~~I~~~-l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 482 ARALLADAPILLLDEPTEHLDAGTESELLED-LLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999888754 56667899999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-66 Score=664.55 Aligned_cols=541 Identities=21% Similarity=0.260 Sum_probs=420.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 308 IFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRL 387 (1513)
Q Consensus 308 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 387 (1513)
+++.+++.+.+.+++.++..++.++.|++++.++|.+..+. . .. .+++.+++..++..+......+...++..++
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~--~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
T PRK13657 13 YLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG--D--IF-PLLAAWAGFGLFNIIAGVLVARHADRLAHRR 87 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--c--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777888889999999999999999999876432 1 11 1111122222222333333344566788888
Q ss_pred HHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 388 RAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFY-SNYMFMLPVQISLAIYILRTNLGLGSLAALAATL 466 (1513)
Q Consensus 388 r~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~l~~L~~~lg~~~l~~l~~~~ 466 (1513)
+..+...+|+|.++++...+.+.++|+++++++.|++.+.+.+.. +.......+..++.+++++..-.+.+++.+++++
T Consensus 88 ~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~ 167 (588)
T PRK13657 88 RLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGI 167 (588)
T ss_pred HHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999765432 2222222222222222222211112222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 000432 467 TVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFI-- 544 (1513)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~~~~-- 544 (1513)
+...+...+.+..++.+++.++..++..+...|.++|+++||.|+.|+.+.+++.+.-++..+...+..........+
T Consensus 168 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (588)
T PRK13657 168 VYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNR 247 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777888888888999999999999999999999999999888777665444333322222222211111
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Q 000432 545 FWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVP 624 (1513)
Q Consensus 545 ~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~ 624 (1513)
.......+.++.++++.+..+.+|+|.+++++.++..+..|+..+...+..+.+++.+.+|+.++++.++..+......+
T Consensus 248 ~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 327 (588)
T PRK13657 248 AASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAID 327 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCC
Confidence 11222345566788888889999999999999999999999999999999999999999999999976543221111111
Q ss_pred CCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC---------
Q 000432 625 KGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--------- 695 (1513)
Q Consensus 625 ~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g--------- 695 (1513)
.......|+++|++|+|++ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|.+|+|.++|
T Consensus 328 ~~~~~~~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~ 405 (588)
T PRK13657 328 LGRVKGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRA 405 (588)
T ss_pred cCCCCCeEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHH
Confidence 1122347999999999974 25799999999999999999999999999999999999999999999998
Q ss_pred ----eEEEEcCCCcccCccHHHHHccCCC-CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHH
Q 000432 696 ----TKAYVPQSPWILTGNIRENILFGNQ-YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARA 770 (1513)
Q Consensus 696 ----~~ayv~Q~~~l~~~ti~eNI~fg~~-~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARa 770 (1513)
.++||||+|++|++||||||++++| .++++.+++++.+++.+.++.+|+|++|.+||+|.+|||||||||+||||
T Consensus 406 ~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARa 485 (588)
T PRK13657 406 SLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARA 485 (588)
T ss_pred HHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999999975 56778889999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhcCccHH
Q 000432 771 VYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFE 850 (1513)
Q Consensus 771 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~ 850 (1513)
++++|+|+|||||||+||+++++.+++ .+....+++|+|+||||++.++.||+|++|++|++++.|+|+++++.++.|.
T Consensus 486 ll~~~~iliLDEpts~LD~~t~~~i~~-~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~ 564 (588)
T PRK13657 486 LLKDPPILILDEATSALDVETEAKVKA-ALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFA 564 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHH
Confidence 999999999999999999999988875 4555667899999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 000432 851 VLVGAH 856 (1513)
Q Consensus 851 ~l~~~~ 856 (1513)
++++..
T Consensus 565 ~l~~~~ 570 (588)
T PRK13657 565 ALLRAQ 570 (588)
T ss_pred HHHHHh
Confidence 988643
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-66 Score=619.17 Aligned_cols=529 Identities=24% Similarity=0.311 Sum_probs=432.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 318 INASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYR 397 (1513)
Q Consensus 318 ~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~ 397 (1513)
+..++.++..++...+-+++...++.+-..+. . ...+.++++++++.+++.++....-...++.+.++|..|+..+++
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~-~-~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~ 81 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQL-F-QSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLD 81 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777887777776654432 1 334556667777788888888777778889999999999999999
Q ss_pred HHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 398 KGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIF-YS---NYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTCNI 473 (1513)
Q Consensus 398 K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~---~~~~~~pl~i~~~l~~L~~~lg~~~l~~l~~~~~~~~~~~ 473 (1513)
|..++++.+-+..++|++.++++.-++.+..++. |+ ......|+.+.++++.+.+.-++..+..+..+++. .+
T Consensus 82 ~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlf---Mi 158 (559)
T COG4988 82 KLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLF---MI 158 (559)
T ss_pred HHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HH
Confidence 9999999999999999999999999999988764 22 33445677777777666665555444444433333 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 474 PITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLE----SLRQVECIWLWKSLRLSATSAFIFWGSP 549 (1513)
Q Consensus 474 ~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~----~~R~~E~~~~~~~~~~~~~~~~~~~~~p 549 (1513)
.+++..++..++.++....-....-+.|+|+.++|.|+..+...++|. +.|+.-++.++-.....++.-++...+.
T Consensus 159 lvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsi 238 (559)
T COG4988 159 LVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSI 238 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777778888888888889999999999999998877776664 4566666666655444444444433332
Q ss_pred HHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc-cCCCC
Q 000432 550 TFISVVTFGACMLLG-IQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEY-VPKGR 627 (1513)
Q Consensus 550 ~~v~~~~f~~~~~~~-~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~-~~~~~ 627 (1513)
..+..+.+..+++ |+++....+.++.+---+..|++.+...++.-+++..+.+++..|++.|....+..+. .....
T Consensus 239 --AlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~ 316 (559)
T COG4988 239 --ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANE 316 (559)
T ss_pred --HHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccC
Confidence 2233344445566 6999999999999999999999999999999999999999999999988764443321 11222
Q ss_pred CcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC------------
Q 000432 628 SEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG------------ 695 (1513)
Q Consensus 628 ~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g------------ 695 (1513)
....++.+|++|.|+++ +++++|+||++++|+++||||+||||||||+++|+|+++|++|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~ 394 (559)
T COG4988 317 PPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWR 394 (559)
T ss_pred CCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHH
Confidence 34456667999999753 3899999999999999999999999999999999999999999999998
Q ss_pred -eEEEEcCCCcccCccHHHHHccCCC-CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhc
Q 000432 696 -TKAYVPQSPWILTGNIRENILFGNQ-YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQ 773 (1513)
Q Consensus 696 -~~ayv~Q~~~l~~~ti~eNI~fg~~-~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~ 773 (1513)
+++||||+|.||+|||||||+|+++ .+++...++++..++.+.++. |+|.||+|||+|.+|||||+|||+||||+++
T Consensus 395 k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~ 473 (559)
T COG4988 395 KQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLS 473 (559)
T ss_pred hHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcC
Confidence 3699999999999999999999998 457889999999999999998 9999999999999999999999999999999
Q ss_pred CCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhcCccHHHHH
Q 000432 774 DADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLV 853 (1513)
Q Consensus 774 ~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~l~ 853 (1513)
++++||||||||+||+++++.| .+.+..+.++||+|+||||++.+..||+|+||++|+++++|+|+++.++++.|++++
T Consensus 474 ~~~l~llDEpTA~LD~etE~~i-~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~ 552 (559)
T COG4988 474 PASLLLLDEPTAHLDAETEQII-LQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLL 552 (559)
T ss_pred CCCEEEecCCccCCCHhHHHHH-HHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHH
Confidence 9999999999999999997766 467888889999999999999999999999999999999999999999999999998
Q ss_pred Hhhh
Q 000432 854 GAHS 857 (1513)
Q Consensus 854 ~~~~ 857 (1513)
..+.
T Consensus 553 ~~q~ 556 (559)
T COG4988 553 KQQE 556 (559)
T ss_pred HHHh
Confidence 7543
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-66 Score=662.30 Aligned_cols=529 Identities=23% Similarity=0.288 Sum_probs=417.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000432 323 AVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHL 402 (1513)
Q Consensus 323 ~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l 402 (1513)
.++..++..+.|++++.++|.+....... ...+.++++++++.++..++.....+...+.+.++...++..+|+|.+++
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 82 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMTT-GQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQ 82 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45556677889999999999775432111 12233344444444555555555555667788999999999999999999
Q ss_pred CcccccCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 403 SSQSRQSHTSGEIINYMSVDVQRISDFIFY-SNYMFMLPVQISLAIYILRTNLGL-GSLAALAATLTVMTCNIPITRIQK 480 (1513)
Q Consensus 403 ~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~l~~L~~~lg~-~~l~~l~~~~~~~~~~~~~~~~~~ 480 (1513)
+..++.++++|++++++++|++.+...... +..++..++..++++++++..++| .+++.++++++.+.+...+.+..+
T Consensus 83 ~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 162 (569)
T PRK10789 83 HPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLH 162 (569)
T ss_pred CHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999866532 344444444444443333223333 223333333444444555667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 000432 481 RFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFW--GSPTFISVVTFG 558 (1513)
Q Consensus 481 ~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~~~~~~--~~p~~v~~~~f~ 558 (1513)
+..++.++..++..+.+.|.++|+++||.+++|+.+.+++.+..++..+...+.....+....+.. .....+.++.+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 242 (569)
T PRK10789 163 ERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGG 242 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777778888889999999999999999999998888876554433333333333322222111 111234455678
Q ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCCcceEEEEeEE
Q 000432 559 ACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGK 638 (1513)
Q Consensus 559 ~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~~I~~~~~s 638 (1513)
++.+.++.+|+|.+++++.++..+..|+..+++.+..+.+++++.+|+.++++.++..+...... ......|+++|++
T Consensus 243 ~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~--~~~~~~I~~~~v~ 320 (569)
T PRK10789 243 SWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPV--PEGRGELDVNIRQ 320 (569)
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCC--CCCCCcEEEEEEE
Confidence 88888999999999999999999999999999999999999999999999998754322111111 1223469999999
Q ss_pred EEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------EEEEcCCCc
Q 000432 639 FSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------KAYVPQSPW 705 (1513)
Q Consensus 639 f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------~ayv~Q~~~ 705 (1513)
|+|+.+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++||||+|+
T Consensus 321 ~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 399 (569)
T PRK10789 321 FTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF 399 (569)
T ss_pred EECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCe
Confidence 999753 458999999999999999999999999999999999999999999999984 599999999
Q ss_pred ccCccHHHHHccCCC-CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEeeCcC
Q 000432 706 ILTGNIRENILFGNQ-YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPF 784 (1513)
Q Consensus 706 l~~~ti~eNI~fg~~-~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~illLDep~ 784 (1513)
+|++|++|||.+|.+ .++++++++++.+++.+++..+|+|++|.+||+|.+||||||||++||||++++|+|+||||||
T Consensus 400 lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt 479 (569)
T PRK10789 400 LFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479 (569)
T ss_pred eccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 999999999999964 5778889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhcCccHHHHHHhh
Q 000432 785 SAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGAH 856 (1513)
Q Consensus 785 salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 856 (1513)
|+||+++++++.+ .++...+++|+|+||||++.++.||+|++|++|++++.|++++++++++.|.++++.+
T Consensus 480 s~LD~~~~~~i~~-~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 480 SAVDGRTEHQILH-NLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred ccCCHHHHHHHHH-HHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 9999999988875 4666668999999999999999999999999999999999999999999999988654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-68 Score=637.05 Aligned_cols=468 Identities=28% Similarity=0.410 Sum_probs=357.9
Q ss_pred eEEEEeEEEEeCCCCC-CCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCC----CcEEEECCe---------
Q 000432 631 EVEVVNGKFSWNPESS-SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKM----AGTVKISGT--------- 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~----~G~i~~~g~--------- 696 (1513)
-++++|.+.+|..... .++++||||++.+||.+||||+|||||||+.++|+|..++. +|+|.++|+
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5889999988875532 25999999999999999999999999999999999999987 899998873
Q ss_pred --------EEEEcCCCc-ccCc--cHHHHHc----cCCCCC-chHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChH
Q 000432 697 --------KAYVPQSPW-ILTG--NIRENIL----FGNQYD-SCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGG 760 (1513)
Q Consensus 697 --------~ayv~Q~~~-l~~~--ti~eNI~----fg~~~~-~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGG 760 (1513)
+||++|+|+ .+|. ||.+-|. ...+.+ ++..+++++.. +- -.+|+.... ..-...||||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL---~~-Vgl~~~~~~--~~yPheLSGG 158 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELL---EQ-VGLPDPERR--DRYPHQLSGG 158 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHH---HH-cCCCChhhh--ccCCcccCch
Confidence 599999984 3443 6655553 333222 22222222221 11 123333222 4457899999
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEec
Q 000432 761 QKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAG 837 (1513)
Q Consensus 761 QkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g 837 (1513)
||||+.||+|+..+|+++|+||||+|||+.+..+|.+ +++.+. .|.++|+|||++..+.+ ||+|+||++|+++|.|
T Consensus 159 ~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~-llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G 237 (539)
T COG1123 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILD-LLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETG 237 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHH-HHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEec
Confidence 9999999999999999999999999999999999975 566554 48899999999999876 9999999999999999
Q ss_pred ChHHHHhcCccHHHHHHhhhhhhhhhcccccCCCCCCCCCCCCccCcCccccccccccCCCccchhhhhhhhcCCCchhh
Q 000432 838 RFEELLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGGKLVQE 917 (1513)
Q Consensus 838 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 917 (1513)
+.++++++... .
T Consensus 238 ~~~~i~~~p~h--------p------------------------------------------------------------ 249 (539)
T COG1123 238 PTEEILSNPQH--------P------------------------------------------------------------ 249 (539)
T ss_pred CHHHHHhccCC--------c------------------------------------------------------------
Confidence 99998753210 0
Q ss_pred hHhhhcccchHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHH
Q 000432 918 EEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLC 997 (1513)
Q Consensus 918 e~~~~g~v~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~ 997 (1513)
|-+. ++. ..+.... ....
T Consensus 250 ---------------YT~~-----Ll~----------------------a~p~~~~-~~~~------------------- 267 (539)
T COG1123 250 ---------------YTRG-----LLA----------------------AVPRLGD-EKII------------------- 267 (539)
T ss_pred ---------------ccHH-----HHh----------------------hCCCccc-cccc-------------------
Confidence 0000 000 0000000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 998 VLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMS 1077 (1513)
Q Consensus 998 ~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~ 1077 (1513)
T Consensus 268 -------------------------------------------------------------------------------- 267 (539)
T COG1123 268 -------------------------------------------------------------------------------- 267 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhH
Q 000432 1078 QVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPW 1157 (1513)
Q Consensus 1078 ~~~~~l~lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~ 1157 (1513)
T Consensus 268 -------------------------------------------------------------------------------- 267 (539)
T COG1123 268 -------------------------------------------------------------------------------- 267 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000432 1158 FHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYS 1237 (1513)
Q Consensus 1158 ~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~ 1237 (1513)
T Consensus 268 -------------------------------------------------------------------------------- 267 (539)
T COG1123 268 -------------------------------------------------------------------------------- 267 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccCCCCCCCCCCCceEEEEEEEEEEcC---------CCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHH
Q 000432 1238 NLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAE---------HLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQA 1308 (1513)
Q Consensus 1238 ~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~---------~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~l 1308 (1513)
..+.+. +. +...-++++|++.+|.. +...+++||||++++||++||||.||||||||.++
T Consensus 268 ~~~~~~--------~~---~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~ 336 (539)
T COG1123 268 RLPRRG--------PL---RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARI 336 (539)
T ss_pred cccccc--------cc---ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHH
Confidence 000000 00 01225889999999974 12468999999999999999999999999999999
Q ss_pred HhccCCCCCcEEEEcCee--CCCCChHHhhhceEEEcCCCcc--c-cCcHhhccC-CCC---CC----CHHHHHHHHHHc
Q 000432 1309 IFRIVEPTMGSIIIDNVD--ITKIGLHDLRSRLGIIPQDPTL--F-DGTVRGNLD-PLV---QY----SDKQVWEALDKC 1375 (1513)
Q Consensus 1309 L~rl~ep~~G~I~IDGvd--I~~i~l~~LR~~isiVpQdp~L--F-~gTIR~NLd-p~~---~~----sdeei~~aL~~~ 1375 (1513)
|+|+++|++|+|.+||.| .+.-....+|+++-+|+|||+- - ..||+++|. |.. .. ..+.+-+.++++
T Consensus 337 i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~V 416 (539)
T COG1123 337 LAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELV 416 (539)
T ss_pred HhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHc
Confidence 999999999999999977 3433456688899999999973 2 469999984 332 11 223577889999
Q ss_pred CCcH-HHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEE
Q 000432 1376 QLGD-LVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVT 1452 (1513)
Q Consensus 1376 ~l~~-~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~ 1452 (1513)
+|.+ +..+.| ..||||||||+||||||..+|++||+|||||+||+-+.+.|.+.|++.-+ +.|.|+
T Consensus 417 gL~~~~l~ryP-----------~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lf 485 (539)
T COG1123 417 GLPPEFLDRYP-----------HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLF 485 (539)
T ss_pred CCCHHHHhcCc-----------hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 9985 444444 46899999999999999999999999999999999999999999876543 689999
Q ss_pred eccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcCChHHHHHHHH
Q 000432 1453 IAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKE 1497 (1513)
Q Consensus 1453 IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~~~ 1497 (1513)
|+|+++.++. ||||+||++|+|||.|+.++..+++...|.+..-+
T Consensus 486 ISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~ 531 (539)
T COG1123 486 ISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLA 531 (539)
T ss_pred EeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHHH
Confidence 9999999998 99999999999999999999999887777765543
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-65 Score=648.02 Aligned_cols=540 Identities=18% Similarity=0.246 Sum_probs=421.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 308 IFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRL 387 (1513)
Q Consensus 308 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 387 (1513)
+++.+|+.++...++.++..++..+.|++++.++|.+..+... ..+++.+++..++..+......+...++..++
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSDV-----LPTLALWAGFGVFNTIAYVLVAREADRLAHGR 87 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888899999999999999999999977543211 11111112223334444444555667888899
Q ss_pred HHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000432 388 RAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFY-SNYMFMLPVQISLAIYIL-RTNLGLGSLAALAAT 465 (1513)
Q Consensus 388 r~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~l~~L-~~~lg~~~l~~l~~~ 465 (1513)
+..++..+|+|.++++...++++++|++++++++|++.+.+++.. +.......+.++++++++ +..+.++ ++.++++
T Consensus 88 ~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-li~l~~~ 166 (585)
T TIGR01192 88 RATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLS-IVLMVLG 166 (585)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999999999999999999999999999876643 222333333333332222 2222222 2222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000432 466 LTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFI- 544 (1513)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~~~~- 544 (1513)
++...+...+.++.++..++..+..++..+.+.|.++|+++||.++.|+.+.+++++..++-.+...+..........+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (585)
T TIGR01192 167 ILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLN 246 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444556677777777888888889999999999999999999999888887765543333222222222222111
Q ss_pred -HHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Q 000432 545 -FWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYV 623 (1513)
Q Consensus 545 -~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~ 623 (1513)
.......+.++.+|++.+..+.++.|.+++++.++..+..|+..+...+..+.+++++.+|+.++++.++..++.....
T Consensus 247 ~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~ 326 (585)
T TIGR01192 247 RMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAP 326 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCC
Confidence 1111223455677888888999999999999999999999999999999999999999999999997654322111111
Q ss_pred CCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------
Q 000432 624 PKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------- 696 (1513)
Q Consensus 624 ~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------- 696 (1513)
+.......++++|++|+|+++ +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 327 ~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~ 404 (585)
T TIGR01192 327 ELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTR 404 (585)
T ss_pred CCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCH
Confidence 111123469999999999742 46899999999999999999999999999999999999999999999883
Q ss_pred ------EEEEcCCCcccCccHHHHHccCCC-CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHH
Q 000432 697 ------KAYVPQSPWILTGNIRENILFGNQ-YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIAR 769 (1513)
Q Consensus 697 ------~ayv~Q~~~l~~~ti~eNI~fg~~-~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lAR 769 (1513)
++||||+|++|++|++|||.++.+ .++++.+++++.+++.+.+..+|+|++|.+||+|.+|||||||||+|||
T Consensus 405 ~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lAR 484 (585)
T TIGR01192 405 ESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIAR 484 (585)
T ss_pred HHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHH
Confidence 599999999999999999999965 4566777888888899999999999999999999999999999999999
Q ss_pred HHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhcCccH
Q 000432 770 AVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGF 849 (1513)
Q Consensus 770 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~ 849 (1513)
|++++|+++|||||||+||+++++.+. +.+....+++|+|+||||++.++.||+|++|++|++++.|++++++++++.|
T Consensus 485 all~~p~ililDEpts~LD~~~~~~i~-~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y 563 (585)
T TIGR01192 485 AILKNAPILVLDEATSALDVETEARVK-NAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRF 563 (585)
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHH-HHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChH
Confidence 999999999999999999999988885 4566667799999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 000432 850 EVLVGAH 856 (1513)
Q Consensus 850 ~~l~~~~ 856 (1513)
.+++..+
T Consensus 564 ~~l~~~~ 570 (585)
T TIGR01192 564 YKLLRRS 570 (585)
T ss_pred HHHHHhC
Confidence 9888643
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-65 Score=647.51 Aligned_cols=521 Identities=20% Similarity=0.233 Sum_probs=412.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 311 FIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRLRAA 390 (1513)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 390 (1513)
.+++.++...++.++..++..+.|++++.++|.+...... ...+.++++++++.++..++.....+...+++.++...
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSV--PTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGA 80 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677788888999999999999999999976532221 22333444555556666677777777788899999999
Q ss_pred HHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 391 LISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFY--SNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTV 468 (1513)
Q Consensus 391 L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~--~~~~~~~pl~i~~~l~~L~~~lg~~~l~~l~~~~~~ 468 (1513)
++..+|+|.++++.. ..+...+.+++|++++.+++.. ...+...++.++..+++++....++. +.++.+++.
T Consensus 81 lr~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l-i~l~~~~l~ 154 (544)
T TIGR01842 81 LNQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGI-LALGGAVVL 154 (544)
T ss_pred HHHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHH
Confidence 999999999999873 2355678889999999987643 22333333333333222222222222 222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 000432 469 MTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFW-- 546 (1513)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~~~~~~-- 546 (1513)
+.+.....+..++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++..++..+...+.....+....+..
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566777777888999999999999999999999999999999999887766655554444443333222221
Q ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCC
Q 000432 547 GSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKG 626 (1513)
Q Consensus 547 ~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~ 626 (1513)
.....+.++++|++.+..+.+|+|.+++++.++..+..|+..++..+..+.+++++.+|+.++++.++..++... . .
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~--~ 311 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMP-L--P 311 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCC-C--C
Confidence 112234556788888889999999999999999999999999999999999999999999999976654322111 1 1
Q ss_pred CCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe----------
Q 000432 627 RSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT---------- 696 (1513)
Q Consensus 627 ~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~---------- 696 (1513)
.....|+++|++|+|+++ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 312 ~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 312 EPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred CCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHH
Confidence 223579999999999743 358999999999999999999999999999999999999999999999983
Q ss_pred ---EEEEcCCCcccCccHHHHHccCCC-CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000432 697 ---KAYVPQSPWILTGNIRENILFGNQ-YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVY 772 (1513)
Q Consensus 697 ---~ayv~Q~~~l~~~ti~eNI~fg~~-~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~ 772 (1513)
++||||+|++|++|++|||.++.+ .+++++.++++.+++.++++.+|+|++|.+||+|.+||||||||++||||++
T Consensus 391 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 391 GKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred hhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 699999999999999999997654 6778888999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHh
Q 000432 773 QDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLK 844 (1513)
Q Consensus 773 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~ 844 (1513)
++|+++|||||||+||+++++.+.+ .+.... +++|+|+||||++.+..||+|++|++|++++.|+++|+++
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~-~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALAN-AIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHH-HHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999888865 565553 6899999999999998999999999999999999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-66 Score=711.78 Aligned_cols=531 Identities=19% Similarity=0.212 Sum_probs=402.1
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 000432 949 AQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAP 1028 (1513)
Q Consensus 949 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p 1028 (1513)
+.++..+++...|+.++...+.....+.......++.++++..++..++.....+.....+.+....++..+++++++.|
T Consensus 309 ~~i~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~ 388 (1495)
T PLN03232 309 FKIGHDLSQFVGPVILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLT 388 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34566666777777776554432111111111111111111122222222222223357788888889999999999999
Q ss_pred cccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1029 MAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTAREL 1108 (1513)
Q Consensus 1029 ~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv~ip~~~l~~~~~~~y~~~~r~l 1108 (1513)
..+|++.++|+++||+++|++.++... ..+..+....+.++..++++...-....++.++++++++.+..++.+..++.
T Consensus 389 ~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~ 467 (1495)
T PLN03232 389 HEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKL 467 (1495)
T ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999875 4555555555555544444332111111112222222223344455555666
Q ss_pred HHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1109 ARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVT 1188 (1513)
Q Consensus 1109 ~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~ 1188 (1513)
++.....++...+.+.|.++|+++||+|++|+.|.+++.+..+...+..........+..........+ +.+..+....
T Consensus 468 ~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fg~~~ 546 (1495)
T PLN03232 468 TKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVV-VTLVSFGVFV 546 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 666667777889999999999999999999999999988877776665544443333332222111111 1111122222
Q ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCceEEEEEEE
Q 000432 1189 LPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQ 1268 (1513)
Q Consensus 1189 ~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs 1268 (1513)
+..|.+++|.+..++++...+..++..+...+..+.+..+|.+|+.++++.+++.+.. .++ ..+..+.|+|+|++
T Consensus 547 v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~----~~~-~~~~~~~I~~~~vs 621 (1495)
T PLN03232 547 LLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQ----NPP-LQPGAPAISIKNGY 621 (1495)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc----cCC-cCCCCCcEEEEeeE
Confidence 3477899999999999999999999999999999999999999999999866542211 111 11234579999999
Q ss_pred EEEcCC-CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEcCCCc
Q 000432 1269 IRYAEH-LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPT 1347 (1513)
Q Consensus 1269 f~Y~~~-~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~ 1347 (1513)
|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+. .+|++|+||||+|+
T Consensus 622 F~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~Iayv~Q~p~ 689 (1495)
T PLN03232 622 FSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGSVAYVPQVSW 689 (1495)
T ss_pred EEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCcEEEEcCccc
Confidence 999753 35799999999999999999999999999999999999999999773 46889999999999
Q ss_pred cccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 000432 1348 LFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATA 1427 (1513)
Q Consensus 1348 LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTS 1427 (1513)
||+|||||||.++.++++++++++++.|+++++++.+|+|+||.|||+|.|||||||||||||||++++|+|++||||||
T Consensus 690 Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptS 769 (1495)
T PLN03232 690 IFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLS 769 (1495)
T ss_pred cccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHH-HHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhcCChHHHHHHHHHh
Q 000432 1428 SVDSATDGVIQ-KIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYS 1499 (1513)
Q Consensus 1428 slD~~Te~~Iq-~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~~~~~ 1499 (1513)
+||++|++.|. +.++...+++|+|+||||++++..||+|++|++|+|+|.|+|+||+++ ++.|+++++++.
T Consensus 770 aLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~-~~~~~~l~~~~~ 841 (1495)
T PLN03232 770 ALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS-GSLFKKLMENAG 841 (1495)
T ss_pred ccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc-chhHHHHHHhcc
Confidence 99999999874 557777789999999999999999999999999999999999999986 789999987654
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=707.71 Aligned_cols=474 Identities=20% Similarity=0.246 Sum_probs=384.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000432 1005 VAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVF 1084 (1513)
Q Consensus 1005 ~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~ 1084 (1513)
....+.+....++..++++++++|..++++.++|+++|++++|++.++... ..+..+....+.++..++++...-.+..
T Consensus 365 ~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~-~~l~~l~~~pl~ii~~~~lL~~~lg~~~ 443 (1622)
T PLN03130 365 VMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQIC-QQLHTLWSAPFRIIIAMVLLYQQLGVAS 443 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888889999999999999999999999999999999999999987 3455566666666655554443222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHH
Q 000432 1085 VIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAM 1164 (1513)
Q Consensus 1085 lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~ 1164 (1513)
++.++++++++.++.++.+..+..++.....+....+.+.|.++|+++||+|++|+.|.++..+..+...+.........
T Consensus 444 l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~ 523 (1622)
T PLN03130 444 LIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLS 523 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333444444555555666666666777888999999999999999999999999998887777655443333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000432 1165 EWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAP 1244 (1513)
Q Consensus 1165 ~wl~~~l~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~ 1244 (1513)
.+.......... ++.+..+....+..|.+++|.+..++++...+..++..+...+..+....+|.+|+.++++.+++.+
T Consensus 524 ~~~~~~~~~~~~-~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~ 602 (1622)
T PLN03130 524 AFNSFILNSIPV-LVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVL 602 (1622)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 222222121111 1111122222334788999999999999999999999999999999999999999999997654321
Q ss_pred CcccCCCCCCCCCCCceEEEEEEEEEEcCC-CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-cEEEE
Q 000432 1245 LVTEECRPPSNWPDVGTISFHNLQIRYAEH-LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTM-GSIII 1322 (1513)
Q Consensus 1245 ~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~-~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~-G~I~I 1322 (1513)
.. . ++ .-+..+.|+|+|++|+|+++ .+++|+|+||+|++||++||||+||||||||+++|+|+++|++ |+|.
T Consensus 603 ~~--~--~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~- 676 (1622)
T PLN03130 603 LP--N--PP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV- 676 (1622)
T ss_pred cc--C--Cc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEE-
Confidence 10 1 11 01224579999999999753 3569999999999999999999999999999999999999999 9997
Q ss_pred cCeeCCCCChHHhhhceEEEcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChh
Q 000432 1323 DNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVG 1402 (1513)
Q Consensus 1323 DGvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgG 1402 (1513)
+|++|+||||+|+||+|||||||.++.+++++++++|++.|+|+++++.+|+|+||.|||+|.|||||
T Consensus 677 ------------l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGG 744 (1622)
T PLN03130 677 ------------IRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGG 744 (1622)
T ss_pred ------------EcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHH
Confidence 47799999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH-HHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChh
Q 000432 1403 QRQLFCLGRTLLKKSSILVLDEATASVDSATDGVI-QKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPT 1481 (1513)
Q Consensus 1403 QRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~I-q~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~ 1481 (1513)
|||||+||||++++|+|+|||||||+||+++++.| ++.++...+++|+|+||||++.+..||+|++|++|+|+|.|+|+
T Consensus 745 QKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~ 824 (1622)
T PLN03130 745 QKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYE 824 (1622)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999999877 56787777899999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHh
Q 000432 1482 KLLEREDSFFSQLIKEYS 1499 (1513)
Q Consensus 1482 eLl~~~~~~f~~l~~~~~ 1499 (1513)
||+++ ++.|+++++.+.
T Consensus 825 eL~~~-~~~~~~l~~~~~ 841 (1622)
T PLN03130 825 ELSNN-GPLFQKLMENAG 841 (1622)
T ss_pred HHHhc-chhHHHHHHhcc
Confidence 99986 788999987654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-67 Score=669.55 Aligned_cols=484 Identities=23% Similarity=0.338 Sum_probs=356.7
Q ss_pred eEEEEeEEEEeCCCC-CCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC--------------
Q 000432 631 EVEVVNGKFSWNPES-SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG-------------- 695 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g-------------- 695 (1513)
-++++|++++|.... ..++|+||||++++||+++|+|+||||||||+++|+|+++|.+|+|.++|
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 589999999996322 34799999999999999999999999999999999999999999998765
Q ss_pred -------------eEEEEcCCC--cccC-ccHHHHHccCCC----CCchH----HHHHHHHHhcHHHHhhccCCCCcccc
Q 000432 696 -------------TKAYVPQSP--WILT-GNIRENILFGNQ----YDSCK----YDRTVEACALVKDFELFASGDLTEIG 751 (1513)
Q Consensus 696 -------------~~ayv~Q~~--~l~~-~ti~eNI~fg~~----~~~~~----~~~v~~~~~l~~d~~~l~~Gd~T~Ig 751 (1513)
.++||+|+| .++. .||+|||.++.. .+... ..++++..++ ++. .....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL-------~~~-~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRI-------PEA-QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCC-------CCh-hhHHh
Confidence 379999998 4554 599999987532 22211 1122222222 110 12234
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEccCCCcccc-CCEEEEE
Q 000432 752 ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-K-DKSVLYVTHQVEFLPA-ADIILVM 828 (1513)
Q Consensus 752 e~g~~LSGGQkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~-~~TvilvtH~~~~l~~-~d~i~vl 828 (1513)
....+|||||||||+||||++.+|++|||||||++||+.+.+.+.+ .++.+. + |+|+|+|||+++.+.. ||+|++|
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~-ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ-LIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 5667899999999999999999999999999999999999887764 566553 3 7999999999998765 9999999
Q ss_pred eCCeEEEecChHHHHhcCc-cHH-HHHHhhhhhhhhhcccccCCCCCCCCCCCCccCcCccccccccccCCCccchhhhh
Q 000432 829 ENGRIAQAGRFEELLKQNI-GFE-VLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLE 906 (1513)
Q Consensus 829 ~~G~i~~~g~~~~l~~~~~-~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 (1513)
++|++++.|+++++..... .|. .+.. .
T Consensus 243 ~~G~i~~~g~~~~~~~~~~~~~~~~l~~---------------------------------------------------~ 271 (623)
T PRK10261 243 YQGEAVETGSVEQIFHAPQHPYTRALLA---------------------------------------------------A 271 (623)
T ss_pred eCCeecccCCHHHhhcCCCChhhhhhhh---------------------------------------------------c
Confidence 9999999999887753210 000 0000 0
Q ss_pred hhhcCCCchhhhHhhhcccchHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHH
Q 000432 907 ITEKGGKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLV 986 (1513)
Q Consensus 907 ~~~~~~~~~~~e~~~~g~v~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v 986 (1513)
.+ .. . + ..|. .. +.
T Consensus 272 --~~--~~-~-~--~~~~---------------------------------------------~~----~~--------- 285 (623)
T PRK10261 272 --VP--QL-G-A--MKGL---------------------------------------------DY----PR--------- 285 (623)
T ss_pred --cC--cc-c-c--cccc---------------------------------------------cC----Cc---------
Confidence 00 00 0 0 0000 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHH
Q 000432 987 YTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSI 1066 (1513)
Q Consensus 987 y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~ 1066 (1513)
+.|. . +
T Consensus 286 ---------------------------------------~~~~-----~-----------~------------------- 291 (623)
T PRK10261 286 ---------------------------------------RFPL-----I-----------S------------------- 291 (623)
T ss_pred ---------------------------------------cccc-----c-----------c-------------------
Confidence 0000 0 0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHH
Q 000432 1067 IQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNAN 1146 (1513)
Q Consensus 1067 ~~~~~~l~v~~~~~~~l~lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~ 1146 (1513)
T Consensus 292 -------------------------------------------------------------------------------- 291 (623)
T PRK10261 292 -------------------------------------------------------------------------------- 291 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1147 LSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENK 1226 (1513)
Q Consensus 1147 ~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~ 1226 (1513)
. .. ...
T Consensus 292 -----~-~~----------------------------------~~~---------------------------------- 297 (623)
T PRK10261 292 -----L-EH----------------------------------PAK---------------------------------- 297 (623)
T ss_pred -----c-cc----------------------------------ccc----------------------------------
Confidence 0 00 000
Q ss_pred HHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCceEEEEEEEEEEcCC---------CCcceeeeeEEeeCCcEEEEEcC
Q 000432 1227 MISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEH---------LPSVLKNISCTFPGRKKVGVVGR 1297 (1513)
Q Consensus 1227 ~~sveRi~e~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~---------~~~vLk~is~~I~~GekvgIVGr 1297 (1513)
..+.+.+ . . .+ +....++++||+++|+.. ...+|+||||+|++||++||||+
T Consensus 298 -----------~~~~~~~---~-~-~~---~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~ 358 (623)
T PRK10261 298 -----------QEPPIEQ---D-T-VV---DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGE 358 (623)
T ss_pred -----------cCccccc---c-c-cc---CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECC
Confidence 0000000 0 0 00 011259999999999621 13599999999999999999999
Q ss_pred CCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChH---HhhhceEEEcCCCc--ccc-CcHhhccCC-C---CCCC---
Q 000432 1298 TGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLH---DLRSRLGIIPQDPT--LFD-GTVRGNLDP-L---VQYS--- 1364 (1513)
Q Consensus 1298 TGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~---~LR~~isiVpQdp~--LF~-gTIR~NLdp-~---~~~s--- 1364 (1513)
||||||||+++|.|+.+|++|+|.+||.++...+.. .+|++|+||||+|. ++. -||++|+.. . +..+
T Consensus 359 nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~ 438 (623)
T PRK10261 359 SGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKA 438 (623)
T ss_pred CCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHH
Confidence 999999999999999999999999999999877643 46788999999983 665 599999852 1 1111
Q ss_pred -HHHHHHHHHHcCCc-HHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 000432 1365 -DKQVWEALDKCQLG-DLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIIS 1442 (1513)
Q Consensus 1365 -deei~~aL~~~~l~-~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~ 1442 (1513)
++++.++|+.+++. +...+. ...||||||||++|||||+.+|+||||||||++||..+.+.|.+.|+
T Consensus 439 ~~~~~~~~L~~~gL~~~~~~~~-----------~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~ 507 (623)
T PRK10261 439 AAARVAWLLERVGLLPEHAWRY-----------PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLL 507 (623)
T ss_pred HHHHHHHHHHHcCCCHHHhhCC-----------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 24567788888885 333222 24699999999999999999999999999999999999999999998
Q ss_pred HhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcCChHH-HHHHHHH
Q 000432 1443 QEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDSFF-SQLIKEY 1498 (1513)
Q Consensus 1443 ~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f-~~l~~~~ 1498 (1513)
+..+ +.|||+|+|+++.+.. ||||+||++|+|+|.|+++++..++...| +.++...
T Consensus 508 ~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~~~ 567 (623)
T PRK10261 508 DLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMAAV 567 (623)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHHHHHhhC
Confidence 7643 7899999999999977 99999999999999999999987655544 4465543
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-64 Score=640.35 Aligned_cols=507 Identities=22% Similarity=0.237 Sum_probs=397.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 313 RKKAAINASFAVINAATSYVGPYLINDFVNFLT-DKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRLRAAL 391 (1513)
Q Consensus 313 ~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L 391 (1513)
|+.+...+++.++..++..+.|++++.++|.+. ..... ...+.+++.+++..++..++.....+...+++.++...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPL--AELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQL 79 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677888889999999999999999999874 32211 222333444445555666666666777788999999999
Q ss_pred HHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 000432 392 ISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFY-SNYMFMLPVQISLAIYILR---TNLGLGSLAALAATLT 467 (1513)
Q Consensus 392 ~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~l~~L~---~~lg~~~l~~l~~~~~ 467 (1513)
+..+|+|.++++...++++++|+++|++++|++++.+++.. +..++...+.+++++++++ +.+++..++ .+++
T Consensus 80 r~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~---~~~l 156 (529)
T TIGR02857 80 RERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLL---TAPL 156 (529)
T ss_pred HHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHH
Confidence 99999999999999999999999999999999999987653 3444443333333333222 223332222 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 468 VMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWG 547 (1513)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~~~~~~~ 547 (1513)
...+.....++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++..++..+...+..........+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (529)
T TIGR02857 157 IPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLEL 236 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223445666777777888889999999999999999999999999998888765544333333322222222222111
Q ss_pred HH--HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Q 000432 548 SP--TFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPK 625 (1513)
Q Consensus 548 ~p--~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~ 625 (1513)
.. ..+.++.++++.+..+.+|.|.+++++.+...+..|+..+...+..+.+++++.+|+.++++.++.+.+... .+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~-~~- 314 (529)
T TIGR02857 237 FATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAP-VT- 314 (529)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcC-CC-
Confidence 11 112223455566668899999999999999999999999999999999999999999999975432221111 11
Q ss_pred CCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe---------
Q 000432 626 GRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT--------- 696 (1513)
Q Consensus 626 ~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~--------- 696 (1513)
......|+++|++|+|++. ++++|+|+||+|++|++++|+|++|||||||+++|+|+++|++|+|.++|.
T Consensus 315 ~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~ 393 (529)
T TIGR02857 315 AAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADS 393 (529)
T ss_pred CCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHH
Confidence 1123479999999999753 358999999999999999999999999999999999999999999999984
Q ss_pred ----EEEEcCCCcccCccHHHHHccCCC-CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000432 697 ----KAYVPQSPWILTGNIRENILFGNQ-YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAV 771 (1513)
Q Consensus 697 ----~ayv~Q~~~l~~~ti~eNI~fg~~-~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal 771 (1513)
++||||+|++|++||+|||.+|.+ .++++.+++++.+++.++++.+|+|++|.+||+|.+||||||||++||||+
T Consensus 394 lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal 473 (529)
T TIGR02857 394 WRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAF 473 (529)
T ss_pred HHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHH
Confidence 699999999999999999999875 567889999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEE
Q 000432 772 YQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVM 828 (1513)
Q Consensus 772 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl 828 (1513)
+++|+|+|||||||+||+++++.+++ .+....+++|+|+||||++.++.||+|++|
T Consensus 474 ~~~~~ililDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 474 LRDAPLLLLDEPTAHLDAETEALVTE-ALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHH-HHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999998875 566666899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-67 Score=592.06 Aligned_cols=533 Identities=21% Similarity=0.273 Sum_probs=404.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 319 NASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKM--VETIAQRQWIFGARQLGLRLRAALISHLY 396 (1513)
Q Consensus 319 ~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~ir~~L~~~iy 396 (1513)
..++.++.-++....|.+.+.+++.+..+..+..+..+.++++.++-.. ...+......|..-++..--..++-..+|
T Consensus 220 cl~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lf 299 (790)
T KOG0056|consen 220 CLFLLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELF 299 (790)
T ss_pred HHHHHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHH
Confidence 3444555566677789999999998874433331222333332222111 11223333333333444445566778899
Q ss_pred HHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000432 397 RKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYS-NYMFMLPVQISLAIYILRTNLG-LGSLAALAATLTVMTCNIP 474 (1513)
Q Consensus 397 ~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~-~~~~~~pl~i~~~l~~L~~~lg-~~~l~~l~~~~~~~~~~~~ 474 (1513)
+|...+|..++-.+.+||++..|....+.+. +..++ ..+.-..+.++++++..+.... |-.++.+..+.+...+.+.
T Consensus 300 rHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~ 378 (790)
T KOG0056|consen 300 RHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIK 378 (790)
T ss_pred HHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeee
Confidence 9999999999888999999999987777666 44333 2222333445555444333322 2233333444444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 475 ITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLES----LRQVECIWLWKSLRLSATSAFIFWGSPT 550 (1513)
Q Consensus 475 ~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~----~R~~E~~~~~~~~~~~~~~~~~~~~~p~ 550 (1513)
+.....++++++..+-.+--+.-.+.+-|.+++|.|+.|+...++..+ ..+.|.+.+.....++.....++. ..
T Consensus 379 iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~--lg 456 (790)
T KOG0056|consen 379 ITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIG--LG 456 (790)
T ss_pred eehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--hH
Confidence 666667777776555555555667899999999999999876655444 444444443333333322222211 12
Q ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCCcc
Q 000432 551 FISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEF 630 (1513)
Q Consensus 551 ~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~ 630 (1513)
++....+.+|.+..+.+|.|...-+..|+.+|..|++.+...+..++...+-++|+.+.++++++..+.....|-....+
T Consensus 457 ll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G 536 (790)
T KOG0056|consen 457 LLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQG 536 (790)
T ss_pred HhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCC
Confidence 33334455666677889999999999999999999999999999999999999999999987665444333333334567
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------E
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------K 697 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------~ 697 (1513)
.|+|+|++|+|++ .+|+|+||||+++||+.+|+|||+|+||||++++|.++++..+|+|.+||+ +
T Consensus 537 ~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 537 KIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred eEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhc
Confidence 8999999999986 479999999999999999999999999999999999999999999999994 5
Q ss_pred EEEcCCCcccCccHHHHHccCCCC-CchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000432 698 AYVPQSPWILTGNIRENILFGNQY-DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDAD 776 (1513)
Q Consensus 698 ayv~Q~~~l~~~ti~eNI~fg~~~-~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~ 776 (1513)
|.|||+..+||+||..||.+|+|- ..|+..++.+|+..++-+-.+|+|+.|.|||||..||||+|||||+||+++++|.
T Consensus 615 GVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 615 GVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPS 694 (790)
T ss_pred CcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCc
Confidence 999999999999999999999985 3456667788999999999999999999999999999999999999999999999
Q ss_pred EEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhc-CccHHHHHHh
Q 000432 777 IYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ-NIGFEVLVGA 855 (1513)
Q Consensus 777 illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~l~~~ 855 (1513)
|++|||+|||||.+|++.| +.++.++.+++|.|+|+||++++-+||.|+|++||+|+|.|+|+||+++ +|.|+++++.
T Consensus 695 iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~ 773 (790)
T KOG0056|consen 695 IILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQA 773 (790)
T ss_pred EEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHH
Confidence 9999999999999999888 7889988999999999999999999999999999999999999999987 8899999976
Q ss_pred hh
Q 000432 856 HS 857 (1513)
Q Consensus 856 ~~ 857 (1513)
++
T Consensus 774 qq 775 (790)
T KOG0056|consen 774 QQ 775 (790)
T ss_pred HH
Confidence 54
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-65 Score=699.82 Aligned_cols=249 Identities=22% Similarity=0.288 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCCCCCCcccCCCCCCCCCCCc--eEEEEEEEEEEc--CCCCcceeeeeEEeeCCcEEE
Q 000432 1220 ICNAENKMISVERILQYS--NLPSEAPLVTEECRPPSNWPDVG--TISFHNLQIRYA--EHLPSVLKNISCTFPGRKKVG 1293 (1513)
Q Consensus 1220 ~~~le~~~~sveRi~e~~--~~~~e~~~~~~~~~~~~~wp~~g--~I~f~nvsf~Y~--~~~~~vLk~is~~I~~Gekvg 1293 (1513)
..+.|+.+.++||..++. +.+.|.+......+++. ..| .++++||+++|+ ++.+.+|+|||++|+|||++|
T Consensus 717 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~a 793 (1394)
T TIGR00956 717 GETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEK---ESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTA 793 (1394)
T ss_pred ccccccccccccccccCCCCccccccccccccccccc---cCCCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEE
Confidence 345667788999998763 34444332221111221 134 479999999995 334579999999999999999
Q ss_pred EEcCCCCCHHHHHHHHhccCC---CCCcEEEEcCeeCCCCChHHhhhceEEEcCCCc-cccCcHhhccCCC------CCC
Q 000432 1294 VVGRTGSGKSTLIQAIFRIVE---PTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPT-LFDGTVRGNLDPL------VQY 1363 (1513)
Q Consensus 1294 IVGrTGSGKSTLl~lL~rl~e---p~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~-LF~gTIR~NLdp~------~~~ 1363 (1513)
|+||||||||||+++|.|+.+ |++|+|.+||.++. .++|++++||||++. ++..||||||++. .+.
T Consensus 794 I~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~ 869 (1394)
T TIGR00956 794 LMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSV 869 (1394)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCC
Confidence 999999999999999999998 78999999999985 357899999999876 4567999999741 134
Q ss_pred CHH----HHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCC-EEEEecCCCCCCHHHHHHHH
Q 000432 1364 SDK----QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSS-ILVLDEATASVDSATDGVIQ 1438 (1513)
Q Consensus 1364 sde----ei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~-ILiLDEaTSslD~~Te~~Iq 1438 (1513)
+++ .+.++++..++.+ ..|+.+++.|.+||||||||++|||||+++|+ ||+||||||+||..+...|+
T Consensus 870 ~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~ 942 (1394)
T TIGR00956 870 SKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSIC 942 (1394)
T ss_pred CHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHH
Confidence 443 3567788777654 36899999899999999999999999999997 99999999999999999999
Q ss_pred HHHHHh-cCCcEEEEeccChhhH--hhcCEEEEEeCC-EEeEecChhH
Q 000432 1439 KIISQE-FKDRTVVTIAHRIHTV--IDSDLVLVLSDG-RIAEYDSPTK 1482 (1513)
Q Consensus 1439 ~~i~~~-~~~~TvI~IAHRl~ti--~~~DrIlVLd~G-~IvE~Gtp~e 1482 (1513)
+.|++. .+++|||+++|++++. ..||+|++|++| +++++|++.+
T Consensus 943 ~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 943 KLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 999987 4689999999999974 469999999997 9999999743
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-66 Score=655.82 Aligned_cols=448 Identities=23% Similarity=0.374 Sum_probs=343.7
Q ss_pred eEEEEeEEEEeCCC-CCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccC-----CCcEEEECC---------
Q 000432 631 EVEVVNGKFSWNPE-SSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQK-----MAGTVKISG--------- 695 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~-----~~G~i~~~g--------- 695 (1513)
-++++|++++|+.. ..+++|+|+||+|++||+++|+||||||||||+++|+|.++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 125799999999999999999999999999999999999986 799998876
Q ss_pred --------eEEEEcCCCc--ccC-ccHHHHHccCC----CCCch----HHHHHHHHHhcHHHHhhccCCCCccccCCCCC
Q 000432 696 --------TKAYVPQSPW--ILT-GNIRENILFGN----QYDSC----KYDRTVEACALVKDFELFASGDLTEIGERGIN 756 (1513)
Q Consensus 696 --------~~ayv~Q~~~--l~~-~ti~eNI~fg~----~~~~~----~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~ 756 (1513)
.++||+|+|. ++. .|+++|+.++. ..+.+ +.+++++.+++.+.. ........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCcc
Confidence 3699999985 443 58999987431 12221 222233333332100 012345678
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCcccc-CCEEEEEeCCeE
Q 000432 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPA-ADIILVMENGRI 833 (1513)
Q Consensus 757 LSGGQkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~~-~d~i~vl~~G~i 833 (1513)
|||||||||+||||++.+|+++|||||||+||+++.+.+.+ .+..+. .++|+|+|||+++.+.. ||+|++|++|++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQ-LLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRC 235 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH-HHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999887764 565543 37999999999998764 999999999999
Q ss_pred EEecChHHHHhcCccHHHHHHhhhhhhhhhcccccCCCCCCCCCCCCccCcCccccccccccCCCccchhhhhhhhcCCC
Q 000432 834 AQAGRFEELLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGGK 913 (1513)
Q Consensus 834 ~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 913 (1513)
++.|+.+++.... . . .
T Consensus 236 ~~~g~~~~~~~~~----------------------------------~----------------------~-~------- 251 (529)
T PRK15134 236 VEQNRAATLFSAP----------------------------------T----------------------H-P------- 251 (529)
T ss_pred EEeCCHHHHhhCC----------------------------------C----------------------C-H-------
Confidence 9988876543110 0 0 0
Q ss_pred chhhhHhhhcccchHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHH
Q 000432 914 LVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVG 993 (1513)
Q Consensus 914 ~~~~e~~~~g~v~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~ 993 (1513)
..+ .++. . .
T Consensus 252 ----~~~-----------~~~~----------------------------------~-----~----------------- 260 (529)
T PRK15134 252 ----YTQ-----------KLLN----------------------------------S-----E----------------- 260 (529)
T ss_pred ----HHH-----------HHHH----------------------------------h-----C-----------------
Confidence 000 0000 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000432 994 SSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTI 1073 (1513)
Q Consensus 994 ~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l 1073 (1513)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhh
Q 000432 1074 GVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNH 1153 (1513)
Q Consensus 1074 ~v~~~~~~~l~lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~ 1153 (1513)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1154 SRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERI 1233 (1513)
Q Consensus 1154 ~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi 1233 (1513)
..
T Consensus 261 ------------------------------------~~------------------------------------------ 262 (529)
T PRK15134 261 ------------------------------------PS------------------------------------------ 262 (529)
T ss_pred ------------------------------------cc------------------------------------------
Confidence 00
Q ss_pred HHhcCCCCCCCCcccCCCCCCCCCCCceEEEEEEEEEEcC---------CCCcceeeeeEEeeCCcEEEEEcCCCCCHHH
Q 000432 1234 LQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAE---------HLPSVLKNISCTFPGRKKVGVVGRTGSGKST 1304 (1513)
Q Consensus 1234 ~e~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~---------~~~~vLk~is~~I~~GekvgIVGrTGSGKST 1304 (1513)
.++..+ . ++ ....|+++|++++|+. +...+|+|+||+|++||++||+|+|||||||
T Consensus 263 -----~~~~~~---~---~~----~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKST 327 (529)
T PRK15134 263 -----GDPVPL---P---EP----ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKST 327 (529)
T ss_pred -----cccccc---C---CC----CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHH
Confidence 000000 0 00 0114899999999952 1245999999999999999999999999999
Q ss_pred HHHHHhccCCCCCcEEEEcCeeCCCCChHH---hhhceEEEcCCC--cccc-CcHhhccCCC---C--CCC----HHHHH
Q 000432 1305 LIQAIFRIVEPTMGSIIIDNVDITKIGLHD---LRSRLGIIPQDP--TLFD-GTVRGNLDPL---V--QYS----DKQVW 1369 (1513)
Q Consensus 1305 Ll~lL~rl~ep~~G~I~IDGvdI~~i~l~~---LR~~isiVpQdp--~LF~-gTIR~NLdp~---~--~~s----deei~ 1369 (1513)
|+++|.|++ |++|+|.+||.++..++.++ +|++++||||+| .+|. .|+++|+... . ..+ ++++.
T Consensus 328 Llk~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 406 (529)
T PRK15134 328 TGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVI 406 (529)
T ss_pred HHHHHhCcC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHH
Confidence 999999998 58999999999998776544 478899999998 3665 4999999631 1 111 24567
Q ss_pred HHHHHcCCcH-HHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--
Q 000432 1370 EALDKCQLGD-LVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK-- 1446 (1513)
Q Consensus 1370 ~aL~~~~l~~-~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~-- 1446 (1513)
++++..++.+ ... . ...+||||||||++||||++.+|+||||||||++||+.+.+.+.+.|++..+
T Consensus 407 ~~l~~~~l~~~~~~-------~----~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 475 (529)
T PRK15134 407 AVMEEVGLDPETRH-------R----YPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKH 475 (529)
T ss_pred HHHHHcCCCHHHHh-------c----CCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhh
Confidence 7788887752 222 2 2357999999999999999999999999999999999999999999987642
Q ss_pred CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcC
Q 000432 1447 DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE 1487 (1513)
Q Consensus 1447 ~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~ 1487 (1513)
++|||+|+|+++.+.. ||+|++|++|+|++.|+++++++++
T Consensus 476 ~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 517 (529)
T PRK15134 476 QLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAP 517 (529)
T ss_pred CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcCC
Confidence 7899999999999876 9999999999999999999998754
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-64 Score=638.86 Aligned_cols=526 Identities=16% Similarity=0.175 Sum_probs=389.9
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHhh-hhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 930 YWSYLTAVKGGALVPIILLAQSSFQVLQVAS-NYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAIT 1008 (1513)
Q Consensus 930 ~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~ 1008 (1513)
++.|++...+..+ +.+++.++..++.++. ++..++..|... .... .+..++++.++..++.+++.++....
T Consensus 4 ~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~i~~~lid~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (547)
T PRK10522 4 LRLVWRQYRWPFI--SVMALSLASAALGIGLIAFINQRLIETAD---TSLL---VLPEFLGLLLLLMAVTLGSQLALTTL 75 (547)
T ss_pred HHHHHHhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccc---ccch---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554443322 2233344445555543 344445555421 1111 11122233333345667888888999
Q ss_pred HHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000432 1009 GLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFI 1088 (1513)
Q Consensus 1009 ~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv~i 1088 (1513)
+.+...+++.++++++++.|++||++.++|++++|+++|++.+...+. .+..++..++.+++.++++++++|.++++++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l 154 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTA 154 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999999999999999999999999988665 5677888888899999999999999998777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchH---HHHHHHHHHHHHhhchhHHHHHHHHH
Q 000432 1089 PVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQE---DRFTNANLSLIDNHSRPWFHNVSAME 1165 (1513)
Q Consensus 1089 p~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e---~~f~~~~~~~~d~~~~~~~~~~~~~~ 1165 (1513)
..+++.+++..++.+..+...+......+...+++.|.++|+++++ ++.+ +++.+++.+..+...+.......
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 230 (547)
T PRK10522 155 IWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADT--- 230 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHH---
Confidence 6666655555555555555555556778889999999999999996 4443 35566666655554443332221
Q ss_pred HHHHHHHHHHHHHH-HHHH-HHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000432 1166 WLCFRLNLLSNFVF-AFSL-VVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEA 1243 (1513)
Q Consensus 1166 wl~~~l~~~~~~~~-~~~~-~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~ 1243 (1513)
+......+..++. .+.. .+......+..+.+.++.+..+...+..++..+...+.+++....+.+|+.++.+.|+|+
T Consensus 231 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~ 309 (547)
T PRK10522 231 -FHLSAVNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKA 309 (547)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 1111111111111 1111 111110011123344444444555566788888899999999999999999997655432
Q ss_pred CCcccCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEc
Q 000432 1244 PLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIID 1323 (1513)
Q Consensus 1244 ~~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~ID 1323 (1513)
+. ++..+. |..+.|+++||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+|
T Consensus 310 ~~--~~~~~~---~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~ 383 (547)
T PRK10522 310 EF--PRPQAF---PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLD 383 (547)
T ss_pred cc--cccccc---CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 21 111111 223689999999999744 469999999999999999999999999999999999999999999999
Q ss_pred CeeCCCCChHHhhhceEEEcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhH
Q 000432 1324 NVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQ 1403 (1513)
Q Consensus 1324 GvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQ 1403 (1513)
|+|+++++.+++|+++++|||||++|+||+++| ..+.+|++++++++++++.+.+.. ++|. .+|.+|||||
T Consensus 384 g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq 454 (547)
T PRK10522 384 GKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQ 454 (547)
T ss_pred CEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHH
Confidence 999999999999999999999999999999999 236788999999999999877653 4442 2589999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhcCEEEEEeCCEEeEe-cCh
Q 000432 1404 RQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEY-DSP 1480 (1513)
Q Consensus 1404 RQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~-Gtp 1480 (1513)
|||++||||++++|+|||||||||+||++|++.|.+.+.+.. +++|+|+||||++++..||+|++|++|+++|. |++
T Consensus 455 ~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~ 534 (547)
T PRK10522 455 KKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEE 534 (547)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCc
Confidence 999999999999999999999999999999999999987655 48999999999999999999999999999998 555
Q ss_pred hHHH
Q 000432 1481 TKLL 1484 (1513)
Q Consensus 1481 ~eLl 1484 (1513)
.+-.
T Consensus 535 ~~~~ 538 (547)
T PRK10522 535 RDAA 538 (547)
T ss_pred hhhh
Confidence 4433
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-64 Score=692.47 Aligned_cols=549 Identities=17% Similarity=0.179 Sum_probs=404.1
Q ss_pred chhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 302 PSIYKAIFFFIRKKA-AINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGA 380 (1513)
Q Consensus 302 ~~l~~~l~~~~~~~~-~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~ 380 (1513)
.+.++.+++..++.. ++.+++.++..++....|+.++...+......... ...+.+ ..+++..++..++.....+..
T Consensus 952 ~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~-~~~~~~-~iy~~l~i~~~~~~~~~~~~~ 1029 (1522)
T TIGR00957 952 LSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQN-NTSLRL-SVYGALGILQGFAVFGYSMAV 1029 (1522)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC-CcchHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 456667776653322 23333444455566677777777665321111111 011111 112222222222222223344
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 381 RQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFY-SNYMFMLPVQISLAIYILRTNLGLGSL 459 (1513)
Q Consensus 381 ~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~l~~L~~~lg~~~l 459 (1513)
...+.+.-..+...+|++.++.+..+++++++|+|+|++++|++.+.+.+.. +..+...++.++.++++++....+.++
T Consensus 1030 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~ 1109 (1522)
T TIGR00957 1030 SIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAV 1109 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888889999999999999999999999999999999999988753 334444555555544444332223222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 460 AALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSA 539 (1513)
Q Consensus 460 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~ 539 (1513)
+.++++++...+..+..+..+..++...+.++...+.++|.++|+++||.|++|+.|.++..+..+...+..........
T Consensus 1110 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1189 (1522)
T TIGR00957 1110 IIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANR 1189 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222223333333444444444555667778899999999999999999999998887766554443322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 000432 540 TSAFIFWGSPTFISVVTFGACMLL-GIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRD 618 (1513)
Q Consensus 540 ~~~~~~~~~p~~v~~~~f~~~~~~-~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~ 618 (1513)
+.......... +.++..+.+.+. .+.+++|.+..++.+...+..|+..+...+..+.++.+|.+||.++++.+++.+.
T Consensus 1190 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~ 1268 (1522)
T TIGR00957 1190 WLAVRLECVGN-CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPW 1268 (1522)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 22111111111 112223333333 4779999999999999999999999999999999999999999999976543321
Q ss_pred c-cc-ccCC-CCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC
Q 000432 619 A-VE-YVPK-GRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG 695 (1513)
Q Consensus 619 ~-~~-~~~~-~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g 695 (1513)
. .. ..+. .+..+.|+|+|++|+|+++ .+++|+|+||+|++||++||||++|||||||+++|+|+++|++|+|.+||
T Consensus 1269 ~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG 1347 (1522)
T TIGR00957 1269 QIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDG 1347 (1522)
T ss_pred cccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECC
Confidence 1 11 1111 1234689999999999754 34799999999999999999999999999999999999999999999999
Q ss_pred e-------------EEEEcCCCcccCccHHHHHccCCCCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHH
Q 000432 696 T-------------KAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQK 762 (1513)
Q Consensus 696 ~-------------~ayv~Q~~~l~~~ti~eNI~fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQk 762 (1513)
. ++||||+|.+|+|||||||....++++++..++++.|++.+.++.+|+|++|+|||+|.|||||||
T Consensus 1348 ~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1427 (1522)
T TIGR00957 1348 LNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427 (1522)
T ss_pred EEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHH
Confidence 4 599999999999999999983336788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHH
Q 000432 763 QRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEEL 842 (1513)
Q Consensus 763 qRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l 842 (1513)
||++||||++++|+|+|||||||+||++|++.| ++.++...+++|+|+||||++++..||+|+||++|+|+|.|+|+||
T Consensus 1428 Qrl~LARALLr~~~ILiLDEaTSalD~~Te~~I-q~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eL 1506 (1522)
T TIGR00957 1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLI-QSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNL 1506 (1522)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999997666 6678888899999999999999999999999999999999999999
Q ss_pred HhcCccHHHHHHh
Q 000432 843 LKQNIGFEVLVGA 855 (1513)
Q Consensus 843 ~~~~~~~~~l~~~ 855 (1513)
+++++.|++++++
T Consensus 1507 l~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1507 LQQRGIFYSMAKD 1519 (1522)
T ss_pred HhCCCHHHHHHHH
Confidence 9999999998864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-64 Score=589.01 Aligned_cols=527 Identities=23% Similarity=0.287 Sum_probs=417.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000432 323 AVINAATSYVGPYLINDFVNFLTDKKSRS--LESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGL 400 (1513)
Q Consensus 323 ~l~~~~~~~~~P~ll~~li~~~~~~~~~~--~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L 400 (1513)
.+..-.+....|++++..+|.+...+..+ .......+.+++++.+..+++.....+....+..++-......+|++.+
T Consensus 39 l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~ 118 (591)
T KOG0057|consen 39 LLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLM 118 (591)
T ss_pred HHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33335566778999999999886322111 1122344556667777777777777777788899999999999999999
Q ss_pred cCCcccccCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 000432 401 HLSSQSRQSHTSGEIINYMSVDVQRISDFIFY-SNYMFMLPVQISLAIYILRTNLGLGSLAA-LAATLTVMTCNIPITRI 478 (1513)
Q Consensus 401 ~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~l~~L~~~lg~~~l~~-l~~~~~~~~~~~~~~~~ 478 (1513)
.++.+++.+..+|++.+.|..-...|..++.- +..+....+.+.+....++...|.+..+. +..+.....+...+..+
T Consensus 119 ~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~ 198 (591)
T KOG0057|consen 119 SLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRW 198 (591)
T ss_pred hhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhH
Confidence 99999999999999999999988888887753 33444555667777778888999865433 33444444456667888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 000432 479 QKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLES-LRQVECIWLWKSLRLSATSAFIF-WGSPTFISVVT 556 (1513)
Q Consensus 479 ~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~-~R~~E~~~~~~~~~~~~~~~~~~-~~~p~~v~~~~ 556 (1513)
..++++++.++.++-.+..-+.|.|-.+||.|+-|+...++... +++.|...++....+...+..-- ..+..+..++.
T Consensus 199 Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~ 278 (591)
T KOG0057|consen 199 RNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMV 278 (591)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999998888754 34444443333322222221110 01111222222
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCCcceEEEEe
Q 000432 557 FGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVN 636 (1513)
Q Consensus 557 f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~~I~~~~ 636 (1513)
.+..-+..+.+|.+......+++.+|..|+..|...+..+.|+..-+.-....++.++...+. ..|....+..|+|+|
T Consensus 279 l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~--~~~i~~~~~~I~F~d 356 (591)
T KOG0057|consen 279 LGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--ALPIELFGGSIEFDD 356 (591)
T ss_pred HHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc--cCCcccCCCcEEEEe
Confidence 333334567899999999999999999999999999999999988877666554433322111 122223456799999
Q ss_pred EEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------EEEEcCC
Q 000432 637 GKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------KAYVPQS 703 (1513)
Q Consensus 637 ~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------~ayv~Q~ 703 (1513)
++|+|.+ ++++|+++||+|++||++||||+|||||||++++|+++++ ++|+|.+||. +|||||+
T Consensus 357 V~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd 433 (591)
T KOG0057|consen 357 VHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQD 433 (591)
T ss_pred eEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCc
Confidence 9999985 3579999999999999999999999999999999999999 9999999994 5999999
Q ss_pred CcccCccHHHHHccCCCCC-chHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEeeC
Q 000432 704 PWILTGNIRENILFGNQYD-SCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDD 782 (1513)
Q Consensus 704 ~~l~~~ti~eNI~fg~~~~-~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~illLDe 782 (1513)
..|||+||.+||.+|++.. .++..++++..++++-+..||+|++|.+||+|..|||||||||+||||+++||+|+++||
T Consensus 434 ~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DE 513 (591)
T KOG0057|consen 434 SVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDE 513 (591)
T ss_pred ccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecC
Confidence 9999999999999999853 344455566667888899999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhcCccHHHHHHh
Q 000432 783 PFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGA 855 (1513)
Q Consensus 783 p~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~l~~~ 855 (1513)
|||+||.+|++.+++. +++.+.+||+|+|.||+++++.||+|++++||++.+.|+|+|+++..+.|.+++..
T Consensus 514 aTS~LD~~TE~~i~~~-i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~ 585 (591)
T KOG0057|consen 514 ATSALDSETEREILDM-IMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTT 585 (591)
T ss_pred cccccchhhHHHHHHH-HHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcc
Confidence 9999999999999864 66688999999999999999999999999999999999999999988888888753
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=645.65 Aligned_cols=443 Identities=22% Similarity=0.334 Sum_probs=338.3
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccC--CCcEEEECCe------------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQK--MAGTVKISGT------------ 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~--~~G~i~~~g~------------ 696 (1513)
-++++|++++|+. +++|+|+||+|++|++++|+||||||||||+++|+|.++| ++|+|.++|.
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999952 4799999999999999999999999999999999999986 8999999872
Q ss_pred --EEEEcCCCcccC-ccHHHHHccCCCC------CchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 000432 697 --KAYVPQSPWILT-GNIRENILFGNQY------DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQI 767 (1513)
Q Consensus 697 --~ayv~Q~~~l~~-~ti~eNI~fg~~~------~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~l 767 (1513)
++||+|++.++. .|++||+.++... +.+...+.++ +-++.+ |..........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQ-----KLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHH-----HHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 699999998876 4999999987532 1111111111 112222 11112334556899999999999
Q ss_pred HHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000432 768 ARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI-LKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 768 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
|||+..+|+++|||||||+||+.....+.+ .+..+ .+++|+|+|||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~- 232 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLD-IIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTE- 232 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCH-
Confidence 999999999999999999999999877764 55554 357899999999998865 99999999999987665322100
Q ss_pred CccHHHHHHhhhhhhhhhcccccCCCCCCCCCCCCccCcCccccccccccCCCccchhhhhhhhcCCCchhhhHhhhccc
Q 000432 846 NIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGGKLVQEEEREKGSI 925 (1513)
Q Consensus 846 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v 925 (1513)
. +
T Consensus 233 ------------------------------------------------------------~-----------~------- 234 (506)
T PRK13549 233 ------------------------------------------------------------D-----------D------- 234 (506)
T ss_pred ------------------------------------------------------------H-----------H-------
Confidence 0 0
Q ss_pred chHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 926 GKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLV 1005 (1513)
Q Consensus 926 ~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~ 1005 (1513)
......+ . +
T Consensus 235 -------~~~~~~~------------------------------~-----~----------------------------- 243 (506)
T PRK13549 235 -------IITMMVG------------------------------R-----E----------------------------- 243 (506)
T ss_pred -------HHHHhhC------------------------------c-----C-----------------------------
Confidence 0000000 0 0
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000432 1006 AITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFV 1085 (1513)
Q Consensus 1006 ~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~l 1085 (1513)
T Consensus 244 -------------------------------------------------------------------------------- 243 (506)
T PRK13549 244 -------------------------------------------------------------------------------- 243 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 000432 1086 IFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAME 1165 (1513)
Q Consensus 1086 v~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1165 (1513)
T Consensus 244 -------------------------------------------------------------------------------- 243 (506)
T PRK13549 244 -------------------------------------------------------------------------------- 243 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 000432 1166 WLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPL 1245 (1513)
Q Consensus 1166 wl~~~l~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~ 1245 (1513)
.. + . .|.+.+
T Consensus 244 ----------------------------~~------------------------------------~---~--~~~~~~- 253 (506)
T PRK13549 244 ----------------------------LT------------------------------------A---L--YPREPH- 253 (506)
T ss_pred ----------------------------cc------------------------------------c---c--cccccc-
Confidence 00 0 0 000000
Q ss_pred cccCCCCCCCCCCCceEEEEEEEEEEcC-CCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC-CCCcEEEEc
Q 000432 1246 VTEECRPPSNWPDVGTISFHNLQIRYAE-HLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-PTMGSIIID 1323 (1513)
Q Consensus 1246 ~~~~~~~~~~wp~~g~I~f~nvsf~Y~~-~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e-p~~G~I~ID 1323 (1513)
+ +....|+++|++++|+. +..++|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+|
T Consensus 254 ------~----~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~ 323 (506)
T PRK13549 254 ------T----IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFID 323 (506)
T ss_pred ------C----CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEEC
Confidence 0 01125899999999953 12359999999999999999999999999999999999999 599999999
Q ss_pred CeeCCCCCh-HHhhhceEEEcCCC---cccc-CcHhhccCCC--CC------CC----HHHHHHHHHHcCCcHHHHhhhc
Q 000432 1324 NVDITKIGL-HDLRSRLGIIPQDP---TLFD-GTVRGNLDPL--VQ------YS----DKQVWEALDKCQLGDLVRAKEE 1386 (1513)
Q Consensus 1324 GvdI~~i~l-~~LR~~isiVpQdp---~LF~-gTIR~NLdp~--~~------~s----deei~~aL~~~~l~~~I~~lp~ 1386 (1513)
|.|+...+. +..|.+++|+||+| .+|. -|+.+|+... .. .+ .+++.++++.+++.+ +
T Consensus 324 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~ 397 (506)
T PRK13549 324 GKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT------A 397 (506)
T ss_pred CEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC------C
Confidence 999876543 34677899999997 3664 5999999631 11 11 134566677766531 1
Q ss_pred cccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cC
Q 000432 1387 KLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SD 1464 (1513)
Q Consensus 1387 gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~D 1464 (1513)
..|.. ...||||||||++||||++.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||
T Consensus 398 ~~~~~----~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d 473 (506)
T PRK13549 398 SPELA----IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSD 473 (506)
T ss_pred Ccccc----cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCC
Confidence 12333 35799999999999999999999999999999999999999999998753 47899999999999876 99
Q ss_pred EEEEEeCCEEeEecChhHHH
Q 000432 1465 LVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1465 rIlVLd~G~IvE~Gtp~eLl 1484 (1513)
+|++|++|+++..|+++++.
T Consensus 474 ~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 474 RVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred EEEEEECCEEEEEeccccCC
Confidence 99999999999999988764
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-65 Score=646.93 Aligned_cols=440 Identities=19% Similarity=0.327 Sum_probs=334.9
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC--------------e
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--------------T 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g--------------~ 696 (1513)
-++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 4799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEcCCCcccCc-cHHHHHccCCCC----------CchHH-HHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHH
Q 000432 697 KAYVPQSPWILTG-NIRENILFGNQY----------DSCKY-DRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQR 764 (1513)
Q Consensus 697 ~ayv~Q~~~l~~~-ti~eNI~fg~~~----------~~~~~-~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqR 764 (1513)
++||+|++.++.. |++||+.++... +.+.. +++.+ + ++.+ |..........+||||||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---l~~~--gl~~~~~~~~~~LSgG~~qr 153 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAM---M---LLRV--GLKVDLDEKVANLSISHKQM 153 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHH---H---HHHc--CCCCCcccchhhCCHHHHHH
Confidence 7999999987764 999999886420 11111 11111 1 1111 11112234456899999999
Q ss_pred HHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHH
Q 000432 765 IQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEEL 842 (1513)
Q Consensus 765 i~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l 842 (1513)
|+||||++.+|+++||||||++||+.+.+.+.+ .+..+. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 v~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 154 LEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFL-IMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 999999999999999999999999999887764 555443 47999999999999865 999999999999887765442
Q ss_pred HhcCccHHHHHHhhhhhhhhhcccccCCCCCCCCCCCCccCcCccccccccccCCCccchhhhhhhhcCCCchhhhHhhh
Q 000432 843 LKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGGKLVQEEEREK 922 (1513)
Q Consensus 843 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 922 (1513)
... +.
T Consensus 233 ~~~-----~~---------------------------------------------------------------------- 237 (510)
T PRK09700 233 SND-----DI---------------------------------------------------------------------- 237 (510)
T ss_pred CHH-----HH----------------------------------------------------------------------
Confidence 100 00
Q ss_pred cccchHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 000432 923 GSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRA 1002 (1513)
Q Consensus 923 g~v~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~ 1002 (1513)
.....+. .. .
T Consensus 238 -----------~~~~~~~-----------------------------~~----~-------------------------- 247 (510)
T PRK09700 238 -----------VRLMVGR-----------------------------EL----Q-------------------------- 247 (510)
T ss_pred -----------HHHhcCC-----------------------------Cc----c--------------------------
Confidence 0000000 00 0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000432 1003 MLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQ 1082 (1513)
Q Consensus 1003 ~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~ 1082 (1513)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHH
Q 000432 1083 VFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVS 1162 (1513)
Q Consensus 1083 l~lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~ 1162 (1513)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000432 1163 AMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSE 1242 (1513)
Q Consensus 1163 ~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e 1242 (1513)
. + +...++.
T Consensus 248 ----------------------------~----------------------------------------~---~~~~~~~ 256 (510)
T PRK09700 248 ----------------------------N----------------------------------------R---FNAMKEN 256 (510)
T ss_pred ----------------------------c----------------------------------------c---ccccccc
Confidence 0 0 0000000
Q ss_pred CCCcccCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEE
Q 000432 1243 APLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIII 1322 (1513)
Q Consensus 1243 ~~~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~I 1322 (1513)
.+ ++ +....|+++|++++|. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+
T Consensus 257 ~~-------~~---~~~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 322 (510)
T PRK09700 257 VS-------NL---AHETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL 322 (510)
T ss_pred cc-------cC---CCCcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEE
Confidence 00 00 0112599999999763 2899999999999999999999999999999999999999999999
Q ss_pred cCeeCCCCCh-HHhhhceEEEcCCC---ccccC-cHhhccCCCCC------------CC----HHHHHHHHHHcCCcHHH
Q 000432 1323 DNVDITKIGL-HDLRSRLGIIPQDP---TLFDG-TVRGNLDPLVQ------------YS----DKQVWEALDKCQLGDLV 1381 (1513)
Q Consensus 1323 DGvdI~~i~l-~~LR~~isiVpQdp---~LF~g-TIR~NLdp~~~------------~s----deei~~aL~~~~l~~~I 1381 (1513)
||.++...+. ..+|++++||||++ .+|.+ |+++|+..... .+ .+++.++++..++..
T Consensus 323 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-- 400 (510)
T PRK09700 323 NGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC-- 400 (510)
T ss_pred CCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC--
Confidence 9999876543 45778999999984 57765 99999864211 01 123556666666530
Q ss_pred HhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhH
Q 000432 1382 RAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTV 1460 (1513)
Q Consensus 1382 ~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti 1460 (1513)
+..+.++ ..||||||||++|||||+++|+||||||||++||..+.+.+.+.|++.. ++.|||+|+|+++.+
T Consensus 401 ----~~~~~~~----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~ 472 (510)
T PRK09700 401 ----HSVNQNI----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEI 472 (510)
T ss_pred ----CCccCcc----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 1233443 4699999999999999999999999999999999999999999998753 478999999999988
Q ss_pred hh-cCEEEEEeCCEEeEecChhH
Q 000432 1461 ID-SDLVLVLSDGRIAEYDSPTK 1482 (1513)
Q Consensus 1461 ~~-~DrIlVLd~G~IvE~Gtp~e 1482 (1513)
.. ||+|++|++|++++.+++.+
T Consensus 473 ~~~~d~i~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 473 ITVCDRIAVFCEGRLTQILTNRD 495 (510)
T ss_pred HhhCCEEEEEECCEEEEEecCcc
Confidence 65 99999999999999887633
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-65 Score=643.84 Aligned_cols=219 Identities=27% Similarity=0.445 Sum_probs=180.1
Q ss_pred eEEEEEEEEEEcC---CCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEc-Ce---eCCCCC--
Q 000432 1261 TISFHNLQIRYAE---HLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIID-NV---DITKIG-- 1331 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~---~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~ID-Gv---dI~~i~-- 1331 (1513)
.|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++ |. ++...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999953 22459999999999999999999999999999999999999999999996 64 344433
Q ss_pred -hHHhhhceEEEcCCCccccC-cHhhccCC-CC-CC----CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhH
Q 000432 1332 -LHDLRSRLGIIPQDPTLFDG-TVRGNLDP-LV-QY----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQ 1403 (1513)
Q Consensus 1332 -l~~LR~~isiVpQdp~LF~g-TIR~NLdp-~~-~~----sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQ 1403 (1513)
...+|++++|+||++.+|.. |+++|+.. .. .. .++++.++++..++.+.- .++-++.+ ...|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~----~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK--AEEILDKY----PDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc--chhhhhCC----hhhCCHHH
Confidence 23567889999999988875 99999953 11 11 124566778888875310 00012333 34699999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecCh
Q 000432 1404 RQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSP 1480 (1513)
Q Consensus 1404 RQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp 1480 (1513)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+ +.|||+|+|+++.+.. ||||++|++|++++.|++
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999987642 7899999999999876 999999999999999999
Q ss_pred hHHHh
Q 000432 1481 TKLLE 1485 (1513)
Q Consensus 1481 ~eLl~ 1485 (1513)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 88765
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-64 Score=634.31 Aligned_cols=201 Identities=17% Similarity=0.319 Sum_probs=174.4
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhce
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~i 1339 (1513)
..|+++|++++|++. ++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.++| ++++
T Consensus 318 ~~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 384 (530)
T PRK15064 318 NALEVENLTKGFDNG--PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANI 384 (530)
T ss_pred ceEEEEeeEEeeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEE
Confidence 369999999999643 599999999999999999999999999999999999999999999998 3579
Q ss_pred EEEcCCCc--ccc-CcHhhccCCCC--CCCHHHHHHHHHHcCCc-HHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1340 GIIPQDPT--LFD-GTVRGNLDPLV--QYSDKQVWEALDKCQLG-DLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1340 siVpQdp~--LF~-gTIR~NLdp~~--~~sdeei~~aL~~~~l~-~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
+|+||++. ++. .|+++|+.... ...++++.++|+..++. +.. +. ...+||||||||++||||+
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~~LSgGq~qrv~la~al 453 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDI-------KK----SVKVLSGGEKGRMLFGKLM 453 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHh-------cC----cccccCHHHHHHHHHHHHH
Confidence 99999984 443 59999986431 23456788889988874 322 22 3357999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEe-EecChhHHHhc
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIA-EYDSPTKLLER 1486 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~Iv-E~Gtp~eLl~~ 1486 (1513)
+++|+||||||||++||+.+...+.+.|++. +.|||+|+|+++.+.. ||+|++|++|+++ +.|+++++++.
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999999999999999999999875 4599999999999876 9999999999998 77999988765
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=636.15 Aligned_cols=446 Identities=21% Similarity=0.350 Sum_probs=339.9
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe--------------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------- 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------- 696 (1513)
.++++|++++|+. +++|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.++|.
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5999999999963 46999999999999999999999999999999999999999999999872
Q ss_pred EEEEcCCCcccCc-cHHHHHccCCCCCc---hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000432 697 KAYVPQSPWILTG-NIRENILFGNQYDS---CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVY 772 (1513)
Q Consensus 697 ~ayv~Q~~~l~~~-ti~eNI~fg~~~~~---~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~ 772 (1513)
++||+|++.++.. |++||+.|+..... ++.++.++..++. ........+|||||||||+||||++
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ-----------LDLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCC-----------ccccCChhhCCHHHHHHHHHHHHHH
Confidence 6899999988764 99999998753221 1222223333221 1223445689999999999999999
Q ss_pred cCCCEEEeeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHhcCccHH
Q 000432 773 QDADIYLLDDPFSAVDAHTGTQLFKDCLMGI-LKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQNIGFE 850 (1513)
Q Consensus 773 ~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~ 850 (1513)
.+|+++||||||++||+...+.+.+ .+..+ .+|+|+|+|||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~---- 231 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFS-RIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD---- 231 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHH----
Confidence 9999999999999999999887765 45544 347999999999998764 9999999999999988876643210
Q ss_pred HHHHhhhhhhhhhcccccCCCCCCCCCCCCccCcCccccccccccCCCccchhhhhhhhcCCCchhhhHhhhcccchHHH
Q 000432 851 VLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGGKLVQEEEREKGSIGKEVY 930 (1513)
Q Consensus 851 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~~ 930 (1513)
....
T Consensus 232 -~~~~--------------------------------------------------------------------------- 235 (510)
T PRK15439 232 -IIQA--------------------------------------------------------------------------- 235 (510)
T ss_pred -HHHH---------------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 931 WSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGL 1010 (1513)
Q Consensus 931 ~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~ 1010 (1513)
+...... ... ...
T Consensus 236 --~~~~~~~-----------------------------~~~----~~~-------------------------------- 248 (510)
T PRK15439 236 --ITPAARE-----------------------------KSL----SAS-------------------------------- 248 (510)
T ss_pred --HhCcccc-----------------------------ccc----ccc--------------------------------
Confidence 0000000 000 000
Q ss_pred HHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000432 1011 RTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPV 1090 (1513)
Q Consensus 1011 ~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv~ip~ 1090 (1513)
T Consensus 249 -------------------------------------------------------------------------------- 248 (510)
T PRK15439 249 -------------------------------------------------------------------------------- 248 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 000432 1091 TGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFR 1170 (1513)
Q Consensus 1091 ~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~ 1170 (1513)
T Consensus 249 -------------------------------------------------------------------------------- 248 (510)
T PRK15439 249 -------------------------------------------------------------------------------- 248 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccCC
Q 000432 1171 LNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEEC 1250 (1513)
Q Consensus 1171 l~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~~~~~ 1250 (1513)
++. .+ ..|...+ .
T Consensus 249 ------------------------------------------------------------~~~-~~-~~~~~~~----~- 261 (510)
T PRK15439 249 ------------------------------------------------------------QKL-WL-ELPGNRR----Q- 261 (510)
T ss_pred ------------------------------------------------------------ccc-cc-ccccccc----c-
Confidence 000 00 0000000 0
Q ss_pred CCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCC
Q 000432 1251 RPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKI 1330 (1513)
Q Consensus 1251 ~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i 1330 (1513)
.+ +..-.|+++|++. .+|+|+||+|++||++||+|++|||||||+++|.|+.+|++|+|.+||.++...
T Consensus 262 -~~---~~~~~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~ 330 (510)
T PRK15439 262 -QA---AGAPVLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINAL 330 (510)
T ss_pred -cC---CCCceEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCC
Confidence 00 0112589999983 169999999999999999999999999999999999999999999999999887
Q ss_pred ChHH-hhhceEEEcCCC---ccccC-cHhhccCCC-----C---CC--CHHHHHHHHHHcCCcHHHHhhhccccchhccC
Q 000432 1331 GLHD-LRSRLGIIPQDP---TLFDG-TVRGNLDPL-----V---QY--SDKQVWEALDKCQLGDLVRAKEEKLDSTVAEN 1395 (1513)
Q Consensus 1331 ~l~~-LR~~isiVpQdp---~LF~g-TIR~NLdp~-----~---~~--sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~ 1395 (1513)
+... .|++++|+||++ .+|.. |+++|+... . .. .++++.++++..++.. +..+.+
T Consensus 331 ~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~---- 400 (510)
T PRK15439 331 STAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF------NHAEQA---- 400 (510)
T ss_pred CHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC------CCccCc----
Confidence 7655 467899999996 36654 999998421 0 00 1123455666665530 123333
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCE
Q 000432 1396 GENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGR 1473 (1513)
Q Consensus 1396 G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~ 1473 (1513)
...||||||||++||||++.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++|+
T Consensus 401 ~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~ 480 (510)
T PRK15439 401 ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGE 480 (510)
T ss_pred cccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 35699999999999999999999999999999999999999999998764 47899999999999977 99999999999
Q ss_pred EeEecChhHHHhc
Q 000432 1474 IAEYDSPTKLLER 1486 (1513)
Q Consensus 1474 IvE~Gtp~eLl~~ 1486 (1513)
++..|+++++..+
T Consensus 481 i~~~~~~~~~~~~ 493 (510)
T PRK15439 481 ISGALTGAAINVD 493 (510)
T ss_pred EEEEEccccCCHH
Confidence 9999999887644
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-65 Score=638.26 Aligned_cols=436 Identities=19% Similarity=0.324 Sum_probs=333.5
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe--------------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------- 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------- 696 (1513)
-|+++|++++|+. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 47999999999999999999999999999999999999999999999872
Q ss_pred EEEEcCCCcccC-ccHHHHHccCCCC-------CchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHH
Q 000432 697 KAYVPQSPWILT-GNIRENILFGNQY-------DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIA 768 (1513)
Q Consensus 697 ~ayv~Q~~~l~~-~ti~eNI~fg~~~-------~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lA 768 (1513)
++||+|++.++. -|++||+.|+... +.+..++.++ +-++.+. ..........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~--l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEAD-----KLLARLN--LRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHH-----HHHHHcC--CCCCccCchhhCCHHHHHHHHHH
Confidence 699999987775 4999999987432 1111111111 1122221 11112334568999999999999
Q ss_pred HHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 000432 769 RAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI-LKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQN 846 (1513)
Q Consensus 769 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 846 (1513)
||+..+|+++||||||++||+.+.+.+.+ .+..+ .+++|+|+|||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~-- 230 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFR-VIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE-- 230 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH--
Confidence 99999999999999999999999887764 55544 347899999999998765 99999999999987654322100
Q ss_pred ccHHHHHHhhhhhhhhhcccccCCCCCCCCCCCCccCcCccccccccccCCCccchhhhhhhhcCCCchhhhHhhhcccc
Q 000432 847 IGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGGKLVQEEEREKGSIG 926 (1513)
Q Consensus 847 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~ 926 (1513)
+ +
T Consensus 231 -----------------------------------------------------------~-----------~-------- 232 (501)
T PRK10762 231 -----------------------------------------------------------D-----------S-------- 232 (501)
T ss_pred -----------------------------------------------------------H-----------H--------
Confidence 0 0
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 927 KEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVA 1006 (1513)
Q Consensus 927 ~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~ 1006 (1513)
......+ ..
T Consensus 233 ------~~~~~~~-----------------------------~~------------------------------------ 241 (501)
T PRK10762 233 ------LIEMMVG-----------------------------RK------------------------------------ 241 (501)
T ss_pred ------HHHHhcC-----------------------------CC------------------------------------
Confidence 0000000 00
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000432 1007 ITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVI 1086 (1513)
Q Consensus 1007 ~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv 1086 (1513)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 000432 1087 FIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEW 1166 (1513)
Q Consensus 1087 ~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1166 (1513)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Q 000432 1167 LCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLV 1246 (1513)
Q Consensus 1167 l~~~l~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~ 1246 (1513)
.. ..++..+
T Consensus 242 ------------------------------------------------------------------~~---~~~~~~~-- 250 (501)
T PRK10762 242 ------------------------------------------------------------------LE---DQYPRLD-- 250 (501)
T ss_pred ------------------------------------------------------------------cc---ccccccc--
Confidence 00 0000000
Q ss_pred ccCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCee
Q 000432 1247 TEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVD 1326 (1513)
Q Consensus 1247 ~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvd 1326 (1513)
.+ |..-.|+++|+++ .+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.+
T Consensus 251 -----~~---~~~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~ 315 (501)
T PRK10762 251 -----KA---PGEVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHE 315 (501)
T ss_pred -----cC---CCCcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 00 0112589999984 27999999999999999999999999999999999999999999999999
Q ss_pred CCCCChH-HhhhceEEEcCCC---cccc-CcHhhccCCCC-----C----CC----HHHHHHHHHHcCCcHHHHhhhccc
Q 000432 1327 ITKIGLH-DLRSRLGIIPQDP---TLFD-GTVRGNLDPLV-----Q----YS----DKQVWEALDKCQLGDLVRAKEEKL 1388 (1513)
Q Consensus 1327 I~~i~l~-~LR~~isiVpQdp---~LF~-gTIR~NLdp~~-----~----~s----deei~~aL~~~~l~~~I~~lp~gL 1388 (1513)
+...+.. .+|++++||||+| .+|. -|+++|+.... . .+ ++++.++++.+++.+ +..
T Consensus 316 i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~ 389 (501)
T PRK10762 316 VVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT------PSM 389 (501)
T ss_pred CCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC------CCc
Confidence 9876653 4678899999997 3554 69999996310 0 11 234566677666521 112
Q ss_pred cchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEE
Q 000432 1389 DSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLV 1466 (1513)
Q Consensus 1389 dt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrI 1466 (1513)
+.+ ...||||||||++||||++.+|+||+|||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|
T Consensus 390 ~~~----~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v 465 (501)
T PRK10762 390 EQA----IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRI 465 (501)
T ss_pred cCc----hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEE
Confidence 333 45699999999999999999999999999999999999999999998864 47899999999999876 9999
Q ss_pred EEEeCCEEeEecChhHHH
Q 000432 1467 LVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1467 lVLd~G~IvE~Gtp~eLl 1484 (1513)
++|++|++++.|+++++.
T Consensus 466 ~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 466 LVMHEGRISGEFTREQAT 483 (501)
T ss_pred EEEECCEEEEEeccccCC
Confidence 999999999999988753
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-62 Score=568.73 Aligned_cols=545 Identities=21% Similarity=0.263 Sum_probs=404.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 304 IYKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQL 383 (1513)
Q Consensus 304 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 383 (1513)
..+.+++ +|+.+++++++.++..++....-.+-+.+|....-.........++-+++.=...+..+...+.-...+...
T Consensus 7 ~i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~A 85 (573)
T COG4987 7 YLRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDA 85 (573)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4444455 677777777776666655544444445555432211110001112223333334455555555555566677
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 000432 384 GLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMFMLPVQISLAI--YILRTNLGLGSLAA 461 (1513)
Q Consensus 384 ~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~~~l--~~L~~~lg~~~l~~ 461 (1513)
..++-+.++-.+|+|....++.-.....+||+.|++..|++.+++.+......|...+.++.++ .+-+..++.+.+.+
T Consensus 86 tfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~ 165 (573)
T COG4987 86 TFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLG 165 (573)
T ss_pred HHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8899999999999999999998888899999999999999999999877666555444333322 22255666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 462 LAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATS 541 (1513)
Q Consensus 462 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~ 541 (1513)
+...+.++.+.....+.-++..++..+.+..--+.+.|.+.|+...+++|.++.+.+.+++.-+.-.+..+|........
T Consensus 166 ~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~ 245 (573)
T COG4987 166 LILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLS 245 (573)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555555666677777777777777777788899999999999999999999888764433333334444444444
Q ss_pred HHHHHHHHHH-HH-HHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccccc
Q 000432 542 AFIFWGSPTF-IS-VVTFGACMLLGIQLT-AGRVLSALATFRMLQDPIFN-LPDLLSNIAQGKVSADRIAAYLQEDEIQR 617 (1513)
Q Consensus 542 ~~~~~~~p~~-v~-~~~f~~~~~~~~~Lt-~~~~ft~l~l~~~L~~pl~~-lp~~i~~~~~a~vs~~RI~~fL~~~e~~~ 617 (1513)
.+...+...+ ++ .+...++..-.|..+ +..+...+..|..+ .++.- .|..+....++..|..|+.+.++++++..
T Consensus 246 ~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~-eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~ 324 (573)
T COG4987 246 DAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAAL-EAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVT 324 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHH-HHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccC
Confidence 3333222222 11 111122212224444 23332333323333 33332 33777889999999999999998776543
Q ss_pred ccccccCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC--
Q 000432 618 DAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG-- 695 (1513)
Q Consensus 618 ~~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g-- 695 (1513)
...+..+ ..+..++++|++|+|+++ +.++|+|+||++++||++||+|+||||||||+++|.|-++|++|+|..+|
T Consensus 325 ~~~~~~~--~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~ 401 (573)
T COG4987 325 FPDEQTA--TTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVE 401 (573)
T ss_pred CCccccC--CccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcC
Confidence 3211122 122379999999999864 56899999999999999999999999999999999999999999999998
Q ss_pred -----------eEEEEcCCCcccCccHHHHHccCCCC-CchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHH
Q 000432 696 -----------TKAYVPQSPWILTGNIRENILFGNQY-DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQ 763 (1513)
Q Consensus 696 -----------~~ayv~Q~~~l~~~ti~eNI~fg~~~-~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkq 763 (1513)
.+++++|.+.+|++|+|||+.+++|. ++|...++++..+|++-++..|+|++|.+||.|..|||||||
T Consensus 402 ~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~r 481 (573)
T COG4987 402 IASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481 (573)
T ss_pred hhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHH
Confidence 35889999999999999999999986 557788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHH
Q 000432 764 RIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELL 843 (1513)
Q Consensus 764 Ri~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~ 843 (1513)
|++|||++++|++++||||||.+||+.|++++++. +...++|||+|+||||+..++.||+|+||+||+++++|+|.+++
T Consensus 482 RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~l-l~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll 560 (573)
T COG4987 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLAL-LFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELL 560 (573)
T ss_pred HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHH-HHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhh
Confidence 99999999999999999999999999999999864 55567899999999999999999999999999999999999999
Q ss_pred hcCccHHHHHH
Q 000432 844 KQNIGFEVLVG 854 (1513)
Q Consensus 844 ~~~~~~~~l~~ 854 (1513)
++++.|.++.+
T Consensus 561 ~~~g~~~~l~q 571 (573)
T COG4987 561 ANNGRYKRLYQ 571 (573)
T ss_pred ccccHHHHHhc
Confidence 99999988753
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-64 Score=633.12 Aligned_cols=438 Identities=22% Similarity=0.329 Sum_probs=332.2
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC--------------e
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--------------T 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g--------------~ 696 (1513)
.++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4889999999963 4699999999999999999999999999999999999999999999876 2
Q ss_pred EEEEcCCCcccCc-cHHHHHccCCC------CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHH
Q 000432 697 KAYVPQSPWILTG-NIRENILFGNQ------YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIAR 769 (1513)
Q Consensus 697 ~ayv~Q~~~l~~~-ti~eNI~fg~~------~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lAR 769 (1513)
++||+|++.++.. |++||+.++.. .+....++.+ .+-++.+ |..........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEA-----REQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHH-----HHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 6999999988865 99999998642 1111111111 1112222 1111123455689999999999999
Q ss_pred HHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHhcCc
Q 000432 770 AVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI-LKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQNI 847 (1513)
Q Consensus 770 al~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~~~~ 847 (1513)
|++.+|+++||||||++||+++.+.+.+ .+..+ .+++|+|+|||+++.+.. ||+|++|++|+++..++..+
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~------ 226 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFR-VIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMA------ 226 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccc------
Confidence 9999999999999999999999888865 45444 347999999999998765 99999999999875332000
Q ss_pred cHHHHHHhhhhhhhhhcccccCCCCCCCCCCCCccCcCccccccccccCCCccchhhhhhhhcCCCchhhhHhhhcccch
Q 000432 848 GFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGGKLVQEEEREKGSIGK 927 (1513)
Q Consensus 848 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~ 927 (1513)
. . . .++
T Consensus 227 ---------------------------------~------------------~---~------------~~~-------- 232 (501)
T PRK11288 227 ---------------------------------Q------------------V---D------------RDQ-------- 232 (501)
T ss_pred ---------------------------------c------------------C---C------------HHH--------
Confidence 0 0 0 000
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 928 EVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAI 1007 (1513)
Q Consensus 928 ~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~ 1007 (1513)
+.... ... .
T Consensus 233 -----~~~~~------------------------------~~~-----~------------------------------- 241 (501)
T PRK11288 233 -----LVQAM------------------------------VGR-----E------------------------------- 241 (501)
T ss_pred -----HHHHh------------------------------cCC-----C-------------------------------
Confidence 00000 000 0
Q ss_pred HHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000432 1008 TGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIF 1087 (1513)
Q Consensus 1008 ~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv~ 1087 (1513)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK11288 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 000432 1088 IPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWL 1167 (1513)
Q Consensus 1088 ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1167 (1513)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK11288 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc
Q 000432 1168 CFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVT 1247 (1513)
Q Consensus 1168 ~~~l~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~~ 1247 (1513)
.. +. .+.+ +
T Consensus 242 --------------------------~~------------------------------------~~-----~~~~-~--- 250 (501)
T PRK11288 242 --------------------------IG------------------------------------DI-----YGYR-P--- 250 (501)
T ss_pred --------------------------cc------------------------------------cc-----cccc-c---
Confidence 00 00 0000 0
Q ss_pred cCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeC
Q 000432 1248 EECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDI 1327 (1513)
Q Consensus 1248 ~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI 1327 (1513)
. + +....++++|++++ .+++|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++
T Consensus 251 ~---~----~~~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~ 317 (501)
T PRK11288 251 R---P----LGEVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPI 317 (501)
T ss_pred c---C----CCCcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEEC
Confidence 0 0 01125889999842 389999999999999999999999999999999999999999999999998
Q ss_pred CCCCh-HHhhhceEEEcCCCc---cc-cCcHhhccCCCC--C-------CC----HHHHHHHHHHcCCcHHHHhhhcccc
Q 000432 1328 TKIGL-HDLRSRLGIIPQDPT---LF-DGTVRGNLDPLV--Q-------YS----DKQVWEALDKCQLGDLVRAKEEKLD 1389 (1513)
Q Consensus 1328 ~~i~l-~~LR~~isiVpQdp~---LF-~gTIR~NLdp~~--~-------~s----deei~~aL~~~~l~~~I~~lp~gLd 1389 (1513)
...+. +..|++++++||+|. +| ..|+.+|+.... . .. ++++.++++..++.+ +..+
T Consensus 318 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~ 391 (501)
T PRK11288 318 DIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT------PSRE 391 (501)
T ss_pred CCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc------CCcc
Confidence 75433 456789999999983 55 479999986421 0 01 134566666666521 1133
Q ss_pred chhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEE
Q 000432 1390 STVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVL 1467 (1513)
Q Consensus 1390 t~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIl 1467 (1513)
+++ .+||||||||++||||++.+|+||||||||++||..+.+.+.+.|++.. .+.|||+|+|+++.+.. ||+|+
T Consensus 392 ~~~----~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~ 467 (501)
T PRK11288 392 QLI----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIV 467 (501)
T ss_pred Ccc----ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEE
Confidence 333 4799999999999999999999999999999999999999999998764 47899999999999976 99999
Q ss_pred EEeCCEEeEecChhHHH
Q 000432 1468 VLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1468 VLd~G~IvE~Gtp~eLl 1484 (1513)
+|++|++++.|++++..
T Consensus 468 ~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 468 VMREGRIAGELAREQAT 484 (501)
T ss_pred EEECCEEEEEEccccCC
Confidence 99999999999998765
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-61 Score=655.53 Aligned_cols=216 Identities=17% Similarity=0.231 Sum_probs=188.3
Q ss_pred CceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhc
Q 000432 1259 VGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSR 1338 (1513)
Q Consensus 1259 ~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~ 1338 (1513)
...|+++|++++|+.+...+|+||||+|++||.+||+|++|||||||+++|.|+.+|++|+|.++|.++.+ +.++.|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 34699999999997533469999999999999999999999999999999999999999999999999976 56678899
Q ss_pred eEEEcCCCcccc-CcHhhccCCC---CCCCH----HHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHH
Q 000432 1339 LGIIPQDPTLFD-GTVRGNLDPL---VQYSD----KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLG 1410 (1513)
Q Consensus 1339 isiVpQdp~LF~-gTIR~NLdp~---~~~sd----eei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LA 1410 (1513)
|||+||++.++. -|+||||..+ ...+. +.+.++++.+++.++.++. ...||||||||++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~-----------~~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRL-----------AGTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCC-----------hhhCCHHHHHHHHHH
Confidence 999999999886 4999999642 12222 3355678888887654333 246899999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhc
Q 000432 1411 RTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1411 RALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
|||+.+|+||+|||||++||+.+.+.+.+.|++.. +++|||+++|+++.+.. ||||++|++|++++.|++++|.++
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 99999999999999999999999999999998863 58999999999999986 999999999999999999999765
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-64 Score=631.82 Aligned_cols=441 Identities=22% Similarity=0.328 Sum_probs=332.0
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccC--CCcEEEECC--------------
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQK--MAGTVKISG-------------- 695 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~--~~G~i~~~g-------------- 695 (1513)
++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 688999999953 4799999999999999999999999999999999999986 799999987
Q ss_pred eEEEEcCCCcccCc-cHHHHHccCCCC-------CchHHHHHHHHHhcHHHHhhccCCCCccc-cCCCCCCChHHHHHHH
Q 000432 696 TKAYVPQSPWILTG-NIRENILFGNQY-------DSCKYDRTVEACALVKDFELFASGDLTEI-GERGINMSGGQKQRIQ 766 (1513)
Q Consensus 696 ~~ayv~Q~~~l~~~-ti~eNI~fg~~~-------~~~~~~~v~~~~~l~~d~~~l~~Gd~T~I-ge~g~~LSGGQkqRi~ 766 (1513)
.++||+|++.++.. |++||+.++... +.+..++.+ .+-++.+. ..... .....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~--l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRA-----KNLLRELQ--LDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHH-----HHHHHHcC--CCCCcccCchhhCCHHHHHHHH
Confidence 27999999987764 999999987532 111111111 11122221 11011 1234579999999999
Q ss_pred HHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000432 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI-LKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLK 844 (1513)
Q Consensus 767 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~ 844 (1513)
||||++.+|+++||||||++||+.+.+.+.+ .+..+ .+++|+|+|||+++++.. ||+|++|++|+++..|+.+++.
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~- 229 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLD-IIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS- 229 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC-
Confidence 9999999999999999999999999888765 55544 357899999999999865 9999999999997654311000
Q ss_pred cCccHHHHHHhhhhhhhhhcccccCCCCCCCCCCCCccCcCccccccccccCCCccchhhhhhhhcCCCchhhhHhhhcc
Q 000432 845 QNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGGKLVQEEEREKGS 924 (1513)
Q Consensus 845 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~ 924 (1513)
. . +
T Consensus 230 -----------------------------------------------------------~-~-----------~------ 232 (500)
T TIGR02633 230 -----------------------------------------------------------E-D-----------D------ 232 (500)
T ss_pred -----------------------------------------------------------H-H-----------H------
Confidence 0 0 0
Q ss_pred cchHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 925 IGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAML 1004 (1513)
Q Consensus 925 v~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~ 1004 (1513)
. +....
T Consensus 233 ----~----~~~~~------------------------------------------------------------------ 238 (500)
T TIGR02633 233 ----I----ITMMV------------------------------------------------------------------ 238 (500)
T ss_pred ----H----HHHHh------------------------------------------------------------------
Confidence 0 00000
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000432 1005 VAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVF 1084 (1513)
Q Consensus 1005 ~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~ 1084 (1513)
T Consensus 239 -------------------------------------------------------------------------------- 238 (500)
T TIGR02633 239 -------------------------------------------------------------------------------- 238 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHH
Q 000432 1085 VIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAM 1164 (1513)
Q Consensus 1085 lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~ 1164 (1513)
+
T Consensus 239 ----------------------------------------------------~--------------------------- 239 (500)
T TIGR02633 239 ----------------------------------------------------G--------------------------- 239 (500)
T ss_pred ----------------------------------------------------C---------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000432 1165 EWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAP 1244 (1513)
Q Consensus 1165 ~wl~~~l~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~ 1244 (1513)
. ... + ..+.+..
T Consensus 240 --------------------------~-~~~------------------------------------~-----~~~~~~~ 251 (500)
T TIGR02633 240 --------------------------R-EIT------------------------------------S-----LYPHEPH 251 (500)
T ss_pred --------------------------c-ccc------------------------------------c-----ccccccc
Confidence 0 000 0 0000000
Q ss_pred CcccCCCCCCCCCCCceEEEEEEEEEEcCC-CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC-CCcEEEE
Q 000432 1245 LVTEECRPPSNWPDVGTISFHNLQIRYAEH-LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP-TMGSIII 1322 (1513)
Q Consensus 1245 ~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~-~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep-~~G~I~I 1322 (1513)
+ +..-.|+++|++++|+.+ ...+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+
T Consensus 252 -------~----~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~ 320 (500)
T TIGR02633 252 -------E----IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFI 320 (500)
T ss_pred -------C----CCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEE
Confidence 0 011259999999999432 23599999999999999999999999999999999999995 8999999
Q ss_pred cCeeCCCCCh-HHhhhceEEEcCCC---cccc-CcHhhccCCCC-----C---CC----HHHHHHHHHHcCCcHHHHhhh
Q 000432 1323 DNVDITKIGL-HDLRSRLGIIPQDP---TLFD-GTVRGNLDPLV-----Q---YS----DKQVWEALDKCQLGDLVRAKE 1385 (1513)
Q Consensus 1323 DGvdI~~i~l-~~LR~~isiVpQdp---~LF~-gTIR~NLdp~~-----~---~s----deei~~aL~~~~l~~~I~~lp 1385 (1513)
+|.++...+. ..+|++++++||++ .+|. -|+++|+.... . .. .+++.+++++.++.+
T Consensus 321 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------ 394 (500)
T TIGR02633 321 NGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT------ 394 (500)
T ss_pred CCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC------
Confidence 9999875443 56788999999997 3665 59999996421 1 11 134566677776531
Q ss_pred ccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-c
Q 000432 1386 EKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-S 1463 (1513)
Q Consensus 1386 ~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~ 1463 (1513)
.-.|.++ ..||||||||++||||++++|++|||||||++||..+.+.+.+.|++.. ++.|||+|+|+++.+.. |
T Consensus 395 ~~~~~~~----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~ 470 (500)
T TIGR02633 395 ASPFLPI----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLS 470 (500)
T ss_pred CCccCcc----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC
Confidence 0123333 4699999999999999999999999999999999999999999888753 47899999999999976 9
Q ss_pred CEEEEEeCCEEeEecChhHH
Q 000432 1464 DLVLVLSDGRIAEYDSPTKL 1483 (1513)
Q Consensus 1464 DrIlVLd~G~IvE~Gtp~eL 1483 (1513)
|+|++|++|+++..++..++
T Consensus 471 d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 471 DRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred CEEEEEECCEEEEEEccccC
Confidence 99999999999987765543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-61 Score=664.40 Aligned_cols=472 Identities=18% Similarity=0.192 Sum_probs=364.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 383 LGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFY-SNYMFMLPVQISLAIYILRTNLGLGSLAA 461 (1513)
Q Consensus 383 ~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~l~~L~~~lg~~~l~~ 461 (1513)
.+.+....+...+|++.++.+..+++++++|+|+|++++|++.+.+.+.. +..+....+.++.++++++....+.+++.
T Consensus 1025 ~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~ 1104 (1560)
T PTZ00243 1025 AMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVAL 1104 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444557778999999999999999999999999999999999997753 33344444444444443333222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 462 LAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATS 541 (1513)
Q Consensus 462 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~ 541 (1513)
++++++...+...+.+..+..++.....++.-.+.++|.++|+++||.|++|+.|.++..+.-+...+...+......+.
T Consensus 1105 i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~ 1184 (1560)
T PTZ00243 1105 VPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWL 1184 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222333344455555555566677777899999999999999999999998887665444333222221121111
Q ss_pred HHHH--HHHHHHHHHHHHHHHH--HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 000432 542 AFIF--WGSPTFISVVTFGACM--LLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQR 617 (1513)
Q Consensus 542 ~~~~--~~~p~~v~~~~f~~~~--~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~ 617 (1513)
.... ......+.++.++.+. ...+.+++|.+..++.+...+..|+..+...+..+.++.+|++||.++++..+.++
T Consensus 1185 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~ 1264 (1560)
T PTZ00243 1185 GVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHED 1264 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 1111 1111111222222222 22345789988888888899999999999999999999999999999996322110
Q ss_pred -cc-----------------------c-ccc-----CCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEe
Q 000432 618 -DA-----------------------V-EYV-----PKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICG 667 (1513)
Q Consensus 618 -~~-----------------------~-~~~-----~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG 667 (1513)
.. . ... +.....+.|+|+|++|+|+++ .+++|+|+||+|++||++||||
T Consensus 1265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVG 1343 (1560)
T PTZ00243 1265 MPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVG 1343 (1560)
T ss_pred cccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEEC
Confidence 00 0 000 111123579999999999753 3569999999999999999999
Q ss_pred cCCCcHHHHHHHHhcCccCCCcEEEECCe-------------EEEEcCCCcccCccHHHHHccCCCCCchHHHHHHHHHh
Q 000432 668 TVGSGKSSLLSCILGEIQKMAGTVKISGT-------------KAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACA 734 (1513)
Q Consensus 668 ~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------~ayv~Q~~~l~~~ti~eNI~fg~~~~~~~~~~v~~~~~ 734 (1513)
++|||||||+++|+|+++|.+|+|.+||. ++||||+|.||+|||||||..+.++++++..++++.|+
T Consensus 1344 rTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~ 1423 (1560)
T PTZ00243 1344 RTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVG 1423 (1560)
T ss_pred CCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCC
Confidence 99999999999999999999999999994 49999999999999999999877788899999999999
Q ss_pred cHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcC-CCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEc
Q 000432 735 LVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQD-ADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVT 813 (1513)
Q Consensus 735 l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~-~~illLDep~salD~~~~~~i~~~~~~~~~~~~Tvilvt 813 (1513)
+.+.++.+|+|++|.|||+|.||||||||||+||||++++ |+|+|||||||+||+++++.| ++.++...+++|+|+||
T Consensus 1424 l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~I-q~~L~~~~~~~TvI~IA 1502 (1560)
T PTZ00243 1424 LRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQI-QATVMSAFSAYTVITIA 1502 (1560)
T ss_pred ChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHH-HHHHHHHCCCCEEEEEe
Confidence 9999999999999999999999999999999999999996 899999999999999998777 56788778899999999
Q ss_pred cCCCccccCCEEEEEeCCeEEEecChHHHHhc-CccHHHHHHhh
Q 000432 814 HQVEFLPAADIILVMENGRIAQAGRFEELLKQ-NIGFEVLVGAH 856 (1513)
Q Consensus 814 H~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~l~~~~ 856 (1513)
||++++..||+|+||++|+|++.|+|+||+++ ++.|.++++..
T Consensus 1503 HRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1503 HRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred ccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999999999999999974 78999998654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-63 Score=623.49 Aligned_cols=434 Identities=21% Similarity=0.346 Sum_probs=327.4
Q ss_pred EeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe--------------EEEE
Q 000432 635 VNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT--------------KAYV 700 (1513)
Q Consensus 635 ~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~--------------~ayv 700 (1513)
+|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|. ++||
T Consensus 2 ~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 2 SNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 578899953 47999999999999999999999999999999999999999999999873 6999
Q ss_pred cCCCcccC-ccHHHHHccCCC-C-----CchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhc
Q 000432 701 PQSPWILT-GNIRENILFGNQ-Y-----DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQ 773 (1513)
Q Consensus 701 ~Q~~~l~~-~ti~eNI~fg~~-~-----~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~ 773 (1513)
+|++.++. .|++||+.++.. . +.+...+.++ +-++.+ |..........+|||||||||+||||+..
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTK-----AIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHH-----HHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 99997765 599999998642 1 1111111111 112222 22222344567899999999999999999
Q ss_pred CCCEEEeeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHhcCccHHH
Q 000432 774 DADIYLLDDPFSAVDAHTGTQLFKDCLMGI-LKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQNIGFEV 851 (1513)
Q Consensus 774 ~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 851 (1513)
+|+++||||||++||+.+.+.+.+ .+..+ .+++|+|+|||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~------- 223 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFT-IIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTM------- 223 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCH-------
Confidence 999999999999999999888865 45544 357899999999998764 99999999999987665322100
Q ss_pred HHHhhhhhhhhhcccccCCCCCCCCCCCCccCcCccccccccccCCCccchhhhhhhhcCCCchhhhHhhhcccchHHHH
Q 000432 852 LVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGGKLVQEEEREKGSIGKEVYW 931 (1513)
Q Consensus 852 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~~~ 931 (1513)
+ + .
T Consensus 224 ------------------------------------------------------~-----------~-~----------- 226 (491)
T PRK10982 224 ------------------------------------------------------D-----------K-I----------- 226 (491)
T ss_pred ------------------------------------------------------H-----------H-H-----------
Confidence 0 0 0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 932 SYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLR 1011 (1513)
Q Consensus 932 ~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~ 1011 (1513)
..... . ..
T Consensus 227 --~~~~~-------------------------------~-----~~---------------------------------- 234 (491)
T PRK10982 227 --IAMMV-------------------------------G-----RS---------------------------------- 234 (491)
T ss_pred --HHHHh-------------------------------C-----CC----------------------------------
Confidence 00000 0 00
Q ss_pred HHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000432 1012 TAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVT 1091 (1513)
Q Consensus 1012 ~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv~ip~~ 1091 (1513)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 000432 1092 GICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRL 1171 (1513)
Q Consensus 1092 ~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l 1171 (1513)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccCCC
Q 000432 1172 NLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECR 1251 (1513)
Q Consensus 1172 ~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~~~~~~ 1251 (1513)
. .+ ..+.+. .
T Consensus 235 ----------------------~------------------------------------~~-----~~~~~~----~--- 244 (491)
T PRK10982 235 ----------------------L------------------------------------TQ-----RFPDKE----N--- 244 (491)
T ss_pred ----------------------c------------------------------------cc-----cccccc----C---
Confidence 0 00 000000 0
Q ss_pred CCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC
Q 000432 1252 PPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG 1331 (1513)
Q Consensus 1252 ~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~ 1331 (1513)
+ +....|+++|++++|+ .+|+|+||+|++||++||+|++|||||||+++|.|+.+|++|+|.+||.++...+
T Consensus 245 ~----~~~~~i~~~~l~~~~~----~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~ 316 (491)
T PRK10982 245 K----PGEVILEVRNLTSLRQ----PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHN 316 (491)
T ss_pred C----CCCcEEEEeCcccccC----cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCC
Confidence 0 0112599999999852 4899999999999999999999999999999999999999999999999998776
Q ss_pred hHH-hhhceEEEcCCCc---ccc-CcHhhc-----cCCC----CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhc
Q 000432 1332 LHD-LRSRLGIIPQDPT---LFD-GTVRGN-----LDPL----VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVA 1393 (1513)
Q Consensus 1332 l~~-LR~~isiVpQdp~---LF~-gTIR~N-----Ldp~----~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~ 1393 (1513)
... +|+.++|+||++. +|. .|+++| +... +..+ ++++.++++..++.+ +.+|.+
T Consensus 317 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~-- 388 (491)
T PRK10982 317 ANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT------PGHRTQ-- 388 (491)
T ss_pred HHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccC------CCcccc--
Confidence 544 5778999999963 565 467666 3211 1112 123444555544421 112333
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeC
Q 000432 1394 ENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSD 1471 (1513)
Q Consensus 1394 e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~ 1471 (1513)
..+||||||||++||||++++|+||||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||||++|++
T Consensus 389 --~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~ 466 (491)
T PRK10982 389 --IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSN 466 (491)
T ss_pred --cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999997753 48899999999999876 999999999
Q ss_pred CEEeEecChhHH
Q 000432 1472 GRIAEYDSPTKL 1483 (1513)
Q Consensus 1472 G~IvE~Gtp~eL 1483 (1513)
|+++..+++.++
T Consensus 467 g~i~~~~~~~~~ 478 (491)
T PRK10982 467 GLVAGIVDTKTT 478 (491)
T ss_pred CEEEEEEccccC
Confidence 999988877543
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-63 Score=624.57 Aligned_cols=439 Identities=21% Similarity=0.306 Sum_probs=331.7
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------E
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------K 697 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------~ 697 (1513)
-++++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 3789999999963 46999999999999999999999999999999999999999999998762 5
Q ss_pred EEEcCCCcc---------cCccHHHHHccCCCCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHH
Q 000432 698 AYVPQSPWI---------LTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIA 768 (1513)
Q Consensus 698 ayv~Q~~~l---------~~~ti~eNI~fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lA 768 (1513)
+|++|++-+ +..|++||+.++.. ++++.++.++..++.+. ......+||||||||++||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITAL-----------LDRRFKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhh-----------hhCCcccCCHHHHHHHHHH
Confidence 899998743 14589999876521 12334444444444321 2334568999999999999
Q ss_pred HHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 000432 769 RAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQN 846 (1513)
Q Consensus 769 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 846 (1513)
||+..+|++|||||||++||+.+.+.+.+ .+..+. +++|+|+|||+++.+.. ||+|++|++|+++..|+++++.+..
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 226 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAE-LLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA 226 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcch
Confidence 99999999999999999999999887765 555443 47899999999998765 9999999999999888766643210
Q ss_pred ccHHHHHHhhhhhhhhhcccccCCCCCCCCCCCCccCcCccccccccccCCCccchhhhhhhhcCCCchhhhHhhhcccc
Q 000432 847 IGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGGKLVQEEEREKGSIG 926 (1513)
Q Consensus 847 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~ 926 (1513)
. ...+ . ..+ .
T Consensus 227 ~-~~~~-----------------------------------------------------~---------~~~-~------ 236 (490)
T PRK10938 227 L-VAQL-----------------------------------------------------A---------HSE-Q------ 236 (490)
T ss_pred h-hhhh-----------------------------------------------------h---------hhh-c------
Confidence 0 0000 0 000 0
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 927 KEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVA 1006 (1513)
Q Consensus 927 ~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~ 1006 (1513)
. ... .
T Consensus 237 ----------~-------------------------------~~~----~------------------------------ 241 (490)
T PRK10938 237 ----------L-------------------------------EGV----Q------------------------------ 241 (490)
T ss_pred ----------c-------------------------------Ccc----c------------------------------
Confidence 0 000 0
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000432 1007 ITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVI 1086 (1513)
Q Consensus 1007 ~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv 1086 (1513)
T Consensus 242 -------------------------------------------------------------------------------- 241 (490)
T PRK10938 242 -------------------------------------------------------------------------------- 241 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 000432 1087 FIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEW 1166 (1513)
Q Consensus 1087 ~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1166 (1513)
T Consensus 242 -------------------------------------------------------------------------------- 241 (490)
T PRK10938 242 -------------------------------------------------------------------------------- 241 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Q 000432 1167 LCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLV 1246 (1513)
Q Consensus 1167 l~~~l~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~ 1246 (1513)
.+.. . ++..+.
T Consensus 242 ----------------------~~~~---------------------------------------------~-~~~~~~- 252 (490)
T PRK10938 242 ----------------------LPEP---------------------------------------------D-EPSARH- 252 (490)
T ss_pred ----------------------cCcc---------------------------------------------c-cccccc-
Confidence 0000 0 000000
Q ss_pred ccCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC-CCcEEEEcCe
Q 000432 1247 TEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP-TMGSIIIDNV 1325 (1513)
Q Consensus 1247 ~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep-~~G~I~IDGv 1325 (1513)
..+ .....|+++|++++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.
T Consensus 253 ----~~~---~~~~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~ 323 (490)
T PRK10938 253 ----ALP---ANEPRIVLNNGVVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGR 323 (490)
T ss_pred ----ccC---CCCceEEEeceEEEECCe--eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecc
Confidence 000 011259999999999643 499999999999999999999999999999999998875 6999999998
Q ss_pred eCCC-CChHHhhhceEEEcCCCcccc---CcHhhccCCC--C------CCC---HHHHHHHHHHcCCcH-HHHhhhcccc
Q 000432 1326 DITK-IGLHDLRSRLGIIPQDPTLFD---GTVRGNLDPL--V------QYS---DKQVWEALDKCQLGD-LVRAKEEKLD 1389 (1513)
Q Consensus 1326 dI~~-i~l~~LR~~isiVpQdp~LF~---gTIR~NLdp~--~------~~s---deei~~aL~~~~l~~-~I~~lp~gLd 1389 (1513)
++.. ......|++++++||++.++. .|+++|+.+. . ... ++++.++++.+++.+ . .+
T Consensus 324 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~ 396 (490)
T PRK10938 324 RRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRT-------AD 396 (490)
T ss_pred cCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhh-------cc
Confidence 7632 234457889999999987643 4777776421 0 111 245677888887754 3 22
Q ss_pred chhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC-C-cEEEEeccChhhHhh--cCE
Q 000432 1390 STVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK-D-RTVVTIAHRIHTVID--SDL 1465 (1513)
Q Consensus 1390 t~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~-~-~TvI~IAHRl~ti~~--~Dr 1465 (1513)
.++ ..||||||||++|||||+++|+||+|||||++||+++.+.+.+.|++..+ + .|||+|+|+++.+.. ||+
T Consensus 397 ~~~----~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~ 472 (490)
T PRK10938 397 APF----HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHR 472 (490)
T ss_pred Cch----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhhee
Confidence 333 46999999999999999999999999999999999999999999988643 3 479999999999975 799
Q ss_pred EEEEeCCEEeEecC
Q 000432 1466 VLVLSDGRIAEYDS 1479 (1513)
Q Consensus 1466 IlVLd~G~IvE~Gt 1479 (1513)
|++|++|+|++.-+
T Consensus 473 v~~l~~G~i~~~~~ 486 (490)
T PRK10938 473 LEFVPDGDIYRYVQ 486 (490)
T ss_pred EEEecCCceEEeec
Confidence 99999999988643
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-62 Score=617.48 Aligned_cols=480 Identities=23% Similarity=0.314 Sum_probs=335.5
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC--eEEEEcCCCcccC
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--TKAYVPQSPWILT 708 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g--~~ayv~Q~~~l~~ 708 (1513)
-++++|++++|++ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ .++||+|+|+++.
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 5889999999962 24799999999999999999999999999999999999999999999874 6899999999885
Q ss_pred -ccHHHHHccCCCC------------------Cc---------hHHHHHHHHHhcHH-------HHhhccCCCCccccCC
Q 000432 709 -GNIRENILFGNQY------------------DS---------CKYDRTVEACALVK-------DFELFASGDLTEIGER 753 (1513)
Q Consensus 709 -~ti~eNI~fg~~~------------------~~---------~~~~~v~~~~~l~~-------d~~~l~~Gd~T~Ige~ 753 (1513)
.|++|||.++... ++ .++.++++.++..+ -++.+ |.. .....
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~-~~~~~ 158 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL--RCP-PWDAD 158 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC--CCC-cccCc
Confidence 5999999876310 01 11223333333211 11111 211 12445
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCe
Q 000432 754 GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGR 832 (1513)
Q Consensus 754 g~~LSGGQkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~-~d~i~vl~~G~ 832 (1513)
..+|||||||||+||||++.+|+++||||||++||+++.+.+.+ .+... ++|+|+|||+++++.. ||+|++|++|+
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~-~L~~~--~~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQ-HLQEY--PGTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHH-HHHhC--CCeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 67899999999999999999999999999999999999877754 55543 3699999999999876 89999999999
Q ss_pred EE-EecChHHHHhcCccHHHHHHhhhhhhhhhcccccCCCCCCCCCCCCccCcCccccccccccCCCccchhhhhhhhcC
Q 000432 833 IA-QAGRFEELLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKG 911 (1513)
Q Consensus 833 i~-~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 911 (1513)
++ ..|+++++.+.... ... . .
T Consensus 236 i~~~~g~~~~~~~~~~~---~~~----~----------------------------------------------~----- 257 (552)
T TIGR03719 236 GIPWEGNYSSWLEQKEK---RLE----Q----------------------------------------------E----- 257 (552)
T ss_pred EEEecCCHHHHHHHHHH---HHH----H----------------------------------------------H-----
Confidence 75 78998887642100 000 0 0
Q ss_pred CCchhhhHhhhcccchHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHH
Q 000432 912 GKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLT 991 (1513)
Q Consensus 912 ~~~~~~e~~~~g~v~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~ 991 (1513)
..+.++. ...+..... |+.
T Consensus 258 ---~~~~~~~---------~~~~~~~~~-----------------------~~~-------------------------- 276 (552)
T TIGR03719 258 ---EKEESAR---------QKALKRELE-----------------------WVR-------------------------- 276 (552)
T ss_pred ---HHHHHHH---------HHHHHHHHH-----------------------HHH--------------------------
Confidence 0000000 000000000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHH
Q 000432 992 VGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILG 1071 (1513)
Q Consensus 992 ~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~ 1071 (1513)
T Consensus 277 -------------------------------------------------------------------------------- 276 (552)
T TIGR03719 277 -------------------------------------------------------------------------------- 276 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHH
Q 000432 1072 TIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLID 1151 (1513)
Q Consensus 1072 ~l~v~~~~~~~l~lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d 1151 (1513)
+. ...++. + .
T Consensus 277 ---------------------------~~--~~~~~~-------~----------------------~------------ 286 (552)
T TIGR03719 277 ---------------------------SS--PKARQA-------K----------------------S------------ 286 (552)
T ss_pred ---------------------------hh--hhhHHH-------H----------------------H------------
Confidence 00 000000 0 0
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1152 NHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVE 1231 (1513)
Q Consensus 1152 ~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sve 1231 (1513)
+......+
T Consensus 287 ------------------------------------------------------------------------~~~~~~~~ 294 (552)
T TIGR03719 287 ------------------------------------------------------------------------KARLARYE 294 (552)
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 00000001
Q ss_pred HHHHhcCCCCCCCCcccCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 000432 1232 RILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1232 Ri~e~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~r 1311 (1513)
++.+. .++..+.......+...-+.+..|+++|++++|++. .+|+|+||+|++||++||+|++|||||||+++|.|
T Consensus 295 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G 370 (552)
T TIGR03719 295 ELLSQ--EFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG 370 (552)
T ss_pred hhhhh--cccccCCCceeecCCCCCCCCeEEEEeeEEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 11110 000000000000000000112369999999999643 59999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEcCeeCCCCChHHhhhceEEEcCCCc-ccc-CcHhhccCCCC---CC--CHHHHHHHHHHcCCcHHHHhh
Q 000432 1312 IVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPT-LFD-GTVRGNLDPLV---QY--SDKQVWEALDKCQLGDLVRAK 1384 (1513)
Q Consensus 1312 l~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~-LF~-gTIR~NLdp~~---~~--sdeei~~aL~~~~l~~~I~~l 1384 (1513)
+.+|++|+|.+++ + .+++|+||++. ++. -|+++|+.... .. .+.+..++++..++.+..
T Consensus 371 ~~~p~~G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--- 436 (552)
T TIGR03719 371 QEQPDSGTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD--- 436 (552)
T ss_pred CCCCCCeEEEECC-c----------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH---
Confidence 9999999999965 2 16999999973 664 59999996421 11 133455677777664211
Q ss_pred hccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-c
Q 000432 1385 EEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-S 1463 (1513)
Q Consensus 1385 p~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~ 1463 (1513)
.+.+ ...||||||||++||||++.+|+||||||||++||+.+...+.+.|++. . .|||+|+|+++.+.. |
T Consensus 437 ---~~~~----~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~ 507 (552)
T TIGR03719 437 ---QQKK----VGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIA 507 (552)
T ss_pred ---hcCc----hhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhC
Confidence 1222 3569999999999999999999999999999999999999999999876 3 499999999999876 9
Q ss_pred CEEEEEeC-CEEeEe-cChhHHHhc
Q 000432 1464 DLVLVLSD-GRIAEY-DSPTKLLER 1486 (1513)
Q Consensus 1464 DrIlVLd~-G~IvE~-Gtp~eLl~~ 1486 (1513)
|+|++|++ |+++++ |++++..+.
T Consensus 508 d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 508 THILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred CEEEEEECCCeEEEeCCCHHHHHHH
Confidence 99999997 688754 777776554
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-62 Score=617.51 Aligned_cols=481 Identities=23% Similarity=0.318 Sum_probs=335.7
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC--eEEEEcCCCcccC
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--TKAYVPQSPWILT 708 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g--~~ayv~Q~~~l~~ 708 (1513)
-|+++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++||+|+|++++
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDP 83 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 5899999999962 25799999999999999999999999999999999999999999999864 6899999999986
Q ss_pred c-cHHHHHccCCC-C--------------C-c-h-------HHHHHHHHHh----------cHHHHhhccCCCCccccCC
Q 000432 709 G-NIRENILFGNQ-Y--------------D-S-C-------KYDRTVEACA----------LVKDFELFASGDLTEIGER 753 (1513)
Q Consensus 709 ~-ti~eNI~fg~~-~--------------~-~-~-------~~~~v~~~~~----------l~~d~~~l~~Gd~T~Ige~ 753 (1513)
. |++||+.++.. + . . + ++.++.+.+. ..+-++.+ |.. ....+
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~-~~~~~ 160 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL--RCP-PWDAK 160 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC--CCC-cccCc
Confidence 5 99999987631 0 0 0 0 0111111110 00111111 111 12345
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCe
Q 000432 754 GINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGR 832 (1513)
Q Consensus 754 g~~LSGGQkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~-~d~i~vl~~G~ 832 (1513)
..+|||||||||+||||++++|+++|||||||+||+.+.+.+. +++... ++|+|+|||+++++.. ||+|++|++|+
T Consensus 161 ~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~-~~L~~~--~~tviiisHd~~~~~~~~d~i~~l~~g~ 237 (556)
T PRK11819 161 VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLE-QFLHDY--PGTVVAVTHDRYFLDNVAGWILELDRGR 237 (556)
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHH-HHHHhC--CCeEEEEeCCHHHHHhhcCeEEEEeCCE
Confidence 6689999999999999999999999999999999999987775 466554 3599999999999875 99999999999
Q ss_pred EE-EecChHHHHhcCccHHHHHHhhhhhhhhhcccccCCCCCCCCCCCCccCcCccccccccccCCCccchhhhhhhhcC
Q 000432 833 IA-QAGRFEELLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKG 911 (1513)
Q Consensus 833 i~-~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 911 (1513)
++ +.|+++++.+.... .... . . .
T Consensus 238 i~~~~g~~~~~~~~~~~-------~~~~---------------------~----------------------~-~----- 261 (556)
T PRK11819 238 GIPWEGNYSSWLEQKAK-------RLAQ---------------------E----------------------E-K----- 261 (556)
T ss_pred EEEecCCHHHHHHHHHH-------HHHH---------------------H----------------------H-H-----
Confidence 86 78998887543100 0000 0 0 0
Q ss_pred CCchhhhHhhhcccchHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHH
Q 000432 912 GKLVQEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLT 991 (1513)
Q Consensus 912 ~~~~~~e~~~~g~v~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~ 991 (1513)
+.++..+ .++.... |+
T Consensus 262 ----~~~~~~~----------~~~~~~~-----------------------~~--------------------------- 277 (556)
T PRK11819 262 ----QEAARQK----------ALKRELE-----------------------WV--------------------------- 277 (556)
T ss_pred ----HHHHHHH----------HHHHHHH-----------------------HH---------------------------
Confidence 0000000 0000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHH
Q 000432 992 VGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILG 1071 (1513)
Q Consensus 992 ~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~ 1071 (1513)
T Consensus 278 -------------------------------------------------------------------------------- 277 (556)
T PRK11819 278 -------------------------------------------------------------------------------- 277 (556)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHH
Q 000432 1072 TIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLID 1151 (1513)
Q Consensus 1072 ~l~v~~~~~~~l~lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d 1151 (1513)
.+. ...+.. .
T Consensus 278 --------------------------~~~--~~~~~~-~----------------------------------------- 287 (556)
T PRK11819 278 --------------------------RQS--PKARQA-K----------------------------------------- 287 (556)
T ss_pred --------------------------HHh--hhhhHH-H-----------------------------------------
Confidence 000 000000 0
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1152 NHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVE 1231 (1513)
Q Consensus 1152 ~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sve 1231 (1513)
.+......+
T Consensus 288 -----------------------------------------------------------------------~~~~~~~~~ 296 (556)
T PRK11819 288 -----------------------------------------------------------------------SKARLARYE 296 (556)
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 000000001
Q ss_pred HHHHhcCCCCCCCCcccCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 000432 1232 RILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1232 Ri~e~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~r 1311 (1513)
|..+. .+.+.+.......++...+.+..|+++||+++|++. .+|+|+||+|++||++||+|++|||||||+++|.|
T Consensus 297 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G 372 (556)
T PRK11819 297 ELLSE--EYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITG 372 (556)
T ss_pred Hhhcc--cccccCCCceeecCCCCCCCCeEEEEEeEEEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 11110 001100000000011111123469999999999643 59999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEcCeeCCCCChHHhhhceEEEcCCC-cccc-CcHhhccCCCC---C--CCHHHHHHHHHHcCCcHHHHhh
Q 000432 1312 IVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDP-TLFD-GTVRGNLDPLV---Q--YSDKQVWEALDKCQLGDLVRAK 1384 (1513)
Q Consensus 1312 l~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp-~LF~-gTIR~NLdp~~---~--~sdeei~~aL~~~~l~~~I~~l 1384 (1513)
+++|++|+|.+++ + .+++|+||++ .++. -|+++|+.... . ..+++..++++..++.+.
T Consensus 373 ~~~p~~G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~---- 437 (556)
T PRK11819 373 QEQPDSGTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG---- 437 (556)
T ss_pred CCCCCCeEEEECC-c----------eEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh----
Confidence 9999999999964 2 1699999997 5665 49999996421 1 123445567777776421
Q ss_pred hccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-c
Q 000432 1385 EEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-S 1463 (1513)
Q Consensus 1385 p~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~ 1463 (1513)
..+.. ...||||||||++||||++.+|++|||||||++||+.+...+.+.|++. + .|+|+|||+++.+.. |
T Consensus 438 --~~~~~----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~ 509 (556)
T PRK11819 438 --DQQKK----VGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIA 509 (556)
T ss_pred --HhcCc----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhC
Confidence 12233 3469999999999999999999999999999999999999999999875 4 499999999999876 9
Q ss_pred CEEEEEeC-CEEeE-ecChhHHHhcC
Q 000432 1464 DLVLVLSD-GRIAE-YDSPTKLLERE 1487 (1513)
Q Consensus 1464 DrIlVLd~-G~IvE-~Gtp~eLl~~~ 1487 (1513)
|+|++|++ |++.+ .|+++++++++
T Consensus 510 d~i~~l~~~g~~~~~~g~~~~~~~~~ 535 (556)
T PRK11819 510 THILAFEGDSQVEWFEGNFQEYEEDK 535 (556)
T ss_pred CEEEEEECCCeEEEecCCHHHHHHHH
Confidence 99999996 88875 68888887663
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-62 Score=563.24 Aligned_cols=526 Identities=21% Similarity=0.215 Sum_probs=395.1
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 000432 948 LAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRA 1027 (1513)
Q Consensus 948 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~ 1027 (1513)
+++.+..++.+..+.++--.-|.........+......+-+++.++..++..+|+..+.+.|.+.-.++....|...+++
T Consensus 30 lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~ 109 (580)
T COG4618 30 LFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSA 109 (580)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 33444555666666555433333321111112222223334445667888999999999999999999999999999888
Q ss_pred CcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1028 PMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARE 1107 (1513)
Q Consensus 1028 p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv~ip~~~l~~~~~~~y~~~~r~ 1107 (1513)
|..--......+.+ +|.+++..++...-...+...--+-..+++++.+.|++.++.+.-.++.+.+...--...++
T Consensus 110 ~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~ 185 (580)
T COG4618 110 PLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRK 185 (580)
T ss_pred HHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77644333333333 57888888877644444444333445566777788888776544333322222222222233
Q ss_pred HHHHHHHHhchHHHHHHHHHchHHHHHHhchHHH----HHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1108 LARLAEIQRAPILHHFAESLAGAATIHAFDQEDR----FTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSL 1183 (1513)
Q Consensus 1108 l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~----f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~ 1183 (1513)
-.+..++....-.++..-+..+.++|+|.|...+ +.+.+.+.++.+.++.........---..-.++.+.+....+
T Consensus 186 p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA 265 (580)
T COG4618 186 PLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGA 265 (580)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcce
Confidence 3333444555667788889999999999998764 455555555555554443332222111111122222223232
Q ss_pred HHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCceEE
Q 000432 1184 VVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTIS 1263 (1513)
Q Consensus 1184 ~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~~~~~~~~~~wp~~g~I~ 1263 (1513)
.++..|.+++|.+...--..-....++-..+..|-++-....|..|+.+.++..++..... +.| ..+|.+.
T Consensus 266 ---~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m---~LP---~P~g~L~ 336 (580)
T COG4618 266 ---WLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERM---PLP---APQGALS 336 (580)
T ss_pred ---eeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCC---CCC---CCCceee
Confidence 2345889999887665555556667788899999999999999999999997655433211 111 1268999
Q ss_pred EEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEc
Q 000432 1264 FHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIP 1343 (1513)
Q Consensus 1264 f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVp 1343 (1513)
++++++.=++...++|+||||+++|||-+|||||||||||||.++|.|...|.+|.|.+||-|+++.+.++|=++|||.|
T Consensus 337 Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLP 416 (580)
T COG4618 337 VERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLP 416 (580)
T ss_pred EeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCc
Confidence 99999976666678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCcHhhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000432 1344 QDPTLFDGTVRGNLDPLV-QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVL 1422 (1513)
Q Consensus 1344 Qdp~LF~gTIR~NLdp~~-~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiL 1422 (1513)
||..||+|||+|||.-++ +.++|.|.+|.+.++.||.|.++|+||||.|||+|..|||||||||+||||++.+|+++||
T Consensus 417 QdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVL 496 (580)
T COG4618 417 QDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVL 496 (580)
T ss_pred ccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEe
Confidence 999999999999997554 8889999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhc
Q 000432 1423 DEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1423 DEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
|||-||||.+-|+.+.++|.+.. +++|+|+||||.+.+..+|+|+||++|++..||+-+|.+++
T Consensus 497 DEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 497 DEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred cCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999987654 69999999999999999999999999999999999999875
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-62 Score=545.34 Aligned_cols=457 Identities=25% Similarity=0.397 Sum_probs=344.5
Q ss_pred eEEEEeEEEEeCC-CCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccC-----CCcEEEECC---------
Q 000432 631 EVEVVNGKFSWNP-ESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQK-----MAGTVKISG--------- 695 (1513)
Q Consensus 631 ~I~~~~~sf~~~~-~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~-----~~G~i~~~g--------- 695 (1513)
-++++|.+.++.. +....++++|||+|++||.+|+||+||||||--.++++|+++. -+|+|..+|
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 4667777766643 2346799999999999999999999999999999999999975 468999877
Q ss_pred --------eEEEEcCCCccc-Cc--cH----HHHHccCCCCCchHH-HHHHHHHhcHHHHhhccCCCCccccCCCCCCCh
Q 000432 696 --------TKAYVPQSPWIL-TG--NI----RENILFGNQYDSCKY-DRTVEACALVKDFELFASGDLTEIGERGINMSG 759 (1513)
Q Consensus 696 --------~~ayv~Q~~~l~-~~--ti----~eNI~fg~~~~~~~~-~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSG 759 (1513)
+|++++|+|.-- |- || .|-|...+....+.. .++++...+. .+|+- .-.+..-...|||
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~V----gI~~p-~~rl~~yPHeLSG 160 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELV----GIPEP-EKRLDAYPHELSG 160 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc----CCCch-hhhhhhCCcccCc
Confidence 479999999432 21 44 444545444433222 1222211110 11110 1123344678999
Q ss_pred HHHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEe
Q 000432 760 GQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQA 836 (1513)
Q Consensus 760 GQkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~ 836 (1513)
||||||.||.||..+||+||-||||.|||..+..+|.+ +++.+. .|-.+++|||++..... ||+|+||.+|+++|.
T Consensus 161 GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~-Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~ 239 (534)
T COG4172 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD-LLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVET 239 (534)
T ss_pred chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHH-HHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeec
Confidence 99999999999999999999999999999999999975 565543 37899999999999876 999999999999999
Q ss_pred cChHHHHhcCc-cHHHHHHhhhhhhhhhcccccCCCCCCCCCCCCccCcCccccccccccCCCccchhhhhhhhcCCCch
Q 000432 837 GRFEELLKQNI-GFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGGKLV 915 (1513)
Q Consensus 837 g~~~~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 915 (1513)
|+.+++.+... .|....-
T Consensus 240 ~~t~~lF~~PqHpYTr~Ll------------------------------------------------------------- 258 (534)
T COG4172 240 GTTETLFAAPQHPYTRKLL------------------------------------------------------------- 258 (534)
T ss_pred CcHHHHhhCCCChHHHHHH-------------------------------------------------------------
Confidence 98777654321 0000000
Q ss_pred hhhHhhhcccchHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 000432 916 QEEEREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSS 995 (1513)
Q Consensus 916 ~~e~~~~g~v~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~ 995 (1513)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 996 LCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGV 1075 (1513)
Q Consensus 996 ~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v 1075 (1513)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhch
Q 000432 1076 MSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSR 1155 (1513)
Q Consensus 1076 ~~~~~~~l~lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~ 1155 (1513)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1156 PWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQ 1235 (1513)
Q Consensus 1156 ~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e 1235 (1513)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCCCCCcccCCCCCCCCCCCceEEEEEEEEEEcCC---------CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHH
Q 000432 1236 YSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEH---------LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLI 1306 (1513)
Q Consensus 1236 ~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~---------~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl 1306 (1513)
+ .|+. +..+|..-...--++.+||.+.|+-. .-.+.+||||+.++||.+||||+||||||||-
T Consensus 259 --~--aeP~----g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG 330 (534)
T COG4172 259 --A--AEPS----GDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLG 330 (534)
T ss_pred --h--cCCC----CCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHH
Confidence 0 0000 00000000112246666666666321 12378999999999999999999999999999
Q ss_pred HHHhccCCCCCcEEEEcCeeCCCCChHH---hhhceEEEcCCCc--cc-cCcHhhccC----CCC-CC----CHHHHHHH
Q 000432 1307 QAIFRIVEPTMGSIIIDNVDITKIGLHD---LRSRLGIIPQDPT--LF-DGTVRGNLD----PLV-QY----SDKQVWEA 1371 (1513)
Q Consensus 1307 ~lL~rl~ep~~G~I~IDGvdI~~i~l~~---LR~~isiVpQdp~--LF-~gTIR~NLd----p~~-~~----sdeei~~a 1371 (1513)
++|+|+.+++ |+|..+|.||...+.++ +|+++-+|+|||+ |= ..||-+-|. -.+ .. .|+.+.+|
T Consensus 331 ~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~a 409 (534)
T COG4172 331 LALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEA 409 (534)
T ss_pred HHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHH
Confidence 9999999876 99999999999988777 6899999999997 21 124444332 111 12 35678999
Q ss_pred HHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcE
Q 000432 1372 LDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRT 1449 (1513)
Q Consensus 1372 L~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~T 1449 (1513)
|+.+||+.-...- | ...+||||||||+||||+.-+|++++||||||+||..-.++|.+.+++.- .+-+
T Consensus 410 L~EVGLDp~~r~R---Y-------PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~Ls 479 (534)
T COG4172 410 LEEVGLDPATRNR---Y-------PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLS 479 (534)
T ss_pred HHHcCCChhHhhc---C-------CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCe
Confidence 9999998754421 1 24589999999999999999999999999999999999999999998764 3679
Q ss_pred EEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcCChHHHH
Q 000432 1450 VVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDSFFSQ 1493 (1513)
Q Consensus 1450 vI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~ 1493 (1513)
-++|+|+|..++. ||+|+||.+|+|||+|.-+++.+++...|-+
T Consensus 480 YLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 480 YLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred EEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHH
Confidence 9999999999987 9999999999999999999999998877754
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-60 Score=608.83 Aligned_cols=199 Identities=20% Similarity=0.325 Sum_probs=168.5
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++||+++|++ ..+|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.+++. .+++
T Consensus 312 ~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLG 378 (638)
T ss_pred eEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEE
Confidence 6999999999964 35999999999999999999999999999999999999999999999741 2699
Q ss_pred EEcCCC--cccc-CcHhhccCC-CCCCCHHHHHHHHHHcCCcH-HHHhhhccccchhccCCCCCChhHHHHHHHHHHHcc
Q 000432 1341 IIPQDP--TLFD-GTVRGNLDP-LVQYSDKQVWEALDKCQLGD-LVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLK 1415 (1513)
Q Consensus 1341 iVpQdp--~LF~-gTIR~NLdp-~~~~sdeei~~aL~~~~l~~-~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr 1415 (1513)
|+||++ .++. .|+.+|+.. .....++++.+.|+..++.+ .. +.++ ..||||||||++||||+++
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~-------~~~~----~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKV-------TEET----RRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHh-------cCch----hhCCHHHHHHHHHHHHHhc
Confidence 999985 3443 378887632 12334567788888888742 22 2333 4699999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEe-EecChhHHHh
Q 000432 1416 KSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIA-EYDSPTKLLE 1485 (1513)
Q Consensus 1416 ~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~Iv-E~Gtp~eLl~ 1485 (1513)
+|+||||||||++||..+...+.+.|++. . .|||+|+|++..+.. ||+|++|++|+++ ..|++++..+
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999999999999999999875 4 599999999999876 9999999999998 5788888743
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-59 Score=639.05 Aligned_cols=473 Identities=19% Similarity=0.195 Sum_probs=363.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 380 ARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFY-SNYMFMLPVQISLAIYILRTNLGLGS 458 (1513)
Q Consensus 380 ~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~l~~L~~~lg~~~ 458 (1513)
..+.+.+....+...++++.++.+..++++.++|+|+|+++.|++.+.+.+.. +..+....+.+++.+++++...++.+
T Consensus 949 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~ 1028 (1490)
T TIGR01271 949 LVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIF 1028 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888889999999999999999999999999999999999987753 33444444444444444433333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 459 LAALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLS 538 (1513)
Q Consensus 459 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~ 538 (1513)
++.++++++++.+..+..+..+..++.....+....+.+.|.++|+.+||.|++|+.|.++..+.-+...+.........
T Consensus 1029 l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1108 (1490)
T TIGR01271 1029 IAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTL 1108 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222233333333344444455555566677778899999999999999999999999988775543222111111111
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 000432 539 ATSAFIFWG-SPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQR 617 (1513)
Q Consensus 539 ~~~~~~~~~-~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~ 617 (1513)
.+....... ...++.++ +...+.....++|.+-.++++...+..++..+...+..+..+.+|.+||.++++.+++..
T Consensus 1109 ~wl~~~~~~i~~~~~~~~--~~l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~ 1186 (1490)
T TIGR01271 1109 RWFQMRIDIIFVFFFIAV--TFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEP 1186 (1490)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 111111000 00011111 111111223456666667777778888999888999999999999999999997654322
Q ss_pred cccc----------------ccC-CCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHH
Q 000432 618 DAVE----------------YVP-KGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCI 680 (1513)
Q Consensus 618 ~~~~----------------~~~-~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~l 680 (1513)
...+ ..+ ..+..+.|+|+|++|+|+++ .+++|+|+||+|++||++||||++|||||||+++|
T Consensus 1187 ~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL 1265 (1490)
T TIGR01271 1187 RPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265 (1490)
T ss_pred cccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 1100 001 11234679999999999754 46899999999999999999999999999999999
Q ss_pred hcCccCCCcEEEECCe-------------EEEEcCCCcccCccHHHHHccCCCCCchHHHHHHHHHhcHHHHhhccCCCC
Q 000432 681 LGEIQKMAGTVKISGT-------------KAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDL 747 (1513)
Q Consensus 681 lg~~~~~~G~i~~~g~-------------~ayv~Q~~~l~~~ti~eNI~fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~ 747 (1513)
+|+++ .+|+|.+||. ++||||+|.+|+|||||||....++++++..++++.|++.+.++.+|+|++
T Consensus 1266 ~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLd 1344 (1490)
T TIGR01271 1266 LRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLD 1344 (1490)
T ss_pred hhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccc
Confidence 99997 7999999983 599999999999999999987777888999999999999999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEE
Q 000432 748 TEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILV 827 (1513)
Q Consensus 748 T~Ige~g~~LSGGQkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~v 827 (1513)
|.|||+|.|||||||||++||||++++|+|+|||||||+||++|++.| ++.++...+++|+|+||||++++..||+|+|
T Consensus 1345 t~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I-~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlv 1423 (1490)
T TIGR01271 1345 FVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQII-RKTLKQSFSNCTVILSEHRVEALLECQQFLV 1423 (1490)
T ss_pred cccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999997777 5677777889999999999999999999999
Q ss_pred EeCCeEEEecChHHHHhcCccHHHHHHhhh
Q 000432 828 MENGRIAQAGRFEELLKQNIGFEVLVGAHS 857 (1513)
Q Consensus 828 l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~ 857 (1513)
|++|+|++.|+|++|+++++.|.++++.+.
T Consensus 1424 L~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1424 IEGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred EECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 999999999999999988899999987554
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-59 Score=608.68 Aligned_cols=500 Identities=20% Similarity=0.231 Sum_probs=409.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHH
Q 000432 981 NIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLG 1060 (1513)
Q Consensus 981 ~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~ 1060 (1513)
..|....++..++.+++.--..+...+.|.++-..+-..+|++.+|+.-.--..+++|+|+|-++.|.+.+++.... +.
T Consensus 242 ~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~-~h 320 (1381)
T KOG0054|consen 242 YLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACF-LH 320 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHH-HH
Confidence 34444444555556666555666677889999999999999999999988878889999999999999999986543 34
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHH
Q 000432 1061 WCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQED 1140 (1513)
Q Consensus 1061 ~~~~~~~~~~~~l~v~~~~~~~l~lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~ 1140 (1513)
.+....++++.++.++...--+-+++.+.++++++-++.+..+..+..++.....+.......+|.++|+++||.|+||+
T Consensus 321 ~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~ 400 (1381)
T KOG0054|consen 321 LLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEK 400 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHH
Confidence 44455556665555554433333444444555666667777777777777777888889999999999999999999999
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1141 RFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNI 1220 (1513)
Q Consensus 1141 ~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~ 1220 (1513)
.|.++..+..++..+.............+.......++.+++....+....+.++|..+..++++.-.+..++..+-..+
T Consensus 401 ~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i 480 (1381)
T KOG0054|consen 401 PFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVI 480 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888777766555555444444333333333333222222244667889899999999999999999988889
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCceEEEEEEEEEEcCC-CCcceeeeeEEeeCCcEEEEEcCCC
Q 000432 1221 CNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEH-LPSVLKNISCTFPGRKKVGVVGRTG 1299 (1513)
Q Consensus 1221 ~~le~~~~sveRi~e~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~-~~~vLk~is~~I~~GekvgIVGrTG 1299 (1513)
..+-+..+|++|+.+|+..++..+..... .+.-+.+-.|+++|.+|++.++ .++.|+||||+|++||.+||||++|
T Consensus 481 ~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vG 557 (1381)
T KOG0054|consen 481 SQLVQAKVSLKRLKEFLLSEELDPDSVER---SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVG 557 (1381)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCcccccc---CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCC
Confidence 99999999999999999866543322211 1111334579999999999863 4459999999999999999999999
Q ss_pred CCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcH
Q 000432 1300 SGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGD 1379 (1513)
Q Consensus 1300 SGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~ 1379 (1513)
||||||+++++|-.+..+|++.++|. ++||||.|++|+|||||||.++.+++++...++++.|+|++
T Consensus 558 sGKSSLL~AiLGEm~~~sG~v~v~gs-------------iaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~ 624 (1381)
T KOG0054|consen 558 SGKSSLLSAILGEMPKLSGSVAVNGS-------------VAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKK 624 (1381)
T ss_pred CCHHHHHHHHhcCcccccceEEEcCe-------------EEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHh
Confidence 99999999999999999999999993 99999999999999999999999999999999999999999
Q ss_pred HHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH-HHHHHHhcCCcEEEEeccChh
Q 000432 1380 LVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVI-QKIISQEFKDRTVVTIAHRIH 1458 (1513)
Q Consensus 1380 ~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~I-q~~i~~~~~~~TvI~IAHRl~ 1458 (1513)
.++.+|.|-.|.|||+|.||||||||||+||||++++++|++||+|-||||+++.+.| ++.|+...+++|+|.+||.++
T Consensus 625 Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~ 704 (1381)
T KOG0054|consen 625 DLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ 704 (1381)
T ss_pred HHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh
Confidence 9999999999999999999999999999999999999999999999999999998877 567878889999999999999
Q ss_pred hHhhcCEEEEEeCCEEeEecChhHHHhcCChHHHHHHHHH
Q 000432 1459 TVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEY 1498 (1513)
Q Consensus 1459 ti~~~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~~~~ 1498 (1513)
.+.+||+|+||++|+|+|.|+|+||++. ++.|.++..+.
T Consensus 705 ~L~~ad~Iivl~~G~I~~~Gty~el~~~-~~~~~~l~~~~ 743 (1381)
T KOG0054|consen 705 FLPHADQIIVLKDGKIVESGTYEELLKS-GGDFAELAHEE 743 (1381)
T ss_pred hhhhCCEEEEecCCeEecccCHHHHHhc-chhHHHHhhcc
Confidence 9999999999999999999999999986 78888885543
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-58 Score=587.26 Aligned_cols=510 Identities=15% Similarity=0.153 Sum_probs=372.9
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 308 IFF-FIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLR 386 (1513)
Q Consensus 308 l~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 386 (1513)
+++ .+|+.++++.++.++..++..+.|++++.+++..... .. ...+.+++ ++ ++..++.....+...+.+.+
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~--~~-~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~ 83 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFL--GQ-GSLFSFGG-LC---LLALLFRIGADIFPAYAGMH 83 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--cc-hHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHH
Confidence 566 7788888889999999999999999999887632111 00 01111221 11 12223333444556778899
Q ss_pred HHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000432 387 LRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMFMLPVQISLAIYIL-RTNLGLGSLAALAAT 465 (1513)
Q Consensus 387 ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~~~l~~L-~~~lg~~~l~~l~~~ 465 (1513)
+...++..+|+|.++++..+++++++|++++++++|++.+.+++..+.......+.++++++++ +..+.++.+ .++.+
T Consensus 84 ~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li-~l~~~ 162 (555)
T TIGR01194 84 IIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAI-TISAI 162 (555)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999999999988754444443333333333332 333222222 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 466 LTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDT--RFLQKLESLRQVECIWLWKSLRLSATSAF 543 (1513)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~--~f~~~i~~~R~~E~~~~~~~~~~~~~~~~ 543 (1513)
++.+.+..+..++.++...+..+..++..+.+.|.++|++++|.++.|+ ...+++++..++..+...+..........
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
T TIGR01194 163 IIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAEN 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444555566677777788888999999999999999999854 33444443332222222211111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHh---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-
Q 000432 544 IFWGSPTFISVVTFGACMLL---GIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDA- 619 (1513)
Q Consensus 544 ~~~~~p~~v~~~~f~~~~~~---~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~- 619 (1513)
... ++..+.++.+++. .+.+|.|.+++++.+...+..|+..+.+.+..+.++++|.+||.++++.++.++..
T Consensus 243 ~~~----~~~~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~ 318 (555)
T TIGR01194 243 FGQ----LLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPEL 318 (555)
T ss_pred HHH----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 111 1111111111111 25899999999999999999999999999999999999999999998642211100
Q ss_pred --c--ccc---CCCCCcceEEEEeEEEEeCCCC--CCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcE
Q 000432 620 --V--EYV---PKGRSEFEVEVVNGKFSWNPES--SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT 690 (1513)
Q Consensus 620 --~--~~~---~~~~~~~~I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~ 690 (1513)
. ... +.......|+++|++|+|++++ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~ 398 (555)
T TIGR01194 319 ELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGE 398 (555)
T ss_pred cccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 0 000 1111235799999999997532 247999999999999999999999999999999999999999999
Q ss_pred EEECCe-------------EEEEcCCCcccCccHHHHHccCCCCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCC
Q 000432 691 VKISGT-------------KAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINM 757 (1513)
Q Consensus 691 i~~~g~-------------~ayv~Q~~~l~~~ti~eNI~fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~L 757 (1513)
|.++|. ++||+|+|++|++|+++|+ ..+.++++.+++++.+++.++++.+|+|++|. .+|
T Consensus 399 i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~L 471 (555)
T TIGR01194 399 ILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TAL 471 (555)
T ss_pred EEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccC
Confidence 999984 4899999999999999995 23345667788999999999999999999994 789
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCccccCCEEEEEeCCeEEEe
Q 000432 758 SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI-LKDKSVLYVTHQVEFLPAADIILVMENGRIAQA 836 (1513)
Q Consensus 758 SGGQkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~ 836 (1513)
||||||||+||||++++|+|+|||||||+||+++++.+.+..++.. .+++|+|+||||++.+..||+|++|++|++++.
T Consensus 472 SgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999998877655443 468999999999999999999999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-59 Score=539.68 Aligned_cols=529 Identities=21% Similarity=0.273 Sum_probs=431.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 302 PSIYKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGAR 381 (1513)
Q Consensus 302 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~ 381 (1513)
.....+..-.+++.++..+++..+-.++.+.+|+.+-+.-|-+-...+.+ ....+.++....+++..++.....+...
T Consensus 11 ~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~--TLv~Ltvlal~ly~~~glLd~iR~~~l~ 88 (580)
T COG4618 11 KNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVP--TLVMLTVLALGLYAFQGLLDAIRSRVLV 88 (580)
T ss_pred CchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777887888888888888999999998888888776544332 4455666666777888888888888889
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 382 QLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFY-----SNYMFMLPVQISLAIYILRTNLGL 456 (1513)
Q Consensus 382 ~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-----~~~~~~~pl~i~~~l~~L~~~lg~ 456 (1513)
|+|.++...|...+|.-+++.+..........+.+ .|.+.+..|+.. +.+.-.+|+-+.+ +|++...+|+
T Consensus 89 Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v-~fl~Hp~lG~ 163 (580)
T COG4618 89 RIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWMPLYLAV-IFLFHPWLGL 163 (580)
T ss_pred HHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchHHHHHHH-HHHHHHHHHH
Confidence 99999999999999999876555443333333444 389999998753 2333335665544 4667778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 457 GSLAALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLR 536 (1513)
Q Consensus 457 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~ 536 (1513)
.+++|.++++.+..+|-..++ +--++-.+..-++....+-.++|.++|+..|..+...+++.+.....+.+..+...
T Consensus 164 ~a~~ga~iLv~la~ln~~~t~---~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd 240 (580)
T COG4618 164 IALAGAIILVVLALLNERATR---KPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASD 240 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHH
Confidence 988888888777777755544 44445667778888999999999999999999999999998887777766665554
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000432 537 LSATSAFIFWGSP--TFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDE 614 (1513)
Q Consensus 537 ~~~~~~~~~~~~p--~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e 614 (1513)
.......+.=..- .-..++..|+|+++++++|+|.+++.-.+....-.|+......+.++..|+.|.+|++++|.+..
T Consensus 241 ~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p 320 (580)
T COG4618 241 RNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELP 320 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4433322211111 22446778899999999999999999999999999999999999999999999999999997654
Q ss_pred cccccccccCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEEC
Q 000432 615 IQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKIS 694 (1513)
Q Consensus 615 ~~~~~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~ 694 (1513)
.... ..+-+.+++.+.++++++.= ++.++|+|+||||++++|+-++|+||||||||||.++|.|-.+|.+|+|++|
T Consensus 321 ~~~~---~m~LP~P~g~L~Ve~l~~~P-Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLD 396 (580)
T COG4618 321 AAAE---RMPLPAPQGALSVERLTAAP-PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLD 396 (580)
T ss_pred cccC---CCCCCCCCceeeEeeeeecC-CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEec
Confidence 3322 23334566789999999965 4556899999999999999999999999999999999999999999999999
Q ss_pred C-------------eEEEEcCCCcccCccHHHHHc-cCCCCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChH
Q 000432 695 G-------------TKAYVPQSPWILTGNIRENIL-FGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGG 760 (1513)
Q Consensus 695 g-------------~~ayv~Q~~~l~~~ti~eNI~-fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGG 760 (1513)
| .+||.||+..||.|||+|||. |+.+.|+++.-++.++++.++-+-.||+||||.|||.|.+||||
T Consensus 397 ga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgG 476 (580)
T COG4618 397 GADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGG 476 (580)
T ss_pred chhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCch
Confidence 8 479999999999999999995 99888888887888888888888999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhh-hcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecCh
Q 000432 761 QKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMG-ILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRF 839 (1513)
Q Consensus 761 QkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~-~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~ 839 (1513)
|||||+||||+|.||.+++||||-|+||.+-+..+.+ ++.. ..+|.|+|+||||++.+..+|+|++|+||++...|+-
T Consensus 477 QRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~-Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r 555 (580)
T COG4618 477 QRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAA-AILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPR 555 (580)
T ss_pred HHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHH-HHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCH
Confidence 9999999999999999999999999999998777764 5544 4579999999999999999999999999999999999
Q ss_pred HHHHhc
Q 000432 840 EELLKQ 845 (1513)
Q Consensus 840 ~~l~~~ 845 (1513)
+|.+++
T Consensus 556 ~eVLa~ 561 (580)
T COG4618 556 EEVLAK 561 (580)
T ss_pred HHHHHH
Confidence 998764
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-59 Score=596.89 Aligned_cols=527 Identities=13% Similarity=0.064 Sum_probs=419.8
Q ss_pred hHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchh----hHHHHHHHHHHHHHHHHHH
Q 000432 927 KEVYWSYLTAVKG---GALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGM----NIVLLVYTLLTVGSSLCVL 999 (1513)
Q Consensus 927 ~~~~~~y~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~vy~~l~~~~~~~~~ 999 (1513)
++.+++|+++.+. +..+.+.+++.++..++.+..+++++...|.....+ .... ..++++++++.++..+..+
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~-~~~f~~~l~~~~l~~~~~~~~~~~~~~ 157 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRS-PRNFAWILFKWFLIAPPASFINSAIKY 157 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667765544 223445555666777888888998886665432111 1111 2233344445556666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000432 1000 LRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQ- 1078 (1513)
Q Consensus 1000 ~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~- 1078 (1513)
+..++......+..+++|++.+++....++.|||+ ++|++++|+++|++.+...+...+..++..++.+++.+++++.
T Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~ 236 (659)
T TIGR00954 158 LLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTA 236 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777788888999999999999999999999997 8899999999999999999999999999999999988887776
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHH
Q 000432 1079 VAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWF 1158 (1513)
Q Consensus 1079 ~~~~l~lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~ 1158 (1513)
.+|.++++++...++..++.+++.+..+++.+..+...+...+.+.|.++|+++||+|+.|+.+.+++.+..++..+...
T Consensus 237 ~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~ 316 (659)
T TIGR00954 237 LGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLN 316 (659)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 89998888777777778888888888888988888999999999999999999999999999988888888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHH-HH-H-HHhc----CCccCHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 000432 1159 HNVSAMEWLCFRLNLLSNFV-FAFSL-VV-L-VTLP----EGIINPSIA-GLAVTY---GINLNVLQASIIWNICNAENK 1226 (1513)
Q Consensus 1159 ~~~~~~~wl~~~l~~~~~~~-~~~~~-~~-~-~~~~----~g~i~~g~~-g~~l~y---~~~l~~~l~~~~~~~~~le~~ 1226 (1513)
.......++....+++.... ..+.. +. . +... .|.++.|.. +.+++| ..++..++..++..+.+++..
T Consensus 317 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~ 396 (659)
T TIGR00954 317 LIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRL 396 (659)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766666665421 11111 11 1 2221 267887764 335555 456688888899999999999
Q ss_pred HHHHHHHHHhcCCCCCCC-------Cccc--CC-----CCC-----C-CCCCCceEEEEEEEEEEcCCCCcceeeeeEEe
Q 000432 1227 MISVERILQYSNLPSEAP-------LVTE--EC-----RPP-----S-NWPDVGTISFHNLQIRYAEHLPSVLKNISCTF 1286 (1513)
Q Consensus 1227 ~~sveRi~e~~~~~~e~~-------~~~~--~~-----~~~-----~-~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I 1286 (1513)
..+.+|+.++++.++|.. ...+ +. .++ . .....+.|+++||+++|+++ +++|+|+||+|
T Consensus 397 ~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i 475 (659)
T TIGR00954 397 AGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEV 475 (659)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEE
Confidence 999999999987543211 0000 00 000 0 00134679999999999644 36999999999
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEcCCCccccCcHhhccCCC------
Q 000432 1287 PGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPL------ 1360 (1513)
Q Consensus 1287 ~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~------ 1360 (1513)
++||++||+|+||||||||+++|.|+++|++|+|.+|+ |+++++|||+|.+|++|+||||...
T Consensus 476 ~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 544 (659)
T TIGR00954 476 PSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDM 544 (659)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhh
Confidence 99999999999999999999999999999999999874 6789999999999999999999742
Q ss_pred --CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 000432 1361 --VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQ 1438 (1513)
Q Consensus 1361 --~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq 1438 (1513)
.+.++++++++++.+++++++.+ |.|+||..+ .+.+||||||||++||||++++|++||||||||+||+++++.++
T Consensus 545 ~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~ 622 (659)
T TIGR00954 545 KRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMY 622 (659)
T ss_pred hccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence 24678999999999999999877 999999976 56799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEeccChhhHhhcCEEEEEeC
Q 000432 1439 KIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSD 1471 (1513)
Q Consensus 1439 ~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~ 1471 (1513)
+.+++. ++|+|+||||++++..||+|++|+.
T Consensus 623 ~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 623 RLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999874 8999999999999999999999973
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-59 Score=631.47 Aligned_cols=212 Identities=21% Similarity=0.288 Sum_probs=178.8
Q ss_pred eEEEEEEEEEEcC-----------CCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC--CCcEEEEcCeeC
Q 000432 1261 TISFHNLQIRYAE-----------HLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP--TMGSIIIDNVDI 1327 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~-----------~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep--~~G~I~IDGvdI 1327 (1513)
.+.|+||++..+. +...+|+|||++++|||.+||+|+||||||||+++|.|..++ .+|+|.+||.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6999999998742 123599999999999999999999999999999999999763 789999999886
Q ss_pred CCCChHHhhhceEEEcCCCcccc-CcHhhccCCC------CCCCHH----HHHHHHHHcCCcHHHHhhhccccchhccCC
Q 000432 1328 TKIGLHDLRSRLGIIPQDPTLFD-GTVRGNLDPL------VQYSDK----QVWEALDKCQLGDLVRAKEEKLDSTVAENG 1396 (1513)
Q Consensus 1328 ~~i~l~~LR~~isiVpQdp~LF~-gTIR~NLdp~------~~~sde----ei~~aL~~~~l~~~I~~lp~gLdt~V~e~G 1396 (1513)
.+ ...|+.++||+|++.++. .|++|||.+. .+.+++ .+.++++..+|.+. .|+.+|..+
T Consensus 947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 43 457788999999998876 5999999631 123333 36678888887643 467777544
Q ss_pred -CCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhh-H-hhcCEEEEEeC-
Q 000432 1397 -ENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHT-V-IDSDLVLVLSD- 1471 (1513)
Q Consensus 1397 -~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVLd~- 1471 (1513)
..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|++.. +++|||+++|+++. + ..||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6799999999999999999999999999999999999999999998864 47999999999984 4 56999999996
Q ss_pred CEEeEecChhH
Q 000432 1472 GRIAEYDSPTK 1482 (1513)
Q Consensus 1472 G~IvE~Gtp~e 1482 (1513)
|+++.+|++.+
T Consensus 1097 G~~v~~G~~~~ 1107 (1470)
T PLN03140 1097 GQVIYSGPLGR 1107 (1470)
T ss_pred CEEEEECCccc
Confidence 89999998753
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-59 Score=598.79 Aligned_cols=200 Identities=22% Similarity=0.338 Sum_probs=167.2
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+ |.++ +|+
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 5999999999964 35999999999999999999999999999999999999999999999 4332 699
Q ss_pred EEcCCC-ccccC-cHhhccCCC-CCC--C--HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1341 IIPQDP-TLFDG-TVRGNLDPL-VQY--S--DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1341 iVpQdp-~LF~g-TIR~NLdp~-~~~--s--deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
|+||++ .++.. |+++|+... ... + +.++.+.++..++.+. ..+.++ ..||||||||++||||+
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~----~~LSgGekqRl~la~al 455 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPK------RAMTPV----KALSGGERNRLLLARLF 455 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHH------HHhChh----hhCCHHHHHHHHHHHHH
Confidence 999986 46654 999999642 111 2 4456677777766421 123333 46999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEe-CCEEeEe-cChhHHHh
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLS-DGRIAEY-DSPTKLLE 1485 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd-~G~IvE~-Gtp~eLl~ 1485 (1513)
+++|++|||||||++||..+...+.+.|++. +.|||+|||+.+.+.. ||+|++|+ +|+|+++ |++++-++
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 9999999999999999999999999999875 5699999999999876 99999998 8999986 67777644
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-58 Score=591.20 Aligned_cols=199 Identities=20% Similarity=0.281 Sum_probs=166.9
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhce
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~i 1339 (1513)
..|+++||+++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+++ +.++
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 469999999999643 3599999999999999999999999999999999999999999999876 3579
Q ss_pred EEEcCCCccccCcHhhccC-----CCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHc
Q 000432 1340 GIIPQDPTLFDGTVRGNLD-----PLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLL 1414 (1513)
Q Consensus 1340 siVpQdp~LF~gTIR~NLd-----p~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALL 1414 (1513)
+|+||++. ..-++.+|.. .....+++++.++|+..++.+... + .....||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~------~----~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------L----QPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh------c----CCccccCHHHHHHHHHHHHHh
Confidence 99999973 2234555531 122356788899999998863221 1 224579999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEe-EecChhHH
Q 000432 1415 KKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIA-EYDSPTKL 1483 (1513)
Q Consensus 1415 r~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~Iv-E~Gtp~eL 1483 (1513)
++|++|||||||++||..+...+.+.+++. + .|||+|+|+++.+.. ||+|++|++|+++ ..|++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999999999988764 4 499999999999986 9999999999998 56777664
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-58 Score=520.14 Aligned_cols=470 Identities=23% Similarity=0.279 Sum_probs=373.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 382 QLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYS-NYMFMLPVQISLAIYILRTNLGLGSLA 460 (1513)
Q Consensus 382 ~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~-~~~~~~pl~i~~~l~~L~~~lg~~~l~ 460 (1513)
..+......+.-..|.+.+.|+..++.++.+|.+.--+..-...|+...+++ ..+....+++.+...+++...||...+
T Consensus 8 ~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~ 87 (497)
T COG5265 8 PVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFAL 87 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHH
Confidence 3455555666778899999999999888888887766666666677666654 334455678888888888888876554
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 461 ALAATLTVM-TCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSA 539 (1513)
Q Consensus 461 ~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~ 539 (1513)
..++.++++ .+..........++++..++-.+-.....+.|-|..++|.|+-|+.+..+..+..+.-.+...|......
T Consensus 88 ~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~ 167 (497)
T COG5265 88 TTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLL 167 (497)
T ss_pred HHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHH
Confidence 444444433 3333344444444444443333344567899999999999999999888877655443333222221111
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 000432 540 TSAFI--FWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQR 617 (1513)
Q Consensus 540 ~~~~~--~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~ 617 (1513)
+..+. ...+..+....+.+...+..+.+|.|.+....++..++..|+..+...+..+.++++..+++.+.+..+-...
T Consensus 168 ~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~ 247 (497)
T COG5265 168 VLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVS 247 (497)
T ss_pred HHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhc
Confidence 11111 0111122333344445556789999999999999999999999999999999999999999999997664433
Q ss_pred ccccccCCC-CCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe
Q 000432 618 DAVEYVPKG-RSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT 696 (1513)
Q Consensus 618 ~~~~~~~~~-~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~ 696 (1513)
+.....+-. ...+.|.|+|++|.|++. +|+|+++||++++|+++||||++|+||||++++|.++|++.+|.|.++|+
T Consensus 248 d~pda~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~q 325 (497)
T COG5265 248 DAPDAPPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQ 325 (497)
T ss_pred cCCCCccccccccceEEEEEEEeecccc--chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcch
Confidence 322211111 345679999999999864 79999999999999999999999999999999999999999999999995
Q ss_pred -------------EEEEcCCCcccCccHHHHHccCCCC-CchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHH
Q 000432 697 -------------KAYVPQSPWILTGNIRENILFGNQY-DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQK 762 (1513)
Q Consensus 697 -------------~ayv~Q~~~l~~~ti~eNI~fg~~~-~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQk 762 (1513)
+|.|||+.-|||+|+..||.+|+|. .+++...+.+++++.+.++.+|+|++|.|||+|-.||||+|
T Consensus 326 dir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggek 405 (497)
T COG5265 326 DIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEK 405 (497)
T ss_pred hHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchH
Confidence 5999999999999999999999986 45667788899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHH
Q 000432 763 QRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEEL 842 (1513)
Q Consensus 763 qRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l 842 (1513)
|||++||+++++|+|++|||+|||||.||++.| +..++...+|+|.++|+||++++-.||+|+||+||+|+|.|+|+||
T Consensus 406 qrvaiar~ilk~p~il~~deatsaldt~te~~i-q~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~l 484 (497)
T COG5265 406 QRVAIARTILKNPPILILDEATSALDTHTEQAI-QAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEEL 484 (497)
T ss_pred HHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHH-HHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHH
Confidence 999999999999999999999999999998877 6778888899999999999999999999999999999999999999
Q ss_pred HhcCccHHHHHH
Q 000432 843 LKQNIGFEVLVG 854 (1513)
Q Consensus 843 ~~~~~~~~~l~~ 854 (1513)
++.+|.|+++|.
T Consensus 485 l~~~g~ya~mw~ 496 (497)
T COG5265 485 LAAGGLYAEMWR 496 (497)
T ss_pred HHcCChHHHHhc
Confidence 999999999873
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-56 Score=561.86 Aligned_cols=508 Identities=15% Similarity=0.146 Sum_probs=357.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 304 IYKAIFFFIRKKAAINASFAVINAATSYV-GPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQ 382 (1513)
Q Consensus 304 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~ 382 (1513)
+++.+++.+++.++...++.++..++..+ .|++.+.++|.+.. .. ...+.+++.+++..+ ......+...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~--~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~ 74 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT--SL--LVLPEFLGLLLLLMA----VTLGSQLALTT 74 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cc--hHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 56778888888888888888888888877 47787888886532 11 111111111122212 22233444567
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 383 LGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMFMLPVQISLAIYILRTNLGLGSLAAL 462 (1513)
Q Consensus 383 ~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~~~l~~L~~~lg~~~l~~l 462 (1513)
++.++...++..+|+|.++++...++++++|+++|++++|++.+..++..+..++...+.+++++++++..-+..+++.+
T Consensus 75 ~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l 154 (547)
T PRK10522 75 LGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTA 154 (547)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 78888888999999999999999999999999999999999999986555555566666666555544433233333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 463 AATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQA--WDTRFLQKLESLRQVECIWLWKSLRLSAT 540 (1513)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~--~E~~f~~~i~~~R~~E~~~~~~~~~~~~~ 540 (1513)
+++++.+.+...+.++.++..++.++..+++.+.++|.++|++++++.. .++.+.+++++..++..+...+.......
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (547)
T PRK10522 155 IWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADTFHLS 234 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHH
Confidence 4444444455666777778888889999999999999999999997432 33345555544333222211111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 000432 541 SAFIFWGSPTFISVVTFGACMLLGI---QLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQR 617 (1513)
Q Consensus 541 ~~~~~~~~p~~v~~~~f~~~~~~~~---~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~ 617 (1513)
..... .++..+.++.+++.++ ..+.+.+..+..+...+..|+..+...+..+.+++++.+|+.++++.++.++
T Consensus 235 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~ 310 (547)
T PRK10522 235 AVNWS----NIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAE 310 (547)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 11111 1111112222222221 1223333333333344678999999999999999999999999986544221
Q ss_pred ccccccCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-
Q 000432 618 DAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT- 696 (1513)
Q Consensus 618 ~~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~- 696 (1513)
.. +..+. +....++++|++|+|++ ++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 311 ~~-~~~~~-~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 386 (547)
T PRK10522 311 FP-RPQAF-PDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP 386 (547)
T ss_pred cc-ccccc-CcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 11 11111 11247999999999973 347999999999999999999999999999999999999999999999884
Q ss_pred ------------EEEEcCCCcccCccHHHHHccCCCCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHH
Q 000432 697 ------------KAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQR 764 (1513)
Q Consensus 697 ------------~ayv~Q~~~l~~~ti~eNI~fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqR 764 (1513)
++||+|+|++|++|++|| +.+.++++.++.++.+++..+++. ++|. .+|.+||||||||
T Consensus 387 ~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qR 457 (547)
T PRK10522 387 VTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKR 457 (547)
T ss_pred CCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHH
Confidence 599999999999999999 444555566666666665554432 2221 1489999999999
Q ss_pred HHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccccCCEEEEEeCCeEEEe
Q 000432 765 IQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPAADIILVMENGRIAQA 836 (1513)
Q Consensus 765 i~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~ 836 (1513)
++||||++++|+++|||||||+||+++++.+.+...+... +++|+|+||||++.+..||+|++|++|++++.
T Consensus 458 l~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 458 LALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999998888654433222 48999999999999999999999999999876
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-56 Score=547.02 Aligned_cols=485 Identities=22% Similarity=0.345 Sum_probs=344.8
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC--eEEEEcCCCcccC
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--TKAYVPQSPWILT 708 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g--~~ayv~Q~~~l~~ 708 (1513)
.|.++|++++|+ ++++|+|+|+++.+|++++|||+||+||||||++|.|+..|++|+|...+ +++|++|++....
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 488999999995 36899999999999999999999999999999999999999999999987 7999999999986
Q ss_pred c-cHHHHHccCCCCC---chHHHHHHHH---------Hhc------------HHHHhhcc--CCCCccccCCCCCCChHH
Q 000432 709 G-NIRENILFGNQYD---SCKYDRTVEA---------CAL------------VKDFELFA--SGDLTEIGERGINMSGGQ 761 (1513)
Q Consensus 709 ~-ti~eNI~fg~~~~---~~~~~~v~~~---------~~l------------~~d~~~l~--~Gd~T~Ige~g~~LSGGQ 761 (1513)
. ||.|.+.-|...- ..+|++.... ..+ +.+++..- -|...+ ...-.+|||||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~ 158 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGW 158 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHH
Confidence 5 9999999875311 1112221110 000 01111111 122222 23345799999
Q ss_pred HHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCeE-EEecCh
Q 000432 762 KQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGRI-AQAGRF 839 (1513)
Q Consensus 762 kqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i-~~~g~~ 839 (1513)
|.||+|||||..+||+|||||||++||.++.+.+ ++.+.. .+| |+|+|||+.+||.. |++|+.+++|++ .+.|+|
T Consensus 159 r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WL-e~~L~~-~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 159 RRRVALARALLEEPDLLLLDEPTNHLDLESIEWL-EDYLKR-YPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNY 235 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHH-HHHHHh-CCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCH
Confidence 9999999999999999999999999999986665 445543 356 99999999999987 999999999988 688999
Q ss_pred HHHHhcCccHHHHHHhhhhhhhhhcccccCCCCCCCCCCCCccCcCccccccccccCCCccchhhhhhhhcCCCchhhhH
Q 000432 840 EELLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGGKLVQEEE 919 (1513)
Q Consensus 840 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 919 (1513)
+.+++.+..-.+.... .. ++ ++++
T Consensus 236 ~~~~~~r~~~~~~~~~--------------------------------------------------~~-~~-----~~~~ 259 (530)
T COG0488 236 SSYLEQKAERLRQEAA--------------------------------------------------AY-EK-----QQKE 259 (530)
T ss_pred HHHHHHHHHHHHHHHH--------------------------------------------------HH-HH-----HHHH
Confidence 8887643210000000 00 00 0000
Q ss_pred hhhcccchHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 000432 920 REKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVL 999 (1513)
Q Consensus 920 ~~~g~v~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~ 999 (1513)
.+ ....++..
T Consensus 260 ~~-------~~~~~i~r--------------------------------------------------------------- 269 (530)
T COG0488 260 LA-------KEQEWIRR--------------------------------------------------------------- 269 (530)
T ss_pred HH-------HHHHHHHH---------------------------------------------------------------
Confidence 00 00000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1000 LRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQV 1079 (1513)
Q Consensus 1000 ~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~ 1079 (1513)
+..
T Consensus 270 --------------------------------------------~~~--------------------------------- 272 (530)
T COG0488 270 --------------------------------------------GKA--------------------------------- 272 (530)
T ss_pred --------------------------------------------HHh---------------------------------
Confidence 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHH
Q 000432 1080 AWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFH 1159 (1513)
Q Consensus 1080 ~~~l~lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~ 1159 (1513)
...++++
T Consensus 273 ---------------------~~~~~k~---------------------------------------------------- 279 (530)
T COG0488 273 ---------------------AASKAKK---------------------------------------------------- 279 (530)
T ss_pred ---------------------ccchHHH----------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c
Q 000432 1160 NVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQY--S 1237 (1513)
Q Consensus 1160 ~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~--~ 1237 (1513)
.+..+...+|+.+- .
T Consensus 280 ---------------------------------------------------------------a~sr~k~l~k~~~~~~~ 296 (530)
T COG0488 280 ---------------------------------------------------------------AKSRIKRLEKLEARLAE 296 (530)
T ss_pred ---------------------------------------------------------------HHHHHHHHHHHHhhhhh
Confidence 00000111111110 0
Q ss_pred CCCCCCCCcc-cCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Q 000432 1238 NLPSEAPLVT-EECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPT 1316 (1513)
Q Consensus 1238 ~~~~e~~~~~-~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~ 1316 (1513)
..|.+..... -...+++.-..+-.++++|+++.|.++ .++++++||.|++|++||||||+|+|||||+++|.|-..|.
T Consensus 297 ~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~ 375 (530)
T COG0488 297 ERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL 375 (530)
T ss_pred cccccccccceeeccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC
Confidence 0011100000 000111111123479999999999766 56999999999999999999999999999999999999999
Q ss_pred CcEEEEcCeeCCCCChHHhhhceEEEcCCC-ccc-cCcHhhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhhccccchhc
Q 000432 1317 MGSIIIDNVDITKIGLHDLRSRLGIIPQDP-TLF-DGTVRGNLDPLV-QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVA 1393 (1513)
Q Consensus 1317 ~G~I~IDGvdI~~i~l~~LR~~isiVpQdp-~LF-~gTIR~NLdp~~-~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~ 1393 (1513)
+|+|.+.- .-++||.+|+- .++ +.|+-+++.... +..+.++...|.+.++...- ..++|
T Consensus 376 ~G~v~~g~-----------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~------~~~~v- 437 (530)
T COG0488 376 SGTVKVGE-----------TVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGED------QEKPV- 437 (530)
T ss_pred CceEEeCC-----------ceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHH------HhCch-
Confidence 99998754 13699999998 444 338888886433 44488999999999986432 23444
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCC
Q 000432 1394 ENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDG 1472 (1513)
Q Consensus 1394 e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G 1472 (1513)
..||||||-|+.||+.++.+|.+|||||||.+||.+|-..+.++|.+ |+| |||+|+|+...+.. |++|+++++
T Consensus 438 ---~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~-f~G-tvl~VSHDr~Fl~~va~~i~~~~~- 511 (530)
T COG0488 438 ---GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD-FEG-TVLLVSHDRYFLDRVATRIWLVED- 511 (530)
T ss_pred ---hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh-CCC-eEEEEeCCHHHHHhhcceEEEEcC-
Confidence 46999999999999999999999999999999999999999999975 555 99999999999988 999999999
Q ss_pred EEeEe-cChhHHHhc
Q 000432 1473 RIAEY-DSPTKLLER 1486 (1513)
Q Consensus 1473 ~IvE~-Gtp~eLl~~ 1486 (1513)
++.++ |++++-.+.
T Consensus 512 ~~~~~~g~y~~y~~~ 526 (530)
T COG0488 512 KVEEFEGGYEDYLEQ 526 (530)
T ss_pred ceeEcCCCHHHHHHh
Confidence 88888 888887765
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-57 Score=569.00 Aligned_cols=192 Identities=21% Similarity=0.310 Sum_probs=163.9
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.++++|++++|++ ..|+++||+|++||.+||+|++|||||||+++|.|+.+|++|+|.++ .+++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 5999999999964 25999999999999999999999999999999999999999999986 1599
Q ss_pred EEcCCCcc-ccCcHhhccCCC-CCC-CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCC
Q 000432 1341 IIPQDPTL-FDGTVRGNLDPL-VQY-SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKS 1417 (1513)
Q Consensus 1341 iVpQdp~L-F~gTIR~NLdp~-~~~-sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~ 1417 (1513)
|+||++.+ ++.|+++|+... ..+ .++.+.++++..++.+.. |.+ ..+||||||||++|||||+++|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~-------~~~----~~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLL-------DKN----VKDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHH-------hCC----cccCCHHHHHHHHHHHHHhcCC
Confidence 99999875 467999999642 122 234567788888876543 333 3469999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecCh
Q 000432 1418 SILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSP 1480 (1513)
Q Consensus 1418 ~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp 1480 (1513)
+||||||||++||.++...+.+.|++..+ ++|+|+|+|+++.+.. ||||++|++ ++...|+.
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeec
Confidence 99999999999999999999999998643 7899999999999876 999999965 88777763
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-53 Score=543.23 Aligned_cols=504 Identities=16% Similarity=0.156 Sum_probs=370.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 315 KAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLES-GYLLALAFLGAKMVETIAQRQWIFGARQLGLRLRAALIS 393 (1513)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~-g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~ 393 (1513)
.++..+++.++.+++....|++.+.++|.+..++...+.. .+.+++++++..++.++... ...++..++|..+..
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~----~~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKY----LLKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4667778888899999999999999999886543211111 22233333333444444333 344455555555555
Q ss_pred HHHHHHhc----CCcccccCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000432 394 HLYRKGLH----LSSQSRQSHTSGEIINYMSVDVQRISDFIFY-SNYMFMLPVQISLAIYILRTNLGLGS-LAALAATLT 467 (1513)
Q Consensus 394 ~iy~K~L~----l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~l~~L~~~lg~~~-l~~l~~~~~ 467 (1513)
.++++.++ .+..++++ ++|++++++++|++.+.+.+.. +..+...++.++.+++.++..++|.. ++.++..++
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 55555544 33334443 5799999999999999988764 34445556666666666776566533 333444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 468 VMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFWG 547 (1513)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~R~~E~~~~~~~~~~~~~~~~~~~~ 547 (1513)
.+.+...+.+..++..++.++..++-....+|.++|+++||.|+-|+.+.+++++.-++..+...+.....+....+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55566777888888888889999999999999999999999999999988888776655555555555544443332221
Q ss_pred H----HHHHHHHHHHHHHHh-c----ccccHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000432 548 S----PTFISVVTFGACMLL-G----IQLTAGRVLS-ALA---TFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDE 614 (1513)
Q Consensus 548 ~----p~~v~~~~f~~~~~~-~----~~Lt~~~~ft-~l~---l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e 614 (1513)
. ...+..+..+..++. . +.+|.|..+. +++ ++..+..|+..+.+.+..++++.++.+|+.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122222223332332 2 5788887655 333 4667799999999999999999999999999997533
Q ss_pred cccc------cccc-----------------cCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCC
Q 000432 615 IQRD------AVEY-----------------VPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGS 671 (1513)
Q Consensus 615 ~~~~------~~~~-----------------~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~Gs 671 (1513)
...+ .... .........|+++|++|+|++ ++++|+|+||+|++||+++|+|||||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGs 489 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGC 489 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceEEECCCCEEEEECCCCC
Confidence 2110 0000 000012346999999999963 24799999999999999999999999
Q ss_pred cHHHHHHHHhcCccCCCcEEEECC--eEEEEcCCCcccCccHHHHHccCCC--------CCchHHHHHHHHHhcHHHHhh
Q 000432 672 GKSSLLSCILGEIQKMAGTVKISG--TKAYVPQSPWILTGNIRENILFGNQ--------YDSCKYDRTVEACALVKDFEL 741 (1513)
Q Consensus 672 GKStLl~~llg~~~~~~G~i~~~g--~~ayv~Q~~~l~~~ti~eNI~fg~~--------~~~~~~~~v~~~~~l~~d~~~ 741 (1513)
|||||+++|+|+++|.+|+|.+++ .++||||+|+++++|++|||.++.. .++++.+++++.+++.+.++.
T Consensus 490 GKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 569 (659)
T TIGR00954 490 GKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569 (659)
T ss_pred CHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh
Confidence 999999999999999999999875 6899999999999999999999742 344566788888888877776
Q ss_pred ccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc
Q 000432 742 FASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA 821 (1513)
Q Consensus 742 l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~ 821 (1513)
|.|++|..+ .+.+||||||||++||||++++|+++|||||||+||+++++.+.+ .++. .++|+|+||||++.++.
T Consensus 570 -~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~-~l~~--~~~tvI~isH~~~~~~~ 644 (659)
T TIGR00954 570 -EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYR-LCRE--FGITLFSVSHRKSLWKY 644 (659)
T ss_pred -cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHH--cCCEEEEEeCchHHHHh
Confidence 999999876 567999999999999999999999999999999999999888765 4444 38999999999999999
Q ss_pred CCEEEEEeC
Q 000432 822 ADIILVMEN 830 (1513)
Q Consensus 822 ~d~i~vl~~ 830 (1513)
||+|++|++
T Consensus 645 ~d~il~l~~ 653 (659)
T TIGR00954 645 HEYLLYMDG 653 (659)
T ss_pred CCEEEEEeC
Confidence 999999973
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=509.33 Aligned_cols=443 Identities=24% Similarity=0.373 Sum_probs=334.1
Q ss_pred ceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------- 696 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------------- 696 (1513)
.-++++|++.+|+. .++|+|+||++.+||++|++|+||+|||||+|.|.|.|+|++|+|.++|.
T Consensus 7 ~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 7 PLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 35889999999974 58999999999999999999999999999999999999999999999995
Q ss_pred -EEEEcCCCccc-CccHHHHHccCCCCCc-------hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 000432 697 -KAYVPQSPWIL-TGNIRENILFGNQYDS-------CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQI 767 (1513)
Q Consensus 697 -~ayv~Q~~~l~-~~ti~eNI~fg~~~~~-------~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~l 767 (1513)
|+.|.|+.-|+ +-||.|||-+|++... .+.++ ++..+.+.+.. +..-++ .-.+||+||||-|+|
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~--~A~~~l~~lg~-~~~~~~----~v~~LsiaqrQ~VeI 156 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRR--RARELLARLGL-DIDPDT----LVGDLSIAQRQMVEI 156 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHH--HHHHHHHHcCC-CCChhh----hhhhCCHHHHHHHHH
Confidence 58999999888 4599999999876432 22221 22222222211 111233 445799999999999
Q ss_pred HHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecCh-HHHHh
Q 000432 768 ARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRF-EELLK 844 (1513)
Q Consensus 768 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~-~~l~~ 844 (1513)
|||++.+++|+|||||||+|+.+..+++|+ .++.+. +|.++|+|||+++.+. -||+|.||+||+.+..++. .++
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~-~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~-- 233 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFD-LIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET-- 233 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCC--
Confidence 999999999999999999999999999986 455554 6999999999998865 5999999999998864331 000
Q ss_pred cCccHHHHHHhhhhhhhhhcccccCCCCCCCCCCCCccCcCccccccccccCCCccchhhhhhhhcCCCchhhhHhhhcc
Q 000432 845 QNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGGKLVQEEEREKGS 924 (1513)
Q Consensus 845 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~ 924 (1513)
+ . ++
T Consensus 234 -----------------------------------------------------------~-~----------~~------ 237 (500)
T COG1129 234 -----------------------------------------------------------S-E----------DE------ 237 (500)
T ss_pred -----------------------------------------------------------C-H----------HH------
Confidence 0 0 00
Q ss_pred cchHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 925 IGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAML 1004 (1513)
Q Consensus 925 v~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~ 1004 (1513)
.++..
T Consensus 238 --------lv~~M------------------------------------------------------------------- 242 (500)
T COG1129 238 --------LVRLM------------------------------------------------------------------- 242 (500)
T ss_pred --------HHHHh-------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000432 1005 VAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVF 1084 (1513)
Q Consensus 1005 ~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~ 1084 (1513)
+||
T Consensus 243 --------------------------------vGr--------------------------------------------- 245 (500)
T COG1129 243 --------------------------------VGR--------------------------------------------- 245 (500)
T ss_pred --------------------------------hCc---------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHH
Q 000432 1085 VIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAM 1164 (1513)
Q Consensus 1085 lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~ 1164 (1513)
T Consensus 246 -------------------------------------------------------------------------------- 245 (500)
T COG1129 246 -------------------------------------------------------------------------------- 245 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000432 1165 EWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAP 1244 (1513)
Q Consensus 1165 ~wl~~~l~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~ 1244 (1513)
+..+..++ +
T Consensus 246 ----------------------------------------------------------------------~~~~~~~~-~ 254 (500)
T COG1129 246 ----------------------------------------------------------------------ELEDLFPE-P 254 (500)
T ss_pred ----------------------------------------------------------------------chhhhccc-c
Confidence 00000000 0
Q ss_pred CcccCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcC
Q 000432 1245 LVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN 1324 (1513)
Q Consensus 1245 ~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDG 1324 (1513)
. .. -+..-.++++|++.. ..++|+||++++||.+||.|--|||+|-++++|||.-++.+|+|.+||
T Consensus 255 -~-~~------~~~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G 320 (500)
T COG1129 255 -P-EE------GIGEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDG 320 (500)
T ss_pred -c-cc------CCCCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECC
Confidence 0 00 011124677777643 158999999999999999999999999999999999999999999999
Q ss_pred eeCCCCChH-HhhhceEEEcCCCc---cc-cCcHhhccCCC--CCCCHH-HHHHHHHHcCCcHHHHhhh---ccccchhc
Q 000432 1325 VDITKIGLH-DLRSRLGIIPQDPT---LF-DGTVRGNLDPL--VQYSDK-QVWEALDKCQLGDLVRAKE---EKLDSTVA 1393 (1513)
Q Consensus 1325 vdI~~i~l~-~LR~~isiVpQdp~---LF-~gTIR~NLdp~--~~~sde-ei~~aL~~~~l~~~I~~lp---~gLdt~V~ 1393 (1513)
.++.--+++ ..+..|+|||-|-- || .-+|++|+... ..++.. -+...-++.-..++++++. ...+.++
T Consensus 321 ~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v- 399 (500)
T COG1129 321 KPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI- 399 (500)
T ss_pred EEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh-
Confidence 988877766 58889999998874 44 56999999632 111100 1223333333444555442 2334444
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHh-hcCEEEEEeC
Q 000432 1394 ENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVI-DSDLVLVLSD 1471 (1513)
Q Consensus 1394 e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~-~~DrIlVLd~ 1471 (1513)
.+||||.+|+++|||.|..+|+||||||||.++|..+.+.|.+.|++.. +|.+||+|+-.++.+. .||||+||.+
T Consensus 400 ---~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~ 476 (500)
T COG1129 400 ---GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMRE 476 (500)
T ss_pred ---hcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEEC
Confidence 4799999999999999999999999999999999999999999999876 5799999999999988 5999999999
Q ss_pred CEEeEecChhH
Q 000432 1472 GRIAEYDSPTK 1482 (1513)
Q Consensus 1472 G~IvE~Gtp~e 1482 (1513)
|+|+..=+.++
T Consensus 477 Gri~~e~~~~~ 487 (500)
T COG1129 477 GRIVGELDREE 487 (500)
T ss_pred CEEEEEecccc
Confidence 99997444333
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-55 Score=501.11 Aligned_cols=239 Identities=38% Similarity=0.644 Sum_probs=230.1
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhce
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~i 1339 (1513)
|.|+|+||+++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.|||+|+.+++.+++|+++
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 5799999999998666679999999999999999999999999999999999998 799999999999999999999999
Q ss_pred EEEcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCE
Q 000432 1340 GIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSI 1419 (1513)
Q Consensus 1340 siVpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~I 1419 (1513)
+||||+|.+|++|+++|+++++..+++++|++++.+++.+++.++|++||+.++|+|.+||||||||+|||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998877889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhcCChHHHHHHHHHh
Q 000432 1420 LVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYS 1499 (1513)
Q Consensus 1420 LiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~~~~~ 1499 (1513)
|||||||++||+++++.+++.|++.+++||+|+||||++++..||||+||++|+++|+|+|++|+++ .++|++++++..
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhhcc
Confidence 9999999999999999999999998889999999999999999999999999999999999999996 699999998776
Q ss_pred h
Q 000432 1500 M 1500 (1513)
Q Consensus 1500 ~ 1500 (1513)
.
T Consensus 239 ~ 239 (275)
T cd03289 239 R 239 (275)
T ss_pred h
Confidence 3
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=475.95 Aligned_cols=443 Identities=22% Similarity=0.394 Sum_probs=336.9
Q ss_pred ceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------- 696 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------------- 696 (1513)
..+++++++..|+ ...+++||||+|++||+.|++|+||+|||||++.|.|.|+|++|+|.++|+
T Consensus 3 ~~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 4689999999997 357899999999999999999999999999999999999999999999995
Q ss_pred -EEEEcCCCcccCc-cHHHHHccCCCCC------chHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHH
Q 000432 697 -KAYVPQSPWILTG-NIRENILFGNQYD------SCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIA 768 (1513)
Q Consensus 697 -~ayv~Q~~~l~~~-ti~eNI~fg~~~~------~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lA 768 (1513)
||+|.|++-|+.. ||.|||..|.+-. ....++-++..+ +. .|..-...++-..||-||||||.|-
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~--~~-----yGl~vdp~~~V~dLsVG~qQRVEIl 152 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELS--ER-----YGLPVDPDAKVADLSVGEQQRVEIL 152 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHH--HH-----hCCCCCccceeecCCcchhHHHHHH
Confidence 5999999999865 9999999998632 111111111111 11 1222222344567999999999999
Q ss_pred HHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 000432 769 RAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI-LKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQN 846 (1513)
Q Consensus 769 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 846 (1513)
+|||++|+++|||||||-|-|...+++|+- ++.+ ..|||||+|||+++.+.. ||++.||++|+++. +++..
T Consensus 153 KaLyr~a~iLILDEPTaVLTP~E~~~lf~~-l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg--t~~~~---- 225 (501)
T COG3845 153 KALYRGARLLILDEPTAVLTPQEADELFEI-LRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG--TVDPV---- 225 (501)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe--eecCC----
Confidence 999999999999999999999999999964 4444 469999999999988765 99999999999763 21100
Q ss_pred ccHHHHHHhhhhhhhhhcccccCCCCCCCCCCCCccCcCccccccccccCCCccchhhhhhhhcCCCchhhhHhhhcccc
Q 000432 847 IGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKGGKLVQEEEREKGSIG 926 (1513)
Q Consensus 847 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~ 926 (1513)
.+ . . .+|-.
T Consensus 226 ---------------------------------~~------------------~---t-----------~~ela------ 234 (501)
T COG3845 226 ---------------------------------AE------------------T---T-----------EEELA------ 234 (501)
T ss_pred ---------------------------------CC------------------C---C-----------HHHHH------
Confidence 00 0 0 00000
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 927 KEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVA 1006 (1513)
Q Consensus 927 ~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~ 1006 (1513)
+ ++
T Consensus 235 --------~---------lM------------------------------------------------------------ 237 (501)
T COG3845 235 --------E---------LM------------------------------------------------------------ 237 (501)
T ss_pred --------H---------Hh------------------------------------------------------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000432 1007 ITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVI 1086 (1513)
Q Consensus 1007 ~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~~~~l~v~~~~~~~l~lv 1086 (1513)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 000432 1087 FIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEW 1166 (1513)
Q Consensus 1087 ~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1166 (1513)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Q 000432 1167 LCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEAPLV 1246 (1513)
Q Consensus 1167 l~~~l~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~~~~e~~~~ 1246 (1513)
+ ...+. .+.+
T Consensus 238 ----------------------v-G~~v~-------------------------------------------~~~~---- 247 (501)
T COG3845 238 ----------------------V-GREVV-------------------------------------------LRVV---- 247 (501)
T ss_pred ----------------------c-CCccc-------------------------------------------cccc----
Confidence 0 00000 0000
Q ss_pred ccCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCee
Q 000432 1247 TEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVD 1326 (1513)
Q Consensus 1247 ~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvd 1326 (1513)
. ++.-|..-.++++|++..=+.+. +.++||||++++||.+||.|=.|-|-+.|+.+|.|+..|.+|+|.++|.|
T Consensus 248 ----~-~~~~pg~~vL~V~~L~v~~~~~~-~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~ 321 (501)
T COG3845 248 ----K-PPSTPGEVVLEVEDLSVKDRRGV-TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKD 321 (501)
T ss_pred ----c-CCCCCCCeEEEEeeeEeecCCCC-ceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEe
Confidence 0 01112234689999999754433 57999999999999999999999999999999999999999999999999
Q ss_pred C-CCCChHHhhh-ceEEEcCCCc----cccCcHhhccCCCCC----------CCHHHHHHHHHHcCCcHHHHhh---hcc
Q 000432 1327 I-TKIGLHDLRS-RLGIIPQDPT----LFDGTVRGNLDPLVQ----------YSDKQVWEALDKCQLGDLVRAK---EEK 1387 (1513)
Q Consensus 1327 I-~~i~l~~LR~-~isiVpQdp~----LF~gTIR~NLdp~~~----------~sdeei~~aL~~~~l~~~I~~l---p~g 1387 (1513)
+ ...+....|. .+++||.|.. ..+-|+.||+-+... .+-.++.+..+ +.+++. +.+
T Consensus 322 v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~fdVr~~~ 396 (501)
T COG3845 322 VLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEEFDVRAPS 396 (501)
T ss_pred ccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHHcCccCCC
Confidence 8 6677777655 6999999984 567799999853211 11223322221 122221 223
Q ss_pred ccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCE
Q 000432 1388 LDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDL 1465 (1513)
Q Consensus 1388 Ldt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~Dr 1465 (1513)
.+++ ..+||||+.|++-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. +|+.|+.|+-.|+.+.. |||
T Consensus 397 ~~~~----a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDr 472 (501)
T COG3845 397 PDAP----ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDR 472 (501)
T ss_pred CCcc----hhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhhe
Confidence 3333 35799999999999999999999999999999999999999999887765 68999999999999887 999
Q ss_pred EEEEeCCEEeEecChhH
Q 000432 1466 VLVLSDGRIAEYDSPTK 1482 (1513)
Q Consensus 1466 IlVLd~G~IvE~Gtp~e 1482 (1513)
|.||.+|+|+....+++
T Consensus 473 IaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 473 IAVIYEGRIVGIVPPEE 489 (501)
T ss_pred eeeeeCCceeccccccc
Confidence 99999999998887776
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=478.19 Aligned_cols=257 Identities=20% Similarity=0.372 Sum_probs=220.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccc------C---CCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEE
Q 000432 1225 NKMISVERILQYSNLPSEAPLVTE------E---CRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVV 1295 (1513)
Q Consensus 1225 ~~~~sveRi~e~~~~~~e~~~~~~------~---~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIV 1295 (1513)
..+.+++|+.+|+..+.|.....+ + ...+..||..+.|+|+|++++|+++.+++|+|+||+|++||++|||
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~Iv 114 (329)
T PRK14257 35 QKLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFI 114 (329)
T ss_pred hccccccchhhHHhcccccchhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEE
Confidence 345667777777666554322111 1 0113469999999999999999765567999999999999999999
Q ss_pred cCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCC--CCChHHhhhceEEEcCCCccccCcHhhccCCC---CCCCH
Q 000432 1296 GRTGSGKSTLIQAIFRIVE-----PTMGSIIIDNVDIT--KIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPL---VQYSD 1365 (1513)
Q Consensus 1296 GrTGSGKSTLl~lL~rl~e-----p~~G~I~IDGvdI~--~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~---~~~sd 1365 (1513)
||||||||||+++|+|+++ |++|+|.|||+|+. ++++.++|++++||||+|.+|++||++||++. ..+++
T Consensus 115 G~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~ 194 (329)
T PRK14257 115 GPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGIND 194 (329)
T ss_pred CCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCCh
Confidence 9999999999999999997 57999999999997 56678899999999999999999999999832 23555
Q ss_pred HHH-----HHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 000432 1366 KQV-----WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKI 1440 (1513)
Q Consensus 1366 eei-----~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~ 1440 (1513)
++. .++++.+++. +++++.++++|.+||||||||+|||||++++|+||+||||||+||+++.+.+++.
T Consensus 195 ~~~~~~~~~~~l~~~~L~-------~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~ 267 (329)
T PRK14257 195 RKILEKIVEKSLKSAALW-------DEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEEL 267 (329)
T ss_pred HHHHHHHHHHHHHHcCCc-------chhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 554 5567777764 3456888999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcCC
Q 000432 1441 ISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERED 1488 (1513)
Q Consensus 1441 i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~~ 1488 (1513)
|++.++++|+|+||||++++.+ ||||+||++|+|+|.|+|+++.+++.
T Consensus 268 i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~~ 316 (329)
T PRK14257 268 ILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPK 316 (329)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCC
Confidence 9999999999999999999998 99999999999999999999988654
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-46 Score=390.85 Aligned_cols=216 Identities=28% Similarity=0.451 Sum_probs=193.9
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCC-CCChHHhhhce
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDIT-KIGLHDLRSRL 1339 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~-~i~l~~LR~~i 1339 (1513)
.|+++||+.+|++. .||||||++|++||.+.|+||||||||||+++|.++-+|++|+|.|||.++. +.++..+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999864 5999999999999999999999999999999999999999999999998774 33788999999
Q ss_pred EEEcCCCccccC-cHhhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHH
Q 000432 1340 GIIPQDPTLFDG-TVRGNLDPL----VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLG 1410 (1513)
Q Consensus 1340 siVpQdp~LF~g-TIR~NLdp~----~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LA 1410 (1513)
|+|+|...||.- |+-+|+... ...+ .+.-.+.|+++||.|.....|. .|||||+||+|||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHHHHH
Confidence 999999999965 999999532 1222 3345678899999998887774 6799999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcCC
Q 000432 1411 RTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERED 1488 (1513)
Q Consensus 1411 RALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~~ 1488 (1513)
|||.-+|+|+++||||||||||.-..+.+.+++.. .|.|.|+|||.+...++ ||||+.||+|+|+|.|+|+++..++.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 99999999999999999999999999999998876 57899999999999998 99999999999999999999998865
Q ss_pred h
Q 000432 1489 S 1489 (1513)
Q Consensus 1489 ~ 1489 (1513)
.
T Consensus 229 ~ 229 (240)
T COG1126 229 S 229 (240)
T ss_pred C
Confidence 3
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=420.25 Aligned_cols=240 Identities=52% Similarity=0.850 Sum_probs=225.1
Q ss_pred CCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhh
Q 000432 1258 DVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337 (1513)
Q Consensus 1258 ~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~ 1337 (1513)
..|.|+++|++++|++....+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46789999999999764346999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCC
Q 000432 1338 RLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKS 1417 (1513)
Q Consensus 1338 ~isiVpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~ 1417 (1513)
+++++||+|.+|++|+++|+++.....+++++++++.+++.+.+..+|.|+++.+++.+.+||+|||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999875445577889999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhcCChHHHHHHHH
Q 000432 1418 SILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKE 1497 (1513)
Q Consensus 1418 ~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~~~ 1497 (1513)
++|+|||||++||+++.+.+.+.+++..+++|+|+++|+++.+..||||++|++|++++.|+++++.+.+++.|+.++..
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 255 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHhc
Confidence 99999999999999999999999998777899999999999999999999999999999999999998877888887754
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=433.32 Aligned_cols=263 Identities=22% Similarity=0.335 Sum_probs=221.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCCcceEEEEeEEEEeCCC
Q 000432 565 IQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPE 644 (1513)
Q Consensus 565 ~~Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~~I~~~~~sf~~~~~ 644 (1513)
+.+++..+|+.+++|+.+..|+..+|..... ..|+.+|+..++.+...... ..+....|+++|++++|+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~nls~~y~~~ 93 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--DFNHANVFEIRNFNFWYMNR 93 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--CCCcCceEEEEeeEEEecCC
Confidence 5789999999999999999999888765443 56999998876643311111 11234679999999999642
Q ss_pred CCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCcc-----CCCcEEEECC---------------eEEEEcCCC
Q 000432 645 SSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQ-----KMAGTVKISG---------------TKAYVPQSP 704 (1513)
Q Consensus 645 ~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~-----~~~G~i~~~g---------------~~ayv~Q~~ 704 (1513)
..++|+|+||+|++||+++|+|++|||||||+++|+|+++ |++|+|.++| .++||||+|
T Consensus 94 -~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~ 172 (329)
T PRK14257 94 -TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172 (329)
T ss_pred -CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 3579999999999999999999999999999999999997 5799998765 369999999
Q ss_pred cccCccHHHHHccCCCCC----ch----HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000432 705 WILTGNIRENILFGNQYD----SC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDAD 776 (1513)
Q Consensus 705 ~l~~~ti~eNI~fg~~~~----~~----~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~ 776 (1513)
|+|++||+|||.|+..++ ++ .++++++.|++.+++ ++.++++|.+|||||||||+||||++++|+
T Consensus 173 ~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l-------~~~~~~~~~~LSgGqkqRl~LARAl~~~p~ 245 (329)
T PRK14257 173 TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV-------KDDLDKAGNALSGGQQQRLCIARAIALEPE 245 (329)
T ss_pred ccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-------hhhhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999875332 22 255666777765443 478899999999999999999999999999
Q ss_pred EEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000432 777 IYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 777 illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
||||||||||||+++.+++ .++++.+.+++|+|+|||+++++.. ||+|++|++|+|++.|+++++...
T Consensus 246 IlLLDEPts~LD~~~~~~i-~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 246 VLLMDEPTSALDPIATAKI-EELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred EEEEeCCcccCCHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999998774 6788888888999999999999887 999999999999999999998754
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=403.52 Aligned_cols=227 Identities=30% Similarity=0.446 Sum_probs=198.1
Q ss_pred EEEEEEEEEEcCC---CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC---hHHh
Q 000432 1262 ISFHNLQIRYAEH---LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG---LHDL 1335 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~---~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~---l~~L 1335 (1513)
|+++||++.|... ...+|+||||+|++||..||||+||||||||++++-++-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999763 346999999999999999999999999999999999999999999999998888766 5556
Q ss_pred hhceEEEcCCCcccc-CcHhhccC-CCC--CCCHH----HHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHH
Q 000432 1336 RSRLGIIPQDPTLFD-GTVRGNLD-PLV--QYSDK----QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLF 1407 (1513)
Q Consensus 1336 R~~isiVpQdp~LF~-gTIR~NLd-p~~--~~sde----ei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl 1407 (1513)
|++||+|+|++-|++ .|+.+|+. |+. ..+.+ ++.+.|+.+||.|...+-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 889999999999997 79999997 332 34443 4667889999888766655 57999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1408 CLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1408 ~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
+|||||..+|+||+.|||||+||++|-+.|.+.|++.- -|-|+++|||-++.|++ ||||.||++|+|+|.|+-.++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999887653 37899999999999998 9999999999999999999999
Q ss_pred hcC-ChHHHHHHHHHh
Q 000432 1485 ERE-DSFFSQLIKEYS 1499 (1513)
Q Consensus 1485 ~~~-~~~f~~l~~~~~ 1499 (1513)
.++ +..-++++.+..
T Consensus 231 ~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 231 ANPKHAITQEFIGETL 246 (339)
T ss_pred cCcchHHHHHHHHhhc
Confidence 887 344555665443
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=407.72 Aligned_cols=234 Identities=34% Similarity=0.534 Sum_probs=217.1
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++|++++|+.+..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57999999997544569999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EcCCCccccCcHhhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEE
Q 000432 1342 IPQDPTLFDGTVRGNLDPLV-QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSIL 1420 (1513)
Q Consensus 1342 VpQdp~LF~gTIR~NLdp~~-~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~IL 1420 (1513)
+||++.+|+.|+++||.... ..+.+++.++++..++.+++..+|.|+++.....+.+||||||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999997543 34567788888999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhcCChHHHHHHH
Q 000432 1421 VLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIK 1496 (1513)
Q Consensus 1421 iLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~~ 1496 (1513)
||||||++||+.+...+.+.|++..+++|+|+++|+++.+..||+|++|++|++++.|++++++++ .+.|+.+++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 235 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQ 235 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHh
Confidence 999999999999999999999988778999999999999988999999999999999999999987 677777664
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=416.64 Aligned_cols=193 Identities=22% Similarity=0.360 Sum_probs=161.1
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|.++||+|+|.++. ..+++++|-|.++++||+|||+|+|||||++++.+.+.|+.|.+.-.-.. +++
T Consensus 389 vi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KLP 456 (614)
T ss_pred eEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cch
Confidence 599999999998764 79999999999999999999999999999999999999999988643211 222
Q ss_pred EEcC---CCccccCcHhhccCC-CC-CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHcc
Q 000432 1341 IIPQ---DPTLFDGTVRGNLDP-LV-QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLK 1415 (1513)
Q Consensus 1341 iVpQ---dp~LF~gTIR~NLdp-~~-~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr 1415 (1513)
.--| |-...+-|.-+|..| +. +-..+++...|.++||....+.. ++ ++||+|||.|+++||++++
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~------p~----~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVV------PM----SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccccc------ch----hhcccccchhHHHHHHHhc
Confidence 2223 445567777777754 23 35668889999999998544333 33 4799999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEe
Q 000432 1416 KSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEY 1477 (1513)
Q Consensus 1416 ~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~ 1477 (1513)
.|.||||||||++||.+|-....++|.+ |.| +||+|+|+...|.. +++|++.++|.+...
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe-~~G-gvv~vSHDfrlI~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINE-FPG-GVVLVSHDFRLISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhc-cCC-ceeeeechhhHHHHHHHHhHhhccCceeec
Confidence 9999999999999999999999999965 444 89999999999987 999999999998875
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-44 Score=399.94 Aligned_cols=221 Identities=62% Similarity=0.987 Sum_probs=210.0
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhce
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~i 1339 (1513)
|.|+++|++++|++...++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 56999999999975444699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCE
Q 000432 1340 GIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSI 1419 (1513)
Q Consensus 1340 siVpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~I 1419 (1513)
+|+||+|.+|++|+++|++++...+++++.++++..++.+++.++|.|+++...+.+.+||+|||||++||||++++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998766778899999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecCh
Q 000432 1420 LVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSP 1480 (1513)
Q Consensus 1420 LiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp 1480 (1513)
|+|||||++||+.+.+.+.+.|++..+++|+|+++|+++.+..||+|++|++|++++.|++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999988778999999999999999999999999999998864
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=375.31 Aligned_cols=220 Identities=27% Similarity=0.461 Sum_probs=199.1
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-----cEEEEcCeeCCC--CCh
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTM-----GSIIIDNVDITK--IGL 1332 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~-----G~I~IDGvdI~~--i~l 1332 (1513)
..++++|+++-|... .+|+|||++|++++.+|++|||||||||++++|-|+.+..+ |+|.+||.||-+ ++.
T Consensus 6 ~~~~~~~l~~yYg~~--~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECch--hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 468999999999854 59999999999999999999999999999999999999886 999999999987 578
Q ss_pred HHhhhceEEEcCCCccccCcHhhccCCCC---C----CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHH
Q 000432 1333 HDLRSRLGIIPQDPTLFDGTVRGNLDPLV---Q----YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405 (1513)
Q Consensus 1333 ~~LR~~isiVpQdp~LF~gTIR~NLdp~~---~----~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQ 1405 (1513)
-.||+++|+|+|.|.-|..||.||+.++. . .-||-+.++|+++.|+|.|.. .| .+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---rL----~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---RL----HKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---Hh----hCCccCCChhHHH
Confidence 89999999999999999999999997531 1 224557889999999998864 23 4567789999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1406 rl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
||||||||.-+|+||+||||||+||+.+-.+|.+.|.+..++-||++|||.+.-... +|+...+..|+++|+|.-+++-
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999999899999999999998766 9999999999999999999998
Q ss_pred hcCC
Q 000432 1485 ERED 1488 (1513)
Q Consensus 1485 ~~~~ 1488 (1513)
.++.
T Consensus 237 ~~P~ 240 (253)
T COG1117 237 TNPK 240 (253)
T ss_pred cCcc
Confidence 8763
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=379.21 Aligned_cols=217 Identities=29% Similarity=0.479 Sum_probs=195.0
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+|+||+++|.+ ..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 799999999984 359999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCcccc-CcHhhccCCC---CCCC----HHHHHHHHHHcCCc--HHHHhhhccccchhccCCCCCChhHHHHHHHHH
Q 000432 1342 IPQDPTLFD-GTVRGNLDPL---VQYS----DKQVWEALDKCQLG--DLVRAKEEKLDSTVAENGENWSVGQRQLFCLGR 1411 (1513)
Q Consensus 1342 VpQdp~LF~-gTIR~NLdp~---~~~s----deei~~aL~~~~l~--~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LAR 1411 (1513)
|-|..-||. -||.+||..- ...+ ++++.+.++.++|. +|..+.|. .|||||+||+.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~-----------eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH-----------ELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch-----------hcCcchhhHHHHHH
Confidence 999999995 5999999632 2333 45567889999996 46666664 57999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHh-hcCEEEEEeCCEEeEecChhHHHhcCC
Q 000432 1412 TLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVI-DSDLVLVLSDGRIAEYDSPTKLLERED 1488 (1513)
Q Consensus 1412 ALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~-~~DrIlVLd~G~IvE~Gtp~eLl~~~~ 1488 (1513)
||..+|+||+||||.+|||+-|...+|+-+.+.- -++|+|+|||+++... -+|||.||++|+|+.+|+|+++++++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 9999999999999999999999999999877654 3789999999999854 599999999999999999999999986
Q ss_pred hHH
Q 000432 1489 SFF 1491 (1513)
Q Consensus 1489 ~~f 1491 (1513)
.-|
T Consensus 229 n~F 231 (309)
T COG1125 229 NDF 231 (309)
T ss_pred HHH
Confidence 554
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=394.95 Aligned_cols=231 Identities=35% Similarity=0.566 Sum_probs=213.4
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++|++++|+....++|+|+||++++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57899999997543359999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EcCCCccccCcHhhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEE
Q 000432 1342 IPQDPTLFDGTVRGNLDPL-VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSIL 1420 (1513)
Q Consensus 1342 VpQdp~LF~gTIR~NLdp~-~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~IL 1420 (1513)
+||+|.+|+.|+++|+... ...+.+++.++++.+++.++++.+|.|+++.......+||+|||||++|||||+++|++|
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999764 234667788888999999999999999999998899999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhcCChHHHH
Q 000432 1421 VLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQ 1493 (1513)
Q Consensus 1421 iLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~ 1493 (1513)
+|||||++||+.+...+.+.|++..++.|+|+++|+++.+..||+|++|++|++++.|+++++.++ .+.|+.
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~ 232 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAK 232 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhh
Confidence 999999999999999999999988788999999999999999999999999999999999999876 455554
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=392.49 Aligned_cols=233 Identities=37% Similarity=0.616 Sum_probs=215.9
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++|++++|+.+ ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++++.+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5789999999643 359999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EcCCCccccCcHhhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEE
Q 000432 1342 IPQDPTLFDGTVRGNLDPL-VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSIL 1420 (1513)
Q Consensus 1342 VpQdp~LF~gTIR~NLdp~-~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~IL 1420 (1513)
+||+|.+|++|+++|+... ...+++++.++++.+++.+.+..+|.|+++.+.....+||+|||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999753 345677888999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhcCChHHHHHHH
Q 000432 1421 VLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIK 1496 (1513)
Q Consensus 1421 iLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~~ 1496 (1513)
||||||++||+++...+.+.|++..++.|+|+++|+++.+..||++++|++|++++.|+++++.++ .+.|+.++.
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~ 234 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWK 234 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHh
Confidence 999999999999999999999887668899999999999999999999999999999999999876 577776654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=384.21 Aligned_cols=207 Identities=57% Similarity=0.944 Sum_probs=190.1
Q ss_pred CCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHh
Q 000432 1256 WPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL 1335 (1513)
Q Consensus 1256 wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~L 1335 (1513)
||..+.|+++|++++|+....++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+..++
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 88899999999999997543469999999999999999999999999999999999999999999999999998888889
Q ss_pred hhceEEEcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHcc
Q 000432 1336 RSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLK 1415 (1513)
Q Consensus 1336 R~~isiVpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr 1415 (1513)
|++++|+||+|.+|++|+++|+..+...+++++.++++ +.+...+||||||||++||||+++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999998665556666655554 234677899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecCh
Q 000432 1416 KSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSP 1480 (1513)
Q Consensus 1416 ~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp 1480 (1513)
+|+||+|||||++||+++...+.+.|++..+++|+|+++|+++.+..||+|++|++|++++.|+|
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999988778999999999999988999999999999999875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=390.15 Aligned_cols=226 Identities=38% Similarity=0.636 Sum_probs=211.0
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhce
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~i 1339 (1513)
|.|+++|++++|+.. .++++|+||+|++||++||+|++|||||||+++|.|+++|.+|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 469999999999643 3599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcCCCccccCcHhhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCC
Q 000432 1340 GIIPQDPTLFDGTVRGNLDPLV-QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSS 1418 (1513)
Q Consensus 1340 siVpQdp~LF~gTIR~NLdp~~-~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ 1418 (1513)
+|+||+|.+|++|+++|+.... ...++++.++++.+++.++++.+|.|+++.+.....+||||||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999997543 345678888999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhc
Q 000432 1419 ILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1419 ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
+|+|||||++||+.+.+.+.+.|++..+++|+|+|+|+++.+..||+|++|++|++++.|+++++.++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999999999987678999999999999988999999999999999999888765
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=398.05 Aligned_cols=223 Identities=25% Similarity=0.399 Sum_probs=202.7
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC-------------eE
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG-------------TK 697 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g-------------~~ 697 (1513)
.|+++|++++|+++ ..++|+|+||+|++||+++|+|++|||||||+++|.|+++ .+|+|.++| .+
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 58999999999643 3579999999999999999999999999999999999998 799999998 36
Q ss_pred EEEcCCCcccCccHHHHHccCCCCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000432 698 AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADI 777 (1513)
Q Consensus 698 ayv~Q~~~l~~~ti~eNI~fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~i 777 (1513)
+||||+|++|++|++||+.+..++++++..++++.+++.+.++.+|+|++|.++|+|.+||||||||++||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999974444666788889999999999999999999999999999999999999999999999999
Q ss_pred EEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhcCccHHHHHHhh
Q 000432 778 YLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGAH 856 (1513)
Q Consensus 778 llLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 856 (1513)
+||||||++||+++.+.+ ++.+....+++|+|+|||+++++..||+|++|++|++++.|+++++++..+.|++++...
T Consensus 160 lllDEpts~LD~~~~~~l-~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 237 (275)
T cd03289 160 LLLDEPSAHLDPITYQVI-RKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPS 237 (275)
T ss_pred EEEECccccCCHHHHHHH-HHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhc
Confidence 999999999999997666 456666566899999999999988899999999999999999999999888888887644
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=407.45 Aligned_cols=224 Identities=29% Similarity=0.451 Sum_probs=194.7
Q ss_pred EEEEEEEEEEcCC--CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHH---hh
Q 000432 1262 ISFHNLQIRYAEH--LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHD---LR 1336 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~--~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~---LR 1336 (1513)
|+++||+++|+.+ ..++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 246999999999999999999999999999999999999999999999999999887655 58
Q ss_pred hceEEEcCCCcccc-CcHhhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHH
Q 000432 1337 SRLGIIPQDPTLFD-GTVRGNLDPL---VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFC 1408 (1513)
Q Consensus 1337 ~~isiVpQdp~LF~-gTIR~NLdp~---~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~ 1408 (1513)
++|++|||++.+|. .|+++|+... ...+ ++++.++++.+++.+...+.| ..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999995 7999999631 1222 345778899999887654443 479999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHh
Q 000432 1409 LGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1409 LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~ 1485 (1513)
|||||+.+|+||+||||||+||++|...|.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+|+|.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998753 7899999999999976 99999999999999999999987
Q ss_pred cCCh-HHHHHHH
Q 000432 1486 REDS-FFSQLIK 1496 (1513)
Q Consensus 1486 ~~~~-~f~~l~~ 1496 (1513)
++.. ..++++.
T Consensus 231 ~p~~~~~~~~~~ 242 (343)
T TIGR02314 231 HPKTPLAQKFIR 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 6543 3444544
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=389.46 Aligned_cols=233 Identities=36% Similarity=0.635 Sum_probs=212.6
Q ss_pred EEEEEEEEEEcCC-CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1262 ISFHNLQIRYAEH-LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~-~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
|+++|++++|+.. ..++|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 5789999999653 236999999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEcCCCccccCcHhhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCE
Q 000432 1341 IIPQDPTLFDGTVRGNLDPL-VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSI 1419 (1513)
Q Consensus 1341 iVpQdp~LF~gTIR~NLdp~-~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~I 1419 (1513)
|+||+|.+|+.|+++|+... ...+.+++.+.++..++.+++..+|.|+++.......+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999754 23456778888999999999999999999999988999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhcCChHHHHHH
Q 000432 1420 LVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495 (1513)
Q Consensus 1420 LiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~ 1495 (1513)
|+|||||++||+++.+.+.+.|++..+++|+|+++|+++.+..||+|++|++|++++.|+++++.+. .+..+.++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 235 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKLV 235 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHHh
Confidence 9999999999999999999999887678999999999999999999999999999999999998875 45555544
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=393.68 Aligned_cols=193 Identities=21% Similarity=0.304 Sum_probs=166.4
Q ss_pred CCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhh
Q 000432 1258 DVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337 (1513)
Q Consensus 1258 ~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~ 1337 (1513)
+...+++.+|+|.|.|+.++.++++++++..-+++++||++|+||||+++++.+-.+|..|.+-+.+ |.
T Consensus 359 ~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ 427 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RL 427 (582)
T ss_pred CCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cc
Confidence 3447999999999999887899999999999999999999999999999999999999999998877 88
Q ss_pred ceEEEcCCCccccCcHhhcc---CC----CCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHH
Q 000432 1338 RLGIIPQDPTLFDGTVRGNL---DP----LVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLG 1410 (1513)
Q Consensus 1338 ~isiVpQdp~LF~gTIR~NL---dp----~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LA 1410 (1513)
+|++-.|.-+=| ..-|. |. +..-++||+.+.|...|+...+...+ -..||||||-|+++|
T Consensus 428 ri~~f~Qhhvd~---l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA 494 (582)
T KOG0062|consen 428 RIKYFAQHHVDF---LDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFA 494 (582)
T ss_pred eecchhHhhhhH---HHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHH
Confidence 999999977643 22332 11 22348999999999998876543321 146999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeE
Q 000432 1411 RTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAE 1476 (1513)
Q Consensus 1411 RALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE 1476 (1513)
-....+|.+|||||||..||.++-..+-++|+. |+| -||+|+|+.+.|.. |+.++|.++|+|.-
T Consensus 495 ~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~-F~G-GVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 495 ACTWNNPHLLVLDEPTNHLDRDSLGALAKALKN-FNG-GVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHhcCCCcEEEecCCCccccHHHHHHHHHHHHh-cCC-cEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999999999975 555 79999999999987 99999999999976
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=381.77 Aligned_cols=219 Identities=35% Similarity=0.560 Sum_probs=202.3
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhce
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~i 1339 (1513)
|.|+++|++++|+....++|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46899999999965334599999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcCCCccccCcHhhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCC
Q 000432 1340 GIIPQDPTLFDGTVRGNLDPL-VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSS 1418 (1513)
Q Consensus 1340 siVpQdp~LF~gTIR~NLdp~-~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ 1418 (1513)
+++||+|.+|..|+++|+... ...+++++.++++..++.+.....|.|+++.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999754 2345667889999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEec
Q 000432 1419 ILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYD 1478 (1513)
Q Consensus 1419 ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~G 1478 (1513)
+|||||||++||.++...+.+.|++..+++|+|+++|+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999876668999999999988789999999999998765
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=362.42 Aligned_cols=201 Identities=29% Similarity=0.476 Sum_probs=170.4
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe--------------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------- 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------- 696 (1513)
-|+++|++.+|.. ..+|+|||++|++||.++|||||||||||||++|.|+-+|++|+|.++|.
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4889999999963 57999999999999999999999999999999999999999999999993
Q ss_pred EEEEcCCCcccC-ccHHHHHccCC----CCCch----HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 000432 697 KAYVPQSPWILT-GNIRENILFGN----QYDSC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQI 767 (1513)
Q Consensus 697 ~ayv~Q~~~l~~-~ti~eNI~fg~----~~~~~----~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~l 767 (1513)
+|+|+|+.-||. -||-|||..+. ..+++ +-.+.++..+|.+-.+.. ...|||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----------P~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAY-----------PAQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhC-----------ccccCcHHHHHHHH
Confidence 479999999995 59999999873 22221 222333444444444443 46899999999999
Q ss_pred HHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000432 768 ARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI-LKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 768 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
||||.-+|+++|+|||||||||+...++.+ ++..+ ..|.|.|+|||.+.|.+. ||+|+.|++|+|+++|+++++..+
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~-vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHH-HHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999888875 45444 468999999999999987 999999999999999999999765
Q ss_pred C
Q 000432 846 N 846 (1513)
Q Consensus 846 ~ 846 (1513)
.
T Consensus 227 p 227 (240)
T COG1126 227 P 227 (240)
T ss_pred C
Confidence 3
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=400.43 Aligned_cols=217 Identities=26% Similarity=0.387 Sum_probs=185.6
Q ss_pred ceEEEEEEEEEEcCCC---CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCC------
Q 000432 1260 GTISFHNLQIRYAEHL---PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKI------ 1330 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~---~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i------ 1330 (1513)
..|+++|++|+|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 4699999999997432 3599999999999999999999999999999999999999999999999998753
Q ss_pred ----------ChHHhhhceEEEcCCC--ccccCcHhhccCCCC---CCCHHH----HHHHHHHcCCcHHHHhhhccccch
Q 000432 1331 ----------GLHDLRSRLGIIPQDP--TLFDGTVRGNLDPLV---QYSDKQ----VWEALDKCQLGDLVRAKEEKLDST 1391 (1513)
Q Consensus 1331 ----------~l~~LR~~isiVpQdp--~LF~gTIR~NLdp~~---~~sdee----i~~aL~~~~l~~~I~~lp~gLdt~ 1391 (1513)
+...+|+++++|||+| .+|++|+++|+.+.. ..++++ +.++++.+++.+ ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~ 169 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD----------SY 169 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------hH
Confidence 3567899999999998 699999999996431 233333 333444444421 23
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHh-hcCEEEEE
Q 000432 1392 VAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVI-DSDLVLVL 1469 (1513)
Q Consensus 1392 V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~-~~DrIlVL 1469 (1513)
....+.+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+. .||||+||
T Consensus 170 ~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl 249 (320)
T PRK13631 170 LERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVM 249 (320)
T ss_pred hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 456678999999999999999999999999999999999999999999998753 5899999999999875 59999999
Q ss_pred eCCEEeEecChhHHHhc
Q 000432 1470 SDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1470 d~G~IvE~Gtp~eLl~~ 1486 (1513)
++|++++.|+|+++.++
T Consensus 250 ~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 250 DKGKILKTGTPYEIFTD 266 (320)
T ss_pred ECCEEEEeCCHHHHhcC
Confidence 99999999999998765
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=366.92 Aligned_cols=224 Identities=28% Similarity=0.430 Sum_probs=189.1
Q ss_pred eEEEEEEEEEEcCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCC-ChHHhhh
Q 000432 1261 TISFHNLQIRYAEHL--PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKI-GLHDLRS 1337 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~--~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i-~l~~LR~ 1337 (1513)
.++++|+++.|+.+. .++|+||||+|.+||.+||||+||||||||.++|.|+.+|++|+|.+||.+.... +-+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999997653 1499999999999999999999999999999999999999999999999766553 3335788
Q ss_pred ceEEEcCCCcc-c--cCcHhhccC-CCC----CCCHHHHHHHHHHcCCcHH-HHhhhccccchhccCCCCCChhHHHHHH
Q 000432 1338 RLGIIPQDPTL-F--DGTVRGNLD-PLV----QYSDKQVWEALDKCQLGDL-VRAKEEKLDSTVAENGENWSVGQRQLFC 1408 (1513)
Q Consensus 1338 ~isiVpQdp~L-F--~gTIR~NLd-p~~----~~sdeei~~aL~~~~l~~~-I~~lp~gLdt~V~e~G~nLSgGQRQrl~ 1408 (1513)
.+.+|+|||.- + .-||++-|. |.. .-..++++++|+.+|+.+- ..+.| ..||||||||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 99999999972 2 236666663 332 2235669999999999754 44445 358999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCc--EEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHh
Q 000432 1409 LGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDR--TVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1409 LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~--TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~ 1485 (1513)
|||||.-+|++||||||||+||.-..+.|.+.+.+..+++ |.|+|+|+++.+.. ||||+||++|+++|.++-.++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999998876655 99999999999988 99999999999999999999998
Q ss_pred cCChHHHHHH
Q 000432 1486 REDSFFSQLI 1495 (1513)
Q Consensus 1486 ~~~~~f~~l~ 1495 (1513)
.+...|.+..
T Consensus 232 ~~~h~ytr~L 241 (252)
T COG1124 232 HPSHPYTREL 241 (252)
T ss_pred CCccHHHHHH
Confidence 7555555433
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=362.15 Aligned_cols=225 Identities=27% Similarity=0.496 Sum_probs=198.4
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHH---hh
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHD---LR 1336 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~---LR 1336 (1513)
-.|++++|+++|.+. .||+||||+|++||.+||+|+||||||||++++.|+..|++|+|.|+|.||.+++-++ +|
T Consensus 7 ~~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 479999999999754 5999999999999999999999999999999999999999999999999999998754 69
Q ss_pred hceEEEcCCCccccC-cHhhccC-CCCC---CCHHHHH----HHHHHcCCcHH-HHhhhccccchhccCCCCCChhHHHH
Q 000432 1337 SRLGIIPQDPTLFDG-TVRGNLD-PLVQ---YSDKQVW----EALDKCQLGDL-VRAKEEKLDSTVAENGENWSVGQRQL 1406 (1513)
Q Consensus 1337 ~~isiVpQdp~LF~g-TIR~NLd-p~~~---~sdeei~----~aL~~~~l~~~-I~~lp~gLdt~V~e~G~nLSgGQRQr 1406 (1513)
+++|+++|..-||+. ||+||+. |..+ .+++++. .-|+.+||... .+.+| +.||||.|.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 999999999999976 9999997 4444 4455544 45778888876 34444 4689999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHH
Q 000432 1407 FCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKL 1483 (1513)
Q Consensus 1407 l~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eL 1483 (1513)
++||||+.-+|+|+++|||||+||+.+...+-+.|++.- -+.|+++|||+++++.. ||||+++.+|+|+-.|+++||
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999988887654 37899999999999988 899999999999999999999
Q ss_pred HhcCChHHHHHHHH
Q 000432 1484 LEREDSFFSQLIKE 1497 (1513)
Q Consensus 1484 l~~~~~~f~~l~~~ 1497 (1513)
.+.++-+.++.++-
T Consensus 234 ~~sd~P~v~qf~~G 247 (263)
T COG1127 234 LASDDPWVRQFFNG 247 (263)
T ss_pred HhCCCHHHHHHhcC
Confidence 99877776666553
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=383.69 Aligned_cols=211 Identities=30% Similarity=0.535 Sum_probs=186.6
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccC-----CCCCcEEEEcCeeCCCCC--hHH
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIV-----EPTMGSIIIDNVDITKIG--LHD 1334 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~-----ep~~G~I~IDGvdI~~i~--l~~ 1334 (1513)
|+++||+++|+.. ++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++.+++ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 5789999999653 5999999999999999999999999999999999999 999999999999998877 667
Q ss_pred hhhceEEEcCCCccccCcHhhccCCCC---C-C----CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHH
Q 000432 1335 LRSRLGIIPQDPTLFDGTVRGNLDPLV---Q-Y----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQL 1406 (1513)
Q Consensus 1335 LR~~isiVpQdp~LF~gTIR~NLdp~~---~-~----sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQr 1406 (1513)
+|++++++||++.+|..|+++|+.... . . .++++.++++..++.+...+.++ +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 889999999999999889999996421 1 1 23567888888888765544321 46899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHH
Q 000432 1407 FCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKL 1483 (1513)
Q Consensus 1407 l~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eL 1483 (1513)
++||||++++|++|+|||||++||+++.+.+.+.|++..+++|+|+++|+++.+.. ||+|++|++|++++.|+++++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999987656899999999999876 999999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=384.13 Aligned_cols=212 Identities=30% Similarity=0.454 Sum_probs=186.3
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCh---HHhhhc
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGL---HDLRSR 1338 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l---~~LR~~ 1338 (1513)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999964 359999999999999999999999999999999999999999999999999988764 567899
Q ss_pred eEEEcCCCccccC-cHhhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHH
Q 000432 1339 LGIIPQDPTLFDG-TVRGNLDPL----VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCL 1409 (1513)
Q Consensus 1339 isiVpQdp~LF~g-TIR~NLdp~----~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~L 1409 (1513)
+++|||++.+|.+ |+++|+... ...+ ++++.++++.+++.++..+.| .+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP-----------AELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHH
Confidence 9999999999986 999999642 1123 234677888888766543322 4699999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhc
Q 000432 1410 GRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1410 ARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999999988653 7899999999999876 999999999999999999998865
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=390.13 Aligned_cols=216 Identities=28% Similarity=0.441 Sum_probs=196.2
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++||+.+|++.. ||+|+|++|+.||.++++||||||||||+++|.|+.+|++|+|.|||.|++++++++ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999998653 999999999999999999999999999999999999999999999999999999887 7899
Q ss_pred EEcCCCccccC-cHhhccCCCCC-------CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHH
Q 000432 1341 IIPQDPTLFDG-TVRGNLDPLVQ-------YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRT 1412 (1513)
Q Consensus 1341 iVpQdp~LF~g-TIR~NLdp~~~-------~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARA 1412 (1513)
+|+|+..||.. ||++||.+.-. --++++.++++..++.+..++.|. .||||||||++||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHHH
Confidence 99999999965 99999975321 236678899999999999888874 579999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcCCh
Q 000432 1413 LLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDS 1489 (1513)
Q Consensus 1413 LLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~~~ 1489 (1513)
|.++|++++||||.|+||++....+...|++..+ +.|+|.|||+-...+. +|||.||++|+|.+.|+|.|+.+++..
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 9999999999999999999999998888877543 5799999999888776 999999999999999999999998876
Q ss_pred HH
Q 000432 1490 FF 1491 (1513)
Q Consensus 1490 ~f 1491 (1513)
.|
T Consensus 228 ~f 229 (338)
T COG3839 228 LF 229 (338)
T ss_pred hh
Confidence 55
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=375.83 Aligned_cols=213 Identities=30% Similarity=0.494 Sum_probs=189.1
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.++++|++|+|+. .++|+|+||+|++||.++|+||+|||||||+++|.|+..|.+|+|.+||.|+.+++.+++-++++
T Consensus 2 ~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 4789999999974 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCc-cccCcHhhccC----C----CCCCC--H-HHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHH
Q 000432 1341 IIPQDPT-LFDGTVRGNLD----P----LVQYS--D-KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFC 1408 (1513)
Q Consensus 1341 iVpQdp~-LF~gTIR~NLd----p----~~~~s--d-eei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~ 1408 (1513)
||||++. -|.-|++|=+. | +...+ | +.+.+||+.+++.++..+ .+ ..||||||||++
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-------~~----~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-------PV----DELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-------cc----cccChhHHHHHH
Confidence 9999975 45668888763 2 12222 3 357889999999887643 22 459999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhH-hhcCEEEEEeCCEEeEecChhHHHh
Q 000432 1409 LGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTV-IDSDLVLVLSDGRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1409 LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti-~~~DrIlVLd~G~IvE~Gtp~eLl~ 1485 (1513)
|||||.++|+||+||||||+||....-.|.+.+++.. +++|+|++.|+++.. +.||++++|++|+|+..|+|+|.+.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999876 369999999999865 6699999999999999999999987
Q ss_pred c
Q 000432 1486 R 1486 (1513)
Q Consensus 1486 ~ 1486 (1513)
.
T Consensus 229 ~ 229 (258)
T COG1120 229 E 229 (258)
T ss_pred H
Confidence 5
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=373.82 Aligned_cols=209 Identities=30% Similarity=0.451 Sum_probs=184.6
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++|++|+|+.. + ||+||||+|++||.+||+||+|||||||+++++|+..|++|+|.++|.++++... |.+||
T Consensus 4 ~i~v~nl~v~y~~~-~-vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR-P-VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE-e-eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 59999999999865 4 9999999999999999999999999999999999999999999999998876433 57999
Q ss_pred EEcCCC---ccccCcHhhccCCCC-----------CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHH
Q 000432 1341 IIPQDP---TLFDGTVRGNLDPLV-----------QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQL 1406 (1513)
Q Consensus 1341 iVpQdp---~LF~gTIR~NLdp~~-----------~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQr 1406 (1513)
||||.. .-|.-||+|=+..+. ..+.+++.+||+++++.++. |-+++ .|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-------~r~i~----~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-------DRQIG----ELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-------CCccc----ccCcHHHHH
Confidence 999965 358889999875321 12347899999999999875 34555 499999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1407 FCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK-DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1407 l~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~-~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
+.|||||+++|++|+|||||++||+.++..|.+.|++..+ ||||++|+|+++.+++ ||+|+.|+ +++...|+|++.+
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 9999999999999999999999999999999999988764 8999999999999987 99999985 6788999999998
Q ss_pred hc
Q 000432 1485 ER 1486 (1513)
Q Consensus 1485 ~~ 1486 (1513)
+.
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 75
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=376.69 Aligned_cols=215 Identities=29% Similarity=0.496 Sum_probs=196.3
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCC-CCChHHhhhce
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDIT-KIGLHDLRSRL 1339 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~-~i~l~~LR~~i 1339 (1513)
.|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.+++ ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 58999999999887 67999999999999999999999999999999999999999999999999999 48899999999
Q ss_pred EEEcCCC--ccccCcHhhccCCCC---CCCHH----HHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHH
Q 000432 1340 GIIPQDP--TLFDGTVRGNLDPLV---QYSDK----QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLG 1410 (1513)
Q Consensus 1340 siVpQdp--~LF~gTIR~NLdp~~---~~sde----ei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LA 1410 (1513)
|+|.|+| .+|..||.+.+.+.. ..+.+ .+.++|+.+++.++-..-| .+||||||||+|||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 799999999998642 34443 4778999999988744433 57999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcC
Q 000432 1411 RTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE 1487 (1513)
Q Consensus 1411 RALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~ 1487 (1513)
.+|..+|+|||||||||+||+...+.+.+.+++..+ ++|+|+|+|+++.+.+ |||++||++|+++..|+|+++.++.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 999999999999999999999999999999998764 4799999999999998 9999999999999999999998863
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=382.24 Aligned_cols=218 Identities=24% Similarity=0.417 Sum_probs=194.1
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCcEEEEcCeeCCCCChHHhhh
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE---PTMGSIIIDNVDITKIGLHDLRS 1337 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e---p~~G~I~IDGvdI~~i~l~~LR~ 1337 (1513)
.|+++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.|+.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 4789999999964 359999999999999999999999999999999999985 69999999999999988888999
Q ss_pred ceEEEcCCCccccCcHhhccCCCC---C------CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHH
Q 000432 1338 RLGIIPQDPTLFDGTVRGNLDPLV---Q------YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFC 1408 (1513)
Q Consensus 1338 ~isiVpQdp~LF~gTIR~NLdp~~---~------~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~ 1408 (1513)
+++|+||+|.+|..|+++|+.+.. . ..++++.++++.+++.+++..+ ..+.+.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHHH
Confidence 999999999999999999996421 1 1234577889999987665432 34456789999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcC
Q 000432 1409 LGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE 1487 (1513)
Q Consensus 1409 LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~ 1487 (1513)
||||++++|+||+|||||++||.++...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 232 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999999999987778999999999998865 9999999999999999999998754
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=379.55 Aligned_cols=222 Identities=32% Similarity=0.502 Sum_probs=194.3
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.|+...+..++|++++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999964 35999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEcCCCccccCcHhhccCCCC---CCCHHHHHHHHHHcCCc-HHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccC
Q 000432 1341 IIPQDPTLFDGTVRGNLDPLV---QYSDKQVWEALDKCQLG-DLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKK 1416 (1513)
Q Consensus 1341 iVpQdp~LF~gTIR~NLdp~~---~~sdeei~~aL~~~~l~-~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~ 1416 (1513)
++||+|.+|+.|+++|+.... ...++++.+.++..++. +.. .....+||||||||++||||++++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYA-----------TRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHh-----------hCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999997431 22345677888888775 222 234567999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcCChHHHH
Q 000432 1417 SSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDSFFSQ 1493 (1513)
Q Consensus 1417 ~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~ 1493 (1513)
|++|||||||++||.++...+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..++...|.+
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 99999999999999999999999998764 37899999999999876 9999999999999999999998765444544
Q ss_pred HH
Q 000432 1494 LI 1495 (1513)
Q Consensus 1494 l~ 1495 (1513)
.+
T Consensus 230 ~~ 231 (241)
T PRK14250 230 LF 231 (241)
T ss_pred HH
Confidence 33
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=387.99 Aligned_cols=215 Identities=28% Similarity=0.433 Sum_probs=192.0
Q ss_pred eEEEEEEEEEEcCC-CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhce
Q 000432 1261 TISFHNLQIRYAEH-LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~-~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~i 1339 (1513)
.|+++||+++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743 24599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcCCC--ccccCcHhhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHH
Q 000432 1340 GIIPQDP--TLFDGTVRGNLDPLV---QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLG 1410 (1513)
Q Consensus 1340 siVpQdp--~LF~gTIR~NLdp~~---~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LA 1410 (1513)
+++||+| .++..||++||.+.. ..+ ++++.++++.+++.++....| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 366789999997431 123 356788999999877655443 57999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhc
Q 000432 1411 RTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1411 RALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
|||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||||++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999988653 7999999999999988999999999999999999998765
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=376.07 Aligned_cols=217 Identities=30% Similarity=0.477 Sum_probs=198.8
Q ss_pred CCceEEEEEEEEEEcCC-CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhh
Q 000432 1258 DVGTISFHNLQIRYAEH-LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLR 1336 (1513)
Q Consensus 1258 ~~g~I~f~nvsf~Y~~~-~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR 1336 (1513)
..|.|+++|++++|+.. ..++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++...+....|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35789999999999753 23599999999999999999999999999999999999999999999999999888888888
Q ss_pred hceEEEcCCCccccCcHhhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHcc
Q 000432 1337 SRLGIIPQDPTLFDGTVRGNLDPL-VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLK 1415 (1513)
Q Consensus 1337 ~~isiVpQdp~LF~gTIR~NLdp~-~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr 1415 (1513)
++++++||+|.+|++|+++|++.. ...+.+++++..+..++.++++.+|.|+++.+.+...+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999853 3344556777777788899999999899999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEE
Q 000432 1416 KSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRI 1474 (1513)
Q Consensus 1416 ~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~I 1474 (1513)
+|++|||||||++||+++.+.+.+.|++..+++|+|+|+|+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999987777999999999999989999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=395.95 Aligned_cols=224 Identities=28% Similarity=0.427 Sum_probs=192.1
Q ss_pred EEEEEEEEEEcC--CCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHH---hh
Q 000432 1262 ISFHNLQIRYAE--HLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHD---LR 1336 (1513)
Q Consensus 1262 I~f~nvsf~Y~~--~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~---LR 1336 (1513)
|+++||+++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 2346999999999999999999999999999999999999999999999999999887654 47
Q ss_pred hceEEEcCCCcccc-CcHhhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHH
Q 000432 1337 SRLGIIPQDPTLFD-GTVRGNLDPL---VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFC 1408 (1513)
Q Consensus 1337 ~~isiVpQdp~LF~-gTIR~NLdp~---~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~ 1408 (1513)
++++||||++.+|. .|+++|+... ...+ ++++.++++..++.++..+. ..+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRY-----------PAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 89999999999986 6999999642 1222 24567788888876654332 3579999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHh
Q 000432 1409 LGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1409 LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~ 1485 (1513)
|||||+++|+||+|||||++||+.+...+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998653 7899999999999877 99999999999999999999987
Q ss_pred cCChHH-HHHHH
Q 000432 1486 REDSFF-SQLIK 1496 (1513)
Q Consensus 1486 ~~~~~f-~~l~~ 1496 (1513)
++...+ +.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (343)
T PRK11153 231 HPKHPLTREFIQ 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 654333 33443
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=395.13 Aligned_cols=217 Identities=22% Similarity=0.359 Sum_probs=192.0
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++|++++|+.+ ..+|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.++.+++.+ +++|+
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 48999999999433 3599999999999999999999999999999999999999999999999999987765 47899
Q ss_pred EEcCCCcccc-CcHhhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHH
Q 000432 1341 IIPQDPTLFD-GTVRGNLDPLV---QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRT 1412 (1513)
Q Consensus 1341 iVpQdp~LF~-gTIR~NLdp~~---~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARA 1412 (1513)
||||++.+|. .|+++|+.+.. ..+ ++++.++++.+++.++..+.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 59999997431 123 245778899999988766655 4799999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcCCh
Q 000432 1413 LLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDS 1489 (1513)
Q Consensus 1413 LLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~~~ 1489 (1513)
|+++|+||+||||||+||..+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 9999999999999999999999999999987654 7899999999998865 999999999999999999999988765
Q ss_pred HH
Q 000432 1490 FF 1491 (1513)
Q Consensus 1490 ~f 1491 (1513)
.|
T Consensus 229 ~~ 230 (356)
T PRK11650 229 TF 230 (356)
T ss_pred HH
Confidence 44
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=379.80 Aligned_cols=220 Identities=28% Similarity=0.452 Sum_probs=192.8
Q ss_pred CceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCC--CC
Q 000432 1259 VGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PTMGSIIIDNVDITK--IG 1331 (1513)
Q Consensus 1259 ~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e-----p~~G~I~IDGvdI~~--i~ 1331 (1513)
.+.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 467999999999964 359999999999999999999999999999999999986 589999999999863 45
Q ss_pred hHHhhhceEEEcCCCccccCcHhhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhH
Q 000432 1332 LHDLRSRLGIIPQDPTLFDGTVRGNLDPL----VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQ 1403 (1513)
Q Consensus 1332 l~~LR~~isiVpQdp~LF~gTIR~NLdp~----~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQ 1403 (1513)
...+|++++|+||+|.+|..|+++|+... ...+ +++++++++.+++.+.+. ....+...+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHHH
Confidence 66789999999999999999999999642 1122 356788899888865443 23345667899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhH
Q 000432 1404 RQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTK 1482 (1513)
Q Consensus 1404 RQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~e 1482 (1513)
|||++||||++++|+||||||||++||.++.+.+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988677899999999999865 99999999999999999999
Q ss_pred HHhcC
Q 000432 1483 LLERE 1487 (1513)
Q Consensus 1483 Ll~~~ 1487 (1513)
+.+.+
T Consensus 242 ~~~~~ 246 (260)
T PRK10744 242 IFTKP 246 (260)
T ss_pred HHhCC
Confidence 98754
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=374.05 Aligned_cols=210 Identities=26% Similarity=0.384 Sum_probs=183.7
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++||+++|+++..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.... .++|+++++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5799999999753245999999999999999999999999999999999999999999999999997643 667889999
Q ss_pred EcCCCccc-cCcHhhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1342 IPQDPTLF-DGTVRGNLDPLV---QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1342 VpQdp~LF-~gTIR~NLdp~~---~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
+||+|.+| ..|+++|+.... ..+ ++++.++++..++.+.. ++. ..+||+|||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------NKR----ARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------hCh----hhhCCHHHHHHHHHHHHH
Confidence 99999998 579999996321 122 24567788888775543 233 247999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHH
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKL 1483 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eL 1483 (1513)
+++|++|+|||||++||+.+.+.+.+.|++..+++|+|+++|+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999988778999999999999976 999999999999999999875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=378.21 Aligned_cols=220 Identities=29% Similarity=0.480 Sum_probs=191.0
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCC-----CcEEEEcCeeCCCC--ChHH
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPT-----MGSIIIDNVDITKI--GLHD 1334 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~-----~G~I~IDGvdI~~i--~l~~ 1334 (1513)
|+++||+++|++. .+|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++... +...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 7899999999753 5999999999999999999999999999999999999998 99999999999763 4566
Q ss_pred hhhceEEEcCCCccccCcHhhccCCC---CC-CC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHH
Q 000432 1335 LRSRLGIIPQDPTLFDGTVRGNLDPL---VQ-YS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQL 1406 (1513)
Q Consensus 1335 LR~~isiVpQdp~LF~gTIR~NLdp~---~~-~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQr 1406 (1513)
.|++++|+||++.+|..|+++|+... .. .+ ++++.++++..++.++++. .......+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD-------RLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh-------HhhCCcccCCHHHHHH
Confidence 78999999999999999999999631 11 12 3467788888988754421 1233456899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHh
Q 000432 1407 FCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1407 l~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~ 1485 (1513)
++|||||+++|++++|||||++||+.+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667899999999999876 99999999999999999999987
Q ss_pred cCChH
Q 000432 1486 REDSF 1490 (1513)
Q Consensus 1486 ~~~~~ 1490 (1513)
++...
T Consensus 233 ~~~~~ 237 (247)
T TIGR00972 233 NPKEK 237 (247)
T ss_pred CCCCh
Confidence 64443
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=384.77 Aligned_cols=212 Identities=25% Similarity=0.417 Sum_probs=188.9
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999643 35999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEcCCC--ccccCcHhhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHH
Q 000432 1341 IIPQDP--TLFDGTVRGNLDPLV---QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGR 1411 (1513)
Q Consensus 1341 iVpQdp--~LF~gTIR~NLdp~~---~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LAR 1411 (1513)
|+||+| .+|..|+++|+.+.. ..+ ++++.++++.+++.+...+.| ..||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999998 688999999997421 122 356788899999877655544 369999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1412 TLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1412 ALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
||+++|++|+|||||++||+.+...+.+.|++.. +++|+|+++|+++.+.. ||||++|++|++++.|+++++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999998764 47999999999999865 9999999999999999987653
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=386.35 Aligned_cols=217 Identities=30% Similarity=0.469 Sum_probs=187.1
Q ss_pred eEEEEEEEEEEcCCC---CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC--hHHh
Q 000432 1261 TISFHNLQIRYAEHL---PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG--LHDL 1335 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~---~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~--l~~L 1335 (1513)
.|+++||+++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 388999999997532 36999999999999999999999999999999999999999999999999998754 4678
Q ss_pred hhceEEEcCCC--ccccCcHhhccCCCC---CCCH----HHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHH
Q 000432 1336 RSRLGIIPQDP--TLFDGTVRGNLDPLV---QYSD----KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQL 1406 (1513)
Q Consensus 1336 R~~isiVpQdp--~LF~gTIR~NLdp~~---~~sd----eei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQr 1406 (1513)
|++++||||+| .+|+.|+++|+.+.. ..++ +++.++++.+++.. ++........||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHH
Confidence 99999999998 578999999996421 2333 34677888888751 011223346799999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHH
Q 000432 1407 FCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKL 1483 (1513)
Q Consensus 1407 l~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eL 1483 (1513)
++|||||+.+|+||||||||++||+.+...+.+.|++..+ +.|||+|+|+++.+.. ||||++|++|++++.|+++++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999988753 7899999999999865 999999999999999999998
Q ss_pred Hhc
Q 000432 1484 LER 1486 (1513)
Q Consensus 1484 l~~ 1486 (1513)
.+.
T Consensus 233 ~~~ 235 (287)
T PRK13637 233 FKE 235 (287)
T ss_pred HhC
Confidence 764
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=344.50 Aligned_cols=207 Identities=29% Similarity=0.426 Sum_probs=187.7
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHH---hhhc
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHD---LRSR 1338 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~---LR~~ 1338 (1513)
|+|+||+.+|+.+ +++|+||||+|++||.+-++|+||||||||+++|++...|++|+|.++|.|++++.-++ ||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 8999999999887 77999999999999999999999999999999999999999999999999999988776 8999
Q ss_pred eEEEcCCCcccc-CcHhhccCC-CC--CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHH
Q 000432 1339 LGIIPQDPTLFD-GTVRGNLDP-LV--QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLG 1410 (1513)
Q Consensus 1339 isiVpQdp~LF~-gTIR~NLdp-~~--~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LA 1410 (1513)
||+|+||--|.. -|+.||+.+ .. ..+ .+++.++|+.+||.+-...+|. .|||||+||+|||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHHH
Confidence 999999998774 599999973 21 222 3467889999999999999884 5799999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhc-CEEEEEeCCEEeEecCh
Q 000432 1411 RTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVIDS-DLVLVLSDGRIAEYDSP 1480 (1513)
Q Consensus 1411 RALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~-DrIlVLd~G~IvE~Gtp 1480 (1513)
||+..+|++|+-||||.+||+++...|.+.+.+.- .|.||++.||+.+.+.++ -|++.+++|+++..+.+
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999999999999999999999999999997754 589999999999999885 68999999999987665
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=378.48 Aligned_cols=222 Identities=26% Similarity=0.402 Sum_probs=192.2
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCC--CChH
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP-----TMGSIIIDNVDITK--IGLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep-----~~G~I~IDGvdI~~--i~l~ 1333 (1513)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 6999999999964 3599999999999999999999999999999999999997 48999999999864 3456
Q ss_pred HhhhceEEEcCCCccccCcHhhccCCCC----CC----CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHH
Q 000432 1334 DLRSRLGIIPQDPTLFDGTVRGNLDPLV----QY----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405 (1513)
Q Consensus 1334 ~LR~~isiVpQdp~LF~gTIR~NLdp~~----~~----sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQ 1405 (1513)
.+|++++|+||+|.+|+.|+++|+.+.. .. .++++.++++.+++.+.+ ++.+|+ ...+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHHHH
Confidence 7889999999999999999999996421 11 245677888888876543 233444 45689999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1406 rl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
|++|||||+++|++|||||||++||..+...+.+.|++..+++|+|+|+|+++.+.+ ||||++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988778999999999999866 9999999999999999999998
Q ss_pred hcCChHH
Q 000432 1485 EREDSFF 1491 (1513)
Q Consensus 1485 ~~~~~~f 1491 (1513)
+++.-.|
T Consensus 238 ~~~~~~~ 244 (254)
T PRK14273 238 FNPKNTK 244 (254)
T ss_pred hCCCChH
Confidence 7654433
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=378.90 Aligned_cols=219 Identities=24% Similarity=0.423 Sum_probs=191.2
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCC--CChH
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PTMGSIIIDNVDITK--IGLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e-----p~~G~I~IDGvdI~~--i~l~ 1333 (1513)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999964 359999999999999999999999999999999999975 689999999999975 3456
Q ss_pred HhhhceEEEcCCCccccCcHhhccCCC----CC----CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHH
Q 000432 1334 DLRSRLGIIPQDPTLFDGTVRGNLDPL----VQ----YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405 (1513)
Q Consensus 1334 ~LR~~isiVpQdp~LF~gTIR~NLdp~----~~----~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQ 1405 (1513)
.+|++++|+||++.+|.+|+++|+... +. ..++++.++++.+++.+.+.. .......+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHHH
Confidence 788999999999999999999999632 11 124567888999888765432 234456789999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1406 rl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
|++||||++++|+||+|||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999865 9999999999999999999998
Q ss_pred hcCC
Q 000432 1485 ERED 1488 (1513)
Q Consensus 1485 ~~~~ 1488 (1513)
+.+.
T Consensus 237 ~~~~ 240 (253)
T PRK14242 237 TRPR 240 (253)
T ss_pred cCCC
Confidence 7643
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=384.20 Aligned_cols=215 Identities=25% Similarity=0.419 Sum_probs=192.7
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++||+++|+...+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999754446999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcCCC--ccccCcHhhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHH
Q 000432 1341 IIPQDP--TLFDGTVRGNLDPLV---QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGR 1411 (1513)
Q Consensus 1341 iVpQdp--~LF~gTIR~NLdp~~---~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LAR 1411 (1513)
|+||+| .+++.|+++||.... ..+ ++++.++++.+++.+++...| ..||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 567789999997421 123 245778888888887766554 379999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhc
Q 000432 1412 TLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1412 ALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
||+.+|+||+|||||++||+.+...+.+.|++..+ ++|+|+++|+++.+..||+|++|++|++++.|+++++.+.
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998754 7899999999999999999999999999999999998765
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=393.15 Aligned_cols=217 Identities=25% Similarity=0.399 Sum_probs=192.2
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhce
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~i 1339 (1513)
..|+++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+.+.+ |+++
T Consensus 5 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred cEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 46999999999964 3599999999999999999999999999999999999999999999999999887654 5789
Q ss_pred EEEcCCCccccC-cHhhccCCC-C--CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHH
Q 000432 1340 GIIPQDPTLFDG-TVRGNLDPL-V--QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGR 1411 (1513)
Q Consensus 1340 siVpQdp~LF~g-TIR~NLdp~-~--~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LAR 1411 (1513)
++|+|++.||.. |+++|+.+. . ..+ ++++.++++..++.++..+.| ..||||||||++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999965 999999742 1 122 356788999999877654443 479999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcCC
Q 000432 1412 TLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERED 1488 (1513)
Q Consensus 1412 ALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~~ 1488 (1513)
||+++|+||+||||||+||+.+...+++.|++..+ ++|+|+|||+.+.+.. ||||+||++|+|++.|+|+++.+++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999988754 7899999999999866 99999999999999999999998876
Q ss_pred hHH
Q 000432 1489 SFF 1491 (1513)
Q Consensus 1489 ~~f 1491 (1513)
..|
T Consensus 230 ~~~ 232 (351)
T PRK11432 230 SRF 232 (351)
T ss_pred chH
Confidence 544
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=367.36 Aligned_cols=199 Identities=25% Similarity=0.413 Sum_probs=183.5
Q ss_pred EEEEEEEEEEcCCC---CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhc
Q 000432 1262 ISFHNLQIRYAEHL---PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSR 1338 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~---~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~ 1338 (1513)
|+++||+++|++.. +++|+|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999997642 3699999999999999999999999999999999999999999999999 6
Q ss_pred eEEEcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCC
Q 000432 1339 LGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSS 1418 (1513)
Q Consensus 1339 isiVpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ 1418 (1513)
++|+||+|.+|++|+++|+.+....++++.+++++.+++.+++..+|.|+++.+.+.+.+||+|||||++||||++++|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998765566778889999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHH-HHHHhc-CCcEEEEeccChhhHhhcCEEEEEeCCE
Q 000432 1419 ILVLDEATASVDSATDGVIQK-IISQEF-KDRTVVTIAHRIHTVIDSDLVLVLSDGR 1473 (1513)
Q Consensus 1419 ILiLDEaTSslD~~Te~~Iq~-~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVLd~G~ 1473 (1513)
+++|||||++||.++.+.+.+ .+++.. +++|||+++|+++.+..||+|++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999877766 566554 3689999999999999999999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=354.84 Aligned_cols=221 Identities=27% Similarity=0.414 Sum_probs=193.7
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC---hHHhhh
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG---LHDLRS 1337 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~---l~~LR~ 1337 (1513)
.|+++||+.+|+.+ ..+|+||||+|++||.|||+|+||||||||+++|.|+.+|++|+|.++|.++.... ++++|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 58999999999754 46999999999999999999999999999999999999999999999999999988 777889
Q ss_pred ceEEEcCCCccccC-cHhhccCC------------CCCCCH---HHHHHHHHHcCCcHHHHhhhccccchhccCCCCCCh
Q 000432 1338 RLGIIPQDPTLFDG-TVRGNLDP------------LVQYSD---KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSV 1401 (1513)
Q Consensus 1338 ~isiVpQdp~LF~g-TIR~NLdp------------~~~~sd---eei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSg 1401 (1513)
++|+|+|.+-|-.. |+-+|+.. ++-++. .+..+||+++++.|..-. +.++|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCCc
Confidence 99999999998765 89999731 233443 457889999999877543 3468999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEec
Q 000432 1402 GQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYD 1478 (1513)
Q Consensus 1402 GQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~G 1478 (1513)
||+||++|||||.++|+|++=|||||+||+++.+.|++.|++.. .|.|||+.-|.++..+. ||||+-|++|+|+-.|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999998765 57899999999999876 9999999999999999
Q ss_pred ChhHHHhcCChHHHHHHH
Q 000432 1479 SPTKLLEREDSFFSQLIK 1496 (1513)
Q Consensus 1479 tp~eLl~~~~~~f~~l~~ 1496 (1513)
+++||-+ ..+.+.|.
T Consensus 231 ~~~el~~---~~~~~iYg 245 (258)
T COG3638 231 PASELTD---EALDEIYG 245 (258)
T ss_pred ChhhhhH---HHHHHHhc
Confidence 9999643 34444443
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=359.04 Aligned_cols=204 Identities=28% Similarity=0.443 Sum_probs=177.0
Q ss_pred EEEEEEEEEEcCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHH---h-
Q 000432 1262 ISFHNLQIRYAEHL--PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHD---L- 1335 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~--~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~---L- 1335 (1513)
++++||+..|..+. ..+|+|+||+|++||.|+|+||||||||||+++|-++-.|++|+|.++|.|+..++-++ +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996543 36999999999999999999999999999999999999999999999999999998544 3
Q ss_pred hhceEEEcCCCccccC-cHhhccC-C--CCCC----CHHHHHHHHHHcCCcHHHH-hhhccccchhccCCCCCChhHHHH
Q 000432 1336 RSRLGIIPQDPTLFDG-TVRGNLD-P--LVQY----SDKQVWEALDKCQLGDLVR-AKEEKLDSTVAENGENWSVGQRQL 1406 (1513)
Q Consensus 1336 R~~isiVpQdp~LF~g-TIR~NLd-p--~~~~----sdeei~~aL~~~~l~~~I~-~lp~gLdt~V~e~G~nLSgGQRQr 1406 (1513)
|++||+|+|+..|++. |++||+. | +... .++.+.+.++..++.+... +.| ..||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 5679999999998865 9999996 2 2222 2455667777778876554 333 4689999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhcCEEEEEeCCEEeE
Q 000432 1407 FCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVIDSDLVLVLSDGRIAE 1476 (1513)
Q Consensus 1407 l~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE 1476 (1513)
+||||||+.+|+|++.||||+|||.+|.+.|.+.+++.- .++|+|+|||+......|||++.|.+|++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999874 3789999999999999999999999999543
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=376.31 Aligned_cols=219 Identities=25% Similarity=0.373 Sum_probs=195.8
Q ss_pred CceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhc
Q 000432 1259 VGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSR 1338 (1513)
Q Consensus 1259 ~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~ 1338 (1513)
.+.|+++|++++ + .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+|| +
T Consensus 37 ~~~l~i~nls~~---~-~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLV---G-APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEe---c-ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 457999999995 2 3599999999999999999999999999999999999999999999998 3
Q ss_pred eEEEcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCC
Q 000432 1339 LGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSS 1418 (1513)
Q Consensus 1339 isiVpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ 1418 (1513)
++|+||++.+|++|+++|+.+.....+.++.++++.+++.+.+..+|.++++.+++.+.+||+|||||++|||||+++|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998643445556778888899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHH-HHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhcCChHHHHHH
Q 000432 1419 ILVLDEATASVDSATDGVIQKI-ISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495 (1513)
Q Consensus 1419 ILiLDEaTSslD~~Te~~Iq~~-i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l~ 1495 (1513)
||||||||++||+++...+.+. +++..+++|+|+|+|+++.+..||+|++|++|++++.|+++++.+. ...|.+.+
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 256 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFSSKL 256 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHHHHH
Confidence 9999999999999999888765 4555568999999999999989999999999999999999999865 34444333
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=374.17 Aligned_cols=212 Identities=26% Similarity=0.409 Sum_probs=183.7
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++||+++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 3789999999964 359999999999999999999999999999999999999999999999999876653 367899
Q ss_pred EEcCCCcccc-CcHhhccCCCC---CC----C----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHH
Q 000432 1341 IIPQDPTLFD-GTVRGNLDPLV---QY----S----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFC 1408 (1513)
Q Consensus 1341 iVpQdp~LF~-gTIR~NLdp~~---~~----s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~ 1408 (1513)
|+||+|.+|. .|+++|+.... .. + ++++.++++..++.+...+. ..+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----------PAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHH
Confidence 9999999986 59999997421 11 1 23466778888776544332 3579999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHh
Q 000432 1409 LGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1409 LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~ 1485 (1513)
|||||+++|+||+|||||++||+++.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999987643 7899999999998765 99999999999999999999986
Q ss_pred cC
Q 000432 1486 RE 1487 (1513)
Q Consensus 1486 ~~ 1487 (1513)
++
T Consensus 227 ~~ 228 (239)
T cd03296 227 HP 228 (239)
T ss_pred CC
Confidence 54
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=349.88 Aligned_cols=469 Identities=20% Similarity=0.259 Sum_probs=341.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccccChhHHHHHHhcchHHHhHHHHHHHHHHHHH
Q 000432 986 VYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFS 1065 (1513)
Q Consensus 986 vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~ 1065 (1513)
.|+++.....+...+.......+|.....+++.++.++++.+|+.-+++...++++.++++|+..+. +-...+..++++
T Consensus 53 ~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa 131 (546)
T COG4615 53 EFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQA 131 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHH
Confidence 3444444445555666777888999999999999999999999999999999999999999999998 444556678888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHchHHHHHHhchHHHHHHH
Q 000432 1066 IIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNA 1145 (1513)
Q Consensus 1066 ~~~~~~~l~v~~~~~~~l~lv~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~ 1145 (1513)
.+..+++.+.+++.+|+++++.+..+++.++.+...++..-+-.+...+....+.++++..+.|.+..+....-.+....
T Consensus 132 ~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~ 211 (546)
T COG4615 132 IILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHN 211 (546)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHh
Confidence 89999999999999999988777666665555444433333334444455667889999999999999887654432222
Q ss_pred H------HHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1146 N------LSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASIIWN 1219 (1513)
Q Consensus 1146 ~------~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~i~~g~~g~~l~y~~~l~~~l~~~~~~ 1219 (1513)
+ ++.-+...+.......+..|....+-.+..+++ ++... .+--+...+...+...+-+-.++..++..
T Consensus 212 ~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf----~lal~--~~w~st~~a~tivlvlLflr~pL~s~vgi 285 (546)
T COG4615 212 NLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVF----WLALS--LGWASTNVAATIVLVLLFLRTPLLSAVGI 285 (546)
T ss_pred hhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHh--hccchhhHHHHHHHHHHHHhhHHHHHHhh
Confidence 1 112222222222222344454433222211111 11111 11111111111222234456778888888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCC
Q 000432 1220 ICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTG 1299 (1513)
Q Consensus 1220 ~~~le~~~~sveRi~e~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTG 1299 (1513)
+-.+-.+.++.+||.++...|..+.. ....+-++| ..||++||.|.|.+.. .-+..||++|+.||.|-|+|.+|
T Consensus 286 lP~l~~AqvA~~kiakle~~~~~a~~--~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NG 359 (546)
T COG4615 286 LPTLLTAQVAFNKIAKLELAPYKADF--PRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNG 359 (546)
T ss_pred hhHHHHHHHHHHHHHHhhcCCccccC--CCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCC
Confidence 88888999999999998763332211 112222335 4699999999998764 35788999999999999999999
Q ss_pred CCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcH
Q 000432 1300 SGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGD 1379 (1513)
Q Consensus 1300 SGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~ 1379 (1513)
|||||++++|.|+|.|++|+|++||.+++.-++++.|+-++-|.-|-+||+.++ -|.+.++.+.+..-|++..+..
T Consensus 360 sGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~LqrLel~~ 435 (546)
T COG4615 360 SGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWLQRLELAH 435 (546)
T ss_pred CcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999998765 2333477777777777665544
Q ss_pred HHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCh
Q 000432 1380 LVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRI 1457 (1513)
Q Consensus 1380 ~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl 1457 (1513)
...-. +|==+ -..||-|||.|+++--|++-+.+|+++||=-|--||.=.+...+.+--.. .|+||+.|+|+-
T Consensus 436 ktsl~-d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd 509 (546)
T COG4615 436 KTSLN-DGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD 509 (546)
T ss_pred hhccc-CCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc
Confidence 32211 11111 13589999999999999999999999999999999999988877654332 599999999999
Q ss_pred hhHhhcCEEEEEeCCEEeEe
Q 000432 1458 HTVIDSDLVLVLSDGRIAEY 1477 (1513)
Q Consensus 1458 ~ti~~~DrIlVLd~G~IvE~ 1477 (1513)
+-...+||++-|++|+++|.
T Consensus 510 ~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 510 HYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred hhhhhHHHHHHHhcCceeec
Confidence 99999999999999999986
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=376.50 Aligned_cols=211 Identities=29% Similarity=0.457 Sum_probs=184.0
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC---hHHhhhc
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG---LHDLRSR 1338 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~---l~~LR~~ 1338 (1513)
|+++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 5789999999752 35999999999999999999999999999999999999999999999999998876 5668899
Q ss_pred eEEEcCCCcccc-CcHhhccCCCC---------------CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChh
Q 000432 1339 LGIIPQDPTLFD-GTVRGNLDPLV---------------QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVG 1402 (1513)
Q Consensus 1339 isiVpQdp~LF~-gTIR~NLdp~~---------------~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgG 1402 (1513)
++++||++.+|. .|+++|+.... ...++++.++++..++.+.. ...+.+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-----------YQRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-----------CCCcccCCHH
Confidence 999999999887 69999995310 11234566777777765432 2345689999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecC
Q 000432 1403 QRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDS 1479 (1513)
Q Consensus 1403 QRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gt 1479 (1513)
||||++||||++++|+||||||||++||+.+...+.+.|++.. .++|+|+|+|+++.+.+ ||+|++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999865 37999999999999984 99999999999999999
Q ss_pred hhHHH
Q 000432 1480 PTKLL 1484 (1513)
Q Consensus 1480 p~eLl 1484 (1513)
++++.
T Consensus 229 ~~~~~ 233 (241)
T cd03256 229 PAELT 233 (241)
T ss_pred HHHhh
Confidence 99874
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=371.24 Aligned_cols=202 Identities=28% Similarity=0.401 Sum_probs=177.3
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChH---Hhhhc
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLH---DLRSR 1338 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~---~LR~~ 1338 (1513)
|+++|++++|+++..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999965434599999999999999999999999999999999999999999999999999876544 47889
Q ss_pred eEEEcCCCcccc-CcHhhccCCC----C---CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHH
Q 000432 1339 LGIIPQDPTLFD-GTVRGNLDPL----V---QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLG 1410 (1513)
Q Consensus 1339 isiVpQdp~LF~-gTIR~NLdp~----~---~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LA 1410 (1513)
++|+||+|.+|. .|+++|+... + +..++++.++++.+++.+...+.| .+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999986 5999999632 1 113456888999999876654443 47999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEE
Q 000432 1411 RTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRI 1474 (1513)
Q Consensus 1411 RALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~I 1474 (1513)
|||+++|+||+|||||++||+++.+.+.+.|++.. +++|+|+|+|+++.+.. ||+|++|++|+|
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998764 47899999999999976 899999999985
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=393.13 Aligned_cols=205 Identities=25% Similarity=0.395 Sum_probs=182.3
Q ss_pred CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHh----hhceEEEcCCCcccc-
Q 000432 1276 PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL----RSRLGIIPQDPTLFD- 1350 (1513)
Q Consensus 1276 ~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~L----R~~isiVpQdp~LF~- 1350 (1513)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.|||.|+...+..++ |++++||||++.+|.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 358999999999999999999999999999999999999999999999999999998888 789999999999997
Q ss_pred CcHhhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000432 1351 GTVRGNLDPL---VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLD 1423 (1513)
Q Consensus 1351 gTIR~NLdp~---~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLD 1423 (1513)
.||++|+.+. ...+ ++++.++|+.++|.++..+.| .+||||||||++|||||+++|+||+||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5999999642 1122 356788899998877665544 479999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcCChHH
Q 000432 1424 EATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDSFF 1491 (1513)
Q Consensus 1424 EaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f 1491 (1513)
||||+||+.+.+.+++.+++.. .++|+|+|||+++.+.. ||||++|++|++++.|+|+++++++...|
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~ 225 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHH
Confidence 9999999999999999998764 37999999999998655 99999999999999999999998754333
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=373.91 Aligned_cols=214 Identities=29% Similarity=0.443 Sum_probs=186.7
Q ss_pred EEEEEEEEEEcCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHH---hh
Q 000432 1262 ISFHNLQIRYAEHL--PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHD---LR 1336 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~--~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~---LR 1336 (1513)
|+++|++++|++.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+..+ .|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997531 25999999999999999999999999999999999999999999999999998876543 47
Q ss_pred hceEEEcCCCcccc-CcHhhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHH
Q 000432 1337 SRLGIIPQDPTLFD-GTVRGNLDPL---VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFC 1408 (1513)
Q Consensus 1337 ~~isiVpQdp~LF~-gTIR~NLdp~---~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~ 1408 (1513)
++++++||+|.+|. .|+++|+... ...+ ++++.++++..++.+...+. ..+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAY-----------PAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcC-----------hhhCCHHHHHHHH
Confidence 89999999999997 5999999631 1122 34677888888876654433 3579999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHh
Q 000432 1409 LGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1409 LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~ 1485 (1513)
||||++++|++|||||||++||+.+...+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999988653 7899999999999876 99999999999999999999876
Q ss_pred c
Q 000432 1486 R 1486 (1513)
Q Consensus 1486 ~ 1486 (1513)
+
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 4
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=375.56 Aligned_cols=216 Identities=26% Similarity=0.420 Sum_probs=187.5
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
++++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999753 359999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EcCCCcccc-CcHhhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1342 IPQDPTLFD-GTVRGNLDPLV---QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1342 VpQdp~LF~-gTIR~NLdp~~---~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
+||+|.+|. .|+++|+.... ..+ ++++.++++..++.+. ......+.+||||||||++||||+
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------~~~~~~~~~LS~G~~qrv~laral 150 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA---------EFADRYPHELSGGQQQRVGVARAL 150 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH---------HHHhcChhhCCHHHHHHHHHHHHH
Confidence 999999996 69999996421 112 3456777887777530 012234568999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcC
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE 1487 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~ 1487 (1513)
+++|++|+|||||++||+++...+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++.+++
T Consensus 151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 227 (242)
T cd03295 151 AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227 (242)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCC
Confidence 999999999999999999999999999988653 7999999999998765 9999999999999999999987654
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=377.69 Aligned_cols=222 Identities=23% Similarity=0.416 Sum_probs=192.8
Q ss_pred CCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCC--C
Q 000432 1258 DVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP-----TMGSIIIDNVDITK--I 1330 (1513)
Q Consensus 1258 ~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep-----~~G~I~IDGvdI~~--i 1330 (1513)
+.+.|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 16 ~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 3468999999999964 3599999999999999999999999999999999999975 89999999999975 3
Q ss_pred ChHHhhhceEEEcCCCccccCcHhhccCCCC---CC--C----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCCh
Q 000432 1331 GLHDLRSRLGIIPQDPTLFDGTVRGNLDPLV---QY--S----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSV 1401 (1513)
Q Consensus 1331 ~l~~LR~~isiVpQdp~LF~gTIR~NLdp~~---~~--s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSg 1401 (1513)
+...+|++++++||+|.+|.+|+++|+.... .. + ++++.++++.+++.+.+.. .....+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-------RLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCH
Confidence 5667899999999999999999999996321 11 1 3457888998888765432 22345678999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecCh
Q 000432 1402 GQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSP 1480 (1513)
Q Consensus 1402 GQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp 1480 (1513)
|||||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|+++|+++.+.. ||+|++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987667899999999999966 899999999999999999
Q ss_pred hHHHhcCC
Q 000432 1481 TKLLERED 1488 (1513)
Q Consensus 1481 ~eLl~~~~ 1488 (1513)
+++..++.
T Consensus 247 ~~~~~~~~ 254 (267)
T PRK14235 247 EKMFTNPD 254 (267)
T ss_pred HHHHhCCC
Confidence 99986543
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=383.67 Aligned_cols=216 Identities=27% Similarity=0.447 Sum_probs=184.7
Q ss_pred eEEEEEEEEEEcCCC---CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCC----ChH
Q 000432 1261 TISFHNLQIRYAEHL---PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKI----GLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~---~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i----~l~ 1333 (1513)
.|+++||+++|+++. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996432 3599999999999999999999999999999999999999999999999999754 346
Q ss_pred HhhhceEEEcCCC--ccccCcHhhccCCCC---CCCH----HHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHH
Q 000432 1334 DLRSRLGIIPQDP--TLFDGTVRGNLDPLV---QYSD----KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQR 1404 (1513)
Q Consensus 1334 ~LR~~isiVpQdp--~LF~gTIR~NLdp~~---~~sd----eei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQR 1404 (1513)
.+|++|+||||+| .+|..|+++|+.+.. ..+. +++.++++.+++.. ........+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR----------DVMSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHH
Confidence 7899999999998 688899999996421 2333 33445555555531 112345678999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChh
Q 000432 1405 QLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPT 1481 (1513)
Q Consensus 1405 Qrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~ 1481 (1513)
||++|||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.. ||||++|++|++++.|+++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998864 47999999999999864 8999999999999999999
Q ss_pred HHHhc
Q 000432 1482 KLLER 1486 (1513)
Q Consensus 1482 eLl~~ 1486 (1513)
++.++
T Consensus 232 ~~~~~ 236 (286)
T PRK13646 232 ELFKD 236 (286)
T ss_pred HHHhC
Confidence 98875
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=392.00 Aligned_cols=216 Identities=26% Similarity=0.370 Sum_probs=191.5
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.++.+.+.+ |++++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 5899999999964 3589999999999999999999999999999999999999999999999999887764 67899
Q ss_pred EEcCCCcccc-CcHhhccCCC-C--CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHH
Q 000432 1341 IIPQDPTLFD-GTVRGNLDPL-V--QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRT 1412 (1513)
Q Consensus 1341 iVpQdp~LF~-gTIR~NLdp~-~--~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARA 1412 (1513)
||||++.+|. .|+++|+.+. . ..+ ++++.++++..++.++..+.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP-----------GQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 6999999742 1 122 356778888888877655443 5799999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcCCh
Q 000432 1413 LLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDS 1489 (1513)
Q Consensus 1413 LLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~~~ 1489 (1513)
|+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+.+.+.. ||||+||++|++++.|+|+++.+++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPAT 228 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 9999999999999999999999999999987654 7899999999999866 999999999999999999999988765
Q ss_pred HH
Q 000432 1490 FF 1491 (1513)
Q Consensus 1490 ~f 1491 (1513)
.|
T Consensus 229 ~~ 230 (353)
T TIGR03265 229 PF 230 (353)
T ss_pred HH
Confidence 55
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=376.58 Aligned_cols=218 Identities=29% Similarity=0.401 Sum_probs=189.3
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCC--CCChH
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP-----TMGSIIIDNVDIT--KIGLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep-----~~G~I~IDGvdI~--~i~l~ 1333 (1513)
.|+++||+++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 5899999999964 3599999999999999999999999999999999999987 4999999999997 45666
Q ss_pred HhhhceEEEcCCCccccC-cHhhccCCC---CC--CC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhH
Q 000432 1334 DLRSRLGIIPQDPTLFDG-TVRGNLDPL---VQ--YS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQ 1403 (1513)
Q Consensus 1334 ~LR~~isiVpQdp~LF~g-TIR~NLdp~---~~--~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQ 1403 (1513)
.+|++++++||+|.+|.+ |+++|+... .. .+ ++++.++++..++.+.+.. .......+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHHH
Confidence 789999999999999976 999999631 11 11 2456778888887654322 2234456899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhH
Q 000432 1404 RQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTK 1482 (1513)
Q Consensus 1404 RQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~e 1482 (1513)
|||++||||++++|++|||||||++||+++...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987677999999999999876 99999999999999999999
Q ss_pred HHhcC
Q 000432 1483 LLERE 1487 (1513)
Q Consensus 1483 Ll~~~ 1487 (1513)
+.+++
T Consensus 235 ~~~~~ 239 (253)
T PRK14267 235 VFENP 239 (253)
T ss_pred HHhCC
Confidence 98764
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=376.91 Aligned_cols=222 Identities=25% Similarity=0.471 Sum_probs=191.6
Q ss_pred CCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCC--
Q 000432 1257 PDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PTMGSIIIDNVDITK-- 1329 (1513)
Q Consensus 1257 p~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e-----p~~G~I~IDGvdI~~-- 1329 (1513)
|....|+++||+++|++ ..+|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.++..
T Consensus 9 ~~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 9 SKNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred CCCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 33457999999999975 359999999999999999999999999999999999988 689999999999863
Q ss_pred CChHHhhhceEEEcCCCccccCcHhhccCCCC---CC---CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhH
Q 000432 1330 IGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLV---QY---SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQ 1403 (1513)
Q Consensus 1330 i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~~---~~---sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQ 1403 (1513)
.+..++|++++|+||+|.+|..|+++|+.... .. .++++.++++.+++.+.+. ........+||+||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 159 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQ 159 (269)
T ss_pred CCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHH
Confidence 56678899999999999999999999997532 11 2355677888887754332 22344456899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeC-----------
Q 000432 1404 RQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSD----------- 1471 (1513)
Q Consensus 1404 RQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~----------- 1471 (1513)
|||++|||||+++|+||+|||||++||+.+...+.+.|++..+++|+|+++|+++.+.+ ||+|++|++
T Consensus 160 ~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEecccccccccccc
Confidence 99999999999999999999999999999999999999988677899999999999866 999999996
Q ss_pred CEEeEecChhHHHhcC
Q 000432 1472 GRIAEYDSPTKLLERE 1487 (1513)
Q Consensus 1472 G~IvE~Gtp~eLl~~~ 1487 (1513)
|+++|.|+++++.+++
T Consensus 240 g~~~~~~~~~~~~~~~ 255 (269)
T PRK14259 240 GYLVEFNETKKIFNSP 255 (269)
T ss_pred ceEEEeCCHHHHHhCc
Confidence 6799999999998754
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=382.85 Aligned_cols=214 Identities=25% Similarity=0.405 Sum_probs=185.7
Q ss_pred EEEEEEEEEEcCCC---CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCC----CChHH
Q 000432 1262 ISFHNLQIRYAEHL---PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITK----IGLHD 1334 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~---~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~----i~l~~ 1334 (1513)
|+++||+++|+++. +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997543 259999999999999999999999999999999999999999999999999863 34667
Q ss_pred hhhceEEEcCCC--ccccCcHhhccCCCC---CCCH----HHHHHHHHHcCCc-HHHHhhhccccchhccCCCCCChhHH
Q 000432 1335 LRSRLGIIPQDP--TLFDGTVRGNLDPLV---QYSD----KQVWEALDKCQLG-DLVRAKEEKLDSTVAENGENWSVGQR 1404 (1513)
Q Consensus 1335 LR~~isiVpQdp--~LF~gTIR~NLdp~~---~~sd----eei~~aL~~~~l~-~~I~~lp~gLdt~V~e~G~nLSgGQR 1404 (1513)
+|++++||+|+| .+|..|+.+|+.+.. ..+. +++.++++.+++. ++.. ....+||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE-----------KSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc-----------CCcccCCHHHH
Confidence 899999999998 799999999996431 1222 3466778888874 2322 33468999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhH
Q 000432 1405 QLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTK 1482 (1513)
Q Consensus 1405 Qrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~e 1482 (1513)
||++|||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+.. ||||++|++|++++.|+|++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998764 47899999999998854 99999999999999999999
Q ss_pred HHhc
Q 000432 1483 LLER 1486 (1513)
Q Consensus 1483 Ll~~ 1486 (1513)
+.++
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8764
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=375.28 Aligned_cols=467 Identities=20% Similarity=0.184 Sum_probs=333.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccccChh------HHHHHHhcchHHHhHH
Q 000432 981 NIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTG------RILNRASNDQSVLDLE 1054 (1513)
Q Consensus 981 ~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~~~G------~ilnR~s~D~~~id~~ 1054 (1513)
...+.+|.+++.+...+...+.++...+..+.-..|-+.++++-+.-. .||.....| ..=.|+..|+...-..
T Consensus 86 ~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~ 164 (604)
T COG4178 86 WQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTET 164 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhh
Confidence 455678888888888888889999888888888888888888888776 555444343 2336888888776655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH---------------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 1055 LAGRLGWCAFSIIQILGTIGVMSQVAW---------------QVFVIFIPVT----GICIWYQQYYIPTARELARLAEIQ 1115 (1513)
Q Consensus 1055 l~~~l~~~~~~~~~~~~~l~v~~~~~~---------------~l~lv~ip~~----~l~~~~~~~y~~~~r~l~rl~~~~ 1115 (1513)
-......++.++++++...+++...+- .+..+++... ++..++.+...+-.-+..+.+..-
T Consensus 165 t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~f 244 (604)
T COG4178 165 TLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADF 244 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHH
Confidence 555555666666666655555442211 1111111111 222344455555555555666555
Q ss_pred hchHHHHHHHHHchHHHHHHhchHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCcc
Q 000432 1116 RAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVV-LVTLPEGII 1194 (1513)
Q Consensus 1116 ~s~~~~~~~Etl~Gi~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~-~~~~~~g~i 1194 (1513)
|..+ .-.-+....|-.|+.|+.-.++..+..+.-.+.+......+.++...-...+-+.+.+-.+. +-.+..|.+
T Consensus 245 R~~L----vrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i 320 (604)
T COG4178 245 RYSL----VRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQI 320 (604)
T ss_pred HHHH----HHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcC
Confidence 5443 33445667788888887665555555554444444444444444333333222222111111 112347889
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCCCCCcccCCCCCCCCCCCceEEEEEEE
Q 000432 1195 NPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSN------LPSEAPLVTEECRPPSNWPDVGTISFHNLQ 1268 (1513)
Q Consensus 1195 ~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~e~~~------~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs 1268 (1513)
+-|.+..+.+...++...+.|++..+..+..-...+.|+.++.+ .+++.+.... .+-...-.....|+|+|++
T Consensus 321 ~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~ 399 (604)
T COG4178 321 TFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLS 399 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeee
Confidence 99999999999999999999999999999999999999998863 2222211100 0000000014689999999
Q ss_pred EEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEcCCCcc
Q 000432 1269 IRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTL 1348 (1513)
Q Consensus 1269 f~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~L 1348 (1513)
..-+++. ..|++.||+|+|||.+-|.|+||||||||+++|.|+.+--+|+|.+-. -+++-++||.|++
T Consensus 400 l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~ 467 (604)
T COG4178 400 LRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYL 467 (604)
T ss_pred EECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCC
Confidence 9987665 689999999999999999999999999999999999999999987641 1457899999999
Q ss_pred ccCcHhhccC-CCC--CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecC
Q 000432 1349 FDGTVRGNLD-PLV--QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEA 1425 (1513)
Q Consensus 1349 F~gTIR~NLd-p~~--~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEa 1425 (1513)
-.||+||=|. |.. +++|+|+.++|.+|+|.++++++.+--+ -..-||+||||||++||.+|++||+++||||
T Consensus 468 p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEA 542 (604)
T COG4178 468 PQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEA 542 (604)
T ss_pred CCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecc
Confidence 9999999996 443 3899999999999999999998754322 3456999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEe
Q 000432 1426 TASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLS 1470 (1513)
Q Consensus 1426 TSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd 1470 (1513)
||+||.++|..+.+.++++.+++|+|.|+||-....-.++.+-++
T Consensus 543 TsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 543 TSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred hhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 999999999999999999999999999999977766677766554
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=373.98 Aligned_cols=222 Identities=28% Similarity=0.445 Sum_probs=192.4
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCCCChHHh
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP-----TMGSIIIDNVDITKIGLHDL 1335 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep-----~~G~I~IDGvdI~~i~l~~L 1335 (1513)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4899999999965 3599999999999999999999999999999999999974 69999999999998888889
Q ss_pred hhceEEEcCCCccc-cCcHhhccCCCC---C------CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHH
Q 000432 1336 RSRLGIIPQDPTLF-DGTVRGNLDPLV---Q------YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405 (1513)
Q Consensus 1336 R~~isiVpQdp~LF-~gTIR~NLdp~~---~------~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQ 1405 (1513)
|++++|+||+|.+| +.|+++|+.... . ..++++.++++.+++.+.+. +.+|.. ..+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~----~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK---DRLDAP----AGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---hhhcCC----cccCCHHHHH
Confidence 99999999999755 679999996321 1 11356788999998865432 223433 4579999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1406 rl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
|++||||++++|+||+|||||++||+.+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999987678999999999999865 9999999999999999999998
Q ss_pred hcCChHH
Q 000432 1485 EREDSFF 1491 (1513)
Q Consensus 1485 ~~~~~~f 1491 (1513)
+++...+
T Consensus 234 ~~~~~~~ 240 (250)
T PRK14247 234 TNPRHEL 240 (250)
T ss_pred cCCccHH
Confidence 7654333
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=381.21 Aligned_cols=214 Identities=28% Similarity=0.456 Sum_probs=187.5
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCC--CCChHHhhhc
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDIT--KIGLHDLRSR 1338 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~--~i~l~~LR~~ 1338 (1513)
.|+++||+++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+. ..+..++|++
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 59999999999633 35999999999999999999999999999999999999999999999999984 3456778999
Q ss_pred eEEEcCCC--ccccCcHhhccCCC---CCCCH----HHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHH
Q 000432 1339 LGIIPQDP--TLFDGTVRGNLDPL---VQYSD----KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCL 1409 (1513)
Q Consensus 1339 isiVpQdp--~LF~gTIR~NLdp~---~~~sd----eei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~L 1409 (1513)
++|+||+| .+|+.|+++|+... ...+. +++.++++.+++.++. .....+||||||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHHH
Confidence 99999998 57899999999642 12232 3467778888876543 23456899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhc
Q 000432 1410 GRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1410 ARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
||||+.+|+||||||||++||+++...+.+.|++..+ ++|||+++|+++.+.. ||||++|++|++++.|+++++++.
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999988754 7999999999999974 999999999999999999998874
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=374.84 Aligned_cols=211 Identities=29% Similarity=0.425 Sum_probs=183.0
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCh---HHhhhc
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGL---HDLRSR 1338 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l---~~LR~~ 1338 (1513)
|+++||+++|+.+ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++..++. ..+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 6899999999723 459999999999999999999999999999999999999999999999999987654 447889
Q ss_pred eEEEcCCCcccc-CcHhhccCCCC---------------CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChh
Q 000432 1339 LGIIPQDPTLFD-GTVRGNLDPLV---------------QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVG 1402 (1513)
Q Consensus 1339 isiVpQdp~LF~-gTIR~NLdp~~---------------~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgG 1402 (1513)
++++||++.+|. .|+++|+.... ...++++.++++..++.+... ....+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHH
Confidence 999999999886 59999996311 011345677777777754432 345689999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecC
Q 000432 1403 QRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDS 1479 (1513)
Q Consensus 1403 QRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gt 1479 (1513)
||||++|||||+++|+||+|||||++||+++.+.+.+.|++.. .++|+|+|+|+++.+.+ ||+|++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999998864 27899999999999865 99999999999999999
Q ss_pred hhHHH
Q 000432 1480 PTKLL 1484 (1513)
Q Consensus 1480 p~eLl 1484 (1513)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 99873
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=367.91 Aligned_cols=202 Identities=26% Similarity=0.400 Sum_probs=176.1
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++++.+ ..|++++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence 578999999964 35999999999999999999999999999999999999999999999999998654 35778999
Q ss_pred EcCCCcccc-CcHhhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1342 IPQDPTLFD-GTVRGNLDPLV---QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1342 VpQdp~LF~-gTIR~NLdp~~---~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
+||+|.+|. .|+++|+.... ..+ ++++.++++..++.++..+.| .+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-----------HELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999886 59999996321 112 345777888888776544433 47999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEec
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYD 1478 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~G 1478 (1513)
+++|++|+|||||++||+++...+.+.|++.. .++|||+++|+++.+.+ ||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999998864 37899999999998866 9999999999999875
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=405.12 Aligned_cols=199 Identities=24% Similarity=0.323 Sum_probs=169.0
Q ss_pred CCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC--CCCcEEEEcCeeCCCCChHHhhhceEEEcCCCc-ccc
Q 000432 1274 HLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE--PTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPT-LFD 1350 (1513)
Q Consensus 1274 ~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e--p~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~-LF~ 1350 (1513)
+....|+|||=-++||.-+|++|.||||||||++.|.+-.+ ..+|+|+|||.+..+ +..++++|||-|++. +=+
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 44568999999999999999999999999999999998753 357999999998865 789999999999775 556
Q ss_pred CcHhhccCC------CCCCCHHH----HHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCC-CE
Q 000432 1351 GTVRGNLDP------LVQYSDKQ----VWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKS-SI 1419 (1513)
Q Consensus 1351 gTIR~NLdp------~~~~sdee----i~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~-~I 1419 (1513)
-||||-|.+ -.+.+++| +.++.+..+|++. =|..||.-|..||..||.|+.||=-|+.|| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 699999853 12445544 4566666666654 357799999999999999999999999999 89
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhH--hhcCEEEEEe-CCEEeEecChhH
Q 000432 1420 LVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTV--IDSDLVLVLS-DGRIAEYDSPTK 1482 (1513)
Q Consensus 1420 LiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti--~~~DrIlVLd-~G~IvE~Gtp~e 1482 (1513)
|.||||||+||+++...|.+.+|+.. .|+||++.=|..+.. +.+|+++.|+ .|+.|-+|+..+
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999999999999875 699999999998863 5699999997 579999988654
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=377.63 Aligned_cols=215 Identities=28% Similarity=0.468 Sum_probs=189.1
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++|++++|+++..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 59999999999744456999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcCCC--ccccCcHhhccCCC---CCCCHH----HHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHH
Q 000432 1341 IIPQDP--TLFDGTVRGNLDPL---VQYSDK----QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGR 1411 (1513)
Q Consensus 1341 iVpQdp--~LF~gTIR~NLdp~---~~~sde----ei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LAR 1411 (1513)
|+||+| .++..|+++|+... ...+++ .+.++++..++.++..+. ..+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-----------PQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------cccCCHHHHHHHHHHH
Confidence 999998 45678999999642 123333 356677777776654433 3689999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhc
Q 000432 1412 TLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1412 ALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
||+++|++|+|||||++||..+.+.+.+.|++..+ ++|+|+++|+++.+..||+|++|++|++++.|+++++.++
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999988653 4899999999999988999999999999999999998765
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=372.26 Aligned_cols=212 Identities=27% Similarity=0.430 Sum_probs=182.8
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHh-hhceE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL-RSRLG 1340 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~L-R~~is 1340 (1513)
|+++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 578999999964 359999999999999999999999999999999999999999999999999998877664 57799
Q ss_pred EEcCCCccccC-cHhhccCCCC----CC-------------CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChh
Q 000432 1341 IIPQDPTLFDG-TVRGNLDPLV----QY-------------SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVG 1402 (1513)
Q Consensus 1341 iVpQdp~LF~g-TIR~NLdp~~----~~-------------sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgG 1402 (1513)
++||+|.+|.+ |+++|+.... .. .++++.++++..++.+. .......||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG 147 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL-----------ADRPAGELSYG 147 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccch-----------hhCChhhCCHH
Confidence 99999999987 9999996321 10 12234555666655432 33345679999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecCh
Q 000432 1403 QRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSP 1480 (1513)
Q Consensus 1403 QRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp 1480 (1513)
||||++||||++++|++|+|||||++||..+.+.+.+.|++.. +++|+|+++|+++.+.. ||+|++|++|++++.|++
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 227 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTP 227 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCH
Confidence 9999999999999999999999999999999999999998765 67899999999999977 999999999999999999
Q ss_pred hHHHhc
Q 000432 1481 TKLLER 1486 (1513)
Q Consensus 1481 ~eLl~~ 1486 (1513)
+++.++
T Consensus 228 ~~~~~~ 233 (236)
T cd03219 228 DEVRNN 233 (236)
T ss_pred HHhccC
Confidence 998764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=388.28 Aligned_cols=216 Identities=26% Similarity=0.410 Sum_probs=189.9
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+. .|++++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 4899999999965 359999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEcCCCccccC-cHhhccCCCC-------CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHH
Q 000432 1341 IIPQDPTLFDG-TVRGNLDPLV-------QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFC 1408 (1513)
Q Consensus 1341 iVpQdp~LF~g-TIR~NLdp~~-------~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~ 1408 (1513)
||||++.+|.. |+++|+.+.. ..+ ++++.++++..++.++..+.| ..||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 99999999975 9999997421 122 346778889898876654443 479999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHh
Q 000432 1409 LGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1409 LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~ 1485 (1513)
|||||+++|++|+||||||+||..+...+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|+|++.|+|+++.+
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988754 6899999999999776 99999999999999999999998
Q ss_pred cCChHH
Q 000432 1486 REDSFF 1491 (1513)
Q Consensus 1486 ~~~~~f 1491 (1513)
++...|
T Consensus 227 ~p~~~~ 232 (353)
T PRK10851 227 EPATRF 232 (353)
T ss_pred CccchH
Confidence 765443
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=379.54 Aligned_cols=217 Identities=25% Similarity=0.374 Sum_probs=187.4
Q ss_pred EEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHh----hhc
Q 000432 1263 SFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL----RSR 1338 (1513)
Q Consensus 1263 ~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~L----R~~ 1338 (1513)
.++|++.+|++. ++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQT--VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCCc--eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 466888888643 58999999999999999999999999999999999999999999999999988776554 468
Q ss_pred eEEEcCCCcccc-CcHhhccCCC---CCC----CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHH
Q 000432 1339 LGIIPQDPTLFD-GTVRGNLDPL---VQY----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLG 1410 (1513)
Q Consensus 1339 isiVpQdp~LF~-gTIR~NLdp~---~~~----sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LA 1410 (1513)
++++||++.+|. .|+++|+... ... .++++.++++.+++.++..+.| .+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 999999999985 6999999631 111 2345778888888877665544 36999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcC
Q 000432 1411 RTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE 1487 (1513)
Q Consensus 1411 RALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~ 1487 (1513)
||++++|+||||||||++||+.+.+.+.+.|++.. .++|+|+++|+++.+.. ||+|++|++|++++.|+++++++++
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999998764 37999999999999865 9999999999999999999998765
Q ss_pred ChHHH
Q 000432 1488 DSFFS 1492 (1513)
Q Consensus 1488 ~~~f~ 1492 (1513)
...|.
T Consensus 253 ~~~~~ 257 (269)
T cd03294 253 ANDYV 257 (269)
T ss_pred CcHHH
Confidence 54443
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=374.20 Aligned_cols=219 Identities=24% Similarity=0.415 Sum_probs=188.6
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCC--CChH
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PTMGSIIIDNVDITK--IGLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e-----p~~G~I~IDGvdI~~--i~l~ 1333 (1513)
.|+++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 5899999999964 359999999999999999999999999999999999997 479999999999864 3456
Q ss_pred HhhhceEEEcCCCccccCcHhhccCCCC---CC-----CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHH
Q 000432 1334 DLRSRLGIIPQDPTLFDGTVRGNLDPLV---QY-----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405 (1513)
Q Consensus 1334 ~LR~~isiVpQdp~LF~gTIR~NLdp~~---~~-----sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQ 1405 (1513)
.+|+.++++||++.+|++|+++|+.+.. .. .++++.++++.+++++.. +..+ .....+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~----~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---KDNL----DRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---HHHh----ccChhhCCHHHHH
Confidence 6788999999999999999999996421 11 234567778888775321 1122 3345689999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1406 rl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
|++||||++++|++|||||||++||+++...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987777999999999999876 9999999999999999999998
Q ss_pred hcCC
Q 000432 1485 ERED 1488 (1513)
Q Consensus 1485 ~~~~ 1488 (1513)
..+.
T Consensus 235 ~~~~ 238 (251)
T PRK14251 235 IAPK 238 (251)
T ss_pred hCCC
Confidence 6644
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=375.64 Aligned_cols=221 Identities=25% Similarity=0.428 Sum_probs=190.8
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCCCC--hHH
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PTMGSIIIDNVDITKIG--LHD 1334 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e-----p~~G~I~IDGvdI~~i~--l~~ 1334 (1513)
=+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|.|++. |++|+|.+||.++.+.+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 478999999964 369999999999999999999999999999999999986 47999999999987653 346
Q ss_pred hhhceEEEcCCCccccCcHhhccCCC---CC------CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHH
Q 000432 1335 LRSRLGIIPQDPTLFDGTVRGNLDPL---VQ------YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405 (1513)
Q Consensus 1335 LR~~isiVpQdp~LF~gTIR~NLdp~---~~------~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQ 1405 (1513)
+|++++|+||++.+|.+|+++|+... .. ..++++.++++..++.+.+. +.+...+.+|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHHH
Confidence 78999999999999999999999632 11 12345778889888865432 2234456789999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1406 rl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
|++||||++++|+||+|||||++||..+.+.+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988778999999999999876 9999999999999999999998
Q ss_pred hcCChHH
Q 000432 1485 EREDSFF 1491 (1513)
Q Consensus 1485 ~~~~~~f 1491 (1513)
+.+...+
T Consensus 237 ~~~~~~~ 243 (251)
T PRK14244 237 KNPQSSK 243 (251)
T ss_pred cCCCChH
Confidence 7765544
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=374.58 Aligned_cols=219 Identities=24% Similarity=0.433 Sum_probs=192.2
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCC--CCh
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PTMGSIIIDNVDITK--IGL 1332 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e-----p~~G~I~IDGvdI~~--i~l 1332 (1513)
..|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 36999999999964 359999999999999999999999999999999999997 589999999999864 346
Q ss_pred HHhhhceEEEcCCCccccCcHhhccCCC----CCC----CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHH
Q 000432 1333 HDLRSRLGIIPQDPTLFDGTVRGNLDPL----VQY----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQR 1404 (1513)
Q Consensus 1333 ~~LR~~isiVpQdp~LF~gTIR~NLdp~----~~~----sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQR 1404 (1513)
..+|+.++++||++.+|.+|+++|+... +.. .++++.++++.+++.+.+. ........+||||||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGGQQ 169 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHHHH
Confidence 6789999999999999999999999642 111 2345778888888876553 233456678999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHH
Q 000432 1405 QLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKL 1483 (1513)
Q Consensus 1405 Qrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eL 1483 (1513)
||++||||++++|++|+|||||++||..+...+.+.|++..++.|+|+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999866 999999999999999999999
Q ss_pred HhcC
Q 000432 1484 LERE 1487 (1513)
Q Consensus 1484 l~~~ 1487 (1513)
.+.+
T Consensus 250 ~~~~ 253 (267)
T PRK14237 250 FTNP 253 (267)
T ss_pred hcCC
Confidence 8754
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=370.01 Aligned_cols=208 Identities=25% Similarity=0.362 Sum_probs=181.3
Q ss_pred eEEEEEEEEEEcCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHH---h
Q 000432 1261 TISFHNLQIRYAEHL--PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHD---L 1335 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~--~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~---L 1335 (1513)
.++++||+++|+++. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++..++.+. +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997532 36999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-hceEEEcCCCccccC-cHhhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHH
Q 000432 1336 R-SRLGIIPQDPTLFDG-TVRGNLDPL---VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQL 1406 (1513)
Q Consensus 1336 R-~~isiVpQdp~LF~g-TIR~NLdp~---~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQr 1406 (1513)
| ++++|+||+|.+|.+ |+++|+... ...+ ++++.++++..++.+...+ ...+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANH-----------RPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHH
Confidence 3 679999999999975 999999641 1222 3457788888887654433 335799999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhcCEEEEEeCCEEeEecC
Q 000432 1407 FCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDS 1479 (1513)
Q Consensus 1407 l~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gt 1479 (1513)
++||||++++|+||+|||||++||+++...+.+.|++.. +++|+|+|+|+++.+..+|++++|++|+|++.++
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998863 4799999999999999999999999999998775
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=373.24 Aligned_cols=219 Identities=26% Similarity=0.431 Sum_probs=189.8
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc---CCC--CCcEEEEcCeeCCCC--ChH
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRI---VEP--TMGSIIIDNVDITKI--GLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl---~ep--~~G~I~IDGvdI~~i--~l~ 1333 (1513)
.|+++|++++|++ ..+|+|+||+|++||.+||+|++|||||||+++|.|+ ++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5899999999965 3599999999999999999999999999999999997 444 589999999999764 346
Q ss_pred HhhhceEEEcCCCccccCcHhhccCCC---CC-----CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHH
Q 000432 1334 DLRSRLGIIPQDPTLFDGTVRGNLDPL---VQ-----YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405 (1513)
Q Consensus 1334 ~LR~~isiVpQdp~LF~gTIR~NLdp~---~~-----~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQ 1405 (1513)
.+|++++|+||+|.+|.+|+++|+... .. ..+++++++++.+++.+.+.. .....+.+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD-------KLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhh-------hhhCCcccCCHHHHH
Confidence 788999999999999999999999631 11 123467788888888655432 233456789999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1406 rl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
|++||||++++|+||||||||++||+.+...+.+.|++..+++|||+|+|+++.+.. ||||++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999988778999999999999866 9999999999999999999998
Q ss_pred hcCC
Q 000432 1485 ERED 1488 (1513)
Q Consensus 1485 ~~~~ 1488 (1513)
+++.
T Consensus 234 ~~~~ 237 (250)
T PRK14245 234 TNPE 237 (250)
T ss_pred cCCC
Confidence 7643
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=354.78 Aligned_cols=178 Identities=35% Similarity=0.595 Sum_probs=167.3
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++|++++|+...+++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 579999999976434699999999999999999999999999999999999999999999999998876 6678999999
Q ss_pred EcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000432 1342 IPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILV 1421 (1513)
Q Consensus 1342 VpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILi 1421 (1513)
+||+|.+|++|+++|+ ..+||+|||||++||||++++|++|+
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997 46799999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCEEeEec
Q 000432 1422 LDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYD 1478 (1513)
Q Consensus 1422 LDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~G 1478 (1513)
|||||++||.++.+.+.+.|++..+++|+|+++|+++.+..||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999887789999999999999899999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=369.44 Aligned_cols=212 Identities=25% Similarity=0.416 Sum_probs=179.4
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHh-hhceE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL-RSRLG 1340 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~L-R~~is 1340 (1513)
|+++||+++|+.. ++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+..+. |++++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCCe--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 5799999999643 59999999999999999999999999999999999999999999999999988877664 67899
Q ss_pred EEcCCCccccC-cHhhccCCCCC-CC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHc
Q 000432 1341 IIPQDPTLFDG-TVRGNLDPLVQ-YS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLL 1414 (1513)
Q Consensus 1341 iVpQdp~LF~g-TIR~NLdp~~~-~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALL 1414 (1513)
|+||++.+|.+ |+++|+..... .. .+++.++++..+ +++........+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP----------RLKERRKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH----------hhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence 99999999987 99999964321 11 112223333321 1222333445679999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHh
Q 000432 1415 KKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1415 r~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~ 1485 (1513)
++|++|+|||||++||.++...+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999998765 47899999999999876 99999999999999999988764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=384.27 Aligned_cols=226 Identities=22% Similarity=0.328 Sum_probs=191.0
Q ss_pred eEEEEEEEEEEcCC-----------CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCC
Q 000432 1261 TISFHNLQIRYAEH-----------LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITK 1329 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~-----------~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~ 1329 (1513)
-|+++|++++|+.+ ...+++||||+|++||.+||||+||||||||+++|+|+++|++|+|.+||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 59999999999631 2359999999999999999999999999999999999999999999999999998
Q ss_pred CChHH---hhhceEEEcCCC--ccc-cCcHhhccCC----C-CCCCH----HHHHHHHHHcCCcHHHHhhhccccchhcc
Q 000432 1330 IGLHD---LRSRLGIIPQDP--TLF-DGTVRGNLDP----L-VQYSD----KQVWEALDKCQLGDLVRAKEEKLDSTVAE 1394 (1513)
Q Consensus 1330 i~l~~---LR~~isiVpQdp--~LF-~gTIR~NLdp----~-~~~sd----eei~~aL~~~~l~~~I~~lp~gLdt~V~e 1394 (1513)
++.++ +|++++|||||| .|| ..||++|+.. . ...+. +.+.++++.+++.+.+ + ..
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~------~----~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNL------I----NR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH------h----cC
Confidence 87654 678999999999 477 5799999852 1 12343 3456678888874311 1 22
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeC
Q 000432 1395 NGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSD 1471 (1513)
Q Consensus 1395 ~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~ 1471 (1513)
...+||||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 3457999999999999999999999999999999999999999999987643 7899999999999986 999999999
Q ss_pred CEEeEecChhHHHhcCChHHHH-HHH
Q 000432 1472 GRIAEYDSPTKLLEREDSFFSQ-LIK 1496 (1513)
Q Consensus 1472 G~IvE~Gtp~eLl~~~~~~f~~-l~~ 1496 (1513)
|+|+|.|+++++++++...|.+ ++.
T Consensus 238 G~ive~g~~~~i~~~~~~py~~~l~~ 263 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTKALMS 263 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHHHHHh
Confidence 9999999999999876555554 444
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=371.87 Aligned_cols=239 Identities=38% Similarity=0.664 Sum_probs=205.3
Q ss_pred HHHHHHhcccccccccccccCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcC
Q 000432 604 DRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 604 ~RI~~fL~~~e~~~~~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~ 683 (1513)
+.+.+.|..+..+++. . +.......|+++|+++.+ +++|+|+||+|++|++++|+|+||||||||+++|+|+
T Consensus 15 ~~~~~~~~~~~~~~~~-~--~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 15 EGFGELLEKAKQENND-R--KHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHHhcccccccc-c--ccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456666554432221 1 222345679999999962 4699999999999999999999999999999999999
Q ss_pred ccCCCcEEEECCeEEEEcCCCcccCccHHHHHccCCCCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHH
Q 000432 684 IQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQ 763 (1513)
Q Consensus 684 ~~~~~G~i~~~g~~ayv~Q~~~l~~~ti~eNI~fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkq 763 (1513)
++|.+|+|.++|.++|++|++++++.|++||+.++....+.++.+.++++.+.+.++.+|.+.+|.+++++.+|||||||
T Consensus 87 ~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~q 166 (282)
T cd03291 87 LEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRA 166 (282)
T ss_pred CCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHH
Confidence 99999999999999999999999999999999998655555667778888888888999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHH
Q 000432 764 RIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELL 843 (1513)
Q Consensus 764 Ri~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~ 843 (1513)
|++||||++++|+++||||||++||+.+.+.+.+.++..+.+++|+|++||+++.++.||+|++|++|++++.|+++++.
T Consensus 167 rv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 167 RISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999998777765555555689999999999998889999999999999999999987
Q ss_pred hcCccHH
Q 000432 844 KQNIGFE 850 (1513)
Q Consensus 844 ~~~~~~~ 850 (1513)
+....|.
T Consensus 247 ~~~~~~~ 253 (282)
T cd03291 247 SLRPDFS 253 (282)
T ss_pred hcchHHH
Confidence 6544443
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=372.53 Aligned_cols=223 Identities=26% Similarity=0.448 Sum_probs=191.9
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCCC--ChH
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP-----TMGSIIIDNVDITKI--GLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep-----~~G~I~IDGvdI~~i--~l~ 1333 (1513)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999964 3599999999999999999999999999999999999984 899999999998753 345
Q ss_pred HhhhceEEEcCCCccccCcHhhccCCC----CCC----CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHH
Q 000432 1334 DLRSRLGIIPQDPTLFDGTVRGNLDPL----VQY----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405 (1513)
Q Consensus 1334 ~LR~~isiVpQdp~LF~gTIR~NLdp~----~~~----sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQ 1405 (1513)
.+|++++++||+|.+|..|+++|+... +.. .++++.++++..++.+.+.. .......+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHHH
Confidence 678999999999999999999999642 111 23456778888888654422 234556789999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1406 rl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
|++||||++++|+||+|||||++||..+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999987778999999999998765 9999999999999999999998
Q ss_pred hcCChHHH
Q 000432 1485 EREDSFFS 1492 (1513)
Q Consensus 1485 ~~~~~~f~ 1492 (1513)
+++...|.
T Consensus 234 ~~~~~~~~ 241 (250)
T PRK14262 234 ERPKNKLT 241 (250)
T ss_pred hCCCChHH
Confidence 76443343
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=388.28 Aligned_cols=217 Identities=25% Similarity=0.401 Sum_probs=192.8
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhce
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~i 1339 (1513)
..|+++|++++|.. ..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++..++.+ ++++
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 36999999999964 3589999999999999999999999999999999999999999999999999887664 5789
Q ss_pred EEEcCCCccccC-cHhhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHH
Q 000432 1340 GIIPQDPTLFDG-TVRGNLDPLV---QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGR 1411 (1513)
Q Consensus 1340 siVpQdp~LF~g-TIR~NLdp~~---~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LAR 1411 (1513)
++|+|++.||.. ||++||.+.- ..+ ++++.++++..++.++..+.| .+||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999965 9999997421 222 345778899999988777666 468999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcCC
Q 000432 1412 TLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERED 1488 (1513)
Q Consensus 1412 ALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~~ 1488 (1513)
||+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+.+.+.. ||+|+||++|+|++.|+|+++.+++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988754 7899999999998765 99999999999999999999998876
Q ss_pred hHH
Q 000432 1489 SFF 1491 (1513)
Q Consensus 1489 ~~f 1491 (1513)
..|
T Consensus 238 ~~~ 240 (375)
T PRK09452 238 NLF 240 (375)
T ss_pred cHH
Confidence 444
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=369.01 Aligned_cols=211 Identities=25% Similarity=0.379 Sum_probs=182.7
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++.+.+.+. +++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEE
Confidence 789999999964 35999999999999999999999999999999999999999999999999998776544 468999
Q ss_pred EcCCCcc-ccCcHhhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1342 IPQDPTL-FDGTVRGNLDPLV---QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1342 VpQdp~L-F~gTIR~NLdp~~---~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
+||++.+ +..|+++|+.... ..+ ++++.+.++..++.+. ......+||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAER-----------ADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 9999987 5679999996421 122 2345566666655432 3344568999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhc
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
+++|+||+|||||++||+++.+.+.+.|++.. +++|+|+++|+++.+..||+|++|++|++++.|+++++.++
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999998875 37899999999999988999999999999999999999865
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=372.75 Aligned_cols=219 Identities=26% Similarity=0.409 Sum_probs=188.7
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC--C---CCcEEEEcCeeCCCC--ChH
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE--P---TMGSIIIDNVDITKI--GLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e--p---~~G~I~IDGvdI~~i--~l~ 1333 (1513)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 5899999999964 359999999999999999999999999999999999954 6 499999999999753 345
Q ss_pred HhhhceEEEcCCCccccCcHhhccCCC----CC----CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHH
Q 000432 1334 DLRSRLGIIPQDPTLFDGTVRGNLDPL----VQ----YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405 (1513)
Q Consensus 1334 ~LR~~isiVpQdp~LF~gTIR~NLdp~----~~----~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQ 1405 (1513)
.+|++++++||+|.+|+.|+++|+... +. ..++++.++++.+++.+.+. +.......+||+||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHHH
Confidence 678899999999999999999999631 11 12345667888888765443 2234456789999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1406 rl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
|++||||++++|+||||||||++||.++...+.+.|++..+++|+|+|+|+++.+.. ||||++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999998866 9999999999999999999998
Q ss_pred hcCC
Q 000432 1485 ERED 1488 (1513)
Q Consensus 1485 ~~~~ 1488 (1513)
+++.
T Consensus 236 ~~~~ 239 (252)
T PRK14239 236 MNPK 239 (252)
T ss_pred hCCC
Confidence 7643
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=388.35 Aligned_cols=218 Identities=24% Similarity=0.398 Sum_probs=192.4
Q ss_pred CceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCC--cEEEEcCeeCCCCChHHhh
Q 000432 1259 VGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTM--GSIIIDNVDITKIGLHDLR 1336 (1513)
Q Consensus 1259 ~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~--G~I~IDGvdI~~i~l~~LR 1336 (1513)
.|.|+++||+++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++ |+|.+||.++...+. .+
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 478999999999974 359999999999999999999999999999999999999999 999999999987665 35
Q ss_pred hceEEEcCCCccccC-cHhhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHH
Q 000432 1337 SRLGIIPQDPTLFDG-TVRGNLDPL---VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFC 1408 (1513)
Q Consensus 1337 ~~isiVpQdp~LF~g-TIR~NLdp~---~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~ 1408 (1513)
+++++|+|++.||.. |+++||.+. ...+ ++++.++++.+++.++..+.| .+||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 789999999999966 999999742 1223 245777888888887766555 378999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC---CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1409 LGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK---DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1409 LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~---~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
|||||+++|++|+||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||||+||++|++++.|+|+++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999987654 6899999999999866 9999999999999999999999
Q ss_pred hcCChHH
Q 000432 1485 EREDSFF 1491 (1513)
Q Consensus 1485 ~~~~~~f 1491 (1513)
+++...|
T Consensus 228 ~~p~~~~ 234 (362)
T TIGR03258 228 DAPADGF 234 (362)
T ss_pred hCcCcHH
Confidence 8865544
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=373.98 Aligned_cols=222 Identities=27% Similarity=0.420 Sum_probs=190.1
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCCC--Ch
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP-----TMGSIIIDNVDITKI--GL 1332 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep-----~~G~I~IDGvdI~~i--~l 1332 (1513)
..|+++|++++|++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 11 ~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 11 PQIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eeEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 36999999999964 3599999999999999999999999999999999999985 799999999998753 34
Q ss_pred HHhhhceEEEcCCCccccCcHhhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHH
Q 000432 1333 HDLRSRLGIIPQDPTLFDGTVRGNLDPL---VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405 (1513)
Q Consensus 1333 ~~LR~~isiVpQdp~LF~gTIR~NLdp~---~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQ 1405 (1513)
..+|++++|+||++.+|..|+++|+... ...+ ++++.++++.+++.+.+. ..++ ....+|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~----~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLK----SPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhc----CChhhCCHHHHH
Confidence 5678899999999999999999999632 1222 234677888888754321 2233 345679999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1406 rl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
|++|||||+++|+||+|||||++||.++...+.+.|++..+++|+|+|+|+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987668999999999999876 9999999999999999999998
Q ss_pred hcCChH
Q 000432 1485 EREDSF 1490 (1513)
Q Consensus 1485 ~~~~~~ 1490 (1513)
+++...
T Consensus 242 ~~~~~~ 247 (258)
T PRK14268 242 HNPREK 247 (258)
T ss_pred cCCCCH
Confidence 764433
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=376.80 Aligned_cols=216 Identities=28% Similarity=0.452 Sum_probs=192.2
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCC---cEEEEcCeeCCCCChHHhh
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTM---GSIIIDNVDITKIGLHDLR 1336 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~---G~I~IDGvdI~~i~l~~LR 1336 (1513)
+.|+++|++++|++...++|+|+||+|++||.+||+|++|||||||+++|.|+++|++ |+|.+||.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4699999999997543459999999999999999999999999999999999999998 8999999999888888889
Q ss_pred hceEEEcCCC--ccccCcHhhccCCC---CCCCH----HHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHH
Q 000432 1337 SRLGIIPQDP--TLFDGTVRGNLDPL---VQYSD----KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLF 1407 (1513)
Q Consensus 1337 ~~isiVpQdp--~LF~gTIR~NLdp~---~~~sd----eei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl 1407 (1513)
++++|+||+| .+++.|+++||.+. ...++ +++.++++.+++.++....| .+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 9999999999 46788999999742 12333 34778899999877655444 57999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHh
Q 000432 1408 CLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1408 ~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~ 1485 (1513)
+|||||+.+|++|||||||++||..+...+.+.|++..+ ++|||+++|+++.+..||+|++|++|++++.|+++++.+
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999988753 789999999999998899999999999999999999876
Q ss_pred c
Q 000432 1486 R 1486 (1513)
Q Consensus 1486 ~ 1486 (1513)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 4
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=372.37 Aligned_cols=220 Identities=24% Similarity=0.421 Sum_probs=189.4
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC--C---CCcEEEEcCeeCCC--CChH
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE--P---TMGSIIIDNVDITK--IGLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e--p---~~G~I~IDGvdI~~--i~l~ 1333 (1513)
.|+++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999974 359999999999999999999999999999999999997 3 59999999999864 4556
Q ss_pred HhhhceEEEcCCCccccCcHhhccCCCC----CCCH----HHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHH
Q 000432 1334 DLRSRLGIIPQDPTLFDGTVRGNLDPLV----QYSD----KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405 (1513)
Q Consensus 1334 ~LR~~isiVpQdp~LF~gTIR~NLdp~~----~~sd----eei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQ 1405 (1513)
.+|++++|+||+|.+|.+|+++|+.... ..++ +++.++++..++.+.+.. .....+.+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD-------RLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHH
Confidence 7889999999999999999999996321 1122 345667778887655422 223456789999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1406 rl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
|++||||++++|+||+|||||++||.++...+.+.|++..+++|+|+|+|+++.+.. ||||++|++|++++.|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999988778999999999999876 9999999999999999999988
Q ss_pred hcCCh
Q 000432 1485 EREDS 1489 (1513)
Q Consensus 1485 ~~~~~ 1489 (1513)
+++..
T Consensus 243 ~~~~~ 247 (259)
T PRK14274 243 SNPDD 247 (259)
T ss_pred hCCCC
Confidence 76443
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=383.04 Aligned_cols=227 Identities=26% Similarity=0.374 Sum_probs=191.4
Q ss_pred eEEEEEEEEEEcCC--------CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCh
Q 000432 1261 TISFHNLQIRYAEH--------LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGL 1332 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~--------~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l 1332 (1513)
.|+++|++++|+.. ...+|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 58999999999631 2369999999999999999999999999999999999999999999999999998875
Q ss_pred H---HhhhceEEEcCCCc--ccc-CcHhhccC-C---CCCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCC
Q 000432 1333 H---DLRSRLGIIPQDPT--LFD-GTVRGNLD-P---LVQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGEN 1398 (1513)
Q Consensus 1333 ~---~LR~~isiVpQdp~--LF~-gTIR~NLd-p---~~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~n 1398 (1513)
. .+|+++++|||||. |+. -||.+|+. + ....+ .+++.++++.+++.+ ..++.. ...
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~~----p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDRY----PHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcCC----Ccc
Confidence 4 56889999999994 554 48888874 1 11122 345788899988853 123333 357
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEe
Q 000432 1399 WSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIA 1475 (1513)
Q Consensus 1399 LSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~Iv 1475 (1513)
||||||||++|||||+.+|+|||+||||++||..+.+.|.+.|++..+ ++|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999987643 7899999999999976 9999999999999
Q ss_pred EecChhHHHhcCChHHHH-HHHH
Q 000432 1476 EYDSPTKLLEREDSFFSQ-LIKE 1497 (1513)
Q Consensus 1476 E~Gtp~eLl~~~~~~f~~-l~~~ 1497 (1513)
|.|+++++++++...|.+ |++.
T Consensus 235 e~g~~~~~~~~p~hpyt~~ll~~ 257 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQALLSA 257 (327)
T ss_pred EECCHHHHhcCCCCHHHHHHHHh
Confidence 999999999876554554 4443
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=376.05 Aligned_cols=215 Identities=26% Similarity=0.380 Sum_probs=190.6
Q ss_pred eEEEEEEEEEEcCC-CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhce
Q 000432 1261 TISFHNLQIRYAEH-LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~-~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~i 1339 (1513)
.|+++||+++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743 24599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcCCC--ccccCcHhhccCCC---CCCCHH----HHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHH
Q 000432 1340 GIIPQDP--TLFDGTVRGNLDPL---VQYSDK----QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLG 1410 (1513)
Q Consensus 1340 siVpQdp--~LF~gTIR~NLdp~---~~~sde----ei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LA 1410 (1513)
+|+||+| .+++.|+.+||... ...+++ ++.++++.+++.++..+. ...||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 47788999999642 123333 356788888887654432 357999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhc
Q 000432 1411 RTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1411 RALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
|||+++|+||||||||++||+++.+.+.+.|++..+ ++|+|+|+|+++.+..||+|++|++|++++.|++++++++
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999987753 7899999999999988999999999999999999998875
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=376.67 Aligned_cols=214 Identities=26% Similarity=0.407 Sum_probs=189.7
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.++++||+++|+.+. ++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 3 ~l~~~~l~~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGSK-EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCCC-ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 378999999996433 4999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcCCC--ccccCcHhhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHH
Q 000432 1341 IIPQDP--TLFDGTVRGNLDPLV---QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGR 1411 (1513)
Q Consensus 1341 iVpQdp--~LF~gTIR~NLdp~~---~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LAR 1411 (1513)
++||+| .+|+.|+++|+.... ..+ ++.+.++++.+++.+...+.| ..||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 478899999996321 223 245788889988876654443 479999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHh-hcCEEEEEeCCEEeEecChhHHHhc
Q 000432 1412 TLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVI-DSDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1412 ALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~-~~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
||+.+|++|||||||++||+.+.+.+.+.+++..+ ++|+|+++|+++.+. .||||++|++|++++.|+++++++.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999987653 789999999999996 4999999999999999999999865
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=372.70 Aligned_cols=217 Identities=27% Similarity=0.419 Sum_probs=188.3
Q ss_pred CceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC-------
Q 000432 1259 VGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG------- 1331 (1513)
Q Consensus 1259 ~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~------- 1331 (1513)
.+.|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..+.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 467999999999974 35999999999999999999999999999999999999999999999999986531
Q ss_pred ------hHHhhhceEEEcCCCccccC-cHhhccCCC----CCC----CHHHHHHHHHHcCCcHHHHhhhccccchhccCC
Q 000432 1332 ------LHDLRSRLGIIPQDPTLFDG-TVRGNLDPL----VQY----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENG 1396 (1513)
Q Consensus 1332 ------l~~LR~~isiVpQdp~LF~g-TIR~NLdp~----~~~----sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G 1396 (1513)
...+|++++|+||++.+|.+ |+++|+... ... .++++.++++..++.+... ....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCc
Confidence 35678899999999999975 999999631 111 2345777888888765431 2345
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEE
Q 000432 1397 ENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRI 1474 (1513)
Q Consensus 1397 ~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~I 1474 (1513)
..||||||||++|||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|+|+++.+.+ ||||++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 6799999999999999999999999999999999999999999998764 48999999999999987 999999999999
Q ss_pred eEecChhHHHhcC
Q 000432 1475 AEYDSPTKLLERE 1487 (1513)
Q Consensus 1475 vE~Gtp~eLl~~~ 1487 (1513)
++.|+++++.+.+
T Consensus 231 ~~~~~~~~~~~~~ 243 (257)
T PRK10619 231 EEEGAPEQLFGNP 243 (257)
T ss_pred EEeCCHHHhhhCc
Confidence 9999999988654
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=380.16 Aligned_cols=215 Identities=23% Similarity=0.355 Sum_probs=185.0
Q ss_pred eEEEEEEEEEEcCCC---CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCC--------
Q 000432 1261 TISFHNLQIRYAEHL---PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITK-------- 1329 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~---~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~-------- 1329 (1513)
.|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 389999999997542 259999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CChHHhhhceEEEcCCC--ccccCcHhhccCCCC---CCC----HHHHHHHHHHcCCc-HHHHh
Q 000432 1330 ----------------IGLHDLRSRLGIIPQDP--TLFDGTVRGNLDPLV---QYS----DKQVWEALDKCQLG-DLVRA 1383 (1513)
Q Consensus 1330 ----------------i~l~~LR~~isiVpQdp--~LF~gTIR~NLdp~~---~~s----deei~~aL~~~~l~-~~I~~ 1383 (1513)
.+...+|++++||||+| .+|..|+++||.+.. ..+ ++++.++++.+++. ++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~- 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ- 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-
Confidence 13467899999999987 688899999997431 223 34567788888875 3332
Q ss_pred hhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh
Q 000432 1384 KEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID 1462 (1513)
Q Consensus 1384 lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~ 1462 (1513)
....+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .++|||+|+|+++.+..
T Consensus 161 ----------~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 161 ----------RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred ----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 3345799999999999999999999999999999999999999999998764 47999999999998755
Q ss_pred -cCEEEEEeCCEEeEecChhHHHhc
Q 000432 1463 -SDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1463 -~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
||||++|++|++++.|+++++.++
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998875
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=367.07 Aligned_cols=202 Identities=28% Similarity=0.408 Sum_probs=175.3
Q ss_pred EEEEEEEEEEcCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHH----h
Q 000432 1262 ISFHNLQIRYAEHL--PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHD----L 1335 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~--~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~----L 1335 (1513)
|+++||+++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999997531 35999999999999999999999999999999999999999999999999998877443 4
Q ss_pred hhceEEEcCCCccccC-cHhhccCCC---CCC----CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHH
Q 000432 1336 RSRLGIIPQDPTLFDG-TVRGNLDPL---VQY----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLF 1407 (1513)
Q Consensus 1336 R~~isiVpQdp~LF~g-TIR~NLdp~---~~~----sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl 1407 (1513)
|++++|+||+|.+|.+ |+++|+... ... .++++.++++..++.+...+ ...+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNH-----------YPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhc-----------ChhhcCHHHHHHH
Confidence 6789999999999986 999999642 111 13467778888877655433 2357999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhcCEEEEEeCCEE
Q 000432 1408 CLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVIDSDLVLVLSDGRI 1474 (1513)
Q Consensus 1408 ~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVLd~G~I 1474 (1513)
+|||||+++|+||+|||||++||+++.+.+.+.|++..+ ++|+|+|+|+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998754 7899999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=372.19 Aligned_cols=214 Identities=24% Similarity=0.436 Sum_probs=186.1
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC----------
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG---------- 1331 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~---------- 1331 (1513)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 579999999964 35999999999999999999999999999999999999999999999999997653
Q ss_pred ---hHHhhhceEEEcCCCcccc-CcHhhccCCC----CCC----CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCC
Q 000432 1332 ---LHDLRSRLGIIPQDPTLFD-GTVRGNLDPL----VQY----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENW 1399 (1513)
Q Consensus 1332 ---l~~LR~~isiVpQdp~LF~-gTIR~NLdp~----~~~----sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nL 1399 (1513)
...+|++++++||++.+|. .|+++|+... ... .++++.++++..++.+...+ ....|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADH-----------MPAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhc-----------Chhhc
Confidence 2467889999999999885 7999999641 111 23456778888877655443 33579
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeE
Q 000432 1400 SVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAE 1476 (1513)
Q Consensus 1400 SgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE 1476 (1513)
|||||||++||||++++|++|+|||||++||+.+...+.+.|++..+ ++|+|+|+|+++.+.+ ||++++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988653 7899999999999965 99999999999999
Q ss_pred ecChhHHHhcCC
Q 000432 1477 YDSPTKLLERED 1488 (1513)
Q Consensus 1477 ~Gtp~eLl~~~~ 1488 (1513)
.|+++++.+.+.
T Consensus 228 ~g~~~~~~~~~~ 239 (252)
T TIGR03005 228 QGKPDEIFRQPK 239 (252)
T ss_pred eCCHHHHhcCCC
Confidence 999999987643
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=369.90 Aligned_cols=221 Identities=27% Similarity=0.453 Sum_probs=190.7
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCC--CCh
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP-----TMGSIIIDNVDITK--IGL 1332 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep-----~~G~I~IDGvdI~~--i~l 1332 (1513)
|.|+++||+++|++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++| ++|+|.+||.++.+ .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 57999999999974 3599999999999999999999999999999999999863 69999999999875 456
Q ss_pred HHhhhceEEEcCCCccccCcHhhccCCCC---CC-----CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHH
Q 000432 1333 HDLRSRLGIIPQDPTLFDGTVRGNLDPLV---QY-----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQR 1404 (1513)
Q Consensus 1333 ~~LR~~isiVpQdp~LF~gTIR~NLdp~~---~~-----sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQR 1404 (1513)
..+|++++++||+|.+|..|+++|+.... .. .++++.++++.+++.+.+. ........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 67899999999999999999999996421 11 2345677788887765443 223345678999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHH
Q 000432 1405 QLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKL 1483 (1513)
Q Consensus 1405 Qrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eL 1483 (1513)
||++||||++.+|++|+|||||++||+.+...+.+.|++..+++|+|+++|+++.+.+ ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987668999999999998876 999999999999999999998
Q ss_pred HhcCCh
Q 000432 1484 LEREDS 1489 (1513)
Q Consensus 1484 l~~~~~ 1489 (1513)
..++..
T Consensus 233 ~~~~~~ 238 (250)
T PRK14240 233 FTNPKD 238 (250)
T ss_pred HhCCCC
Confidence 865433
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=389.34 Aligned_cols=220 Identities=25% Similarity=0.420 Sum_probs=194.9
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+++..++|++++
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4899999999964 36999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcc-ccCcHhhccCCCC-----------CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHH
Q 000432 1341 IIPQDPTL-FDGTVRGNLDPLV-----------QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFC 1408 (1513)
Q Consensus 1341 iVpQdp~L-F~gTIR~NLdp~~-----------~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~ 1408 (1513)
+|||++.+ |+.|+++|+.... ..+++.+.++++.+++.++..+ . ..+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-------~----~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-------P----VTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-------C----hhhCCHHHHHHHH
Confidence 99999987 6789999995421 1224568899999999876533 2 3579999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhc
Q 000432 1409 LGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1409 LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
|||||+++|+||+|||||++||+.+...+.+.|++.. +++|+|+++|+++.+.. ||||++|++|++++.|+|++++..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999999875 47899999999999955 999999999999999999999865
Q ss_pred CChHHHHHH
Q 000432 1487 EDSFFSQLI 1495 (1513)
Q Consensus 1487 ~~~~f~~l~ 1495 (1513)
....+++
T Consensus 230 --~~l~~~~ 236 (402)
T PRK09536 230 --DTLRAAF 236 (402)
T ss_pred --HHHHHHh
Confidence 3444444
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=378.82 Aligned_cols=216 Identities=27% Similarity=0.418 Sum_probs=185.7
Q ss_pred eEEEEEEEEEEcCCC---CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCC----CChH
Q 000432 1261 TISFHNLQIRYAEHL---PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITK----IGLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~---~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~----i~l~ 1333 (1513)
.|+++|++++|++.. .++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996432 359999999999999999999999999999999999999999999999999963 4566
Q ss_pred HhhhceEEEcCCC--ccccCcHhhccCCCC---CCCH----HHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHH
Q 000432 1334 DLRSRLGIIPQDP--TLFDGTVRGNLDPLV---QYSD----KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQR 1404 (1513)
Q Consensus 1334 ~LR~~isiVpQdp--~LF~gTIR~NLdp~~---~~sd----eei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQR 1404 (1513)
..|++++||||+| .+|+.|+++|+.+.. ..+. +.+.++++.+++.+.+ .+ ....+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~------~~----~~~~~LSgGq~ 151 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL------LA----RSPFELSGGQM 151 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh------hh----CCcccCCHHHH
Confidence 7889999999998 688899999996321 2233 3456677888875322 12 23457999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChh
Q 000432 1405 QLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPT 1481 (1513)
Q Consensus 1405 Qrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~ 1481 (1513)
||++|||||+.+|+||||||||++||+.+...+.+.|++..+ +.|||+|+|+++.+.. ||||++|++|++++.|+++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999988653 7899999999999865 9999999999999999999
Q ss_pred HHHhc
Q 000432 1482 KLLER 1486 (1513)
Q Consensus 1482 eLl~~ 1486 (1513)
++.++
T Consensus 232 ~~~~~ 236 (290)
T PRK13634 232 EIFAD 236 (290)
T ss_pred HHhcC
Confidence 98765
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=390.15 Aligned_cols=216 Identities=26% Similarity=0.401 Sum_probs=189.0
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence 4899999999964 3599999999999999999999999999999999999999999999999999876653 56899
Q ss_pred EEcCCCccccC-cHhhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHH
Q 000432 1341 IIPQDPTLFDG-TVRGNLDPLV---QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRT 1412 (1513)
Q Consensus 1341 iVpQdp~LF~g-TIR~NLdp~~---~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARA 1412 (1513)
||||++.+|.. |+++|+.+.. ..+ ++++.++++..++.++..+.| .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 9999997421 122 345788889888876554443 4699999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcCCh
Q 000432 1413 LLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDS 1489 (1513)
Q Consensus 1413 LLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~~~ 1489 (1513)
|+++|+||+||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999987643 7899999999998876 999999999999999999999887654
Q ss_pred HH
Q 000432 1490 FF 1491 (1513)
Q Consensus 1490 ~f 1491 (1513)
.|
T Consensus 228 ~~ 229 (369)
T PRK11000 228 RF 229 (369)
T ss_pred HH
Confidence 43
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=370.53 Aligned_cols=222 Identities=25% Similarity=0.423 Sum_probs=193.1
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCC--CChH
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PTMGSIIIDNVDITK--IGLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e-----p~~G~I~IDGvdI~~--i~l~ 1333 (1513)
.++++||+++|++ .++|+|+||+|++||.+||+|++|||||||+++|+|+.+ |++|+|.+||.+++. .+..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 4789999999974 359999999999999999999999999999999999975 389999999999876 3467
Q ss_pred HhhhceEEEcCCCccccCcHhhccCCC-C--CC-C----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHH
Q 000432 1334 DLRSRLGIIPQDPTLFDGTVRGNLDPL-V--QY-S----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405 (1513)
Q Consensus 1334 ~LR~~isiVpQdp~LF~gTIR~NLdp~-~--~~-s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQ 1405 (1513)
.+|++++|+||+|.+|.+|+++|+... . .. + ++++.++++.+++.+++..+ ....+.+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHHH
Confidence 789999999999999999999999632 1 11 2 24567788999987765432 23456789999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1406 rl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
|+|||||++++|+||+|||||++||..+...+.+.|++..+++|+|+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988778999999999999887 8999999999999999999998
Q ss_pred hcCChHH
Q 000432 1485 EREDSFF 1491 (1513)
Q Consensus 1485 ~~~~~~f 1491 (1513)
..+.+.+
T Consensus 234 ~~~~~~~ 240 (250)
T PRK14266 234 INPKDKR 240 (250)
T ss_pred hCCCChH
Confidence 7655544
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=361.67 Aligned_cols=198 Identities=24% Similarity=0.409 Sum_probs=174.7
Q ss_pred EEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEE
Q 000432 1263 SFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGII 1342 (1513)
Q Consensus 1263 ~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiV 1342 (1513)
+++|++++|+.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. ...|++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 468999999652 359999999999999999999999999999999999999999999999999864 4577889999
Q ss_pred cCCC--ccccCcHhhccCCCC---CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCC
Q 000432 1343 PQDP--TLFDGTVRGNLDPLV---QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKS 1417 (1513)
Q Consensus 1343 pQdp--~LF~gTIR~NLdp~~---~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~ 1417 (1513)
||+| .+|+.|+++|+.... ...++++.++++.+++.++..+.| ..||||||||++||||++++|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCC
Confidence 9998 478899999997431 123457889999999987655444 369999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEe
Q 000432 1418 SILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIA 1475 (1513)
Q Consensus 1418 ~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~Iv 1475 (1513)
++|+|||||++||+++.+.+.+.|++.. +++|+|+++|+++.+.. ||+|++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999998763 57899999999999976 9999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=374.23 Aligned_cols=223 Identities=24% Similarity=0.362 Sum_probs=190.7
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChH---Hhhh
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLH---DLRS 1337 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~---~LR~ 1337 (1513)
.|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++..++.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 5999999999964 3599999999999999999999999999999999999999999999999999877653 3578
Q ss_pred ceEEEcCCCccccC-cHhhccCCC----CCCCH----HHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHH
Q 000432 1338 RLGIIPQDPTLFDG-TVRGNLDPL----VQYSD----KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFC 1408 (1513)
Q Consensus 1338 ~isiVpQdp~LF~g-TIR~NLdp~----~~~sd----eei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~ 1408 (1513)
+++|+||++.+|.+ |+++|+... ...+. +++.++++..++.+.... ...+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL-----------MPSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHH
Confidence 89999999999986 999999631 11222 345667777777554322 23579999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHh
Q 000432 1409 LGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1409 LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~ 1485 (1513)
||||++++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999988643 7899999999999877 99999999999999999999987
Q ss_pred cCChHHHHHHH
Q 000432 1486 REDSFFSQLIK 1496 (1513)
Q Consensus 1486 ~~~~~f~~l~~ 1496 (1513)
+++..++.++.
T Consensus 234 ~~~~~~~~~~~ 244 (269)
T PRK11831 234 NPDPRVRQFLD 244 (269)
T ss_pred CCcHHHHHHHH
Confidence 65445555554
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=372.39 Aligned_cols=225 Identities=24% Similarity=0.341 Sum_probs=189.6
Q ss_pred eEEEEEEEEEEcCC-------CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChH
Q 000432 1261 TISFHNLQIRYAEH-------LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~-------~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~ 1333 (1513)
.|+++||+++|++. ...+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++..++.+
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999642 34699999999999999999999999999999999999999999999999999887765
Q ss_pred H---hhhceEEEcCCCc--cc-cCcHhhccCC----CCC----CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCC
Q 000432 1334 D---LRSRLGIIPQDPT--LF-DGTVRGNLDP----LVQ----YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENW 1399 (1513)
Q Consensus 1334 ~---LR~~isiVpQdp~--LF-~gTIR~NLdp----~~~----~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nL 1399 (1513)
+ +|++++++||+|. ++ ..|+++|+.. ... ..++++.++++..++.+.. ....+.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED----------ADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh----------hhCChhhC
Confidence 4 6788999999983 44 4699999842 111 1234677788887774211 12345679
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeE
Q 000432 1400 SVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAE 1476 (1513)
Q Consensus 1400 SgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE 1476 (1513)
|||||||++||||++.+|+||+|||||++||+++...+.+.|++..+ ++|+|+|+|+++.+.. ||+|++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999987653 7899999999999975 99999999999999
Q ss_pred ecChhHHHhcCChHHHHHH
Q 000432 1477 YDSPTKLLEREDSFFSQLI 1495 (1513)
Q Consensus 1477 ~Gtp~eLl~~~~~~f~~l~ 1495 (1513)
.|+++++.+.++.+++++.
T Consensus 232 ~g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 232 ECDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred ECCHHHHcCCCCHHHHHHH
Confidence 9999999876455555554
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=363.38 Aligned_cols=202 Identities=30% Similarity=0.464 Sum_probs=179.0
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++||+++|+.. ++|+|+||++++| ++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+ ..+|+++++
T Consensus 1 i~~~~~~~~~~~~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECCE--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 5799999999643 5999999999999 99999999999999999999999999999999999998877 778999999
Q ss_pred EcCCCccccC-cHhhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1342 IPQDPTLFDG-TVRGNLDPL---VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1342 VpQdp~LF~g-TIR~NLdp~---~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
+||+|.+|.+ |+++|+... ...+ ++++.++++..++.+.. |+.+ .+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-------KKKI----GSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-------hCch----hhCCHHHHHHHHHHHHH
Confidence 9999999986 999998631 1122 34677888888886553 2332 46999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEec
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYD 1478 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~G 1478 (1513)
+++|++|+|||||++||+.+.+.+.+.|++..+++|+|+|+|+++.+.. ||||++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987777999999999999975 9999999999999865
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=369.38 Aligned_cols=222 Identities=24% Similarity=0.453 Sum_probs=191.1
Q ss_pred CceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC--C---CCcEEEEcCeeCCCC--C
Q 000432 1259 VGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE--P---TMGSIIIDNVDITKI--G 1331 (1513)
Q Consensus 1259 ~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e--p---~~G~I~IDGvdI~~i--~ 1331 (1513)
+|.|+++|++++|++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++ | ++|+|.+||.++... .
T Consensus 2 ~~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 2 NNKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred CcEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 467999999999974 359999999999999999999999999999999999986 4 689999999999753 4
Q ss_pred hHHhhhceEEEcCCCcccc-CcHhhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChh
Q 000432 1332 LHDLRSRLGIIPQDPTLFD-GTVRGNLDPL----VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVG 1402 (1513)
Q Consensus 1332 l~~LR~~isiVpQdp~LF~-gTIR~NLdp~----~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgG 1402 (1513)
...+|++++++||++.+|. .|+++|+... +..+ ++++.++++.+++.+.+..+ ....+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR-------LKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH-------hhCCcCcCCHH
Confidence 4578899999999999998 5999999631 1112 24567788888886654322 23356789999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChh
Q 000432 1403 QRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPT 1481 (1513)
Q Consensus 1403 QRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~ 1481 (1513)
||||++||||++++|++|||||||++||..+...+.+.|++..+++|+|+++|+++.+.. ||+|++|++|+|++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988778899999999999865 9999999999999999999
Q ss_pred HHHhcCCh
Q 000432 1482 KLLEREDS 1489 (1513)
Q Consensus 1482 eLl~~~~~ 1489 (1513)
++...+..
T Consensus 233 ~~~~~~~~ 240 (252)
T PRK14256 233 KIFTTPEK 240 (252)
T ss_pred HHHhCCCc
Confidence 99876443
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=372.78 Aligned_cols=220 Identities=26% Similarity=0.413 Sum_probs=192.4
Q ss_pred CceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCC--CC
Q 000432 1259 VGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP-----TMGSIIIDNVDITK--IG 1331 (1513)
Q Consensus 1259 ~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep-----~~G~I~IDGvdI~~--i~ 1331 (1513)
.+.|+++|++++|++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++| ++|+|.+||.|+.. .+
T Consensus 23 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 457999999999964 3599999999999999999999999999999999999984 89999999999975 44
Q ss_pred hHHhhhceEEEcCCCccccCcHhhccCCC---CC-CC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhH
Q 000432 1332 LHDLRSRLGIIPQDPTLFDGTVRGNLDPL---VQ-YS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQ 1403 (1513)
Q Consensus 1332 l~~LR~~isiVpQdp~LF~gTIR~NLdp~---~~-~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQ 1403 (1513)
...+|++++|+||++.+|.+|+++|+... .. .. ++++.++++.+++.+.+.. .....+.+|||||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHHH
Confidence 56789999999999999999999999642 11 11 3457788888888765432 3345567899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhH
Q 000432 1404 RQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTK 1482 (1513)
Q Consensus 1404 RQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~e 1482 (1513)
|||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+++|+++.+.. ||||++|++|++++.|++++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999876 99999999999999999999
Q ss_pred HHhcC
Q 000432 1483 LLERE 1487 (1513)
Q Consensus 1483 Ll~~~ 1487 (1513)
+.+++
T Consensus 254 ~~~~~ 258 (272)
T PRK14236 254 LFTSP 258 (272)
T ss_pred HhcCC
Confidence 98654
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=375.71 Aligned_cols=215 Identities=21% Similarity=0.375 Sum_probs=190.0
Q ss_pred eEEEEEEEEEEcCC----CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC-hHHh
Q 000432 1261 TISFHNLQIRYAEH----LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG-LHDL 1335 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~----~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~-l~~L 1335 (1513)
-|+++|++++|+.. .+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 58999999999743 246999999999999999999999999999999999999999999999999998654 4568
Q ss_pred hhceEEEcCCCc--cccCcHhhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHH
Q 000432 1336 RSRLGIIPQDPT--LFDGTVRGNLDPLV---QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQL 1406 (1513)
Q Consensus 1336 R~~isiVpQdp~--LF~gTIR~NLdp~~---~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQr 1406 (1513)
|++++++||+|. +|..|+++|+.+.. ..+ ++++.++++.+++.++..+.| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 77779999996431 122 456788899999877665544 4799999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHH
Q 000432 1407 FCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1407 l~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
++|||||+++|++|||||||++||+.+...+.+.|++.. .++|||+++|+++.+..||+|++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998764 378999999999999889999999999999999999998
Q ss_pred hc
Q 000432 1485 ER 1486 (1513)
Q Consensus 1485 ~~ 1486 (1513)
++
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 65
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=372.74 Aligned_cols=218 Identities=26% Similarity=0.484 Sum_probs=188.3
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCC--CChH
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PTMGSIIIDNVDITK--IGLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e-----p~~G~I~IDGvdI~~--i~l~ 1333 (1513)
.|+++|++++|++ ..+|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5999999999964 359999999999999999999999999999999999865 789999999999975 3445
Q ss_pred HhhhceEEEcCCCccccCcHhhccCCC----CC----CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHH
Q 000432 1334 DLRSRLGIIPQDPTLFDGTVRGNLDPL----VQ----YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405 (1513)
Q Consensus 1334 ~LR~~isiVpQdp~LF~gTIR~NLdp~----~~----~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQ 1405 (1513)
.+|++++|+||++.+|.+|+++|+... .. ..++.+.++++.+++.+.+. ........+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHHH
Confidence 678899999999999999999999632 11 11345677888887754332 1223456789999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1406 rl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
|++|||||+++|+||+|||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988667899999999998865 9999999999999999999998
Q ss_pred hcC
Q 000432 1485 ERE 1487 (1513)
Q Consensus 1485 ~~~ 1487 (1513)
+++
T Consensus 252 ~~~ 254 (268)
T PRK14248 252 TSP 254 (268)
T ss_pred hCC
Confidence 764
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=374.22 Aligned_cols=213 Identities=26% Similarity=0.425 Sum_probs=186.6
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC-hHHhhhceE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG-LHDLRSRLG 1340 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~-l~~LR~~is 1340 (1513)
|+++|++++|+++ +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999643 35999999999999999999999999999999999999999999999999998775 467889999
Q ss_pred EEcCCCc--cccCcHhhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHH
Q 000432 1341 IIPQDPT--LFDGTVRGNLDPLV---QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGR 1411 (1513)
Q Consensus 1341 iVpQdp~--LF~gTIR~NLdp~~---~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LAR 1411 (1513)
++||+|. ++..|+++||.... ..+ ++++.++++..++.+.... ....||+|||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR-----------SPKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------CcccCCHHHHHHHHHHH
Confidence 9999985 57789999997431 122 3456777888877655433 23579999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhc
Q 000432 1412 TLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1412 ALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
|++++|+||+|||||++||+.+...+.+.|++.. +++|+|+++|+++.+..||+|++|++|++++.|+++++...
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999998764 47999999999999988999999999999999999998764
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=363.70 Aligned_cols=208 Identities=25% Similarity=0.379 Sum_probs=182.1
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 579999999964 3599999999999999999999999999999999999999999999999998763 3577889999
Q ss_pred EcCCCccccC-cHhhccCCC---CCC----CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1342 IPQDPTLFDG-TVRGNLDPL---VQY----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1342 VpQdp~LF~g-TIR~NLdp~---~~~----sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
+||++.+|.+ |+++|+... ... .++++.++++..++.+...+.| .+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-----------KTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999875 999999531 111 2346788889888876544332 46999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHH
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKL 1483 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eL 1483 (1513)
+.+|++|+|||||++||+++.+.+.+.|++..+ ++|+|+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999987653 6899999999999876 999999999999999998774
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=374.51 Aligned_cols=215 Identities=25% Similarity=0.434 Sum_probs=189.2
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++|++++|++..+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 59999999999764445999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEcCCCc--cccCcHhhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHH
Q 000432 1341 IIPQDPT--LFDGTVRGNLDPLV---QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGR 1411 (1513)
Q Consensus 1341 iVpQdp~--LF~gTIR~NLdp~~---~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LAR 1411 (1513)
++||+|. ++..|+++|+.... ... ++++.++++..++.++... ...+||+|||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY-----------EPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHH
Confidence 9999994 44568999985421 112 3456778888887654432 34579999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHHhc
Q 000432 1412 TLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1412 ALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
|++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+++|+++.+..||||++|++|++++.|+++++.++
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999988653 7899999999999988999999999999999999998765
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=371.01 Aligned_cols=221 Identities=25% Similarity=0.437 Sum_probs=189.3
Q ss_pred CceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCC--CC
Q 000432 1259 VGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PTMGSIIIDNVDITK--IG 1331 (1513)
Q Consensus 1259 ~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e-----p~~G~I~IDGvdI~~--i~ 1331 (1513)
.-.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 22 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 22 KVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred ceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 346999999999974 359999999999999999999999999999999999987 699999999999853 45
Q ss_pred hHHhhhceEEEcCCCccccCcHhhccCCC---CCCC-----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhH
Q 000432 1332 LHDLRSRLGIIPQDPTLFDGTVRGNLDPL---VQYS-----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQ 1403 (1513)
Q Consensus 1332 l~~LR~~isiVpQdp~LF~gTIR~NLdp~---~~~s-----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQ 1403 (1513)
...+|++++|+||+|.+|..|+++|+... .+.+ ++.+.++++..++.+.+ +......+.+|||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-------~~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL-------KDRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchH-------HHHHhcCcccCCHHH
Confidence 66789999999999999999999999631 1222 22345566666554322 233345667899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhH
Q 000432 1404 RQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTK 1482 (1513)
Q Consensus 1404 RQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~e 1482 (1513)
|||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+++|+++.+.. ||+|++|++|++++.|++++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 252 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDK 252 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999876 99999999999999999999
Q ss_pred HHhcCC
Q 000432 1483 LLERED 1488 (1513)
Q Consensus 1483 Ll~~~~ 1488 (1513)
+.+++.
T Consensus 253 ~~~~~~ 258 (271)
T PRK14238 253 IFSNPS 258 (271)
T ss_pred HHcCCC
Confidence 987643
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=368.93 Aligned_cols=218 Identities=27% Similarity=0.467 Sum_probs=189.4
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCC-----CcEEEEcCeeCCCC--ChH
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPT-----MGSIIIDNVDITKI--GLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~-----~G~I~IDGvdI~~i--~l~ 1333 (1513)
.|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 6899999999964 35999999999999999999999999999999999999997 69999999998753 456
Q ss_pred HhhhceEEEcCCCccccCcHhhccCCCC---C-CC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHH
Q 000432 1334 DLRSRLGIIPQDPTLFDGTVRGNLDPLV---Q-YS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405 (1513)
Q Consensus 1334 ~LR~~isiVpQdp~LF~gTIR~NLdp~~---~-~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQ 1405 (1513)
.+|++++|+||+|.+|..|+++|+.... . .. ++.+.++++..++.+.+. ......+.+|||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHHH
Confidence 7899999999999999999999996421 1 11 234566677777765443 2345567789999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1406 rl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
|++||||++.+|++|||||||++||..+...+.+.|++..+++|||++||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999887667999999999999987 7999999999999999999987
Q ss_pred hcC
Q 000432 1485 ERE 1487 (1513)
Q Consensus 1485 ~~~ 1487 (1513)
..+
T Consensus 235 ~~~ 237 (251)
T PRK14249 235 SRP 237 (251)
T ss_pred hCC
Confidence 653
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=371.03 Aligned_cols=220 Identities=25% Similarity=0.392 Sum_probs=190.3
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCC--CCh
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP-----TMGSIIIDNVDITK--IGL 1332 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep-----~~G~I~IDGvdI~~--i~l 1332 (1513)
+.|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++| ++|+|.+||.++.. ...
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 46999999999964 3599999999999999999999999999999999999985 48999999999864 455
Q ss_pred HHhhhceEEEcCCCccccCcHhhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHH
Q 000432 1333 HDLRSRLGIIPQDPTLFDGTVRGNLDPL----VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQR 1404 (1513)
Q Consensus 1333 ~~LR~~isiVpQdp~LF~gTIR~NLdp~----~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQR 1404 (1513)
..+|++++++||+|.+|+.|+++|+.+. +... ++.+.++++.+++.+.+... ....+..||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK-------LNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHHH
Confidence 6788999999999999999999999632 1112 23466788888887654322 2345668999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEe-----CCEEeEec
Q 000432 1405 QLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLS-----DGRIAEYD 1478 (1513)
Q Consensus 1405 Qrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd-----~G~IvE~G 1478 (1513)
||+|||||++++|++|+|||||++||+.+...+.+.|++..+++|+|+|||+++.+.+ ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999987777999999999999876 99999998 59999999
Q ss_pred ChhHHHhcCC
Q 000432 1479 SPTKLLERED 1488 (1513)
Q Consensus 1479 tp~eLl~~~~ 1488 (1513)
+++++.+++.
T Consensus 237 ~~~~~~~~~~ 246 (259)
T PRK14260 237 VTTQIFSNPL 246 (259)
T ss_pred CHHHHhcCCC
Confidence 9999986543
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=368.37 Aligned_cols=213 Identities=23% Similarity=0.366 Sum_probs=186.1
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHh-hhce
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL-RSRL 1339 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~L-R~~i 1339 (1513)
-|+++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+..+. |.++
T Consensus 2 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 2 ILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred eEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 3789999999964 359999999999999999999999999999999999999999999999999988876654 5579
Q ss_pred EEEcCCCccccC-cHhhccCCCCC------------C---CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhH
Q 000432 1340 GIIPQDPTLFDG-TVRGNLDPLVQ------------Y---SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQ 1403 (1513)
Q Consensus 1340 siVpQdp~LF~g-TIR~NLdp~~~------------~---sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQ 1403 (1513)
+++||++.+|.+ |+++|++.... . .++++.++++..++.+.. .....+|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA-----------DRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHH
Confidence 999999999987 99999964211 0 234566777777665432 23446799999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhH
Q 000432 1404 RQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTK 1482 (1513)
Q Consensus 1404 RQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~e 1482 (1513)
|||++||||++++|++|+|||||++||+++...+.+.|++..+++|+|+++|+++.+.+ ||+|++|++|++++.|++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999999999999999999999999999999999999987778999999999999976 99999999999999999999
Q ss_pred HHhc
Q 000432 1483 LLER 1486 (1513)
Q Consensus 1483 Ll~~ 1486 (1513)
+..+
T Consensus 229 ~~~~ 232 (242)
T TIGR03411 229 VQAD 232 (242)
T ss_pred HhcC
Confidence 8753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=363.14 Aligned_cols=203 Identities=27% Similarity=0.404 Sum_probs=175.4
Q ss_pred EEEEEEEEEEcCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHh---h
Q 000432 1262 ISFHNLQIRYAEHL--PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL---R 1336 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~--~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~L---R 1336 (1513)
|+++||+++|++.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+++..+. |
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996432 359999999999999999999999999999999999999999999999999988876553 4
Q ss_pred -hceEEEcCCCcccc-CcHhhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHH
Q 000432 1337 -SRLGIIPQDPTLFD-GTVRGNLDPL---VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLF 1407 (1513)
Q Consensus 1337 -~~isiVpQdp~LF~-gTIR~NLdp~---~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl 1407 (1513)
++++|+||+|.+|. .|+++|+... ...+ ++++.++++..++.+...+ ....||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINH-----------RPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHH
Confidence 68999999999995 5999999641 1122 2356677777777554333 2357999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhcCEEEEEeCCEEe
Q 000432 1408 CLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVIDSDLVLVLSDGRIA 1475 (1513)
Q Consensus 1408 ~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVLd~G~Iv 1475 (1513)
+||||++++|+||+|||||++||.++...+.+.|++.. .++|+|+|+|+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998764 378999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=380.35 Aligned_cols=228 Identities=19% Similarity=0.311 Sum_probs=189.3
Q ss_pred eEEEEEEEEEEcCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC----CCCcEEEEcCeeCCCCChHH
Q 000432 1261 TISFHNLQIRYAEHL--PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE----PTMGSIIIDNVDITKIGLHD 1334 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~--~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e----p~~G~I~IDGvdI~~i~l~~ 1334 (1513)
.++++|++++|+... ..+|+||||+|++||.+||||+||||||||+++|.|+++ |++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 489999999997532 359999999999999999999999999999999999998 48999999999999998877
Q ss_pred hhh----ceEEEcCCCc--ccc-CcHhhcc----CCCCCC----CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCC
Q 000432 1335 LRS----RLGIIPQDPT--LFD-GTVRGNL----DPLVQY----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENW 1399 (1513)
Q Consensus 1335 LR~----~isiVpQdp~--LF~-gTIR~NL----dp~~~~----sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nL 1399 (1513)
+|+ ++++|||+|. ++. -|+.+|+ ...... .++++.++|+.+++.+.... ......+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--------l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR--------LDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------HhCCchhC
Confidence 654 6999999995 443 3565544 322111 23567889999998653211 22345679
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHh-hcCEEEEEeCCEEeE
Q 000432 1400 SVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVI-DSDLVLVLSDGRIAE 1476 (1513)
Q Consensus 1400 SgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~-~~DrIlVLd~G~IvE 1476 (1513)
|||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+. .||||+||++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988653 789999999999985 499999999999999
Q ss_pred ecChhHHHhcCChHHHH-HHH
Q 000432 1477 YDSPTKLLEREDSFFSQ-LIK 1496 (1513)
Q Consensus 1477 ~Gtp~eLl~~~~~~f~~-l~~ 1496 (1513)
.|+++++.+++...|.+ +++
T Consensus 235 ~g~~~~~~~~p~hpyt~~ll~ 255 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQALLR 255 (326)
T ss_pred ECCHHHHhhCCCChHHHHHHH
Confidence 99999999876555554 443
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=373.68 Aligned_cols=213 Identities=26% Similarity=0.392 Sum_probs=188.7
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++||+++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+..++|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999964 35999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEcCCCccccC-cHhhccCCCC-----------CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHH
Q 000432 1341 IIPQDPTLFDG-TVRGNLDPLV-----------QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFC 1408 (1513)
Q Consensus 1341 iVpQdp~LF~g-TIR~NLdp~~-----------~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~ 1408 (1513)
++||++.++.+ |+++|+.... ...++++.++++.+++.+.....| .+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHHH
Confidence 99999877665 9999996321 112456888999998866544333 369999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHh
Q 000432 1409 LGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1409 LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~ 1485 (1513)
||||++.+|+||||||||++||.++.+.+.+.|++.. .++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 9999999999999999999999999999999998764 27999999999999965 99999999999999999999875
Q ss_pred c
Q 000432 1486 R 1486 (1513)
Q Consensus 1486 ~ 1486 (1513)
.
T Consensus 238 ~ 238 (265)
T PRK10575 238 G 238 (265)
T ss_pred H
Confidence 3
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=367.60 Aligned_cols=214 Identities=22% Similarity=0.349 Sum_probs=183.3
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCC------CCChHH
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDIT------KIGLHD 1334 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~------~i~l~~ 1334 (1513)
.|+++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++. ......
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 3789999999964 35999999999999999999999999999999999999999999999999874 123456
Q ss_pred hhhceEEEcCCCccccC-cHhhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHH
Q 000432 1335 LRSRLGIIPQDPTLFDG-TVRGNLDPL----VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405 (1513)
Q Consensus 1335 LR~~isiVpQdp~LF~g-TIR~NLdp~----~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQ 1405 (1513)
+|++++|+||+|.+|.+ |+++|+... ...+ .+++.++++..++.++..+. ..+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRF-----------PLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHH
Confidence 78999999999999975 999999521 1122 23456667777765544433 3579999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHH
Q 000432 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKL 1483 (1513)
Q Consensus 1406 rl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eL 1483 (1513)
|++||||++++|+||||||||++||+++...+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999998765 47999999999999976 999999999999999999987
Q ss_pred HhcC
Q 000432 1484 LERE 1487 (1513)
Q Consensus 1484 l~~~ 1487 (1513)
.+.+
T Consensus 229 ~~~~ 232 (242)
T PRK11124 229 TQPQ 232 (242)
T ss_pred cCcc
Confidence 6543
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=330.23 Aligned_cols=210 Identities=28% Similarity=0.431 Sum_probs=186.5
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|.+++|.|+|.. .| =.++++|++||+|||+|+||||||||++++.||..|.+|+|.|+|+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~~-~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGH-LP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCc-ce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 567899999964 34 257899999999999999999999999999999999999999999999887765 467999
Q ss_pred EcCCCccccC-cHhhccCCC----C---CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1342 IPQDPTLFDG-TVRGNLDPL----V---QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1342 VpQdp~LF~g-TIR~NLdp~----~---~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
++||.-||.- ||++|+..+ - ....+.+..|+.++|+.++.+++|+ .||||||||++|||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHH
Confidence 9999999965 999999643 1 2345678999999999999999985 5799999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcCC
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERED 1488 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~~ 1488 (1513)
+|+.+||+||||.|+||+.-.+.+...+.+.. ++.|+++|||.++.+.. +||++++|+|||++.|+-++++..++
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999999999999999988888776654 57799999999999876 99999999999999999999998754
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=366.61 Aligned_cols=213 Identities=28% Similarity=0.387 Sum_probs=183.8
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCC--ChHHhhhce
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKI--GLHDLRSRL 1339 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i--~l~~LR~~i 1339 (1513)
|+++|++++|++ +++|+|+||++++||++||+|++|||||||+++|.|+++|++|+|.+||.++... +...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 689999999964 3599999999999999999999999999999999999999999999999999864 345678899
Q ss_pred EEEcCCCcccc-CcHhhccCCCC----CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHH
Q 000432 1340 GIIPQDPTLFD-GTVRGNLDPLV----QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLG 1410 (1513)
Q Consensus 1340 siVpQdp~LF~-gTIR~NLdp~~----~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LA 1410 (1513)
+++||++.+|. .|+++|+.... ..+ ++++.++++..++.+... .....||+|||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH-----------HYPSELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHh-----------cChhhcCHHHHHHHHHH
Confidence 99999999886 59999996421 112 234556677666654433 23467999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcC
Q 000432 1411 RTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE 1487 (1513)
Q Consensus 1411 RALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~ 1487 (1513)
||++++|+||+|||||++||.++...+.+.|++.. +++|+|+|+|+++.+.. ||+|++|++|++++.|+++++++++
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 99999999999999999999999999999998764 47899999999999865 9999999999999999999987653
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=363.04 Aligned_cols=205 Identities=25% Similarity=0.416 Sum_probs=178.7
Q ss_pred EEEEEEEEEEcCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhce
Q 000432 1262 ISFHNLQIRYAEHL--PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~--~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~i 1339 (1513)
|+++||+++|+... +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 78999999997532 269999999999999999999999999999999999999999999999999976 456788999
Q ss_pred EEEcCCCccccC-cHhhccCCC---CCC----CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHH
Q 000432 1340 GIIPQDPTLFDG-TVRGNLDPL---VQY----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGR 1411 (1513)
Q Consensus 1340 siVpQdp~LF~g-TIR~NLdp~---~~~----sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LAR 1411 (1513)
+++||+|.+|.+ |+++|+... ... .++++.++++..++.+...+ ...+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-----------RVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhh-----------hhhhcCHHHHHHHHHHH
Confidence 999999999985 999999531 112 23466778888887655433 34579999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEec
Q 000432 1412 TLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYD 1478 (1513)
Q Consensus 1412 ALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~G 1478 (1513)
|++++|+||+|||||++||+.+.+.+.+.|++.. +++|+|+|+|+++.+.+ ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998764 47899999999999876 9999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=361.06 Aligned_cols=206 Identities=27% Similarity=0.411 Sum_probs=175.0
Q ss_pred EEEEeEEEEeCCC--CCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------
Q 000432 632 VEVVNGKFSWNPE--SSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------- 696 (1513)
Q Consensus 632 I~~~~~sf~~~~~--~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------------- 696 (1513)
|+++++++.|... ...++|+|+||+|++|++.+|+|.||+|||||+++|.|+-.|++|+|.++|.
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999752 1346899999999999999999999999999999999999999999999993
Q ss_pred ---EEEEcCCCcccC-ccHHHHHccCCCC----CchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHH
Q 000432 697 ---KAYVPQSPWILT-GNIRENILFGNQY----DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIA 768 (1513)
Q Consensus 697 ---~ayv~Q~~~l~~-~ti~eNI~fg~~~----~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lA 768 (1513)
+|+++|++-|++ .||.|||.|..+. .++..++|.+.+.+.. |++ .-+....+|||||||||+||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVg----L~d----k~~~yP~qLSGGQKQRVaIA 153 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVG----LSD----KADRYPAQLSGGQKQRVAIA 153 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcC----Chh----hhccCchhcCcchhhHHHHH
Confidence 599999999997 6999999997543 2344556666554431 221 12345679999999999999
Q ss_pred HHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhh--cCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000432 769 RAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI--LKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 769 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~--~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
|||..+|+|||.|||||||||+|.+.|.+ +++.. .-|-|+++|||.++.++. ||++.||++|+++|+|+..|+..+
T Consensus 154 RALa~~P~iLL~DEaTSALDP~TT~sIL~-LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~ 232 (339)
T COG1135 154 RALANNPKILLCDEATSALDPETTQSILE-LLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFAN 232 (339)
T ss_pred HHHhcCCCEEEecCccccCChHHHHHHHH-HHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcC
Confidence 99999999999999999999999999985 45443 248899999999999987 999999999999999999998765
Q ss_pred C
Q 000432 846 N 846 (1513)
Q Consensus 846 ~ 846 (1513)
.
T Consensus 233 P 233 (339)
T COG1135 233 P 233 (339)
T ss_pred c
Confidence 4
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=371.97 Aligned_cols=219 Identities=25% Similarity=0.457 Sum_probs=190.1
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCC--CCh
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PTMGSIIIDNVDITK--IGL 1332 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e-----p~~G~I~IDGvdI~~--i~l 1332 (1513)
..|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 46999999999964 359999999999999999999999999999999999997 689999999999865 345
Q ss_pred HHhhhceEEEcCCCccccCcHhhccCCC------CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHH
Q 000432 1333 HDLRSRLGIIPQDPTLFDGTVRGNLDPL------VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQL 1406 (1513)
Q Consensus 1333 ~~LR~~isiVpQdp~LF~gTIR~NLdp~------~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQr 1406 (1513)
..+|++++|+||++.+|.+|+++|+... ....+++++++++..++.+.+.. .......+||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHHH
Confidence 6788999999999999999999999632 11124568888988888654432 2234567899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEE-EEeCCEEeEecChhHHH
Q 000432 1407 FCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVL-VLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1407 l~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIl-VLd~G~IvE~Gtp~eLl 1484 (1513)
++|||||+++|+||||||||++||.++.+.+.+.|++..+++|+|+++|+++.+.. |||++ +|++|+|++.|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999988777899999999999876 99975 57999999999999987
Q ss_pred hcC
Q 000432 1485 ERE 1487 (1513)
Q Consensus 1485 ~~~ 1487 (1513)
+++
T Consensus 269 ~~~ 271 (285)
T PRK14254 269 ENP 271 (285)
T ss_pred hCc
Confidence 654
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=361.46 Aligned_cols=211 Identities=23% Similarity=0.366 Sum_probs=188.4
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCh----HHhhh
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGL----HDLRS 1337 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l----~~LR~ 1337 (1513)
+.+.|+.|+|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ...|+
T Consensus 1 ~~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 1 VQVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred CeeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 3578999999866 459999999999999999999999999999999999999999999999999876543 34577
Q ss_pred ceEEEcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCC
Q 000432 1338 RLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKS 1417 (1513)
Q Consensus 1338 ~isiVpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~ 1417 (1513)
.++|+||+|.+|+.|+++|+.....+++++..++++.+++.+.+..+|.|+++.+.....+||||||||++||||++++|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 89999999999999999999865445677788999999999999999999999999899999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHH--HHHHhc-CCcEEEEeccChhhHhhcCEEEEEeCCE
Q 000432 1418 SILVLDEATASVDSATDGVIQK--IISQEF-KDRTVVTIAHRIHTVIDSDLVLVLSDGR 1473 (1513)
Q Consensus 1418 ~ILiLDEaTSslD~~Te~~Iq~--~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVLd~G~ 1473 (1513)
+||||||||++||..+...+.+ .++... .+.|+|+++|+.+.+..||+|++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999999887776 444332 3689999999999999999999999984
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=354.91 Aligned_cols=189 Identities=34% Similarity=0.456 Sum_probs=158.8
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe--------EEEEcC
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT--------KAYVPQ 702 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~--------~ayv~Q 702 (1513)
.+++++++.+|+. ..+|+|+||+|++||+++|+|||||||||||++|.|+.+|++|+|.++|. ++||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 4789999999974 57999999999999999999999999999999999999999999999884 599999
Q ss_pred CCcccC-ccHHHHHccCCCCC-------chHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcC
Q 000432 703 SPWILT-GNIRENILFGNQYD-------SCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQD 774 (1513)
Q Consensus 703 ~~~l~~-~ti~eNI~fg~~~~-------~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~ 774 (1513)
++-|+. -||+|||.||.+.. +++.++.++..+|...-+..| ..||||||||||||||+..+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHHHhcC
Confidence 988875 59999999997642 123445555555554444444 58999999999999999999
Q ss_pred CCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCc-cccCCEEEEEeC--CeE
Q 000432 775 ADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEF-LPAADIILVMEN--GRI 833 (1513)
Q Consensus 775 ~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~-l~~~d~i~vl~~--G~i 833 (1513)
|+|+||||||+|||+.|..++-+.+.+-+. .++|+++|||+++. +--+|+|++|.+ |+|
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 999999999999999998777554443332 37999999999987 456999999998 444
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=370.17 Aligned_cols=222 Identities=23% Similarity=0.400 Sum_probs=193.5
Q ss_pred CCCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCC---
Q 000432 1257 PDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP-----TMGSIIIDNVDIT--- 1328 (1513)
Q Consensus 1257 p~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep-----~~G~I~IDGvdI~--- 1328 (1513)
|..+.|+++|++++|+.. ++|+|+||+|++||++||+|++|||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 12 ~~~~~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred CCCceEEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 567889999999999743 599999999999999999999999999999999999975 7999999998874
Q ss_pred -CCChHHhhhceEEEcCCCccccCcHhhccCCCC--------CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCC
Q 000432 1329 -KIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLV--------QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENW 1399 (1513)
Q Consensus 1329 -~i~l~~LR~~isiVpQdp~LF~gTIR~NLdp~~--------~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nL 1399 (1513)
....+.+|++++|+||+|.+|.+|+++|+.... +..++++.++++.+++.+.+. ........+|
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~L 162 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNL 162 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccC
Confidence 334567899999999999999999999996421 122467788888888765332 2344556789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEec
Q 000432 1400 SVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYD 1478 (1513)
Q Consensus 1400 SgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~G 1478 (1513)
|+|||||++||||++++|+||+|||||++||.++.+.+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987777899999999999975 9999999999999999
Q ss_pred ChhHHHhcC
Q 000432 1479 SPTKLLERE 1487 (1513)
Q Consensus 1479 tp~eLl~~~ 1487 (1513)
+++++..++
T Consensus 243 ~~~~~~~~~ 251 (265)
T PRK14252 243 ATDTIFIKP 251 (265)
T ss_pred CHHHHHhCC
Confidence 999997654
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=366.77 Aligned_cols=218 Identities=26% Similarity=0.418 Sum_probs=189.7
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCCC--ChH
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP-----TMGSIIIDNVDITKI--GLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep-----~~G~I~IDGvdI~~i--~l~ 1333 (1513)
.|+++|++++|+. .++|+|+||+|++||.+||+|++|||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 6899999999964 3599999999999999999999999999999999999985 799999999999753 345
Q ss_pred HhhhceEEEcCCCccccCcHhhccCCCC---CC-C----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHH
Q 000432 1334 DLRSRLGIIPQDPTLFDGTVRGNLDPLV---QY-S----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405 (1513)
Q Consensus 1334 ~LR~~isiVpQdp~LF~gTIR~NLdp~~---~~-s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQ 1405 (1513)
.+|++++|+||++.+|..|+++|+.... .. + ++++.++++.+++.+.+.. ........||+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHHH
Confidence 6789999999999999999999997421 11 1 2456778888888654432 223456789999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1406 rl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
|++||||++++|+||+|||||++||+.+...+.+.|++..++.|+|+|+|+++.+.. ||||++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987777999999999999876 9999999999999999999997
Q ss_pred hcC
Q 000432 1485 ERE 1487 (1513)
Q Consensus 1485 ~~~ 1487 (1513)
..+
T Consensus 235 ~~~ 237 (251)
T PRK14270 235 LEP 237 (251)
T ss_pred cCC
Confidence 653
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=366.13 Aligned_cols=212 Identities=27% Similarity=0.451 Sum_probs=181.8
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHh-hhceE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL-RSRLG 1340 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~L-R~~is 1340 (1513)
|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 578999999964 359999999999999999999999999999999999999999999999999988876664 57899
Q ss_pred EEcCCCccccC-cHhhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHH
Q 000432 1341 IIPQDPTLFDG-TVRGNLDPL---VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRT 1412 (1513)
Q Consensus 1341 iVpQdp~LF~g-TIR~NLdp~---~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARA 1412 (1513)
++||++.+|.+ |+++|+... .... ++++.++++..++.+ .......+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~a 147 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH-----------LRKSKASSLSGGERRRVEIARA 147 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHHHHHH
Confidence 99999999987 999999632 1122 223445566655543 2334456899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhc
Q 000432 1413 LLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1413 LLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
++++|++|+|||||++||.++.+.+.+.|++.. +++|+|+++|+++.+.. ||+|++|++|++++.|+++++...
T Consensus 148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 223 (232)
T cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223 (232)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhcC
Confidence 999999999999999999999999999998764 47899999999987766 999999999999999999998653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=375.73 Aligned_cols=217 Identities=27% Similarity=0.408 Sum_probs=195.2
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhce
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~i 1339 (1513)
..|+++||+.+|+ ...+++|+|++|++||.+.++|||||||||++++|.||..|++|+|.+||.||..++++ ++.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 4699999999998 34699999999999999999999999999999999999999999999999999998887 4789
Q ss_pred EEEcCCCcccc-CcHhhccCCCCC----CCH----HHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHH
Q 000432 1340 GIIPQDPTLFD-GTVRGNLDPLVQ----YSD----KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLG 1410 (1513)
Q Consensus 1340 siVpQdp~LF~-gTIR~NLdp~~~----~sd----eei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LA 1410 (1513)
++|+|+..||. -||++|+.+.-. ..+ +.+.++|+.+++.++-.+.|. .|||||+||++||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~-----------qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH-----------QLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh-----------hhChHHHHHHHHH
Confidence 99999999995 599999975421 232 368899999999998887774 5799999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcC
Q 000432 1411 RTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE 1487 (1513)
Q Consensus 1411 RALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~ 1487 (1513)
|||..+|++|+||||-|+||.+-...+|.-+++.. .+.|.|.|||+-+.... +|||.||++|+|...|+|+|+..++
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999998887654 38899999999887554 9999999999999999999999998
Q ss_pred ChHH
Q 000432 1488 DSFF 1491 (1513)
Q Consensus 1488 ~~~f 1491 (1513)
...|
T Consensus 229 ~~~f 232 (352)
T COG3842 229 ATRF 232 (352)
T ss_pred chHH
Confidence 7665
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=367.93 Aligned_cols=224 Identities=25% Similarity=0.428 Sum_probs=192.1
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCCC--ChH
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP-----TMGSIIIDNVDITKI--GLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep-----~~G~I~IDGvdI~~i--~l~ 1333 (1513)
.|+++|++++|++ ..+|+|+||+|++||.+||+|++|||||||+++|.|+.+| ++|+|.+||.++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 5899999999964 3599999999999999999999999999999999999763 489999999999876 456
Q ss_pred HhhhceEEEcCCCccccCcHhhccCCCC---C-C----CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHH
Q 000432 1334 DLRSRLGIIPQDPTLFDGTVRGNLDPLV---Q-Y----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405 (1513)
Q Consensus 1334 ~LR~~isiVpQdp~LF~gTIR~NLdp~~---~-~----sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQ 1405 (1513)
..|++++|+||+|.+|++|+++|+.... . . .++++.++++.+++.+.+. +.....+.+||+||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHHH
Confidence 7889999999999999999999997421 1 1 1335667777777754432 2345566789999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1406 rl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
|++||||++.+|++++|||||++||.++.+.+.+.|++..+++|+|+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999988777999999999999975 9999999999999999999998
Q ss_pred hcCChHHHH
Q 000432 1485 EREDSFFSQ 1493 (1513)
Q Consensus 1485 ~~~~~~f~~ 1493 (1513)
+++...+.+
T Consensus 237 ~~~~~~~~~ 245 (253)
T PRK14261 237 ENPHEELTE 245 (253)
T ss_pred hCCCcHHHH
Confidence 764433333
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=369.12 Aligned_cols=219 Identities=21% Similarity=0.429 Sum_probs=190.0
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCC--CChH
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PTMGSIIIDNVDITK--IGLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e-----p~~G~I~IDGvdI~~--i~l~ 1333 (1513)
.|+++||+++|++. ++|+|+||+|++||++||+|++|||||||+++|.|++. |++|+|.+||.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECCE--EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 59999999999643 59999999999999999999999999999999999986 479999999999853 4566
Q ss_pred HhhhceEEEcCCCccccCcHhhccCCCC---CC---CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHH
Q 000432 1334 DLRSRLGIIPQDPTLFDGTVRGNLDPLV---QY---SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLF 1407 (1513)
Q Consensus 1334 ~LR~~isiVpQdp~LF~gTIR~NLdp~~---~~---sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl 1407 (1513)
.+|++++++||++.+|+.|+++|+.... .. .++++.++++.+++.+.+.. .....+.+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHHH
Confidence 7899999999999999899999996421 11 23456677888888665532 23445678999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEe---------CCEEeEe
Q 000432 1408 CLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLS---------DGRIAEY 1477 (1513)
Q Consensus 1408 ~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd---------~G~IvE~ 1477 (1513)
+||||++++|+||||||||++||+++...+.+.|++..+++|||+++|+++.+.. ||||++|+ +|+|++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999988777899999999999866 89999998 8999999
Q ss_pred cChhHHHhcCC
Q 000432 1478 DSPTKLLERED 1488 (1513)
Q Consensus 1478 Gtp~eLl~~~~ 1488 (1513)
|+++++.+++.
T Consensus 241 ~~~~~~~~~~~ 251 (264)
T PRK14243 241 DRTEKIFNSPQ 251 (264)
T ss_pred CCHHHHHhCCC
Confidence 99999987643
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=362.16 Aligned_cols=200 Identities=31% Similarity=0.497 Sum_probs=174.1
Q ss_pred EEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEE
Q 000432 1263 SFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGII 1342 (1513)
Q Consensus 1263 ~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiV 1342 (1513)
+++|++++|+.+..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 47899999975324599999999999999999999999999999999999999999999999999988888899999999
Q ss_pred cCCC--ccccCcHhhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1343 PQDP--TLFDGTVRGNLDPL---VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1343 pQdp--~LF~gTIR~NLdp~---~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
||+| .+++.|+++|+... ...+ ++++.++++..++.+...+ ...+||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDR-----------SPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 9998 36788999999642 1122 2356667777777654432 3367999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCE
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGR 1473 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~ 1473 (1513)
+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|+|+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999998765 37899999999999988 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=362.00 Aligned_cols=201 Identities=28% Similarity=0.389 Sum_probs=175.2
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCh---HHhhhc
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGL---HDLRSR 1338 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l---~~LR~~ 1338 (1513)
|+++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 5789999999644 359999999999999999999999999999999999999999999999999987764 347889
Q ss_pred eEEEcCCCccccC-cHhhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHH
Q 000432 1339 LGIIPQDPTLFDG-TVRGNLDPL---VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLG 1410 (1513)
Q Consensus 1339 isiVpQdp~LF~g-TIR~NLdp~---~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LA 1410 (1513)
++++||+|.+|.+ |+++|+... ...+ ++++.++++.+++.+...+.| .+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHHH
Confidence 9999999999985 999999642 1122 345778888888866544332 47999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEE
Q 000432 1411 RTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRI 1474 (1513)
Q Consensus 1411 RALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~I 1474 (1513)
||++++|+|++|||||++||+++.+.+.+.|++.. +++|+|+|+|+++.+.+ ||+|++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998863 57999999999999986 899999999975
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=364.21 Aligned_cols=220 Identities=30% Similarity=0.463 Sum_probs=192.4
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------EE
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------KA 698 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------~a 698 (1513)
|+++|+++.|+.. .+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4689999999642 357999999999999999999999999999999999999999999999883 69
Q ss_pred EEcCCCcccCccHHHHHccCCC-CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000432 699 YVPQSPWILTGNIRENILFGNQ-YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADI 777 (1513)
Q Consensus 699 yv~Q~~~l~~~ti~eNI~fg~~-~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~i 777 (1513)
|++|++++++.|++||+.++.+ ...++..+.++...+.+.++.+|.|.++..+.++.+|||||||||+||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999999999999998654 233334445555666777788899999989999999999999999999999999999
Q ss_pred EEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhcCccHHHHH
Q 000432 778 YLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLV 853 (1513)
Q Consensus 778 llLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~l~ 853 (1513)
+||||||++||+++.+.+.+ .+..+.+++|+|++||+++.+..||+|++|++|++++.|+.+++.+..+.|..++
T Consensus 160 lllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMR-NMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence 99999999999999877764 5666656899999999999988899999999999999999999988777666554
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=363.57 Aligned_cols=203 Identities=28% Similarity=0.359 Sum_probs=176.7
Q ss_pred EEEEEEEEEEcCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhce
Q 000432 1262 ISFHNLQIRYAEHL--PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~--~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~i 1339 (1513)
|+++|++++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999997521 369999999999999999999999999999999999999999999999999863 47889
Q ss_pred EEEcCCCcccc-CcHhhccCCCC---CC----CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHH
Q 000432 1340 GIIPQDPTLFD-GTVRGNLDPLV---QY----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGR 1411 (1513)
Q Consensus 1340 siVpQdp~LF~-gTIR~NLdp~~---~~----sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LAR 1411 (1513)
+++||+|.+|. .|+++|+.... .. .++++.++++..++.+...+.| .+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999987 69999996321 11 2356788888888876554433 479999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEe--CCEEeEecCh
Q 000432 1412 TLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLS--DGRIAEYDSP 1480 (1513)
Q Consensus 1412 ALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd--~G~IvE~Gtp 1480 (1513)
||+++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|+|+++.+.+ ||+|++|+ +|+++|.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999998764 37899999999998865 99999999 7999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=361.66 Aligned_cols=202 Identities=23% Similarity=0.384 Sum_probs=175.8
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++|++++|+.. ++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+.. |+++++
T Consensus 1 i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECCe--eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 5789999999653 599999999999999999999999999999999999999999999999999876543 578999
Q ss_pred EcCCCcccc-CcHhhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1342 IPQDPTLFD-GTVRGNLDPL---VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1342 VpQdp~LF~-gTIR~NLdp~---~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
+||++.+|. .|+++|+... ...+ ++++.++++..++.+..... ..+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRK-----------PKQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 999999985 5999999642 1122 23566778888876654433 357999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEec
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYD 1478 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~G 1478 (1513)
+++|+||+|||||++||+++.+.+.+.|++.. .++|+|+|+|+++.+.+ ||+|++|++|+++++|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999998864 37899999999999877 9999999999999986
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=357.39 Aligned_cols=201 Identities=57% Similarity=1.022 Sum_probs=183.2
Q ss_pred EEEEeEEEEeCCCCC--CCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCeEEEEcCCCcccCc
Q 000432 632 VEVVNGKFSWNPESS--SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~--~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~~ayv~Q~~~l~~~ 709 (1513)
++++|++++|++... +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++|++|+|++++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 468999999964311 379999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHccCCCCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEeeCcCCCCCH
Q 000432 710 NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDA 789 (1513)
Q Consensus 710 ti~eNI~fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~illLDep~salD~ 789 (1513)
|++||+.++..+++++..++.+.+++.+.++.+|.|++|.+++++.+||||||||++||||++++|+++||||||++||+
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 99999999877666667778888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc-CCcEEEEEccCCCccccCCEEEEEeCCe
Q 000432 790 HTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPAADIILVMENGR 832 (1513)
Q Consensus 790 ~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~~~d~i~vl~~G~ 832 (1513)
+..+.+++.++.... +++|+|++||+++.+..||++++|++|+
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 998888776665443 4789999999999988899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=358.42 Aligned_cols=202 Identities=25% Similarity=0.409 Sum_probs=179.4
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++|++++|+. .++|+|+||++++||.++|+|++|||||||+++|.|+.+|++|+|.+||.++.+. .++|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 578999999954 3699999999999999999999999999999999999999999999999998765 567889999
Q ss_pred EcCCCccc-cCcHhhccCCC---CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCC
Q 000432 1342 IPQDPTLF-DGTVRGNLDPL---VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKS 1417 (1513)
Q Consensus 1342 VpQdp~LF-~gTIR~NLdp~---~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~ 1417 (1513)
+||++.+| +.|+++|+... ...+++++.++++..++.+...+. ...||||||||++||||++++|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 99999888 57999999642 123567888999999987665432 3469999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEec
Q 000432 1418 SILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYD 1478 (1513)
Q Consensus 1418 ~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~G 1478 (1513)
++|+|||||++||+++.+.+.+.|++.. .++|+|+++|+++.+.. ||+|++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998764 47899999999999876 9999999999999865
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=386.51 Aligned_cols=209 Identities=26% Similarity=0.418 Sum_probs=181.9
Q ss_pred cceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHh----hhceEEEcCCCcccc-C
Q 000432 1277 SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL----RSRLGIIPQDPTLFD-G 1351 (1513)
Q Consensus 1277 ~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~L----R~~isiVpQdp~LF~-g 1351 (1513)
.+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.|+.+.+..++ |++++||||++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998887654 358999999999996 4
Q ss_pred cHhhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000432 1352 TVRGNLDPL---VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDE 1424 (1513)
Q Consensus 1352 TIR~NLdp~---~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDE 1424 (1513)
|+++|+... ...+ ++++.++++.+++.++..+.| .+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 999999642 1122 356778899999987665554 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcCCh-HHHHHHH
Q 000432 1425 ATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDS-FFSQLIK 1496 (1513)
Q Consensus 1425 aTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~~~-~f~~l~~ 1496 (1513)
||++||+.+.+.+++.|++.. .++|+|+|+|+++.+.. ||+|++|++|++++.|+|+++++++.. +.+.++.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v~~~~~ 266 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFR 266 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHHHHHHh
Confidence 999999999999999998764 47899999999999865 999999999999999999999886543 3344443
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=369.89 Aligned_cols=212 Identities=25% Similarity=0.437 Sum_probs=187.9
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++..++..++|+.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999964 359999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EcCCCccccC-cHhhccCCCC--------C---CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHH
Q 000432 1342 IPQDPTLFDG-TVRGNLDPLV--------Q---YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCL 1409 (1513)
Q Consensus 1342 VpQdp~LF~g-TIR~NLdp~~--------~---~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~L 1409 (1513)
+||++.+|.+ |+++|+++.. . ..++++.++++.+++.+...+ ....||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----------RLTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----------CcccCCHHHHHHHHH
Confidence 9999999877 9999997421 1 123457778888887654332 345799999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhc
Q 000432 1410 GRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1410 ARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
|||++++|++|||||||++||+++.+.+.+.|++.. +++|+|+++|+++.+.. ||+|++|++|++++.|+++++...
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 228 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH
Confidence 999999999999999999999999999999998764 47899999999999875 999999999999999999998753
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=349.79 Aligned_cols=221 Identities=26% Similarity=0.390 Sum_probs=184.6
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.+++++|+.+|.. ..||+||||+|++||.|+||||||||||||++++.|+..|++|+|.+||.++... ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 5899999999986 4699999999999999999999999999999999999999999999999988443 45799
Q ss_pred EEcCCCcccc-CcHhhccCCCCCC-------CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHH
Q 000432 1341 IIPQDPTLFD-GTVRGNLDPLVQY-------SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRT 1412 (1513)
Q Consensus 1341 iVpQdp~LF~-gTIR~NLdp~~~~-------sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARA 1412 (1513)
||+|++.||. -||++|+...-+. ..+.+.++|+.+||.+|-.+.|. .||||||||++||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHH
Confidence 9999999998 5999999643111 24568899999999999888774 579999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeC--CEEe---EecChhHHH
Q 000432 1413 LLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSD--GRIA---EYDSPTKLL 1484 (1513)
Q Consensus 1413 LLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~--G~Iv---E~Gtp~eLl 1484 (1513)
|+.+|+||+||||.+|||+.|...+|+-+.+.. .++||++|||+++.... +|||+||.+ |+|. +.+=|..-
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i~l~rpR- 223 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPR- 223 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEecCCCCCc-
Confidence 999999999999999999999999999887765 35899999999998655 999999999 5553 33322111
Q ss_pred hcCChHHHHHHHHHhh
Q 000432 1485 EREDSFFSQLIKEYSM 1500 (1513)
Q Consensus 1485 ~~~~~~f~~l~~~~~~ 1500 (1513)
...+..|.++.++-+.
T Consensus 224 ~~~~~~f~~l~~~i~~ 239 (248)
T COG1116 224 IRGDPEFLELREELLE 239 (248)
T ss_pred cccChHHHHHHHHHHH
Confidence 2234566666655443
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=377.31 Aligned_cols=213 Identities=26% Similarity=0.404 Sum_probs=186.7
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhce
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~i 1339 (1513)
..|+++||+++|++ ..+|+||||+|++||++||+||+|||||||+++|+|+++|++|+|.++|.|+...+ ...|+++
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 46999999999964 35999999999999999999999999999999999999999999999999998755 4578999
Q ss_pred EEEcCCCcccc-CcHhhccCCCC---CCCH----HHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHH
Q 000432 1340 GIIPQDPTLFD-GTVRGNLDPLV---QYSD----KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGR 1411 (1513)
Q Consensus 1340 siVpQdp~LF~-gTIR~NLdp~~---~~sd----eei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LAR 1411 (1513)
+|+||+|.+|. .|++||+..+. ..++ +++.++++.+++.+. .++.+ .+||+|||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENK-------ADAKV----GELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchH-------hcCch----hhCCHHHHHHHHHHH
Confidence 99999999986 69999997422 1232 345567777776543 44554 369999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhc
Q 000432 1412 TLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1412 ALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
||+.+|++|+|||||++||+.+...+.+.|++.. +++|||+++|.++.+.. ||||++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999875 47899999999999976 999999999999999999999765
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=364.96 Aligned_cols=211 Identities=27% Similarity=0.369 Sum_probs=187.1
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++|++++|+.. .+++|+||+|++||++||+|++|||||||+++|+|+++|.+|+|.+||.++.+.+. .|+.+++
T Consensus 1 l~~~~l~~~~~~~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 5799999999753 59999999999999999999999999999999999999999999999999987664 3688999
Q ss_pred EcCCCccccC-cHhhccCCC-------CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1342 IPQDPTLFDG-TVRGNLDPL-------VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1342 VpQdp~LF~g-TIR~NLdp~-------~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
+||+|.+|.+ |+++|+... ....++++.++++..++.++....| .+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999976 999999631 1122456788888888877765554 47999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcC
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE 1487 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~ 1487 (1513)
+++|++|+|||||+++|..+.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~ 222 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCC
Confidence 999999999999999999999999999987653 7999999999999876 8999999999999999999988754
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=362.00 Aligned_cols=200 Identities=26% Similarity=0.400 Sum_probs=176.1
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChH---Hhhhc
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLH---DLRSR 1338 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~---~LR~~ 1338 (1513)
|+++|++++|+.+ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+++.. .+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999533 3599999999999999999999999999999999999999999999999999887643 46889
Q ss_pred eEEEcCCCcccc-CcHhhccCCC----C---CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHH
Q 000432 1339 LGIIPQDPTLFD-GTVRGNLDPL----V---QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLG 1410 (1513)
Q Consensus 1339 isiVpQdp~LF~-gTIR~NLdp~----~---~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LA 1410 (1513)
++|+||+|.+|. .|+++|+... + +..+++++++++..++.+...+.| .+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999986 6999999642 1 112457888999998876654433 47999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCE
Q 000432 1411 RTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGR 1473 (1513)
Q Consensus 1411 RALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~ 1473 (1513)
|||+++|++|||||||++||+++...+.+.|++.. +++|+|+|+|+++.+.+ ||+|++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999998864 47999999999999987 89999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=367.12 Aligned_cols=219 Identities=21% Similarity=0.339 Sum_probs=192.1
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCCC--ChH
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP-----TMGSIIIDNVDITKI--GLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep-----~~G~I~IDGvdI~~i--~l~ 1333 (1513)
.+.+++.+++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++| ++|+|.+||.|+... ...
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4889999999964 3599999999999999999999999999999999999987 799999999998753 445
Q ss_pred HhhhceEEEcCCCccccCcHhhccCCCCC------CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHH
Q 000432 1334 DLRSRLGIIPQDPTLFDGTVRGNLDPLVQ------YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLF 1407 (1513)
Q Consensus 1334 ~LR~~isiVpQdp~LF~gTIR~NLdp~~~------~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl 1407 (1513)
.+|++++|+||+|.+|..|+++|+..... ..++++.++++.+++.+.+.. ...+...+||+|||||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHHH
Confidence 67889999999999999999999974311 123578889999998765543 23456678999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEe--------CCEEeEec
Q 000432 1408 CLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLS--------DGRIAEYD 1478 (1513)
Q Consensus 1408 ~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd--------~G~IvE~G 1478 (1513)
+||||++++|+||+|||||++||+.+...+.+.|++..+++|+|+|+|+++.+.+ ||||++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999988778899999999999876 99999996 89999999
Q ss_pred ChhHHHhcCC
Q 000432 1479 SPTKLLERED 1488 (1513)
Q Consensus 1479 tp~eLl~~~~ 1488 (1513)
+++++++++.
T Consensus 239 ~~~~~~~~~~ 248 (261)
T PRK14263 239 PTAQIFQNPR 248 (261)
T ss_pred CHHHHHhCCC
Confidence 9999987644
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=369.08 Aligned_cols=218 Identities=28% Similarity=0.439 Sum_probs=189.0
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCCCC-hHH
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP-----TMGSIIIDNVDITKIG-LHD 1334 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep-----~~G~I~IDGvdI~~i~-l~~ 1334 (1513)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 6899999999974 3599999999999999999999999999999999999986 6999999999998763 456
Q ss_pred hhhceEEEcCCCccccCcHhhccCCC----CCCCHHHH----HHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHH
Q 000432 1335 LRSRLGIIPQDPTLFDGTVRGNLDPL----VQYSDKQV----WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQL 1406 (1513)
Q Consensus 1335 LR~~isiVpQdp~LF~gTIR~NLdp~----~~~sdeei----~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQr 1406 (1513)
+|++++|+||+|.+|..|+++|+... ...+++++ .++++.+++.+.. ++.......+||||||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHHHH
Confidence 78999999999999999999999642 12344443 4456666665432 223445677899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHh
Q 000432 1407 FCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1407 l~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~ 1485 (1513)
++||||++++|+||||||||++||..+.+.+.+.|++..+++|||+|+|+++.+.+ ||||++|++|++++.|+++++.+
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667899999999999876 99999999999999999999987
Q ss_pred cC
Q 000432 1486 RE 1487 (1513)
Q Consensus 1486 ~~ 1487 (1513)
.+
T Consensus 252 ~~ 253 (276)
T PRK14271 252 SP 253 (276)
T ss_pred Cc
Confidence 64
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=364.86 Aligned_cols=222 Identities=26% Similarity=0.389 Sum_probs=187.2
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC--------h
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG--------L 1332 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~--------l 1332 (1513)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 3899999999964 35999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHhhhceEEEcCCCcccc-CcHhhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhH
Q 000432 1333 HDLRSRLGIIPQDPTLFD-GTVRGNLDPL----VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQ 1403 (1513)
Q Consensus 1333 ~~LR~~isiVpQdp~LF~-gTIR~NLdp~----~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQ 1403 (1513)
..+|++++++||+|.+|. .|+++|+... .... ++.+.++++..++.+. ......+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChHH
Confidence 567889999999999886 6999999631 1222 2345666776666543 223456899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChh
Q 000432 1404 RQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPT 1481 (1513)
Q Consensus 1404 RQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~ 1481 (1513)
|||++||||++.+|+||||||||++||+++.+.+.+.|++.. +++|+|+|+|+++.+.+ ||+|++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998765 37899999999999976 9999999999999999999
Q ss_pred HHHhcCC-hHHHHHH
Q 000432 1482 KLLERED-SFFSQLI 1495 (1513)
Q Consensus 1482 eLl~~~~-~~f~~l~ 1495 (1513)
++.+.+. ...++++
T Consensus 230 ~~~~~~~~~~~~~~~ 244 (250)
T PRK11264 230 ALFADPQQPRTRQFL 244 (250)
T ss_pred HHhcCCCCHHHHHHH
Confidence 9876533 3334444
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=373.86 Aligned_cols=215 Identities=26% Similarity=0.395 Sum_probs=184.0
Q ss_pred EEEEEEEEEEcCCC---CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCC----ChHH
Q 000432 1262 ISFHNLQIRYAEHL---PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKI----GLHD 1334 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~---~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i----~l~~ 1334 (1513)
|+++||+++|+... .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997532 3599999999999999999999999999999999999999999999999999764 3567
Q ss_pred hhhceEEEcCCC--ccccCcHhhccCCC---CCCCHHH----HHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHH
Q 000432 1335 LRSRLGIIPQDP--TLFDGTVRGNLDPL---VQYSDKQ----VWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405 (1513)
Q Consensus 1335 LR~~isiVpQdp--~LF~gTIR~NLdp~---~~~sdee----i~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQ 1405 (1513)
+|++++|+||+| .+|+.|+++|+.+. ...++++ +.++++..++.+. .......+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHHH
Confidence 889999999998 68899999999642 1223332 4456666666421 123345679999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHH
Q 000432 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKL 1483 (1513)
Q Consensus 1406 rl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eL 1483 (1513)
|++||||++++|++|||||||++||+++.+.+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998764 37899999999999865 999999999999999999998
Q ss_pred Hhc
Q 000432 1484 LER 1486 (1513)
Q Consensus 1484 l~~ 1486 (1513)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 765
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=364.66 Aligned_cols=211 Identities=25% Similarity=0.409 Sum_probs=179.5
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHH-hhhceE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHD-LRSRLG 1340 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~-LR~~is 1340 (1513)
|+++||+++|++. ++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+... .+++++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCCe--EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 5789999999743 5999999999999999999999999999999999999999999999999999887655 467899
Q ss_pred EEcCCCccccC-cHhhccCCC-CC--CCHHH-HHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHcc
Q 000432 1341 IIPQDPTLFDG-TVRGNLDPL-VQ--YSDKQ-VWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLK 1415 (1513)
Q Consensus 1341 iVpQdp~LF~g-TIR~NLdp~-~~--~sdee-i~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr 1415 (1513)
++||++.+|.+ |+++|+... .. .++++ ..++++..+ +++........+||||||||++||||+++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999986 999999632 11 11222 233333322 23333444556799999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1416 KSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1416 ~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
+|++|+|||||++||+.+.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 9999999999999999999999999988653 7899999999999986 9999999999999999999973
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=378.62 Aligned_cols=228 Identities=21% Similarity=0.367 Sum_probs=190.2
Q ss_pred eEEEEEEEEEEcC--CCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCC---CcEEEEcCeeCCCCChHHh
Q 000432 1261 TISFHNLQIRYAE--HLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPT---MGSIIIDNVDITKIGLHDL 1335 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~--~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~---~G~I~IDGvdI~~i~l~~L 1335 (1513)
.++++|++++|+. +...+|+||||+|++||++||||+||||||||+++|+|+++|. +|+|.+||.|+.+++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 5999999999963 2235999999999999999999999999999999999999996 9999999999999988776
Q ss_pred h----hceEEEcCCC--cccc-CcHhhccC----CCCCCCH----HHHHHHHHHcCCcHHHHhhhccccchhccCCCCCC
Q 000432 1336 R----SRLGIIPQDP--TLFD-GTVRGNLD----PLVQYSD----KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWS 1400 (1513)
Q Consensus 1336 R----~~isiVpQdp--~LF~-gTIR~NLd----p~~~~sd----eei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLS 1400 (1513)
| ++|++||||| .++. -|+.+|+. .....+. +++.++|+.+++.+ +. ..+......||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~-------~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE-------AR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-------hH-HHhcCCcccCC
Confidence 4 4799999999 4554 47777763 2222232 34566777776642 11 12345567899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEe
Q 000432 1401 VGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEY 1477 (1513)
Q Consensus 1401 gGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~ 1477 (1513)
||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999987654 7899999999999975 999999999999999
Q ss_pred cChhHHHhcCChHHHH-HHH
Q 000432 1478 DSPTKLLEREDSFFSQ-LIK 1496 (1513)
Q Consensus 1478 Gtp~eLl~~~~~~f~~-l~~ 1496 (1513)
|+++++.+++...|.+ |++
T Consensus 244 g~~~~i~~~p~~pyt~~l~~ 263 (330)
T PRK09473 244 GNARDVFYQPSHPYSIGLLN 263 (330)
T ss_pred CCHHHHHhCCCCHHHHHHHH
Confidence 9999999876655555 444
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=374.66 Aligned_cols=218 Identities=27% Similarity=0.402 Sum_probs=183.6
Q ss_pred CceEEEEEEEEEEcCCC---CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCC----C-
Q 000432 1259 VGTISFHNLQIRYAEHL---PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITK----I- 1330 (1513)
Q Consensus 1259 ~g~I~f~nvsf~Y~~~~---~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~----i- 1330 (1513)
.|.|+++|++++|+... .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 46899999999996532 259999999999999999999999999999999999999999999999999853 2
Q ss_pred ChHHhhhceEEEcCCC--ccccCcHhhccCCCC---CCCHH----HHHHHHHHcCCcHHHHhhhccccchhccCCCCCCh
Q 000432 1331 GLHDLRSRLGIIPQDP--TLFDGTVRGNLDPLV---QYSDK----QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSV 1401 (1513)
Q Consensus 1331 ~l~~LR~~isiVpQdp--~LF~gTIR~NLdp~~---~~sde----ei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSg 1401 (1513)
+...+|++++|+||+| .+|..|+++|+.+.. ..+.+ .+.++++..++.+ ........+|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~----------~~~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE----------DYVKRSPFELSG 153 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hHhcCChhhCCH
Confidence 4567889999999998 478889999996421 22332 3345555555521 112234567999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEec
Q 000432 1402 GQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYD 1478 (1513)
Q Consensus 1402 GQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~G 1478 (1513)
|||||++|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999987653 7899999999998865 9999999999999999
Q ss_pred ChhHHHhc
Q 000432 1479 SPTKLLER 1486 (1513)
Q Consensus 1479 tp~eLl~~ 1486 (1513)
+++++.+.
T Consensus 234 ~~~~~~~~ 241 (289)
T PRK13645 234 SPFEIFSN 241 (289)
T ss_pred CHHHHhcC
Confidence 99998764
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=346.30 Aligned_cols=172 Identities=35% Similarity=0.602 Sum_probs=162.9
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++|++++|+.+..++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+++.+.+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57899999997544469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000432 1342 IPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILV 1421 (1513)
Q Consensus 1342 VpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILi 1421 (1513)
+||+|.+|++|+++|+ ||||||||++||||++++|++|+
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 99999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhcCEEEEEeCCEE
Q 000432 1422 LDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVIDSDLVLVLSDGRI 1474 (1513)
Q Consensus 1422 LDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVLd~G~I 1474 (1513)
|||||++||+.+...+.+.|++.. +++|+|+++|+++.+..||+|++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999998764 47899999999999988999999999975
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=367.11 Aligned_cols=221 Identities=25% Similarity=0.432 Sum_probs=191.2
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCC-----CcEEEEcCeeCCC--CCh
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPT-----MGSIIIDNVDITK--IGL 1332 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~-----~G~I~IDGvdI~~--i~l 1332 (1513)
+.|+++||+++|+. +.+|+|+||+|++||.+||+|++|||||||+++|.|+++|+ +|+|.+||.|++. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 47999999999964 35999999999999999999999999999999999999985 8999999999853 345
Q ss_pred HHhhhceEEEcCCCccccCcHhhccCCC---CCC-C----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHH
Q 000432 1333 HDLRSRLGIIPQDPTLFDGTVRGNLDPL---VQY-S----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQR 1404 (1513)
Q Consensus 1333 ~~LR~~isiVpQdp~LF~gTIR~NLdp~---~~~-s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQR 1404 (1513)
..+|+.++++||++.+|..|++||+... ... + ++++.++++.+++.+++.. .....+.+||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 6788999999999999999999999632 111 2 2456778888888765543 23445678999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeC-----CEEeE
Q 000432 1405 QLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSD-----GRIAE 1476 (1513)
Q Consensus 1405 Qrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~-----G~IvE 1476 (1513)
||++||||++++|+||+|||||+++|.++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999998743 48999999999999876 899999999 99999
Q ss_pred ecChhHHHhcCCh
Q 000432 1477 YDSPTKLLEREDS 1489 (1513)
Q Consensus 1477 ~Gtp~eLl~~~~~ 1489 (1513)
.|+|+++.+++..
T Consensus 237 ~~~~~~~~~~~~~ 249 (261)
T PRK14258 237 FGLTKKIFNSPHD 249 (261)
T ss_pred eCCHHHHHhCCCC
Confidence 9999999876544
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=356.98 Aligned_cols=200 Identities=27% Similarity=0.408 Sum_probs=175.9
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++|++++|++. . .|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 5799999999642 2 39999999999999999999999999999999999999999999999987654 4678999
Q ss_pred EcCCCccccC-cHhhccCCCCC-------CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1342 IPQDPTLFDG-TVRGNLDPLVQ-------YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1342 VpQdp~LF~g-TIR~NLdp~~~-------~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
+||+|.+|.+ |+++|+..... .+++++.++++.+++.+...+.| .+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999976 99999974211 23557888999999876655544 37999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEec
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYD 1478 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~G 1478 (1513)
+++|++|+|||||++||.++...+.+.|++.. .++|+|+|+|+++.+.. ||+|++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999865 37899999999999976 9999999999998865
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=372.05 Aligned_cols=215 Identities=29% Similarity=0.447 Sum_probs=184.2
Q ss_pred eEEEEEEEEEEcCCC---CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCC----ChH
Q 000432 1261 TISFHNLQIRYAEHL---PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKI----GLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~---~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i----~l~ 1333 (1513)
.|+++|++++|++.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999997432 3599999999999999999999999999999999999999999999999998753 346
Q ss_pred HhhhceEEEcCCC--ccccCcHhhccCCC---CCCCH----HHHHHHHHHcCCc-HHHHhhhccccchhccCCCCCChhH
Q 000432 1334 DLRSRLGIIPQDP--TLFDGTVRGNLDPL---VQYSD----KQVWEALDKCQLG-DLVRAKEEKLDSTVAENGENWSVGQ 1403 (1513)
Q Consensus 1334 ~LR~~isiVpQdp--~LF~gTIR~NLdp~---~~~sd----eei~~aL~~~~l~-~~I~~lp~gLdt~V~e~G~nLSgGQ 1403 (1513)
..|++++++||+| .+|..|+++|+... ...+. +.+.++++.+++. ++. .....+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-----------SKSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-----------hCCcccCCHHH
Confidence 6788999999998 58888999999631 12222 3456677777775 332 22346799999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChh
Q 000432 1404 RQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPT 1481 (1513)
Q Consensus 1404 RQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~ 1481 (1513)
|||++|||||+.+|++|||||||++||+++...+.+.|++.. ++.|||+++|+++.+.. ||+|++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998864 47899999999999865 9999999999999999999
Q ss_pred HHHhc
Q 000432 1482 KLLER 1486 (1513)
Q Consensus 1482 eLl~~ 1486 (1513)
++.+.
T Consensus 231 ~~~~~ 235 (287)
T PRK13641 231 EIFSD 235 (287)
T ss_pred HHhcC
Confidence 98764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=361.81 Aligned_cols=210 Identities=27% Similarity=0.428 Sum_probs=184.4
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++|++++|++. ++|+|+||+|.+||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. .|+.++|
T Consensus 1 i~i~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECCe--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 5799999999743 59999999999999999999999999999999999999999999999999987653 4788999
Q ss_pred EcCCCccccC-cHhhccCCCC---CC----CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1342 IPQDPTLFDG-TVRGNLDPLV---QY----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1342 VpQdp~LF~g-TIR~NLdp~~---~~----sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
+||+|.+|.+ |+++|+.... .. .++++.++++..++.+...+. ..+||+||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999996421 11 234567788888776554332 357999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhc
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
+++|++++|||||++||.++.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|+++|.|+++++++.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999987654 7999999999999876 999999999999999999999865
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=366.68 Aligned_cols=218 Identities=24% Similarity=0.433 Sum_probs=187.2
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCC--CChH
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP-----TMGSIIIDNVDITK--IGLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep-----~~G~I~IDGvdI~~--i~l~ 1333 (1513)
.++++||+++|++. ++|+|+||+|++||.+||+|++|||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 58999999999743 599999999999999999999999999999999999974 69999999999864 4456
Q ss_pred HhhhceEEEcCCCcccc-CcHhhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHH
Q 000432 1334 DLRSRLGIIPQDPTLFD-GTVRGNLDPL----VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQR 1404 (1513)
Q Consensus 1334 ~LR~~isiVpQdp~LF~-gTIR~NLdp~----~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQR 1404 (1513)
.+|+.++++||++.+|. .|+++|+... +..+ ++++.++++.+++.+.+. ........+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHH
Confidence 78899999999999997 5999999631 1111 345677888888765432 122344568999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEe------CCEEeEe
Q 000432 1405 QLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLS------DGRIAEY 1477 (1513)
Q Consensus 1405 Qrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd------~G~IvE~ 1477 (1513)
||++||||++++|++|+|||||++||+.+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999999999999999987667899999999999865 99999997 8999999
Q ss_pred cChhHHHhcC
Q 000432 1478 DSPTKLLERE 1487 (1513)
Q Consensus 1478 Gtp~eLl~~~ 1487 (1513)
|++++++.++
T Consensus 235 ~~~~~~~~~~ 244 (258)
T PRK14241 235 DDTEKIFSNP 244 (258)
T ss_pred CCHHHHHhCc
Confidence 9999998754
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=363.95 Aligned_cols=218 Identities=26% Similarity=0.437 Sum_probs=189.4
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCC-CCChHH
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP-----TMGSIIIDNVDIT-KIGLHD 1334 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep-----~~G~I~IDGvdI~-~i~l~~ 1334 (1513)
.++++|++++|++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++| ++|+|.+||.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4899999999974 3599999999999999999999999999999999999986 5999999999986 456678
Q ss_pred hhhceEEEcCCCccccCcHhhccCCC---CCC-C----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHH
Q 000432 1335 LRSRLGIIPQDPTLFDGTVRGNLDPL---VQY-S----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQL 1406 (1513)
Q Consensus 1335 LR~~isiVpQdp~LF~gTIR~NLdp~---~~~-s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQr 1406 (1513)
+|+.++|+||+|.+|.+|+++|+... ... + ++++.++++.+++.+.+. ........+||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHHH
Confidence 89999999999999999999999642 111 1 234566788888765442 22344556899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHh
Q 000432 1407 FCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1407 l~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~ 1485 (1513)
++||||++.+|+||||||||++||..+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999988777999999999999887 99999999999999999999876
Q ss_pred cC
Q 000432 1486 RE 1487 (1513)
Q Consensus 1486 ~~ 1487 (1513)
++
T Consensus 234 ~~ 235 (249)
T PRK14253 234 NP 235 (249)
T ss_pred CC
Confidence 53
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=368.87 Aligned_cols=214 Identities=21% Similarity=0.371 Sum_probs=189.4
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhce
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~i 1339 (1513)
-.|+++||+++|++ ..+|+|+||++++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999974 3599999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEcCCCcccc-CcHhhccCCCC-----------CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHH
Q 000432 1340 GIIPQDPTLFD-GTVRGNLDPLV-----------QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLF 1407 (1513)
Q Consensus 1340 siVpQdp~LF~-gTIR~NLdp~~-----------~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl 1407 (1513)
+|+||++.+|. .|+++|+.+.. +..+++++++++..++.+...+ ...+||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHHH
Confidence 99999998875 69999996421 1123467888888888654332 3467999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1408 CLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1408 ~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
+||||++++|++|+|||||++||+++...+.+.|++..+ ++|+|+++|+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999988643 7899999999998876 9999999999999999999987
Q ss_pred hc
Q 000432 1485 ER 1486 (1513)
Q Consensus 1485 ~~ 1486 (1513)
..
T Consensus 233 ~~ 234 (265)
T PRK10253 233 TA 234 (265)
T ss_pred hH
Confidence 53
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=362.27 Aligned_cols=214 Identities=23% Similarity=0.352 Sum_probs=180.5
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHH-hhhce
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHD-LRSRL 1339 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~-LR~~i 1339 (1513)
.|+++|++++|+. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+..+ .|+++
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999964 35999999999999999999999999999999999999999999999999999887655 67889
Q ss_pred EEEcCCCccccC-cHhhccCCCCC-CCHHH----HHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1340 GIIPQDPTLFDG-TVRGNLDPLVQ-YSDKQ----VWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1340 siVpQdp~LF~g-TIR~NLdp~~~-~sdee----i~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
+++||++.+|.+ |+++|+..... .+.++ +.++++.. + +++.........||||||||++||||+
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~---------~-~l~~~~~~~~~~LS~G~~qrl~la~al 152 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELF---------P-RLHERRIQRAGTMSGGEQQMLAIGRAL 152 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHH---------H-HHHHHHhCchhhCCHHHHHHHHHHHHH
Confidence 999999999985 99999964211 12222 22333322 1 112122234568999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhc
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
+++|+||+|||||++||+++.+.+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 153 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999998764 48999999999998765 999999999999999999999754
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=360.22 Aligned_cols=206 Identities=20% Similarity=0.297 Sum_probs=179.9
Q ss_pred eEEEEEEEEEEcCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHH---h
Q 000432 1261 TISFHNLQIRYAEHL--PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHD---L 1335 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~--~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~---L 1335 (1513)
.|+++|++++|+++. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+..+ .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 599999999997532 25999999999999999999999999999999999999999999999999998887654 2
Q ss_pred -hhceEEEcCCCccccC-cHhhccCCC---CCC----CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHH
Q 000432 1336 -RSRLGIIPQDPTLFDG-TVRGNLDPL---VQY----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQL 1406 (1513)
Q Consensus 1336 -R~~isiVpQdp~LF~g-TIR~NLdp~---~~~----sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQr 1406 (1513)
+++++++||+|.+|.+ |+++|+... ... ..+++.++++..++.+...+.| .+||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3689999999999875 999999631 111 2356788888888876654443 4699999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhcCEEEEEeCCEEeEe
Q 000432 1407 FCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVIDSDLVLVLSDGRIAEY 1477 (1513)
Q Consensus 1407 l~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~ 1477 (1513)
++|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|||+|+|+++.+..||+|++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999987642 7899999999999988999999999999874
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=372.00 Aligned_cols=221 Identities=28% Similarity=0.489 Sum_probs=191.5
Q ss_pred CCceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCCC--
Q 000432 1258 DVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PTMGSIIIDNVDITKI-- 1330 (1513)
Q Consensus 1258 ~~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e-----p~~G~I~IDGvdI~~i-- 1330 (1513)
.+..|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.++...
T Consensus 42 ~~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 42 GDAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred CCceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3457999999999975 359999999999999999999999999999999999986 6899999999999753
Q ss_pred ChHHhhhceEEEcCCCccccCcHhhccCCCC--------------------CCCHHHHHHHHHHcCCcHHHHhhhccccc
Q 000432 1331 GLHDLRSRLGIIPQDPTLFDGTVRGNLDPLV--------------------QYSDKQVWEALDKCQLGDLVRAKEEKLDS 1390 (1513)
Q Consensus 1331 ~l~~LR~~isiVpQdp~LF~gTIR~NLdp~~--------------------~~sdeei~~aL~~~~l~~~I~~lp~gLdt 1390 (1513)
+...+|++++|+||++.+|.+|+++|+.... +..++++.++++.+++.+.+ ++
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~ 192 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV-------ND 192 (305)
T ss_pred cHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh-------hH
Confidence 4667889999999999999999999996320 01234577888888775443 23
Q ss_pred hhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEE-EE
Q 000432 1391 TVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLV-LV 1468 (1513)
Q Consensus 1391 ~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrI-lV 1468 (1513)
.......+||||||||++|||||+++|+||||||||++||..+...+.+.|++..++.|+|+|+|+++.+.. ||+| ++
T Consensus 193 ~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 193 RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred HhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 445667889999999999999999999999999999999999999999999988777899999999999876 9997 57
Q ss_pred EeCCEEeEecChhHHHhcC
Q 000432 1469 LSDGRIAEYDSPTKLLERE 1487 (1513)
Q Consensus 1469 Ld~G~IvE~Gtp~eLl~~~ 1487 (1513)
|++|++++.|+++++.+.+
T Consensus 273 l~~G~i~~~g~~~~~~~~~ 291 (305)
T PRK14264 273 LTGGELVEYDDTDKIFENP 291 (305)
T ss_pred ecCCEEEEeCCHHHHHhCc
Confidence 8999999999999997653
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=381.31 Aligned_cols=217 Identities=23% Similarity=0.381 Sum_probs=190.3
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhce
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~i 1339 (1513)
..|+++|++++|+. ..+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++.+++. .|+++
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 36999999999964 359999999999999999999999999999999999999999999999999987764 47789
Q ss_pred EEEcCCCccccC-cHhhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHH
Q 000432 1340 GIIPQDPTLFDG-TVRGNLDPL---VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGR 1411 (1513)
Q Consensus 1340 siVpQdp~LF~g-TIR~NLdp~---~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LAR 1411 (1513)
+||+|++.||.. |+++|+.+. ...+ ++++.++++..++.++..+.| .+||||||||++|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999975 999999742 1222 345678888888876655544 368999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcCC
Q 000432 1412 TLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERED 1488 (1513)
Q Consensus 1412 ALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~~ 1488 (1513)
||+++|++|+||||||+||..+...+.+.|++.. .+.|+|+|||+++.+.. ||||+||++|++++.|+|+++.+++.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 9999999999999999999999999988877654 37899999999998765 99999999999999999999998876
Q ss_pred hHH
Q 000432 1489 SFF 1491 (1513)
Q Consensus 1489 ~~f 1491 (1513)
..|
T Consensus 243 ~~~ 245 (377)
T PRK11607 243 TRY 245 (377)
T ss_pred cHH
Confidence 554
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=366.37 Aligned_cols=220 Identities=20% Similarity=0.407 Sum_probs=190.3
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCC--CCh
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP-----TMGSIIIDNVDITK--IGL 1332 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep-----~~G~I~IDGvdI~~--i~l 1332 (1513)
-.|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 19 SVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred ceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 37999999999974 3599999999999999999999999999999999999864 69999999999864 344
Q ss_pred HHhhhceEEEcCCCccccCcHhhccCCCC---C---CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHH
Q 000432 1333 HDLRSRLGIIPQDPTLFDGTVRGNLDPLV---Q---YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQL 1406 (1513)
Q Consensus 1333 ~~LR~~isiVpQdp~LF~gTIR~NLdp~~---~---~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQr 1406 (1513)
..+|++++|+||++.+|++|+++|+.... . ..++++.++++.+++.+.+.. ........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHHH
Confidence 56789999999999999999999996421 1 124556778888888665432 2234457899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEe---------CCEEeE
Q 000432 1407 FCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLS---------DGRIAE 1476 (1513)
Q Consensus 1407 l~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd---------~G~IvE 1476 (1513)
++|||||+++|+||||||||++||..+...+.+.|++..+++|||+|+|+++.+.. ||+|++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988778999999999999875 99999997 899999
Q ss_pred ecChhHHHhcCC
Q 000432 1477 YDSPTKLLERED 1488 (1513)
Q Consensus 1477 ~Gtp~eLl~~~~ 1488 (1513)
.|+++++.+++.
T Consensus 250 ~g~~~~~~~~~~ 261 (274)
T PRK14265 250 FSPTEQMFGSPQ 261 (274)
T ss_pred eCCHHHHHhCCC
Confidence 999999987643
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=346.45 Aligned_cols=201 Identities=29% Similarity=0.460 Sum_probs=169.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------EE
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------KA 698 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------~a 698 (1513)
|+|+|+|+.|. ++.+++|+||+|++||+++++|||||||||+|++|.++++|++|+|.++|. +|
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 78999999997 367999999999999999999999999999999999999999999999994 59
Q ss_pred EEcCCCccc-CccHHHHHccCC---CCCchHHHHH----HHHHhcHH-HHhhccCCCCccccCCCCCCChHHHHHHHHHH
Q 000432 699 YVPQSPWIL-TGNIRENILFGN---QYDSCKYDRT----VEACALVK-DFELFASGDLTEIGERGINMSGGQKQRIQIAR 769 (1513)
Q Consensus 699 yv~Q~~~l~-~~ti~eNI~fg~---~~~~~~~~~v----~~~~~l~~-d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lAR 769 (1513)
||-|+.-|| +-||.|||.+-- .+++++.++. ++..+|.+ ++ .......|||||+|||.+||
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~----------~~RyP~eLSGGQQQRVGv~R 148 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEY----------ADRYPHELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHH----------hhcCchhcCcchhhHHHHHH
Confidence 999999999 569999998753 3455554433 33333332 11 11235689999999999999
Q ss_pred HHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCc-cccCCEEEEEeCCeEEEecChHHHHhcC
Q 000432 770 AVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEF-LPAADIILVMENGRIAQAGRFEELLKQN 846 (1513)
Q Consensus 770 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~-l~~~d~i~vl~~G~i~~~g~~~~l~~~~ 846 (1513)
||..+|+|+|+||||+||||-+.+++-++ +..+. -+||+|+|||+++. ++-+|+|.+|++|+|++.|++++++++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e-~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEE-IKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHH-HHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 99999999999999999999998877444 44332 38999999999987 6779999999999999999999999764
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=364.54 Aligned_cols=213 Identities=25% Similarity=0.378 Sum_probs=187.3
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++|++++|+. ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.+++.++...++++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 3789999999964 35999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEcCCCcc-ccCcHhhccCCCC--C-----CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHH
Q 000432 1341 IIPQDPTL-FDGTVRGNLDPLV--Q-----YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRT 1412 (1513)
Q Consensus 1341 iVpQdp~L-F~gTIR~NLdp~~--~-----~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARA 1412 (1513)
++||++.+ +..|+++|+.... . ..++++.++++..++.+...+ ....||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGR-----------DYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHH
Confidence 99999987 6789999996421 1 123457788888887654332 235799999999999999
Q ss_pred Hc------cCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHH
Q 000432 1413 LL------KKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKL 1483 (1513)
Q Consensus 1413 LL------r~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eL 1483 (1513)
|+ ++|++|+|||||++||+++...+.+.|++.. +++|||+++|+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999998764 47899999999999875 999999999999999999998
Q ss_pred Hhc
Q 000432 1484 LER 1486 (1513)
Q Consensus 1484 l~~ 1486 (1513)
.+.
T Consensus 229 ~~~ 231 (258)
T PRK13548 229 LTP 231 (258)
T ss_pred hCh
Confidence 764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=367.83 Aligned_cols=227 Identities=25% Similarity=0.353 Sum_probs=190.9
Q ss_pred eEEEEEEEEEEcCC-------CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChH
Q 000432 1261 TISFHNLQIRYAEH-------LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~-------~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~ 1333 (1513)
.|+++||+++|+.. ..++|+|+||+|++||++||+||+|||||||+++|.|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999521 23599999999999999999999999999999999999999999999999999866666
Q ss_pred HhhhceEEEcCCCc--cccC-cHhhccCC----CCC----CCHHHHHHHHHHcCCc-HHHHhhhccccchhccCCCCCCh
Q 000432 1334 DLRSRLGIIPQDPT--LFDG-TVRGNLDP----LVQ----YSDKQVWEALDKCQLG-DLVRAKEEKLDSTVAENGENWSV 1401 (1513)
Q Consensus 1334 ~LR~~isiVpQdp~--LF~g-TIR~NLdp----~~~----~sdeei~~aL~~~~l~-~~I~~lp~gLdt~V~e~G~nLSg 1401 (1513)
..|++++|+||+|. ++.. |+.+|+.. ... ..++++.++++.+++. +.. +. ...+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-------SY----YPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH-------hc----CchhcCH
Confidence 66778999999985 4443 78888742 111 1235678899999984 322 22 2357999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEec
Q 000432 1402 GQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYD 1478 (1513)
Q Consensus 1402 GQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~G 1478 (1513)
|||||++||||++++|+||||||||++||+++...+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999864 27899999999999987 9999999999999999
Q ss_pred ChhHHHhcC-ChHHHHHHHHH
Q 000432 1479 SPTKLLERE-DSFFSQLIKEY 1498 (1513)
Q Consensus 1479 tp~eLl~~~-~~~f~~l~~~~ 1498 (1513)
+++++.+++ +..+++++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGH 253 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhc
Confidence 999998764 35566676643
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=361.54 Aligned_cols=210 Identities=26% Similarity=0.409 Sum_probs=185.5
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++|++++|+. + +|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+++++
T Consensus 1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 578999999964 3 8999999999999999999999999999999999999999999999999987654 3789999
Q ss_pred EcCCCcccc-CcHhhccCCC---CCC----CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1342 IPQDPTLFD-GTVRGNLDPL---VQY----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1342 VpQdp~LF~-gTIR~NLdp~---~~~----sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
+||++.+|. .|+++|+... ... .++++.++++.+++.+++.+.+ .+||||||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHH
Confidence 999999995 6999999631 111 2346778888888877655443 46999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcC
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE 1487 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~ 1487 (1513)
+++|++|+|||||++||..+.+.+.+.+++..+ ++|+|+++|+++.+.+ ||+|++|++|++++.|+++++.+.+
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 999999999999999999999999999988643 7999999999999886 9999999999999999999998764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=369.72 Aligned_cols=222 Identities=26% Similarity=0.416 Sum_probs=189.0
Q ss_pred CceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEEcCeeCCCC--C
Q 000432 1259 VGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-----PTMGSIIIDNVDITKI--G 1331 (1513)
Q Consensus 1259 ~g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e-----p~~G~I~IDGvdI~~i--~ 1331 (1513)
...|+++||+++|+.. ++|+|+||+|++||++||+|++|||||||+++|.|+.+ |++|+|.+||.++... +
T Consensus 37 ~~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 37 KPHVVAKNFSIYYGEF--EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred ceEEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 3469999999999642 59999999999999999999999999999999999865 4999999999998653 3
Q ss_pred hHHhhhceEEEcCCCccccCcHhhccCCCC---CC-C----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhH
Q 000432 1332 LHDLRSRLGIIPQDPTLFDGTVRGNLDPLV---QY-S----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQ 1403 (1513)
Q Consensus 1332 l~~LR~~isiVpQdp~LF~gTIR~NLdp~~---~~-s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQ 1403 (1513)
...+|++++|+||+|.+|.+|+++|+.... .. + ++++.++++..++.+.+. +.+ ......|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~----~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---DRL----DKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---hHh----hCChhhCCHHH
Confidence 346789999999999999999999996421 11 1 235667788877754332 122 34456799999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhH
Q 000432 1404 RQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTK 1482 (1513)
Q Consensus 1404 RQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~e 1482 (1513)
|||++|||||+++|++|||||||++||.++...+.+.|++..+++|||+++|+++.+.+ ||+|++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999876 99999999999999999999
Q ss_pred HHhcCCh
Q 000432 1483 LLEREDS 1489 (1513)
Q Consensus 1483 Ll~~~~~ 1489 (1513)
+.+++..
T Consensus 268 ~~~~~~~ 274 (286)
T PRK14275 268 LFTNPKD 274 (286)
T ss_pred HHhCCCc
Confidence 9876543
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=370.04 Aligned_cols=213 Identities=28% Similarity=0.414 Sum_probs=185.0
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCC--CChHHhhhce
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITK--IGLHDLRSRL 1339 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~--i~l~~LR~~i 1339 (1513)
|+++||+++|+.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.+++. .+...+|+++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 7899999999643 359999999999999999999999999999999999999999999999999853 3345688999
Q ss_pred EEEcCCC--ccccCcHhhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHH
Q 000432 1340 GIIPQDP--TLFDGTVRGNLDPLV---QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLG 1410 (1513)
Q Consensus 1340 siVpQdp--~LF~gTIR~NLdp~~---~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LA 1410 (1513)
+|+||+| .+|..|+++|+.... ..+ .+++.++++.+++.++... . ..+||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-------~----~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENK-------P----PHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcC-------C----hhhCCHHHHHHHHHH
Confidence 9999998 578899999996311 122 2456778888888654322 2 347999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhc
Q 000432 1411 RTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1411 RALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
||++++|++|||||||++||+.+...+.+.|++.. +++|||+++|+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998865 37899999999999875 999999999999999999998764
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=363.44 Aligned_cols=203 Identities=26% Similarity=0.397 Sum_probs=179.4
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++. .+|++++
T Consensus 12 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~ 84 (257)
T PRK11247 12 PLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR 84 (257)
T ss_pred cEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence 5999999999964 35999999999999999999999999999999999999999999999998763 5688999
Q ss_pred EEcCCCcccc-CcHhhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCC
Q 000432 1341 IIPQDPTLFD-GTVRGNLDPL-VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSS 1418 (1513)
Q Consensus 1341 iVpQdp~LF~-gTIR~NLdp~-~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ 1418 (1513)
|+||+|.+|. .|+++|+.+. ....++++.++++..++.+...+ ...+||||||||++|||||+++|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANE-----------WPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999987 6999999753 22235678888999888665432 346799999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChh
Q 000432 1419 ILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPT 1481 (1513)
Q Consensus 1419 ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~ 1481 (1513)
+|||||||++||+.+...+.+.|++.. .++|+|+|+|+++.+.. ||+|++|++|++++.|+.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999998764 37899999999999865 9999999999999988754
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=364.40 Aligned_cols=222 Identities=25% Similarity=0.408 Sum_probs=186.8
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCC-----CcEEEEcCeeCCC--CChH
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPT-----MGSIIIDNVDITK--IGLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~-----~G~I~IDGvdI~~--i~l~ 1333 (1513)
.++++||+++|++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|+ +|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 4889999999964 35999999999999999999999999999999999999874 8999999999975 3455
Q ss_pred HhhhceEEEcCCCccccC-cHhhccCCC---CCC-CHHH----HHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHH
Q 000432 1334 DLRSRLGIIPQDPTLFDG-TVRGNLDPL---VQY-SDKQ----VWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQR 1404 (1513)
Q Consensus 1334 ~LR~~isiVpQdp~LF~g-TIR~NLdp~---~~~-sdee----i~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQR 1404 (1513)
.+|++++|+||+|.+|.+ |+++|+... ... .+++ ..+.++..++.+.+ ++.++.+ ..+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKTP----ATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcCC----cccCCHHHH
Confidence 788999999999999985 999999631 111 2333 33345555554432 2334443 467999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHH
Q 000432 1405 QLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKL 1483 (1513)
Q Consensus 1405 Qrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eL 1483 (1513)
||++||||++++|+||+|||||++||..+...+.+.|++..+++|+|+++|+++.+.+ ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987678999999999999986 999999999999999999999
Q ss_pred HhcCChHH
Q 000432 1484 LEREDSFF 1491 (1513)
Q Consensus 1484 l~~~~~~f 1491 (1513)
++++...+
T Consensus 235 ~~~~~~~~ 242 (252)
T PRK14272 235 FTNPRDER 242 (252)
T ss_pred HhCcCcHH
Confidence 87754444
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=369.27 Aligned_cols=212 Identities=26% Similarity=0.417 Sum_probs=183.5
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCC--CCChHHhhhce
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDIT--KIGLHDLRSRL 1339 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~--~i~l~~LR~~i 1339 (1513)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. +.+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 789999999964 35999999999999999999999999999999999999999999999999985 34456788999
Q ss_pred EEEcCCCc--cccCcHhhccCCC---CCCCH----HHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHH
Q 000432 1340 GIIPQDPT--LFDGTVRGNLDPL---VQYSD----KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLG 1410 (1513)
Q Consensus 1340 siVpQdp~--LF~gTIR~NLdp~---~~~sd----eei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LA 1410 (1513)
+++||+|. +|..|+.+|+... ...++ +++.++++..++.++. +. ...+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-------HQ----PIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-------cC----CchhCCHHHHHHHHHH
Confidence 99999985 6778999998642 11222 3456678888876543 22 3457999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhc
Q 000432 1411 RTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1411 RALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
|||+.+|+||||||||++||+.+...+.+.|++.. +++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998764 47899999999999965 999999999999999999998765
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=358.47 Aligned_cols=197 Identities=29% Similarity=0.434 Sum_probs=170.4
Q ss_pred EEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEE
Q 000432 1263 SFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGII 1342 (1513)
Q Consensus 1263 ~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiV 1342 (1513)
+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 46899999964 35999999999999999999999999999999999999999999999998874 578899999
Q ss_pred cCCCcc---ccCcHhhccCCCCC-----------CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHH
Q 000432 1343 PQDPTL---FDGTVRGNLDPLVQ-----------YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFC 1408 (1513)
Q Consensus 1343 pQdp~L---F~gTIR~NLdp~~~-----------~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~ 1408 (1513)
||+|.+ |+.|+++|+..... ..++++.++++..++.++..+ ...+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHH
Confidence 999986 66899999963211 123567888888888665433 23579999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEec
Q 000432 1409 LGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYD 1478 (1513)
Q Consensus 1409 LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~G 1478 (1513)
|||||+++|++|||||||++||+++...+.+.|++.. +++|+|+|+|+++.+.. ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999998764 57899999999999976 8999999986 55554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=357.41 Aligned_cols=208 Identities=25% Similarity=0.368 Sum_probs=184.0
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++||+++|++. ..|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+. .+++++|
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 7899999999642 249999999999999999999999999999999999999999999999987654 3678999
Q ss_pred EcCCCccccC-cHhhccCCC-C-C-----CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1342 IPQDPTLFDG-TVRGNLDPL-V-Q-----YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1342 VpQdp~LF~g-TIR~NLdp~-~-~-----~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
+||+|.+|.+ |+++|+... . . ..++++.++++..++.+.+.+.| ..||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999986 999999732 1 1 12456888999999877766554 36999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhc
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
+++|++|||||||++||.++.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++...
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999988653 7899999999999876 999999999999999999999865
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=363.20 Aligned_cols=221 Identities=23% Similarity=0.385 Sum_probs=189.1
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC--C---CCcEEEEcCeeCCC--CChH
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE--P---TMGSIIIDNVDITK--IGLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e--p---~~G~I~IDGvdI~~--i~l~ 1333 (1513)
.|+++||+++|+. .++|+|+||+|++||.+||+|++|||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999974 359999999999999999999999999999999999975 4 59999999999864 3455
Q ss_pred HhhhceEEEcCCCccccCcHhhccCCC---CCC-----CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHH
Q 000432 1334 DLRSRLGIIPQDPTLFDGTVRGNLDPL---VQY-----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405 (1513)
Q Consensus 1334 ~LR~~isiVpQdp~LF~gTIR~NLdp~---~~~-----sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQ 1405 (1513)
.+|++++++||+|.+|..|+++|+... ... .++++.++++.+++.+.+. ........+||+||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHHH
Confidence 678899999999999999999999631 111 1345677788887754332 2234455789999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1406 rl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
|++||||++++|+||||||||++||.++.+.+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|++.+..
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988667899999999999876 9999999999999999999998
Q ss_pred hcCChH
Q 000432 1485 EREDSF 1490 (1513)
Q Consensus 1485 ~~~~~~ 1490 (1513)
.++...
T Consensus 236 ~~~~~~ 241 (252)
T PRK14255 236 LNPKEK 241 (252)
T ss_pred cCCCCh
Confidence 765443
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=378.84 Aligned_cols=205 Identities=21% Similarity=0.316 Sum_probs=178.1
Q ss_pred cceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCe----eCCCCChHHhh----hceEEEcCCCcc
Q 000432 1277 SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNV----DITKIGLHDLR----SRLGIIPQDPTL 1348 (1513)
Q Consensus 1277 ~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGv----dI~~i~l~~LR----~~isiVpQdp~L 1348 (1513)
.+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|++||. |+...+.+.+| ++++||||++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 4899999999999999999999999999999999999999999999996 77777665553 589999999999
Q ss_pred cc-CcHhhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEE
Q 000432 1349 FD-GTVRGNLDPL---VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSIL 1420 (1513)
Q Consensus 1349 F~-gTIR~NLdp~---~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~IL 1420 (1513)
|+ .|+++|+... ...+ .+++.++++.+++.++....| .+||||||||++|||||+++|+||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 97 6999999632 1122 245678899999877654433 369999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcCChHHH
Q 000432 1421 VLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDSFFS 1492 (1513)
Q Consensus 1421 iLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~ 1492 (1513)
+||||||+||+.+...+++.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|++++++.++...|.
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~ 261 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYV 261 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHH
Confidence 99999999999999999999988653 7899999999999855 999999999999999999999877544333
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=351.79 Aligned_cols=199 Identities=35% Similarity=0.580 Sum_probs=168.4
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC----------eEEEE
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG----------TKAYV 700 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g----------~~ayv 700 (1513)
.|+++|++|+|+.+ ++|+||||++++|++++|+||||||||||+++|+|+++|.+|+|.+.| ++|||
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYV 80 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYV 80 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEc
Confidence 59999999999742 699999999999999999999999999999999999999999999876 48999
Q ss_pred cCCC---cccCccHHHHHccCCCCC-----------chHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 000432 701 PQSP---WILTGNIRENILFGNQYD-----------SCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766 (1513)
Q Consensus 701 ~Q~~---~l~~~ti~eNI~fg~~~~-----------~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~ 766 (1513)
||.. |-|..||+|-+.+|.... .++.+++++..++. |+. +..|| .|||||+|||-
T Consensus 81 PQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~------~r~i~----~LSGGQ~QRV~ 149 (254)
T COG1121 81 PQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLR------DRQIG----ELSGGQKQRVL 149 (254)
T ss_pred CcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhh------CCccc----ccCcHHHHHHH
Confidence 9964 889999999999985322 24455555555554 222 12344 59999999999
Q ss_pred HHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 000432 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELLK 844 (1513)
Q Consensus 767 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~l~~ 844 (1513)
|||||.++||+|+|||||+++|+.++..++ +++..+. +|+||++|||+++.+. .+|+|+.| |+++...|++++..+
T Consensus 150 lARAL~~~p~lllLDEP~~gvD~~~~~~i~-~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 150 LARALAQNPDLLLLDEPFTGVDVAGQKEIY-DLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred HHHHhccCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 999999999999999999999999988876 4666654 3899999999999865 59999999 677889999999875
Q ss_pred c
Q 000432 845 Q 845 (1513)
Q Consensus 845 ~ 845 (1513)
.
T Consensus 228 ~ 228 (254)
T COG1121 228 E 228 (254)
T ss_pred H
Confidence 4
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=364.33 Aligned_cols=213 Identities=22% Similarity=0.353 Sum_probs=182.5
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHh-hhce
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL-RSRL 1339 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~L-R~~i 1339 (1513)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 5999999999964 359999999999999999999999999999999999999999999999999998877665 4569
Q ss_pred EEEcCCCccccC-cHhhccCCCCC----------------C--C----HHHHHHHHHHcCCcHHHHhhhccccchhccCC
Q 000432 1340 GIIPQDPTLFDG-TVRGNLDPLVQ----------------Y--S----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENG 1396 (1513)
Q Consensus 1340 siVpQdp~LF~g-TIR~NLdp~~~----------------~--s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G 1396 (1513)
+++||+|.+|.+ |+++|+..... . . .+++.++++..++. .......
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~ 151 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-----------EHANRQA 151 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-----------hhhhCCh
Confidence 999999999986 99999974210 0 0 12344445555443 3334455
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCE
Q 000432 1397 ENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGR 1473 (1513)
Q Consensus 1397 ~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~ 1473 (1513)
.+||||||||++||||++.+|+||||||||++||+++.+.+.+.|++..+ ++|||+++|+++.+.+ ||+|++|++|+
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 231 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 78999999999999999999999999999999999999999999987643 7899999999999976 99999999999
Q ss_pred EeEecChhHHHhc
Q 000432 1474 IAEYDSPTKLLER 1486 (1513)
Q Consensus 1474 IvE~Gtp~eLl~~ 1486 (1513)
+++.|+++++.++
T Consensus 232 i~~~~~~~~~~~~ 244 (255)
T PRK11300 232 PLANGTPEEIRNN 244 (255)
T ss_pred EEecCCHHHHhhC
Confidence 9999999998754
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=358.12 Aligned_cols=209 Identities=24% Similarity=0.348 Sum_probs=182.8
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++||+++|+. .++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+++...+|++++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999964 35999999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEcCCCccccCcHhhccCCC----CC-CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHcc
Q 000432 1341 IIPQDPTLFDGTVRGNLDPL----VQ-YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLK 1415 (1513)
Q Consensus 1341 iVpQdp~LF~gTIR~NLdp~----~~-~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr 1415 (1513)
++||+|.+|+.|+++|+... .. ..++++.++++..++.+. .......+||+|||||++|||||++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDT----------ILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChH----------HhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999631 11 123456677777777431 1233456899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhcCEEEEEe-CCEEeEecChh
Q 000432 1416 KSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVIDSDLVLVLS-DGRIAEYDSPT 1481 (1513)
Q Consensus 1416 ~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVLd-~G~IvE~Gtp~ 1481 (1513)
+|+++||||||++||+.+.+.+.+.|++..+ ++|+|+|+|+++.+..||+|++|+ ++..++.|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999988653 789999999999998999999995 66777888885
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=355.39 Aligned_cols=203 Identities=30% Similarity=0.393 Sum_probs=175.7
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHH---hhhc
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHD---LRSR 1338 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~---LR~~ 1338 (1513)
|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++.+. +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 35999999999999999999999999999999999999999999999999998876544 6889
Q ss_pred eEEEcCCCcc-ccCcHhhccCCC---CCCCH----HHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHH
Q 000432 1339 LGIIPQDPTL-FDGTVRGNLDPL---VQYSD----KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLG 1410 (1513)
Q Consensus 1339 isiVpQdp~L-F~gTIR~NLdp~---~~~sd----eei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LA 1410 (1513)
++|+||+|.+ +..|+++|+... ...++ +++.++++..++.+...+ ...+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN-----------FPIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CchhCCHHHHHHHHHH
Confidence 9999999987 467999999642 12233 245677888877665433 2357999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeE
Q 000432 1411 RTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAE 1476 (1513)
Q Consensus 1411 RALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE 1476 (1513)
||++++|++|+|||||++||+++.+.+.+.|++.. +++|+|+|+|+++.+.. ||+|++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999998764 47899999999999987 89999999999864
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=374.58 Aligned_cols=228 Identities=21% Similarity=0.353 Sum_probs=189.9
Q ss_pred eEEEEEEEEEEcC--CCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC----CCCcEEEEcCeeCCCCChHH
Q 000432 1261 TISFHNLQIRYAE--HLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE----PTMGSIIIDNVDITKIGLHD 1334 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~--~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e----p~~G~I~IDGvdI~~i~l~~ 1334 (1513)
-|+++|++++|+. +...+|+||||+|++||.+||||+||||||||+++|.|+.+ |++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4899999999953 22359999999999999999999999999999999999986 58999999999999988776
Q ss_pred hh----hceEEEcCCCcc--c-cCcHhhccCC-C------CC------CCHHHHHHHHHHcCCcHHHHhhhccccchhcc
Q 000432 1335 LR----SRLGIIPQDPTL--F-DGTVRGNLDP-L------VQ------YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAE 1394 (1513)
Q Consensus 1335 LR----~~isiVpQdp~L--F-~gTIR~NLdp-~------~~------~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e 1394 (1513)
++ ++|++|||+|.. + .-||.+|+.. . +. ..++++.++|+.+++.+.-. -+ ..
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~----~~----~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD----AM----RS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH----HH----hC
Confidence 54 479999999963 3 3488888741 0 10 11346788999999874311 11 22
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeC
Q 000432 1395 NGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSD 1471 (1513)
Q Consensus 1395 ~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~ 1471 (1513)
....||||||||++|||||+.+|+|||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 2357999999999999999999999999999999999999999999998653 7899999999999976 999999999
Q ss_pred CEEeEecChhHHHhcCChHHHH-HHH
Q 000432 1472 GRIAEYDSPTKLLEREDSFFSQ-LIK 1496 (1513)
Q Consensus 1472 G~IvE~Gtp~eLl~~~~~~f~~-l~~ 1496 (1513)
|+|+|.|+++++.+++...|.+ +.+
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~~ll~ 260 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQALIR 260 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 9999999999998876556654 444
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=361.62 Aligned_cols=223 Identities=27% Similarity=0.401 Sum_probs=197.0
Q ss_pred cceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe------------
Q 000432 629 EFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------ 696 (1513)
Q Consensus 629 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------------ 696 (1513)
...|+++|++++|+.. ..++|+|+||+|++|++++|+|+||||||||+++|+|+++|.+|+|.++|.
T Consensus 17 ~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 17 GGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 4579999999999642 357999999999999999999999999999999999999999999999872
Q ss_pred -EEEEcCCCcccCccHHHHHccCCCCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000432 697 -KAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDA 775 (1513)
Q Consensus 697 -~ayv~Q~~~l~~~ti~eNI~fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~ 775 (1513)
++||+|+|+++++|++||+........+++.+.++..++.+.++.+|.|.+|.+++.+.+||||||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 6999999999999999999866444445566777778888889999999999999999999999999999999999999
Q ss_pred CEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhcC-ccHHHHH
Q 000432 776 DIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN-IGFEVLV 853 (1513)
Q Consensus 776 ~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~~-~~~~~l~ 853 (1513)
+++||||||++||+++.+.++ +.+..+.+++|+|++||+++.+..||+|++|++|++++.|+++++.+.. +.|.+++
T Consensus 176 ~llllDEPt~gLD~~~~~~l~-~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 176 SILIMDEATASIDMATENILQ-KVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHH-HHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 999999999999999876665 5666655689999999999998889999999999999999999997653 3455544
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=373.13 Aligned_cols=212 Identities=24% Similarity=0.372 Sum_probs=183.3
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 5899999999974 3599999999999999999999999999999999999999999999999998764 356789999
Q ss_pred EEcCCCcccc-CcHhhccCCC---CCCCHH----HHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHH
Q 000432 1341 IIPQDPTLFD-GTVRGNLDPL---VQYSDK----QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRT 1412 (1513)
Q Consensus 1341 iVpQdp~LF~-gTIR~NLdp~---~~~sde----ei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARA 1412 (1513)
|+||++.+|. .|+++|+... ...+++ ++.++++.+++.+. +++.+ .+||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-------~~~~~----~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-------ADVRV----ALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-------hcCch----hhCCHHHHHHHHHHHH
Confidence 9999999885 6999999632 123332 34456666666433 34443 4699999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhc
Q 000432 1413 LLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1413 LLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
|+++|++|+|||||++||+++...+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998864 47899999999999976 999999999999999999999764
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=364.42 Aligned_cols=211 Identities=24% Similarity=0.344 Sum_probs=185.8
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
++++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 789999999964 359999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EcCCCc-cccCcHhhccCCCC----C-------CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHH
Q 000432 1342 IPQDPT-LFDGTVRGNLDPLV----Q-------YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCL 1409 (1513)
Q Consensus 1342 VpQdp~-LF~gTIR~NLdp~~----~-------~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~L 1409 (1513)
+||++. .+..|+++|+.... . ..++++.++++.+++.+...+ ....||||||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHH
Confidence 999995 45689999996421 0 123457788888887554322 345799999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHh
Q 000432 1410 GRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1410 ARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~ 1485 (1513)
|||++.+|++++|||||++||+++...+.+.|++.. +++|+|+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999999998764 37899999999999955 99999999999999999999865
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=357.06 Aligned_cols=207 Identities=27% Similarity=0.390 Sum_probs=173.7
Q ss_pred EEEEEEEEEEcCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCh---HHhh
Q 000432 1262 ISFHNLQIRYAEHL--PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGL---HDLR 1336 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~--~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l---~~LR 1336 (1513)
|+++||+++|+... +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 259999999999999999999999999999999999999999999999999988774 5788
Q ss_pred hceEEEcCCC--ccc-cCcHhhccCC----CC-CCCHHHH----HHHHHHcCCcHHHHhhhccccchhccCCCCCChhHH
Q 000432 1337 SRLGIIPQDP--TLF-DGTVRGNLDP----LV-QYSDKQV----WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQR 1404 (1513)
Q Consensus 1337 ~~isiVpQdp--~LF-~gTIR~NLdp----~~-~~sdeei----~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQR 1404 (1513)
++++|+||+| .++ ..|+++|+.. .. ...+++. .++++..++.+ ........+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 9999999999 344 5799999852 11 1112211 24555555531 123344568999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEec
Q 000432 1405 QLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYD 1478 (1513)
Q Consensus 1405 Qrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~G 1478 (1513)
||++||||++++|+||+|||||++||+++...+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999988754 7899999999999884 9999999999998865
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=361.56 Aligned_cols=225 Identities=26% Similarity=0.409 Sum_probs=190.9
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcC------eeCCCCChH
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN------VDITKIGLH 1333 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDG------vdI~~i~l~ 1333 (1513)
..|+++|++++|+. +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+|| .|+.+++..
T Consensus 9 ~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 9 DVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 35999999999964 3599999999999999999999999999999999999999996666554 777777888
Q ss_pred HhhhceEEEcCCCccccC-cHhhccCCC----CCCCH----HHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHH
Q 000432 1334 DLRSRLGIIPQDPTLFDG-TVRGNLDPL----VQYSD----KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQR 1404 (1513)
Q Consensus 1334 ~LR~~isiVpQdp~LF~g-TIR~NLdp~----~~~sd----eei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQR 1404 (1513)
.+|++++|+||+|.+|.+ |+++|+... +...+ +.+.++++..++.+.+.. .....+..||+|||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD-------RLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchh-------hhcCCcccCCHHHH
Confidence 899999999999999976 999999732 11122 235677787887654311 12335667999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHH
Q 000432 1405 QLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKL 1483 (1513)
Q Consensus 1405 Qrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eL 1483 (1513)
||++||||++++|++|+|||||++||..+...+.+.|++..+++|+|+++|+++.+.. ||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999987778999999999999955 999999999999999999999
Q ss_pred HhcCChHHHH
Q 000432 1484 LEREDSFFSQ 1493 (1513)
Q Consensus 1484 l~~~~~~f~~ 1493 (1513)
.+++...|.+
T Consensus 240 ~~~~~~~~~~ 249 (257)
T PRK14246 240 FTSPKNELTE 249 (257)
T ss_pred HhCCCcHHHH
Confidence 8775544443
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=359.26 Aligned_cols=213 Identities=27% Similarity=0.442 Sum_probs=182.3
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHH-hhhce
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHD-LRSRL 1339 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~-LR~~i 1339 (1513)
.|+++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 4889999999964 35999999999999999999999999999999999999999999999999998877654 57889
Q ss_pred EEEcCCCccccC-cHhhccCCCC----CCCH----HHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHH
Q 000432 1340 GIIPQDPTLFDG-TVRGNLDPLV----QYSD----KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLG 1410 (1513)
Q Consensus 1340 siVpQdp~LF~g-TIR~NLdp~~----~~sd----eei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LA 1410 (1513)
+++||++.+|.+ |+++|+.... ..+. +.+.+.++..++. .........||||||||++||
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-----------HLRDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH-----------HHhhcchhhCCHHHHHHHHHH
Confidence 999999999875 9999997431 1222 2344455555443 333444568999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhc
Q 000432 1411 RTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1411 RALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
||++++|++|+|||||++||+.+...+.+.+++.. +++|+|+++|+++.+.+ ||+|++|++|++++.|+++++++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999999999888754 47899999999987765 999999999999999999998764
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=336.00 Aligned_cols=205 Identities=23% Similarity=0.402 Sum_probs=176.4
Q ss_pred ceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCC-----cEEEECCe--------
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMA-----GTVKISGT-------- 696 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~-----G~i~~~g~-------- 696 (1513)
..++++|+++.|.. +.+|+|||++|++++++|++|||||||||||+++.+..+..+ |+|.++|.
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 46899999999973 579999999999999999999999999999999999988765 89999884
Q ss_pred -------EEEEcCCCcccCccHHHHHccCCCCC---ch----HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHH
Q 000432 697 -------KAYVPQSPWILTGNIRENILFGNQYD---SC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQK 762 (1513)
Q Consensus 697 -------~ayv~Q~~~l~~~ti~eNI~fg~~~~---~~----~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQk 762 (1513)
+|+|+|.|--|..||.|||.||.... ++ ..++.++.++|.+.... .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 49999999999999999999995421 12 24445555666554432 23456788999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000432 763 QRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEE 841 (1513)
Q Consensus 763 qRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~ 841 (1513)
||++||||+.-+|+|+|||||||||||-+..+| ++.+..+.++-|+|+|||.++...+ +|+...+.+|+++|.|+.++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 999999999999999999999999999998777 7788888888999999999988665 89999999999999999988
Q ss_pred HHhc
Q 000432 842 LLKQ 845 (1513)
Q Consensus 842 l~~~ 845 (1513)
+..+
T Consensus 235 iF~~ 238 (253)
T COG1117 235 IFTN 238 (253)
T ss_pred hhcC
Confidence 8754
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=353.69 Aligned_cols=201 Identities=25% Similarity=0.415 Sum_probs=177.1
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
++++||+++|+. +++|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.|+.+.+ .+|+++++
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999963 568999999999999999999999999999999999999999999999997643 46889999
Q ss_pred EcCCCccccC-cHhhccCC-CC-C-----CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1342 IPQDPTLFDG-TVRGNLDP-LV-Q-----YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1342 VpQdp~LF~g-TIR~NLdp-~~-~-----~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
+||+|.+|.+ |+++|+.. .. . .+++++.++++..++.+...+.| .+||+|||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999975 99999963 11 1 13456788999999877665554 36999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecC
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDS 1479 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gt 1479 (1513)
+++|+|++|||||+++|.++...+.+.|++..+ ++|+|+|+|+++.+.+ ||+|++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999988653 7899999999999876 99999999999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=361.46 Aligned_cols=221 Identities=20% Similarity=0.349 Sum_probs=183.6
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCee-----CCCCChHHh
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVD-----ITKIGLHDL 1335 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvd-----I~~i~l~~L 1335 (1513)
.|+++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.+ +.+.+...+
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 5999999999964 359999999999999999999999999999999999999999999999999 887766553
Q ss_pred ----hhceEEEcCCCc--ccc-CcHhhccCC----CCCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCC
Q 000432 1336 ----RSRLGIIPQDPT--LFD-GTVRGNLDP----LVQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWS 1400 (1513)
Q Consensus 1336 ----R~~isiVpQdp~--LF~-gTIR~NLdp----~~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLS 1400 (1513)
|+.++|+||+|. ++. .|+++|+.. ..... ++++.++++..++.+ +.....+.+||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS 153 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTFS 153 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccCC
Confidence 567999999984 343 478888742 11111 233445555555431 23445667899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEe
Q 000432 1401 VGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEY 1477 (1513)
Q Consensus 1401 gGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~ 1477 (1513)
||||||++||||++++|+||+|||||++||+++.+.+.+.|++..+ +.|+|+|+|+++.+.+ ||+|++|++|++++.
T Consensus 154 ~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999987643 7899999999999985 999999999999999
Q ss_pred cChhHHHhcCChHHHH
Q 000432 1478 DSPTKLLEREDSFFSQ 1493 (1513)
Q Consensus 1478 Gtp~eLl~~~~~~f~~ 1493 (1513)
|+++++..++...|.+
T Consensus 234 ~~~~~~~~~~~~~~~~ 249 (258)
T PRK11701 234 GLTDQVLDDPQHPYTQ 249 (258)
T ss_pred CCHHHHhcCCCCHHHH
Confidence 9999998765444543
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=355.42 Aligned_cols=200 Identities=31% Similarity=0.476 Sum_probs=172.7
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCC--CChHHhhhce
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITK--IGLHDLRSRL 1339 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~--i~l~~LR~~i 1339 (1513)
|+++||+++|+. .++|+|+||++++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. .+...+|+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 578999999965 359999999999999999999999999999999999999999999999999853 4556788999
Q ss_pred EEEcCCCcccc-CcHhhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHH
Q 000432 1340 GIIPQDPTLFD-GTVRGNLDPL----VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLG 1410 (1513)
Q Consensus 1340 siVpQdp~LF~-gTIR~NLdp~----~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LA 1410 (1513)
+|+||+|.+|. .|+++|+... ...+ ++++.++++..++.+...+ ...+||||||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA-----------YPAQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhh-----------CccccCHHHHHHHHHH
Confidence 99999999986 6999999642 1222 2345667777776554333 2357999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEE
Q 000432 1411 RTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRI 1474 (1513)
Q Consensus 1411 RALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~I 1474 (1513)
||++++|++|||||||++||+++.+.+.+.|++.. .++|+|+++|+++.+.+ ||+|++|++|++
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998764 47899999999999976 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=359.37 Aligned_cols=223 Identities=22% Similarity=0.317 Sum_probs=187.1
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC----CCcEEEEcCeeCCCCChHHhh
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP----TMGSIIIDNVDITKIGLHDLR 1336 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep----~~G~I~IDGvdI~~i~l~~LR 1336 (1513)
.|+++|++++| + .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.+++.. +..+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 58999999999 2 3599999999999999999999999999999999999999 999999999998632 2234
Q ss_pred hceEEEcCCCc-ccc--CcHhhccCC----C-CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHH
Q 000432 1337 SRLGIIPQDPT-LFD--GTVRGNLDP----L-VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFC 1408 (1513)
Q Consensus 1337 ~~isiVpQdp~-LF~--gTIR~NLdp----~-~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~ 1408 (1513)
++++|+||+|. .|. .|+.+|+.. . ....+++++++++.+++.+. ++.+......||||||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHH
Confidence 67999999985 443 477777531 1 12345678999999988653 12334456789999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHh
Q 000432 1409 LGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1409 LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~ 1485 (1513)
|||||+++|+||||||||++||..+.+.+.+.|++..+ ++|||+++|+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999988653 7899999999999875 99999999999999999999987
Q ss_pred cCCh-HHHHHHH
Q 000432 1486 REDS-FFSQLIK 1496 (1513)
Q Consensus 1486 ~~~~-~f~~l~~ 1496 (1513)
++.. .++.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (254)
T PRK10418 231 APKHAVTRSLVS 242 (254)
T ss_pred CCCCHHHHHHHH
Confidence 6544 4444543
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=374.31 Aligned_cols=212 Identities=26% Similarity=0.411 Sum_probs=184.7
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++||+++|++. .+|+||||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.|+.+.+ ...|++++
T Consensus 41 ~i~i~nl~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 59999999999743 5999999999999999999999999999999999999999999999999998654 56889999
Q ss_pred EEcCCCccc-cCcHhhccCCCC---CCCH----HHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHH
Q 000432 1341 IIPQDPTLF-DGTVRGNLDPLV---QYSD----KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRT 1412 (1513)
Q Consensus 1341 iVpQdp~LF-~gTIR~NLdp~~---~~sd----eei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARA 1412 (1513)
|+||++.+| ..|+++|+..+. ..+. +.+.++++.+++.+ ..++.+ .+||+|||||++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-------~~~~~~----~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------KADARV----SDLSGGMKRRLTLARA 186 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------hhCCCh----hhCCHHHHHHHHHHHH
Confidence 999999987 569999996421 1222 23455666666644 344444 4699999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhc
Q 000432 1413 LLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1413 LLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
|+.+|++|||||||++||+.+...+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998864 47999999999999976 999999999999999999999764
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=337.40 Aligned_cols=204 Identities=30% Similarity=0.459 Sum_probs=176.7
Q ss_pred cceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe------------
Q 000432 629 EFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------ 696 (1513)
Q Consensus 629 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------------ 696 (1513)
...|++++++++|. ++.+++|+||+|++||.++|+|+|||||||||++|+|+.+|++|+|.++|.
T Consensus 6 ~~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 45799999999996 468999999999999999999999999999999999999999999999983
Q ss_pred ----EEEEcCCCcccCc-cHHHHHccCC----CCCchHHHH----HHHHHhcHHH-HhhccCCCCccccCCCCCCChHHH
Q 000432 697 ----KAYVPQSPWILTG-NIRENILFGN----QYDSCKYDR----TVEACALVKD-FELFASGDLTEIGERGINMSGGQK 762 (1513)
Q Consensus 697 ----~ayv~Q~~~l~~~-ti~eNI~fg~----~~~~~~~~~----v~~~~~l~~d-~~~l~~Gd~T~Ige~g~~LSGGQk 762 (1513)
+|+++|+.-||+. ||+||+.|.. ..+++.+++ -+++++|..+ .+.+| ..||||++
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHH
Confidence 5999999999976 9999999952 344444443 3466677666 55555 57999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCCCcccc-CCEEEEEeCCeEEEecCh
Q 000432 763 QRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRF 839 (1513)
Q Consensus 763 qRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~--~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~ 839 (1513)
.|++||||+..||+|+++|||||+|||.++. .|.++|+.+.+ +-|+|+|||+++.+.. ||+|+++.||+|+..|++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~-~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAG-VIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHH-HHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 9999999999999999999999999999855 55778876543 7899999999988655 899999999999999999
Q ss_pred HHHHhcCc
Q 000432 840 EELLKQNI 847 (1513)
Q Consensus 840 ~~l~~~~~ 847 (1513)
+|+.+.+.
T Consensus 231 ~el~~sd~ 238 (263)
T COG1127 231 EELLASDD 238 (263)
T ss_pred HHHHhCCC
Confidence 99988654
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=352.73 Aligned_cols=200 Identities=32% Similarity=0.523 Sum_probs=168.2
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC-------------eE
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG-------------TK 697 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g-------------~~ 697 (1513)
.++++|++|+|+ ++++|+|+||++++|++++|+|||||||||||++|.|.++|.+|+|.++| .+
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 378999999997 36899999999999999999999999999999999999999999999999 46
Q ss_pred EEEcCCCcc-cCccHHHHHccCCC-----C---Cch---HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHH
Q 000432 698 AYVPQSPWI-LTGNIRENILFGNQ-----Y---DSC---KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRI 765 (1513)
Q Consensus 698 ayv~Q~~~l-~~~ti~eNI~fg~~-----~---~~~---~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi 765 (1513)
|||||++.. +.-||+|-+.+|+. + .++ ..+++++.+++.+..+ ..-..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~-----------r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD-----------RPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc-----------CcccccChhHHHHH
Confidence 999999754 45699999999962 1 122 2334455555443221 12346999999999
Q ss_pred HHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCc-cccCCEEEEEeCCeEEEecChHHH
Q 000432 766 QIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEF-LPAADIILVMENGRIAQAGRFEEL 842 (1513)
Q Consensus 766 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~-l~~~d~i~vl~~G~i~~~g~~~~l 842 (1513)
.|||||.++|+|+|||||||+||....-++++ .++.+. +|+|+|+|+|+++. +..||++++|++|+++.+|+++|.
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~-ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLE-LLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchh
Confidence 99999999999999999999999999988886 454443 48999999999988 567999999999999999999998
Q ss_pred Hhc
Q 000432 843 LKQ 845 (1513)
Q Consensus 843 ~~~ 845 (1513)
+..
T Consensus 227 lT~ 229 (258)
T COG1120 227 LTE 229 (258)
T ss_pred cCH
Confidence 754
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=369.38 Aligned_cols=211 Identities=24% Similarity=0.367 Sum_probs=187.1
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
++++|++++|++ ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+ ....+|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999964 359999999999999999999999999999999999999999999999999987 44678999999
Q ss_pred EcCCCccccC-cHhhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1342 IPQDPTLFDG-TVRGNLDPLV---QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1342 VpQdp~LF~g-TIR~NLdp~~---~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
+||+|.+|.+ |++|||.... ..+ .+++.++++..++.+... ....+||+|||||++|||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH-----------KKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CchhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999996321 122 345677777777765432 23457999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhc
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
+++|++|+|||||++||+++.+.+.+.|++..+++|+|+++|+++.+.. ||||++|++|++++.|+++++.++
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999988778999999999999887 999999999999999999998764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=356.48 Aligned_cols=219 Identities=30% Similarity=0.508 Sum_probs=190.7
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC-------------eEE
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG-------------TKA 698 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g-------------~~a 698 (1513)
++++|+++.|+.....++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4688999999643335799999999999999999999999999999999999999999999988 279
Q ss_pred EEcCCCcccCccHHHHHccCCCC-CchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000432 699 YVPQSPWILTGNIRENILFGNQY-DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADI 777 (1513)
Q Consensus 699 yv~Q~~~l~~~ti~eNI~fg~~~-~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~i 777 (1513)
|++|++++++.|++||+.++... ..++..+.++.+++.+.++.+|.|.++..+....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987543 33445556666777777888999999999999999999999999999999999999
Q ss_pred EEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhcCccHHH
Q 000432 778 YLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEV 851 (1513)
Q Consensus 778 llLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 851 (1513)
+||||||++||+++.+.+.+ .+..+.+++|+|++||+++.++.||+|++|++|++++.|+.+++.+.......
T Consensus 161 lllDEP~~gLD~~~~~~l~~-~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 233 (238)
T cd03249 161 LLLDEATSALDAESEKLVQE-ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAK 233 (238)
T ss_pred EEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHH
Confidence 99999999999999877764 56555578999999999999888999999999999999999888765544433
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=352.95 Aligned_cols=200 Identities=25% Similarity=0.442 Sum_probs=173.0
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. ..|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 578999999964 359999999999999999999999999999999999999999999999998753 56789999
Q ss_pred EcCCCccccC-cHhhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1342 IPQDPTLFDG-TVRGNLDPLV---QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1342 VpQdp~LF~g-TIR~NLdp~~---~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
+||++.+|.+ |+++|+.... ..+ ++++.++++..++.+... ....+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-----------KRVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-----------CcHhhCCHHHHHHHHHHHHH
Confidence 9999999975 9999985321 111 345666777777654432 23457999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEec
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYD 1478 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~G 1478 (1513)
+++|++|+|||||++||+++.+.+.+.|++.. +++|+|+|+|+++.+.. ||+|++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998764 47899999999999876 9999999999999865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=354.96 Aligned_cols=217 Identities=32% Similarity=0.508 Sum_probs=191.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------EE
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------KA 698 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------~a 698 (1513)
|+++|++++|+.. ..++++|+||++++|++++|+|+||||||||+++|.|+++|++|+|.++|. ++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999642 247999999999999999999999999999999999999999999999872 69
Q ss_pred EEcCCCcccCccHHHHHccCCC-CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000432 699 YVPQSPWILTGNIRENILFGNQ-YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADI 777 (1513)
Q Consensus 699 yv~Q~~~l~~~ti~eNI~fg~~-~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~i 777 (1513)
|++|++++++.|++||+.++.+ ...+.+.+..+.+.+.+.++.+|.|.++..+.+..+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998754 334455666677778888899999999999999999999999999999999999999
Q ss_pred EEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhcCccHH
Q 000432 778 YLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFE 850 (1513)
Q Consensus 778 llLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~ 850 (1513)
+||||||++||+.+.+.+. +.+..+.+++|+|++||+++.++.||+|++|++|++++.|+.+++.+..+.|.
T Consensus 160 llLDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~ 231 (234)
T cd03251 160 LILDEATSALDTESERLVQ-AALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYA 231 (234)
T ss_pred EEEeCccccCCHHHHHHHH-HHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchh
Confidence 9999999999999977775 56766667899999999999988899999999999999999999876654443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=354.03 Aligned_cols=212 Identities=30% Similarity=0.504 Sum_probs=189.7
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC-------------eE
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG-------------TK 697 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g-------------~~ 697 (1513)
.++++|++++|+. .+++++|+||++++|++++|+||||||||||+++|+|+.+|.+|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 4889999999963 24699999999999999999999999999999999999999999999987 26
Q ss_pred EEEcCCCcccCccHHHHHccCCCC-CchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000432 698 AYVPQSPWILTGNIRENILFGNQY-DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDAD 776 (1513)
Q Consensus 698 ayv~Q~~~l~~~ti~eNI~fg~~~-~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~ 776 (1513)
+|++|+++++.+|++||+.++.+. ..++..+.++.+++.+.++.+|.|.++..+....+|||||||||+||||++++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999987643 3345566677778888889999999999999999999999999999999999999
Q ss_pred EEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000432 777 IYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 777 illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
++||||||++||+.+.+.+. +.+..+.+++|+|++||+++.++.||+|++|++|++++.|+.+++.++
T Consensus 160 llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQ-EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHH-HHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999987775 456666568999999999999888999999999999999998887654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=355.21 Aligned_cols=218 Identities=32% Similarity=0.542 Sum_probs=191.7
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------EE
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------KA 698 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------~a 698 (1513)
++++|++++|+. .+++|+|+||+|++|++++|+|+||||||||+++|+|+.+|++|+|.++|. ++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 468899999963 246999999999999999999999999999999999999999999999883 69
Q ss_pred EEcCCCcccCccHHHHHccCCCC-CchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000432 699 YVPQSPWILTGNIRENILFGNQY-DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADI 777 (1513)
Q Consensus 699 yv~Q~~~l~~~ti~eNI~fg~~~-~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~i 777 (1513)
|++|++++++.|++||+.++.+. ..+...+.++.+.+.+.++.+|.|.+|.+..+..+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987542 33344566677788888899999999999999999999999999999999999999
Q ss_pred EEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhcCccHHHH
Q 000432 778 YLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVL 852 (1513)
Q Consensus 778 llLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~l 852 (1513)
+||||||++||+++.+.+.+ .+..+.+++|+|++||+++.+..||++++|++|++++.|+.+++.+....+...
T Consensus 159 lllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~ 232 (236)
T cd03253 159 LLLDEATSALDTHTEREIQA-ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232 (236)
T ss_pred EEEeCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHH
Confidence 99999999999999877764 565555589999999999998889999999999999999999887765554443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=359.60 Aligned_cols=212 Identities=23% Similarity=0.278 Sum_probs=178.6
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccC--CCCCcEEEEcCeeCCCCChHHh-hhc
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIV--EPTMGSIIIDNVDITKIGLHDL-RSR 1338 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~--ep~~G~I~IDGvdI~~i~l~~L-R~~ 1338 (1513)
|+++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+. +|++|+|.+||.++..++.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 578999999964 35999999999999999999999999999999999994 7999999999999998887664 456
Q ss_pred eEEEcCCCccccC-cHhhccCCC----CC------CC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhH
Q 000432 1339 LGIIPQDPTLFDG-TVRGNLDPL----VQ------YS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQ 1403 (1513)
Q Consensus 1339 isiVpQdp~LF~g-TIR~NLdp~----~~------~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQ 1403 (1513)
++++||+|.+|.+ |+++|+... .. .+ ++++.++++..++.+.. .+..+. ..|||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G~ 149 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGGE 149 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHHH
Confidence 9999999999986 899998521 10 11 23466677777764311 122221 2599999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh--cCEEEEEeCCEEeEecCh
Q 000432 1404 RQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID--SDLVLVLSDGRIAEYDSP 1480 (1513)
Q Consensus 1404 RQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~--~DrIlVLd~G~IvE~Gtp 1480 (1513)
|||++|||||+++|++|+|||||++||.++.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|++
T Consensus 150 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (243)
T TIGR01978 150 KKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV 229 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCH
Confidence 999999999999999999999999999999999999998865 47899999999999987 799999999999999999
Q ss_pred hHHH
Q 000432 1481 TKLL 1484 (1513)
Q Consensus 1481 ~eLl 1484 (1513)
++..
T Consensus 230 ~~~~ 233 (243)
T TIGR01978 230 ELAK 233 (243)
T ss_pred HHhc
Confidence 8654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=374.52 Aligned_cols=211 Identities=23% Similarity=0.404 Sum_probs=186.3
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCC----ChHHhhh
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKI----GLHDLRS 1337 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i----~l~~LR~ 1337 (1513)
|++ |++++|+.. .+ |+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+. .....|+
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 567 999999642 23 99999999999999999999999999999999999999999999998753 2456788
Q ss_pred ceEEEcCCCcccc-CcHhhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHcc
Q 000432 1338 RLGIIPQDPTLFD-GTVRGNLDPL-VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLK 1415 (1513)
Q Consensus 1338 ~isiVpQdp~LF~-gTIR~NLdp~-~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr 1415 (1513)
+++|+||++.+|. .|+++|+.+. ....++++.++++..++.+...+.| .+||||||||++|||||++
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHHc
Confidence 9999999999996 5999999753 2345677889999998876655443 5799999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcCC
Q 000432 1416 KSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERED 1488 (1513)
Q Consensus 1416 ~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~~ 1488 (1513)
+|++|+|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++.
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 9999999999999999999999999988754 6899999999998876 99999999999999999999998865
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=370.21 Aligned_cols=203 Identities=24% Similarity=0.406 Sum_probs=177.1
Q ss_pred EEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEcCCCccc
Q 000432 1270 RYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLF 1349 (1513)
Q Consensus 1270 ~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~LF 1349 (1513)
+|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|++++++||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 4643 359999999999999999999999999999999999999999999999999976 4467789999999999999
Q ss_pred cC-cHhhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000432 1350 DG-TVRGNLDPLV---QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILV 1421 (1513)
Q Consensus 1350 ~g-TIR~NLdp~~---~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILi 1421 (1513)
.+ |+++||.... ..+ ++++.++++.+++.+.. +.. ..+||||||||++|||||+++|++|+
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-------DRP----VGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------CCc----hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 76 9999996421 122 34577888888876543 223 35799999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhc
Q 000432 1422 LDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1422 LDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
|||||++||+++.+.+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999998864 47899999999999976 999999999999999999998764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=360.99 Aligned_cols=212 Identities=22% Similarity=0.329 Sum_probs=185.4
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCC--------CcEEEEcCeeCCCCChH
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPT--------MGSIIIDNVDITKIGLH 1333 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~--------~G~I~IDGvdI~~i~l~ 1333 (1513)
|+++|++++|+.. ++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++...+..
T Consensus 2 l~~~nl~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRHR--AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECCE--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 7899999999643 5999999999999999999999999999999999999998 99999999999988888
Q ss_pred HhhhceEEEcCCCc-cccCcHhhccCCCC--------CC---CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCCh
Q 000432 1334 DLRSRLGIIPQDPT-LFDGTVRGNLDPLV--------QY---SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSV 1401 (1513)
Q Consensus 1334 ~LR~~isiVpQdp~-LF~gTIR~NLdp~~--------~~---sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSg 1401 (1513)
.+|+.++++||++. +|..|+++|+.... .. .++.++++++..++.+. .......|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATAL-----------VGRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCH
Confidence 88999999999986 67889999996421 01 12356777777776543 3344568999
Q ss_pred hHHHHHHHHHHHc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEE
Q 000432 1402 GQRQLFCLGRTLL---------KKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVL 1469 (1513)
Q Consensus 1402 GQRQrl~LARALL---------r~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVL 1469 (1513)
|||||++|||||+ .+|++|||||||++||+++.+.+.+.|++..+ ++|+|+|+|+++.+.+ ||+|++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 59999999999999999999999999988653 6899999999999975 9999999
Q ss_pred eCCEEeEecChhHHHhc
Q 000432 1470 SDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1470 d~G~IvE~Gtp~eLl~~ 1486 (1513)
++|++++.|+++++++.
T Consensus 229 ~~G~i~~~g~~~~~~~~ 245 (272)
T PRK13547 229 ADGAIVAHGAPADVLTP 245 (272)
T ss_pred ECCeEEEecCHHHHcCH
Confidence 99999999999998753
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=347.64 Aligned_cols=216 Identities=27% Similarity=0.415 Sum_probs=191.1
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCe---eCCCCChHHhhh
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNV---DITKIGLHDLRS 1337 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGv---dI~~i~l~~LR~ 1337 (1513)
.|+++|++..|+.- .+++|||++|+.||.+|+.||||||||||++++.|+..|++|+|.+||. |.+++..+ .+
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~R 77 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--DR 77 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--hc
Confidence 37788888888643 5899999999999999999999999999999999999999999999999 88774444 46
Q ss_pred ceEEEcCCCccc-cCcHhhccCCCC---------CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHH
Q 000432 1338 RLGIIPQDPTLF-DGTVRGNLDPLV---------QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLF 1407 (1513)
Q Consensus 1338 ~isiVpQdp~LF-~gTIR~NLdp~~---------~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl 1407 (1513)
+||+|.|+.-|| +.||++||.++- .-.+.++.+.|+.|+|..+-+..| ..||||||||+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHH
Confidence 899999999998 569999998643 123456778899999988777766 46899999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1408 CLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1408 ~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
||||||...|++|+||||.++||++-.+.+++-|++.. -++|+++|||+.+.+.. ||||+||++|+|...|+|+|..
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 99999999999999999999999999999999998765 37899999999998766 9999999999999999999999
Q ss_pred hcCChHH
Q 000432 1485 EREDSFF 1491 (1513)
Q Consensus 1485 ~~~~~~f 1491 (1513)
..+++.|
T Consensus 227 ~~P~s~f 233 (345)
T COG1118 227 DHPASRF 233 (345)
T ss_pred cCCCccc
Confidence 9888765
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=363.19 Aligned_cols=201 Identities=30% Similarity=0.442 Sum_probs=173.2
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-----------EEE
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-----------KAY 699 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-----------~ay 699 (1513)
.|+++|++.+|.+. .+++|+||+|++||+++++|||||||||||++|+|+.+|++|+|.++|. +|+
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 58999999999642 2999999999999999999999999999999999999999999999995 599
Q ss_pred EcCCCcccC-ccHHHHHccCCCCC-------chHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000432 700 VPQSPWILT-GNIRENILFGNQYD-------SCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAV 771 (1513)
Q Consensus 700 v~Q~~~l~~-~ti~eNI~fg~~~~-------~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal 771 (1513)
|+|+.-|+. .||+|||.||.... +++.+++.+.+++.+.++..| ..||||||||||||||+
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHHH
Confidence 999999996 59999999997643 345556666667766666544 67999999999999999
Q ss_pred hcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCcc-ccCCEEEEEeCCeEEEecChHHHHhcC
Q 000432 772 YQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFL-PAADIILVMENGRIAQAGRFEELLKQN 846 (1513)
Q Consensus 772 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l-~~~d~i~vl~~G~i~~~g~~~~l~~~~ 846 (1513)
.++|+++|||||+|+||++....+-.+ ++.+. -+.|+|+|||+.... .-||+|+||++|+|.+.|++.|+.++.
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~e-i~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSE-IKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHH-HHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 999999999999999999997766544 44443 268999999998764 569999999999999999999998653
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=349.66 Aligned_cols=206 Identities=31% Similarity=0.490 Sum_probs=186.3
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------E
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------K 697 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------~ 697 (1513)
.++++|++++|+.. ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 48899999999743 357999999999999999999999999999999999999999999999873 6
Q ss_pred EEEcCCCcccCccHHHHHccCCCCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000432 698 AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADI 777 (1513)
Q Consensus 698 ayv~Q~~~l~~~ti~eNI~fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~i 777 (1513)
+|++|++.++++|++|||.+......++..+.++..++.+.+..+|.|++|..++.+.+||||||||++||||++++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987766556666777788888888899999999999999999999999999999999999999
Q ss_pred EEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecC
Q 000432 778 YLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGR 838 (1513)
Q Consensus 778 llLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~ 838 (1513)
+||||||++||+.+.+.+. +.+..+.+++|+|++||+++.++.||++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQ-KTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHH-HHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999977765 56666656799999999999988899999999999998775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=358.75 Aligned_cols=221 Identities=19% Similarity=0.300 Sum_probs=186.6
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCC---CcEEEEcCeeCCCC-----Ch
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPT---MGSIIIDNVDITKI-----GL 1332 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~---~G~I~IDGvdI~~i-----~l 1332 (1513)
.|+++||+++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|+ +|+|.+||.++... ..
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 5899999999964 35999999999999999999999999999999999999986 49999999998754 24
Q ss_pred HHhhhceEEEcCCCcccc-CcHhhccCCCC---------------CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCC
Q 000432 1333 HDLRSRLGIIPQDPTLFD-GTVRGNLDPLV---------------QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENG 1396 (1513)
Q Consensus 1333 ~~LR~~isiVpQdp~LF~-gTIR~NLdp~~---------------~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G 1396 (1513)
..+|++++|+||++.+|. .|+++|+.... +..++++.++++..++.+...+ ..
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------RV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------Cc
Confidence 567889999999999887 49999996321 1123456778888777554332 34
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCE
Q 000432 1397 ENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGR 1473 (1513)
Q Consensus 1397 ~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~ 1473 (1513)
.+||+|||||++||||++.+|++|||||||++||.++.+.+.+.|++.. .++|+|+|+|+++.+.. ||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 5799999999999999999999999999999999999999999999875 37899999999998755 99999999999
Q ss_pred EeEecChhHHHhcCChHHHHHHHH
Q 000432 1474 IAEYDSPTKLLEREDSFFSQLIKE 1497 (1513)
Q Consensus 1474 IvE~Gtp~eLl~~~~~~f~~l~~~ 1497 (1513)
+++.|+++++ . +....+++..
T Consensus 231 i~~~g~~~~~-~--~~~~~~~~~~ 251 (262)
T PRK09984 231 VFYDGSSQQF-D--NERFDHLYRS 251 (262)
T ss_pred EEEeCCHHHh-c--cHHHHHHHhh
Confidence 9999999996 2 2345555544
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=363.53 Aligned_cols=213 Identities=28% Similarity=0.487 Sum_probs=189.9
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++||+.+|+.+ ..+|+||||+|++||.+|++||+|||||||+++|.|+++|++|+|.++|.|...- ....|+++|
T Consensus 4 ~i~~~~l~k~~~~~-~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGGD-KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCCC-CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 47899999999742 3599999999999999999999999999999999999999999999999998765 778999999
Q ss_pred EEcCCCccccC-cHhhccCCCC-------CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHH
Q 000432 1341 IIPQDPTLFDG-TVRGNLDPLV-------QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRT 1412 (1513)
Q Consensus 1341 iVpQdp~LF~g-TIR~NLdp~~-------~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARA 1412 (1513)
|+||+|.+++. |++|||+++. +..++++.+.++..+|.+.- +.. ...||+|||||+.||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~----~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKK----VRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Ccc----hhhcCHHHHHHHHHHHH
Confidence 99999998866 9999997532 12356789999999987621 222 34699999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC-C-cEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhc
Q 000432 1413 LLKKSSILVLDEATASVDSATDGVIQKIISQEFK-D-RTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1413 LLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~-~-~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
|+.+|++|||||||++||+.+...+.+.|++..+ + +||++.+|.++.+.. ||||++|++|+++.+|+++++.+.
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999998875 4 799999999999988 999999999999999999998654
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=351.13 Aligned_cols=202 Identities=25% Similarity=0.349 Sum_probs=176.7
Q ss_pred EEEEEEEEEEcCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChH---Hhh
Q 000432 1262 ISFHNLQIRYAEHL--PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLH---DLR 1336 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~--~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~---~LR 1336 (1513)
++++|++++|+++. ..+|+|+||++++||++||+|++|||||||+++|.|+++|++|+|.+||.++..++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999997532 4699999999999999999999999999999999999999999999999999877654 468
Q ss_pred hceEEEcCCCcccc-CcHhhccCCCC----CCCH----HHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHH
Q 000432 1337 SRLGIIPQDPTLFD-GTVRGNLDPLV----QYSD----KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLF 1407 (1513)
Q Consensus 1337 ~~isiVpQdp~LF~-gTIR~NLdp~~----~~sd----eei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl 1407 (1513)
+.++++||+|.+|. .|+.+|+.+.. ..+. +++.++++++++.+...+.| .+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 89999999999997 69999996421 2222 35677788888876665544 47999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhcCEEEEEeCCEE
Q 000432 1408 CLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVIDSDLVLVLSDGRI 1474 (1513)
Q Consensus 1408 ~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVLd~G~I 1474 (1513)
+||||++++|++|+|||||++||.++.+.+.+.|++..+ ++|+|+|+|+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999988753 7999999999997777999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=355.92 Aligned_cols=201 Identities=24% Similarity=0.321 Sum_probs=174.0
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +.+++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999964 3599999999999999999999999999999999999999999999999998652 346899
Q ss_pred EcCCCcccc-CcHhhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1342 IPQDPTLFD-GTVRGNLDPL---VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1342 VpQdp~LF~-gTIR~NLdp~---~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
+||++.+|. .|+++|+... ...+ ++++.++++..++.+...+ ...+||||||||++|||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999887 5999999642 1122 2456778888887654332 3457999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEe--CCEEeEecCh
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLS--DGRIAEYDSP 1480 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd--~G~IvE~Gtp 1480 (1513)
+++|++|||||||++||+.+...+.+.|++.. .++|+|+|+|+++.+.. ||+|++|+ +|++++.++.
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999998863 37999999999999876 99999998 5999998764
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=346.34 Aligned_cols=201 Identities=31% Similarity=0.474 Sum_probs=170.0
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe--------------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------- 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------- 696 (1513)
.|.++|++..|+. .++++|||++|+.||++|+.|||||||||||++|.|+..|++|+|.++|.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 3677888888863 57999999999999999999999999999999999999999999999996
Q ss_pred EEEEcCCCccc-CccHHHHHccCCCCC---------chHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 000432 697 KAYVPQSPWIL-TGNIRENILFGNQYD---------SCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766 (1513)
Q Consensus 697 ~ayv~Q~~~l~-~~ti~eNI~fg~~~~---------~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~ 766 (1513)
+|||.|+.-+| ..||.|||.||.+.. +.+..+.++.|.|..--+. ....||||||||||
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~r-----------yP~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR-----------YPAQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhc-----------CchhcChHHHHHHH
Confidence 59999999888 579999999997432 2234445556655433232 24689999999999
Q ss_pred HHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCCCc-cccCCEEEEEeCCeEEEecChHHHH
Q 000432 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DKSVLYVTHQVEF-LPAADIILVMENGRIAQAGRFEELL 843 (1513)
Q Consensus 767 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~--~~TvilvtH~~~~-l~~~d~i~vl~~G~i~~~g~~~~l~ 843 (1513)
||||+..+|++|||||||+|||++..+.+ +..+..+.. +.|+++|||+.++ +..||+|++|+||+|.+.|+++|+.
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~l-r~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKEL-RRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHH-HHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 99999999999999999999999997666 566655542 7899999999987 5669999999999999999999997
Q ss_pred hcC
Q 000432 844 KQN 846 (1513)
Q Consensus 844 ~~~ 846 (1513)
...
T Consensus 227 ~~P 229 (345)
T COG1118 227 DHP 229 (345)
T ss_pred cCC
Confidence 653
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=371.25 Aligned_cols=211 Identities=26% Similarity=0.424 Sum_probs=181.6
Q ss_pred EEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC----hHHhhhceEE
Q 000432 1266 NLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG----LHDLRSRLGI 1341 (1513)
Q Consensus 1266 nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~----l~~LR~~isi 1341 (1513)
|++++|++. .+ |+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ....|+++++
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 899999642 25 999999999999999999999999999999999999999999999987542 3457889999
Q ss_pred EcCCCccccC-cHhhccCCC-CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHcc
Q 000432 1342 IPQDPTLFDG-TVRGNLDPL-VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLK 1415 (1513)
Q Consensus 1342 VpQdp~LF~g-TIR~NLdp~-~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr 1415 (1513)
+||++.+|.+ |+++|+.+. .... ++++.++++..++.+...+. ..+||||||||++|||||++
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRL-----------PGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHHHHHHHHc
Confidence 9999999975 999999742 1111 23467788888776554333 35799999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcCChHH
Q 000432 1416 KSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDSFF 1491 (1513)
Q Consensus 1416 ~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f 1491 (1513)
+|++|+|||||++||+.+.+.+.+.|++..+ ++|+|+|+|+++.+.. ||+|++|++|++++.|+++++..++...|
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCccc
Confidence 9999999999999999999999999988653 7899999999999876 99999999999999999999998765444
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=355.90 Aligned_cols=221 Identities=25% Similarity=0.369 Sum_probs=184.2
Q ss_pred eEEEEEEEEEEcCC-------CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChH
Q 000432 1261 TISFHNLQIRYAEH-------LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~-------~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~ 1333 (1513)
.|+++||+++|+++ ..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++..++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38999999999741 24699999999999999999999999999999999999999999999999999887653
Q ss_pred ---HhhhceEEEcCCCc--cc-cCcHhhccCC-C---CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCC
Q 000432 1334 ---DLRSRLGIIPQDPT--LF-DGTVRGNLDP-L---VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENW 1399 (1513)
Q Consensus 1334 ---~LR~~isiVpQdp~--LF-~gTIR~NLdp-~---~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nL 1399 (1513)
.+|++++++||++. ++ ..|+++|+.. . ...+ ++.+.++++..++.. .........|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD----------SVLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCCh----------hHhhCCCccC
Confidence 47889999999983 43 4699999842 1 1111 123555565555431 1234456789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeE
Q 000432 1400 SVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAE 1476 (1513)
Q Consensus 1400 SgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE 1476 (1513)
|+|||||++|||||+++|+||||||||++||.++...+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999987653 7899999999999986 99999999999999
Q ss_pred ecChhHHHhcCChHHH
Q 000432 1477 YDSPTKLLEREDSFFS 1492 (1513)
Q Consensus 1477 ~Gtp~eLl~~~~~~f~ 1492 (1513)
.|+++++... ++.|.
T Consensus 233 ~g~~~~~~~~-~~~~~ 247 (268)
T PRK10419 233 TQPVGDKLTF-SSPAG 247 (268)
T ss_pred eCChhhccCC-CCHHH
Confidence 9999999865 44443
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=347.72 Aligned_cols=204 Identities=28% Similarity=0.438 Sum_probs=179.2
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
++++||+++|+. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.... ++++++
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 578999999974 35999999999999999999999999999999999999999999999999876422 357999
Q ss_pred EcCCCcccc-CcHhhccCCC---CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCC
Q 000432 1342 IPQDPTLFD-GTVRGNLDPL---VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKS 1417 (1513)
Q Consensus 1342 VpQdp~LF~-gTIR~NLdp~---~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~ 1417 (1513)
+||++.+|. .|+++|+... ...+++++.++++..++.+..... ..+||+|||||++||||++++|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKK-----------AKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 999999886 6999999631 234567888999999987654332 3469999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhH
Q 000432 1418 SILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTK 1482 (1513)
Q Consensus 1418 ~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~e 1482 (1513)
++|+|||||++||+++.+.+.+.|++.. +++|+|+++|+++.+.. ||+|++|++|++++.|++.+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999998764 47899999999999865 99999999999999999875
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=333.61 Aligned_cols=171 Identities=44% Similarity=0.746 Sum_probs=162.3
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++|++++|+...+.+++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 57899999997643469999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000432 1342 IPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILV 1421 (1513)
Q Consensus 1342 VpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILi 1421 (1513)
+||+|.+|+.|++||+ ||+|||||++||||++++|++|+
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997 99999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCE
Q 000432 1422 LDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGR 1473 (1513)
Q Consensus 1422 LDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~ 1473 (1513)
|||||++||+++...+.+.|++..+++|+|+++|+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998877899999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=362.57 Aligned_cols=203 Identities=32% Similarity=0.440 Sum_probs=171.8
Q ss_pred ceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-----------EE
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-----------KA 698 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-----------~a 698 (1513)
..++++|++.+|. +.++++|+||+|++||++++.|||||||||+|++|.|+..|++|+|.++|. ++
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4699999999997 368999999999999999999999999999999999999999999999995 49
Q ss_pred EEcCCCcccC-ccHHHHHccCCCC----C-ch---HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHH
Q 000432 699 YVPQSPWILT-GNIRENILFGNQY----D-SC---KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIAR 769 (1513)
Q Consensus 699 yv~Q~~~l~~-~ti~eNI~fg~~~----~-~~---~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lAR 769 (1513)
+|+|+.-||. .||+|||.||... . ++ +..++++..+|.+-- ..+...|||||||||||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~-----------~R~p~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA-----------DRKPHQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhh-----------hhChhhhChHHHHHHHHHH
Confidence 9999999995 6999999999762 1 12 333444444443322 2456789999999999999
Q ss_pred HHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCc-cccCCEEEEEeCCeEEEecChHHHHhcC
Q 000432 770 AVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI-LKDKSVLYVTHQVEF-LPAADIILVMENGRIAQAGRFEELLKQN 846 (1513)
Q Consensus 770 al~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~TvilvtH~~~~-l~~~d~i~vl~~G~i~~~g~~~~l~~~~ 846 (1513)
||..+|+++|||||+||||.+..+++-.+..+-. ..|.|.|+|||+-+. +..+|+|+||++|+|.+.|+++|+....
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 9999999999999999999999888765543222 138999999999876 7789999999999999999999998764
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=394.03 Aligned_cols=231 Identities=23% Similarity=0.317 Sum_probs=158.2
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHh------ccC---CCCCcEEEEcCe------
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIF------RIV---EPTMGSIIIDNV------ 1325 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~------rl~---ep~~G~I~IDGv------ 1325 (1513)
.++++|++. ..|+|+|++|++||.+||+|.+|||||||+.-++ ++. .+..+...++|.
T Consensus 614 ~L~v~~l~~-------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 686 (943)
T PRK00349 614 FLKLKGARE-------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKV 686 (943)
T ss_pred eEEecCCcc-------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCce
Confidence 578888852 2599999999999999999999999999998764 222 123333334443
Q ss_pred ------eCCC---------CC-hHHhhhceEEEc---------CCCcccc-----------CcHhhccCCCCC-------
Q 000432 1326 ------DITK---------IG-LHDLRSRLGIIP---------QDPTLFD-----------GTVRGNLDPLVQ------- 1362 (1513)
Q Consensus 1326 ------dI~~---------i~-l~~LR~~isiVp---------Qdp~LF~-----------gTIR~NLdp~~~------- 1362 (1513)
+|.. .+ .+.+|.-++=.| +.-.+.+ |+++.|+.+..+
T Consensus 687 v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 766 (943)
T PRK00349 687 IDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDV 766 (943)
T ss_pred EEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCcc
Confidence 3221 11 133444443222 2211111 566666543221
Q ss_pred -----------------CCHHH-----HHHHHHHc----CCcHHHHhh-hccccc-hhccCCCCCChhHHHHHHHHHHHc
Q 000432 1363 -----------------YSDKQ-----VWEALDKC----QLGDLVRAK-EEKLDS-TVAENGENWSVGQRQLFCLGRTLL 1414 (1513)
Q Consensus 1363 -----------------~sdee-----i~~aL~~~----~l~~~I~~l-p~gLdt-~V~e~G~nLSgGQRQrl~LARALL 1414 (1513)
.+-.| +.++++-. .+.+..+.+ .-||+. ..+.....||||||||+.|||||+
T Consensus 767 C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~ 846 (943)
T PRK00349 767 CKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELS 846 (943)
T ss_pred ccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHh
Confidence 11111 22222221 010000000 015554 357777899999999999999999
Q ss_pred cCC---CEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhcCEEEEE------eCCEEeEecChhHHH
Q 000432 1415 KKS---SILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVIDSDLVLVL------SDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1415 r~~---~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVL------d~G~IvE~Gtp~eLl 1484 (1513)
++| +++||||||++||.++.+.+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|+++.
T Consensus 847 ~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 847 KRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred cCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 999 9999999999999999999999998764 578999999999999999999999 799999999999999
Q ss_pred hcCChHHHHHHHHH
Q 000432 1485 EREDSFFSQLIKEY 1498 (1513)
Q Consensus 1485 ~~~~~~f~~l~~~~ 1498 (1513)
+++.++-.+.++.+
T Consensus 927 ~~~~s~t~~~l~~~ 940 (943)
T PRK00349 927 KVEASYTGRYLKPV 940 (943)
T ss_pred hCcccHHHHHHHHH
Confidence 88777666665543
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=330.35 Aligned_cols=220 Identities=26% Similarity=0.407 Sum_probs=186.6
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHH-hhhce
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHD-LRSRL 1339 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~-LR~~i 1339 (1513)
-++++||+..|.+. .+|+||||++++||.++++||+|+|||||+++|+|+.+|.+|+|.++|.||...+.|+ .|..|
T Consensus 3 mL~v~~l~~~YG~~--~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccce--eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 37899999999863 5999999999999999999999999999999999999999999999999999999998 58899
Q ss_pred EEEcCCCccccC-cHhhccCCCCC-CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCC
Q 000432 1340 GIIPQDPTLFDG-TVRGNLDPLVQ-YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKS 1417 (1513)
Q Consensus 1340 siVpQdp~LF~g-TIR~NLdp~~~-~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~ 1417 (1513)
++|||...+|.. ||.|||..... ..+++-++. .+ |.+-++---|.......|.+|||||+|.++|||||..+|
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~-e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~P 155 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DL-EEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRP 155 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccc----cH-HHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCC
Confidence 999999999965 99999974311 111111110 01 112222223455556778899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcC
Q 000432 1418 SILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE 1487 (1513)
Q Consensus 1418 ~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~ 1487 (1513)
|+|+|||||.+|-|.--+.|.++|++..+ +-||+.|-++.....+ +||.+||++|+|+..|+.+||.+++
T Consensus 156 klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 156 KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 99999999999999999999999998864 5699999999998776 9999999999999999999999874
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=317.22 Aligned_cols=198 Identities=30% Similarity=0.442 Sum_probs=169.7
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-----------EEEE
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-----------KAYV 700 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-----------~ayv 700 (1513)
+.++++.|+|... . -..+++|++||++||+|||||||||||++|.|+..|.+|+|.++|. ++++
T Consensus 2 l~L~~V~~~y~~~----~-~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHL----P-MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcc----e-EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 4577899999642 1 2578999999999999999999999999999999999999999995 4899
Q ss_pred cCCCcccCc-cHHHHHccCCC-------CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000432 701 PQSPWILTG-NIRENILFGNQ-------YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVY 772 (1513)
Q Consensus 701 ~Q~~~l~~~-ti~eNI~fg~~-------~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~ 772 (1513)
+|+.-+|.- ||++||-+|.. .+.++.+.+....+|....+.+| ..|||||||||||||++.
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHHh
Confidence 999999965 99999999953 24456666777778887778887 369999999999999999
Q ss_pred cCCCEEEeeCcCCCCCHHHHHHHHHHHHhhh--cCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 000432 773 QDADIYLLDDPFSAVDAHTGTQLFKDCLMGI--LKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQN 846 (1513)
Q Consensus 773 ~~~~illLDep~salD~~~~~~i~~~~~~~~--~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 846 (1513)
++.+|+|||||||||||.-..+... .+..+ -++.|+++|||+++-+.. +|+++++++|+|.++|+.+++....
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~-Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLA-LVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHH-HHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 9999999999999999998776654 44433 357899999999998755 9999999999999999999987654
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=345.95 Aligned_cols=232 Identities=23% Similarity=0.386 Sum_probs=188.1
Q ss_pred EEEEEEEEEEcCCC--CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC-C----CCcEEEEcCeeCCCCChHH
Q 000432 1262 ISFHNLQIRYAEHL--PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE-P----TMGSIIIDNVDITKIGLHD 1334 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~--~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e-p----~~G~I~IDGvdI~~i~l~~ 1334 (1513)
++++|++..|..+. -.+++||||++++||.+||||.|||||||+.++++|+++ | .+|+|.+||.|+.+++-+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997543 359999999999999999999999999999999999998 3 6799999999999999886
Q ss_pred hh----hceEEEcCCCcc-cc--CcHhhcc----CCCCCC-C----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCC
Q 000432 1335 LR----SRLGIIPQDPTL-FD--GTVRGNL----DPLVQY-S----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGEN 1398 (1513)
Q Consensus 1335 LR----~~isiVpQdp~L-F~--gTIR~NL----dp~~~~-s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~n 1398 (1513)
+| +.|++|||||.- |+ -||.+-+ .-.... + .++..++|+.+++.+--+ .+..-...
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~--------~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPER--------RLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHH--------HHhhCCcc
Confidence 54 379999999952 22 1333333 111111 1 346778888888875311 11222356
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEe
Q 000432 1399 WSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIA 1475 (1513)
Q Consensus 1399 LSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~Iv 1475 (1513)
||||||||+.||-||+.+|++||-||||+|||..+.++|.+.|++.. .+.|+|+|||++..+.. ||||.||.+|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 89999999999999999999999999999999999999999998766 48999999999999877 9999999999999
Q ss_pred EecChhHHHhcCChHHHH-HHHHHhhc
Q 000432 1476 EYDSPTKLLEREDSFFSQ-LIKEYSMR 1501 (1513)
Q Consensus 1476 E~Gtp~eLl~~~~~~f~~-l~~~~~~~ 1501 (1513)
|.|+.+++.+++.-.|.+ |++..-..
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll~s~P~~ 260 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLLNSLPRL 260 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHHHhCccc
Confidence 999999999988766654 55544333
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=344.50 Aligned_cols=205 Identities=38% Similarity=0.610 Sum_probs=182.2
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------E
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------K 697 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------~ 697 (1513)
.++++|+++.|+.. .+++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 48899999999632 357999999999999999999999999999999999999999999999883 6
Q ss_pred EEEcCCCcccCccHHHHHccCCCC-CchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000432 698 AYVPQSPWILTGNIRENILFGNQY-DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDAD 776 (1513)
Q Consensus 698 ayv~Q~~~l~~~ti~eNI~fg~~~-~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~ 776 (1513)
+|++|+++++..|++||+.++.+. ++++..+.++.+++.+.++.+|.|.+|.+.....+||||||||++||||+..+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999989999999887543 3445667778888888888999999999999999999999999999999999999
Q ss_pred EEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEec
Q 000432 777 IYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAG 837 (1513)
Q Consensus 777 illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g 837 (1513)
++||||||++||+.+.+.+. +.+..+.+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLK-ERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHH-HHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999987776 4566655568999999999988779999999999998654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=346.29 Aligned_cols=443 Identities=19% Similarity=0.207 Sum_probs=313.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCHH------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000432 376 WIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSG------EIINYMSVDVQRISDFIFYSN-YMFMLPVQISLAIY 448 (1513)
Q Consensus 376 ~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G------~i~nl~s~D~~~i~~~~~~~~-~~~~~pl~i~~~l~ 448 (1513)
..+..+++..+.|.-|...+.+|-+.-...++-. ..| ..=+++..|+..+.+....+. .+.-..++++....
T Consensus 106 ~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~-~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~ 184 (604)
T COG4178 106 QTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA-QAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTG 184 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH-hcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455678999999999999999999877544322 222 234588888888777554433 23333444444555
Q ss_pred HHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchh
Q 000432 449 ILRTNLG---------------LGSLAALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWD 513 (1513)
Q Consensus 449 ~L~~~lg---------------~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E 513 (1513)
+||...| ....+.++-.+....+...++|...+...+..+....--.....+.++-..|-+|+-|
T Consensus 185 iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE 264 (604)
T COG4178 185 ILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGE 264 (604)
T ss_pred HHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCc
Confidence 6663333 1122222222222222334444444443333333223223455788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Q 000432 514 TRFLQKLESLRQVECIWLWKSLR----LSATSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNL 589 (1513)
Q Consensus 514 ~~f~~~i~~~R~~E~~~~~~~~~----~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~L~~pl~~l 589 (1513)
+...+++++.-..-++..++... +..+.....++++++ -...++-.++.+.++.|.+..+...|+.+...+..+
T Consensus 265 ~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~--P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswf 342 (604)
T COG4178 265 KVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVL--PILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWF 342 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHH--HHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 98888776543332222222211 111111122222211 111222235678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc--cccccccccCC------CCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCc
Q 000432 590 PDLLSNIAQGKVSADRIAAYLQEDE--IQRDAVEYVPK------GRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGM 661 (1513)
Q Consensus 590 p~~i~~~~~a~vs~~RI~~fL~~~e--~~~~~~~~~~~------~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~ 661 (1513)
-+.+..+.+-++++.|+.+|-+.-+ ..++.....+. ...+..|.++|++..=|+. .+.+++.|+++++|+
T Consensus 343 i~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~ll~~l~~~v~~G~ 420 (604)
T COG4178 343 IDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELNFEVRPGE 420 (604)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--CeeeccceeeeCCCC
Confidence 9999999999999999999985322 10111000000 1114689999999987653 489999999999999
Q ss_pred EEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC--eEEEEcCCCcccCccHHHHHccCCC---CCchHHHHHHHHHhcH
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--TKAYVPQSPWILTGNIRENILFGNQ---YDSCKYDRTVEACALV 736 (1513)
Q Consensus 662 ~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g--~~ayv~Q~~~l~~~ti~eNI~fg~~---~~~~~~~~v~~~~~l~ 736 (1513)
.+.|.|+||||||||+++|.|..|--+|+|..+. ..-|+||.|++..||.||-|++.++ ++++.+.+++.+|+|.
T Consensus 421 ~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~ 500 (604)
T COG4178 421 RLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLG 500 (604)
T ss_pred EEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcH
Confidence 9999999999999999999999999999998873 3699999999999999999999763 6778899999999999
Q ss_pred HHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCC
Q 000432 737 KDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQV 816 (1513)
Q Consensus 737 ~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~ 816 (1513)
+-.+.+.+-++ -...||||||||+++||.++++|++++|||+|||||++++..+++ .+++.+.+.|+|-|.||.
T Consensus 501 ~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q-~l~~~lp~~tvISV~Hr~ 574 (604)
T COG4178 501 DLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQ-LLKEELPDATVISVGHRP 574 (604)
T ss_pred HHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHH-HHHhhCCCCEEEEeccch
Confidence 88888754332 445799999999999999999999999999999999999888875 577778999999999999
Q ss_pred CccccCCEEEEEe
Q 000432 817 EFLPAADIILVME 829 (1513)
Q Consensus 817 ~~l~~~d~i~vl~ 829 (1513)
......++.+.+.
T Consensus 575 tl~~~h~~~l~l~ 587 (604)
T COG4178 575 TLWNFHSRQLELL 587 (604)
T ss_pred hhHHHHhhheeec
Confidence 8877766665554
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=333.18 Aligned_cols=170 Identities=32% Similarity=0.571 Sum_probs=158.0
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
++++|++++|+.. ++|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+ .++|+++++
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 4789999999643 5999999999999999999999999999999999999999999999999998766 678899999
Q ss_pred EcCCCccccC-cHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEE
Q 000432 1342 IPQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSIL 1420 (1513)
Q Consensus 1342 VpQdp~LF~g-TIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~IL 1420 (1513)
+||+|.+|.+ |+++|+. ||||||||++||||++++|+||
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999987 9999973 9999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEE
Q 000432 1421 VLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRI 1474 (1513)
Q Consensus 1421 iLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~I 1474 (1513)
+|||||++||..+.+.+.+.|++.. ++.|+|+++|+.+.+.+ ||+|++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999998865 46899999999999885 999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=349.33 Aligned_cols=208 Identities=29% Similarity=0.430 Sum_probs=181.4
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 5899999999974 3599999999999999999999999999999999999999999999987 35799
Q ss_pred EEcCCCcccc---CcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCC
Q 000432 1341 IIPQDPTLFD---GTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKS 1417 (1513)
Q Consensus 1341 iVpQdp~LF~---gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~ 1417 (1513)
|+||+|.++. .|+++|+......+++++.++++.+++.+..... ...||||||||++||||++++|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAP-----------MQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCC-----------hhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998765 4899997543345678899999999987665432 3579999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcCChHHHHH
Q 000432 1418 SILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDSFFSQL 1494 (1513)
Q Consensus 1418 ~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~l 1494 (1513)
++|+|||||++||+.+...+.+.|++..+ ++|+|+|+|+++.+.. ||+|++|++ ++++.|+++++.++ ..|.++
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~--~~~~~~ 216 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH--PEFISM 216 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC--HHHHHH
Confidence 99999999999999999999999987643 7899999999999866 999999965 79999999998753 455555
Q ss_pred H
Q 000432 1495 I 1495 (1513)
Q Consensus 1495 ~ 1495 (1513)
+
T Consensus 217 ~ 217 (251)
T PRK09544 217 F 217 (251)
T ss_pred h
Confidence 4
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=334.27 Aligned_cols=172 Identities=35% Similarity=0.544 Sum_probs=159.6
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCC--hHHhhhce
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG--LHDLRSRL 1339 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~--l~~LR~~i 1339 (1513)
|+++|++++|++ .++++|+||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+++ ....|+.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 578999999964 35999999999999999999999999999999999999999999999999998876 56788999
Q ss_pred EEEcCCCccccC-cHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCC
Q 000432 1340 GIIPQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSS 1418 (1513)
Q Consensus 1340 siVpQdp~LF~g-TIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ 1418 (1513)
+|+||+|.+|.+ |+++|+... ||+|||||++||||++++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999998865 999998752 99999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCE
Q 000432 1419 ILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGR 1473 (1513)
Q Consensus 1419 ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~ 1473 (1513)
+++|||||++||+.+...+.+.|++..+ ++|+|+++|+++.+.+ ||+|++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999988654 5899999999999985 99999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=336.30 Aligned_cols=192 Identities=28% Similarity=0.413 Sum_probs=156.3
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe--------------
Q 000432 632 VEVVNGKFSWNPES-SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------- 696 (1513)
Q Consensus 632 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------- 696 (1513)
++++|++..|.... ..++|+++||+|++||++||+|||||||||||++|.|.-.|++|+|.++|.
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 56889999886432 247899999999999999999999999999999999999999999999983
Q ss_pred ---EEEEcCCCcccC-ccHHHHHccCCCCC-------chHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHH
Q 000432 697 ---KAYVPQSPWILT-GNIRENILFGNQYD-------SCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRI 765 (1513)
Q Consensus 697 ---~ayv~Q~~~l~~-~ti~eNI~fg~~~~-------~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi 765 (1513)
+|||+|+..|.. -|++|||.+...+. .++.+..++..+|.+... ......|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 599999998875 59999999532221 112222233333332221 134568999999999
Q ss_pred HHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhh--cCCcEEEEEccCCCccccCCEEEEEeCCeEE
Q 000432 766 QIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI--LKDKSVLYVTHQVEFLPAADIILVMENGRIA 834 (1513)
Q Consensus 766 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~--~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~ 834 (1513)
|||||+..+|+|++.||||.+||.++++.+++ .+..+ ..|+|+|+|||+......||+++.|+||++.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~-ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLE-LLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 99999999999999999999999999999986 45444 3488999999999999999999999999954
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=350.61 Aligned_cols=221 Identities=18% Similarity=0.348 Sum_probs=182.8
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCee-----CCCCChHH-
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVD-----ITKIGLHD- 1334 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvd-----I~~i~l~~- 1334 (1513)
.|+++||+++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +..++..+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGGG--KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCCc--eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 58999999999643 58999999999999999999999999999999999999999999999988 77776554
Q ss_pred ---hhhceEEEcCCCc--c-ccCcHhhccCC----CCC----CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCC
Q 000432 1335 ---LRSRLGIIPQDPT--L-FDGTVRGNLDP----LVQ----YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWS 1400 (1513)
Q Consensus 1335 ---LR~~isiVpQdp~--L-F~gTIR~NLdp----~~~----~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLS 1400 (1513)
+++.++++||+|. + +..|+.+|+.. ... ..++++.+.++..++.+ +.......+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~LS 150 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAFS 150 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhcC
Confidence 3467999999985 2 34588888731 111 12344555566555531 23344567899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEe
Q 000432 1401 VGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEY 1477 (1513)
Q Consensus 1401 gGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~ 1477 (1513)
||||||++|||||+++|++|+|||||++||+.+.+.+.+.|++..+ +.|+|+|+|+++.+.. ||++++|++|++++.
T Consensus 151 gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999987643 7899999999999986 999999999999999
Q ss_pred cChhHHHhcCChHHHH
Q 000432 1478 DSPTKLLEREDSFFSQ 1493 (1513)
Q Consensus 1478 Gtp~eLl~~~~~~f~~ 1493 (1513)
|+++++..++...|.+
T Consensus 231 ~~~~~~~~~~~~~~~~ 246 (253)
T TIGR02323 231 GLTDQVLDDPQHPYTQ 246 (253)
T ss_pred CCHHHHhcCCCCHHHH
Confidence 9999998765444443
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=345.17 Aligned_cols=201 Identities=28% Similarity=0.495 Sum_probs=174.7
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe--------------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------- 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------- 696 (1513)
.++++|++|+|+++ .++|+|+|++|++|+.++|+|+||||||||++.+.|.++|.+|+|.++|.
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999764 68999999999999999999999999999999999999999999999884
Q ss_pred EEEEcCCC--cccCccHHHHHccCCC---CCc----hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 000432 697 KAYVPQSP--WILTGNIRENILFGNQ---YDS----CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQI 767 (1513)
Q Consensus 697 ~ayv~Q~~--~l~~~ti~eNI~fg~~---~~~----~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~l 767 (1513)
+|||.|+| .+|..||.|.+.||.. .++ ++.+++++.|++.+..+. ...+|||||||||||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r-----------~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDR-----------PPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccC-----------CccccCCcceeeHHh
Confidence 69999999 8999999999999964 333 334556666666554333 346899999999999
Q ss_pred HHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000432 768 ARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-K-DKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLK 844 (1513)
Q Consensus 768 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~-~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~ 844 (1513)
|.+|..+|+++|||||||+||+...+.+.+ .++.+. . ++|+|++||+++.+.. ||++++|++|+++.+|+++++.+
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~-~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLE-LLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHH-HHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 999999999999999999999999888875 455553 3 5899999999999776 99999999999999999988876
Q ss_pred c
Q 000432 845 Q 845 (1513)
Q Consensus 845 ~ 845 (1513)
.
T Consensus 229 ~ 229 (235)
T COG1122 229 D 229 (235)
T ss_pred h
Confidence 4
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=320.81 Aligned_cols=505 Identities=16% Similarity=0.169 Sum_probs=328.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000432 305 YKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVE-TIAQRQWIFGARQL 383 (1513)
Q Consensus 305 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~-~~~~~~~~~~~~~~ 383 (1513)
.-.++|.+++.++....+.++... ++..++..+-+++-......... +.+.++++...++. .+.+.- ...+
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~---~g~~lLa~in~al~e~~~~~~~~-l~~f~~llllf~~ss~is~lg----~t~~ 75 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGA---LGIGLLAFINQALIETADTSLLV-LPEFLGLLLLFMVSSLISQLG----LTTL 75 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcccceee-HHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 345677788777665555544443 33334433334443222221111 11122222222222 222222 2334
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000432 384 GLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMFMLPVQISLAIYILRTNLGLGSLAALA 463 (1513)
Q Consensus 384 ~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~~~l~~L~~~lg~~~l~~l~ 463 (1513)
|.+.-..++..+.+|.+.-+....++.+++.++..++.|+..|.-.+..+..+....+.+..++..|+..-+.+.+..++
T Consensus 76 gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV 155 (546)
T COG4615 76 GQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVV 155 (546)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55555555566677777777777777889999999999999998555555544444433444445555444455556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhH--HHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 000432 464 ATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDT--RFLQKL-ESLRQVECIWLWKSLRLSAT 540 (1513)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~--~f~~~i-~~~R~~E~~~~~~~~~~~~~ 540 (1513)
.+++.+..+....++..+...+..+..|+-.+..+.++.|-|.+|+..-.. .+.+.+ .+.++.+. ...+...+
T Consensus 156 ~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~----~~~~~n~f 231 (546)
T COG4615 156 WIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH----HIIRANTF 231 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh----hhhhhhHH
Confidence 666666666666666666666778888999999999999999999865322 122222 22222221 11122222
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 000432 541 S-AFIFWGSPTFISVVTFGACMLLGIQ-LTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRD 618 (1513)
Q Consensus 541 ~-~~~~~~~p~~v~~~~f~~~~~~~~~-Lt~~~~ft~l~l~~~L~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~ 618 (1513)
. ....|...++.+++....|+...-. -+...+.|+....-.++.|+.++...++.+.+|.++++||.++-..|+..+-
T Consensus 232 ~~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~ 311 (546)
T COG4615 232 HLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADF 311 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccC
Confidence 1 2334555555555554444433321 1223445555556678999999999999999999999999998765543322
Q ss_pred cccccCCCCCcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCeE-
Q 000432 619 AVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK- 697 (1513)
Q Consensus 619 ~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~~- 697 (1513)
..+ .+. +.-..++++|+.|+|++. ..-+..||++|++||++-|+|.|||||||+++++.|++.|++|+|.+||+.
T Consensus 312 ~~~-q~~-p~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV 387 (546)
T COG4615 312 PRP-QAF-PDWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV 387 (546)
T ss_pred CCC-CcC-CcccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccC
Confidence 111 111 123479999999999864 377899999999999999999999999999999999999999999999964
Q ss_pred ------------EEEcCCCcccCccHHHHHccCCC-CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHH
Q 000432 698 ------------AYVPQSPWILTGNIRENILFGNQ-YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQR 764 (1513)
Q Consensus 698 ------------ayv~Q~~~l~~~ti~eNI~fg~~-~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqR 764 (1513)
+-|.-+-|+|..++ -++. -.++..++-++..++....+ +.+|--+ ...||-|||.|
T Consensus 388 ~~e~ledYR~LfSavFsDyhLF~~ll-----~~e~~as~q~i~~~LqrLel~~kts-l~d~~fs-----~~kLStGQkKR 456 (546)
T COG4615 388 SAEQLEDYRKLFSAVFSDYHLFDQLL-----GPEGKASPQLIEKWLQRLELAHKTS-LNDGRFS-----NLKLSTGQKKR 456 (546)
T ss_pred CCCCHHHHHHHHHHHhhhHhhhHhhh-----CCccCCChHHHHHHHHHHHHhhhhc-ccCCccc-----ccccccchHHH
Confidence 23444556665433 1222 23444455455444443322 2333222 24799999999
Q ss_pred HHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCccccCCEEEEEeCCeEEEe
Q 000432 765 IQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI-LKDKSVLYVTHQVEFLPAADIILVMENGRIAQA 836 (1513)
Q Consensus 765 i~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~ 836 (1513)
+|+--|++-+.|||+|||=-+--||+=.+..++..+-.+ ..|||++.|||+-.+...|||++.|++|+++|.
T Consensus 457 lAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 457 LALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 999999999999999999999999999777776655333 259999999999999999999999999999874
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=338.40 Aligned_cols=185 Identities=26% Similarity=0.349 Sum_probs=163.9
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc--CCCCCcEEEEcCeeCCCCChHHh-hhc
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRI--VEPTMGSIIIDNVDITKIGLHDL-RSR 1338 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl--~ep~~G~I~IDGvdI~~i~l~~L-R~~ 1338 (1513)
++++|++++|++ .++|+|+||++++||.+||+|++|||||||+++|.|+ ++|++|+|.+||.++.+.+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999974 3599999999999999999999999999999999999 58999999999999998887654 566
Q ss_pred eEEEcCCCccccC-cHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCC
Q 000432 1339 LGIIPQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKS 1417 (1513)
Q Consensus 1339 isiVpQdp~LF~g-TIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~ 1417 (1513)
++|+||+|.+|.+ |+++|+ .. ...+||||||||++||||++++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l------------------------~~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL------------------------RY-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHH------------------------hh-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999976 555554 00 12479999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHh--hcCEEEEEeCCEEeEecChhHHH
Q 000432 1418 SILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVI--DSDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1418 ~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~--~~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
+||+|||||++||.++...+.+.|++.. +++|+|+++|+++.+. .||+|++|++|++++.| +.|+.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 9999999999999999999999998764 3789999999999998 59999999999999999 55664
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=348.28 Aligned_cols=203 Identities=26% Similarity=0.347 Sum_probs=169.2
Q ss_pred EEEEEEEEEEcCC--CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCcEEEEcCeeCCCCChHHhh
Q 000432 1262 ISFHNLQIRYAEH--LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE---PTMGSIIIDNVDITKIGLHDLR 1336 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~--~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e---p~~G~I~IDGvdI~~i~l~~LR 1336 (1513)
++|+||+++|+.. .+++|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5799999999765 3679999999999999999999999999999999999999 99999999999885 34678
Q ss_pred hceEEEcCCCccccC-cHhhccCCCC-----CCCHH-----HHHH-HHHHcCCcHHHHhhhccccchhccCCCCCChhHH
Q 000432 1337 SRLGIIPQDPTLFDG-TVRGNLDPLV-----QYSDK-----QVWE-ALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQR 1404 (1513)
Q Consensus 1337 ~~isiVpQdp~LF~g-TIR~NLdp~~-----~~sde-----ei~~-aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQR 1404 (1513)
++++++||++.+|.+ |+++|+.... ...++ .+.+ .++..++ +........+||+|||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLAL-----------TRIGGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcc-----------hhhhcccccCcCHHHH
Confidence 999999999999987 9999996421 11111 1111 2333332 2222344568999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCh-hhH-hhcCEEEEEeCCEEeEec
Q 000432 1405 QLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRI-HTV-IDSDLVLVLSDGRIAEYD 1478 (1513)
Q Consensus 1405 Qrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl-~ti-~~~DrIlVLd~G~IvE~G 1478 (1513)
||++||||++++|+||+|||||++||+.+...+.+.|++.. +++|+|+++|++ ..+ ..||+|++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998764 478999999998 355 459999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=353.39 Aligned_cols=208 Identities=22% Similarity=0.351 Sum_probs=176.7
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhh-hce
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLR-SRL 1339 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR-~~i 1339 (1513)
.|+++||+++|+++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. ..+ +++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccceE
Confidence 59999999999643 359999999999999999999999999999999999999999999999998752 233 469
Q ss_pred EEEcCCCcc---ccCcHhhccCCC--C---------CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHH
Q 000432 1340 GIIPQDPTL---FDGTVRGNLDPL--V---------QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQ 1405 (1513)
Q Consensus 1340 siVpQdp~L---F~gTIR~NLdp~--~---------~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQ 1405 (1513)
+|+||+|.+ +..++++|+... . ...++++.++++..++.+.. |+.+ .+|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~----~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-------HRQI----GELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-------cCCc----ccCCHHHHH
Confidence 999999975 456899997521 0 11234567788888886553 3333 469999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHH
Q 000432 1406 LFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKL 1483 (1513)
Q Consensus 1406 rl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eL 1483 (1513)
|++|||||+++|+||+|||||++||+++.+.+.+.|++.. +++|||+|+|+++.+.. ||+++++ +|++++.|+++++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999998764 47899999999998865 9999777 8999999999998
Q ss_pred Hh
Q 000432 1484 LE 1485 (1513)
Q Consensus 1484 l~ 1485 (1513)
.+
T Consensus 229 ~~ 230 (272)
T PRK15056 229 FT 230 (272)
T ss_pred cC
Confidence 64
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=339.02 Aligned_cols=190 Identities=26% Similarity=0.323 Sum_probs=162.3
Q ss_pred eEEEEEEEEEEcCC--CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCcEEEEcCeeCCCCChHHh
Q 000432 1261 TISFHNLQIRYAEH--LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE---PTMGSIIIDNVDITKIGLHDL 1335 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~--~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~e---p~~G~I~IDGvdI~~i~l~~L 1335 (1513)
.+.++||+|.|+.. ..++|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 46899999999753 4579999999999999999999999999999999999999 89999999999998765 457
Q ss_pred hhceEEEcCCCccccC-cHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHc
Q 000432 1336 RSRLGIIPQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLL 1414 (1513)
Q Consensus 1336 R~~isiVpQdp~LF~g-TIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALL 1414 (1513)
|++++++||++.+|.+ |+++||...... . .+ +....||+|||||++||||++
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------~--------------~~----~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC---------K--------------GN----EFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh---------c--------------cc----cchhhCCHHHHHHHHHHHHHh
Confidence 8899999999988875 999999642110 0 12 233579999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEec-cChhhHh-hcCEEEEEeCCEEeEec
Q 000432 1415 KKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIA-HRIHTVI-DSDLVLVLSDGRIAEYD 1478 (1513)
Q Consensus 1415 r~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IA-HRl~ti~-~~DrIlVLd~G~IvE~G 1478 (1513)
++|+||+|||||++||+++.+.+.+.|++..+ ++|+|+++ |+.+.+. .||+|++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999998654 46766654 5566664 59999999999999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=358.51 Aligned_cols=209 Identities=24% Similarity=0.407 Sum_probs=170.8
Q ss_pred cceEEEEeEEEEeCCCC--CCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC-----------
Q 000432 629 EFEVEVVNGKFSWNPES--SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG----------- 695 (1513)
Q Consensus 629 ~~~I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g----------- 695 (1513)
+..|+++|++|+|+... ..++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 34699999999997421 24699999999999999999999999999999999999999999999875
Q ss_pred ------------------eEEEEcCCC--cccCccHHHHHccCCC---CCchHHHHHHHHHhcHHHHhhccCCCC-cccc
Q 000432 696 ------------------TKAYVPQSP--WILTGNIRENILFGNQ---YDSCKYDRTVEACALVKDFELFASGDL-TEIG 751 (1513)
Q Consensus 696 ------------------~~ayv~Q~~--~l~~~ti~eNI~fg~~---~~~~~~~~v~~~~~l~~d~~~l~~Gd~-T~Ig 751 (1513)
.++||+|+| ++|+.||+|||.|+.. .+.+...+ ++..+ ++.+ |.. ...+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~--~~~~~---l~~~--gL~~~~~~ 171 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK--LAKFY---LNKM--GLDDSYLE 171 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH--HHHHH---HHHc--CCChhHhc
Confidence 158999998 7999999999998742 12221111 11111 2222 221 2356
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCccc-cCCEEEEEe
Q 000432 752 ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI-LKDKSVLYVTHQVEFLP-AADIILVME 829 (1513)
Q Consensus 752 e~g~~LSGGQkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~TvilvtH~~~~l~-~~d~i~vl~ 829 (1513)
..+.+||||||||++||||+.++|+++|||||||+||+.+.+.+++ .+..+ .+++|+|+|||+++.+. .||+|++|+
T Consensus 172 ~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~-~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~ 250 (320)
T PRK13631 172 RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ-LILDAKANNKTVFVITHTMEHVLEVADEVIVMD 250 (320)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 7788999999999999999999999999999999999999887764 55544 35899999999999874 599999999
Q ss_pred CCeEEEecChHHHHhc
Q 000432 830 NGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 830 ~G~i~~~g~~~~l~~~ 845 (1513)
+|++++.|+++++.+.
T Consensus 251 ~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 251 KGKILKTGTPYEIFTD 266 (320)
T ss_pred CCEEEEeCCHHHHhcC
Confidence 9999999999998764
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=342.53 Aligned_cols=200 Identities=25% Similarity=0.373 Sum_probs=170.5
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCC----ChHHhhh
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKI----GLHDLRS 1337 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i----~l~~LR~ 1337 (1513)
+++ ||+++|+.. .+ |+||+|++ |.+||+|++|||||||+++|.|+++|++|+|.+||.++... +...+|+
T Consensus 2 ~~~-~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 2 LCV-DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred cee-eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 345 899999763 24 99999999 99999999999999999999999999999999999998643 3346788
Q ss_pred ceEEEcCCCcccc-CcHhhccCCC-CCC----CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHH
Q 000432 1338 RLGIIPQDPTLFD-GTVRGNLDPL-VQY----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGR 1411 (1513)
Q Consensus 1338 ~isiVpQdp~LF~-gTIR~NLdp~-~~~----sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LAR 1411 (1513)
+++++||++.+|. .|+++|+... ..+ .++++.++++..++.+.. .....+||||||||++|||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~ 144 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLL-----------NRYPAQLSGGEKQRVALAR 144 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHh-----------hcCcccCCHHHHHHHHHHH
Confidence 9999999999986 5999999642 111 234566777777765433 3345689999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEec
Q 000432 1412 TLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYD 1478 (1513)
Q Consensus 1412 ALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~G 1478 (1513)
|++++|+||+|||||++||.++.+.+.+.|++..+ ++|+|+|+|+++.+.. ||+|++|++|++++.|
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 145 ALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988643 7899999999999865 9999999999999875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=337.08 Aligned_cols=182 Identities=29% Similarity=0.428 Sum_probs=161.8
Q ss_pred eEEEEEEEEEEcCC----CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccC--CCCCcEEEEcCeeCCCCChHH
Q 000432 1261 TISFHNLQIRYAEH----LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIV--EPTMGSIIIDNVDITKIGLHD 1334 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~----~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~--ep~~G~I~IDGvdI~~i~l~~ 1334 (1513)
.|+++||+++|+.. ..++|+|+||+|++||++||+|++|||||||+++|.|++ +|++|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999752 246999999999999999999999999999999999999 9999999999999875 36
Q ss_pred hhhceEEEcCCCccccC-cHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1335 LRSRLGIIPQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1335 LR~~isiVpQdp~LF~g-TIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
+|++++++||++.+|.+ |+++|+.... .. + .||+|||||++||||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~------------~~-------------~--------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA------------KL-------------R--------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH------------Hh-------------c--------cCCHHHHHHHHHHHHH
Confidence 78899999999998875 9999985210 00 0 7999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChh-hHhh-cCEEEEEeCCEEeEec
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIH-TVID-SDLVLVLSDGRIAEYD 1478 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~-ti~~-~DrIlVLd~G~IvE~G 1478 (1513)
+++|++++|||||++||..+.+.+.+.|++.. +++|+|+++|+++ .+.+ ||+|++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998865 4799999999997 4544 9999999999998765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=318.75 Aligned_cols=212 Identities=28% Similarity=0.411 Sum_probs=184.9
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
+++.+++.+|++ ...+++||||+++.||.+||.|++||||||+++.|..++.|++|+|+|||+|+.+. +...|++||+
T Consensus 2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcce
Confidence 678999999986 33489999999999999999999999999999999999999999999999999885 5678999999
Q ss_pred EcCCCcccc-CcHhhccCCCC---CCCHH----HHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHH
Q 000432 1342 IPQDPTLFD-GTVRGNLDPLV---QYSDK----QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1342 VpQdp~LF~-gTIR~NLdp~~---~~sde----ei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
++-+.-|+. -|.||||.++. +.++. ++.+.-+.-++.+.. |..++ +||-|+|||++|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-------~rRv~----~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-------DRRVG----EFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-------HHHHh----hhchhhHHHHHHHHHH
Confidence 997776775 49999997653 33333 445555555655543 44554 5899999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccChhhHh-hcCEEEEEeCCEEeEecChhHHHhc
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEFK-DRTVVTIAHRIHTVI-DSDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~-~~TvI~IAHRl~ti~-~~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
.++|+|+|||||||+||.-|.+.+++-|++... +++||+-+|-++.++ -||||+++++|+++..|+++++.++
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 999999999999999999999999999988764 999999999999999 4999999999999999999999875
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=363.79 Aligned_cols=202 Identities=26% Similarity=0.416 Sum_probs=169.6
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-----------EEE
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-----------KAY 699 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-----------~ay 699 (1513)
.++++|++++|+. +.++|+|+||++++|++++|+|||||||||||++|+|+.+|++|+|.++|. ++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4889999999942 257999999999999999999999999999999999999999999999984 699
Q ss_pred EcCCCcccC-ccHHHHHccCCCC---Cc----hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000432 700 VPQSPWILT-GNIRENILFGNQY---DS----CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAV 771 (1513)
Q Consensus 700 v~Q~~~l~~-~ti~eNI~fg~~~---~~----~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal 771 (1513)
|+|++.+|. .||+|||.|+... +. ++.+++++..++.+.. .....+|||||||||+||||+
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLL-----------DRKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 999999995 6999999998532 22 1223344444443322 334468999999999999999
Q ss_pred hcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHHHHhcC
Q 000432 772 YQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELLKQN 846 (1513)
Q Consensus 772 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~--~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~l~~~~ 846 (1513)
+.+|+++|||||||+||+.+.+++.+. ++.+.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++.++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~-l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLE-IQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 999999999999999999998888654 554433 789999999998765 59999999999999999999997653
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=333.54 Aligned_cols=172 Identities=26% Similarity=0.468 Sum_probs=157.1
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCh-HHhhhce
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGL-HDLRSRL 1339 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l-~~LR~~i 1339 (1513)
.|+++|++++| +|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ...|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999999 8999999999999999999999999999999999999999999999999998874 4568899
Q ss_pred EEEcCCC----ccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHcc
Q 000432 1340 GIIPQDP----TLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLK 1415 (1513)
Q Consensus 1340 siVpQdp----~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr 1415 (1513)
+|+||++ .++..|+++|+..... ||+|||||++||||+++
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 3445799999864210 99999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEE
Q 000432 1416 KSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRI 1474 (1513)
Q Consensus 1416 ~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~I 1474 (1513)
+|+||+|||||++||+++.+.+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999998764 47999999999999987 999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=362.20 Aligned_cols=202 Identities=24% Similarity=0.385 Sum_probs=167.7
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe--------------
Q 000432 632 VEVVNGKFSWNPES-SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------- 696 (1513)
Q Consensus 632 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------- 696 (1513)
|+++|++++|+..+ ..++|+|+||+|++||+++|+|+||||||||+++|.|+.+|++|+|.++|.
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 347999999999999999999999999999999999999999999999873
Q ss_pred --EEEEcCCCcccC-ccHHHHHccCCC---CCchH-H---HHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 000432 697 --KAYVPQSPWILT-GNIRENILFGNQ---YDSCK-Y---DRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766 (1513)
Q Consensus 697 --~ayv~Q~~~l~~-~ti~eNI~fg~~---~~~~~-~---~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~ 766 (1513)
++|++|++.++. .|++|||.|+.. .+.+. . .+.++..++.+ ........|||||||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~-----------~~~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD-----------KHDSYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHHHHHHH
Confidence 699999999995 699999998642 22221 1 22222222221 223455789999999999
Q ss_pred HHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHH
Q 000432 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELL 843 (1513)
Q Consensus 767 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~--~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~ 843 (1513)
||||+.++|+++|||||||+||+.+.+.+.+ .++.+.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~-lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILE-LLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999888864 5555533 7999999999999865 9999999999999999999997
Q ss_pred hc
Q 000432 844 KQ 845 (1513)
Q Consensus 844 ~~ 845 (1513)
..
T Consensus 230 ~~ 231 (343)
T TIGR02314 230 SH 231 (343)
T ss_pred cC
Confidence 54
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=347.83 Aligned_cols=212 Identities=20% Similarity=0.244 Sum_probs=179.0
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc--CCCCCcEEEEcCeeCCCCChHHhhh-
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRI--VEPTMGSIIIDNVDITKIGLHDLRS- 1337 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl--~ep~~G~I~IDGvdI~~i~l~~LR~- 1337 (1513)
.|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+ ++|++|+|.+||.++..++.+..++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4999999999964 2599999999999999999999999999999999998 6899999999999999888766554
Q ss_pred ceEEEcCCCccccC-cHhhccCCC-C---------CCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChh
Q 000432 1338 RLGIIPQDPTLFDG-TVRGNLDPL-V---------QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVG 1402 (1513)
Q Consensus 1338 ~isiVpQdp~LF~g-TIR~NLdp~-~---------~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgG 1402 (1513)
.++++||+|.+|.+ |+++|+... . +.+ .+++.++++.+++.+. .++..+. ..||||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~---~~LSgG 155 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPS------FLSRNVN---EGFSGG 155 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchh------hhccccc---cCCCHH
Confidence 58999999999986 789987531 1 011 1345667777776521 1222222 259999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh--cCEEEEEeCCEEeEecC
Q 000432 1403 QRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID--SDLVLVLSDGRIAEYDS 1479 (1513)
Q Consensus 1403 QRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~--~DrIlVLd~G~IvE~Gt 1479 (1513)
||||++||||++++|+||||||||++||.++...+.+.|++.. +++|+|+++|+++.+.. ||+|++|++|++++.|+
T Consensus 156 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (252)
T CHL00131 156 EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999998765 47999999999999876 89999999999999999
Q ss_pred hhHH
Q 000432 1480 PTKL 1483 (1513)
Q Consensus 1480 p~eL 1483 (1513)
|+++
T Consensus 236 ~~~~ 239 (252)
T CHL00131 236 AELA 239 (252)
T ss_pred hhhh
Confidence 9843
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=325.40 Aligned_cols=164 Identities=27% Similarity=0.357 Sum_probs=151.4
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++|++++|+.+ +++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 5789999999644 45999999999999999999999999999999999999999999999983 68999
Q ss_pred EcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000432 1342 IPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILV 1421 (1513)
Q Consensus 1342 VpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILi 1421 (1513)
+||+|.++++|+++|+... ....||||||||++||||++++|++++
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999642 246899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhcCEEEEEeCCE
Q 000432 1422 LDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGR 1473 (1513)
Q Consensus 1422 LDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~ 1473 (1513)
|||||++||.++.+.+.+.|++. ++|+|+++|+++....||+|++|++|-
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999886 689999999999888899999999864
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=339.75 Aligned_cols=198 Identities=45% Similarity=0.827 Sum_probs=177.5
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC-----------------
Q 000432 633 EVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG----------------- 695 (1513)
Q Consensus 633 ~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g----------------- 695 (1513)
.+.|++|+|+.+ .++++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 467899999753 5799999999999999999999999999999999999999999999866
Q ss_pred eEEEEcCCCcccCccHHHHHccCCCCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000432 696 TKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDA 775 (1513)
Q Consensus 696 ~~ayv~Q~~~l~~~ti~eNI~fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~ 775 (1513)
.++|++|+|.+++.|++||+.++.+.+.++.+++++++++.+.++.+|.|++|.++....+||||||||++||||++.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 26899999999999999999988766666677888999998888889999999999999999999999999999999999
Q ss_pred CEEEeeCcCCCCCHHHHHHHHHH-HHhhhc-CCcEEEEEccCCCccccCCEEEEEeCCe
Q 000432 776 DIYLLDDPFSAVDAHTGTQLFKD-CLMGIL-KDKSVLYVTHQVEFLPAADIILVMENGR 832 (1513)
Q Consensus 776 ~illLDep~salD~~~~~~i~~~-~~~~~~-~~~TvilvtH~~~~l~~~d~i~vl~~G~ 832 (1513)
+++||||||++||+.+.+.+.+. .++.+. .++|+|++||+.+.++.||++++|++|+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999998877663 444433 3789999999999988899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=335.26 Aligned_cols=181 Identities=24% Similarity=0.348 Sum_probs=160.6
Q ss_pred eEEEEEEEEEEcCC--CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccC--CCCCcEEEEcCeeCCCCChHHhh
Q 000432 1261 TISFHNLQIRYAEH--LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIV--EPTMGSIIIDNVDITKIGLHDLR 1336 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~--~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~--ep~~G~I~IDGvdI~~i~l~~LR 1336 (1513)
.|+++|++++|++. ..++|+|+||+|++||++||+|++|||||||+++|.|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 58999999999752 246999999999999999999999999999999999986 489999999999986 5678
Q ss_pred hceEEEcCCCccccC-cHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHcc
Q 000432 1337 SRLGIIPQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLK 1415 (1513)
Q Consensus 1337 ~~isiVpQdp~LF~g-TIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr 1415 (1513)
++++++||+|.+|.+ |+++|+... ..++ +||||||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~---------~~~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFS---------ALLR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHH---------HHHh------------------------cCCHHHhHHHHHHHHHhc
Confidence 899999999988875 999998631 0000 799999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhh-H-hhcCEEEEEeC-CEEeEec
Q 000432 1416 KSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHT-V-IDSDLVLVLSD-GRIAEYD 1478 (1513)
Q Consensus 1416 ~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVLd~-G~IvE~G 1478 (1513)
+|++|+|||||+++|.++...+.+.|++.. +++|+|+|+|+++. + ..||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999998764 47999999999984 4 56999999999 9999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=364.24 Aligned_cols=192 Identities=27% Similarity=0.379 Sum_probs=161.3
Q ss_pred CCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC-----------------eEEEEcCCCcccC-
Q 000432 647 SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG-----------------TKAYVPQSPWILT- 708 (1513)
Q Consensus 647 ~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g-----------------~~ayv~Q~~~l~~- 708 (1513)
+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++| .++||+|++++|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 5799999999999999999999999999999999999999999999988 3799999999997
Q ss_pred ccHHHHHccCCCC---Cc-hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEeeCcC
Q 000432 709 GNIRENILFGNQY---DS-CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPF 784 (1513)
Q Consensus 709 ~ti~eNI~fg~~~---~~-~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~illLDep~ 784 (1513)
.||+|||.|+.++ +. ++.+++.+.+... |..........+|||||||||+|||||+++|+|+||||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~v--------gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~ 157 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLV--------GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAF 157 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 5999999987543 22 2334444444321 2223355667799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCcc-ccCCEEEEEeCCeEEEecChHHHHhcC
Q 000432 785 SAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFL-PAADIILVMENGRIAQAGRFEELLKQN 846 (1513)
Q Consensus 785 salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l-~~~d~i~vl~~G~i~~~g~~~~l~~~~ 846 (1513)
||||+.+.+.+.+.+..-.. .++|+|+|||+++.+ ..||+|++|++|++++.|++++++++.
T Consensus 158 saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 158 SALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 99999999888765543322 389999999999986 559999999999999999999998653
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=339.86 Aligned_cols=193 Identities=24% Similarity=0.359 Sum_probs=165.8
Q ss_pred EEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCh----HHhhhce
Q 000432 1264 FHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGL----HDLRSRL 1339 (1513)
Q Consensus 1264 f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l----~~LR~~i 1339 (1513)
++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.+++.++. ...|+++
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4789999964 359999999999999999999999999999999999999999999999999875542 2467899
Q ss_pred EEEcCCCcccc-CcHhhccCCC---CC----CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHH
Q 000432 1340 GIIPQDPTLFD-GTVRGNLDPL---VQ----YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGR 1411 (1513)
Q Consensus 1340 siVpQdp~LF~-gTIR~NLdp~---~~----~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LAR 1411 (1513)
+++||+|.+|. .|+++|+... .. ..++++.++++..++.+...+ ...+||+|||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQ-----------KIYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcC-----------ChhhCCHHHHHHHHHHH
Confidence 99999999997 6999999642 11 124567778888887554322 23579999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhcCEEEEE
Q 000432 1412 TLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVIDSDLVLVL 1469 (1513)
Q Consensus 1412 ALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVL 1469 (1513)
||+++|++|||||||++||+++.+.+.+.|++.. +++|+|+++|+++.+..||+|++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999998864 478999999999988889999986
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=342.96 Aligned_cols=206 Identities=23% Similarity=0.335 Sum_probs=172.3
Q ss_pred ceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC----CCcEEEEcCeeCCCCChHHhhhceEEEcCCCc-ccc--
Q 000432 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP----TMGSIIIDNVDITKIGLHDLRSRLGIIPQDPT-LFD-- 1350 (1513)
Q Consensus 1278 vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep----~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~-LF~-- 1350 (1513)
+|+|+||+|++||++||+|++|||||||+++|.|+++| ++|+|.+||.++... ...+++++|+||+|. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 58999999999999999999999999999999999999 899999999998764 223468999999995 343
Q ss_pred CcHhhccCC----CCC---CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000432 1351 GTVRGNLDP----LVQ---YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLD 1423 (1513)
Q Consensus 1351 gTIR~NLdp----~~~---~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLD 1423 (1513)
-|+.+|+.. .+. ..++++.++++.+++.+. ++.......+||||||||++||||++++|+||+||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 488888731 111 123457888888887631 12233445689999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcCChHHHH
Q 000432 1424 EATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDSFFSQ 1493 (1513)
Q Consensus 1424 EaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~~~~f~~ 1493 (1513)
|||++||.++.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++...+...|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 99999999999999999988653 7899999999999975 9999999999999999999998765454444
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=330.33 Aligned_cols=177 Identities=30% Similarity=0.521 Sum_probs=161.6
Q ss_pred EEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEE
Q 000432 1263 SFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGII 1342 (1513)
Q Consensus 1263 ~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiV 1342 (1513)
+++||+++|+. .++|+|+||++++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999964 3599999999999999999999999999999999999999999999999999998888899999999
Q ss_pred cCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000432 1343 PQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVL 1422 (1513)
Q Consensus 1343 pQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiL 1422 (1513)
|| +++.+++.++..+ .+.+||+|||||++||||++++|++++|
T Consensus 79 ~q--------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 7788888765432 3467999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEec
Q 000432 1423 DEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYD 1478 (1513)
Q Consensus 1423 DEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~G 1478 (1513)
||||++||.++.+.+.+.|++..+ ++|+|+++|+++.+.+ ||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999987654 7899999999999855 9999999999998764
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=345.14 Aligned_cols=199 Identities=30% Similarity=0.402 Sum_probs=163.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe---------------
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT--------------- 696 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~--------------- 696 (1513)
++++|++++|+. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468899999963 47999999999999999999999999999999999999999999999772
Q ss_pred -EEEEcCCCcccCc-cHHHHHccCCC----CCchH----HHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 000432 697 -KAYVPQSPWILTG-NIRENILFGNQ----YDSCK----YDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766 (1513)
Q Consensus 697 -~ayv~Q~~~l~~~-ti~eNI~fg~~----~~~~~----~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~ 766 (1513)
++||+|++.++.. |++||+.++.. .+.+. ..++++.+++. ........+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR-----------GAEDLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHHHHH
Confidence 6899999999876 99999988632 12221 12222222221 1223445689999999999
Q ss_pred HHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHH
Q 000432 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELL 843 (1513)
Q Consensus 767 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~ 843 (1513)
||||+.++|+++||||||++||+++.+.+.+ .++.+. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDD-LIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 9999999999999999999999999877764 565543 37899999999998765 9999999999999999998886
Q ss_pred hc
Q 000432 844 KQ 845 (1513)
Q Consensus 844 ~~ 845 (1513)
+.
T Consensus 226 ~~ 227 (235)
T cd03261 226 AS 227 (235)
T ss_pred CC
Confidence 54
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=320.57 Aligned_cols=215 Identities=27% Similarity=0.443 Sum_probs=184.4
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHH-hhhc
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHD-LRSR 1338 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~-LR~~ 1338 (1513)
+.+..+|+..+|... +|.+||||++++||.||+.||+||||||.+..+.|++.|++|+|.+||.||+.++++. -|-.
T Consensus 3 ~~L~a~~l~K~y~kr--~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhCCe--eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 467889999999754 5999999999999999999999999999999999999999999999999999999998 4677
Q ss_pred eEEEcCCCccccC-cHhhccCCCCCCCH---------HHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHH
Q 000432 1339 LGIIPQDPTLFDG-TVRGNLDPLVQYSD---------KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFC 1408 (1513)
Q Consensus 1339 isiVpQdp~LF~g-TIR~NLdp~~~~sd---------eei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~ 1408 (1513)
|||.||||.+|.+ ||++||.-.-+..+ +++.+.|+.-++. ..-...|..||||||.|+-
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~-----------hlr~~~a~sLSGGERRR~E 149 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-----------HLRDSKAYSLSGGERRRVE 149 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchH-----------HHhcCcccccccchHHHHH
Confidence 9999999999987 99999963222222 1233444444433 2333457899999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhh-HhhcCEEEEEeCCEEeEecChhHHHhc
Q 000432 1409 LGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHT-VIDSDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1409 LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~t-i~~~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
|||||..+|+.++||||.|++||-+-..||+.|+... +|--|++.-|.... +.-|||.+++.+|+|...|+|+|+.++
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 9999999999999999999999999999999998765 46788999998764 555999999999999999999999987
Q ss_pred C
Q 000432 1487 E 1487 (1513)
Q Consensus 1487 ~ 1487 (1513)
+
T Consensus 230 ~ 230 (243)
T COG1137 230 E 230 (243)
T ss_pred h
Confidence 4
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=350.93 Aligned_cols=203 Identities=26% Similarity=0.447 Sum_probs=168.1
Q ss_pred EEEEeEEEEeCCCCC--CCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------
Q 000432 632 VEVVNGKFSWNPESS--SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------- 696 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~--~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------------- 696 (1513)
|+++|++|+|+.... +++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999974321 36999999999999999999999999999999999999999999999873
Q ss_pred ----EEEEcCCC--cccCccHHHHHccCCC---CCch----HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHH
Q 000432 697 ----KAYVPQSP--WILTGNIRENILFGNQ---YDSC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQ 763 (1513)
Q Consensus 697 ----~ayv~Q~~--~l~~~ti~eNI~fg~~---~~~~----~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkq 763 (1513)
++||+|+| .++..|+.|||.|+.. .+.+ ++.+.++..++.++ .......+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADE----------FWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hccCCcccCCHHHHH
Confidence 58999998 7888999999998743 1221 22333333333211 123556789999999
Q ss_pred HHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHH
Q 000432 764 RIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEE 841 (1513)
Q Consensus 764 Ri~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~ 841 (1513)
|++||||++.+|+++||||||++||+.+.+.+.+ .+..+. +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~-~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQ-LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999877764 565543 4899999999999875 599999999999999999999
Q ss_pred HHhc
Q 000432 842 LLKQ 845 (1513)
Q Consensus 842 l~~~ 845 (1513)
+..+
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8653
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=325.13 Aligned_cols=203 Identities=28% Similarity=0.433 Sum_probs=169.2
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC---------------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--------------- 695 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g--------------- 695 (1513)
.|+++|++..|+. .+.+|+||||+|++||.+||+|+|||||||||++|.|..+|++|+|.++|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 5899999999974 46899999999999999999999999999999999999999999999998
Q ss_pred -eEEEEcCCCcccC-ccHHHHHccCCC------------CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHH
Q 000432 696 -TKAYVPQSPWILT-GNIRENILFGNQ------------YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQ 761 (1513)
Q Consensus 696 -~~ayv~Q~~~l~~-~ti~eNI~fg~~------------~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQ 761 (1513)
.+||++|++-|.+ .||-+|++.|.- +.++....++++..- +..+ -.--.+..+|||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLer---vgi~-----~~A~qra~~LSGGQ 152 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALER---VGIL-----DKAYQRASTLSGGQ 152 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHH---cCcH-----HHHHHHhccCCcch
Confidence 3599999998875 599999998852 233333333333211 1111 11224567899999
Q ss_pred HHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhh--cCCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecC
Q 000432 762 KQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI--LKDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGR 838 (1513)
Q Consensus 762 kqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~--~~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~ 838 (1513)
+|||+|||||+++|+|+|-|||+|+|||.+++++++. ++.. ..|.|+|+.-|++++.. .||||+-|++|+|++.|+
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~-l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~ 231 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDI-LKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGP 231 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHH-HHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCC
Confidence 9999999999999999999999999999999999864 4333 35899999999999965 599999999999999999
Q ss_pred hHHHHh
Q 000432 839 FEELLK 844 (1513)
Q Consensus 839 ~~~l~~ 844 (1513)
.+|+-+
T Consensus 232 ~~el~~ 237 (258)
T COG3638 232 ASELTD 237 (258)
T ss_pred hhhhhH
Confidence 999643
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=350.56 Aligned_cols=205 Identities=25% Similarity=0.430 Sum_probs=168.6
Q ss_pred eEEEEeEEEEeCCCC--CCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC-------------
Q 000432 631 EVEVVNGKFSWNPES--SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG------------- 695 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g------------- 695 (1513)
.++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999996422 24799999999999999999999999999999999999999999999987
Q ss_pred --eEEEEcCCC--cccCccHHHHHccCCC---CCchH----HHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHH
Q 000432 696 --TKAYVPQSP--WILTGNIRENILFGNQ---YDSCK----YDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQR 764 (1513)
Q Consensus 696 --~~ayv~Q~~--~l~~~ti~eNI~fg~~---~~~~~----~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqR 764 (1513)
.++||+|+| .+++.|++|||.|+.. .+.+. .+++++.++|. +.+........||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHH
Confidence 258999998 6788999999998642 22221 22333333332 1122345667899999999
Q ss_pred HHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHH
Q 000432 765 IQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEE 841 (1513)
Q Consensus 765 i~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~ 841 (1513)
++||||+..+|+++||||||++||+.+.+.+. +++..+. .++|+|+|||+++.+. .||+|++|++|++++.|+.++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEIL-NKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999988776 4566554 3799999999999875 599999999999999999998
Q ss_pred HHhc
Q 000432 842 LLKQ 845 (1513)
Q Consensus 842 l~~~ 845 (1513)
+.+.
T Consensus 232 ~~~~ 235 (287)
T PRK13637 232 VFKE 235 (287)
T ss_pred HHhC
Confidence 8653
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=357.39 Aligned_cols=201 Identities=27% Similarity=0.408 Sum_probs=168.2
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-----------EEE
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-----------KAY 699 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-----------~ay 699 (1513)
.|+++|++++|.. .++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|. ++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 82 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICM 82 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 6899999999963 46899999999999999999999999999999999999999999999884 699
Q ss_pred EcCCCcccC-ccHHHHHccCCCC---CchH-HHH---HHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000432 700 VPQSPWILT-GNIRENILFGNQY---DSCK-YDR---TVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAV 771 (1513)
Q Consensus 700 v~Q~~~l~~-~ti~eNI~fg~~~---~~~~-~~~---v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal 771 (1513)
|+|++.+|. .||+|||.|+... +++. .++ +++..++.. ........|||||||||+||||+
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~-----------~~~r~~~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAG-----------FEDRYVDQISGGQQQRVALARAL 151 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHHHHH
Confidence 999999996 5999999998532 2221 222 222222221 12344578999999999999999
Q ss_pred hcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCCCcc-ccCCEEEEEeCCeEEEecChHHHHhcC
Q 000432 772 YQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DKSVLYVTHQVEFL-PAADIILVMENGRIAQAGRFEELLKQN 846 (1513)
Q Consensus 772 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~--~~TvilvtH~~~~l-~~~d~i~vl~~G~i~~~g~~~~l~~~~ 846 (1513)
+.+|+++|||||||+||+.+.+.+.+ .++.+.+ ++|+|+|||+.+.+ ..||+|++|++|++++.|+++++.++.
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~-~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMRE-KIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999887754 5555543 79999999999986 459999999999999999999987653
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=348.18 Aligned_cols=203 Identities=28% Similarity=0.435 Sum_probs=169.3
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------E
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------K 697 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------~ 697 (1513)
.++++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|+|.++|. +
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 488999999996433346999999999999999999999999999999999999999999999883 5
Q ss_pred EEEcCCCc--ccCccHHHHHccCCC---CCc----hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHH
Q 000432 698 AYVPQSPW--ILTGNIRENILFGNQ---YDS----CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIA 768 (1513)
Q Consensus 698 ayv~Q~~~--l~~~ti~eNI~fg~~---~~~----~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lA 768 (1513)
+||+|+|. ++..||+|||.|+.. .++ ++.+++++..++.+.. .....+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFK-----------EREPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHHHHHHHH
Confidence 89999984 567799999998742 222 2234444444443322 234468999999999999
Q ss_pred HHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000432 769 RAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 769 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
||++++|+++||||||++||+.+.+.++ +++..+. .|+|+|+|||+++.+..||+|++|++|++++.|+.+++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELI-KTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999877776 4566554 38999999999998878999999999999999999888654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=359.81 Aligned_cols=227 Identities=25% Similarity=0.379 Sum_probs=193.4
Q ss_pred eEEEEEEEEEEcCCCC--cceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCC----CcEEEEcCeeCCCCChHH
Q 000432 1261 TISFHNLQIRYAEHLP--SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPT----MGSIIIDNVDITKIGLHD 1334 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~--~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~----~G~I~IDGvdI~~i~l~~ 1334 (1513)
-++++|++..|..... .+++||||+|.+||.+||||+|||||||++++|.|+.++. +|+|.+||.|+..++-+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6899999999975433 4999999999999999999999999999999999999988 899999999999999877
Q ss_pred hh----hceEEEcCCCc-cccC--cHhhccC----CCC----CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCC
Q 000432 1335 LR----SRLGIIPQDPT-LFDG--TVRGNLD----PLV----QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENW 1399 (1513)
Q Consensus 1335 LR----~~isiVpQdp~-LF~g--TIR~NLd----p~~----~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nL 1399 (1513)
+| ++|++|||||. .++- ||.+-|. -.. +...++..+.|+++++.+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 64 47999999996 5553 5555542 111 1134567888889988765443 1223568
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeE
Q 000432 1400 SVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAE 1476 (1513)
Q Consensus 1400 SgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE 1476 (1513)
|||||||+.||+||..+|++||+||||.+||..|.++|.+.|++.. .+.++|+|||++..+.. ||||+||++|++||
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998875 58899999999999988 99999999999999
Q ss_pred ecChhHHHhcCChHHHHHHH
Q 000432 1477 YDSPTKLLEREDSFFSQLIK 1496 (1513)
Q Consensus 1477 ~Gtp~eLl~~~~~~f~~l~~ 1496 (1513)
.|+++++++++..-|-+..-
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll 255 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLL 255 (539)
T ss_pred ecCHHHHHhccCCcccHHHH
Confidence 99999999998777766543
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=350.66 Aligned_cols=203 Identities=26% Similarity=0.420 Sum_probs=168.3
Q ss_pred EEEEeEEEEeCCCC--CCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------
Q 000432 632 VEVVNGKFSWNPES--SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------- 696 (1513)
Q Consensus 632 I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------------- 696 (1513)
++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 246999999999999999999999999999999999999999999999873
Q ss_pred ----EEEEcCCC--cccCccHHHHHccCCC---CCch----HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHH
Q 000432 697 ----KAYVPQSP--WILTGNIRENILFGNQ---YDSC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQ 763 (1513)
Q Consensus 697 ----~ayv~Q~~--~l~~~ti~eNI~fg~~---~~~~----~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkq 763 (1513)
++||+|+| .+++.||+|||.|+.. .+.+ +.+++++.++|.+++ ......+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHHH
Confidence 68999998 6888899999998742 2222 233344444443222 13345689999999
Q ss_pred HHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChH
Q 000432 764 RIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFE 840 (1513)
Q Consensus 764 Ri~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~ 840 (1513)
|++||||++++|+++||||||++||+.+...+.+ .++.+. .+.|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~-~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMME-MFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999877764 565553 3799999999999875 59999999999999999999
Q ss_pred HHHhc
Q 000432 841 ELLKQ 845 (1513)
Q Consensus 841 ~l~~~ 845 (1513)
++.+.
T Consensus 232 ~~~~~ 236 (290)
T PRK13634 232 EIFAD 236 (290)
T ss_pred HHhcC
Confidence 88654
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=341.69 Aligned_cols=207 Identities=21% Similarity=0.302 Sum_probs=176.9
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
++++||+++ .+|+|+||+|++||++||+|++|||||||+++|.|+++ .+|+|.+||.++...+...+|+.++|
T Consensus 1 ~~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 1 MQLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred Ccccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEE
Confidence 356788875 27999999999999999999999999999999999985 59999999999998888888889999
Q ss_pred EcCCCc-cccCcHhhccCCCCC--CC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHc
Q 000432 1342 IPQDPT-LFDGTVRGNLDPLVQ--YS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLL 1414 (1513)
Q Consensus 1342 VpQdp~-LF~gTIR~NLdp~~~--~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALL 1414 (1513)
+||++. .+..|+++|+..... .+ ++++.++++..++.+.. ......||||||||++||||++
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKL-----------GRSVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHHHh
Confidence 999985 456799999975321 11 23566777777765433 2234679999999999999999
Q ss_pred c-------CCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHh
Q 000432 1415 K-------KSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1415 r-------~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~ 1485 (1513)
+ +|++|+|||||++||+++...+.+.|++.. +++|+|+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 7 679999999999999999999999998764 47899999999997765 99999999999999999999875
Q ss_pred c
Q 000432 1486 R 1486 (1513)
Q Consensus 1486 ~ 1486 (1513)
.
T Consensus 223 ~ 223 (248)
T PRK03695 223 P 223 (248)
T ss_pred c
Confidence 3
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=337.06 Aligned_cols=205 Identities=30% Similarity=0.445 Sum_probs=175.4
Q ss_pred CcceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-----------
Q 000432 628 SEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT----------- 696 (1513)
Q Consensus 628 ~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~----------- 696 (1513)
....++++|++++|+.....++|+|+||+|++|++++|+|+||||||||+++|+|+.+|++|+|.++|.
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 345799999999997432347999999999999999999999999999999999999999999999873
Q ss_pred --EEEEcCCCcccCccHHHHHccCCCCC-chHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhc
Q 000432 697 --KAYVPQSPWILTGNIRENILFGNQYD-SCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQ 773 (1513)
Q Consensus 697 --~ayv~Q~~~l~~~ti~eNI~fg~~~~-~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~ 773 (1513)
++|++|++.++..|++||+.++.... ...+.+..+...+.+-++.++.|.++.+..+..+|||||||||+||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 69999999999999999999875422 122223333344566678888888888999999999999999999999999
Q ss_pred CCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeE
Q 000432 774 DADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRI 833 (1513)
Q Consensus 774 ~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i 833 (1513)
+|+++||||||++||+++.+.+. +.+..+.+++|+|++||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQ-QALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHH-HHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999977775 456666567899999999999888999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=330.72 Aligned_cols=189 Identities=28% Similarity=0.508 Sum_probs=163.3
Q ss_pred ceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC-------------e
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG-------------T 696 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g-------------~ 696 (1513)
..++++|++++|+.. ..++++|+||+|++|++++|+|+||||||||+++|+|+++|.+|+|.++| .
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 469999999999642 24799999999999999999999999999999999999999999999987 3
Q ss_pred EEEEcCCCcccCccHHHHHccCCCCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000432 697 KAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDAD 776 (1513)
Q Consensus 697 ~ayv~Q~~~l~~~ti~eNI~fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~ 776 (1513)
++||+|+|.++++|++||+.+..+++. +++.+++. ++++..+||||||||++||||++.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~---~~~~~~l~---------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSD---EEIYGALR---------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCH---HHHHHHhh---------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 699999999999999999987544332 22222221 356778999999999999999999999
Q ss_pred EEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEecC
Q 000432 777 IYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGR 838 (1513)
Q Consensus 777 illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~ 838 (1513)
++||||||++||+.+.+.+. +.++...+++|+|++||+++.+..||++++|++|++.+.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQ-KTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHH-HHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999977665 45666556899999999999987899999999999998775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=342.73 Aligned_cols=211 Identities=18% Similarity=0.236 Sum_probs=169.1
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccC--CCCCcEEEEcCeeCCCCChHHhh-hc
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIV--EPTMGSIIIDNVDITKIGLHDLR-SR 1338 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~--ep~~G~I~IDGvdI~~i~l~~LR-~~ 1338 (1513)
|+++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|.|++ +|++|+|.+||.++...+....+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999974 35999999999999999999999999999999999994 69999999999999888776654 57
Q ss_pred eEEEcCCCccccC-cHhhcc-------CCCCC---CC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhH
Q 000432 1339 LGIIPQDPTLFDG-TVRGNL-------DPLVQ---YS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQ 1403 (1513)
Q Consensus 1339 isiVpQdp~LF~g-TIR~NL-------dp~~~---~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQ 1403 (1513)
++++||+|.++.. |..+|+ ..... .. ++.+.+.++..++ |+++.+... ..+|||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~--~~~LS~G~ 150 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKM-------PEDLLTRSV--NVGFSGGE 150 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCC-------ChhhcccCC--CCCCCHHH
Confidence 9999999987754 433332 21110 01 1112233333333 222222111 13699999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccChhhHhh--cCEEEEEeCCEEeEecCh
Q 000432 1404 RQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK-DRTVVTIAHRIHTVID--SDLVLVLSDGRIAEYDSP 1480 (1513)
Q Consensus 1404 RQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~-~~TvI~IAHRl~ti~~--~DrIlVLd~G~IvE~Gtp 1480 (1513)
|||++||||++++|+||+|||||++||.++.+.+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|++
T Consensus 151 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~ 230 (248)
T PRK09580 151 KKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999999987643 6899999999999987 899999999999999998
Q ss_pred hHH
Q 000432 1481 TKL 1483 (1513)
Q Consensus 1481 ~eL 1483 (1513)
++.
T Consensus 231 ~~~ 233 (248)
T PRK09580 231 TLV 233 (248)
T ss_pred HHH
Confidence 854
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=339.79 Aligned_cols=195 Identities=27% Similarity=0.448 Sum_probs=161.0
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCc-----cCCCcEEEECCe----------
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEI-----QKMAGTVKISGT---------- 696 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~-----~~~~G~i~~~g~---------- 696 (1513)
|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|.+ +|.+|+|.++|.
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 468999999963 47999999999999999999999999999999999999 999999999872
Q ss_pred -----EEEEcCCCcccCccHHHHHccCCCC---Cc-----hHHHHHHHHHhcHHHHhhccCCCCccccCC--CCCCChHH
Q 000432 697 -----KAYVPQSPWILTGNIRENILFGNQY---DS-----CKYDRTVEACALVKDFELFASGDLTEIGER--GINMSGGQ 761 (1513)
Q Consensus 697 -----~ayv~Q~~~l~~~ti~eNI~fg~~~---~~-----~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~--g~~LSGGQ 761 (1513)
++|++|++.+++.|++||+.++... .. ++.+++++.+++.+.. ..+ +.+|||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~~LSgG~ 146 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEV-----------KDRLHALGLSGGQ 146 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHH-----------hccCCcccCCHHH
Confidence 5899999999988999999886421 11 1222333333332222 122 47899999
Q ss_pred HHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChH
Q 000432 762 KQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFE 840 (1513)
Q Consensus 762 kqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~ 840 (1513)
|||++||||++++|+++||||||++||+.+.+.++ +.+..+.+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIE-ELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTE 225 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcc
Confidence 99999999999999999999999999999988776 45665544489999999999876 49999999999999999876
Q ss_pred H
Q 000432 841 E 841 (1513)
Q Consensus 841 ~ 841 (1513)
+
T Consensus 226 ~ 226 (227)
T cd03260 226 Q 226 (227)
T ss_pred c
Confidence 5
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=323.80 Aligned_cols=204 Identities=28% Similarity=0.470 Sum_probs=165.8
Q ss_pred eEEEEeEEEEeCCCC-CCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------
Q 000432 631 EVEVVNGKFSWNPES-SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------- 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------------- 696 (1513)
.++++|+++.|+... ..++|+||||+|.+||.++|+|+||||||||.++|+|..+|++|+|.++|+
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999997431 125999999999999999999999999999999999999999999999993
Q ss_pred -EEEEcCCCcc-c--CccHHHHHccCC-----CCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 000432 697 -KAYVPQSPWI-L--TGNIRENILFGN-----QYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQI 767 (1513)
Q Consensus 697 -~ayv~Q~~~l-~--~~ti~eNI~fg~-----~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~l 767 (1513)
+-+|+|+|.- + .-||++-|.=+. +-.+++..++++..+|.+.+ .-.+...|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~----------l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSF----------LDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHH----------HhcCchhcChhHHHHHHH
Confidence 4799999953 2 237776664221 11223345555555555433 123456799999999999
Q ss_pred HHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000432 768 ARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLK 844 (1513)
Q Consensus 768 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~--~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~ 844 (1513)
||||..+|+++|||||||+||+.+..+|++ .+..+.+ +-|.|+|||++..+.+ ||+|+||++|+++|.++-+++..
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~Iln-lL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILN-LLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHH-HHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999999999999999999999999999985 4554444 5599999999999877 99999999999999999999876
Q ss_pred c
Q 000432 845 Q 845 (1513)
Q Consensus 845 ~ 845 (1513)
.
T Consensus 232 ~ 232 (252)
T COG1124 232 H 232 (252)
T ss_pred C
Confidence 5
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=329.23 Aligned_cols=194 Identities=23% Similarity=0.293 Sum_probs=169.0
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
++++|++++|++. .+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.... ..+|+++++
T Consensus 1 l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDGR--ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCCc--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 5789999999653 5899999999999999999999999999999999999999999999999987653 568899999
Q ss_pred EcCCCccc-cCcHhhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCE
Q 000432 1342 IPQDPTLF-DGTVRGNLDPL-VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSI 1419 (1513)
Q Consensus 1342 VpQdp~LF-~gTIR~NLdp~-~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~I 1419 (1513)
+||++.++ ..|+++|+... ...+++++.++++..++.++.. +. ..+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-------RP----VAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-------Cc----hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999886 57999999654 2346778889999999875432 22 357999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhH-hhcCEEEEE
Q 000432 1420 LVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTV-IDSDLVLVL 1469 (1513)
Q Consensus 1420 LiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti-~~~DrIlVL 1469 (1513)
|||||||++||+++.+.+.+.|++.. +++|+|+++|+...+ ..||+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998754 479999999986655 458999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=339.12 Aligned_cols=199 Identities=30% Similarity=0.431 Sum_probs=164.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-----------EEEE
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-----------KAYV 700 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-----------~ayv 700 (1513)
++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++||
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 789999999963 47999999999999999999999999999999999999999999999872 6999
Q ss_pred cCCCcccC-ccHHHHHccCCCC-------CchH----HHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHH
Q 000432 701 PQSPWILT-GNIRENILFGNQY-------DSCK----YDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIA 768 (1513)
Q Consensus 701 ~Q~~~l~~-~ti~eNI~fg~~~-------~~~~----~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lA 768 (1513)
+|+|.++. .|++||+.++... +... .++.++..++ .........+||||||||++||
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~la 148 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQL-----------DWLADRYPAQLSGGQRQRVALA 148 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCC-----------hhhhhcChhhCCHHHHHHHHHH
Confidence 99998885 5999999986432 1111 1122222222 2223445678999999999999
Q ss_pred HHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000432 769 RAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 769 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
||++.+|+++||||||++||+++.+.+. +++..+. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELR-RWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 9999999999999999999999977775 4666553 27899999999998654 999999999999999999888643
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=341.03 Aligned_cols=204 Identities=25% Similarity=0.395 Sum_probs=170.2
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCcc---CCCcEEEECCe-----------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQ---KMAGTVKISGT----------- 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~---~~~G~i~~~g~----------- 696 (1513)
.|+++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999963 479999999999999999999999999999999999984 68999999873
Q ss_pred --EEEEcCCCcccCccHHHHHccCCCC-----C----chHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHH
Q 000432 697 --KAYVPQSPWILTGNIRENILFGNQY-----D----SCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRI 765 (1513)
Q Consensus 697 --~ayv~Q~~~l~~~ti~eNI~fg~~~-----~----~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi 765 (1513)
++|++|++.+++.|++||+.++... . +++..+.++.+++.+.+.. ...+++.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 6999999999999999999876321 1 1123344455554333221 23556789999999999
Q ss_pred HHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 000432 766 QIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELLK 844 (1513)
Q Consensus 766 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~l~~ 844 (1513)
+||||++++|+++||||||++||+++...+. +++..+.+++|+|+|||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIE-ELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999977665 56666666899999999999876 599999999999999999998865
Q ss_pred c
Q 000432 845 Q 845 (1513)
Q Consensus 845 ~ 845 (1513)
.
T Consensus 231 ~ 231 (246)
T PRK14269 231 N 231 (246)
T ss_pred C
Confidence 3
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=356.04 Aligned_cols=202 Identities=27% Similarity=0.392 Sum_probs=169.4
Q ss_pred ceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-----------EE
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-----------KA 698 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-----------~a 698 (1513)
..++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|. ++
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 35899999999963 46899999999999999999999999999999999999999999999984 69
Q ss_pred EEcCCCcccCc-cHHHHHccCCCC---Cch----HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHH
Q 000432 699 YVPQSPWILTG-NIRENILFGNQY---DSC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARA 770 (1513)
Q Consensus 699 yv~Q~~~l~~~-ti~eNI~fg~~~---~~~----~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARa 770 (1513)
||+|++.+|.. ||+|||.|+... +.. +.+++++..++.+..+ .+..+|||||||||+||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~p~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQ-----------RKPHQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHHHHHH
Confidence 99999999955 999999998532 221 2233344444433332 3446899999999999999
Q ss_pred HhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCCCcc-ccCCEEEEEeCCeEEEecChHHHHhcC
Q 000432 771 VYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DKSVLYVTHQVEFL-PAADIILVMENGRIAQAGRFEELLKQN 846 (1513)
Q Consensus 771 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~--~~TvilvtH~~~~l-~~~d~i~vl~~G~i~~~g~~~~l~~~~ 846 (1513)
|+.+|+++|||||||+||+++.+.+.+ .++.+.+ +.|+|+|||+.+.+ ..||+|++|++|+|++.|+++++.++.
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~-~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQN-ELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999777754 5655543 79999999999885 459999999999999999999997654
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=316.06 Aligned_cols=159 Identities=28% Similarity=0.488 Sum_probs=148.4
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChH-HhhhceE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLH-DLRSRLG 1340 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~-~LR~~is 1340 (1513)
|+++|++++|++. ++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+.. ..|++++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 5799999999643 599999999999999999999999999999999999999999999999999988764 4678899
Q ss_pred EEcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEE
Q 000432 1341 IIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSIL 1420 (1513)
Q Consensus 1341 iVpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~IL 1420 (1513)
++|| ||+|||||++||||++++|++|
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 9999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeE
Q 000432 1421 VLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAE 1476 (1513)
Q Consensus 1421 iLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE 1476 (1513)
+|||||++||.++.+.+.+.|++.. ++.|+|+++|+++.+.. ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999998764 47899999999998876 99999999999986
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=341.75 Aligned_cols=205 Identities=24% Similarity=0.428 Sum_probs=168.5
Q ss_pred ceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCcc-----CCCcEEEECC---------
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQ-----KMAGTVKISG--------- 695 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~-----~~~G~i~~~g--------- 695 (1513)
..++++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 35899999999963 469999999999999999999999999999999999874 5899999877
Q ss_pred ------eEEEEcCCCcccCccHHHHHccCCC---C-Cc----hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHH
Q 000432 696 ------TKAYVPQSPWILTGNIRENILFGNQ---Y-DS----CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQ 761 (1513)
Q Consensus 696 ------~~ayv~Q~~~l~~~ti~eNI~fg~~---~-~~----~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQ 761 (1513)
.++|++|++.+++.|++||+.++.. . +. ++.++.++.+++.+.+ .+.......+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-------KDRLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHH
Confidence 2699999999998999999988631 1 11 1222233333332221 123456678999999
Q ss_pred HHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChH
Q 000432 762 KQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFE 840 (1513)
Q Consensus 762 kqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~ 840 (1513)
|||++||||++.+|+++||||||++||+++.+.+. +.+..+.+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIE-ELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999977775 46666656789999999999885 49999999999999999999
Q ss_pred HHHhc
Q 000432 841 ELLKQ 845 (1513)
Q Consensus 841 ~l~~~ 845 (1513)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 88654
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=347.51 Aligned_cols=204 Identities=21% Similarity=0.363 Sum_probs=166.3
Q ss_pred eEEEEeEEEEeCCCC--CCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC-------------
Q 000432 631 EVEVVNGKFSWNPES--SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG------------- 695 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g------------- 695 (1513)
.|+++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|.|.++|++|+|.++|
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 378999999996432 13699999999999999999999999999999999999999999998864
Q ss_pred ------------------------eEEEEcCCC--cccCccHHHHHccCCC---CCchH----HHHHHHHHhcHHHHhhc
Q 000432 696 ------------------------TKAYVPQSP--WILTGNIRENILFGNQ---YDSCK----YDRTVEACALVKDFELF 742 (1513)
Q Consensus 696 ------------------------~~ayv~Q~~--~l~~~ti~eNI~fg~~---~~~~~----~~~v~~~~~l~~d~~~l 742 (1513)
.++||+|+| .++..||+|||.|+.. .+++. ..++++.++|..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~---- 157 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDES---- 157 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----
Confidence 158999986 6788899999998742 22222 2223333333211
Q ss_pred cCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccc-
Q 000432 743 ASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLP- 820 (1513)
Q Consensus 743 ~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~- 820 (1513)
.......+||||||||++||||++.+|+++||||||++||+...+.+.+ .+..+. .|+|+|+|||+++.+.
T Consensus 158 ------~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 158 ------YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILE-IFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred ------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeeCHHHHHH
Confidence 1335567899999999999999999999999999999999998777754 555543 4899999999999864
Q ss_pred cCCEEEEEeCCeEEEecChHHHHhc
Q 000432 821 AADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 821 ~~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
.||+|++|++|++++.|+.+++.+.
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhcC
Confidence 5999999999999999999998654
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=344.81 Aligned_cols=198 Identities=28% Similarity=0.458 Sum_probs=165.7
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------E
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------K 697 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------~ 697 (1513)
-++++|++++|+. ..++|+|+||+|++||+++|+|+||||||||+++|.|.++|++|+|.++|. +
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4889999999963 246999999999999999999999999999999999999999999999883 6
Q ss_pred EEEcCCC--cccCccHHHHHccCCC---CCc----hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHH
Q 000432 698 AYVPQSP--WILTGNIRENILFGNQ---YDS----CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIA 768 (1513)
Q Consensus 698 ayv~Q~~--~l~~~ti~eNI~fg~~---~~~----~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lA 768 (1513)
+||+|+| .++..|++||+.|+.. .+. ++++++++.+++.+..+. ....||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDK-----------PPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999998 6788899999998742 222 233444444454432222 3358999999999999
Q ss_pred HHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHHH
Q 000432 769 RAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEEL 842 (1513)
Q Consensus 769 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~l 842 (1513)
||+..+|+++||||||++||+.+.+.+.+ .+..+. +++|+|++||+++.+. .||+|++|++|++++.|+.+++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLME-ILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999887764 565543 4899999999999975 5999999999999999998654
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=344.75 Aligned_cols=207 Identities=24% Similarity=0.420 Sum_probs=168.3
Q ss_pred eEEEEeEEEEeCCCC--CCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe------------
Q 000432 631 EVEVVNGKFSWNPES--SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------ 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------------ 696 (1513)
.++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996422 247999999999999999999999999999999999999999999999872
Q ss_pred -----EEEEcCCC--cccCccHHHHHccCCC---CCchHHHHHHHHHhcHHHHhhccCCCCc-cccCCCCCCChHHHHHH
Q 000432 697 -----KAYVPQSP--WILTGNIRENILFGNQ---YDSCKYDRTVEACALVKDFELFASGDLT-EIGERGINMSGGQKQRI 765 (1513)
Q Consensus 697 -----~ayv~Q~~--~l~~~ti~eNI~fg~~---~~~~~~~~v~~~~~l~~d~~~l~~Gd~T-~Ige~g~~LSGGQkqRi 765 (1513)
++||+|+| .++..|++|||.|+.. ++.+..++.++. + ++.+ |..+ .....+.+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~--~---l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHR--L---LMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHH--H---HHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 59999997 6888899999998742 232222221111 1 1211 3332 23456789999999999
Q ss_pred HHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHHH
Q 000432 766 QIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEEL 842 (1513)
Q Consensus 766 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~l 842 (1513)
+||||++.+|+++||||||++||+.+.+.+. +.++.+. .++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 233 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVM-RLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999988775 4566553 4899999999999875 5999999999999999999988
Q ss_pred Hhc
Q 000432 843 LKQ 845 (1513)
Q Consensus 843 ~~~ 845 (1513)
.+.
T Consensus 234 ~~~ 236 (286)
T PRK13646 234 FKD 236 (286)
T ss_pred HhC
Confidence 654
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=355.06 Aligned_cols=201 Identities=29% Similarity=0.404 Sum_probs=168.6
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-----------EEE
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-----------KAY 699 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-----------~ay 699 (1513)
.++++|++++|+. .++|+|+||++++|++++|+|||||||||||++|+|+.+|++|+|.++|. ++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 5899999999963 46899999999999999999999999999999999999999999999983 699
Q ss_pred EcCCCcccC-ccHHHHHccCCC---CCch----HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000432 700 VPQSPWILT-GNIRENILFGNQ---YDSC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAV 771 (1513)
Q Consensus 700 v~Q~~~l~~-~ti~eNI~fg~~---~~~~----~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal 771 (1513)
|+|++-+|. .||+|||.|+.. .+.+ +.+++++..+|. ........+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~-----------~~~~~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP-----------GSERKYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-----------chhhCChhhCCHHHHHHHHHHHHH
Confidence 999999995 699999999843 2222 222233333222 223355678999999999999999
Q ss_pred hcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHHHHhcC
Q 000432 772 YQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELLKQN 846 (1513)
Q Consensus 772 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~--~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~l~~~~ 846 (1513)
+.+|+++|||||||+||+.+.+++.+ .++.+.+ +.|+|+|||+.+.+. .||+|++|++|++++.|+++++.++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~-~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRT-EIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999887764 4555433 789999999999864 59999999999999999999998653
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=338.20 Aligned_cols=206 Identities=24% Similarity=0.369 Sum_probs=165.7
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe--------------E
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT--------------K 697 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~--------------~ 697 (1513)
++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|.+|+|.++|. +
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 467899999963 46999999999999999999999999999999999999999999999872 6
Q ss_pred EEEcCCCcccCc-cHHHHHccCCCCCc-hH--------HHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 000432 698 AYVPQSPWILTG-NIRENILFGNQYDS-CK--------YDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQI 767 (1513)
Q Consensus 698 ayv~Q~~~l~~~-ti~eNI~fg~~~~~-~~--------~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~l 767 (1513)
+|++|++.++.+ |++|||.++..... .. ..+..+ ....+-++.+ |..........+||||||||++|
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 154 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREAR-ERAEELLERV--GLADLADRPAGELSYGQQRRLEI 154 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHH-HHHHHHHHHc--CccchhhCChhhCCHHHHHHHHH
Confidence 899999998876 99999988642210 00 000000 0111222222 33334556677899999999999
Q ss_pred HHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000432 768 ARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLK 844 (1513)
Q Consensus 768 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~ 844 (1513)
|||++.+|+++||||||++||+.+.+.+.+ .+..+. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 155 a~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 155 ARALATDPKLLLLDEPAAGLNPEETEELAE-LIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 999999999999999999999999887765 555543 68999999999999865 99999999999999999988754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=374.74 Aligned_cols=212 Identities=25% Similarity=0.333 Sum_probs=182.7
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHh-hhce
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL-RSRL 1339 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~L-R~~i 1339 (1513)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.+.. |+++
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999964 359999999999999999999999999999999999999999999999999988876654 4679
Q ss_pred EEEcCCCccccC-cHhhccCCCC-------CC---C----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHH
Q 000432 1340 GIIPQDPTLFDG-TVRGNLDPLV-------QY---S----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQR 1404 (1513)
Q Consensus 1340 siVpQdp~LF~g-TIR~NLdp~~-------~~---s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQR 1404 (1513)
+||||++.+|.+ |+++|+.... .. + ++++.++++.+++.+. .|.++ .+||||||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~~~----~~LSgG~~ 151 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-------LDEKV----ANLSISHK 151 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-------cccch----hhCCHHHH
Confidence 999999998875 9999996421 10 1 2345667777776432 23333 46999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhH
Q 000432 1405 QLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTK 1482 (1513)
Q Consensus 1405 Qrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~e 1482 (1513)
||++|||||+++|+||||||||++||+.+...+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++|++++.|++++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 99999999999999999999999999999999999998764 47899999999999976 99999999999999999988
Q ss_pred HHh
Q 000432 1483 LLE 1485 (1513)
Q Consensus 1483 Ll~ 1485 (1513)
+..
T Consensus 232 ~~~ 234 (510)
T PRK09700 232 VSN 234 (510)
T ss_pred CCH
Confidence 754
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=356.96 Aligned_cols=200 Identities=29% Similarity=0.403 Sum_probs=167.6
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-----------EEE
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-----------KAY 699 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-----------~ay 699 (1513)
.++++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 4889999999963 46999999999999999999999999999999999999999999999873 699
Q ss_pred EcCCCcccC-ccHHHHHccCCCC---Cc----hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000432 700 VPQSPWILT-GNIRENILFGNQY---DS----CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAV 771 (1513)
Q Consensus 700 v~Q~~~l~~-~ti~eNI~fg~~~---~~----~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal 771 (1513)
|+|++.+|. .||+|||.|+... +. ++.+++++.+++.+. ......+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-----------~~~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHL-----------LDRKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 999999986 5999999987432 21 123333444443322 2334568999999999999999
Q ss_pred hcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHHHHhc
Q 000432 772 YQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 772 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
+.+|+++|||||||+||+++.+.+.+ .++.+. .++|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~-~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRI-EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999877764 455543 2789999999999865 5999999999999999999998764
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=339.35 Aligned_cols=205 Identities=24% Similarity=0.387 Sum_probs=168.4
Q ss_pred ceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccC-----CCcEEEECCe--------
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQK-----MAGTVKISGT-------- 696 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~-----~~G~i~~~g~-------- 696 (1513)
..++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 36999999999963 4699999999999999999999999999999999999987 4899998762
Q ss_pred -------EEEEcCCCcccCccHHHHHccCCCC----CchH----HHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHH
Q 000432 697 -------KAYVPQSPWILTGNIRENILFGNQY----DSCK----YDRTVEACALVKDFELFASGDLTEIGERGINMSGGQ 761 (1513)
Q Consensus 697 -------~ayv~Q~~~l~~~ti~eNI~fg~~~----~~~~----~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQ 761 (1513)
++|++|++.+++.|++|||.|+... +.+. ..+.++.+++.+.+ ++ ....+..+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~----~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KD----KLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HH----HHhCCcccCCHHH
Confidence 6899999999999999999986421 1111 22233333332111 11 2234567899999
Q ss_pred HHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChH
Q 000432 762 KQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFE 840 (1513)
Q Consensus 762 kqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~ 840 (1513)
|||++||||++++|+++||||||++||+++.+.+. +.+..+.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIE-ELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999988776 466666567899999999998754 9999999999999999999
Q ss_pred HHHhc
Q 000432 841 ELLKQ 845 (1513)
Q Consensus 841 ~l~~~ 845 (1513)
++.+.
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 98653
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=336.05 Aligned_cols=190 Identities=27% Similarity=0.379 Sum_probs=163.4
Q ss_pred eeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEcCCCcccc-CcHhhcc
Q 000432 1279 LKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFD-GTVRGNL 1357 (1513)
Q Consensus 1279 Lk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~LF~-gTIR~NL 1357 (1513)
|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+++||+|.+|. .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 589999999999999999999999999999999999999999999999876543 2489999999987 5999998
Q ss_pred CCC-----CCCCH----HHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 000432 1358 DPL-----VQYSD----KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATAS 1428 (1513)
Q Consensus 1358 dp~-----~~~sd----eei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSs 1428 (1513)
... ...++ +++.++++..++.+...+ ....||||||||++|||||+++|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-----------RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcC-----------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 642 22332 236677777777554322 2357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1429 VDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1429 lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
||+.+.+.+.+.|++.. .++|+|+|+|+++.+.. ||+|++|++|++++.|++.+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998764 37899999999999876 9999999999999999887663
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-36 Score=355.01 Aligned_cols=202 Identities=26% Similarity=0.423 Sum_probs=168.8
Q ss_pred ceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCC--cEEEECCe-----------
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMA--GTVKISGT----------- 696 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~--G~i~~~g~----------- 696 (1513)
+.++++|++++|+. .++|+|+||+|++|++++|+|||||||||||++|+|+.+|++ |+|.++|.
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 46899999999963 469999999999999999999999999999999999999999 99999883
Q ss_pred EEEEcCCCcccCc-cHHHHHccCCCC---Cch----HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHH
Q 000432 697 KAYVPQSPWILTG-NIRENILFGNQY---DSC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIA 768 (1513)
Q Consensus 697 ~ayv~Q~~~l~~~-ti~eNI~fg~~~---~~~----~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lA 768 (1513)
++||+|++.+|.. ||+|||.|+... +.+ +.+++++..+|.+. ......+|||||||||+||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~-----------~~~~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDA-----------AAHLPAQLSGGMQQRIAIA 149 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCch-----------hhCChhhCCHHHHHHHHHH
Confidence 6999999999965 999999987431 211 22333333333222 2344568999999999999
Q ss_pred HHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcC---CcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 000432 769 RAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK---DKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELLK 844 (1513)
Q Consensus 769 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~---~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~l~~ 844 (1513)
|||..+|+++|||||||+||+...+++.+ .++.+.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~-~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMRE-EIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHH-HHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999887765 4554433 789999999999865 599999999999999999999986
Q ss_pred cC
Q 000432 845 QN 846 (1513)
Q Consensus 845 ~~ 846 (1513)
+.
T Consensus 229 ~p 230 (362)
T TIGR03258 229 AP 230 (362)
T ss_pred Cc
Confidence 53
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=333.21 Aligned_cols=191 Identities=32% Similarity=0.450 Sum_probs=157.7
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-----------EEEE
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-----------KAYV 700 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-----------~ayv 700 (1513)
++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 468899999963 47999999999999999999999999999999999999999999999873 6999
Q ss_pred cCCCcccC-ccHHHHHccCCCC---Cch----HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000432 701 PQSPWILT-GNIRENILFGNQY---DSC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVY 772 (1513)
Q Consensus 701 ~Q~~~l~~-~ti~eNI~fg~~~---~~~----~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~ 772 (1513)
+|++.++. .|++||+.++... +.+ +.++.++.+++. ........+||||||||++||||+.
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE-----------GLLNRYPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hhhhcChhhCCHHHHHHHHHHHHHh
Confidence 99998885 6999999876421 211 122333333332 2233445689999999999999999
Q ss_pred cCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEec
Q 000432 773 QDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAG 837 (1513)
Q Consensus 773 ~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g 837 (1513)
++|+++||||||++||+.+.+.+.+ .+..+. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELRE-ELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999877764 565543 37999999999998765 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=353.08 Aligned_cols=201 Identities=32% Similarity=0.492 Sum_probs=167.3
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-----------EEE
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-----------KAY 699 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-----------~ay 699 (1513)
.++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEE
Confidence 3789999999963 46999999999999999999999999999999999999999999999883 699
Q ss_pred EcCCCcccC-ccHHHHHccCCCC-------Cch----HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 000432 700 VPQSPWILT-GNIRENILFGNQY-------DSC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQI 767 (1513)
Q Consensus 700 v~Q~~~l~~-~ti~eNI~fg~~~-------~~~----~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~l 767 (1513)
|+|++.++. .|++|||.|+... +.+ +.++.++..++.+ ....+...|||||||||+|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGq~QRval 147 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH-----------LADRYPAQLSGGQKQRVAL 147 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHHHHHHHH
Confidence 999999996 5999999997532 111 1122223222221 2234557899999999999
Q ss_pred HHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 000432 768 ARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELLK 844 (1513)
Q Consensus 768 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~--~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~l~~ 844 (1513)
||||+++|+++|||||||+||+++.+.+.+ .++.+.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~-~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRR-WLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999887764 5655543 789999999999865 499999999999999999999976
Q ss_pred cC
Q 000432 845 QN 846 (1513)
Q Consensus 845 ~~ 846 (1513)
+.
T Consensus 227 ~p 228 (353)
T PRK10851 227 EP 228 (353)
T ss_pred Cc
Confidence 53
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=334.48 Aligned_cols=189 Identities=23% Similarity=0.422 Sum_probs=155.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe---------------
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT--------------- 696 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~--------------- 696 (1513)
++++|++++|+.. .+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6889999999632 246999999999999999999999999999999999999999999999873
Q ss_pred -EEEEcCCCcccC-ccHHHHHccCCC---CC----chHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 000432 697 -KAYVPQSPWILT-GNIRENILFGNQ---YD----SCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQI 767 (1513)
Q Consensus 697 -~ayv~Q~~~l~~-~ti~eNI~fg~~---~~----~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~l 767 (1513)
++|++|++.++. .|++||+.++.. .+ +++..++++.+++.+.. .....+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKA-----------HALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHHHH
Confidence 599999998886 599999987532 11 12233344444443222 23345899999999999
Q ss_pred HHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCcccc-CCEEEEEeCCeE
Q 000432 768 ARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPA-ADIILVMENGRI 833 (1513)
Q Consensus 768 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~~-~d~i~vl~~G~i 833 (1513)
|||++++|+++||||||++||+++.+.+.+ .+..+. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMR-LFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999887765 555543 47899999999999875 999999999975
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=338.55 Aligned_cols=203 Identities=25% Similarity=0.423 Sum_probs=167.6
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCC-----CcEEEECCe----------
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKM-----AGTVKISGT---------- 696 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~-----~G~i~~~g~---------- 696 (1513)
++++|++++|+. .++++|+||+|++||+++|+|+||||||||+++|+|.++|. +|+|.++|.
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 46999999999999999999999999999999999999998 999998762
Q ss_pred -----EEEEcCCCcccCccHHHHHccCCCC----CchH----HHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHH
Q 000432 697 -----KAYVPQSPWILTGNIRENILFGNQY----DSCK----YDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQ 763 (1513)
Q Consensus 697 -----~ayv~Q~~~l~~~ti~eNI~fg~~~----~~~~----~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkq 763 (1513)
++|+||+++++..|++||+.++... +.+. .+++++..++.++++ ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 6899999999999999999875321 1111 222233333321110 2345567799999999
Q ss_pred HHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHH
Q 000432 764 RIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEEL 842 (1513)
Q Consensus 764 Ri~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l 842 (1513)
|++||||++.+|+++||||||++||+++.+.++ ++++.+.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIE-ELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999977775 567666556899999999998764 999999999999999999888
Q ss_pred Hhc
Q 000432 843 LKQ 845 (1513)
Q Consensus 843 ~~~ 845 (1513)
.+.
T Consensus 231 ~~~ 233 (247)
T TIGR00972 231 FTN 233 (247)
T ss_pred HhC
Confidence 643
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=331.27 Aligned_cols=188 Identities=29% Similarity=0.489 Sum_probs=156.9
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC----------eEEEEcC
Q 000432 633 EVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG----------TKAYVPQ 702 (1513)
Q Consensus 633 ~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g----------~~ayv~Q 702 (1513)
+++|++++|+.. +++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .++|++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q 78 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQ 78 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEec
Confidence 357899999631 5799999999999999999999999999999999999999999999988 3699999
Q ss_pred CC--cccCccHHHHHccCCCCC---chHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000432 703 SP--WILTGNIRENILFGNQYD---SCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADI 777 (1513)
Q Consensus 703 ~~--~l~~~ti~eNI~fg~~~~---~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~i 777 (1513)
+| .+++.|++||+.++.+.. +++.+++++.+++.+..+ .....||||||||++||||++.+|++
T Consensus 79 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 79 DVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE-----------RHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred ChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcC-----------CCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 98 467889999999864321 234455566665543322 23357999999999999999999999
Q ss_pred EEeeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCcccc-CCEEEEEeCCeEE
Q 000432 778 YLLDDPFSAVDAHTGTQLFKDCLMGI-LKDKSVLYVTHQVEFLPA-ADIILVMENGRIA 834 (1513)
Q Consensus 778 llLDep~salD~~~~~~i~~~~~~~~-~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~ 834 (1513)
+||||||++||+.+.+.+. +.++.+ .+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVG-ELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999977775 456554 357999999999999865 9999999999974
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=334.25 Aligned_cols=196 Identities=34% Similarity=0.471 Sum_probs=160.4
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC--------eEEEEcC
Q 000432 632 VEVVNGKFSWNPES-SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--------TKAYVPQ 702 (1513)
Q Consensus 632 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g--------~~ayv~Q 702 (1513)
++++|++++|+... .+++|+|+||+|++|++++|+|+||||||||+++|+|.++|++|+|.++| .++||+|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46889999996421 14799999999999999999999999999999999999999999999987 3699999
Q ss_pred CCcccC-ccHHHHHccCCCC---Cc----hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcC
Q 000432 703 SPWILT-GNIRENILFGNQY---DS----CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQD 774 (1513)
Q Consensus 703 ~~~l~~-~ti~eNI~fg~~~---~~----~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~ 774 (1513)
++.++. .|++||+.++... +. ++.++.++..++.+. ......+||||||||++||||++++
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGF-----------ENAYPHQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCCcccCCHHHHHHHHHHHHHHcC
Confidence 999887 6999999875321 11 122333344443322 2334468999999999999999999
Q ss_pred CCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEe--CCeEEEecCh
Q 000432 775 ADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLP-AADIILVME--NGRIAQAGRF 839 (1513)
Q Consensus 775 ~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~-~~d~i~vl~--~G~i~~~g~~ 839 (1513)
|+++||||||++||+.+.+.+++ .+..+. .++|+|++||+++.+. .||+|++|+ +|++++.++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~-~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQE-ELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHH-HHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 99999999999999999888765 555543 3799999999999875 599999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=371.68 Aligned_cols=212 Identities=22% Similarity=0.321 Sum_probs=181.0
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHH-hhhce
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHD-LRSRL 1339 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~-LR~~i 1339 (1513)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 35999999999999999999999999999999999999999999999999997766554 36789
Q ss_pred EEEcCCCccccC-cHhhccCCCC-------CCCH----HHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHH
Q 000432 1340 GIIPQDPTLFDG-TVRGNLDPLV-------QYSD----KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLF 1407 (1513)
Q Consensus 1340 siVpQdp~LF~g-TIR~NLdp~~-------~~sd----eei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl 1407 (1513)
+++||++.+|.. |+++|+.+.. ..+. +++.++++..++.+. +|.++ .+||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-------SDKLV----GELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-------ccCch----hhCCHHHHHHH
Confidence 999999988865 9999997421 1122 345667777766432 23333 46999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHh
Q 000432 1408 CLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1408 ~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~ 1485 (1513)
+|||||+.+|++|+|||||++||+++.+.+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 99999999999999999999999999999999998753 47899999999999876 99999999999999999887643
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=380.47 Aligned_cols=223 Identities=22% Similarity=0.340 Sum_probs=182.8
Q ss_pred eEEEEEEEEEEcCC--CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCC----------
Q 000432 1261 TISFHNLQIRYAEH--LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDIT---------- 1328 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~--~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~---------- 1328 (1513)
.|+++|++++|+.. ..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 69999999999632 236999999999999999999999999999999999999999999999998652
Q ss_pred CCChH---Hhh-hceEEEcCCC--cccc-CcHhhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhc
Q 000432 1329 KIGLH---DLR-SRLGIIPQDP--TLFD-GTVRGNLDPL----VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVA 1393 (1513)
Q Consensus 1329 ~i~l~---~LR-~~isiVpQdp--~LF~-gTIR~NLdp~----~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~ 1393 (1513)
+.+.. .+| ++|++|+|+| .++. -||++|+... ...+ ++++.++|+.+++.+. +....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHHh
Confidence 22222 344 5799999999 5776 4999999631 1122 2456778888887431 01112
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEeccChhhHhh-cCEEEEEe
Q 000432 1394 ENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-K-DRTVVTIAHRIHTVID-SDLVLVLS 1470 (1513)
Q Consensus 1394 e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~-~~TvI~IAHRl~ti~~-~DrIlVLd 1470 (1513)
....+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. + ++|||+|+|+++.+.. ||||+||+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 2345799999999999999999999999999999999999999999999865 2 7899999999999876 99999999
Q ss_pred CCEEeEecChhHHHhcCChHH
Q 000432 1471 DGRIAEYDSPTKLLEREDSFF 1491 (1513)
Q Consensus 1471 ~G~IvE~Gtp~eLl~~~~~~f 1491 (1513)
+|+|++.|+++++++.+...|
T Consensus 244 ~G~i~~~g~~~~~~~~~~~~~ 264 (623)
T PRK10261 244 QGEAVETGSVEQIFHAPQHPY 264 (623)
T ss_pred CCeecccCCHHHhhcCCCChh
Confidence 999999999999986543333
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=337.34 Aligned_cols=197 Identities=32% Similarity=0.442 Sum_probs=162.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe---------------
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT--------------- 696 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~--------------- 696 (1513)
++++|++++|+. ++++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 678999999962 257999999999999999999999999999999999999999999999872
Q ss_pred -EEEEcCCCcccC-ccHHHHHccCCCC------------Cch---HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCCh
Q 000432 697 -KAYVPQSPWILT-GNIRENILFGNQY------------DSC---KYDRTVEACALVKDFELFASGDLTEIGERGINMSG 759 (1513)
Q Consensus 697 -~ayv~Q~~~l~~-~ti~eNI~fg~~~------------~~~---~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSG 759 (1513)
++|++|++.++. .|++||+.++... .++ +..+.++.+++ .........+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGL-----------ADKAYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCc-----------HhhhcCCcccCCH
Confidence 699999998886 5999999876321 011 12222222222 2233456678999
Q ss_pred HHHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCeEEEe
Q 000432 760 GQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLP-AADIILVMENGRIAQA 836 (1513)
Q Consensus 760 GQkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~ 836 (1513)
|||||++||||++.+|+++||||||++||+.+.+.+. +.+..+. .++|+|+|||+++.+. .||++++|++|++++.
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 227 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVM-DYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 9999999999999999999999999999999977775 4565553 3789999999999975 5999999999999999
Q ss_pred cChHHH
Q 000432 837 GRFEEL 842 (1513)
Q Consensus 837 g~~~~l 842 (1513)
|+++++
T Consensus 228 ~~~~~~ 233 (243)
T TIGR02315 228 GAPSEL 233 (243)
T ss_pred CCHHHh
Confidence 998886
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=371.81 Aligned_cols=212 Identities=25% Similarity=0.345 Sum_probs=182.0
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC--CCcEEEEcCeeCCCCChHH-hhh
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP--TMGSIIIDNVDITKIGLHD-LRS 1337 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep--~~G~I~IDGvdI~~i~l~~-LR~ 1337 (1513)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++...+..+ .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 5999999999964 3599999999999999999999999999999999999996 8999999999998877665 467
Q ss_pred ceEEEcCCCccccC-cHhhccCCCCC------CC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHH
Q 000432 1338 RLGIIPQDPTLFDG-TVRGNLDPLVQ------YS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQL 1406 (1513)
Q Consensus 1338 ~isiVpQdp~LF~g-TIR~NLdp~~~------~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQr 1406 (1513)
+++||||+|.+|.. |+++|+..... .+ .+++.++++..++.+. .+.. ..+||||||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~----~~~LSgGqkqr 151 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDIN-------PATP----VGNLGLGQQQL 151 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCC-------cccc----hhhCCHHHHHH
Confidence 89999999998865 99999974311 12 1346667777766432 2333 35699999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1407 FCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1407 l~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
++|||||+.+|+|||||||||+||+++...+.+.|++.. ++.|||+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999999999998763 47899999999999876 9999999999999999998875
Q ss_pred h
Q 000432 1485 E 1485 (1513)
Q Consensus 1485 ~ 1485 (1513)
.
T Consensus 232 ~ 232 (506)
T PRK13549 232 E 232 (506)
T ss_pred H
Confidence 3
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=369.18 Aligned_cols=213 Identities=27% Similarity=0.363 Sum_probs=185.8
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhh-hce
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLR-SRL 1339 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR-~~i 1339 (1513)
.|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+++ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999964 3599999999999999999999999999999999999999999999999999888777765 469
Q ss_pred EEEcCCCccccC-cHhhccCCCCC---CCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHcc
Q 000432 1340 GIIPQDPTLFDG-TVRGNLDPLVQ---YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLK 1415 (1513)
Q Consensus 1340 siVpQdp~LF~g-TIR~NLdp~~~---~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr 1415 (1513)
+++||++.+|.+ |+++|+..... ..++++.++++..++.+. ++..+ .+||||||||++|||||++
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-------LDSSA----GSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-------ccCCh----hhCCHHHHHHHHHHHHHHc
Confidence 999999998875 99999975321 123567778888877543 23333 4699999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhc
Q 000432 1416 KSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1416 ~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
+|+||+|||||++||+.+...+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|++++.|+++++.+.
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD 230 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHH
Confidence 999999999999999999999999998764 47899999999999876 999999999999999999988653
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=335.20 Aligned_cols=201 Identities=25% Similarity=0.420 Sum_probs=168.5
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------E
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------K 697 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------~ 697 (1513)
.++++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4789999999953 47999999999999999999999999999999999999999999999873 6
Q ss_pred EEEcCCCcccCccHHHHHccCCCCC---chHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcC
Q 000432 698 AYVPQSPWILTGNIRENILFGNQYD---SCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQD 774 (1513)
Q Consensus 698 ayv~Q~~~l~~~ti~eNI~fg~~~~---~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~ 774 (1513)
+|++|++.++..|++||+.++.... .++..+.++.+++..+ .......+||||||||++||||++++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKE----------YATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHH----------HhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999864322 1233334444444221 12345678999999999999999999
Q ss_pred CCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000432 775 ADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 775 ~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
|+++||||||++||+.+.+.+. +.+..+. .++|+|++||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIE-ELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 9999999999999999877665 4566553 37999999999998765 999999999999999999988753
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=328.01 Aligned_cols=194 Identities=21% Similarity=0.322 Sum_probs=168.8
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.... ...|+++++
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 789999999964 35999999999999999999999999999999999999999999999999998754 457889999
Q ss_pred EcCCCcccc-CcHhhccCCCC----CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccC
Q 000432 1342 IPQDPTLFD-GTVRGNLDPLV----QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKK 1416 (1513)
Q Consensus 1342 VpQdp~LF~-gTIR~NLdp~~----~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~ 1416 (1513)
+||++.++. .|+++|+.... ..+++++.++++..++.++..+ . ...||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~----~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-------P----VRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC-------C----hhhcCHHHHHHHHHHHHHhcC
Confidence 999998886 59999996421 1345678889999998755422 2 357999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEE
Q 000432 1417 SSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVL 1469 (1513)
Q Consensus 1417 ~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVL 1469 (1513)
|+||+|||||++||+++.+.+.+.|++.. +++|+|+++|+++.+.. .+|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999998764 47899999999999965 4677776
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=332.68 Aligned_cols=198 Identities=25% Similarity=0.460 Sum_probs=164.1
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe------------EEE
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------KAY 699 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------------~ay 699 (1513)
++++|+++.|+.. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4688999999632 257999999999999999999999999999999999999999999999874 599
Q ss_pred EcCCCccc-CccHHHHHccCCC---CCc----hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000432 700 VPQSPWIL-TGNIRENILFGNQ---YDS----CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAV 771 (1513)
Q Consensus 700 v~Q~~~l~-~~ti~eNI~fg~~---~~~----~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal 771 (1513)
|+|++.++ +.|++||+.++.. .+. ++.+++++.+++.+. ......+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK-----------ANKRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhChhhhCCHHHHHHHHHHHHH
Confidence 99999888 5799999987531 111 223334444443221 2234468999999999999999
Q ss_pred hcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHH
Q 000432 772 YQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEEL 842 (1513)
Q Consensus 772 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l 842 (1513)
+.+|+++||||||++||+.+.+.+. +.+..+.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIW-DLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999987776 466666567999999999999865 999999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=333.15 Aligned_cols=196 Identities=22% Similarity=0.376 Sum_probs=161.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC------------eEEE
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG------------TKAY 699 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g------------~~ay 699 (1513)
|+++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 468999999963 4799999999999999999999999999999999999999999999987 3699
Q ss_pred EcCCCcccCc-cHHHHHccCCC---CCc----hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000432 700 VPQSPWILTG-NIRENILFGNQ---YDS----CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAV 771 (1513)
Q Consensus 700 v~Q~~~l~~~-ti~eNI~fg~~---~~~----~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal 771 (1513)
++|++.++.. |++||+.++.. .+. ++.++.++..++.+.. .....+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAA-----------DRLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 9999988864 99999987521 111 1233344444443221 223458999999999999999
Q ss_pred hcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHH
Q 000432 772 YQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-K-DKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEEL 842 (1513)
Q Consensus 772 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~-~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l 842 (1513)
+.+|+++||||||++||+++.+.+.+ .+..+. + ++|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWE-YIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999877764 555543 3 7899999999998765 999999999999999987664
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=335.12 Aligned_cols=191 Identities=27% Similarity=0.381 Sum_probs=160.6
Q ss_pred CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEc-CCCccc-cCcH
Q 000432 1276 PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIP-QDPTLF-DGTV 1353 (1513)
Q Consensus 1276 ~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVp-Qdp~LF-~gTI 1353 (1513)
.++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++... ...+|++++|+| |++.+| .-|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 3599999999999999999999999999999999999999999999999987653 346788999997 667776 5699
Q ss_pred hhccCCC---CCCCHH----HHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCC
Q 000432 1354 RGNLDPL---VQYSDK----QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEAT 1426 (1513)
Q Consensus 1354 R~NLdp~---~~~sde----ei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaT 1426 (1513)
++|+... ...+.+ ++.++++..++.+. +|+.+ .+||||||||++||||++.+|+||+|||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-------LDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-------hcCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 9998532 122333 34455666665433 33333 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEec
Q 000432 1427 ASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYD 1478 (1513)
Q Consensus 1427 SslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~G 1478 (1513)
++||+++.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999988643 7899999999999876 9999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=341.24 Aligned_cols=202 Identities=27% Similarity=0.434 Sum_probs=169.8
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------E
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------K 697 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------~ 697 (1513)
.++++|+++.|+. ..+++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|. +
T Consensus 5 ~l~~~~l~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPD-AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCC-CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 5899999999963 2357999999999999999999999999999999999999999999999883 5
Q ss_pred EEEcCCC--cccCccHHHHHccCCC---CCc----hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHH
Q 000432 698 AYVPQSP--WILTGNIRENILFGNQ---YDS----CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIA 768 (1513)
Q Consensus 698 ayv~Q~~--~l~~~ti~eNI~fg~~---~~~----~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lA 768 (1513)
+|++|+| .+++.|++|||.++.. .++ ++.+++++.++|.+.++ .....||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLN-----------REPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHH
Confidence 8999998 4667899999998632 122 22344444445543333 33458999999999999
Q ss_pred HHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000432 769 RAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 769 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~--~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
||++.+|+++||||||++||+.+.+.+++ ++..+.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLE-TVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999887764 5655543 7899999999998888999999999999999999888754
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=323.14 Aligned_cols=213 Identities=25% Similarity=0.405 Sum_probs=185.6
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHh-hhceE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL-RSRLG 1340 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~L-R~~is 1340 (1513)
.+.+|++.+|..- .+++||||++++||.+|++||+||||||+++++.|+|+|++|+|.++|.||..++.+.. |..|+
T Consensus 5 L~v~~l~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 6789999999753 49999999999999999999999999999999999999999999999999999999984 66688
Q ss_pred EEcCCCccccC-cHhhccCCCC-------------CC--C----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCC
Q 000432 1341 IIPQDPTLFDG-TVRGNLDPLV-------------QY--S----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWS 1400 (1513)
Q Consensus 1341 iVpQdp~LF~g-TIR~NLdp~~-------------~~--s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLS 1400 (1513)
--+|.+-+|++ |+-||+.-.. .+ . .|+-.+.|+.++|.+. -.+...+||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~-----------a~~~A~~Ls 151 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGEL-----------ADRPAGNLS 151 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchh-----------hcchhhcCC
Confidence 88999999977 9999984210 01 1 2344556666666544 334456899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-cCEEEEEeCCEEeEe
Q 000432 1401 VGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEY 1477 (1513)
Q Consensus 1401 gGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~ 1477 (1513)
+||+.|+-|||||..+|++|+||||.|++.++-...+.+.|++..+ +.|+++|-||++.|++ ||||+||+.|+++..
T Consensus 152 yG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAe 231 (250)
T COG0411 152 YGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE 231 (250)
T ss_pred hhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCccc
Confidence 9999999999999999999999999999999998999999988874 4899999999999998 999999999999999
Q ss_pred cChhHHHhcC
Q 000432 1478 DSPTKLLERE 1487 (1513)
Q Consensus 1478 Gtp~eLl~~~ 1487 (1513)
|+|+|..+++
T Consensus 232 G~P~eV~~dp 241 (250)
T COG0411 232 GTPEEVRNNP 241 (250)
T ss_pred CCHHHHhcCH
Confidence 9999999874
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=324.76 Aligned_cols=225 Identities=24% Similarity=0.389 Sum_probs=194.4
Q ss_pred eEEEEEEEEEEcCCC----------------------CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCc
Q 000432 1261 TISFHNLQIRYAEHL----------------------PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMG 1318 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~----------------------~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G 1318 (1513)
.|+++||+.-+..+. ..-++|+||+|+.||..-|.|-||||||||++++-|++||++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 588888887775431 1247899999999999999999999999999999999999999
Q ss_pred EEEEcCeeCCCCChHHhh----hceEEEcCCCcccc-CcHhhccCCCCC---CC----HHHHHHHHHHcCCcHHHHhhhc
Q 000432 1319 SIIIDNVDITKIGLHDLR----SRLGIIPQDPTLFD-GTVRGNLDPLVQ---YS----DKQVWEALDKCQLGDLVRAKEE 1386 (1513)
Q Consensus 1319 ~I~IDGvdI~~i~l~~LR----~~isiVpQdp~LF~-gTIR~NLdp~~~---~s----deei~~aL~~~~l~~~I~~lp~ 1386 (1513)
+|++||.||..++..+|| +++++|+|.--||. -||-+|..++-+ .+ .+...++|+.+||.+|-.+.|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 999999999999998874 58999999999885 599999976522 22 3457789999999999888775
Q ss_pred cccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-c
Q 000432 1387 KLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-S 1463 (1513)
Q Consensus 1387 gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~ 1463 (1513)
.||||+|||+.|||||..+|+||+||||.|+|||--...+|+-+.+.- -.+|+++|||+|+.... -
T Consensus 164 -----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 579999999999999999999999999999999999999998876543 36899999999998655 9
Q ss_pred CEEEEEeCCEEeEecChhHHHhcCChHH-HHHHH
Q 000432 1464 DLVLVLSDGRIAEYDSPTKLLEREDSFF-SQLIK 1496 (1513)
Q Consensus 1464 DrIlVLd~G~IvE~Gtp~eLl~~~~~~f-~~l~~ 1496 (1513)
|||..|.+|+|+..|||+|.+.++..-| +..++
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~ 266 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVR 266 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHHHHHh
Confidence 9999999999999999999999875444 33443
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=338.44 Aligned_cols=206 Identities=25% Similarity=0.411 Sum_probs=169.9
Q ss_pred cceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCcc-----CCCcEEEECC--------
Q 000432 629 EFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQ-----KMAGTVKISG-------- 695 (1513)
Q Consensus 629 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~-----~~~G~i~~~g-------- 695 (1513)
...++++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|.++ |++|+|.++|
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 346899999999963 479999999999999999999999999999999999986 4799999876
Q ss_pred -------eEEEEcCCCcccCccHHHHHccCCC----CCchH----HHHHHHHHhcHHHHhhccCCCCccccCCCCCCChH
Q 000432 696 -------TKAYVPQSPWILTGNIRENILFGNQ----YDSCK----YDRTVEACALVKDFELFASGDLTEIGERGINMSGG 760 (1513)
Q Consensus 696 -------~~ayv~Q~~~l~~~ti~eNI~fg~~----~~~~~----~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGG 760 (1513)
.++|++|++.++..|++||+.++.. .+.+. .+++++..++..++ ...+.+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHH
Confidence 2689999999999999999988632 22222 22333333332222 23456677899999
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecCh
Q 000432 761 QKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRF 839 (1513)
Q Consensus 761 QkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~ 839 (1513)
||||++||||++++|+++||||||++||+.+.+.+. +.+..+.+++|+|++||+++.+. .||+|++|++|++++.|+.
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 239 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIE-ELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNT 239 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999977775 45665556789999999999876 4999999999999999999
Q ss_pred HHHHhc
Q 000432 840 EELLKQ 845 (1513)
Q Consensus 840 ~~l~~~ 845 (1513)
+++.+.
T Consensus 240 ~~~~~~ 245 (260)
T PRK10744 240 DTIFTK 245 (260)
T ss_pred HHHHhC
Confidence 988653
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=351.05 Aligned_cols=206 Identities=24% Similarity=0.392 Sum_probs=166.9
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC---------------
Q 000432 632 VEVVNGKFSWNPES-SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--------------- 695 (1513)
Q Consensus 632 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g--------------- 695 (1513)
|+++|++++|+... +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 68999999996321 35799999999999999999999999999999999999999999999987
Q ss_pred -eEEEEcCCCcccC-ccHHHHHccCCC---CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHH
Q 000432 696 -TKAYVPQSPWILT-GNIRENILFGNQ---YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARA 770 (1513)
Q Consensus 696 -~~ayv~Q~~~l~~-~ti~eNI~fg~~---~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARa 770 (1513)
.++||+|++.++. .|++||+.++.. .+.+.+++.+. +-++.+ |..........+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVT-----ELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 2799999999886 699999988632 22222211111 111111 12222334567899999999999999
Q ss_pred HhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000432 771 VYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 771 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
++++|+++||||||++||+.+.+.+.+ .+..+. .++|+|++||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~-~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILE-LLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999887764 565543 37899999999998765 999999999999999999998765
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=336.48 Aligned_cols=201 Identities=32% Similarity=0.457 Sum_probs=163.0
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe---------------
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT--------------- 696 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~--------------- 696 (1513)
++++|++++|+. ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468899999963 257999999999999999999999999999999999999999999999872
Q ss_pred -EEEEcCCCcccC-ccHHHHHccCCCC------------CchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHH
Q 000432 697 -KAYVPQSPWILT-GNIRENILFGNQY------------DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQK 762 (1513)
Q Consensus 697 -~ayv~Q~~~l~~-~ti~eNI~fg~~~------------~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQk 762 (1513)
++|++|++.++. .|++||+.++... .++..+++.+. ++.+ |........+.+||||||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~--~l~~~~~~~~~~LS~G~~ 150 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAA------LERV--GLLDKAYQRADQLSGGQQ 150 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHH------HHHc--CChhhhCCCcccCCHHHH
Confidence 689999998876 6999999875321 11111111111 1111 122234556779999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecCh
Q 000432 763 QRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRF 839 (1513)
Q Consensus 763 qRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~ 839 (1513)
||++||||++.+|+++||||||++||+++.+.+.+ .+..+. .++|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 151 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 229 (241)
T cd03256 151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMD-LLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPP 229 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCH
Confidence 99999999999999999999999999999887765 565543 3799999999999987 5999999999999999999
Q ss_pred HHHH
Q 000432 840 EELL 843 (1513)
Q Consensus 840 ~~l~ 843 (1513)
+++.
T Consensus 230 ~~~~ 233 (241)
T cd03256 230 AELT 233 (241)
T ss_pred HHhh
Confidence 8863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=298.36 Aligned_cols=197 Identities=27% Similarity=0.431 Sum_probs=175.5
Q ss_pred EEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEcCCCccc
Q 000432 1270 RYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLF 1349 (1513)
Q Consensus 1270 ~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~LF 1349 (1513)
+|.....++|+++||++.+||.++|.||||||||||++.+.-+..|++|.++..|.|+++++++.+|++++|+-|.|.||
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 46555667999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHhhccC-CC----CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000432 1350 DGTVRGNLD-PL----VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDE 1424 (1513)
Q Consensus 1350 ~gTIR~NLd-p~----~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDE 1424 (1513)
.+||.+|+- |. ...+...-.+-|+++++.+.+ +..+..+||||||||++|+|-|---|+||+|||
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~----------L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSI----------LTKNITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred ccchhhccccchHHhccCCChHHHHHHHHHcCCchhh----------hcchhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 999999995 32 234445566777888876654 233456799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhh-HhhcCEEEEEeCCEEeE
Q 000432 1425 ATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHT-VIDSDLVLVLSDGRIAE 1476 (1513)
Q Consensus 1425 aTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~t-i~~~DrIlVLd~G~IvE 1476 (1513)
+||+||..+.+.|.+.|.+.+ ++..++-|||+-.. ++.+||++-+..|++-|
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 999999999999999999888 57899999999988 88899999999998744
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=319.27 Aligned_cols=166 Identities=35% Similarity=0.652 Sum_probs=151.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe------------EEE
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------KAY 699 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------------~ay 699 (1513)
|+++|++++|+.. ..++++|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.++|. ++|
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4689999999642 247999999999999999999999999999999999999999999999984 699
Q ss_pred EcCCCcccCccHHHHHccCCCCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEE
Q 000432 700 VPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYL 779 (1513)
Q Consensus 700 v~Q~~~l~~~ti~eNI~fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~ill 779 (1513)
++|+|++++.|++||| ..+||||||||++||||++++|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 46899999999999999999999999
Q ss_pred eeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCeEEEec
Q 000432 780 LDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAG 837 (1513)
Q Consensus 780 LDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g 837 (1513)
|||||++||+++.+.+++ .+..+.+++|+|++||+++.++.||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLS-LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999777764 565555689999999999999889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=332.37 Aligned_cols=190 Identities=31% Similarity=0.455 Sum_probs=155.8
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC---------------
Q 000432 632 VEVVNGKFSWNPES-SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--------------- 695 (1513)
Q Consensus 632 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g--------------- 695 (1513)
++++|++++|+... .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46889999996421 14799999999999999999999999999999999999999999999876
Q ss_pred --eEEEEcCCCcccCc-cHHHHHccCCCCC---c----hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHH
Q 000432 696 --TKAYVPQSPWILTG-NIRENILFGNQYD---S----CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRI 765 (1513)
Q Consensus 696 --~~ayv~Q~~~l~~~-ti~eNI~fg~~~~---~----~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi 765 (1513)
.++|++|++.++.. |++||+.++..+. . ++.++.++..++ .........+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGL-----------GDRLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-----------chhhhcChhhcCHHHHHHH
Confidence 26999999998876 9999999864321 1 112222222222 2233455678999999999
Q ss_pred HHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCCCccccCCEEEEEeCCeE
Q 000432 766 QIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DKSVLYVTHQVEFLPAADIILVMENGRI 833 (1513)
Q Consensus 766 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~--~~TvilvtH~~~~l~~~d~i~vl~~G~i 833 (1513)
+||||++.+|+++||||||++||+++.+.+. +.+..+.+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVM-ELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999977775 45665543 7999999999998878999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=332.55 Aligned_cols=203 Identities=25% Similarity=0.428 Sum_probs=167.1
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe------------EEE
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------KAY 699 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------------~ay 699 (1513)
++++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|.++|++|+|.++|. ++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 678999999963 47999999999999999999999999999999999999999999999873 689
Q ss_pred EcCCCcc-cCccHHHHHccCCCC---CchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000432 700 VPQSPWI-LTGNIRENILFGNQY---DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDA 775 (1513)
Q Consensus 700 v~Q~~~l-~~~ti~eNI~fg~~~---~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~ 775 (1513)
++|++.+ +..|++||+.++... ..+...+.+. +-++.+ |.......+..+||||||||++||||++++|
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIA-----ALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHH-----HHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999987 467999999875321 1111111111 112222 3333455667799999999999999999999
Q ss_pred CEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000432 776 DIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 776 ~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
+++||||||++||+.+.+.+.+ .+..+. +++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVA-HVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHH-HHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 9999999999999999887764 565554 47999999999999888999999999999999999888754
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=324.86 Aligned_cols=196 Identities=25% Similarity=0.370 Sum_probs=172.2
Q ss_pred eEEEEEEEEEEcCCC-------CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChH
Q 000432 1261 TISFHNLQIRYAEHL-------PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~-------~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~ 1333 (1513)
-++.+|++..|+... -.+++||||+|++||.+||||.|||||||+.++|.|+++|++|+|+++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 478999999996432 25899999999999999999999999999999999999999999999999988766
Q ss_pred HhhhceEEEcCCCccccCcHhhccCCCCCCCHHHHHHHHHHcCCcH-HHHhhhccccchhccCCCCCChhHHHHHHHHHH
Q 000432 1334 DLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGD-LVRAKEEKLDSTVAENGENWSVGQRQLFCLGRT 1412 (1513)
Q Consensus 1334 ~LR~~isiVpQdp~LF~gTIR~NLdp~~~~sdeei~~aL~~~~l~~-~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARA 1412 (1513)
.+-.++++.+.|+.+++.+ +..+.| ..||||||||++||||
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IARA 123 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIARA 123 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHHH
Confidence 1223567999999999876 444444 3589999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcCCh
Q 000432 1413 LLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDS 1489 (1513)
Q Consensus 1413 LLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~~~ 1489 (1513)
|.-+|+++|+|||||+||.-..++|.+.+++.- .+-|.++|+|+++.+.. ||||.||..|+|||.|+-+++.+++.-
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 999999999999999999999999999887643 37899999999999998 999999999999999999999998877
Q ss_pred HHHHHHH
Q 000432 1490 FFSQLIK 1496 (1513)
Q Consensus 1490 ~f~~l~~ 1496 (1513)
.|-+..-
T Consensus 204 pYTk~Ll 210 (268)
T COG4608 204 PYTKALL 210 (268)
T ss_pred HHHHHHH
Confidence 7765443
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=368.43 Aligned_cols=212 Identities=19% Similarity=0.229 Sum_probs=184.9
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++|++++|+.. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+..++|++++
T Consensus 3 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 38999999999643 4999999999999999999999999999999999999999999999999988777788888999
Q ss_pred EEcCCCcc--c-------cCcHhhccCCCCCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHH
Q 000432 1341 IIPQDPTL--F-------DGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGR 1411 (1513)
Q Consensus 1341 iVpQdp~L--F-------~gTIR~NLdp~~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LAR 1411 (1513)
++||+|.+ + .-|+++|+... ...++++.++++..++.+... .. ...||||||||++|||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LSgG~~qrv~la~ 148 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGITALLD-------RR----FKYLSTGETRKTLLCQ 148 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCHhhhh-------CC----cccCCHHHHHHHHHHH
Confidence 99999753 2 45899998642 123456788888888765432 22 3469999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhc
Q 000432 1412 TLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1412 ALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~ 1486 (1513)
||+++|++|+|||||++||+++.+.+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++|++++.|++++++++
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 9999999999999999999999999999998764 36899999999999877 999999999999999999998764
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=331.43 Aligned_cols=202 Identities=29% Similarity=0.475 Sum_probs=163.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe--------------E
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT--------------K 697 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~--------------~ 697 (1513)
++++|++++|+. .++|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.++|. +
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 468999999963 47999999999999999999999999999999999999999999999872 6
Q ss_pred EEEcCCCcccCc-cHHHHHccCCCCC-chHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000432 698 AYVPQSPWILTG-NIRENILFGNQYD-SCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDA 775 (1513)
Q Consensus 698 ayv~Q~~~l~~~-ti~eNI~fg~~~~-~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~ 775 (1513)
+|++|++.++.. |++||+.++.... ....++.++ .+.+.+..++ .....+..+||||||||++||||+..+|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~--~~l~~~~~l~----~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLE--RVYELFPRLK----ERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHH--HHHHHHHhhh----hhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999988876 9999998875432 111111111 1111111121 2234566789999999999999999999
Q ss_pred CEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHH
Q 000432 776 DIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELL 843 (1513)
Q Consensus 776 ~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~ 843 (1513)
+++||||||++||+++.+.+.+ .++.+. +++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFE-AIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999777764 565543 57899999999998755 9999999999999999988765
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=377.43 Aligned_cols=216 Identities=21% Similarity=0.324 Sum_probs=190.3
Q ss_pred ceEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhce
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339 (1513)
Q Consensus 1260 g~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~i 1339 (1513)
..|+++|++++|+++...+|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.++|.|+.+ .....|+++
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 3699999999996433469999999999999999999999999999999999999999999999999975 567789999
Q ss_pred EEEcCCCccccC-cHhhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHH
Q 000432 1340 GIIPQDPTLFDG-TVRGNLDPL---VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGR 1411 (1513)
Q Consensus 1340 siVpQdp~LF~g-TIR~NLdp~---~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LAR 1411 (1513)
|++||++.+|+. |++|||... ...+ ++++.+.++.+++.+... . ...+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~-------~----~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN-------E----EAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-------C----ChhhCCHHHHHHHHHHH
Confidence 999999999975 999999642 1122 345777888887765432 2 33579999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHHhcC
Q 000432 1412 TLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE 1487 (1513)
Q Consensus 1412 ALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl~~~ 1487 (1513)
||+.+|+||+||||||+||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|++++|.++-
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 999999999999999999999999999999998778999999999999875 9999999999999999999997653
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=342.13 Aligned_cols=197 Identities=30% Similarity=0.419 Sum_probs=161.0
Q ss_pred EEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC-----------------e
Q 000432 634 VVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG-----------------T 696 (1513)
Q Consensus 634 ~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g-----------------~ 696 (1513)
++|+++.|+ ..++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 27 ~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 27 KEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 446666664 24689999999999999999999999999999999999999999999876 3
Q ss_pred EEEEcCCCcccC-ccHHHHHccCCC---CCc----hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHH
Q 000432 697 KAYVPQSPWILT-GNIRENILFGNQ---YDS----CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIA 768 (1513)
Q Consensus 697 ~ayv~Q~~~l~~-~ti~eNI~fg~~---~~~----~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lA 768 (1513)
++|++|++.++. .|++||+.++.. .+. ++..++++.+++.+.. .....+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWE-----------HKYPDELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hCCcccCCHHHHHHHHHH
Confidence 699999999885 699999987532 111 2233344444443322 333458999999999999
Q ss_pred HHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHHHHhc
Q 000432 769 RAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 769 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
||++.+|+++||||||++||+.+.+.+.+ ++..+. .++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQD-ELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999877764 565543 3799999999999875 4999999999999999999998754
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=368.72 Aligned_cols=219 Identities=21% Similarity=0.385 Sum_probs=183.0
Q ss_pred eEEEEEEEEEEcCC--CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEEcCeeCCCCChH
Q 000432 1261 TISFHNLQIRYAEH--LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP-----TMGSIIIDNVDITKIGLH 1333 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~--~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep-----~~G~I~IDGvdI~~i~l~ 1333 (1513)
.|+++|++++|+.+ ..++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 58999999999642 23699999999999999999999999999999999999987 799999999999887654
Q ss_pred H---hh-hceEEEcCCCc--ccc-CcHhhccCC----CCCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCC
Q 000432 1334 D---LR-SRLGIIPQDPT--LFD-GTVRGNLDP----LVQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGEN 1398 (1513)
Q Consensus 1334 ~---LR-~~isiVpQdp~--LF~-gTIR~NLdp----~~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~n 1398 (1513)
+ .| +++++|||+|. ++. -|+++|+.. ....+ ++++.++++.+++.+... -+|. ...+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----~~~~----~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK----RLTD----YPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH----HHhh----CCcc
Confidence 4 33 57999999985 443 489998752 11122 346778888888864211 1122 2357
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-cCEEEEEeCCEEe
Q 000432 1399 WSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIA 1475 (1513)
Q Consensus 1399 LSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~Iv 1475 (1513)
||||||||++|||||+.+|++|+||||||+||+++.+.+.+.|++.. .++|||+|+|+++.+.+ ||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998864 37899999999999876 9999999999999
Q ss_pred EecChhHHHhcC
Q 000432 1476 EYDSPTKLLERE 1487 (1513)
Q Consensus 1476 E~Gtp~eLl~~~ 1487 (1513)
+.|+++++++.+
T Consensus 237 ~~g~~~~~~~~~ 248 (529)
T PRK15134 237 EQNRAATLFSAP 248 (529)
T ss_pred EeCCHHHHhhCC
Confidence 999999997654
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=326.76 Aligned_cols=191 Identities=24% Similarity=0.375 Sum_probs=160.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-----------EEEE
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-----------KAYV 700 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-----------~ayv 700 (1513)
++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+.+|++|+|.++|. ++||
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 468999999953 57999999999999999999999999999999999999999999999873 6899
Q ss_pred cCCCccc-CccHHHHHccCCC---CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000432 701 PQSPWIL-TGNIRENILFGNQ---YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDAD 776 (1513)
Q Consensus 701 ~Q~~~l~-~~ti~eNI~fg~~---~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~ 776 (1513)
+|++.++ +.|++||+.++.. .++++.++.++..++.+.. ......||||||||++||||++.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSA-----------KKKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-----------hhhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999887 5799999987532 2333444455555443322 33456899999999999999999999
Q ss_pred EEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEec
Q 000432 777 IYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAG 837 (1513)
Q Consensus 777 illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g 837 (1513)
++||||||++||+.+.+.+.+ .+.... +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRE-LILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999877764 555543 58999999999999865 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=332.33 Aligned_cols=202 Identities=25% Similarity=0.398 Sum_probs=164.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe--------------E
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT--------------K 697 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~--------------~ 697 (1513)
++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++|. +
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 468899999963 46999999999999999999999999999999999999999999999873 6
Q ss_pred EEEcCCCcccCc-cHHHHHccCCCC---CchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhc
Q 000432 698 AYVPQSPWILTG-NIRENILFGNQY---DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQ 773 (1513)
Q Consensus 698 ayv~Q~~~l~~~-ti~eNI~fg~~~---~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~ 773 (1513)
+|++|++.++.+ |++||+.++.+. ..+...+.+ .+-++.+ |..........+||||||||++||||+..
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKL-----EELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 899999988876 999999875421 111111111 1112222 23334456667899999999999999999
Q ss_pred CCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000432 774 DADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLK 844 (1513)
Q Consensus 774 ~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~ 844 (1513)
+|+++||||||++||+.+.+.+.+ .++.+. +++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQK-IIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999777764 555543 47899999999987654 99999999999999999888754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=337.24 Aligned_cols=204 Identities=22% Similarity=0.379 Sum_probs=167.7
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCcc--C---CCcEEEECCe---------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQ--K---MAGTVKISGT--------- 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~--~---~~G~i~~~g~--------- 696 (1513)
.++++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5899999999963 479999999999999999999999999999999999987 3 5899988763
Q ss_pred ------EEEEcCCCcccCccHHHHHccCCCC----CchHHH----HHHHHHhcHHHHhhccCCCCccccCCCCCCChHHH
Q 000432 697 ------KAYVPQSPWILTGNIRENILFGNQY----DSCKYD----RTVEACALVKDFELFASGDLTEIGERGINMSGGQK 762 (1513)
Q Consensus 697 ------~ayv~Q~~~l~~~ti~eNI~fg~~~----~~~~~~----~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQk 762 (1513)
++|++|++.+++.|++||+.|+... +++..+ ++++..++.+.+ .+.....+.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHH
Confidence 5899999999999999999886422 111111 222222222211 1234567789999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHH
Q 000432 763 QRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEE 841 (1513)
Q Consensus 763 qRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~ 841 (1513)
||++||||++++|+++||||||++||+++.+.+. +++..+.+++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIE-ELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999977664 56766666899999999999876 499999999999999999999
Q ss_pred HHhc
Q 000432 842 LLKQ 845 (1513)
Q Consensus 842 l~~~ 845 (1513)
+.++
T Consensus 241 ~~~~ 244 (259)
T PRK14274 241 MFSN 244 (259)
T ss_pred HhhC
Confidence 8654
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=324.02 Aligned_cols=193 Identities=22% Similarity=0.288 Sum_probs=166.0
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. ....+|+++++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 789999999964 359999999999999999999999999999999999999999999999999875 34568899999
Q ss_pred EcCCCccc-cCcHhhccCCCC--CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCC
Q 000432 1342 IPQDPTLF-DGTVRGNLDPLV--QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSS 1418 (1513)
Q Consensus 1342 VpQdp~LF-~gTIR~NLdp~~--~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ 1418 (1513)
+||++.++ ..|+++|+.... ...++++.++++..++.+.. |.++ .+||+|||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLI-------DYPC----GLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhh-------hCCh----hhcCHHHHHHHHHHHHHhcCCC
Confidence 99999987 579999996421 12344677788877765432 3333 3699999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhcCEEEE
Q 000432 1419 ILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVIDSDLVLV 1468 (1513)
Q Consensus 1419 ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~DrIlV 1468 (1513)
+|+|||||+++|..+.+.+.+.|++.. +++|+|+++|+.+.+.+||.-.+
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999999753 57899999999999999986553
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=326.56 Aligned_cols=195 Identities=22% Similarity=0.280 Sum_probs=168.0
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
.|+++|++++|++. ++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNEE--PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCCc--eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 59999999999643 599999999999999999999999999999999999999999999999998752 4466899
Q ss_pred EEcCCCccccC-cHhhccCCC----CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHcc
Q 000432 1341 IIPQDPTLFDG-TVRGNLDPL----VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLK 1415 (1513)
Q Consensus 1341 iVpQdp~LF~g-TIR~NLdp~----~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr 1415 (1513)
++||+|.+|.+ |+++|+... +...++.+.++++..++.+. +++.+ .+||+|||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-------EDTLV----RQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-------ccCCh----hhCCHHHHHHHHHHHHHhc
Confidence 99999999987 999998532 22234456677877776433 33333 5699999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeC
Q 000432 1416 KSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSD 1471 (1513)
Q Consensus 1416 ~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~ 1471 (1513)
+|+||+|||||++||.++.+.+.+.+++.. +++|+|+++|+++.+.+ ||+|++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998653 47899999999999976 899999975
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=338.49 Aligned_cols=200 Identities=29% Similarity=0.476 Sum_probs=165.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe--------------E
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT--------------K 697 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~--------------~ 697 (1513)
++++|++++|+. ..++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 678999999953 246999999999999999999999999999999999999999999998872 5
Q ss_pred EEEcCCCc--ccCccHHHHHccCCC---CCchH----HHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHH
Q 000432 698 AYVPQSPW--ILTGNIRENILFGNQ---YDSCK----YDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIA 768 (1513)
Q Consensus 698 ayv~Q~~~--l~~~ti~eNI~fg~~---~~~~~----~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lA 768 (1513)
+||+|+|. +++.|++|||.|+.. .+.+. .+++++.+++. .........||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLE-----------KYRHRSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-----------HHhcCCcccCCHHHHHHHHHH
Confidence 89999986 567899999998642 12222 22233333332 223445678999999999999
Q ss_pred HHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000432 769 RAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 769 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
||++++|+++||||||++||+.+...+.+ .++.+. +|+|+|++||+++.++.||+|++|++|++++.|+.+++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLE-RIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999877765 455443 48999999999999888999999999999999999887643
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=351.56 Aligned_cols=202 Identities=26% Similarity=0.405 Sum_probs=167.5
Q ss_pred ceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-----------EE
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-----------KA 698 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-----------~a 698 (1513)
..++++|++++|+. .++|+|+||++++|++++|+|||||||||||++|.|+.+|++|+|.++|. ++
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 46999999999963 46999999999999999999999999999999999999999999999984 69
Q ss_pred EEcCCCcccCc-cHHHHHccCCC---CCchH----HHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHH
Q 000432 699 YVPQSPWILTG-NIRENILFGNQ---YDSCK----YDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARA 770 (1513)
Q Consensus 699 yv~Q~~~l~~~-ti~eNI~fg~~---~~~~~----~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARa 770 (1513)
||+|++-+|.. ||.|||.|+.. .+... ..+.++..++.+ .......+|||||||||+||||
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~-----------~~~~~~~~LSgGq~QRVaLARA 163 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE-----------FAKRKPHQLSGGQRQRVALARS 163 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHHHH
Confidence 99999999965 99999999743 22222 222233333322 1233456899999999999999
Q ss_pred HhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCcc-ccCCEEEEEeCCeEEEecChHHHHhcC
Q 000432 771 VYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFL-PAADIILVMENGRIAQAGRFEELLKQN 846 (1513)
Q Consensus 771 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l-~~~d~i~vl~~G~i~~~g~~~~l~~~~ 846 (1513)
++.+|+++|||||||+||+...+.+.+. +..+. .+.|+|+|||+.+.+ ..||+|++|++|++++.|+++|+..+.
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~-l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLE-VVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 9999999999999999999998777543 44333 379999999999985 559999999999999999999998653
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=337.98 Aligned_cols=205 Identities=22% Similarity=0.396 Sum_probs=169.5
Q ss_pred cceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccC-----CCcEEEECC--------
Q 000432 629 EFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQK-----MAGTVKISG-------- 695 (1513)
Q Consensus 629 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~-----~~G~i~~~g-------- 695 (1513)
...|+++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999963 4799999999999999999999999999999999999974 899999887
Q ss_pred -------eEEEEcCCCcccCccHHHHHccCCCC-----Cc----hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCCh
Q 000432 696 -------TKAYVPQSPWILTGNIRENILFGNQY-----DS----CKYDRTVEACALVKDFELFASGDLTEIGERGINMSG 759 (1513)
Q Consensus 696 -------~~ayv~Q~~~l~~~ti~eNI~fg~~~-----~~----~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSG 759 (1513)
.++|++|+|.++..|++||+.|+..+ .. ++.++.++.+++.+++. +.....+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 25899999999988999999876321 11 11233333333322211 234566788999
Q ss_pred HHHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecC
Q 000432 760 GQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGR 838 (1513)
Q Consensus 760 GQkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~ 838 (1513)
|||||++||||++.+|+++||||||++||+.+.+.+. +++..+.+++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVE-ELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999977665 567666567899999999999855 99999999999999999
Q ss_pred hHHHHh
Q 000432 839 FEELLK 844 (1513)
Q Consensus 839 ~~~l~~ 844 (1513)
.+++..
T Consensus 246 ~~~~~~ 251 (267)
T PRK14235 246 TEKMFT 251 (267)
T ss_pred HHHHHh
Confidence 988864
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=329.20 Aligned_cols=194 Identities=22% Similarity=0.379 Sum_probs=158.6
Q ss_pred EEEEeEEEEeCCCCC-CCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC------------eEE
Q 000432 632 VEVVNGKFSWNPESS-SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG------------TKA 698 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g------------~~a 698 (1513)
++++|++++|+.... .++|+|+||++++|++++|+|+||||||||+++|.|+++|++|+|.++| .++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 678999999964211 2699999999999999999999999999999999999999999999987 369
Q ss_pred EEcCCCcccCc-cHHHHHccCCC---CCc----hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHH
Q 000432 699 YVPQSPWILTG-NIRENILFGNQ---YDS----CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARA 770 (1513)
Q Consensus 699 yv~Q~~~l~~~-ti~eNI~fg~~---~~~----~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARa 770 (1513)
|++|++.++.. |++||+.+... .+. ++..+.++..++ .........+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGM-----------EELLDRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------HHHHhhhhhhcCHHHHHHHHHHHH
Confidence 99999998875 99999976432 111 122223333332 223445677899999999999999
Q ss_pred HhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEec
Q 000432 771 VYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAG 837 (1513)
Q Consensus 771 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g 837 (1513)
++.+|+++||||||++||+.+.+.+.+ .+..+. +++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALRE-FIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999777754 565543 47999999999998765 9999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=367.30 Aligned_cols=207 Identities=24% Similarity=0.349 Sum_probs=177.1
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCCh-HHhhhce
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGL-HDLRSRL 1339 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l-~~LR~~i 1339 (1513)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+. +.+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 359999999999999999999999999999999999999999999999999976543 3467889
Q ss_pred EEEcCCCccccC-cHhhccCCCC-----C-CC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHH
Q 000432 1340 GIIPQDPTLFDG-TVRGNLDPLV-----Q-YS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFC 1408 (1513)
Q Consensus 1340 siVpQdp~LF~g-TIR~NLdp~~-----~-~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~ 1408 (1513)
+||||+|.+|.+ |+++|+.... . .+ ++++.++++.+++.+. .+.. ..+||||||||++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~----~~~LSgGq~qrv~ 150 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-------PDTP----LKYLSIGQRQMVE 150 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-------cCCc----hhhCCHHHHHHHH
Confidence 999999998875 9999997421 1 12 2356677777776422 2333 3579999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecCh
Q 000432 1409 LGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSP 1480 (1513)
Q Consensus 1409 LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp 1480 (1513)
|||||+++|+||||||||++||+++.+.+.+.|++.. +++|+|+|+|+++.+.. ||+|++|++|++++.+++
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999998764 47899999999999876 999999999999987654
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=340.59 Aligned_cols=203 Identities=25% Similarity=0.448 Sum_probs=165.8
Q ss_pred eEEEEeEEEEeCCCC--CCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe------------
Q 000432 631 EVEVVNGKFSWNPES--SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------ 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------------ 696 (1513)
.|+++|++++|++.. .+++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999996321 247999999999999999999999999999999999999999999999873
Q ss_pred -----EEEEcCCC--cccCccHHHHHccCCC---CCchH----HHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHH
Q 000432 697 -----KAYVPQSP--WILTGNIRENILFGNQ---YDSCK----YDRTVEACALVKDFELFASGDLTEIGERGINMSGGQK 762 (1513)
Q Consensus 697 -----~ayv~Q~~--~l~~~ti~eNI~fg~~---~~~~~----~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQk 762 (1513)
++|++|+| .+++.|++|||.|+.. .+.+. .++.++.+++..+ .......+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSED----------LISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhhCCcccCCHHHH
Confidence 58999998 5778899999987632 22211 2222233332211 12345678999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChH
Q 000432 763 QRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFE 840 (1513)
Q Consensus 763 qRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~ 840 (1513)
||++||||+..+|+++||||||++||+.+.+.+. +.+..+. +++|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~-~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMM-QLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999977765 4666553 4799999999999875 59999999999999999999
Q ss_pred HHHh
Q 000432 841 ELLK 844 (1513)
Q Consensus 841 ~l~~ 844 (1513)
++.+
T Consensus 231 ~~~~ 234 (287)
T PRK13641 231 EIFS 234 (287)
T ss_pred HHhc
Confidence 8764
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=372.02 Aligned_cols=216 Identities=24% Similarity=0.366 Sum_probs=146.6
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHh------ccCC----C-----------CCcE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIF------RIVE----P-----------TMGS 1319 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~------rl~e----p-----------~~G~ 1319 (1513)
.++++|++. ..|+|+|++|++||.+||+|++|||||||++-.+ ++.+ | -.--
T Consensus 612 ~l~l~~~~~-------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (924)
T TIGR00630 612 FLTLKGARE-------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKV 684 (924)
T ss_pred eEEEEeCcc-------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCce
Confidence 588999863 2599999999999999999999999999998332 1221 1 1123
Q ss_pred EEEcCeeCCCC---------C-hHHhhhceEEEcC------CCccccC--------------cHhhccCCC---------
Q 000432 1320 IIIDNVDITKI---------G-LHDLRSRLGIIPQ------DPTLFDG--------------TVRGNLDPL--------- 1360 (1513)
Q Consensus 1320 I~IDGvdI~~i---------~-l~~LR~~isiVpQ------dp~LF~g--------------TIR~NLdp~--------- 1360 (1513)
|.||-.+|..- + .+.+|.-++=.|+ .+-.|+- .+.-++.+.
T Consensus 685 v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 764 (924)
T TIGR00630 685 IHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEV 764 (924)
T ss_pred EEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCC
Confidence 55555555421 1 1235666655554 2334431 121111110
Q ss_pred ---CCCCHH-----------------HHHHHHHHc----CCcHHHHhh-hccccc-hhccCCCCCChhHHHHHHHHHHHc
Q 000432 1361 ---VQYSDK-----------------QVWEALDKC----QLGDLVRAK-EEKLDS-TVAENGENWSVGQRQLFCLGRTLL 1414 (1513)
Q Consensus 1361 ---~~~sde-----------------ei~~aL~~~----~l~~~I~~l-p~gLdt-~V~e~G~nLSgGQRQrl~LARALL 1414 (1513)
..+.+| .+.++++-. .+.+..+.+ .-||+. ..++....||||||||++|||||.
T Consensus 765 C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~ 844 (924)
T TIGR00630 765 CKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELS 844 (924)
T ss_pred cCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHh
Confidence 011111 011111111 011111111 015554 367778899999999999999999
Q ss_pred c---CCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhcCEEEEE------eCCEEeEecChhHH
Q 000432 1415 K---KSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVIDSDLVLVL------SDGRIAEYDSPTKL 1483 (1513)
Q Consensus 1415 r---~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVL------d~G~IvE~Gtp~eL 1483 (1513)
+ +|+++||||||++||+++...+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|+++
T Consensus 845 ~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 845 KRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 7 589999999999999999999999998865 478999999999999999999999 79999999999886
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=343.48 Aligned_cols=201 Identities=26% Similarity=0.449 Sum_probs=166.2
Q ss_pred ceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe------------E
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------K 697 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------------~ 697 (1513)
..++++|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 46999999999963 47999999999999999999999999999999999999999999999873 6
Q ss_pred EEEcCCCcccC-ccHHHHHcc-CCCC--CchHHH----HHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHH
Q 000432 698 AYVPQSPWILT-GNIRENILF-GNQY--DSCKYD----RTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIAR 769 (1513)
Q Consensus 698 ayv~Q~~~l~~-~ti~eNI~f-g~~~--~~~~~~----~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lAR 769 (1513)
|||||++.++. .|++||+.| +.-+ +..... ++++.++ +++..++.+ .+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~----~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAK-------LENKADAKV----GELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CchHhcCch----hhCCHHHHHHHHHHH
Confidence 99999998885 699999985 3211 212111 2222222 222233333 479999999999999
Q ss_pred HHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000432 770 AVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 770 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
|+.++|++++|||||++||+.+.+.+++ .+..+. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~-~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999887765 566553 48999999999999865 999999999999999999998654
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=341.90 Aligned_cols=208 Identities=23% Similarity=0.392 Sum_probs=165.8
Q ss_pred ceEEEEeEEEEeCCCC--CCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC------------
Q 000432 630 FEVEVVNGKFSWNPES--SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG------------ 695 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g------------ 695 (1513)
..|+++|++++|+... ..++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4689999999996431 13699999999999999999999999999999999999999999998876
Q ss_pred ------eEEEEcCCC--cccCccHHHHHccCCCC---CchH-HHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHH
Q 000432 696 ------TKAYVPQSP--WILTGNIRENILFGNQY---DSCK-YDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQ 763 (1513)
Q Consensus 696 ------~~ayv~Q~~--~l~~~ti~eNI~fg~~~---~~~~-~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkq 763 (1513)
.++||+|+| .+++.|++|||.|+... ..+. .+++. .+.+.+ .++.+ .......+|||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~---~ll~~~-~L~~~---~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVP---ELLKLV-QLPED---YVKRSPFELSGGQKR 157 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHH---HHHHHc-CCChh---HhcCChhhCCHHHHH
Confidence 268999998 46778999999986421 1111 11111 111111 12211 234566789999999
Q ss_pred HHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChH
Q 000432 764 RIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFE 840 (1513)
Q Consensus 764 Ri~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~ 840 (1513)
|++||||++.+|+++||||||++||+.+.+.+. +.+..+. .++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFI-NLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999977775 4565553 3799999999999875 59999999999999999998
Q ss_pred HHHhc
Q 000432 841 ELLKQ 845 (1513)
Q Consensus 841 ~l~~~ 845 (1513)
++.+.
T Consensus 237 ~~~~~ 241 (289)
T PRK13645 237 EIFSN 241 (289)
T ss_pred HHhcC
Confidence 87653
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=336.89 Aligned_cols=206 Identities=25% Similarity=0.396 Sum_probs=171.0
Q ss_pred cceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCcc-----CCCcEEEECC--------
Q 000432 629 EFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQ-----KMAGTVKISG-------- 695 (1513)
Q Consensus 629 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~-----~~~G~i~~~g-------- 695 (1513)
...++++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|.|+++ |++|+|.++|
T Consensus 18 ~~~l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYG---KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEEC---CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 34799999999995 2579999999999999999999999999999999999996 5899998877
Q ss_pred -------eEEEEcCCCcccCccHHHHHccCCCC----Cc----hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChH
Q 000432 696 -------TKAYVPQSPWILTGNIRENILFGNQY----DS----CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGG 760 (1513)
Q Consensus 696 -------~~ayv~Q~~~l~~~ti~eNI~fg~~~----~~----~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGG 760 (1513)
.++||+|++.++..|++|||.++... ++ ++..++++.+++.+++ .+..+..+.+||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G 167 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGG 167 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHH
Confidence 26999999999999999999986321 11 1122333444433222 13456677899999
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecCh
Q 000432 761 QKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRF 839 (1513)
Q Consensus 761 QkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~ 839 (1513)
||||++||||++++|+++||||||++||+.+.+.+. +++..+.+++|+|++||+++.+. .||+|++|++|++++.|+.
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~ 246 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLE-ETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKT 246 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999977775 46666656799999999999875 5999999999999999999
Q ss_pred HHHHhc
Q 000432 840 EELLKQ 845 (1513)
Q Consensus 840 ~~l~~~ 845 (1513)
+++.+.
T Consensus 247 ~~~~~~ 252 (267)
T PRK14237 247 RNIFTN 252 (267)
T ss_pred HHHhcC
Confidence 998653
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=303.70 Aligned_cols=192 Identities=23% Similarity=0.398 Sum_probs=166.4
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC----------------
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG---------------- 695 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g---------------- 695 (1513)
|+|+||+..|+.. +++|+||||+|++||++-++||||||||||+++|.|+..|+.|+|.++|
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999753 6799999999999999999999999999999999999999999999998
Q ss_pred eEEEEcCCCcccC-ccHHHHHccCCCC---Cch----HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 000432 696 TKAYVPQSPWILT-GNIRENILFGNQY---DSC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQI 767 (1513)
Q Consensus 696 ~~ayv~Q~~~l~~-~ti~eNI~fg~~~---~~~----~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~l 767 (1513)
++|+|+|+.-|.. -||.||+.|.... .+. +..++++..+|.+-...|| ..|||||||||+|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 3699999997765 5999999996532 233 3445666677777777776 4799999999999
Q ss_pred HHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEec
Q 000432 768 ARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI-LKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAG 837 (1513)
Q Consensus 768 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g 837 (1513)
|||+..+|+++|-||||-+|||.++..|++ ++..+ ..|.||+++||+.+.+.. --+++.+++|+++...
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~-lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMR-LFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHH-HHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999999999999999985 45444 469999999999999877 4689999999998643
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=340.12 Aligned_cols=201 Identities=23% Similarity=0.447 Sum_probs=168.3
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe--------------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------- 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------- 696 (1513)
.++++|++++|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|.++|.+|+|.++|.
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 5899999999963 257999999999999999999999999999999999999999999999873
Q ss_pred -EEEEcCCC--cccCccHHHHHccCCC---CCc----hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 000432 697 -KAYVPQSP--WILTGNIRENILFGNQ---YDS----CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766 (1513)
Q Consensus 697 -~ayv~Q~~--~l~~~ti~eNI~fg~~---~~~----~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~ 766 (1513)
++|++|+| .+++.|++||+.++.. +.. ++.++.++.+++.. .......+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhhCCcccCCHHHHHHHH
Confidence 58999998 6788999999987532 121 12233333333322 223457799999999999
Q ss_pred HHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHHHH
Q 000432 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELL 843 (1513)
Q Consensus 767 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~--~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~l~ 843 (1513)
||||++.+|+++||||||++||+.+.+.+. +.+..+.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIM-KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999987775 45655543 799999999999987 59999999999999999999987
Q ss_pred hc
Q 000432 844 KQ 845 (1513)
Q Consensus 844 ~~ 845 (1513)
+.
T Consensus 231 ~~ 232 (283)
T PRK13636 231 AE 232 (283)
T ss_pred cC
Confidence 54
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=331.18 Aligned_cols=201 Identities=28% Similarity=0.423 Sum_probs=164.2
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe--------------
Q 000432 632 VEVVNGKFSWNPES-SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------- 696 (1513)
Q Consensus 632 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------- 696 (1513)
|+++|++++|+... ..++|+|+||+|++|++++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 67899999996321 127999999999999999999999999999999999999999999998763
Q ss_pred --EEEEcCCCcccC-ccHHHHHccCCC---CCchH----HHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 000432 697 --KAYVPQSPWILT-GNIRENILFGNQ---YDSCK----YDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766 (1513)
Q Consensus 697 --~ayv~Q~~~l~~-~ti~eNI~fg~~---~~~~~----~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~ 766 (1513)
++|++|++.++. .|++||+.++.. .+... ..+.++..++ .........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGL-----------EDKADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-----------hhhhhcChhhCCHHHHHHHH
Confidence 689999999986 699999987532 12111 1222222222 22334456789999999999
Q ss_pred HHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHH
Q 000432 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELL 843 (1513)
Q Consensus 767 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~ 843 (1513)
||||+..+|+++||||||++||+.+.+.+. +.+..+. .++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSIL-ALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999977775 4565543 37899999999998765 9999999999999999988875
Q ss_pred h
Q 000432 844 K 844 (1513)
Q Consensus 844 ~ 844 (1513)
+
T Consensus 230 ~ 230 (233)
T cd03258 230 A 230 (233)
T ss_pred c
Confidence 4
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=328.15 Aligned_cols=188 Identities=32% Similarity=0.539 Sum_probs=154.0
Q ss_pred EEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe--------EEEEcCCCc
Q 000432 634 VVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT--------KAYVPQSPW 705 (1513)
Q Consensus 634 ~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~--------~ayv~Q~~~ 705 (1513)
++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|. ++|++|++.
T Consensus 2 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 2 VEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred cccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccc
Confidence 5789999963 46999999999999999999999999999999999999999999999984 799999987
Q ss_pred c---cCccHHHHHccCCCC-------C----chHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000432 706 I---LTGNIRENILFGNQY-------D----SCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAV 771 (1513)
Q Consensus 706 l---~~~ti~eNI~fg~~~-------~----~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal 771 (1513)
+ ++.|++||+.++... . +++.+++++.+++.+.. .....+||||||||++||||+
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al 147 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELA-----------DRQIGELSGGQQQRVLLARAL 147 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHH-----------hCCcccCCHHHHHHHHHHHHH
Confidence 6 568999999876431 1 12233344444443222 234568999999999999999
Q ss_pred hcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEec
Q 000432 772 YQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAG 837 (1513)
Q Consensus 772 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g 837 (1513)
..+|+++||||||++||+.+.+.+.+ .+..+. +++|+|++||+++++.. ||+|++|++| +++.|
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYE-LLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999877764 555543 67999999999999865 9999999886 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=333.92 Aligned_cols=204 Identities=28% Similarity=0.407 Sum_probs=163.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------EE
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------KA 698 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------~a 698 (1513)
++++|++++|++. .++|+|+||+|++|++++|+|+||||||||+++|.|+++|++|+|.++|. ++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4688999999642 46999999999999999999999999999999999999999999999873 58
Q ss_pred EEcCCCcccC-ccHHHHHccCCCC---CchHHHHHHHHHhcHHHHhhccCCCC--ccccCCCCCCChHHHHHHHHHHHHh
Q 000432 699 YVPQSPWILT-GNIRENILFGNQY---DSCKYDRTVEACALVKDFELFASGDL--TEIGERGINMSGGQKQRIQIARAVY 772 (1513)
Q Consensus 699 yv~Q~~~l~~-~ti~eNI~fg~~~---~~~~~~~v~~~~~l~~d~~~l~~Gd~--T~Ige~g~~LSGGQkqRi~lARal~ 772 (1513)
|++|+|.++. .|++||+.++..+ +.+..++. ..+.++.+ |.. ......+.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRER-----ADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999885 6999999876322 21111111 11112222 111 1234567899999999999999999
Q ss_pred cCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHHHHhc
Q 000432 773 QDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 773 ~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
++|+++||||||++||+.+.+.+. +.+..+. .++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQ-EEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999977665 4565543 3799999999999865 5999999999999999999887643
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=380.58 Aligned_cols=211 Identities=25% Similarity=0.298 Sum_probs=149.9
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHH---------HHhccCCCCCc--------EEEEc
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQ---------AIFRIVEPTMG--------SIIID 1323 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~---------lL~rl~ep~~G--------~I~ID 1323 (1513)
.++++|++. ..|+|+|++|++||.+||+|++|||||||++ .|.|...+..+ -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 588888762 2699999999999999999999999999999 44453322111 24555
Q ss_pred CeeCCCCCh----------HHhhh---------ce-----EEEcCC------------------C---------------
Q 000432 1324 NVDITKIGL----------HDLRS---------RL-----GIIPQD------------------P--------------- 1346 (1513)
Q Consensus 1324 GvdI~~i~l----------~~LR~---------~i-----siVpQd------------------p--------------- 1346 (1513)
-.+|..-+. +++|+ +. .+.+|. |
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 554443211 14551 11 122221 1
Q ss_pred -----ccccC-cHhhccCCCCC-C-----CHHHHHHHHHHcCCcHHHHhhhccccch-hccCCCCCChhHHHHHHHHHHH
Q 000432 1347 -----TLFDG-TVRGNLDPLVQ-Y-----SDKQVWEALDKCQLGDLVRAKEEKLDST-VAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1347 -----~LF~g-TIR~NLdp~~~-~-----sdeei~~aL~~~~l~~~I~~lp~gLdt~-V~e~G~nLSgGQRQrl~LARAL 1413 (1513)
+.+.+ ||.|||++... + +.+++.+.++ .++. -|++.. .+....+||||||||++|||||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~------~L~~--vGL~~l~l~q~~~tLSGGE~QRV~LAraL 824 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH------ALCS--LGLDYLPLGRPLSSLSGGEIQRLKLAYEL 824 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH------HHHH--cCCcchhhcCccccCCHHHHHHHHHHHHH
Confidence 13333 77777764210 0 1223333221 1111 145443 4666778999999999999999
Q ss_pred c---cCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhcCEEEEEe------CCEEeEecChhHH
Q 000432 1414 L---KKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVIDSDLVLVLS------DGRIAEYDSPTKL 1483 (1513)
Q Consensus 1414 L---r~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVLd------~G~IvE~Gtp~eL 1483 (1513)
+ ++|++|||||||++||.++.+.+.+.|++.. ++.|||+|+|+++.+..||+|++|+ +|++++.|+|+++
T Consensus 825 ~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 825 LAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred hhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 8 5999999999999999999999999998764 4789999999999998899999996 8999999999999
Q ss_pred Hhc
Q 000432 1484 LER 1486 (1513)
Q Consensus 1484 l~~ 1486 (1513)
.+.
T Consensus 905 ~~~ 907 (1809)
T PRK00635 905 IHL 907 (1809)
T ss_pred Hhc
Confidence 864
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=328.22 Aligned_cols=191 Identities=29% Similarity=0.428 Sum_probs=157.6
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-----------EEEE
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-----------KAYV 700 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-----------~ayv 700 (1513)
|+++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|.+|+|.++|. ++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 468999999963 47999999999999999999999999999999999999999999999872 6999
Q ss_pred cCCCcccC-ccHHHHHccCCC---CCchHH----HHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000432 701 PQSPWILT-GNIRENILFGNQ---YDSCKY----DRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVY 772 (1513)
Q Consensus 701 ~Q~~~l~~-~ti~eNI~fg~~---~~~~~~----~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~ 772 (1513)
+|++.++. .|++||+.++.. .+.+.. ++.++..++. ........+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-----------HLLDRKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-----------HHHhCChhhCCHHHHHHHHHHHHHh
Confidence 99999885 599999987632 222222 2222222222 2234455789999999999999999
Q ss_pred cCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEec
Q 000432 773 QDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAG 837 (1513)
Q Consensus 773 ~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g 837 (1513)
.+|+++||||||++||+++.+.+.+ .++.+. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRA-ELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999877764 565543 37999999999998765 9999999999998865
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=338.45 Aligned_cols=203 Identities=25% Similarity=0.407 Sum_probs=168.9
Q ss_pred ceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCC---cEEEECCe----------
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMA---GTVKISGT---------- 696 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~---G~i~~~g~---------- 696 (1513)
..++++|++|.|+.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++ |+|.++|.
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 368999999999642 3479999999999999999999999999999999999999988 89999873
Q ss_pred ---EEEEcCCCc--ccCccHHHHHccCCCC---Cch----HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHH
Q 000432 697 ---KAYVPQSPW--ILTGNIRENILFGNQY---DSC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQR 764 (1513)
Q Consensus 697 ---~ayv~Q~~~--l~~~ti~eNI~fg~~~---~~~----~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqR 764 (1513)
++||+|+|+ +++.|++|||.|+... +.+ +.++.++.+++.+. ......+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDY-----------IDSEPANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhH-----------hcCCcccCCHHHHHH
Confidence 599999984 6688999999986422 222 23334444444332 334457899999999
Q ss_pred HHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHH
Q 000432 765 IQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEEL 842 (1513)
Q Consensus 765 i~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l 842 (1513)
++||||++++|+++||||||++||+.+.+.+.+ .+..+. .++|+|++||+++.+..||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 230 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILK-LIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEI 230 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999887765 565543 27899999999999888999999999999999999888
Q ss_pred Hhc
Q 000432 843 LKQ 845 (1513)
Q Consensus 843 ~~~ 845 (1513)
.+.
T Consensus 231 ~~~ 233 (282)
T PRK13640 231 FSK 233 (282)
T ss_pred hcC
Confidence 653
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=335.46 Aligned_cols=204 Identities=24% Similarity=0.392 Sum_probs=166.8
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCcc--C---CCcEEEECC----------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQ--K---MAGTVKISG---------- 695 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~--~---~~G~i~~~g---------- 695 (1513)
.++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|.|..+ | ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 479999999999999999999999999999999999853 6 589999876
Q ss_pred -----eEEEEcCCCcccCccHHHHHccCCCC----CchHH----HHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHH
Q 000432 696 -----TKAYVPQSPWILTGNIRENILFGNQY----DSCKY----DRTVEACALVKDFELFASGDLTEIGERGINMSGGQK 762 (1513)
Q Consensus 696 -----~~ayv~Q~~~l~~~ti~eNI~fg~~~----~~~~~----~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQk 762 (1513)
.++||+|++.+++.|++||+.++... +++.. .++++.+++.+.+ .+.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV-------KDRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH-------HHHHhcCcccCCHHHH
Confidence 26899999999999999999875321 11111 1222223222111 1234566789999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHH
Q 000432 763 QRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEE 841 (1513)
Q Consensus 763 qRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~ 841 (1513)
||++||||+..+|+++||||||++||+++.+.+. +.+..+.+++|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIE-ETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH-HHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999988776 46666656799999999999875 599999999999999999999
Q ss_pred HHhc
Q 000432 842 LLKQ 845 (1513)
Q Consensus 842 l~~~ 845 (1513)
+.+.
T Consensus 234 ~~~~ 237 (252)
T PRK14239 234 MFMN 237 (252)
T ss_pred HHhC
Confidence 8654
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=329.21 Aligned_cols=196 Identities=25% Similarity=0.355 Sum_probs=161.6
Q ss_pred eEEEEeEEEEeCCCC-CCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC--------------
Q 000432 631 EVEVVNGKFSWNPES-SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG-------------- 695 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g-------------- 695 (1513)
.++++|++++|+... ..++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996422 14799999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEcCCCcccCc-cHHHHHccCCC---CCchH----HHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHH
Q 000432 696 ---TKAYVPQSPWILTG-NIRENILFGNQ---YDSCK----YDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQR 764 (1513)
Q Consensus 696 ---~~ayv~Q~~~l~~~-ti~eNI~fg~~---~~~~~----~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqR 764 (1513)
.++|++|++.++.. |++||+.++.. .+.+. ..++++.+++ .........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGL-----------EHRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------chhhhCChhhCCHHHHHH
Confidence 27899999988865 99999987421 22211 2222333222 233445567899999999
Q ss_pred HHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccccCCEEEEEeCCeEEEecC
Q 000432 765 IQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPAADIILVMENGRIAQAGR 838 (1513)
Q Consensus 765 i~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~ 838 (1513)
++||||++.+|+++||||||++||+.+.+.+. +.+..+. +++|+|++||+++.+..+|++++|++|++++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIF-QLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999977775 4565543 4799999999999998889999999999998775
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=340.10 Aligned_cols=204 Identities=21% Similarity=0.419 Sum_probs=165.7
Q ss_pred eEEEEeEEEEeCCCC--CCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe------------
Q 000432 631 EVEVVNGKFSWNPES--SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------ 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------------ 696 (1513)
.++++|++++|+... ..++|+|+||+|++|++++|+|+||||||||+++|+|.++|++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 378999999996422 147999999999999999999999999999999999999999999999872
Q ss_pred -----EEEEcCCC--cccCccHHHHHccCCC---CCchHHHH----HHHHHhcHHHHhhccCCCCccccCCCCCCChHHH
Q 000432 697 -----KAYVPQSP--WILTGNIRENILFGNQ---YDSCKYDR----TVEACALVKDFELFASGDLTEIGERGINMSGGQK 762 (1513)
Q Consensus 697 -----~ayv~Q~~--~l~~~ti~eNI~fg~~---~~~~~~~~----v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQk 762 (1513)
++|++|+| .+++.|++|||.|+.. .+.+..++ +++..++.+ .....+..+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~ 151 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQM 151 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHH
Confidence 68999998 6788999999987632 22222211 122222211 122455678999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChH
Q 000432 763 QRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFE 840 (1513)
Q Consensus 763 qRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~ 840 (1513)
||++||||++.+|+++||||||++||+.+.+.+.+ .+..+. .++|+|++||+++.+.. ||+|++|++|++++.|+.+
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMT-LFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPK 230 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999777764 555543 47999999999998864 9999999999999999998
Q ss_pred HHHhc
Q 000432 841 ELLKQ 845 (1513)
Q Consensus 841 ~l~~~ 845 (1513)
++.+.
T Consensus 231 ~~~~~ 235 (280)
T PRK13649 231 DIFQD 235 (280)
T ss_pred HHhcC
Confidence 88653
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=333.08 Aligned_cols=196 Identities=27% Similarity=0.354 Sum_probs=163.5
Q ss_pred ceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe--------EEEEc
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT--------KAYVP 701 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~--------~ayv~ 701 (1513)
..|+++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|.++|++|+|.++|. ++|++
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 35999999999963 47999999999999999999999999999999999999999999999873 79999
Q ss_pred CCCcccC-ccHHHHHccCCCC-CchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEE
Q 000432 702 QSPWILT-GNIRENILFGNQY-DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYL 779 (1513)
Q Consensus 702 Q~~~l~~-~ti~eNI~fg~~~-~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~ill 779 (1513)
|++.++. .|++||+.++... .+++..+.++..++.+ .......+||||||||++||||++++|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD-----------RANEWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998886 6999999986421 1223333444443322 2344567899999999999999999999999
Q ss_pred eeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChH
Q 000432 780 LDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFE 840 (1513)
Q Consensus 780 LDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~ 840 (1513)
|||||++||+.+.+.+.+ .+..+. .++|+|+|||+++.+. .||+|++|++|++++.|+.+
T Consensus 157 LDEPt~~LD~~~~~~l~~-~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQD-LIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999777764 565543 3789999999999875 49999999999999888754
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=335.29 Aligned_cols=204 Identities=25% Similarity=0.423 Sum_probs=167.7
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcC---ccC--CCcEEEECC----------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGE---IQK--MAGTVKISG---------- 695 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~---~~~--~~G~i~~~g---------- 695 (1513)
.++++|+++.|+. +++|+|+||++++|++++|+|+||||||||+++|.|+ +++ ++|+|.++|
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5889999999963 4699999999999999999999999999999999996 454 589998876
Q ss_pred -----eEEEEcCCCcccCccHHHHHccCCCC----Cch----HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHH
Q 000432 696 -----TKAYVPQSPWILTGNIRENILFGNQY----DSC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQK 762 (1513)
Q Consensus 696 -----~~ayv~Q~~~l~~~ti~eNI~fg~~~----~~~----~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQk 762 (1513)
.++|+||++.+++.|++||+.++... +++ +.+++++.+++.+++ .+.....+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHH
Confidence 26999999999989999999876321 111 222333333332222 1234567789999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHH
Q 000432 763 QRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEE 841 (1513)
Q Consensus 763 qRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~ 841 (1513)
||++||||++.+|+++||||||++||+.+.+.+. +.++.+.+++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVE-ELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999987775 56666666899999999999875 499999999999999999999
Q ss_pred HHhc
Q 000432 842 LLKQ 845 (1513)
Q Consensus 842 l~~~ 845 (1513)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14245 232 IFTN 235 (250)
T ss_pred HhcC
Confidence 8753
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=335.87 Aligned_cols=204 Identities=27% Similarity=0.430 Sum_probs=167.4
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCcc-----CCCcEEEECCe---------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQ-----KMAGTVKISGT--------- 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~-----~~~G~i~~~g~--------- 696 (1513)
.++++|++|+|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4889999999963 479999999999999999999999999999999999997 47999998773
Q ss_pred ------EEEEcCCCcccCccHHHHHccCCCC----Cch----HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHH
Q 000432 697 ------KAYVPQSPWILTGNIRENILFGNQY----DSC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQK 762 (1513)
Q Consensus 697 ------~ayv~Q~~~l~~~ti~eNI~fg~~~----~~~----~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQk 762 (1513)
++|++|++.+++.|++||+.++... +++ +.+++++.+++..+. .........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHH
Confidence 5899999999999999999876421 111 122233333332111 1123456789999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000432 763 QRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEE 841 (1513)
Q Consensus 763 qRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~ 841 (1513)
||++||||++++|+++||||||++||+.+.+.+. +.+..+.+++|+|+|||+++.+.. ||+|++|++|++++.|+.++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIE-ETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHH-HHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999977775 466666567899999999998765 99999999999999999998
Q ss_pred HHhc
Q 000432 842 LLKQ 845 (1513)
Q Consensus 842 l~~~ 845 (1513)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14251 233 MFIA 236 (251)
T ss_pred HHhC
Confidence 8643
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=335.82 Aligned_cols=206 Identities=24% Similarity=0.397 Sum_probs=168.9
Q ss_pred cceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCcc-----CCCcEEEECCe-------
Q 000432 629 EFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQ-----KMAGTVKISGT------- 696 (1513)
Q Consensus 629 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~-----~~~G~i~~~g~------- 696 (1513)
+..++++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|.++ |++|+|.++|.
T Consensus 11 ~~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 11 NIIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 346999999999963 469999999999999999999999999999999999987 58999998762
Q ss_pred --------EEEEcCCCcccCccHHHHHccCCCCC---c---hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHH
Q 000432 697 --------KAYVPQSPWILTGNIRENILFGNQYD---S---CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQK 762 (1513)
Q Consensus 697 --------~ayv~Q~~~l~~~ti~eNI~fg~~~~---~---~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQk 762 (1513)
++||+|++.++..|++||+.++.... . ++.+++++.+++.. +..+.......+||||||
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~ 160 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-------ECKDKLNESGYSLSGGQQ 160 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-------hhhhhhCCCcccCCHHHH
Confidence 69999999999889999999875321 1 11222233333221 112234556778999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccc-cCCEEEEEeC-----------
Q 000432 763 QRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLP-AADIILVMEN----------- 830 (1513)
Q Consensus 763 qRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~-~~d~i~vl~~----------- 830 (1513)
||++||||++++|+++||||||++||+.+.+.+. +.++.+.+++|+|++||+++.+. .||+|++|++
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIE-ETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEecccccccccccc
Confidence 9999999999999999999999999999988775 46666656789999999999875 4999999996
Q ss_pred CeEEEecChHHHHhc
Q 000432 831 GRIAQAGRFEELLKQ 845 (1513)
Q Consensus 831 G~i~~~g~~~~l~~~ 845 (1513)
|++++.|+.+++.+.
T Consensus 240 g~~~~~~~~~~~~~~ 254 (269)
T PRK14259 240 GYLVEFNETKKIFNS 254 (269)
T ss_pred ceEEEeCCHHHHHhC
Confidence 678999999998754
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=328.08 Aligned_cols=198 Identities=23% Similarity=0.338 Sum_probs=165.2
Q ss_pred EEEEEEEEEEcC----C-CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEc--C--eeCCCCCh
Q 000432 1262 ISFHNLQIRYAE----H-LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIID--N--VDITKIGL 1332 (1513)
Q Consensus 1262 I~f~nvsf~Y~~----~-~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~ID--G--vdI~~i~l 1332 (1513)
|+++|++++|+. + ..++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+| | +++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999963 1 2469999999999999999999999999999999999999999999998 4 37776665
Q ss_pred HH---h-hhceEEEcCCCccccC-cHhhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCC
Q 000432 1333 HD---L-RSRLGIIPQDPTLFDG-TVRGNLDPL---VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWS 1400 (1513)
Q Consensus 1333 ~~---L-R~~isiVpQdp~LF~g-TIR~NLdp~---~~~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLS 1400 (1513)
.. + +++++|+||+|.+|.. |+++|+... ...+ ++++.++++..++.+... + ..+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~----~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW------H----LPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh------h----CCcccCC
Confidence 54 3 4579999999998865 999998531 1122 345677777777754321 1 2356799
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHh-hcCEEEEE
Q 000432 1401 VGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVI-DSDLVLVL 1469 (1513)
Q Consensus 1401 gGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~-~~DrIlVL 1469 (1513)
||||||++||||++++|++|+|||||++||+++.+.+.+.|++.. +++|+|+|+|+++.+. -||+|+.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999998864 4789999999999886 49999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=336.28 Aligned_cols=203 Identities=26% Similarity=0.455 Sum_probs=167.6
Q ss_pred ceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------- 696 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------------- 696 (1513)
..++++|++++|+.+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 368999999999632 357999999999999999999999999999999999999999999999872
Q ss_pred EEEEcCCC--cccCccHHHHHccCCC---CCchHH----HHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 000432 697 KAYVPQSP--WILTGNIRENILFGNQ---YDSCKY----DRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQI 767 (1513)
Q Consensus 697 ~ayv~Q~~--~l~~~ti~eNI~fg~~---~~~~~~----~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~l 767 (1513)
++||+|+| .+++.|++|||.++.. ++.+.. .++++..++.+. ......+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDY-----------LDKEPQNLSGGQKQRVAI 153 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCCcccCCHHHHHHHHH
Confidence 59999998 4557899999998632 222222 223333333322 334557999999999999
Q ss_pred HHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000432 768 ARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-K-DKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 768 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~-~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
|||++++|+++||||||++||+.+.+.+++ .+..+. + ++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKK-IMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999887764 565543 3 4899999999998888999999999999999998887653
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=326.70 Aligned_cols=190 Identities=24% Similarity=0.409 Sum_probs=157.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC------------eEEE
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG------------TKAY 699 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g------------~~ay 699 (1513)
|+++|++|.|+. +++++|+||++++| +++|+|+||||||||+++|.|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 468999999963 47999999999999 9999999999999999999999999999999987 2699
Q ss_pred EcCCCcccCc-cHHHHHccCCC---CCc----hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000432 700 VPQSPWILTG-NIRENILFGNQ---YDS----CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAV 771 (1513)
Q Consensus 700 v~Q~~~l~~~-ti~eNI~fg~~---~~~----~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal 771 (1513)
++|++.++.. |++||+.+... .++ ++.++.++.+++.+.. .....+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-----------KKKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-----------hCchhhCCHHHHHHHHHHHHH
Confidence 9999999875 99999987421 111 1223334444443222 224467999999999999999
Q ss_pred hcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEec
Q 000432 772 YQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAG 837 (1513)
Q Consensus 772 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g 837 (1513)
+++|+++||||||++||+.+.+.+. +.++...+++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFR-NLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999988776 466666567999999999999864 9999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=337.08 Aligned_cols=203 Identities=29% Similarity=0.437 Sum_probs=168.3
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------E
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------K 697 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------~ 697 (1513)
.++++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 488999999997433346999999999999999999999999999999999999999999999873 5
Q ss_pred EEEcCCCc--ccCccHHHHHccCCC---CCchH----HHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHH
Q 000432 698 AYVPQSPW--ILTGNIRENILFGNQ---YDSCK----YDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIA 768 (1513)
Q Consensus 698 ayv~Q~~~--l~~~ti~eNI~fg~~---~~~~~----~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lA 768 (1513)
+|++|+|. ++..|+.|||.++.. ...+. .+++++.+++.+. .......||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDF-----------KTREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhH-----------hhCCcccCCHHHHHHHHHH
Confidence 99999983 667899999987632 12221 2333333333221 2234568999999999999
Q ss_pred HHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000432 769 RAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 769 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~--~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
||++.+|+++||||||++||+.+.+.+.+ .+..+.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMR-VIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999887764 5655543 7999999999999888999999999999999999998754
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=370.05 Aligned_cols=199 Identities=25% Similarity=0.351 Sum_probs=170.9
Q ss_pred CcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCC--CcEEEEcCeeCCCCChHHhhhceEEEcCCCcccc-Cc
Q 000432 1276 PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPT--MGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFD-GT 1352 (1513)
Q Consensus 1276 ~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~--~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~LF~-gT 1352 (1513)
..+|+|+|+++++||++||+||||||||||+++|.|+.+|. +|+|.+||.++. ...+++++||||++.+|. .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 35999999999999999999999999999999999999885 899999999874 245678999999999996 59
Q ss_pred HhhccCCC------CCCCHHH----HHHHHHHcCCcHHHHhhhccccchhccC-CCCCChhHHHHHHHHHHHccCCCEEE
Q 000432 1353 VRGNLDPL------VQYSDKQ----VWEALDKCQLGDLVRAKEEKLDSTVAEN-GENWSVGQRQLFCLGRTLLKKSSILV 1421 (1513)
Q Consensus 1353 IR~NLdp~------~~~sdee----i~~aL~~~~l~~~I~~lp~gLdt~V~e~-G~nLSgGQRQrl~LARALLr~~~ILi 1421 (1513)
+||||.+. .+.+++| +.+.++..++. +..||.+|+. ...||||||||++|||||+++|+||+
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 99999642 1234443 44455555553 3458888754 67899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhh-H-hhcCEEEEEeCCEEeEecChhHHHh
Q 000432 1422 LDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHT-V-IDSDLVLVLSDGRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1422 LDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVLd~G~IvE~Gtp~eLl~ 1485 (1513)
|||||++||+.+...+.+.|++.. +++|||+++|+++. + ..||+|++|++|++++.|+++++.+
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 999999999999999999999865 58999999999984 5 4599999999999999999999864
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=335.07 Aligned_cols=205 Identities=23% Similarity=0.409 Sum_probs=167.8
Q ss_pred ceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccC-----CCcEEEECCe--------
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQK-----MAGTVKISGT-------- 696 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~-----~~G~i~~~g~-------- 696 (1513)
..++++|+++.|++ +++|+|+||+|++|++++|+|+||||||||+++|.|+++| ++|+|.++|.
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 36999999999963 4799999999999999999999999999999999999975 7999998762
Q ss_pred -------EEEEcCCCcccCccHHHHHccCCC---CCchHH----HHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHH
Q 000432 697 -------KAYVPQSPWILTGNIRENILFGNQ---YDSCKY----DRTVEACALVKDFELFASGDLTEIGERGINMSGGQK 762 (1513)
Q Consensus 697 -------~ayv~Q~~~l~~~ti~eNI~fg~~---~~~~~~----~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQk 762 (1513)
++|++|++.++..|++||+.|+.. .+.+.. +++++.+++..++ .........+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHH
Confidence 589999999999999999988632 222221 2222322222111 1233456778999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000432 763 QRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEE 841 (1513)
Q Consensus 763 qRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~ 841 (1513)
||++||||++.+|+++||||||++||+.+.+.+. +.++.+.+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIE-DLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999977775 566665568999999999998755 99999999999999999998
Q ss_pred HHhc
Q 000432 842 LLKQ 845 (1513)
Q Consensus 842 l~~~ 845 (1513)
+.+.
T Consensus 240 ~~~~ 243 (258)
T PRK14268 240 IFHN 243 (258)
T ss_pred HhcC
Confidence 8643
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=331.24 Aligned_cols=203 Identities=28% Similarity=0.457 Sum_probs=165.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC---------------e
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG---------------T 696 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g---------------~ 696 (1513)
++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 678999999963 4799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEcCCCcccC-ccHHHHHccCCC----CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000432 697 KAYVPQSPWILT-GNIRENILFGNQ----YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAV 771 (1513)
Q Consensus 697 ~ayv~Q~~~l~~-~ti~eNI~fg~~----~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal 771 (1513)
++|++|++.++. .|++||+.++.. .+.+..++.+. +-++.+ |.......+...||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQAR-----ELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHH-----HHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 699999998885 599999988631 12221111111 111111 222334455678999999999999999
Q ss_pred hcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000432 772 YQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 772 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
+.+|++++|||||++||+++.+.+.+ .+..+. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLK-VMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999877764 565543 48999999999999865 999999999999999999888653
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=322.46 Aligned_cols=194 Identities=23% Similarity=0.300 Sum_probs=167.9
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceE
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~is 1340 (1513)
-|+++||+++|++ ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. . ..|++++
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~ 76 (207)
T PRK13539 2 MLEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACH 76 (207)
T ss_pred EEEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcE
Confidence 3789999999964 359999999999999999999999999999999999999999999999998753 2 2888999
Q ss_pred EEcCCCccc-cCcHhhccCCC---CCCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccC
Q 000432 1341 IIPQDPTLF-DGTVRGNLDPL---VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKK 1416 (1513)
Q Consensus 1341 iVpQdp~LF-~gTIR~NLdp~---~~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~ 1416 (1513)
++||++.++ ..|+++|+... ....++++.++++..++.+.... + ..+||||||||++||||++++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL-------P----FGYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcC-------C----hhhcCHHHHHHHHHHHHHhcC
Confidence 999988775 67999998642 12346678899999998654322 2 236999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhcCEEEEEeC
Q 000432 1417 SSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVIDSDLVLVLSD 1471 (1513)
Q Consensus 1417 ~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVLd~ 1471 (1513)
|++|+|||||++||..+.+.+.+.|++.. +++|+|+++|+++.+.. |+++-++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999999998753 57899999999999988 99988754
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=332.69 Aligned_cols=203 Identities=25% Similarity=0.418 Sum_probs=167.0
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccC-----CCcEEEECC----------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQK-----MAGTVKISG---------- 695 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~-----~~G~i~~~g---------- 695 (1513)
.++++|+++.|+. +++++|+||+|++||+++|+|+||||||||+++|+|.+++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 5889999999963 4799999999999999999999999999999999998763 689999886
Q ss_pred -----eEEEEcCCCcccCccHHHHHccCCCC----CchHH----HHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHH
Q 000432 696 -----TKAYVPQSPWILTGNIRENILFGNQY----DSCKY----DRTVEACALVKDFELFASGDLTEIGERGINMSGGQK 762 (1513)
Q Consensus 696 -----~~ayv~Q~~~l~~~ti~eNI~fg~~~----~~~~~----~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQk 762 (1513)
.++||+|++.+++.|++||+.++... +.+.. ++.++.+++.+++. ........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 26999999999989999999986421 11111 22233333322221 234556779999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000432 763 QRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEE 841 (1513)
Q Consensus 763 qRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~ 841 (1513)
||++||||++++|+++||||||++||+.+.+.+. +++..+.+++|+|+|||+++.+.. ||+|++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIE-ELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999977775 567666668999999999998765 99999999999999999988
Q ss_pred HHh
Q 000432 842 LLK 844 (1513)
Q Consensus 842 l~~ 844 (1513)
+..
T Consensus 232 ~~~ 234 (250)
T PRK14240 232 LFT 234 (250)
T ss_pred HHh
Confidence 764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=365.25 Aligned_cols=208 Identities=20% Similarity=0.293 Sum_probs=175.8
Q ss_pred EEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChH-HhhhceEEE
Q 000432 1264 FHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLH-DLRSRLGII 1342 (1513)
Q Consensus 1264 f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~-~LR~~isiV 1342 (1513)
++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|+++++|
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999964 3599999999999999999999999999999999999999999999999999876543 457889999
Q ss_pred cCCCcccc-CcHhhccCCCC----C--CCHH----HHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHH
Q 000432 1343 PQDPTLFD-GTVRGNLDPLV----Q--YSDK----QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGR 1411 (1513)
Q Consensus 1343 pQdp~LF~-gTIR~NLdp~~----~--~sde----ei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LAR 1411 (1513)
||++.+|. .|+++|+.... . .+.+ ++.++++..++.+ .......+||||||||++|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-----------DPRAKVATLSVSQMQMIEIAK 147 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCCHHHHHHHHHHH
Confidence 99998775 59999997421 1 1222 3455566555532 222334679999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1412 TLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1412 ALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
||+++|+||||||||++||+++.+.+.+.|++.. +++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999999999998764 47899999999999876 9999999999999999998864
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=326.85 Aligned_cols=191 Identities=28% Similarity=0.410 Sum_probs=156.2
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC---------------
Q 000432 632 VEVVNGKFSWNPES-SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--------------- 695 (1513)
Q Consensus 632 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g--------------- 695 (1513)
++++|++++|++.. ..++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 67899999996422 24699999999999999999999999999999999999999999999876
Q ss_pred --eEEEEcCCCcccC-ccHHHHHccCCC---CCchH----HHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHH
Q 000432 696 --TKAYVPQSPWILT-GNIRENILFGNQ---YDSCK----YDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRI 765 (1513)
Q Consensus 696 --~~ayv~Q~~~l~~-~ti~eNI~fg~~---~~~~~----~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi 765 (1513)
.++|++|++.++. .|++||+.++.. ++... ..+.++.+++ ..........||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL-----------EHRINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHHHH
Confidence 2799999998885 599999987432 22211 1222222222 2233445578999999999
Q ss_pred HHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccccCCEEEEEeCCeEE
Q 000432 766 QIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPAADIILVMENGRIA 834 (1513)
Q Consensus 766 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~~~d~i~vl~~G~i~ 834 (1513)
+||||++.+|+++||||||++||+++.+.+. +.+..+. .++|+|++||+++.+..+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIF-DLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999987776 4565553 378999999999998889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=332.14 Aligned_cols=204 Identities=24% Similarity=0.394 Sum_probs=167.9
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCC-----CcEEEECC----------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKM-----AGTVKISG---------- 695 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~-----~G~i~~~g---------- 695 (1513)
.++++|++|.|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|. +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5889999999963 46999999999999999999999999999999999999987 69998865
Q ss_pred -----eEEEEcCCCcccCccHHHHHccCCCC---C-chHHHHH----HHHHhcHHHHhhccCCCCccccCCCCCCChHHH
Q 000432 696 -----TKAYVPQSPWILTGNIRENILFGNQY---D-SCKYDRT----VEACALVKDFELFASGDLTEIGERGINMSGGQK 762 (1513)
Q Consensus 696 -----~~ayv~Q~~~l~~~ti~eNI~fg~~~---~-~~~~~~v----~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQk 762 (1513)
.++||+|++.+++.|++||+.++..+ . +++.++. ++..++. ++..+.....+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALW-------DEVKDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCc-------hhhhhHhhCCcccCCHHHH
Confidence 26999999999999999999986432 1 1112222 2222221 1112335667889999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000432 763 QRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEE 841 (1513)
Q Consensus 763 qRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~ 841 (1513)
||++||||++++|+++||||||++||+.+.+.+. +++..+.+++|+|+|||+++.+.. ||+|++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIE-ELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999977765 466665568999999999999765 89999999999999999988
Q ss_pred HHhc
Q 000432 842 LLKQ 845 (1513)
Q Consensus 842 l~~~ 845 (1513)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14249 233 IFSR 236 (251)
T ss_pred HHhC
Confidence 8643
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=335.53 Aligned_cols=205 Identities=22% Similarity=0.356 Sum_probs=167.1
Q ss_pred ceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCcc-----CCCcEEEECC---------
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQ-----KMAGTVKISG--------- 695 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~-----~~~G~i~~~g--------- 695 (1513)
..++++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 20 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 20 HILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred ceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 46899999999963 579999999999999999999999999999999999864 6899998876
Q ss_pred ------eEEEEcCCCcccCccHHHHHccCCCCCc----hHH----HHHHHHHhcHHHHhhccCCCCccccCCCCCCChHH
Q 000432 696 ------TKAYVPQSPWILTGNIRENILFGNQYDS----CKY----DRTVEACALVKDFELFASGDLTEIGERGINMSGGQ 761 (1513)
Q Consensus 696 ------~~ayv~Q~~~l~~~ti~eNI~fg~~~~~----~~~----~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQ 761 (1513)
.++|++|+++++++|++||+.++..... ... .+.++.+++.. +..........+|||||
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgGq 169 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWD-------EVKDRLHSSALSLSGGQ 169 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCc-------chHHHHhcCcccCCHHH
Confidence 2689999999999999999997632211 111 11222222211 11123456678999999
Q ss_pred HHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChH
Q 000432 762 KQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFE 840 (1513)
Q Consensus 762 kqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~ 840 (1513)
|||++||||++++|+++||||||++||+.+.+.+. +.+..+.+++|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 170 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 170 QQRLCIARTLAMKPAVLLLDEPASALDPISNAKIE-ELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHH-HHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999977775 56666656789999999999875 59999999999999999998
Q ss_pred HHHhc
Q 000432 841 ELLKQ 845 (1513)
Q Consensus 841 ~l~~~ 845 (1513)
++...
T Consensus 249 ~~~~~ 253 (268)
T PRK14248 249 QIFTS 253 (268)
T ss_pred HHHhC
Confidence 88654
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=341.35 Aligned_cols=201 Identities=26% Similarity=0.436 Sum_probs=164.5
Q ss_pred ceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe------------E
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------K 697 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------------~ 697 (1513)
..|+++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred cEEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 35899999999963 46999999999999999999999999999999999999999999999873 6
Q ss_pred EEEcCCCcccC-ccHHHHHcc-CCC--CCchHH----HHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHH
Q 000432 698 AYVPQSPWILT-GNIRENILF-GNQ--YDSCKY----DRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIAR 769 (1513)
Q Consensus 698 ayv~Q~~~l~~-~ti~eNI~f-g~~--~~~~~~----~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lAR 769 (1513)
+|+||++.++. .|++||+.+ +.. .+.... ++.++.++ +++. ...+..+||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-------l~~~----~~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR-------LESK----ADVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-------ChhH----hcCchhhCCHHHHHHHHHHH
Confidence 99999998885 699999975 221 222211 12222222 2222 22344679999999999999
Q ss_pred HHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000432 770 AVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI-LKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 770 al~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
|++++|+++||||||++||+.+.+.+.+ .+..+ .+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999887764 55554 358999999999999865 999999999999999999998643
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=336.31 Aligned_cols=203 Identities=24% Similarity=0.401 Sum_probs=169.3
Q ss_pred eEEEEeEEEEeCCCC---CCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-----------
Q 000432 631 EVEVVNGKFSWNPES---SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT----------- 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~---~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~----------- 696 (1513)
-++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|.|.++|++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 488999999996421 257999999999999999999999999999999999999999999999872
Q ss_pred ---EEEEcCCCc--ccCccHHHHHccCCC---CCc----hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHH
Q 000432 697 ---KAYVPQSPW--ILTGNIRENILFGNQ---YDS----CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQR 764 (1513)
Q Consensus 697 ---~ayv~Q~~~--l~~~ti~eNI~fg~~---~~~----~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqR 764 (1513)
++||+|+|. ++..|+.||+.|+.. .+. ++.+++++.+++.+.. .....+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYR-----------RHAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHHHH
Confidence 589999984 667799999998732 122 2234444444544332 23446899999999
Q ss_pred HHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHH
Q 000432 765 IQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEEL 842 (1513)
Q Consensus 765 i~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l 842 (1513)
++||||++.+|+++||||||++||+.+.+.+. +++..+. .++|+|+|||+++.+..||++++|++|++++.|+++++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVV-NTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999988776 4666553 38999999999999878999999999999999999998
Q ss_pred Hhc
Q 000432 843 LKQ 845 (1513)
Q Consensus 843 ~~~ 845 (1513)
...
T Consensus 232 ~~~ 234 (280)
T PRK13633 232 FKE 234 (280)
T ss_pred hcC
Confidence 754
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=334.18 Aligned_cols=204 Identities=23% Similarity=0.417 Sum_probs=169.8
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCcc-----CCCcEEEECC----------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQ-----KMAGTVKISG---------- 695 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~-----~~~G~i~~~g---------- 695 (1513)
.++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999963 479999999999999999999999999999999999976 3799999877
Q ss_pred -----eEEEEcCCCcccCccHHHHHccCCCCC------chHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHH
Q 000432 696 -----TKAYVPQSPWILTGNIRENILFGNQYD------SCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQR 764 (1513)
Q Consensus 696 -----~~ayv~Q~~~l~~~ti~eNI~fg~~~~------~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqR 764 (1513)
.++|++|++.+++.|++|||.++.... +++.+++++.+++..++. ......+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHH
Confidence 269999999999889999999864321 112233344444443332 12355677999999999
Q ss_pred HHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEe---------CCeEE
Q 000432 765 IQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVME---------NGRIA 834 (1513)
Q Consensus 765 i~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~-~d~i~vl~---------~G~i~ 834 (1513)
++||||++++|+++||||||++||+++.+.+. +.+..+.+++|+|++||+++.+.. ||+|++|+ +|+++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~ 238 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIE-ELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV 238 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 99999999999999999999999999987765 566666667899999999998765 99999998 89999
Q ss_pred EecChHHHHhc
Q 000432 835 QAGRFEELLKQ 845 (1513)
Q Consensus 835 ~~g~~~~l~~~ 845 (1513)
+.|+.+|+.+.
T Consensus 239 ~~~~~~~~~~~ 249 (264)
T PRK14243 239 EFDRTEKIFNS 249 (264)
T ss_pred EeCCHHHHHhC
Confidence 99999998754
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=310.78 Aligned_cols=162 Identities=25% Similarity=0.445 Sum_probs=146.6
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC--eEEEEcCCCcccCc
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--TKAYVPQSPWILTG 709 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g--~~ayv~Q~~~l~~~ 709 (1513)
|+++|++++|+.+ +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .++|++|++++++.
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLG 78 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccc
Confidence 4689999999632 4799999999999999999999999999999999999999999999987 78999999999999
Q ss_pred cHHHHHccCCCCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEeeCcCCCCCH
Q 000432 710 NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDA 789 (1513)
Q Consensus 710 ti~eNI~fg~~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~illLDep~salD~ 789 (1513)
|++||+.++ ....||||||||++||||++++|+++||||||++||+
T Consensus 79 tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 79 TLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred cHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 999999874 2468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCe
Q 000432 790 HTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGR 832 (1513)
Q Consensus 790 ~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~~d~i~vl~~G~ 832 (1513)
++.+.+.+ .+... ++|+|++||+.+....||+|++|++|.
T Consensus 125 ~~~~~l~~-~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 125 ESEDRLYQ-LLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHHH-HHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99887764 55554 689999999998877899999998763
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=330.16 Aligned_cols=207 Identities=24% Similarity=0.350 Sum_probs=167.4
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe--------------E
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT--------------K 697 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~--------------~ 697 (1513)
|+++|+++.|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 47999999999999999999999999999999999999999999999872 6
Q ss_pred EEEcCCCcccCc-cHHHHHccCCCCCchHH------HHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHH
Q 000432 698 AYVPQSPWILTG-NIRENILFGNQYDSCKY------DRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARA 770 (1513)
Q Consensus 698 ayv~Q~~~l~~~-ti~eNI~fg~~~~~~~~------~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARa 770 (1513)
+|++|++.++.+ |++||+.++...+...+ ..........+-++.+ |..........+||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 899999999986 99999988643211000 0000000111122222 23334456677899999999999999
Q ss_pred HhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000432 771 VYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLK 844 (1513)
Q Consensus 771 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~ 844 (1513)
++++|+++||||||++||+++.+.+. +.+..+.+++|+|++||+++.++. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTA-ELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999987775 466666667999999999999875 99999999999999999988864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=321.41 Aligned_cols=192 Identities=19% Similarity=0.271 Sum_probs=164.3
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEE
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isi 1341 (1513)
|+++|++++|+. ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+ ...|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 578999999964 35999999999999999999999999999999999999999999999999998765 457889999
Q ss_pred EcCCCcccc-CcHhhccCCCC---CCCHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCC
Q 000432 1342 IPQDPTLFD-GTVRGNLDPLV---QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKS 1417 (1513)
Q Consensus 1342 VpQdp~LF~-gTIR~NLdp~~---~~sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~ 1417 (1513)
+||++.+|. .|+++|+.... ...++++.++++..++.+... +. ..+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-------LP----AAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-------CC----hhhcCHHHHHHHHHHHHHhcCC
Confidence 999999886 69999995321 112446888999999876543 22 2469999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHh-cCCcEEEEeccChhhHhhcCEEEE
Q 000432 1418 SILVLDEATASVDSATDGVIQKIISQE-FKDRTVVTIAHRIHTVIDSDLVLV 1468 (1513)
Q Consensus 1418 ~ILiLDEaTSslD~~Te~~Iq~~i~~~-~~~~TvI~IAHRl~ti~~~DrIlV 1468 (1513)
++|+|||||++||..+.+.+.+.|++. .++.|+|+++|+...+ .||+++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEee
Confidence 999999999999999999999999875 3578999999997443 4577664
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=334.08 Aligned_cols=204 Identities=25% Similarity=0.428 Sum_probs=166.4
Q ss_pred ceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------- 696 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------------- 696 (1513)
..++++|+++.|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 45899999999963 47999999999999999999999999999999999999999999998872
Q ss_pred -------------EEEEcCCCcccC-ccHHHHHccCC----CCCchH-HHHHHHHHhcHHHHhhccCCCCccc-cCCCCC
Q 000432 697 -------------KAYVPQSPWILT-GNIRENILFGN----QYDSCK-YDRTVEACALVKDFELFASGDLTEI-GERGIN 756 (1513)
Q Consensus 697 -------------~ayv~Q~~~l~~-~ti~eNI~fg~----~~~~~~-~~~v~~~~~l~~d~~~l~~Gd~T~I-ge~g~~ 756 (1513)
++||||++.++. .|++||+.++. ..+... .+++.+. ++.+ |..... .....+
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~------l~~~--gl~~~~~~~~~~~ 152 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKY------LAKV--GIDERAQGKYPVH 152 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHHc--CCChhhhhCCccc
Confidence 699999999987 49999998742 112111 1111111 1111 111222 455678
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCcccc-CCEEEEEeCCeEE
Q 000432 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPA-ADIILVMENGRIA 834 (1513)
Q Consensus 757 LSGGQkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~ 834 (1513)
||||||||++||||++++|+++||||||++||+.+.+.+.+ .+..+. +++|+|+|||+++.++. ||+|++|++|+++
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231 (257)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999887764 566554 48999999999999886 9999999999999
Q ss_pred EecChHHHHhc
Q 000432 835 QAGRFEELLKQ 845 (1513)
Q Consensus 835 ~~g~~~~l~~~ 845 (1513)
+.|+++++.+.
T Consensus 232 ~~~~~~~~~~~ 242 (257)
T PRK10619 232 EEGAPEQLFGN 242 (257)
T ss_pred EeCCHHHhhhC
Confidence 99999988643
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=334.98 Aligned_cols=206 Identities=25% Similarity=0.429 Sum_probs=169.4
Q ss_pred cceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccC-----CCcEEEECC--------
Q 000432 629 EFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQK-----MAGTVKISG-------- 695 (1513)
Q Consensus 629 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~-----~~G~i~~~g-------- 695 (1513)
...++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|.+++ ++|+|.++|
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999953 4799999999999999999999999999999999999874 899999876
Q ss_pred -------eEEEEcCCCcccCccHHHHHccCCCCC----ch----HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChH
Q 000432 696 -------TKAYVPQSPWILTGNIRENILFGNQYD----SC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGG 760 (1513)
Q Consensus 696 -------~~ayv~Q~~~l~~~ti~eNI~fg~~~~----~~----~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGG 760 (1513)
.++|++|++.+++.|++||+.++.... ++ +.+++++..++.+++ .+..+.++.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV-------KDRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH-------HHHhhCCcccCCHH
Confidence 258999999999899999998763211 11 122223333332222 13456778899999
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecCh
Q 000432 761 QKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRF 839 (1513)
Q Consensus 761 QkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~ 839 (1513)
|||||+||||++++|+++||||||++||+.+...+. +.+..+.+++|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~-~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 251 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIE-ELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDT 251 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCH
Confidence 999999999999999999999999999999977665 56666656799999999999875 5999999999999999999
Q ss_pred HHHHhc
Q 000432 840 EELLKQ 845 (1513)
Q Consensus 840 ~~l~~~ 845 (1513)
+++.+.
T Consensus 252 ~~~~~~ 257 (272)
T PRK14236 252 DTLFTS 257 (272)
T ss_pred HHHhcC
Confidence 888643
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=363.91 Aligned_cols=211 Identities=22% Similarity=0.306 Sum_probs=178.8
Q ss_pred EEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCC--CCcEEEEcCeeCCCCChHH-hhhc
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP--TMGSIIIDNVDITKIGLHD-LRSR 1338 (1513)
Q Consensus 1262 I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep--~~G~I~IDGvdI~~i~l~~-LR~~ 1338 (1513)
|+++|++++|++ .++|+|+||++++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+... .|++
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 789999999964 3599999999999999999999999999999999999987 7999999999998877655 4678
Q ss_pred eEEEcCCCccccC-cHhhccCCCCC-------CC----HHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHH
Q 000432 1339 LGIIPQDPTLFDG-TVRGNLDPLVQ-------YS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQL 1406 (1513)
Q Consensus 1339 isiVpQdp~LF~g-TIR~NLdp~~~-------~s----deei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQr 1406 (1513)
++||||+|.+|.. |+++|+..... .+ ++++.++++..++.+.. .+.++ .+||||||||
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~----~~LSgG~~qr 149 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------VTRPV----GDYGGGQQQL 149 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------ccCch----hhCCHHHHHH
Confidence 9999999988875 99999964211 11 23456677777664311 12223 4699999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeEecChhHHH
Q 000432 1407 FCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1407 l~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
++|||||+++|+||+|||||++||+++.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|++++..
T Consensus 150 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (500)
T TIGR02633 150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS 229 (500)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC
Confidence 999999999999999999999999999999999998753 47899999999999976 9999999999999999887653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=330.30 Aligned_cols=203 Identities=30% Similarity=0.426 Sum_probs=164.6
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC----------------
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG---------------- 695 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g---------------- 695 (1513)
++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 789999999963 4799999999999999999999999999999999999999999998865
Q ss_pred -----eEEEEcCCCcccC-ccHHHHHccCC----CCCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHH
Q 000432 696 -----TKAYVPQSPWILT-GNIRENILFGN----QYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRI 765 (1513)
Q Consensus 696 -----~~ayv~Q~~~l~~-~ti~eNI~fg~----~~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi 765 (1513)
.++||+|++.++. .|++||+.++. ..+.+..++.++ +-++.+ |..........+||||||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~l~~~--gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARAR-----ELLAKV--GLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH-----HHHHHc--CCcchhhCChhhCChHHHHHH
Confidence 2699999998885 69999998752 111111111111 111221 222223456779999999999
Q ss_pred HHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHH
Q 000432 766 QIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELL 843 (1513)
Q Consensus 766 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~ 843 (1513)
+||||+..+|+++||||||++||+.+.+.+.+ ++..+. +++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLN-TIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999877764 565544 48999999999999865 9999999999999999999886
Q ss_pred hc
Q 000432 844 KQ 845 (1513)
Q Consensus 844 ~~ 845 (1513)
+.
T Consensus 233 ~~ 234 (250)
T PRK11264 233 AD 234 (250)
T ss_pred cC
Confidence 53
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=329.67 Aligned_cols=197 Identities=30% Similarity=0.459 Sum_probs=163.1
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC--------------eE
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--------------TK 697 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g--------------~~ 697 (1513)
++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 468999999963 4799999999999999999999999999999999999999999999987 26
Q ss_pred EEEcCCCcccCc-cHHHHHccCCCCC-ch---HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000432 698 AYVPQSPWILTG-NIRENILFGNQYD-SC---KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVY 772 (1513)
Q Consensus 698 ayv~Q~~~l~~~-ti~eNI~fg~~~~-~~---~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~ 772 (1513)
+|++|++.++.. |++||+.++.... .. .++++++..+ +..........+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999998876 9999998764321 11 1222222221 1112234556789999999999999999
Q ss_pred cCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHH
Q 000432 773 QDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEEL 842 (1513)
Q Consensus 773 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~--~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l 842 (1513)
++|+++||||||++||+.+.+.+. +.+....+ ++|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIG-RVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999999999977775 45655443 7899999999999875 999999999999999999887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=324.79 Aligned_cols=176 Identities=22% Similarity=0.391 Sum_probs=130.6
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHhhhceEEEcCCCc-cccCcHhhccCCCC--
Q 000432 1285 TFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPT-LFDGTVRGNLDPLV-- 1361 (1513)
Q Consensus 1285 ~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~LR~~isiVpQdp~-LF~gTIR~NLdp~~-- 1361 (1513)
+|..||.+||+||+|-||||++++|.|..+|++|+ ..+ -+++|=||--. -|+|||++-|.-..
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCCcHHHHHHHhhhh
Confidence 45668999999999999999999999999999998 222 25889999432 38999987663110
Q ss_pred CCCHHHHH-HHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 000432 1362 QYSDKQVW-EALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKI 1440 (1513)
Q Consensus 1362 ~~sdeei~-~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~ 1440 (1513)
.+.+.-.+ +.++ |-.++-.....-.+||||+.||++||-||.|++++.+||||+|.||.+..-.+-++
T Consensus 429 ~~~~s~~~~ei~~-----------pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakv 497 (591)
T COG1245 429 AFGSSYFKTEIVK-----------PLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKV 497 (591)
T ss_pred hcccchhHHhhcC-----------ccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHH
Confidence 01111111 1222 33333333444467999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCcEEEEeccChhhHhh-cCEEEEEeC--CEEeEecChhHHHh
Q 000432 1441 ISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSD--GRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1441 i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~--G~IvE~Gtp~eLl~ 1485 (1513)
||+.. .++|.++|-|++-.+.. +||++|.+. |+=-....|..+.+
T Consensus 498 IRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr~ 547 (591)
T COG1245 498 IRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMRE 547 (591)
T ss_pred HHHHHhhcCceEEEEecceehhhhhhceEEEEecCCCccCcCCCCccHHH
Confidence 98754 57899999999988866 999999963 22222334555543
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=334.98 Aligned_cols=205 Identities=22% Similarity=0.380 Sum_probs=168.6
Q ss_pred ceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCcc-----CCCcEEEECC---------
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQ-----KMAGTVKISG--------- 695 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~-----~~~G~i~~~g--------- 695 (1513)
..++++|+++.|+. +++|+|+||+|++|++++|+|+||||||||+++|.|+++ |++|+|.++|
T Consensus 23 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 23 VVFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred eEEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 36999999999963 479999999999999999999999999999999999987 6999999887
Q ss_pred ------eEEEEcCCCcccCccHHHHHccCCCC---Cch-HHH----HHHHHHhcHHHHhhccCCCCccccCCCCCCChHH
Q 000432 696 ------TKAYVPQSPWILTGNIRENILFGNQY---DSC-KYD----RTVEACALVKDFELFASGDLTEIGERGINMSGGQ 761 (1513)
Q Consensus 696 ------~~ayv~Q~~~l~~~ti~eNI~fg~~~---~~~-~~~----~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQ 761 (1513)
.++|++|++.++..|++|||.++... +++ ..+ +.++..++..++ .......+.+|||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-------~~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL-------KDRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchH-------HHHHhcCcccCCHHH
Confidence 26999999999999999999875321 111 111 111111111112 233456778999999
Q ss_pred HHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChH
Q 000432 762 KQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFE 840 (1513)
Q Consensus 762 kqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~ 840 (1513)
|||++||||++++|+++||||||++||+.+.+.+. +.+..+.+++|+|++||+++++.. ||+|++|++|++++.|+++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVE-ELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999987775 466666668999999999999765 9999999999999999999
Q ss_pred HHHhc
Q 000432 841 ELLKQ 845 (1513)
Q Consensus 841 ~l~~~ 845 (1513)
++...
T Consensus 252 ~~~~~ 256 (271)
T PRK14238 252 KIFSN 256 (271)
T ss_pred HHHcC
Confidence 88654
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=333.74 Aligned_cols=201 Identities=24% Similarity=0.332 Sum_probs=165.6
Q ss_pred cceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe------------
Q 000432 629 EFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------ 696 (1513)
Q Consensus 629 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------------ 696 (1513)
+..++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 9 ~~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (265)
T PRK10575 9 DTTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85 (265)
T ss_pred CceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhh
Confidence 346999999999963 47999999999999999999999999999999999999999999999882
Q ss_pred -EEEEcCCCcccC-ccHHHHHccCCC-C-------C---chHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHH
Q 000432 697 -KAYVPQSPWILT-GNIRENILFGNQ-Y-------D---SCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQ 763 (1513)
Q Consensus 697 -~ayv~Q~~~l~~-~ti~eNI~fg~~-~-------~---~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkq 763 (1513)
++|++|++-++. .|+.||+.++.. . . .++.++.++.+++.+.+ .....+|||||||
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~q 154 (265)
T PRK10575 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLA-----------HRLVDSLSGGERQ 154 (265)
T ss_pred heEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-----------cCCcccCCHHHHH
Confidence 699999986665 499999997631 1 1 11233344444443222 2334579999999
Q ss_pred HHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChH
Q 000432 764 RIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFE 840 (1513)
Q Consensus 764 Ri~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~ 840 (1513)
|++||||+..+|+++||||||++||+.+.+.+. +.+..+. .++|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~~~-~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~ 233 (265)
T PRK10575 155 RAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVL-ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPA 233 (265)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHH
Confidence 999999999999999999999999999977765 4565553 3789999999999986 59999999999999999998
Q ss_pred HHHh
Q 000432 841 ELLK 844 (1513)
Q Consensus 841 ~l~~ 844 (1513)
++.+
T Consensus 234 ~~~~ 237 (265)
T PRK10575 234 ELMR 237 (265)
T ss_pred HhcC
Confidence 8764
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=296.93 Aligned_cols=217 Identities=29% Similarity=0.441 Sum_probs=188.6
Q ss_pred eEEEEEEEEEEcCCCCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCC----------
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKI---------- 1330 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i---------- 1330 (1513)
.++.+|+..+|.+. .||||||++.++|+.|.|+|.|||||||+++++-=+-.|+.|+|.++|..|...
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 68999999999876 499999999999999999999999999999999999999999999999877542
Q ss_pred ---ChHHhhhceEEEcCCCcccc-CcHhhccC--CC---CCCCHH---HHHHHHHHcCCcHHHHhhhccccchhccCCCC
Q 000432 1331 ---GLHDLRSRLGIIPQDPTLFD-GTVRGNLD--PL---VQYSDK---QVWEALDKCQLGDLVRAKEEKLDSTVAENGEN 1398 (1513)
Q Consensus 1331 ---~l~~LR~~isiVpQdp~LF~-gTIR~NLd--p~---~~~sde---ei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~n 1398 (1513)
.++.+|+++++|+|.--|++ .|+-+|.- |. +.-.+| .-..-|.++|+.+-.+.-| ..
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----------~~ 152 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP-----------AH 152 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------cc
Confidence 35678999999999999996 59999983 42 222223 2344577888877554443 46
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-cCEEEEEeCCEEeE
Q 000432 1399 WSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAE 1476 (1513)
Q Consensus 1399 LSgGQRQrl~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~IvE 1476 (1513)
|||||+||.+|||||.-+|+++++|||||+||++--..+.+.|++.. .++|.++|||-+...++ +..|+.|++|+|.|
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 89999999999999999999999999999999999999888888765 58999999999999998 89999999999999
Q ss_pred ecChhHHHhcCChH
Q 000432 1477 YDSPTKLLEREDSF 1490 (1513)
Q Consensus 1477 ~Gtp~eLl~~~~~~ 1490 (1513)
.|+|+++..++.|.
T Consensus 233 ~G~P~qvf~nP~S~ 246 (256)
T COG4598 233 EGPPEQVFGNPQSP 246 (256)
T ss_pred cCChHHHhcCCCCH
Confidence 99999999998763
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=348.50 Aligned_cols=200 Identities=26% Similarity=0.498 Sum_probs=167.1
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------E
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------K 697 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------~ 697 (1513)
.++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|.|+++|.+|+|.++|. +
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4889999999963 57999999999999999999999999999999999999999999999882 6
Q ss_pred EEEcCCCcc-cCccHHHHHccCCC-----CC---c---hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHH
Q 000432 698 AYVPQSPWI-LTGNIRENILFGNQ-----YD---S---CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRI 765 (1513)
Q Consensus 698 ayv~Q~~~l-~~~ti~eNI~fg~~-----~~---~---~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi 765 (1513)
+||+|++.+ ++.|++||+.++.. +. . ++.++.++..++.+. ......+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~-----------~~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQF-----------ADRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHH
Confidence 999999987 57899999998752 11 1 122333333333221 1234568999999999
Q ss_pred HHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHHHH
Q 000432 766 QIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELL 843 (1513)
Q Consensus 766 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~l~ 843 (1513)
+|||||+++|+++||||||++||+.+...+. +.++.+. +++|+|++||+++.+. .||+|++|++|++++.|++++++
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~-~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTL-ELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999977776 4565553 5789999999999985 59999999999999999999987
Q ss_pred hc
Q 000432 844 KQ 845 (1513)
Q Consensus 844 ~~ 845 (1513)
..
T Consensus 228 ~~ 229 (402)
T PRK09536 228 TA 229 (402)
T ss_pred Cc
Confidence 64
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=335.09 Aligned_cols=201 Identities=25% Similarity=0.328 Sum_probs=165.1
Q ss_pred ceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------- 696 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------------- 696 (1513)
..++++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 35899999999953 47999999999999999999999999999999999999999999998872
Q ss_pred ---EEEEcCCCcccCc-cHHHHHccCCC----CCchH----HHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHH
Q 000432 697 ---KAYVPQSPWILTG-NIRENILFGNQ----YDSCK----YDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQR 764 (1513)
Q Consensus 697 ---~ayv~Q~~~l~~~-ti~eNI~fg~~----~~~~~----~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqR 764 (1513)
++|++|++.++.. |++||+.++.. .+.+. ..+.++..++. ........+||||||||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgGq~qr 151 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR-----------GAAKLMPSELSGGMARR 151 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHH
Confidence 6899999999876 99999987521 12211 11122222221 12233456899999999
Q ss_pred HHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000432 765 IQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEE 841 (1513)
Q Consensus 765 i~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~ 841 (1513)
++||||++++|+++||||||++||+.+.+.+. +.+..+. .++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLV-KLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQA 230 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999977775 4565553 27899999999998765 99999999999999999999
Q ss_pred HHhc
Q 000432 842 LLKQ 845 (1513)
Q Consensus 842 l~~~ 845 (1513)
+.+.
T Consensus 231 ~~~~ 234 (269)
T PRK11831 231 LQAN 234 (269)
T ss_pred HhcC
Confidence 8764
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=326.84 Aligned_cols=203 Identities=22% Similarity=0.365 Sum_probs=165.1
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe--------------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------- 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------- 696 (1513)
-++++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4889999999963 57999999999999999999999999999999999999999999999873
Q ss_pred EEEEcCCCcccCc-cHHHHHccCCCC-CchHHHH-HHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhc
Q 000432 697 KAYVPQSPWILTG-NIRENILFGNQY-DSCKYDR-TVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQ 773 (1513)
Q Consensus 697 ~ayv~Q~~~l~~~-ti~eNI~fg~~~-~~~~~~~-v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~ 773 (1513)
++|++|++.++.+ |++||+.++... +.+..++ +.+......++. + ........||||||||++||||++.
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~------~-~~~~~~~~LS~G~~qrl~la~al~~ 154 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLH------E-RRIQRAGTMSGGEQQMLAIGRALMS 154 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHH------H-HHhCchhhCCHHHHHHHHHHHHHHh
Confidence 6899999998875 999999886532 2222222 111111111111 1 1233567899999999999999999
Q ss_pred CCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 000432 774 DADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELLK 844 (1513)
Q Consensus 774 ~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~l~~ 844 (1513)
+|+|+||||||++||+.+.+.+.+ .+..+. +++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 155 ~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 155 QPRLLLLDEPSLGLAPIIIQQIFD-TIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCCEEEEcCccccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999877765 555543 5899999999998765 599999999999999999998864
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=324.17 Aligned_cols=191 Identities=27% Similarity=0.440 Sum_probs=156.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC---------eEEEEcC
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG---------TKAYVPQ 702 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g---------~~ayv~Q 702 (1513)
++++|+++.|+. +++++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 468899999952 4799999999999999999999999999999999999999999999988 3799999
Q ss_pred CCcccCc-cHHHHHccCCCC---Cch----HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcC
Q 000432 703 SPWILTG-NIRENILFGNQY---DSC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQD 774 (1513)
Q Consensus 703 ~~~l~~~-ti~eNI~fg~~~---~~~----~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~ 774 (1513)
++.++.+ |++||+.++... +.. +..+.++..++ .........+||||||||++||||++.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLEL-----------SEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC-----------hHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 9988864 999999875321 111 11222222222 2233455678999999999999999999
Q ss_pred CCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEec
Q 000432 775 ADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAG 837 (1513)
Q Consensus 775 ~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g 837 (1513)
|+++||||||++||+.+.+.+.+ .+.... +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKD-VIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999887765 455443 57899999999998765 9999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=325.83 Aligned_cols=188 Identities=27% Similarity=0.438 Sum_probs=154.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe---------------
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT--------------- 696 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~--------------- 696 (1513)
++++|++++|+.. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4688999999632 47999999999999999999999999999999999999999999998873
Q ss_pred -EEEEcCCCcccC-ccHHHHHccCCC---CCch----HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 000432 697 -KAYVPQSPWILT-GNIRENILFGNQ---YDSC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQI 767 (1513)
Q Consensus 697 -~ayv~Q~~~l~~-~ti~eNI~fg~~---~~~~----~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~l 767 (1513)
++|++|++.++. .|++||+.++.. .+.+ +.++.++.+++.+. ......+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHK-----------HRALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCChhhcCHHHHHHHHH
Confidence 699999998887 599999987632 1111 22233333333322 223445899999999999
Q ss_pred HHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCcccc-CCEEEEEeCCeE
Q 000432 768 ARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPA-ADIILVMENGRI 833 (1513)
Q Consensus 768 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~~-~d~i~vl~~G~i 833 (1513)
|||++.+|+++||||||++||+++.+.+.+ .+..+. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~-~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMN-LLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999777764 565543 57999999999999875 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=326.54 Aligned_cols=194 Identities=29% Similarity=0.413 Sum_probs=158.9
Q ss_pred eEEEEeEEEEeCCCCC-CCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC--------------
Q 000432 631 EVEVVNGKFSWNPESS-SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG-------------- 695 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g-------------- 695 (1513)
.++++|++++|+.... .++|+|+||+|++|++++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999964322 3699999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEcCCCcccCc-cHHHHHccCCC---CCc----hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHH
Q 000432 696 ---TKAYVPQSPWILTG-NIRENILFGNQ---YDS----CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQR 764 (1513)
Q Consensus 696 ---~~ayv~Q~~~l~~~-ti~eNI~fg~~---~~~----~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqR 764 (1513)
.++|++|++.++.. |++||+.++.. .++ ++.++.++.+++.+.. .....+||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRL-----------DHLPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hCChhhCCHHHHHH
Confidence 37899999988875 99999987421 111 2233344444443322 23345899999999
Q ss_pred HHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccccCCEEEEEeCCeEEEe
Q 000432 765 IQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPAADIILVMENGRIAQA 836 (1513)
Q Consensus 765 i~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~ 836 (1513)
++||||++++|+++||||||++||+.+.+.+.+ .+..+. .++|+|++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIAD-LLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999777754 565543 37899999999998888999999999999753
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=322.59 Aligned_cols=189 Identities=30% Similarity=0.445 Sum_probs=155.6
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-----------EEEE
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-----------KAYV 700 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-----------~ayv 700 (1513)
|+++|++++|+. +. .|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 468999999963 22 3999999999999999999999999999999999999999999883 6999
Q ss_pred cCCCcccCc-cHHHHHccCCCC----C---chHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000432 701 PQSPWILTG-NIRENILFGNQY----D---SCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVY 772 (1513)
Q Consensus 701 ~Q~~~l~~~-ti~eNI~fg~~~----~---~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~ 772 (1513)
+|++.++.+ |++||+.++... . +++.+++++.+++.+..+ ....+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEK-----------RLPGELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHHHHHh
Confidence 999999875 999999876421 1 122334444444433222 334589999999999999999
Q ss_pred cCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEec
Q 000432 773 QDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAG 837 (1513)
Q Consensus 773 ~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g 837 (1513)
++|+++||||||++||+++.+.+. +.+..+. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEML-DLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999987775 4565553 37899999999999865 9999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=334.04 Aligned_cols=201 Identities=28% Similarity=0.477 Sum_probs=166.7
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------E
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------K 697 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------~ 697 (1513)
-++++|++++|+.+ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999632 46999999999999999999999999999999999999999999999873 6
Q ss_pred EEEcCCC--cccCccHHHHHccCCC---CCchH----HHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHH
Q 000432 698 AYVPQSP--WILTGNIRENILFGNQ---YDSCK----YDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIA 768 (1513)
Q Consensus 698 ayv~Q~~--~l~~~ti~eNI~fg~~---~~~~~----~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lA 768 (1513)
+||+|+| .+++.|++||+.++.. .+++. .++.++.+++.+.. ......||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELR-----------DRVPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCCcccCCHHHHHHHHHH
Confidence 9999998 3678899999987542 33322 23334444443322 234468999999999999
Q ss_pred HHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHHHHhc
Q 000432 769 RAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 769 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
||++.+|+++||||||++||+.+.+.+. +.++.+. .++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELI-DFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999977775 4565543 2799999999999985 5999999999999999999998754
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=371.09 Aligned_cols=213 Identities=25% Similarity=0.363 Sum_probs=186.1
Q ss_pred eEEEEEEEEEEcCC--CCcceeeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEcCeeCCCCChHHh---
Q 000432 1261 TISFHNLQIRYAEH--LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL--- 1335 (1513)
Q Consensus 1261 ~I~f~nvsf~Y~~~--~~~vLk~is~~I~~GekvgIVGrTGSGKSTLl~lL~rl~ep~~G~I~IDGvdI~~i~l~~L--- 1335 (1513)
.|+++|++++|+.+ .+++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.+||.++.+.+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 48999999999643 2469999999999999999999999999999999999999999999999999999887764
Q ss_pred -hhceEEEcCCCccccC-cHhhccCCC---CCC----CHHHHHHHHHHcCCcHHHHhhhccccchhccCCCCCChhHHHH
Q 000432 1336 -RSRLGIIPQDPTLFDG-TVRGNLDPL---VQY----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQL 1406 (1513)
Q Consensus 1336 -R~~isiVpQdp~LF~g-TIR~NLdp~---~~~----sdeei~~aL~~~~l~~~I~~lp~gLdt~V~e~G~nLSgGQRQr 1406 (1513)
|++++++||+|.+|++ |+.||++.. ... .++++.+.++..++.+..... ..+||+|||||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~-----------~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQ-----------PSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCC-----------cccCCHHHHHH
Confidence 6789999999999975 999999631 111 123456677777766544333 35799999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhcCEEEEEeCCEEeEecChhHHH
Q 000432 1407 FCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLL 1484 (1513)
Q Consensus 1407 l~LARALLr~~~ILiLDEaTSslD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVLd~G~IvE~Gtp~eLl 1484 (1513)
++|||||+++|++|+|||||++||.++.+.+.+.|++.. +++|+|+|+|+++.+..||++++|++|++++.|+++|..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999999998764 479999999999999889999999999999999999886
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=331.38 Aligned_cols=198 Identities=26% Similarity=0.448 Sum_probs=164.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------EE
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------KA 698 (1513)
Q Consensus 632 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------~a 698 (1513)
++++|++++|++ +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|. ++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 47999999999999999999999999999999999999999999999873 69
Q ss_pred EEcCCCcccCc-cHHHHHccCCC-----CC--ch----HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 000432 699 YVPQSPWILTG-NIRENILFGNQ-----YD--SC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766 (1513)
Q Consensus 699 yv~Q~~~l~~~-ti~eNI~fg~~-----~~--~~----~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~ 766 (1513)
|++|++.++.+ |+.||+.++.. +. .+ +.++.++.+++.+ ........||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH-----------LADRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHH-----------HHcCCcccCCHHHHHHHH
Confidence 99999988866 99999998631 11 11 1222233333322 223456789999999999
Q ss_pred HHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 000432 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELLK 844 (1513)
Q Consensus 767 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~l~~ 844 (1513)
||||+.++|+++||||||++||+++.+.+.+ .+..+. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMR-LMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999777754 555543 4799999999999876 499999999999999999988764
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=326.95 Aligned_cols=202 Identities=28% Similarity=0.418 Sum_probs=156.5
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC---------------
Q 000432 632 VEVVNGKFSWNPES-SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--------------- 695 (1513)
Q Consensus 632 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g--------------- 695 (1513)
++++|++++|+... ..++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 67899999996321 13799999999999999999999999999999999999999999999877
Q ss_pred -eEEEEcCCCc--cc-CccHHHHHccCCCC-CchHHHHHHHHHhcHHHHhhccCCC-CccccCCCCCCChHHHHHHHHHH
Q 000432 696 -TKAYVPQSPW--IL-TGNIRENILFGNQY-DSCKYDRTVEACALVKDFELFASGD-LTEIGERGINMSGGQKQRIQIAR 769 (1513)
Q Consensus 696 -~~ayv~Q~~~--l~-~~ti~eNI~fg~~~-~~~~~~~v~~~~~l~~d~~~l~~Gd-~T~Ige~g~~LSGGQkqRi~lAR 769 (1513)
.++|++|++. ++ ..|++||+.++... .....++..+.. ..+.++.+ |. .........+||||||||++|||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~-~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~lar 158 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA-VLLLLVGV--GLPEEVLNRYPHELSGGQRQRVAIAR 158 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH-HHHHHHHC--CCChhHhhCCchhcCHHHHHHHHHHH
Confidence 2689999993 34 57999999864211 000000111110 01112222 22 12345667889999999999999
Q ss_pred HHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCCCccc-cCCEEEEEeCCeEEEec
Q 000432 770 AVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DKSVLYVTHQVEFLP-AADIILVMENGRIAQAG 837 (1513)
Q Consensus 770 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~--~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g 837 (1513)
|++++|+++||||||++||+++.+.+. +.+..+.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 159 ALALNPKLLIADEPTSALDVSVQAQIL-DLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999977775 45655543 799999999999887 59999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=332.80 Aligned_cols=204 Identities=25% Similarity=0.426 Sum_probs=165.9
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCcc-----CCCcEEEECC----------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQ-----KMAGTVKISG---------- 695 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~-----~~~G~i~~~g---------- 695 (1513)
.-+++|+++.|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 5 ~~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 5 HASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred EEEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 3468899999962 579999999999999999999999999999999999986 4799999877
Q ss_pred -----eEEEEcCCCcccCccHHHHHccCCCC-----CchHHH----HHHHHHhcHHHHhhccCCCCccccCCCCCCChHH
Q 000432 696 -----TKAYVPQSPWILTGNIRENILFGNQY-----DSCKYD----RTVEACALVKDFELFASGDLTEIGERGINMSGGQ 761 (1513)
Q Consensus 696 -----~~ayv~Q~~~l~~~ti~eNI~fg~~~-----~~~~~~----~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQ 761 (1513)
.++|++|++.++.+|++||+.++... +.+.++ ++++..++.+++ .+.++..+.+|||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq 154 (251)
T PRK14244 82 VLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQ 154 (251)
T ss_pred HHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHH
Confidence 26899999999999999999876321 111121 222222221111 123455678999999
Q ss_pred HHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChH
Q 000432 762 KQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFE 840 (1513)
Q Consensus 762 kqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~ 840 (1513)
|||++||||++++|+++||||||++||+.+.+.+. +.+..+.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (251)
T PRK14244 155 QQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIE-NLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQ 233 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999877665 567666668999999999999865 9999999999999999998
Q ss_pred HHHhc
Q 000432 841 ELLKQ 845 (1513)
Q Consensus 841 ~l~~~ 845 (1513)
++.+.
T Consensus 234 ~~~~~ 238 (251)
T PRK14244 234 EIFKN 238 (251)
T ss_pred HHhcC
Confidence 88654
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=334.47 Aligned_cols=205 Identities=22% Similarity=0.353 Sum_probs=169.3
Q ss_pred ceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccC-----CCcEEEECC---------
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQK-----MAGTVKISG--------- 695 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~-----~~G~i~~~g--------- 695 (1513)
..++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 20 ~~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 20 PAMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred cEEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 35899999999963 5799999999999999999999999999999999999985 699999877
Q ss_pred -----eEEEEcCCCcccCccHHHHHccCCCC----CchHHHH----HHHHHhcHHHHhhccCCCCccccCCCCCCChHHH
Q 000432 696 -----TKAYVPQSPWILTGNIRENILFGNQY----DSCKYDR----TVEACALVKDFELFASGDLTEIGERGINMSGGQK 762 (1513)
Q Consensus 696 -----~~ayv~Q~~~l~~~ti~eNI~fg~~~----~~~~~~~----v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQk 762 (1513)
.++|++|++.+++.|++|||.++... +.+.+++ .++.+++ .+...+.....+.+||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~l~~~~~~LSgGq~ 169 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGL-------WDAVKDRLSDSPFRLSGGQQ 169 (276)
T ss_pred HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCC-------CchhhhHhhCCcccCCHHHH
Confidence 25899999999999999999986321 2222221 1222222 11122345567789999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000432 763 QRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEE 841 (1513)
Q Consensus 763 qRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~ 841 (1513)
||++||||++++|+++||||||++||+.+.+.+++ .+..+.+++|+|+|||+++.+.. ||++++|++|++++.|+.++
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEE-FIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999877764 56655556899999999998765 99999999999999999999
Q ss_pred HHhc
Q 000432 842 LLKQ 845 (1513)
Q Consensus 842 l~~~ 845 (1513)
+.+.
T Consensus 249 ~~~~ 252 (276)
T PRK14271 249 LFSS 252 (276)
T ss_pred HHhC
Confidence 8754
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=332.95 Aligned_cols=206 Identities=23% Similarity=0.378 Sum_probs=166.1
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------E
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------K 697 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------~ 697 (1513)
.++++|++++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|.+|+|.++|. +
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999642 246999999999999999999999999999999999999999999999883 5
Q ss_pred EEEcCCCc--ccCccHHHHHccCCCC---CchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000432 698 AYVPQSPW--ILTGNIRENILFGNQY---DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVY 772 (1513)
Q Consensus 698 ayv~Q~~~--l~~~ti~eNI~fg~~~---~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~ 772 (1513)
+|++|+|+ +...|+++|+.|+... ..+...+.+ ..+.+.+.. ......+..+||||||||++||||++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~l-----~~~~~~~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRV--SEALKQVDM-----LERADYEPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHH--HHHHHHcCC-----chhhhCCcccCCHHHHHHHHHHHHHH
Confidence 89999995 4567899999987431 222221111 111111111 11123456789999999999999999
Q ss_pred cCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000432 773 QDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 773 ~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~~~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
.+|+++||||||++||+.+.+.+++ .++.+. .++|+|+|||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 159 ~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 159 LNPSVIILDEATSMLDPDARQNLLD-LVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999887764 565553 37899999999998878999999999999999999988654
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=328.84 Aligned_cols=203 Identities=24% Similarity=0.323 Sum_probs=163.9
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe--------------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------- 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~-------------- 696 (1513)
.++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999963 47999999999999999999999999999999999999999999998763
Q ss_pred -----EEEEcCCCcccCc-cHHHHHccCC-C---CCchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 000432 697 -----KAYVPQSPWILTG-NIRENILFGN-Q---YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766 (1513)
Q Consensus 697 -----~ayv~Q~~~l~~~-ti~eNI~fg~-~---~~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~ 766 (1513)
++|++|++.++.+ |++|||.++. . ...+...+. ..+-++.+ |....+.....+||||||||++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALAR-----AEKLLERL--RLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CChhhhhCChhhCCHHHHHHHH
Confidence 5899999998865 9999997431 1 111111110 01111221 2233344556789999999999
Q ss_pred HHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000432 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLK 844 (1513)
Q Consensus 767 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~ 844 (1513)
||||++.+|+++||||||++||+.+.+.+.+ .++.+. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVS-IIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 9999999999999999999999999877764 566554 48999999999999865 99999999999999999888653
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=326.21 Aligned_cols=197 Identities=25% Similarity=0.381 Sum_probs=162.0
Q ss_pred ceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe-------------
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------- 696 (1513)
Q Consensus 630 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------------- 696 (1513)
..|+++|+++.|+. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 6 PLLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred ceEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 35899999999962 47999999999999999999999999999999999999999999999873
Q ss_pred EEEEcCCCcccCccHHHHHccCCCCC-----chHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000432 697 KAYVPQSPWILTGNIRENILFGNQYD-----SCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAV 771 (1513)
Q Consensus 697 ~ayv~Q~~~l~~~ti~eNI~fg~~~~-----~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal 771 (1513)
++|++|++++++.|++||+.++..+. +++.++.++..++. .+.......+||||||||++||||+
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP----------DTILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC----------hHHhcCCcccCCHHHHHHHHHHHHH
Confidence 69999999999999999998753211 11112222222221 1234566789999999999999999
Q ss_pred hcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccccCCEEEEEe-CCeEEEecChH
Q 000432 772 YQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPAADIILVME-NGRIAQAGRFE 840 (1513)
Q Consensus 772 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~~~d~i~vl~-~G~i~~~g~~~ 840 (1513)
+++|+++||||||++||+.+.+.+. +++..+. .++|+|++||+++.++.||+|++|+ ++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVN-EIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999977665 4566553 3789999999999998899999994 67777888874
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=330.55 Aligned_cols=204 Identities=26% Similarity=0.396 Sum_probs=165.4
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccC-----CCcEEEECCe---------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQK-----MAGTVKISGT--------- 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~-----~~G~i~~~g~--------- 696 (1513)
.++++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|.|+++| ++|+|.++|.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4889999999963 4799999999999999999999999999999999999974 6999999873
Q ss_pred ----EEEEcCCCccc-CccHHHHHccCCCC-----CchHH----HHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHH
Q 000432 697 ----KAYVPQSPWIL-TGNIRENILFGNQY-----DSCKY----DRTVEACALVKDFELFASGDLTEIGERGINMSGGQK 762 (1513)
Q Consensus 697 ----~ayv~Q~~~l~-~~ti~eNI~fg~~~-----~~~~~----~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQk 762 (1513)
++|++|++.++ +.|++||+.++... +.+.+ .+.++.+++.+.+ .........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-------KDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCCcccCCHHHH
Confidence 68999999755 67999999876421 11111 2222333322111 1123445678999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHH
Q 000432 763 QRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEE 841 (1513)
Q Consensus 763 qRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~ 841 (1513)
||++||||+.++|+++||||||++||+.+.+.+.+ .+..+.+++|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIES-LFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 99999999999999999999999999999877764 5665556899999999999875 599999999999999999998
Q ss_pred HHhc
Q 000432 842 LLKQ 845 (1513)
Q Consensus 842 l~~~ 845 (1513)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14247 232 VFTN 235 (250)
T ss_pred HHcC
Confidence 8653
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=330.97 Aligned_cols=204 Identities=24% Similarity=0.408 Sum_probs=165.8
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccC-----CCcEEEECCe---------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQK-----MAGTVKISGT--------- 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~-----~~G~i~~~g~--------- 696 (1513)
.++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 5889999999963 4799999999999999999999999999999999999987 4999998762
Q ss_pred ------EEEEcCCCcccCc-cHHHHHccCCCC-----CchHH----HHHHHHHhcHHHHhhccCCCCccccCCCCCCChH
Q 000432 697 ------KAYVPQSPWILTG-NIRENILFGNQY-----DSCKY----DRTVEACALVKDFELFASGDLTEIGERGINMSGG 760 (1513)
Q Consensus 697 ------~ayv~Q~~~l~~~-ti~eNI~fg~~~-----~~~~~----~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGG 760 (1513)
++|++|++.++.. |++||+.++... +.+.. +++++..++.+++ .........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV-------KDRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch-------hhhhccChhhCCHH
Confidence 5899999999875 999999875321 11111 1122222221111 12235567799999
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecCh
Q 000432 761 QKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRF 839 (1513)
Q Consensus 761 QkqRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~ 839 (1513)
||||++||||++++|+++||||||++||+.+.+.+. +.+..+.+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIE-ELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999987776 456665567999999999998764 999999999999999999
Q ss_pred HHHHhc
Q 000432 840 EELLKQ 845 (1513)
Q Consensus 840 ~~l~~~ 845 (1513)
+++.+.
T Consensus 233 ~~~~~~ 238 (253)
T PRK14267 233 RKVFEN 238 (253)
T ss_pred HHHHhC
Confidence 988654
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=330.71 Aligned_cols=203 Identities=23% Similarity=0.386 Sum_probs=167.1
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccC-----CCcEEEECCe---------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQK-----MAGTVKISGT--------- 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~-----~~G~i~~~g~--------- 696 (1513)
.++++|+++.|+. +++|+|+||+|++|++++|+|+||||||||+++|+|..+| ++|+|.++|.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4789999999963 5799999999999999999999999999999999999986 5999998772
Q ss_pred -----EEEEcCCCcccCccHHHHHccCCCC---C-chHH----HHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHH
Q 000432 697 -----KAYVPQSPWILTGNIRENILFGNQY---D-SCKY----DRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQ 763 (1513)
Q Consensus 697 -----~ayv~Q~~~l~~~ti~eNI~fg~~~---~-~~~~----~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkq 763 (1513)
++|++|++.++..|++||+.++... . ++.. .+.++..++.+++ .+.......+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHH
Confidence 5899999999999999999986421 1 1111 1222222332222 13345667789999999
Q ss_pred HHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHH
Q 000432 764 RIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEEL 842 (1513)
Q Consensus 764 Ri~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l 842 (1513)
||+||||++.+|+++||||||++||+++.+.+. +.+..+.+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIE-ELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999977665 467666667999999999999776 999999999999999998887
Q ss_pred Hh
Q 000432 843 LK 844 (1513)
Q Consensus 843 ~~ 844 (1513)
.+
T Consensus 232 ~~ 233 (249)
T PRK14253 232 FS 233 (249)
T ss_pred Hc
Confidence 54
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=341.88 Aligned_cols=206 Identities=27% Similarity=0.451 Sum_probs=166.5
Q ss_pred cceEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECCe------------
Q 000432 629 EFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------ 696 (1513)
Q Consensus 629 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g~------------ 696 (1513)
...|+++|++++|+. ..+|+|+||+|++|++++++||||||||||+++|+|+++|++|+|.++|.
T Consensus 39 ~~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 39 TVAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred ceeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhcc
Confidence 346999999999963 46999999999999999999999999999999999999999999999883
Q ss_pred EEEEcCCCccc-CccHHHHHcc-CCCC--CchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHh
Q 000432 697 KAYVPQSPWIL-TGNIRENILF-GNQY--DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVY 772 (1513)
Q Consensus 697 ~ayv~Q~~~l~-~~ti~eNI~f-g~~~--~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~ 772 (1513)
++||||++.++ ..|++||+.| +.-+ +....++.++ .+.+.+ .+++..++ +..+||||||||++||||+.
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~ll~~~-~L~~~~~~----~~~~LS~G~kqrv~lA~aL~ 188 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIP--SLLEFA-RLESKADA----RVSDLSGGMKRRLTLARALI 188 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHc-CCchhhCC----ChhhCCHHHHHHHHHHHHHh
Confidence 69999999886 5699999985 3211 2111111111 111111 22332333 34579999999999999999
Q ss_pred cCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000432 773 QDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 773 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
++|+++||||||++||+.+.+.+.+ .+..+. +|+|+|++||+++.+.. ||+|++|++|+++..|+.+++.+.
T Consensus 189 ~~P~lLiLDEPt~gLD~~~r~~l~~-~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 189 NDPQLLILDEPTTGLDPHARHLIWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999887764 565543 58999999999999865 999999999999999999998653
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=328.70 Aligned_cols=203 Identities=22% Similarity=0.349 Sum_probs=165.4
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC--------------e
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--------------T 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g--------------~ 696 (1513)
.++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|.|+++|++|+|.++| .
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3789999999963 4799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEcCCCcccC-ccHHHHHccCCCC----CchHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000432 697 KAYVPQSPWILT-GNIRENILFGNQY----DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAV 771 (1513)
Q Consensus 697 ~ayv~Q~~~l~~-~ti~eNI~fg~~~----~~~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal 771 (1513)
++|++|++.++. .|++||+.++... +++..++.+ .+-++.+ |..........+||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRA-----NELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHH-----HHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 699999998887 4999999876322 111111111 1112222 222334556779999999999999999
Q ss_pred hcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 000432 772 YQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELLK 844 (1513)
Q Consensus 772 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~l~~ 844 (1513)
+++|+++||||||++||+.+.+.+. +.+..+. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIK-RIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 9999999999999999999977765 4555543 4899999999998765 599999999999999999998864
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=329.83 Aligned_cols=204 Identities=24% Similarity=0.410 Sum_probs=169.8
Q ss_pred eEEEEeEEEEeCCCCCCCcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccC-----CCcEEEECCe---------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQK-----MAGTVKISGT--------- 696 (1513)
Q Consensus 631 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~-----~~G~i~~~g~--------- 696 (1513)
-++++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4889999999963 4799999999999999999999999999999999999875 7999998762
Q ss_pred ------EEEEcCCCcccCccHHHHHccCCCC----Cc----hHHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHH
Q 000432 697 ------KAYVPQSPWILTGNIRENILFGNQY----DS----CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQK 762 (1513)
Q Consensus 697 ------~ayv~Q~~~l~~~ti~eNI~fg~~~----~~----~~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQk 762 (1513)
++|++|++.++..|++||+.|+... +. ++.+++++.+++.++++ .........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHH
Confidence 6999999999999999999986421 11 12233444444432222 123456778999999
Q ss_pred HHHHHHHHHhcCCCEEEeeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000432 763 QRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEE 841 (1513)
Q Consensus 763 qRi~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~TvilvtH~~~~l~~-~d~i~vl~~G~i~~~g~~~~ 841 (1513)
||++||||++++|+|+||||||++||+.+...+. +.+..+.+++|+|+|||+++.+.. ||+|++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIE-DLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999987775 467666667999999999998765 99999999999999999998
Q ss_pred HHhc
Q 000432 842 LLKQ 845 (1513)
Q Consensus 842 l~~~ 845 (1513)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14270 233 IFLE 236 (251)
T ss_pred HhcC
Confidence 8654
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=348.05 Aligned_cols=186 Identities=27% Similarity=0.414 Sum_probs=155.3
Q ss_pred CcccceeEEEeCCcEEEEEecCCCcHHHHHHHHhcCccCCCcEEEECC-----------------eEEEEcCCCcccC-c
Q 000432 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG-----------------TKAYVPQSPWILT-G 709 (1513)
Q Consensus 648 ~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llg~~~~~~G~i~~~g-----------------~~ayv~Q~~~l~~-~ 709 (1513)
++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| .++||+|++.++. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 479999999999999999999999999999999999999999999987 3799999999986 5
Q ss_pred cHHHHHccCCC---CCch----HHHHHHHHHhcHHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCEEEeeC
Q 000432 710 NIRENILFGNQ---YDSC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDD 782 (1513)
Q Consensus 710 ti~eNI~fg~~---~~~~----~~~~v~~~~~l~~d~~~l~~Gd~T~Ige~g~~LSGGQkqRi~lARal~~~~~illLDe 782 (1513)
|++|||.|+.. ++.+ +..+.++.++|.+ .......+||||||||++||||++.+|+++||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~-----------~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLEN-----------YAHSYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh-----------hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999998642 2221 2223333333332 2233456899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCeEEEecChHHHHhc
Q 000432 783 PFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLP-AADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 783 p~salD~~~~~~i~~~~~~~~~--~~~TvilvtH~~~~l~-~~d~i~vl~~G~i~~~g~~~~l~~~ 845 (1513)
|||+||+.+.+.+.+ .+..+. .++|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 191 Pts~LD~~~r~~l~~-~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 191 AFSALDPLIRTEMQD-ELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CCccCCHHHHHHHHH-HHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999877764 555443 4899999999999875 5999999999999999999998765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1513 | ||||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 1e-60 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 1e-08 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-55 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-50 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 9e-25 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-49 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-24 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-44 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-04 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 3e-44 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 9e-05 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-43 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-06 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-43 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-06 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 3e-43 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 4e-05 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 3e-43 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 5e-05 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 3e-42 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 6e-04 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 5e-42 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 2e-06 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-41 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-05 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-41 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-05 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 2e-41 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-05 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 3e-41 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 7e-05 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 4e-39 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 5e-04 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-35 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 5e-33 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-32 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 7e-32 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 8e-31 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-29 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-29 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-23 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 4e-29 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 4e-28 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 7e-27 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-26 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-23 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-22 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-22 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-22 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-22 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-22 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-21 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-21 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-16 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-16 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-15 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-14 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 8e-12 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 7e-14 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-12 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 5e-12 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-11 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-11 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 4e-11 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 9e-04 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 7e-11 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-05 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 8e-11 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-05 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-10 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-04 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 1e-10 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-05 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 3e-10 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-06 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-10 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-09 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 6e-09 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 1e-08 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 1e-08 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-08 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-04 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 4e-08 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 4e-08 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 7e-08 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-07 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 9e-08 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-07 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 9e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 1e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 1e-07 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 1e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 6e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 3e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-07 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-07 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 7e-07 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 7e-07 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 8e-07 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-06 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-06 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 2e-06 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 3e-06 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 1e-05 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 1e-05 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-04 |
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 449 bits (1157), Expect = e-145
Identities = 86/250 (34%), Positives = 135/250 (54%), Gaps = 1/250 (0%)
Query: 1248 EECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQ 1307
+ WP G ++ +L +Y E ++L+NIS + ++VG++GRTGSGKSTL+
Sbjct: 6 SHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLS 65
Query: 1308 AIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQ 1367
A R++ G I ID V I L R G+IPQ +F GT R NLDP +SD++
Sbjct: 66 AFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQE 124
Query: 1368 VWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATA 1427
+W+ D+ L ++ KLD + + G S G +QL CL R++L K+ IL+LDE +A
Sbjct: 125 IWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSA 184
Query: 1428 SVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLERE 1487
+D T +I++ + Q F D TV+ RI +++ D LV+ + ++ +YDS +L
Sbjct: 185 HLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244
Query: 1488 DSFFSQLIKE 1497
F
Sbjct: 245 ADRFVAGFIG 254
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 1e-30
Identities = 64/318 (20%), Positives = 119/318 (37%), Gaps = 35/318 (11%)
Query: 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT 690
++ V + + + L+ I + G +V + G GSGKS+LLS L + G
Sbjct: 19 QMTVKDLTAKYTEGGN-AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR-LLNTEGE 76
Query: 691 VKISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVK 737
++I G +PQ +I +G R+N+ + + + + L
Sbjct: 77 IQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRS 136
Query: 738 DFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQL-- 795
E F + + G +S G KQ + +AR+V A I LLD+P + +D T +
Sbjct: 137 VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRR 196
Query: 796 -----FKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIG-F 849
F DC +V+ ++E + D LV+E ++ Q EL F
Sbjct: 197 TLKQAFADC--------TVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRF 248
Query: 850 EVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITE 909
+ + V ++ + EL + V L D + ++ +
Sbjct: 249 VAGFIGSPKMNFLPVKVTATAIDQV----QVELPMPNRQQVWLPVESRDVQVGANMSLGI 304
Query: 910 KGGKLVQEEEREKGSIGK 927
+ L+ + + G+
Sbjct: 305 RPEHLLPSDIADVILEGE 322
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 406 bits (1046), Expect = e-131
Identities = 91/285 (31%), Positives = 144/285 (50%), Gaps = 1/285 (0%)
Query: 597 AQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLK 656
+ +V + + A+ +E + + + FS +P L I K
Sbjct: 1 STTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFK 60
Query: 657 VKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENIL 716
++RG +A+ G+ G+GK+SLL I+GE++ G +K SG ++ Q+ WI+ G I+ENI+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII 120
Query: 717 FGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDAD 776
G YD +Y ++AC L +D FA D +GE GI +SGGQ+ RI +ARAVY+DAD
Sbjct: 121 -GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179
Query: 777 IYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQA 836
+YLLD PF +D T ++F+ C+ ++ +K+ + VT ++E L AD IL++ G
Sbjct: 180 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFY 239
Query: 837 GRFEELLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESE 881
G F EL F + + S T E
Sbjct: 240 GTFSELQNLRPDFSSKLMGCDSFDQFSAERRNSILTETLHRFSLE 284
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 4e-33
Identities = 57/286 (19%), Positives = 112/286 (39%), Gaps = 34/286 (11%)
Query: 1227 MISVERILQY--SNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISC 1284
+ +E + + + ++SF N + VLK+I+
Sbjct: 4 EVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLG----TPVLKDINF 59
Query: 1285 TFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQ 1344
+ + V G TG+GK++L+ I +EP+ G I R+ Q
Sbjct: 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH-------------SGRISFCSQ 106
Query: 1345 DPTLFDGTVRGNLDPL-VQYSDKQVWEALDKCQLG-DLVRAKEEKL---DST-VAENGEN 1398
+ + GT++ N+ + V Y + + + CQL D+ K D+ + E G
Sbjct: 107 NSWIMPGTIKENI--IGVSYDEYRYRSVIKACQLEEDI-----SKFAEKDNIVLGEGGIT 159
Query: 1399 WSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVI-QKIISQEFKDRTVVTIAHRI 1457
S GQR L R + K + + +LD +D T+ I + + + ++T + + ++
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 1458 HTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMRSQ 1503
+ +D +L+L +G Y + ++L FS + Q
Sbjct: 220 EHLKKADKILILHEGSSYFYGTFSELQNLRPD-FSSKLMGCDSFDQ 264
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 390 bits (1005), Expect = e-126
Identities = 91/228 (39%), Positives = 135/228 (59%), Gaps = 2/228 (0%)
Query: 628 SEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKM 687
+ EV + N W E +P L I K++RG +A+ G+ G+GK+SLL I+GE++
Sbjct: 3 TTTEVVMENVTAFWE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61
Query: 688 AGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDL 747
G +K SG ++ Q WI+ G I+ENI+FG YD +Y ++AC L +D FA D
Sbjct: 62 EGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDN 121
Query: 748 TEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK 807
+GE GI +SGGQ+ RI +ARAVY+DAD+YLLD PF +D T ++F+ C+ ++ +K
Sbjct: 122 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 181
Query: 808 SVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGF-EVLVG 854
+ + VT ++E L AD IL++ G G F EL F L+G
Sbjct: 182 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMG 229
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 2e-32
Identities = 55/244 (22%), Positives = 106/244 (43%), Gaps = 28/244 (11%)
Query: 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
+ N+ + E VLK+I+ + + V G TG+GK++L+ I +EP+ G
Sbjct: 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 64
Query: 1320 IIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPL--VQYSDKQVWEALDKCQL 1377
I R+ Q + GT++ N+ + V Y + + + CQL
Sbjct: 65 IKH-------------SGRISFCSQFSWIMPGTIKENI--IFGVSYDEYRYRSVIKACQL 109
Query: 1378 G-DLVRAKEEKL---DST-VAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSA 1432
D+ K D+ + E G S GQR L R + K + + +LD +D
Sbjct: 110 EEDI-----SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVL 164
Query: 1433 TDGVI-QKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFF 1491
T+ I + + + ++T + + ++ + +D +L+L +G Y + ++L + F
Sbjct: 165 TEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 224
Query: 1492 SQLI 1495
S+L+
Sbjct: 225 SKLM 228
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 390 bits (1004), Expect = e-126
Identities = 110/232 (47%), Positives = 154/232 (66%), Gaps = 3/232 (1%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
+ V N F+W S PTL+GI + G VA+ G VG GKSSLLS +L E+ K+ G V
Sbjct: 4 ITVRNATFTWAR-SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 692 KISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIG 751
I G+ AYVPQ WI ++RENILFG Q + Y ++ACAL+ D E+ SGD TEIG
Sbjct: 63 AIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIG 122
Query: 752 ERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCL--MGILKDKSV 809
E+G+N+SGGQKQR+ +ARAVY +ADIYL DDP SAVDAH G +F++ + G+LK+K+
Sbjct: 123 EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTR 182
Query: 810 LYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGAHSQALE 861
+ VTH + +LP D+I+VM G+I++ G ++ELL ++ F + ++
Sbjct: 183 ILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYASHHH 234
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 3e-32
Identities = 64/259 (24%), Positives = 120/259 (46%), Gaps = 33/259 (12%)
Query: 1259 VGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMG 1318
+ +I+ N +A P L I+ + P V VVG+ G GKS+L+ A+ ++ G
Sbjct: 1 MNSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 1319 SIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPL--VQYSDKQVWEALDKCQ 1376
+ I + + +PQ + + ++R N+ L Q + + C
Sbjct: 61 HVAI-------------KGSVAYVPQQAWIQNDSLRENI--LFGCQLEEPYYRSVIQACA 105
Query: 1377 LG-DLVRAKEEKL---DST-VAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDS 1431
L DL E L D T + E G N S GQ+Q L R + + I + D+ ++VD+
Sbjct: 106 LLPDL-----EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 160
Query: 1432 ATDG--VIQKIISQE--FKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLERE 1487
G + + +I + K++T + + H + + D+++V+S G+I+E S +LL R
Sbjct: 161 HV-GKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR- 218
Query: 1488 DSFFSQLIKEYSMRSQNFN 1506
D F++ ++ Y+ + +
Sbjct: 219 DGAFAEFLRTYASHHHHHH 237
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 409 bits (1052), Expect = e-120
Identities = 240/1322 (18%), Positives = 501/1322 (37%), Gaps = 158/1322 (11%)
Query: 283 SNRFEQDLDLVKEKEGSTNPSIYKAIFFFIRKK----AAINASFAVINAAT----SYVGP 334
N + KEK+ +F + + A+I+ +
Sbjct: 13 KNFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFG 72
Query: 335 YLINDFVNFLTDKKSRS--------------LESGYLLALAFLGAKMVETIAQRQWIFGA 380
+ + F + K+ + E A + G I +
Sbjct: 73 DMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFW 132
Query: 381 RQLGLRLRAALISHLYRKGLHLSSQSRQ------SHTSGEIINYMSVDVQRISDFIFYSN 434
R + + + Q H GE+ ++ DV +I++ I
Sbjct: 133 CLAAGRQIHKIRQKFFHAIM------NQEIGWFDVHDVGELNTRLTDDVSKINEGIG--- 183
Query: 435 YMFMLPVQISLAIYILRTNLGLG-------SLAALAATLTVMTCNIPITRIQKRFQSKIM 487
+ + +G +L LA + + +I F K +
Sbjct: 184 --DKIGMFFQAMATFF-GGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKEL 240
Query: 488 DAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKL-ESLRQVECIWLWKSLRLSATSAFIFW 546
A EVL ++T+ + L++ +L + + + + K++ + + F
Sbjct: 241 HAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAF- 299
Query: 547 GSPTFISVVT------FGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGK 600
+ + +G +++ + + G+VL+ + + + + A +
Sbjct: 300 ----LLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANAR 355
Query: 601 VSADRIAAYL-QEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKR 659
+A + + + I + + +E N FS+ L G+ LKVK
Sbjct: 356 GAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKS 415
Query: 660 GMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-------------AYVPQSPWI 706
G VA+ G G GKS+ + + + G V I G V Q P +
Sbjct: 416 GQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVL 475
Query: 707 LTGNIRENILFGNQYDSCKYDRTVEAC--ALVKDF-ELFASGDLTEIGERGINMSGGQKQ 763
I ENI +G + D +A A DF T +GERG +SGGQKQ
Sbjct: 476 FATTIAENIRYGR--EDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQ 533
Query: 764 RIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAAD 823
RI IARA+ ++ I LLD+ SA+D + + + L + ++ + + H++ + AD
Sbjct: 534 RIAIARALVRNPKILLLDEATSALDTES-EAVVQAALDKAREGRTTIVIAHRLSTVRNAD 592
Query: 824 IILVMENGRIAQAGRFEELLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELN 883
+I + G I + G +EL+++ + LV +Q + + + + S+D +++
Sbjct: 593 VIAGFDGGVIVEQGNHDELMREKGIYFKLV--MTQTAGNEIELGNEACKSKDEIDNLDMS 650
Query: 884 SDSTSNVKLVH-SQHDSEHELSLEITEKGGKLVQEEEREKGSIGKEVY-----WSYLT-- 935
S + + + S S + + K +E+ S + + W Y
Sbjct: 651 SKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVG 710
Query: 936 ---AVKGGALVPI--ILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLL 990
A+ G L P ++ ++ V + N+ L++ +L
Sbjct: 711 IFCAIINGGLQPAFSVIFSKV-VGVF-----------TNGGPPETQRQNSNLFSLLFLIL 758
Query: 991 TVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDST--PTGRILNRASNDQ 1048
+ S + L+ G ++L + S+ R +++FD TG + R +ND
Sbjct: 759 GIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDA 818
Query: 1049 SVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQ---VFVIFIPVTGICIWYQQYYIPTA 1105
+ + RL +I + I + WQ + + +P+ I + +
Sbjct: 819 AQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQ 878
Query: 1106 RELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAME 1165
+ I E++ T+ + +E +F + R
Sbjct: 879 ALKDKKELEGSGKIAT---EAIENFRTVVSLTREQKFETMYAQSLQIPYR---------- 925
Query: 1166 WLCFRLNLLSNFVFAFSLVVLVT------------LPEGIINPS---IAGLAVTYGINLN 1210
+ + F+F+ ++ + + ++ + A+ +G
Sbjct: 926 -NAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAV 984
Query: 1211 VLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIR 1270
+S + A +S I++ E + + P+ G + F +
Sbjct: 985 GQVSSFAPDYAKA---TVSASHIIRIIEKTPEIDSYSTQGLKPNMLE--GNVQFSGVVFN 1039
Query: 1271 YAEHLPS-----VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNV 1325
Y P+ VL+ +S + + +VG +G GKST++Q + R +P GS+ +D
Sbjct: 1040 Y----PTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGK 1095
Query: 1326 DITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL---DPLVQYSDKQVWEALDKCQLGDLVR 1382
+I ++ + LR++LGI+ Q+P LFD ++ N+ D S +++ A + + +
Sbjct: 1096 EIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFID 1155
Query: 1383 AKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIIS 1442
+ +K ++ V + G S GQ+Q + R L+++ IL+LDEAT+++D+ ++ V+Q+ +
Sbjct: 1156 SLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD 1215
Query: 1443 QEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEYSMRS 1502
+ + RT + IAHR+ T+ ++DL++V+ +G++ E+ + +LL + + ++ +
Sbjct: 1216 KAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVSVQAGAK 1274
Query: 1503 QN 1504
++
Sbjct: 1275 RS 1276
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 267 bits (684), Expect = 3e-77
Identities = 120/577 (20%), Positives = 242/577 (41%), Gaps = 29/577 (5%)
Query: 930 YWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTL 989
W+Y+ K G +V I L ++ + + + I+ +
Sbjct: 16 LWTYIRLYKAGLVVSTIALVINA--AADTYMISLLKPLLDEGFGNAESNFLRILPFMILG 73
Query: 990 LTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQS 1049
L L + ++ ++ + + P+ FFD TG +L+R + D
Sbjct: 74 LMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSE 133
Query: 1050 VLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQ---VFVIFIPVTGICIWYQQYYIPTAR 1106
+ + L I+G + +M +WQ V ++ PV I + R
Sbjct: 134 QVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAI---SFVSKRFR 190
Query: 1107 ELARLAEIQRAPILHHFAESLAGAATIHAFDQED----RFTNANLSLIDNHSRPWFHNVS 1162
+++R + + + L G + ++ ++ RF + ++ + VS
Sbjct: 191 KISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVS----NSMRQQTMKLVS 246
Query: 1163 AMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASI--IWNI 1220
A + ++++ A V+ + + I G + L + + ++
Sbjct: 247 AQSIADPVIQMIASL--ALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSV 304
Query: 1221 CNAENKMI-SVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVL 1279
+ + + + + + +L +E E + G + ++ Y L
Sbjct: 305 TSEFQRGMAACQTLFGLMDLETERDNGKYEAERVN-----GEVDVKDVTFTYQGKEKPAL 359
Query: 1280 KNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339
++S + P K V +VGR+GSGKST+ R + GSI +D D+ L +LR
Sbjct: 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419
Query: 1340 GIIPQDPTLFDGTVRGN--LDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGE 1397
++ Q+ LF+ T+ N +Y+ +Q+ +A + + + + LD+ + ENG
Sbjct: 420 ALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGT 479
Query: 1398 NWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRI 1457
+ S GQRQ + R LL+ + +L+LDEAT+++D+ ++ IQ + + K++TV+ IAHR+
Sbjct: 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRL 539
Query: 1458 HTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQL 1494
T+ +D +LV+ +G I E LL + D ++QL
Sbjct: 540 STIEQADEILVVDEGEIIERGRHADLLAQ-DGAYAQL 575
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 8e-59
Identities = 120/580 (20%), Positives = 240/580 (41%), Gaps = 59/580 (10%)
Query: 304 IYKAIFFFIR---KKAAINASFAVINAATSYVGPYLINDFVN-FLTDKKSRSLESGYLLA 359
+K ++ +IR ++ VINAA L+ ++ + +S L +L
Sbjct: 12 TFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFL---RILP 68
Query: 360 LAFLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYM 419
LG V ++ + + + + L+ +H+ + ++G +++ +
Sbjct: 69 FMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRI 128
Query: 420 SVDVQRISDFIFYSNYMFMLPVQ----ISLAIYILRTNLGLGSLAALAATLTVMTCNIPI 475
+ D ++++ S + + + I L + + L SL + V I
Sbjct: 129 TYDSEQVAGAT--SRALVSIVREGASIIGLLTLMFWNSWQL-SLVLIVVAPVVA---FAI 182
Query: 476 TRIQKRFQS---KIMDAKDNRMRATSEVLKNMKTLKL---QAWDT-RFLQKLESLRQVEC 528
+ + KRF+ + A + + ++LK K + Q + RF + S+RQ
Sbjct: 183 SFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQT- 241
Query: 529 IWLWKSLRLSATSAFI--FWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPI 586
K + + + + S +V+ + + +LT G + L P+
Sbjct: 242 ---MKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPL 298
Query: 587 FNLPDLLSNIAQGKVSADRIAAYL-QEDEIQRDAVEY-VPKGRSEFEVEVVNGKFSWNPE 644
L + S +G + + + E E E G + + + F++ +
Sbjct: 299 KALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVK----DVTFTYQGK 354
Query: 645 SSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG--EIQKMAGTVKISGTK----- 697
P L + + +G VA+ G GSGKS++ + ++ G++ + G
Sbjct: 355 EK-PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDS--GSICLDGHDVRDYK 411
Query: 698 --------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEAC--ALVKDF-ELFASGD 746
A V Q+ + I NI + + + + ++ +A A +F E G
Sbjct: 412 LTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTR-EQIEQAARQAHAMEFIENMPQGL 470
Query: 747 LTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD 806
T IGE G ++SGGQ+QR+ IARA+ +DA + +LD+ SA+D + + + L + K+
Sbjct: 471 DTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES-ERAIQAALDELQKN 529
Query: 807 KSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846
K+VL + H++ + AD ILV++ G I + GR +LL Q+
Sbjct: 530 KTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQD 569
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 266 bits (683), Expect = 5e-77
Identities = 132/577 (22%), Positives = 243/577 (42%), Gaps = 42/577 (7%)
Query: 930 YWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSD----GEPALGMNIVLL 985
W + K G +V I L +L AS+ +M P D + + L
Sbjct: 16 LWPTIAPFKAGLIVAGIAL------ILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPL 69
Query: 986 VYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRAS 1045
V L + + + + ++ + + + + P+AFFD TG +L+R +
Sbjct: 70 VVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRIT 129
Query: 1046 NDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQ---VFVIFIPVTGICIWYQQYYI 1102
D + +G L I+G +M +WQ + V+ P+ I I
Sbjct: 130 YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF 189
Query: 1103 PTARELARLAEIQRAPILHHFAESLAGAATIHAFDQED----RFTNANLSLIDNHSRPWF 1158
R +++ + + + L G + F ++ RF + +
Sbjct: 190 ---RSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVS----NKMRLQGM 242
Query: 1159 HNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLNVLQASI-- 1216
VSA + L+++ A + V+ +++ AG ++ L +
Sbjct: 243 KMVSASSISDPIIQLIASL--ALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKS 300
Query: 1217 IWNICNAENKMI-SVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHL 1275
+ N+ + + + + + + E + G + F N+ Y
Sbjct: 301 LTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRAT-----GDLEFRNVTFTYPGRE 355
Query: 1276 PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL 1335
L+NI+ P K V +VGR+GSGKST+ I R + G I++D D+ + L L
Sbjct: 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 415
Query: 1336 RSRLGIIPQDPTLFDGTVR-----GNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDS 1390
R+++ ++ Q+ LF+ TV + +YS +Q+ EA D + + LD+
Sbjct: 416 RNQVALVSQNVHLFNDTVANNIAYARTE---EYSREQIEEAARMAYAMDFINKMDNGLDT 472
Query: 1391 TVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTV 1450
+ ENG S GQRQ + R LL+ S IL+LDEAT+++D+ ++ IQ + + K+RT
Sbjct: 473 IIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTS 532
Query: 1451 VTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLERE 1487
+ IAHR+ T+ +D ++V+ DG I E + ++LL +
Sbjct: 533 LVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH 569
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 8e-60
Identities = 122/577 (21%), Positives = 242/577 (41%), Gaps = 53/577 (9%)
Query: 304 IYKAIFFFIR---KKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLAL 360
++ ++ I + ++NAA+ L+ ++ K RS+ + L
Sbjct: 12 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVL--LWMPL 69
Query: 361 AFLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMS 420
+G ++ I + + ++ + L+ + + ++G +++ ++
Sbjct: 70 VVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRIT 129
Query: 421 VDVQRISDFIFYSNYMFMLPVQ----ISLAIYILRTNLGLGSLAALAATLTVMTCNIPIT 476
D ++++ S + + + I L I + + L S+ + V I I
Sbjct: 130 YDSEQVASSS--SGALITVVREGASIIGLFIMMFYYSWQL-SIILVVLAPIVS---IAIR 183
Query: 477 RIQKRFQS---KIMDAKDNRMRATSEVLKNMKTLKL---QAWDT-RFLQKLESLRQVECI 529
+ KRF+S + + + ++LK K + + Q +T RF + +R
Sbjct: 184 VVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQG-- 241
Query: 530 WLWKSLRLSA--TSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIF 587
K + S+ S V+ + + LTAG + ++ L P+
Sbjct: 242 --MKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLK 299
Query: 588 NLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSS 647
+L ++ + +G + + A L ++ + + + + + E V F++ P
Sbjct: 300 SLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVT--FTY-PGREV 356
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG--EIQKMAGTVKISGTK-------- 697
P L I LK+ G VA+ G GSGKS++ S I +I + G + + G
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE--GHILMDGHDLREYTLAS 414
Query: 698 -----AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEAC--ALVKDF-ELFASGDLTE 749
A V Q+ + + NI + + ++ EA A DF +G T
Sbjct: 415 LRNQVALVSQNVHLFNDTVANNIAYART-EEYSREQIEEAARMAYAMDFINKMDNGLDTI 473
Query: 750 IGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSV 809
IGE G+ +SGGQ+QRI IARA+ +D+ I +LD+ SA+D + + + L + K+++
Sbjct: 474 IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES-ERAIQAALDELQKNRTS 532
Query: 810 LYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846
L + H++ + AD I+V+E+G I + G ELL Q+
Sbjct: 533 LVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH 569
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 263 bits (675), Expect = 5e-76
Identities = 114/591 (19%), Positives = 226/591 (38%), Gaps = 62/591 (10%)
Query: 930 YWSYLTAVKGGALVPIILLAQSSF------QVLQVASNYWMAWASPPTSDGEPALGMNIV 983
Y ++ K II+ +++ A + + + T + L +
Sbjct: 5 YLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHL-TIAI 63
Query: 984 LLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNR 1043
+ + + +R L T + + + + + F+ + G++++R
Sbjct: 64 GIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISR 123
Query: 1044 ASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQ---VFVIFIPVTGICIWYQQY 1100
ND + L I I+ + +M + + + P + ++
Sbjct: 124 VINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFG 183
Query: 1101 YIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQED----RFTNANLSLIDNHSRP 1156
+ R+L R A + E + G + + +F ED F N N
Sbjct: 184 RL---RKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKN----TNFLTR 236
Query: 1157 WFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYG-INLNVLQAS 1215
+ + +N +++ + V G I + L A
Sbjct: 237 ALKHTRWNAYSFAAINTVTDIGPIIVIGV-------------GAYLAISGSITVGTLAAF 283
Query: 1216 I---------IWNICNAENK----MISVERILQYSNLPSEAPLVTEECRPPSNWPDV-GT 1261
+ + + + S++R+ Q + + + G
Sbjct: 284 VGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYD----IKNGVGAQPIEIKQGR 339
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I ++ +Y ++ +LK+I+ + + V VG +G GKSTLI I R + T G I+
Sbjct: 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVR-----GNLDPLVQYSDKQVWEALDKCQ 1376
ID +I LR+++G++ QD LF TV+ G +D++V EA
Sbjct: 400 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA----TDEEVVEAAKMAN 455
Query: 1377 LGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGV 1436
D + + D+ V E G S GQ+Q + R L IL+LDEAT+++D ++ +
Sbjct: 456 AHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESI 515
Query: 1437 IQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLERE 1487
IQ+ + KDRT + +AHR+ T+ +D ++V+ +G I E + +L+ ++
Sbjct: 516 IQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ 566
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 7e-51
Identities = 124/582 (21%), Positives = 231/582 (39%), Gaps = 55/582 (9%)
Query: 304 IYKAIFFFI---RKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESG----- 355
+ K F+ + + +I + P LI ++ + + + + +
Sbjct: 1 MIKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLT 60
Query: 356 YLLALAFLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEI 415
+ +A +V + + A+ ++ + LY LS++ ++ G++
Sbjct: 61 IAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQV 120
Query: 416 INYMSVDVQRISDFIFYSNYMFMLPVQ--ISLAIYILRTNLGLGSLAALAATLTVMTCNI 473
I+ + DV++ DFI L I + ++ L LAA +
Sbjct: 121 ISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKL----TLAALFIFPFYIL 176
Query: 474 PITRIQKRFQSKIMDAKDNRMRATS---EVLKNMKTLKL----QAWDTRFLQKLESLRQV 526
+ R + + E ++ + +K F +K +
Sbjct: 177 TVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTR 236
Query: 527 ECIWLWKSLRLSA--TSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQD 584
K R +A +A I V+ GA + + +T G + + + +L
Sbjct: 237 A----LKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFG 292
Query: 585 PIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPE 644
P+ L + + Q S DR+ + ED ++ V P + +++ + F +N
Sbjct: 293 PLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN 352
Query: 645 SSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG--EIQKMAGTVKISGTK----- 697
+ P L I L +++G VA G G GKS+L++ I ++ G + I G
Sbjct: 353 EA-PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS--GQILIDGHNIKDFL 409
Query: 698 --------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVK--DF-ELFASGD 746
V Q + + ++ENIL G + + VEA + DF G
Sbjct: 410 TGSLRNQIGLVQQDNILFSDTVKENILLGRPTAT--DEEVVEAAKMANAHDFIMNLPQGY 467
Query: 747 LTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFK--DCLMGIL 804
TE+GERG+ +SGGQKQR+ IAR + I +LD+ SA+D + + + + D L
Sbjct: 468 DTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--- 524
Query: 805 KDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846
KD++ L V H++ + AD I+V+ENG I + G EL+ +
Sbjct: 525 KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ 566
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 251 bits (643), Expect = 1e-71
Identities = 151/605 (24%), Positives = 259/605 (42%), Gaps = 88/605 (14%)
Query: 931 WSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLL 990
YL ++ + + SS +L V S Y + + +L+ +
Sbjct: 29 LGYLRPHTFTLIMVFVFVTVSS--ILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTI 86
Query: 991 TVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASND--- 1047
+SL L+ ++ +L + + R P+ FFD TP G I++R ND
Sbjct: 87 YALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDN 146
Query: 1048 ------QSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQ---VFVIFIPVTGICIWY- 1097
S++ I+ + G + +M +V V + +P+T +
Sbjct: 147 INNVLGNSIIQF---------FSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIV 197
Query: 1098 ----QQYYIPTARELARL-AEIQRAPILHHFAESLAGAATIHAFDQED----RFTNANLS 1148
++Y+ R L +L I+ E ++G I F +E+ +F N S
Sbjct: 198 SSQTRKYFYENQRVLGQLNGIIE---------EDISGLTVIKLFTREEKEMEKFDRVNES 248
Query: 1149 LIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGIN 1208
L ++ S + +N+++N FA G LA+ I
Sbjct: 249 LRKVGTKAQI--FSGVLPPL--MNMVNNLGFALISGF------G------GWLALKDIIT 292
Query: 1209 LNVLQASI---------IWNICNAENKMIS----VERILQYSNLPSEAPLVTEECRPPSN 1255
+ + I + + N N + ERI + +L E
Sbjct: 293 VGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVR 352
Query: 1256 WPDVGTISFHNLQIRYAEHLPSVLKNISCTF-PGRKKVGVVGRTGSGKSTLIQAIFRIVE 1314
G I F N+ Y + P VLK+I+ PG +KV +VG TGSGK+T++ + R +
Sbjct: 353 ----GEIEFKNVWFSYDKKKP-VLKDITFHIKPG-QKVALVGPTGSGKTTIVNLLMRFYD 406
Query: 1315 PTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVR-----GNLDPLVQYSDKQVW 1369
G I++D +DI KI LRS +GI+ QD LF TV+ GN +D+++
Sbjct: 407 VDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGA----TDEEIK 462
Query: 1370 EALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASV 1429
EA ++ E ++ + +NGE+ S GQRQL + R L IL+LDEAT++V
Sbjct: 463 EAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNV 522
Query: 1430 DSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDS 1489
D+ T+ IQ + + + +T + IAHR++T+ ++DL++VL DG I E +L+++
Sbjct: 523 DTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RG 581
Query: 1490 FFSQL 1494
F+ +L
Sbjct: 582 FYYEL 586
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 1e-38
Identities = 133/584 (22%), Positives = 246/584 (42%), Gaps = 75/584 (12%)
Query: 305 YKAIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFL- 363
+ + F +++ + PYLI ++ + + L Y+L L +
Sbjct: 35 HTFTLIMV-------FVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIY 87
Query: 364 GAKMVETIAQRQWIFGARQ-LGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVD 422
+ Q + + Q + RLR L L R + + R H G+II+ + D
Sbjct: 88 ALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQR--VPVGFFDRTPH--GDIISRVIND 143
Query: 423 VQRISDFIFYS-NYMFMLPVQISLAIYI-LRTNLGLGSLAALAATLTVMTCNIPITRIQK 480
V I++ + S F V ++ A+ + R N+ L + LTV+ I ++ +K
Sbjct: 144 VDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRK 203
Query: 481 RF--QSKIMDAKDNRMRATSEVLKNMKTLKL----QAWDTRFLQKLESLRQVECIWLWKS 534
F +++ + N + E + + +KL + +F + ESLR+V K+
Sbjct: 204 YFYENQRVL-GQLNGI--IEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVG----TKA 256
Query: 535 LRLSATS--AFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDL 592
S + F + FG + L +T G + + + R P+ L +
Sbjct: 257 QIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQ 316
Query: 593 LSNIAQGKVSADRIAAYLQEDEIQ--RDAVEYVP-KGRSEFEVEVVNGKFSWNPESSSPT 649
+ I SA+RI L +E + DAVE +G EF+ N FS++ + P
Sbjct: 317 FNMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFK----NVWFSYDKKK--PV 370
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG--EIQKMAGTVKISGTK---------- 697
L I +K G KVA+ G GSGK+++++ ++ ++ + G + + G
Sbjct: 371 LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDR--GQILVDGIDIRKIKRSSLR 428
Query: 698 ---AYVPQSPWILTGNIRENILFGNQYDSCKYDRT----VEAC--ALVKDF-ELFASGDL 747
V Q + + ++EN+ +GN T EA F + G
Sbjct: 429 SSIGIVLQDTILFSTTVKENLKYGNP------GATDEEIKEAAKLTHSDHFIKHLPEGYE 482
Query: 748 TEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFK--DCLMGILK 805
T + + G ++S GQ+Q + I RA + I +LD+ S VD T + LM +
Sbjct: 483 TVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM---E 539
Query: 806 DKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGF 849
K+ + + H++ + AD+I+V+ +G I + G+ +EL+++ GF
Sbjct: 540 GKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKR-GF 582
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 227 bits (580), Expect = 2e-63
Identities = 143/620 (23%), Positives = 260/620 (41%), Gaps = 81/620 (13%)
Query: 919 EREKGSIGKEVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYW----MAWASPPTSDG 974
G G + YL A++ + F V++V + +A +G
Sbjct: 3 SGSGGGGGSKTLARYLKPYWIFAVLAPL------FMVVEVICDLSQPTLLARI---VDEG 53
Query: 975 EPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAF--- 1031
++VL +L + +L + + + +Q ++ + R ++F
Sbjct: 54 IARGDFSLVL-KTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSIS 112
Query: 1032 -FDSTPTGRILNRASND----QSVLDLELAGRLGW-----CAFSIIQILGTIGVMSQVAW 1081
+ T ++ R +ND Q+++ + L R+ I+ + +S
Sbjct: 113 NVNRFHTSSLITRLTNDVTQLQNLVMMLL--RIVVRAPLLFVGGIVMAVSINVKLS---S 167
Query: 1082 QVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRA--PILHHFAESLAGAATIHAFDQE 1139
V + IP + T + +IQ + + E+L G + AF +E
Sbjct: 168 -VLIFLIPPIVLLF-----VWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRRE 221
Query: 1140 D----RFTNANLSLIDNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIIN 1195
+ F AN SL + +SA + F L F+ ++ ++ ++
Sbjct: 222 EYENENFRKANESLRRS-------IISAFSLIVF-ALPLFIFIVNMGMIAVLWFGGVLVR 273
Query: 1196 P---SIAGLA--VTYG--INLNVLQASIIWNICN-AENKMISVERILQYSNLPSEAPLVT 1247
I + Y I +++ I N A S +R+L+ N +
Sbjct: 274 NNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRA---SASAKRVLEVLNEKPA---IE 327
Query: 1248 EECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQ 1307
E + G++SF N++ RY E+ VL ++ + V V+G TGSGKSTL+
Sbjct: 328 EADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMN 387
Query: 1308 AIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQY---- 1363
I R+++P G + +D +D+ + L DLR + +PQ+ LF GT++ NL ++
Sbjct: 388 LIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENL----KWGRED 443
Query: 1364 -SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVL 1422
+D ++ EA Q+ D + + E DS V G N+S GQ+Q + R L+KK +L+L
Sbjct: 444 ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLIL 503
Query: 1423 DEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTK 1482
D+ T+SVD T+ I + + K T I +I T + +D +LVL +G++A + + +
Sbjct: 504 DDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKE 563
Query: 1483 LLE-----REDSFFSQLIKE 1497
LLE RE + SQ
Sbjct: 564 LLEHCKPYRE-IYESQFGNG 582
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 181 bits (463), Expect = 3e-48
Identities = 137/577 (23%), Positives = 235/577 (40%), Gaps = 73/577 (12%)
Query: 313 RKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSL---ESGYLLALAFLGAKMVE 369
A + F V+ P L+ V+ + SL +L +A +G V
Sbjct: 22 WIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIG--AVG 79
Query: 370 TIAQRQWIFGARQ---LGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRI 426
I +F + G LR L +RK L S + + +I ++ DV ++
Sbjct: 80 GIGCT--VFASYASQNFGADLRRDL----FRKVLSFSISNVNRFHTSSLITRLTNDVTQL 133
Query: 427 SDFIFYS-NYMFMLPVQISLAIY-ILRTNLGLGSLAALAATLTVMTCNIPITR----IQK 480
+ + + P+ I + N+ L S + ++ + +T+ + +
Sbjct: 134 QNLVMMLLRIVVRAPLLFVGGIVMAVSINVKL-SSVLIFLIPPIVLLFVWLTKKGNPLFR 192
Query: 481 RFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDT------RFLQKLESLRQVECIWLWKS 534
+ Q D R E L ++ ++ A+ F + ESLR+ +
Sbjct: 193 KIQEST----DEVNRVVRENLLGVRVVR--AFRREEYENENFRKANESLRRSI----ISA 242
Query: 535 LRLSATS--AFIFWGSPTFISVVTFGACMLLGIQLTAGRVLS-------ALATFRMLQDP 585
L + FIF + I+V+ FG ++ Q+ G +++ + + M+ +
Sbjct: 243 FSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGN- 301
Query: 586 IFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPES 645
I N I + SA R+ L E +A + E V N +F + E+
Sbjct: 302 ILNF------IVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRY-FEN 354
Query: 646 SSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-------- 697
+ P L G+ VK G VA+ G GSGKS+L++ I I G V++
Sbjct: 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKD 414
Query: 698 -----AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEAC--ALVKDF-ELFASGDLTE 749
+ VPQ + +G I+EN+ +G + + D VEA A + DF G +
Sbjct: 415 LRGHISAVPQETVLFSGTIKENLKWGREDAT--DDEIVEAAKIAQIHDFIISLPEGYDSR 472
Query: 750 IGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSV 809
+ G N SGGQKQR+ IARA+ + + +LDD S+VD T ++ D L K +
Sbjct: 473 VERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI-LDGLKRYTKGCTT 531
Query: 810 LYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846
+T ++ AD ILV+ G++A G +ELL+
Sbjct: 532 FIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHC 568
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 1e-61
Identities = 82/265 (30%), Positives = 141/265 (53%), Gaps = 13/265 (4%)
Query: 1227 MISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTF 1286
I +E + +L E V + G I F N+ YA+ L+++S T
Sbjct: 22 FIDMENMF---DLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRE-TLQDVSFTV 77
Query: 1287 PGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDP 1346
+ + +VG +G+GKST+++ +FR + + G I ID DI+++ LRS +G++PQD
Sbjct: 78 MPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDT 137
Query: 1347 TLFDGTVRGNLDPLVQY-----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSV 1401
LF+ T+ N ++Y + +V A + D + A E + V E G S
Sbjct: 138 VLFNDTIADN----IRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSG 193
Query: 1402 GQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVI 1461
G++Q + RT+LK I++LDEAT+++D++ + IQ +++ +RT + +AHR+ TV+
Sbjct: 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVV 253
Query: 1462 DSDLVLVLSDGRIAEYDSPTKLLER 1486
++D +LV+ DG I E LL R
Sbjct: 254 NADQILVIKDGCIVERGRHEALLSR 278
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 2e-40
Identities = 78/288 (27%), Positives = 129/288 (44%), Gaps = 33/288 (11%)
Query: 581 MLQDPIFNLPDLLSNIAQGKVSADRIAAYLQED-EIQ--RDAVEYVP-KGRSEFEVEVVN 636
+ L+ + + + + L+E+ E++ A KGR EFE N
Sbjct: 3 SSHHHHHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFE----N 58
Query: 637 GKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG--EIQKMAGTVKIS 694
FS+ TL + V G +A+ G G+GKS++L + +I +G ++I
Sbjct: 59 VHFSYADGR--ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS--SGCIRID 114
Query: 695 GTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEAC--ALVKDF 739
G VPQ + I +NI +G D A A + D
Sbjct: 115 GQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAG--NDEVEAAAQAAGIHDA 172
Query: 740 -ELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKD 798
F G T++GERG+ +SGG+KQR+ IAR + + I LLD+ SA+D + +
Sbjct: 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSN-ERAIQA 231
Query: 799 CLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846
L + +++ + V H++ + AD ILV+++G I + GR E LL +
Sbjct: 232 SLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRG 279
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 207 bits (529), Expect = 1e-60
Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 3/228 (1%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+S ++ Y + +L++IS + G +G GKST+ + R +PT G I
Sbjct: 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLD--PLVQYSDKQVWEALDKCQLGD 1379
ID I I L + RS++G + QD + GT+R NL Y+D+ +W+ LD
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 1380 LVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQK 1439
V ++L++ V E G S GQRQ + R L+ IL+LDEATAS+DS ++ ++QK
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 1440 IISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLERE 1487
+ K RT + IAHR+ T++D+D + + G+I +L+
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH 228
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 4e-38
Identities = 61/219 (27%), Positives = 107/219 (48%), Gaps = 18/219 (8%)
Query: 644 ESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------ 697
+ S L I + + +A G G GKS++ S + Q AG + I G
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL 71
Query: 698 -------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEAC--ALVKDF-ELFASGDL 747
+V Q I+ G IREN+ +G + D + + A + F E
Sbjct: 72 ENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTD-EDLWQVLDLAFARSFVENMPDQLN 130
Query: 748 TEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK 807
TE+GERG+ +SGGQ+QR+ IARA ++ I +LD+ +++D+ + + + L ++K +
Sbjct: 131 TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSES-ESMVQKALDSLMKGR 189
Query: 808 SVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846
+ L + H++ + AD I +E G+I +G+ EL+ +
Sbjct: 190 TTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH 228
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 3e-60
Identities = 79/240 (32%), Positives = 131/240 (54%), Gaps = 5/240 (2%)
Query: 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
I+F N++ RY P +L NI+ + + +G+VGR+GSGKSTL + I R P G
Sbjct: 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 1320 IIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL---DPLVQYSDKQVWEALDKCQ 1376
++ID D+ + LR ++G++ QD L + ++ N+ +P S ++V A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAG 123
Query: 1377 LGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGV 1436
D + E ++ V E G S GQRQ + R L+ IL+ DEAT+++D ++ V
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 1437 IQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIK 1496
I + + + K RTV+ IAHR+ TV ++D ++V+ G+I E +LL +S +S L +
Sbjct: 184 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 4e-38
Identities = 72/241 (29%), Positives = 109/241 (45%), Gaps = 24/241 (9%)
Query: 625 KGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEI 684
F N +F + P S LD I L +K+G + I G GSGKS+L I
Sbjct: 5 HHDITFR----NIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY 59
Query: 685 QKMAGTVKISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVE 731
G V I G V Q +L +I +NI N ++ +
Sbjct: 60 IPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN--PGMSVEKVIY 117
Query: 732 AC--ALVKDF-ELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVD 788
A A DF G T +GE+G +SGGQ+QRI IARA+ + I + D+ SA+D
Sbjct: 118 AAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD 177
Query: 789 AHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIG 848
+ + + I K ++V+ + H++ + AD I+VME G+I + G+ +ELL +
Sbjct: 178 YES-EHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPES 236
Query: 849 F 849
Sbjct: 237 L 237
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 1e-58
Identities = 77/234 (32%), Positives = 128/234 (54%), Gaps = 11/234 (4%)
Query: 1260 GTISFHNLQIRYAEHLPS-VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMG 1318
I F ++ Y + LK+I+ P +VG TGSGKST+ + ++R + G
Sbjct: 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-G 74
Query: 1319 SIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQY-----SDKQVWEALD 1373
I I ++ K + +RS +GI+PQD LF+ T++ N+ Y +D++V +A
Sbjct: 75 DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI----LYGKLDATDEEVIKATK 130
Query: 1374 KCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT 1433
QL D + A +K D+ V G S G+RQ + R LLK I++ DEAT+S+DS T
Sbjct: 131 SAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT 190
Query: 1434 DGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLERE 1487
+ + QK + K+RT++ IAHR+ T+ ++ +++L+ G+I E + LL+
Sbjct: 191 EYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLN 244
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 1e-38
Identities = 63/240 (26%), Positives = 117/240 (48%), Gaps = 28/240 (11%)
Query: 625 KGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG-- 682
EF + FS+ +++ TL I + G A+ G GSGKS++ +
Sbjct: 15 GVNIEFS----DVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70
Query: 683 EIQKMAGTVKISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRT 729
+ + G +KI G VPQ + I+ NIL+G +
Sbjct: 71 DAE---GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL--DATDEEV 125
Query: 730 VEAC--ALVKDF-ELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSA 786
++A A + DF E T +G +G+ +SGG++QRI IAR + +D I + D+ S+
Sbjct: 126 IKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSS 185
Query: 787 VDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846
+D+ T LF+ + + K+++++ + H++ + +A+ I+++ G+I + G ++LLK N
Sbjct: 186 LDSKT-EYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLN 244
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 4e-49
Identities = 62/250 (24%), Positives = 122/250 (48%), Gaps = 22/250 (8%)
Query: 1260 GTISFHNLQIRYAEHLPS-----VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE 1314
G + F ++ Y P+ VL+ ++ T K +VG GSGKST+ + + +
Sbjct: 15 GLVKFQDVSFAY----PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 1315 PTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQY------SDKQV 1368
PT G +++D + + H L +++ + Q+P LF + R N + Y + +++
Sbjct: 71 PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFREN----IAYGLTRTPTMEEI 126
Query: 1369 WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATAS 1428
+ D + + D+ V E G S GQRQ L R L++K +L+LD AT++
Sbjct: 127 TAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSA 186
Query: 1429 VDSATDGVIQKIISQ--EFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLER 1486
+D+ +Q+++ + E+ RTV+ I ++ + +L L +G + E + +L+ER
Sbjct: 187 LDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER 246
Query: 1487 EDSFFSQLIK 1496
+ +++
Sbjct: 247 -GGCYRSMVE 255
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 7e-36
Identities = 63/256 (24%), Positives = 111/256 (43%), Gaps = 24/256 (9%)
Query: 625 KGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEI 684
KG +F+ + F++ + L G+ + G A+ G GSGKS++ + +
Sbjct: 14 KGLVKFQ----DVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
Query: 685 QKMAGTVKISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVE 731
Q G V + G A V Q P + + RENI +G + +
Sbjct: 70 QPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLT-RTPTMEEITA 128
Query: 732 AC--ALVKDF-ELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVD 788
+ DF F G TE+GE G +SGGQ+Q + +ARA+ + + +LD+ SA+D
Sbjct: 129 VAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALD 188
Query: 789 AH--TGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846
A Q ++VL +T Q+ A IL ++ G + + G +L+++
Sbjct: 189 AGNQLRVQRLLYESPE-WASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG 247
Query: 847 IGFEVLVGAHSQALES 862
+ +V A + ++
Sbjct: 248 GCYRSMVEALAAPSDA 263
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 3e-30
Identities = 47/217 (21%), Positives = 97/217 (44%), Gaps = 25/217 (11%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
L I ++ +G K + G G+GK++LL+ + +GTV + G
Sbjct: 37 LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96
Query: 698 ---AYVPQS---PWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIG 751
+V S + + + ++ G + S + ++ + +L ++
Sbjct: 97 QHIGFVSHSLLEKFQEGERVIDVVISG-AFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKA 155
Query: 752 ERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK--- 807
++ I +S G+KQR+ IARA+ + +LD+P + +D + L +
Sbjct: 156 QQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFI-ARESLLSILDSLSDSYPTL 214
Query: 808 SVLYVTHQVEFLPAA-DIILVMENGRIAQAGRFEELL 843
+++YVTH +E + A IL++++G+ Q G E++L
Sbjct: 215 AMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 43/247 (17%), Positives = 90/247 (36%), Gaps = 33/247 (13%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I + ++LK IS K + G G+GK+TL+ + T G++
Sbjct: 22 IQLDQIGRMKQGK--TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79
Query: 1322 IDNVDITKIG--LHDLRSRLGIIPQDPTL---FDGTVR--------GNLDPLVQYSDKQ- 1367
+ K+G +R +G + V ++ D+
Sbjct: 80 LFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR 139
Query: 1368 --VWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEA 1425
+ L + + L S G++Q + R L+ + +L+LDE
Sbjct: 140 NEAHQLLKLVGMSAKAQQYIGYL-----------STGEKQRVMIARALMGQPQVLILDEP 188
Query: 1426 TASVD-SATDGVIQKI--ISQEFKDRTVVTIAHRIHTVIDS-DLVLVLSDGRIAEYDSPT 1481
A +D A + ++ + +S + ++ + H I + + +L+L DG+ + +
Sbjct: 189 AAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248
Query: 1482 KLLERED 1488
+L E+
Sbjct: 249 DILTSEN 255
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 7e-30
Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 31/232 (13%)
Query: 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT 690
+++ V S +L+ I L+V G KV I G GSGK++LL I G + +G
Sbjct: 3 QLKNVGITLS-GKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPYSGN 59
Query: 691 VKISGT--------KAYVPQSP--WILTGNIRENILFGNQYDSCKYDRTVEACALVKDFE 740
+ I+G Y P + + + + + + D +E +K E
Sbjct: 60 IFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE 119
Query: 741 LFASGDLTEIGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDC 799
R + +S GQ ++ + A+ +I LD+PF VDA +
Sbjct: 120 EIL--------RRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR-----RHV 166
Query: 800 LMGILKD--KSVLYVTH-QVEFLPAAD-IILVMENGRIAQAGRFEELLKQNI 847
+ +K+ K + VTH + + R+ ELL+ +I
Sbjct: 167 ISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSI 218
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 5e-24
Identities = 57/235 (24%), Positives = 100/235 (42%), Gaps = 28/235 (11%)
Query: 1262 ISFHNLQIRYAEHLPS--VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
I N+ I + L+NI+ G +KV ++G GSGK+TL++AI ++ P G+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNG-EKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1320 IIIDNVDITKIGLHDLRSRLGIIPQDPTLFDG--TVRGN--LDPLVQYSDKQ-VWEALDK 1374
I I+ +++ K +R+ + P ++ TV L ++ D+ E L
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLK- 113
Query: 1375 CQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATD 1434
++ EE L + + S GQ L L + I+ LDE +VD+A
Sbjct: 114 -----ALKLGEEILRRKLYK----LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARR 164
Query: 1435 GVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDG-RIAEYDSPTKLLERE 1487
VI + I + K + + H + + + G R+ S ++LLE
Sbjct: 165 HVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESS 217
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 8e-28
Identities = 57/260 (21%), Positives = 106/260 (40%), Gaps = 45/260 (17%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
+ V N F + E+ + + +G +A+ G G GKS+LL +LG + + G +
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 692 KISGTKAYVPQSP-WILTGNIRENILFG-----------NQYDSCKYDRTVEACALVKDF 739
++ + +VPQ ++ + +L G +D Y ++A +
Sbjct: 63 EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD---YQVAMQALDYL--- 116
Query: 740 ELFASGDLTEIGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKD 798
+LT + +R +SGGQ+Q I IARA+ + + LLD+P SA+D Q
Sbjct: 117 ------NLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDL--ANQDI-- 166
Query: 799 CLMGILKD------KSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELL-KQNI--- 847
++ +L D +V++ THQ + A A+ L++ G +L +N+
Sbjct: 167 -VLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF-GETRNILTSENLTAL 224
Query: 848 -GFEVLVGAHSQALESVLTV 866
+
Sbjct: 225 FHLPMFEQQAQYKESFFTHF 244
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 3e-21
Identities = 47/230 (20%), Positives = 92/230 (40%), Gaps = 40/230 (17%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+S NL Y + + + ++ + V+G+ G GKSTL+ + I P G I
Sbjct: 5 LSVENLGFYY-QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI- 62
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTL-FDGTVR--------GNLDPLVQYSDKQ---VW 1369
++ +G +PQ + F +V +++ +
Sbjct: 63 ------------EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM 110
Query: 1370 EALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASV 1429
+ALD L L + + S S GQRQL + R + + +++LDE T+++
Sbjct: 111 QALDYLNLTHL---AKREFTSL--------SGGQRQLILIARAIASECKLILLDEPTSAL 159
Query: 1430 DSATDGVIQKIISQEFKD--RTVVTIAHRIHTVID-SDLVLVLSDGRIAE 1476
D A ++ ++ + TVV H+ + V+ ++ L+L+
Sbjct: 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF 209
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-26
Identities = 59/241 (24%), Positives = 102/241 (42%), Gaps = 27/241 (11%)
Query: 1262 ISFHNLQIRYAEHLPS---VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMG 1318
I N+ + P L+N+S + + V G TGSGKSTL+Q + ++EPT G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 1319 SIIIDNVDITKIGLHDLRSRLGIIPQDPT--LFDGTVR-------GNLDPLVQYSDKQVW 1369
++ D +++R +GI Q P F V N P V
Sbjct: 63 DVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRD-PVPLVK 118
Query: 1370 EALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASV 1429
+A++ L + D S G+++ + ++ + IL+LDE +
Sbjct: 119 KAMEFVGLDF-----DSFKDRVPFF----LSGGEKRRVAIASVIVHEPDILILDEPLVGL 169
Query: 1430 D-SATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE 1487
D +++ + + +TV+ I+H I TVI+ D V+VL G+ + + LE+
Sbjct: 170 DREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229
Query: 1488 D 1488
D
Sbjct: 230 D 230
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 2e-19
Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 34/237 (14%)
Query: 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT 690
EV V+ F L+ + L + G + + G GSGKS+LL + G I+ +G
Sbjct: 4 EVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD 63
Query: 691 VKISGTKA----------YVPQSP--WILTGNIRENILFG--NQ-YDSCKYDRTVEACAL 735
V G + Q P + + + F N D +A
Sbjct: 64 VLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEF 123
Query: 736 VKDFELFASGDLTEIGERG-INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQ 794
V D +R +SGG+K+R+ IA + + DI +LD+P +D
Sbjct: 124 VG-------LDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG--- 173
Query: 795 LFKDCLMGILKD-----KSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845
K L+ I++ K+V+ ++H +E + D ++V+E G+ G E L++
Sbjct: 174 --KTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 4e-26
Identities = 58/245 (23%), Positives = 105/245 (42%), Gaps = 34/245 (13%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ L Y++ LK I+ + ++G G GKSTL Q I++P+ G I+
Sbjct: 8 LKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 1322 IDNVDIT--KIGLHDLRSRLGIIPQDPT--LFDGTVR-------GNLDPLVQYSDKQVW- 1369
DN I + G+ LR +GI+ QDP LF +V N+ + + ++
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM----KLPEDEIRK 122
Query: 1370 ---EALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEAT 1426
AL + + L L S GQ++ + L+ + +L+LDE T
Sbjct: 123 RVDNALKRTGIEHLKDKPTHCL-----------SFGQKKRVAIAGVLVMEPKVLILDEPT 171
Query: 1427 ASVD-SATDGVIQKIIS-QEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKL 1483
A +D +++ ++ Q+ T++ H I V D V V+ +GR+ +P ++
Sbjct: 172 AGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
Query: 1484 LERED 1488
++
Sbjct: 232 FAEKE 236
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 4e-20
Identities = 46/247 (18%), Positives = 103/247 (41%), Gaps = 45/247 (18%)
Query: 628 SEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKM 687
++ ++V ++++ + L GI + +KRG AI G G GKS+L G ++
Sbjct: 4 EDYILKVEELNYNYSDGT--HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS 61
Query: 688 AGTVKISGTK-AYVPQSPW----------------ILTGNIRENILFG--NQ-YDSCKYD 727
+G + Y + + + ++ +++ FG N +
Sbjct: 62 SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIR 121
Query: 728 RTV-EACALVKDFELFASGDLTEIGERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFS 785
+ V A + + ++ +S GQK+R+ IA + + + +LD+P +
Sbjct: 122 KRVDNALKRT---------GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTA 172
Query: 786 AVDAHTGTQLFKDCLMGILKD------KSVLYVTHQVEFLPA-ADIILVMENGRIAQAGR 838
+D ++ +M +L + +++ TH ++ +P D + VM+ GR+ G
Sbjct: 173 GLDPMGVSE-----IMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
Query: 839 FEELLKQ 845
+E+ +
Sbjct: 228 PKEVFAE 234
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 5e-23
Identities = 61/269 (22%), Positives = 103/269 (38%), Gaps = 65/269 (24%)
Query: 606 IAAYLQ-----EDEIQRDAVEYVPKGRSEFEVEV--VNGKFSWNPESSSPTLDGIQLKVK 658
I +LQ E+ R K +VE + + S L+ +++
Sbjct: 321 INEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIR 380
Query: 659 RGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFG 718
+G + I G G GK++ + + G + G V+ T AY PQ
Sbjct: 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ---------------- 424
Query: 719 NQYDSCKYDRTVEACALVKDFELFASGDLTEIGER----------GI---------NMSG 759
Y +Y+ TV EL + D +++ GI ++SG
Sbjct: 425 --YIKAEYEGTVY--------ELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSG 474
Query: 760 GQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD------KSVLYVT 813
G+ QR+ IA + +DADIYLLD+P + +D + + ++ K+ L V
Sbjct: 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR-----AIRHLMEKNEKTALVVE 529
Query: 814 HQVEFLPA-ADIILVMENGRIAQAGRFEE 841
H V + +D ++V E G + GR
Sbjct: 530 HDVLMIDYVSDRLIVFE-GEPGRHGRALP 557
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 5e-19
Identities = 50/211 (23%), Positives = 83/211 (39%), Gaps = 37/211 (17%)
Query: 657 VKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--TKAYVPQSPW------ILT 708
VK GM V I G G+GK++ + + G++ S + +
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 173
Query: 709 GNIRENILFGNQYDSC--------------KYDRTVEACALVKDFELFASGDLTEIGERG 754
G IR QY K D + +VK+ EL + +R
Sbjct: 174 GEIRPV--VKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELEL------ENVLDRE 225
Query: 755 I-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DKSVLY 811
+ +SGG+ QR+ IA A+ + A Y D+P S +D ++ + ++ L K+VL
Sbjct: 226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVAR--VIRRLANEGKAVLV 283
Query: 812 VTHQVEFLPA-ADIILVMENGRIAQAGRFEE 841
V H + L +D+I V+ G F +
Sbjct: 284 VEHDLAVLDYLSDVIHVVYGEPGVY-GIFSK 313
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 8e-17
Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 41/230 (17%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
L+ + +G+VG G GK+T ++ + + EPT G + D
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------- 416
Query: 1338 RLGIIPQDPTL---FDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAK---EEKLDST 1391
L + + + ++GTV + K L+ + + D
Sbjct: 417 -LTVAYKPQYIKAEYEGTVY-------ELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRN 468
Query: 1392 VAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIIS--QEFKDRT 1449
V + S G+ Q + TLL+ + I +LDE +A +D + + I E ++T
Sbjct: 469 VED----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 524
Query: 1450 VVTIAHRIHTVID--SDLVLVLSDGRIAEY---DSPTKLLEREDSFFSQL 1494
+ + H + +ID SD ++V +G + P + E + F + +
Sbjct: 525 ALVVEHDV-LMIDYVSDRLIVF-EGEPGRHGRALPPMGMREGMNRFLASV 572
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 2e-15
Identities = 51/270 (18%), Positives = 99/270 (36%), Gaps = 42/270 (15%)
Query: 1260 GTISFHNLQIRYAEHL------PSVLKNISCTF-PGRKKVGVVGRTGSGKSTLIQAIFRI 1312
IS NL + E + + G VG+VG G+GK+T ++ +
Sbjct: 82 NAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDG-MVVGIVGPNGTGKTTAVKILAGQ 140
Query: 1313 VEP------TMGSIIIDNVDITKIGLHDLRSR---LGIIPQDPTLFDGTVRGNLDPLVQY 1363
+ P +I ++ + R + + + + D L P +
Sbjct: 141 LIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ-YVD------LLP--KA 191
Query: 1364 SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSV-----GQRQLFCLGRTLLKKSS 1418
+V E L K D V EE + EN + + G+ Q + LL+K+
Sbjct: 192 VKGKVRELLKKV---DEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAH 248
Query: 1419 ILVLDEATASVDSATDGVIQKIISQEFKDR--TVVTIAHRIHTVID--SDLVLVL--SDG 1472
DE ++ +D + ++I + + V+ + H + V+D SD++ V+ G
Sbjct: 249 FYFFDEPSSYLDIRQRLKVARVI-RRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYGEPG 306
Query: 1473 RIAEYDSPTKLLEREDSFFSQLIKEYSMRS 1502
+ P + F +K+ ++R
Sbjct: 307 VYGIFSKPKGTRNGINEFLQGYLKDENVRF 336
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 6e-23
Identities = 48/220 (21%), Positives = 94/220 (42%), Gaps = 29/220 (13%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ +L + Y + VL+ I+ T V G G GK+TL++ I ++P G II
Sbjct: 11 LEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLDPL-----VQYSDKQVWEALDKC 1375
+ V ITK+ + ++ +P++ + +V L + V+ + ++ +AL+
Sbjct: 68 YNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 122
Query: 1376 QLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG 1435
++ D ++ K +L S G + L TLL + I VLD+ ++D +
Sbjct: 123 EVLD-LKKKLGEL-----------SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKH 170
Query: 1436 VIQKIISQEFKDR-TVVTIAHRIHTVIDSDLVLVLSDGRI 1474
+ K I + K++ V+ + + D L
Sbjct: 171 KVLKSILEILKEKGIVIISSREELSYCDV--NENLHKYST 208
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 2e-19
Identities = 39/199 (19%), Positives = 86/199 (43%), Gaps = 30/199 (15%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG---TKA-----YVP 701
L+ I + +++G V G G GK++LL I ++ + G + +G TK ++P
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84
Query: 702 QSPWI---LTGNIRENILF-GNQYD-SCKYDRTVEACALVKDFELFASGDLTEIGERGIN 756
+ + ++ + + + Y + ++A V ++ ++ ++
Sbjct: 85 EEIIVPRKISV--EDYLKAVASLYGVKVNKNEIMDALESV---------EVLDLKKKLGE 133
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK--SVLYVTH 814
+S G +R+Q+A + +A+IY+LDDP A+D + ++ ILK+K ++
Sbjct: 134 LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK-HKVLKSILEILKEKGIVIISSRE 192
Query: 815 QVEFLPAADIILVMENGRI 833
L D+ +
Sbjct: 193 ---ELSYCDVNENLHKYST 208
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 2e-21
Identities = 41/214 (19%), Positives = 79/214 (36%), Gaps = 35/214 (16%)
Query: 647 SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPW- 705
L+ + + + + G G+GK++L+ + G ++ G + PQ
Sbjct: 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAP 424
Query: 706 --------ILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGI-N 756
+ IR L + + + +I ++ + +
Sbjct: 425 KFPGTVRQLFFKKIRGQFLNP--------QFQTDVVKPL---------RIDDIIDQEVQH 467
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQ---LFKDCLMGILKDKSVLYVT 813
+SGG+ QR+ I A+ ADIYL+D+P + +D+ + + ++ K+ V
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILH--NKKTAFIVE 525
Query: 814 HQVEFLPA-ADIILVMENGRI--AQAGRFEELLK 844
H AD ++V E A A E LL
Sbjct: 526 HDFIMATYLADKVIVFEGIPSKNAHARAPESLLT 559
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 9e-21
Identities = 51/303 (16%), Positives = 97/303 (32%), Gaps = 50/303 (16%)
Query: 644 ESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------ 697
++S L + + G + + GT G GKS+ L + G+ + G
Sbjct: 88 SANSFKLHRL-PTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKY 146
Query: 698 ------------------------AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEAC 733
YV P + G +++ +
Sbjct: 147 FRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYI 206
Query: 734 ALVKDFELFASGDLTEIGERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTG 792
++ L + +R I +SGG+ QR I + Q+AD+Y+ D+P S +D
Sbjct: 207 KIL---------QLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQR 257
Query: 793 TQLFKDCLMGILK--DKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQNIGF 849
+ ++ L K V+ V H + L +D + ++ G G
Sbjct: 258 LNAAQ--IIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY-GVVTLPASVREGI 314
Query: 850 EVLVGAHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHEL---SLE 906
+ + H A E D T + + +S S + + + L E
Sbjct: 315 NIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGE 374
Query: 907 ITE 909
++
Sbjct: 375 FSD 377
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 2e-19
Identities = 47/263 (17%), Positives = 93/263 (35%), Gaps = 34/263 (12%)
Query: 1240 PSEAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTG 1299
+ + + N S+ +L+ + VL F + + ++G G
Sbjct: 332 EALQFRIADATEDLQNDSASRAFSYPSLKKTQGDF---VLNVEEGEFSDSEILVMMGENG 388
Query: 1300 SGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPT--LFDGTVRGNL 1357
+GK+TLI+ + ++P G I K+ + ++ LF +RG
Sbjct: 389 TGKTTLIKLLAGALKPDEGQD------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQF 442
Query: 1358 DPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKS 1417
+ + + + ++ D+ +D V S G+ Q + L +
Sbjct: 443 L-----NPQFQTDVVKPLRIDDI-------IDQEVQH----LSGGELQRVAIVLALGIPA 486
Query: 1418 SILVLDEATASVDSATDGVIQKIIS--QEFKDRTVVTIAHRIHTVID--SDLVLVLSDGR 1473
I ++DE +A +DS + K+I +T + H + +D V+V
Sbjct: 487 DIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIP 545
Query: 1474 I--AEYDSPTKLLEREDSFFSQL 1494
A +P LL + F L
Sbjct: 546 SKNAHARAPESLLTGCNRFLKNL 568
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 5e-14
Identities = 42/239 (17%), Positives = 84/239 (35%), Gaps = 31/239 (12%)
Query: 1262 ISFHNLQIRYAEHL------PSVLKNISCTF-PGRKKVGVVGRTGSGKSTLIQAIFRIVE 1314
I NL H+ S + T PG + +G+VG G GKST ++ + +
Sbjct: 70 IQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPG-QVLGLVGTNGIGKSTALKILAGKQK 128
Query: 1315 PTMGSI---IIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEA 1371
P +G I +L++ + +D + V + +
Sbjct: 129 PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDD---IKAIIKP--QYVDNIPRAIKGP 183
Query: 1372 LDKC--QLGDLVRAKEEKLDSTVAENG-ENW--------SVGQRQLFCLGRTLLKKSSIL 1420
+ K L + E + + EN S G+ Q F +G + ++++ +
Sbjct: 184 VQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVY 243
Query: 1421 VLDEATASVDSATDGVIQKIISQEFKDR--TVVTIAHRIHTVID-SDLVLVLSDGRIAE 1476
+ DE ++ +D +II + V+ + H + + SD V ++
Sbjct: 244 MFDEPSSYLDVKQRLNAAQII-RSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 3e-21
Identities = 54/229 (23%), Positives = 96/229 (41%), Gaps = 26/229 (11%)
Query: 623 VPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG 682
R E E E + + S L+ ++K+G + I G G GK++ + + G
Sbjct: 275 KTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAG 334
Query: 683 EIQKMAGTVKISGTKAYVPQSPWILTGNIRENI--LFGNQYDSCKYDRTVEACALVKDFE 740
+ G ++ T AY PQ + + + L S K + L+K
Sbjct: 335 VEEPTEGKIEWDLTVAYKPQY---IKADYEGTVYELLSKIDAS-KLNSNFYKTELLKPL- 389
Query: 741 LFASGDLTEIGERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDC 799
+ ++ +R + +SGG+ QR+ IA + +DADIYLLD+P + +D + +
Sbjct: 390 -----GIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR-- 442
Query: 800 LMGILKD------KSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEE 841
++ K+ L V H V + +D ++V E G + GR
Sbjct: 443 ---AIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE-GEPGKYGRALP 487
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 3e-17
Identities = 55/266 (20%), Positives = 100/266 (37%), Gaps = 44/266 (16%)
Query: 1242 EAPLVTEECRPPSNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSG 1301
+ + +++ L Y L+ + +G+VG G G
Sbjct: 268 PYEIKFTKTGERVEIERETLVTYPRLVKDYGSF---RLEVEPGEIKKGEVIGIVGPNGIG 324
Query: 1302 KSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTL---FDGTVRGNLD 1358
K+T ++ + + EPT G I D L + + + ++GTV L
Sbjct: 325 KTTFVKMLAGVEEPTEGKIEWD---------------LTVAYKPQYIKADYEGTVYELLS 369
Query: 1359 PLVQ---YSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLK 1415
+ S+ E L + DL D V E S G+ Q + TLL+
Sbjct: 370 KIDASKLNSNFYKTELLKPLGIIDL-------YDREVNE----LSGGELQRVAIAATLLR 418
Query: 1416 KSSILVLDEATASVDSATDGVIQKIIS--QEFKDRTVVTIAHRIHTVID--SDLVLVLSD 1471
+ I +LDE +A +D + + I E ++T + + H + +ID SD ++V +
Sbjct: 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVF-E 476
Query: 1472 GRIAEY---DSPTKLLEREDSFFSQL 1494
G +Y P + E + F + +
Sbjct: 477 GEPGKYGRALPPMGMREGMNRFLASI 502
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 2e-15
Identities = 52/211 (24%), Positives = 82/211 (38%), Gaps = 48/211 (22%)
Query: 657 VKRGMKVAICGTVGSGKSSLLSCILGEIQ------KMAGTVKISGTK------------- 697
VK GM V I G G+GKS+ + + G++ + I +
Sbjct: 44 VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 698 ---AYVPQSPW------ILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLT 748
V + + + G + E + K D T + +VK EL
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVIELLK--------KADETGKLEEVVKALEL------E 149
Query: 749 EIGERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK-- 805
+ ER I ++SGG+ QR+ IA A+ ++A Y D+P S +D + + L
Sbjct: 150 NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAAR--AIRRLSEE 207
Query: 806 DKSVLYVTHQVEFLPA-ADIILVMENGRIAQ 835
KSVL V H + L +DII V+
Sbjct: 208 GKSVLVVEHDLAVLDYLSDIIHVVYGEPGVY 238
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 2e-14
Identities = 38/256 (14%), Positives = 92/256 (35%), Gaps = 36/256 (14%)
Query: 1266 NLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTM------GS 1319
+ RY + + + VG+VG G+GKST ++ + + P +
Sbjct: 26 DCVHRYGVN--AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWD 83
Query: 1320 IIIDNVDITKIGLHDLRSR---LGIIPQ------DPTLFDGTVRGNLDPLVQYSDKQVWE 1370
+I ++ + + + + + + P G V L ++ E
Sbjct: 84 GVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK--ADETGKLEE 141
Query: 1371 ALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD 1430
+ +L +++ + + L S G+ Q + LL+ ++ DE ++ +D
Sbjct: 142 VVKALELENVLEREIQHL-----------SGGELQRVAIAAALLRNATFYFFDEPSSYLD 190
Query: 1431 SATDGVIQKIISQEFKDR--TVVTIAHRIHTVID-SDLVLVLSDGRIAE--YDSPTKLLE 1485
+ I + + +V+ + H + + SD++ V+ + P
Sbjct: 191 IRQRLNAARAI-RRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRN 249
Query: 1486 REDSFFSQLIKEYSMR 1501
+ F +K+ ++R
Sbjct: 250 GINEFLRGYLKDENVR 265
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 5e-20
Identities = 67/220 (30%), Positives = 102/220 (46%), Gaps = 40/220 (18%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
L+ I L + G + I G G GK++LL C+ G Q +G + +SG
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 698 ---AYVPQS----PWILTGNIRENILFGNQYDSCKYD----RTVEACALVKDFELFASGD 746
Y+ Q P LT + NI +G + R L
Sbjct: 80 RRLGYLVQEGVLFPH-LT--VYRNIAYGLGNGKGRTAQERQRIEAMLELTG--------- 127
Query: 747 LTEIGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK 805
++E+ R + +SGGQ+QR +ARA+ D ++ LLD+PFSA+D Q+ +D ++ L+
Sbjct: 128 ISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRED-MIAALR 186
Query: 806 D--KSVLYVTH-QVEFLPAADIILVMENGRIAQAGRFEEL 842
KS ++V+H + E L AD I VM+ GRI Q EL
Sbjct: 187 ANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 8e-06
Identities = 52/252 (20%), Positives = 96/252 (38%), Gaps = 54/252 (21%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ +L + VL +IS + + + ++G +G GK+TL++ + +P G I
Sbjct: 5 LHIGHLSKSFQNT--PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62
Query: 1322 IDNVDITKIGLH---DLRSRLGIIPQDPTLFDG-TVRGNLDPLVQY-----------SDK 1366
+ I + R RLG + Q+ LF TV N + Y +
Sbjct: 63 LSGKTIFSKNTNLPVRER-RLGYLVQEGVLFPHLTVYRN----IAYGLGNGKGRTAQERQ 117
Query: 1367 QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEAT 1426
++ L+ + +L +L S GQ+Q L R L +++LDE
Sbjct: 118 RIEAMLELTGISELAGRYPHEL-----------SGGQQQRAALARALAPDPELILLDEPF 166
Query: 1427 ASVDSATDGVIQKIISQEFKDRTVVTIAHRIH-TVI----D-------SDLVLVLSDGRI 1474
SA D +++ I ++ + + D +D + V+ GRI
Sbjct: 167 ----SALDEQLRRQIREDMIA-----ALRANGKSAVFVSHDREEALQYADRIAVMKQGRI 217
Query: 1475 AEYDSPTKLLER 1486
+ SP +L +
Sbjct: 218 LQTASPHELYRQ 229
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 5e-20
Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 24/203 (11%)
Query: 649 TLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-AYVPQSPWI- 706
L + K G + I G G GK++ ++GEI G+V +Y PQ +
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPN 342
Query: 707 LTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGI-NMSGGQKQRI 765
G +++ N + + K +L + E + ++SGG+ Q++
Sbjct: 343 YDGTVQQ--YLENASKDALSTSSWFFEEVTKRL------NLHRLLESNVNDLSGGELQKL 394
Query: 766 QIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD------KSVLYVTHQVEFL 819
IA + ++AD+Y+LD P S +D + K +K + H +
Sbjct: 395 YIAATLAKEADLYVLDQPSSYLDVEERYIVAK-----AIKRVTRERKAVTFIIDHDLSIH 449
Query: 820 PA-ADIILVMENGRIAQAGRFEE 841
AD I+V + G +AG
Sbjct: 450 DYIADRIIVFK-GEPEKAGLATS 471
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 2e-18
Identities = 39/218 (17%), Positives = 80/218 (36%), Gaps = 24/218 (11%)
Query: 650 LDGIQLKV-KRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV-----------KISGTK 697
L K + + G G GK+++L + GEI G + G +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 698 -AYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKD------FELFASGDLTEI 750
+ + ++ + K+ + L K E+ ++T +
Sbjct: 74 IYNYFKEL--YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNL 131
Query: 751 GERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSV 809
+ +SGG QR+ +A ++ ++AD+Y+ D P S +D + + +LK+K V
Sbjct: 132 WNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNM-AKAIRELLKNKYV 190
Query: 810 LYVTHQVEFL-PAADIILVMENGRIAQAGRFEELLKQN 846
+ V H + L D+I ++ + +
Sbjct: 191 IVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARV 228
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 3e-17
Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 35/228 (15%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
L + + +G++G G GK+T + + + GS+ + ++ +
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY------KP 336
Query: 1338 RLGIIPQDPTLFDGTVRGNLD----PLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVA 1393
+ I + DGTV+ L+ + S E + L L L+S V
Sbjct: 337 Q--RIFPNY---DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRL-------LESNVN 384
Query: 1394 ENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIIS--QEFKDRTVV 1451
+ S G+ Q + TL K++ + VLD+ ++ +D ++ K I +
Sbjct: 385 D----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTF 440
Query: 1452 TIAHRIHTVID--SDLVLVLSDGRIAEY---DSPTKLLEREDSFFSQL 1494
I H + ++ D +D ++V G + SP L + F +L
Sbjct: 441 IIDHDL-SIHDYIADRIIVF-KGEPEKAGLATSPVTLKTGMNEFLREL 486
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-12
Identities = 39/243 (16%), Positives = 88/243 (36%), Gaps = 32/243 (13%)
Query: 1279 LKNISCTFPGR-KKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIID--NVDITKIGLHDL 1335
K P +GV+G+ G GK+T+++ + G II + + + L
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKIL-------AGEIIPNFGDPNSKVGKDEVL 66
Query: 1336 R----SRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDST 1391
+ + ++ + + +QY + + L L + E
Sbjct: 67 KRFRGKEIYNYFKEL----YSNELKIVHKIQYVE-YASKFLKGTVNEILTKIDERGKKDE 121
Query: 1392 VAE--NGENW--------SVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKII 1441
V E N N S G Q + +LL+++ + + D+ ++ +D + K I
Sbjct: 122 VKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI 181
Query: 1442 SQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE--DSFFSQLIKEY 1498
+ K++ V+ + H + + +DL+ ++ R ++F +
Sbjct: 182 RELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAE 241
Query: 1499 SMR 1501
+M+
Sbjct: 242 NMK 244
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 4e-19
Identities = 66/233 (28%), Positives = 112/233 (48%), Gaps = 31/233 (13%)
Query: 1262 ISFHNLQIRYAEHLPSV--LKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
I N+ + + ++ L N+S P + GV+G +G+GKSTLI+ + + PT GS
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 1320 IIIDNVDITKI---GLHDLRSRLGIIPQDPTLFDG-TVRGNLD-PLV------QYSDKQV 1368
+++D ++T + L R ++G+I Q L TV GN+ PL ++V
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 1369 WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATAS 1428
E L LGD + L S GQ+Q + R L +L+ D+AT++
Sbjct: 145 TELLSLVGLGDKHDSYPSNL-----------SGGQKQRVAIARALASNPKVLLCDQATSA 193
Query: 1429 VDSA-TDGVIQ--KIISQEFKDRTVVTIAHRIHTVIDS--DLVLVLSDGRIAE 1476
+D A T +++ K I++ T++ I H + V+ D V V+S+G + E
Sbjct: 194 LDPATTRSILELLKDINRRLG-LTILLITHEMD-VVKRICDCVAVISNGELIE 244
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 10/96 (10%)
Query: 756 NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQ---LFKDC--LMGILKDKSVL 810
N+SGGQKQR+ IARA+ + + L D SA+D T L KD +G+ ++L
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL----TIL 218
Query: 811 YVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845
+TH+++ + D + V+ NG + + E+
Sbjct: 219 LITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 1e-18
Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 53/243 (21%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------- 696
L + +V+ G + + G G+GKS+LL+ + G G+++ +G
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALH 74
Query: 697 KAYVPQSPWILTG-NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGI 755
+AY+ Q + + Q+D + + + + L + R
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLH-QHDKTRTELLNDVAGAL---------ALDDKLGRST 124
Query: 756 N-MSGGQKQRIQIARAVYQD-------ADIYLLDDPFSAVD-AHTGTQLFKDCLMGILKD 806
N +SGG+ QR+++A V Q + LLD+P +++D A Q L IL
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQ---QSA---LDKILSA 178
Query: 807 -----KSVLYVTHQVEFLPA--ADIILVMENGRIAQAGRFEE-----LLKQNIGFEVLVG 854
+++ +H + A +++ G++ +GR EE L Q G
Sbjct: 179 LSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGMNFRRL 237
Query: 855 AHS 857
Sbjct: 238 DIE 240
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 5e-17
Identities = 43/226 (19%), Positives = 78/226 (34%), Gaps = 38/226 (16%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
L +S + + +VG G+GKSTL+ + + GSI + L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 73
Query: 1338 RLGIIPQDPTL-FDGTVRGNLDPLVQ-----YSDKQ-VWEALDKCQLGDLVRAKEEKLDS 1390
+ Q T F V + + + + + L D + +L
Sbjct: 74 HRAYLSQQQTPPFATPVW----HYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQL-- 127
Query: 1391 TVAENGENWSVGQRQLFCLGRTLL-------KKSSILVLDEATASVD----SATDGVIQK 1439
S G+ Q L +L +L+LDE S+D SA D ++
Sbjct: 128 ---------SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 1440 IISQEFKDRTVVTIAHRI-HTVIDSDLVLVLSDGRIAEYDSPTKLL 1484
+ Q +V +H + HT+ + +L G++ ++L
Sbjct: 179 LSQQ---GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 34/201 (16%)
Query: 663 VAICGTVGSGKSSLLSCILGEIQKMAGTVKISG-----TKAY------VPQS----PWIL 707
+ G G+GKS L I G ++ G V+++G VPQ P +
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHL- 85
Query: 708 TGNIRENILFG--NQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGIN-MSGGQKQR 764
++ NI +G N + R E + + + +R +SGG++QR
Sbjct: 86 --SVYRNIAYGLRNVERVERDRRVREMAEKLG---------IAHLLDRKPARLSGGERQR 134
Query: 765 IQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSV--LYVTH-QVEFLPA 821
+ +ARA+ + LLD+P SAVD T L ++ L + ++ V L+VTH +E
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEE-LRFVQREFDVPILHVTHDLIEAAML 193
Query: 822 ADIILVMENGRIAQAGRFEEL 842
AD + VM NGRI + G+ +EL
Sbjct: 194 ADEVAVMLNGRIVEKGKLKEL 214
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 65/240 (27%), Positives = 106/240 (44%), Gaps = 37/240 (15%)
Query: 1267 LQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVD 1326
L++R + L + N+ GR ++G TG+GKS ++ I IV+P G + ++ D
Sbjct: 3 LKVRAEKRLGNFRLNVDFE-MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGAD 61
Query: 1327 ITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLD-PLVQYS----DKQVWEALDKCQLGDL 1380
IT + R +G +PQD LF +V N+ L D++V E +K + L
Sbjct: 62 ITPLPPE--RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHL 119
Query: 1381 VRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKI 1440
+ K +L S G+RQ L R L+ + +L+LDE SA D + +
Sbjct: 120 LDRKPARL-----------SGGERQRVALARALVIQPRLLLLDEPL----SAVDLKTKGV 164
Query: 1441 ISQEFKD---RTVVTIAHRIHTVID-------SDLVLVLSDGRIAEYDSPTKLLEREDSF 1490
+ +E + V I H H D +D V V+ +GRI E +L ++
Sbjct: 165 LMEELRFVQREFDVPILHVTH---DLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGE 221
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 4e-18
Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 54/225 (24%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKA----------- 698
+ G+ +++ G V + G GSGK+++L I G + G V I G +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90
Query: 699 YVPQS----PWILTGNIRENILFGNQYDSCK----YDRTVEACALVKDFELFASGDLTEI 750
V Q+ + + +N+ FG + R E ++ L
Sbjct: 91 LVFQNYALFQHM---TVYDNVSFGLREKRVPKDEMDARVRELLRFMR---------LESY 138
Query: 751 GERGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLM-------- 801
R + +SGGQ+QR+ +ARA+ + L D+PF+A+D Q+ ++ +
Sbjct: 139 ANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDT----QIRRE--LRTFVRQVH 192
Query: 802 ---GILKDKSVLYVTH-QVEFLPAADIILVMENGRIAQAGRFEEL 842
G+ + ++VTH Q E L AD +LV+ G + Q G EE+
Sbjct: 193 DEMGV----TSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 58/255 (22%), Positives = 105/255 (41%), Gaps = 51/255 (20%)
Query: 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSI 1320
TI F ++ Y ++ +S + VG++G +GSGK+T+++ I + PT G +
Sbjct: 14 TIEFVGVEKIYPGGAR-SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 1321 IIDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLDPLVQYS-----------DKQV 1368
I +T + R +G++ Q+ LF TV N V + D +V
Sbjct: 73 WIGGKRVTDLPPQK-R-NVGLVFQNYALFQHMTVYDN----VSFGLREKRVPKDEMDARV 126
Query: 1369 WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATAS 1428
E L +L +L S GQ+Q L R L + +L+ DE
Sbjct: 127 RELLRFMRLESYANRFPHEL-----------SGGQQQRVALARALAPRPQVLLFDEPF-- 173
Query: 1429 VDSATDGVIQKIISQEFKDRTVVTIAHRIH-TVI----D-------SDLVLVLSDGRIAE 1476
+A D I++ + + + + T + D +D VLVL +G + +
Sbjct: 174 --AAIDTQIRRELRTFVRQ-----VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ 226
Query: 1477 YDSPTKLLEREDSFF 1491
+ +P ++ E+ + F
Sbjct: 227 FGTPEEVYEKPGTLF 241
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 2e-17
Identities = 62/213 (29%), Positives = 103/213 (48%), Gaps = 33/213 (15%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-----------A 698
LD + LKV+ G I G G+GK+ L I G +G + + G A
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 699 YVPQS----PWILTGNIRENILFGNQYDSCKYDRTV-EACALVKDFELFASGDLTEIGER 753
+V Q+ P + N+++N+ FG + K + V + +K + + +R
Sbjct: 76 FVYQNYSLFPHM---NVKKNLEFGMRMKKIKDPKRVLDTARDLK---------IEHLLDR 123
Query: 754 GIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--KSVL 810
+SGG++QR+ +ARA+ + I LLD+P SA+D T + L + K +VL
Sbjct: 124 NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREM-LSVLHKKNKLTVL 182
Query: 811 YVTH-QVEFLPAADIILVMENGRIAQAGRFEEL 842
++TH Q E AD I V+ +G++ Q G+ EE+
Sbjct: 183 HITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 9e-07
Identities = 51/256 (19%), Positives = 96/256 (37%), Gaps = 60/256 (23%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I +L ++ L N+S + ++G TG+GK+ ++ I P G I+
Sbjct: 2 IEIESLSRKWKNF---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 1322 IDNVDITKIGLHDLRSR-LGIIPQDPTLFDG-TVRGNLDPLVQY--------SDKQVWEA 1371
+D D+T + + + Q+ +LF V+ N +++ K+V +
Sbjct: 59 LDGKDVTDLSPEK---HDIAFVYQNYSLFPHMNVKKN----LEFGMRMKKIKDPKRVLDT 111
Query: 1372 LDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDS 1431
++ L+ L S G++Q L R L+ IL+LDE S
Sbjct: 112 ARDLKIEHLLDRNPLTL-----------SGGEQQRVALARALVTNPKILLLDEPL----S 156
Query: 1432 ATDGVIQKIISQEFKDRTVVTIAHRIH-----TVI----D-------SDLVLVLSDGRIA 1475
A D Q+ + +H TV+ D +D + V+ DG++
Sbjct: 157 ALDPRTQENAREMLS---------VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI 207
Query: 1476 EYDSPTKLLEREDSFF 1491
+ P ++ E+
Sbjct: 208 QVGKPEEIFEKPVEGR 223
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 3e-17
Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 39/228 (17%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKA----------- 698
L GI +++ G + G G+GK++ L I I+ +G V + G
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90
Query: 699 -YVPQSP---WILTGNIRENILF-GNQYD---SCKYDRTVEACALVKDFELFASGDLTEI 750
Y+P+ + G E + F Y S + A + L E
Sbjct: 91 SYLPEEAGAYRNMQG--IEYLRFVAGFYASSSSEIEEMVERATEIA---------GLGEK 139
Query: 751 GERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD-KS 808
+ + S G +++ IARA+ + + +LD+P S +D + + L ++ +
Sbjct: 140 IKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLN-AREVRKILKQASQEGLT 198
Query: 809 VLYVTH---QVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLV 853
+L +H +VEFL D I ++ NG I + G EE LK+ + +
Sbjct: 199 ILVSSHNMLEVEFL--CDRIALIHNGTIVETGTVEE-LKERYKAQNIE 243
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 46/237 (19%), Positives = 102/237 (43%), Gaps = 28/237 (11%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ +L+ R + +LK IS + G++G G+GK+T ++ I +++P+ G +
Sbjct: 16 VVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLD--------PLVQYSDKQVWEAL 1372
+ ++ + H++R + +P++ + L + ++ V A
Sbjct: 74 VFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSE-IEEMVERAT 131
Query: 1373 DKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSA 1432
+ L EK+ V +S G + + R L+ + +LDE T+ +D
Sbjct: 132 EIAGL-------GEKIKDRV----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 180
Query: 1433 TDGVIQKIISQEFKDR--TVVTIAHRIHTV-IDSDLVLVLSDGRIAEYDSPTKLLER 1486
++KI+ ++ T++ +H + V D + ++ +G I E + +L ER
Sbjct: 181 NAREVRKIL-KQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 8e-15
Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 45/230 (19%)
Query: 643 PESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG--EIQKMAGTVKISG----- 695
+ LD + + ++ G + I G G+GK++ + I G G +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST--GELYFDDRLVAS 71
Query: 696 -TKAYVP----------QSPWIL--TGNIRENILFG---NQYDSCKYDRTV-EACALVKD 738
K VP Q+ W L ENI F + + + V E ++
Sbjct: 72 NGKLIVPPEDRKIGMVFQT-WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL-- 128
Query: 739 FELFASGDLTEIGERGIN-MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDA----HTGT 793
D+ + +SG Q+QR+ +ARA+ +D + LLD+PFS +DA
Sbjct: 129 -------DIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181
Query: 794 QLFKDCLMGILKDKSVLYVTH-QVEFLPAADIILVMENGRIAQAGRFEEL 842
+ + + L + V+H + AD + V+ G++ Q G+ E+L
Sbjct: 182 LVKE--VQSRLGVTLL-VVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 9e-06
Identities = 47/268 (17%), Positives = 95/268 (35%), Gaps = 71/268 (26%)
Query: 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSI 1320
I N+ + + L N++ ++ G++G +G+GK+T ++ I + P+ G +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1321 IIDNVDITKIGLHDLRSRLGIIPQD-------------PTLFDGTVRGNLDPLVQYS--- 1364
D+ + G + P+D P L T N + +
Sbjct: 63 YFDDRLVASNGKLIVP------PEDRKIGMVFQTWALYPNL---TAFEN----IAFPLTN 109
Query: 1365 --------DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKK 1416
K+V E + ++ +L S Q+Q L R L+K
Sbjct: 110 MKMSKEEIRKRVEEVAKILDIHHVLNHFPREL-----------SGAQQQRVALARALVKD 158
Query: 1417 SSILVLDEATASVDS----ATDGVIQKIISQEFKDRTV---------VTIAHRIHTVIDS 1463
S+L+LDE +++D+ + ++++ + + IA R+
Sbjct: 159 PSLLLLDEPFSNLDARMRDSARALVKE-VQSRLGVTLLVVSHDPADIFAIADRV------ 211
Query: 1464 DLVLVLSDGRIAEYDSPTKLLEREDSFF 1491
VL G++ + P L + S
Sbjct: 212 ---GVLVKGKLVQVGKPEDLYDNPVSIQ 236
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 61/225 (27%), Positives = 98/225 (43%), Gaps = 48/225 (21%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCI--LGEIQKMAGTVKISGTKAYVPQSPWIL 707
L GI + ++ G V + G GSGKS+ L C+ L + G + I G +
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD--EGEIIIDGINLKAKDTN--- 94
Query: 708 TGNIRENI--------LFGNQYDSCKYDRTV-EACAL----VK-----DFELFASGDLTE 749
+RE + LF + TV L V+ E A L +
Sbjct: 95 LNKVREEVGMVFQRFNLFPH--------MTVLNNITLAPMKVRKWPREKAEAKAMELLDK 146
Query: 750 IG--ERGINM----SGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCL--M 801
+G ++ SGGQ QR+ IARA+ + I L D+P SA+D ++ + L M
Sbjct: 147 VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP----EMVGEVLSVM 202
Query: 802 GILKDK--SVLYVTHQVEFL-PAADIILVMENGRIAQAGRFEELL 843
L ++ +++ VTH++ F D +L M+ G I + G+ E+L
Sbjct: 203 KQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 72/257 (28%), Positives = 110/257 (42%), Gaps = 43/257 (16%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I H L+ + VLK I+ + V V+G +GSGKST ++ + + + G II
Sbjct: 25 IDVHQLKKSFGSL--EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII 82
Query: 1322 IDNVDIT--KIGLHDLRSRLGIIPQDPTLF-DGTVRGN--LDPL-VQYSDKQVWEA---- 1371
ID +++ L+ +R +G++ Q LF TV N L P+ V+ ++ EA
Sbjct: 83 IDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAME 142
Query: 1372 -LDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD 1430
LDK L D A + L S GQ Q + R L + I++ DE T
Sbjct: 143 LLDKVGLKDKAHAYPDSL-----------SGGQAQRVAIARALAMEPKIMLFDEPT---- 187
Query: 1431 SATD-----GVIQKIISQEFKDRTVVTIAHRI---HTVIDSDLVLVLSDGRIAEYDSPTK 1482
SA D V+ + + T+V + H + V D VL + G I E P
Sbjct: 188 SALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREV--GDRVLFMDGGYIIEEGKPED 245
Query: 1483 LL-----EREDSFFSQL 1494
L ER +F S++
Sbjct: 246 LFDRPQHERTKAFLSKV 262
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 75.5 bits (185), Expect = 1e-13
Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 28/207 (13%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-AYVPQSPWI 706
L+ QL++KR + ICG G GKS+L+ I ++ G + YV
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG--QVDGFPTQEECRTVYVEHDI-- 504
Query: 707 LTGNIRENILFGNQYDSCKYDRTVEACALVKDF---ELFASGDLTEIGERGI-NMSGGQK 762
G D+ D E+ K+ +L G E+ I +SGG K
Sbjct: 505 ----------DGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWK 554
Query: 763 QRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DKSVLYVTHQVEFL- 819
++ +ARAV ++ADI LLD+P + +D L+ L + + ++H FL
Sbjct: 555 MKLALARAVLRNADILLLDEPTNHLDTVN-----VAWLVNYLNTCGITSITISHDSVFLD 609
Query: 820 PAADIILVMENGRIAQ-AGRFEELLKQ 845
+ I+ E ++ + G F E +K+
Sbjct: 610 NVCEYIINYEGLKLRKYKGNFTEFVKK 636
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 2e-07
Identities = 37/223 (16%), Positives = 74/223 (33%), Gaps = 41/223 (18%)
Query: 1264 FHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIID 1323
N + A +L ++ G+ G G GKSTL++AI G +
Sbjct: 436 LCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--GQVDGFPTQE 493
Query: 1324 NVDITKIGLHDLRSRLGIIPQDPTLFDG--TVRGNLDPLVQYSDKQVWEALDKCQLGDLV 1381
+ D +V + + + + + L +
Sbjct: 494 ECRT------------VYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF---- 537
Query: 1382 RAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKII 1441
+E + ++ S G + L R +L+ + IL+LDE T +D+ + +
Sbjct: 538 --TDEMIAMPISA----LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 591
Query: 1442 SQEFKDRTVVTIAHRIHTVIDSDL-------VLVLSDGRIAEY 1477
+ T +TI+H DS ++ ++ +Y
Sbjct: 592 NT--CGITSITISH------DSVFLDNVCEYIINYEGLKLRKY 626
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 6e-07
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 756 NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--KSVLYVT 813
+SGGQK ++ +A +Q + +LD+P + +D + L LK+ V+ +T
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS-----LGALSKALKEFEGGVIIIT 955
Query: 814 HQVEFLPA-ADIILVMENGRI 833
H EF + + +++GR+
Sbjct: 956 HSAEFTKNLTEEVWAVKDGRM 976
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 2e-05
Identities = 38/233 (16%), Positives = 82/233 (35%), Gaps = 14/233 (6%)
Query: 625 KGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEI 684
K + + V+V N +F + P +S P + I + ++A+ G G+GKS+L++ + GE+
Sbjct: 665 KTKQKAIVKVTNMEFQY-PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723
Query: 685 QKMAGTVKISGT--KAYVPQ-SPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFEL 741
+G V AY+ Q + + ++ + Q+ + +
Sbjct: 724 LPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINE 783
Query: 742 FASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLM 801
+ + +I + G +RI + + + Y + F + +M
Sbjct: 784 NDAEAMNKIFK-----IEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMM 838
Query: 802 GILKDKSVL--YVTHQVEFLPAADII--LVMENGRIAQAGRFEELLKQNIGFE 850
+ V + + D+ L R EE +G +
Sbjct: 839 SVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSM-LGLD 890
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 7e-05
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 1265 HNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIII-D 1323
N++ +Y + +I+ ++ V+G G+GKSTLI + + PT G + +
Sbjct: 675 TNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734
Query: 1324 NVDI 1327
N I
Sbjct: 735 NCRI 738
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 62/237 (26%), Positives = 106/237 (44%), Gaps = 60/237 (25%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCI--LGEIQKMAGTVKISGTK-AYVPQSPWI 706
L G+ L+ + G ++I G+ GSGKS+ L CI L + G + ++G V
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS--EGAIIVNGQNINLVRDKDGQ 79
Query: 707 LTGN-------IRENI--------LFGNQYDSCKYDRTV-----EACALVK-----DFEL 741
L +R + L+ + TV EA V D
Sbjct: 80 LKVADKNQLRLLRTRLTMVFQHFNLWSH--------MTVLENVMEAPIQVLGLSKHDARE 131
Query: 742 FASGDLTEIG--ERG-----INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQ 794
A L ++G ER +++SGGQ+QR+ IARA+ + D+ L D+P SA+D +
Sbjct: 132 RALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDP----E 187
Query: 795 LFKDCLMGILKD-----KSVLYVTHQVEFLPA---ADIILVMENGRIAQAGRFEELL 843
L + L I++ K+++ VTH++ F A + ++ + G+I + G E++
Sbjct: 188 LVGEVL-RIMQQLAEEGKTMVVVTHEMGF--ARHVSSHVIFLHQGKIEEEGDPEQVF 241
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 69/281 (24%), Positives = 113/281 (40%), Gaps = 69/281 (24%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ +L RY H VLK +S + ++G +GSGKST ++ I + +P+ G+II
Sbjct: 7 LHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 64
Query: 1322 IDNVDITKIG-------------LHDLRSRLGIIPQDPTLFDG-TVRGN--LDPL-VQYS 1364
++ +I + L LR+RL ++ Q L+ TV N P+ V
Sbjct: 65 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 124
Query: 1365 DKQVWEA-------LDKCQLGDLVRAKE-EKLDSTVAENGENWSVGQRQLFCLGRTLLKK 1416
K +A L K + + + K L S GQ+Q + R L +
Sbjct: 125 SKH--DARERALKYLAKVGIDERAQGKYPVHL-----------SGGQQQRVSIARALAME 171
Query: 1417 SSILVLDEATASVDSATD--------GVIQKIISQEFKDRT--VVTIAHRI---HTVIDS 1463
+L+ DE T SA D ++Q++ + +T VVT H + V S
Sbjct: 172 PDVLLFDEPT----SALDPELVGEVLRIMQQLAEE---GKTMVVVT--HEMGFARHV--S 220
Query: 1464 DLVLVLSDGRIAEYDSPTKLL-----EREDSFFSQLIKEYS 1499
V+ L G+I E P ++ R F +K+
Sbjct: 221 SHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLKKLE 261
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 4e-13
Identities = 65/222 (29%), Positives = 99/222 (44%), Gaps = 44/222 (19%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG--EIQKMAGTVKISGTK-------- 697
L+ I LK+K G +A+ G GSGKS+LL I G + G +
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTS--GKIYFDEKDVTELPPKD 74
Query: 698 ---AYVPQS----PWILTGNIRENILFG---NQYDSCKYDRTV-EACALVKDFELFASGD 746
V Q+ P + +NI F + + D+ V E ++
Sbjct: 75 RNVGLVFQNWALYP---HMTVYKNIAFPLELRKAPREEIDKKVREVAKML---------H 122
Query: 747 LTEIGERG-INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDA----HTGTQLFKDCLM 801
+ ++ R +SGGQ+QR+ IARA+ ++ ++ LLD+P S +DA +L + L
Sbjct: 123 IDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR--LQ 180
Query: 802 GILKDKSVLYVTH-QVEFLPAADIILVMENGRIAQAGRFEEL 842
L +V YVTH Q E L AD I V+ G I Q G +E+
Sbjct: 181 KELGITTV-YVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 1e-12
Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 55/221 (24%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQK-MAGTVKISGTKA---------- 698
L + L +K G V+I G GSGKS++L+ I+G + K G V I K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 699 -------YVPQS----PWILTGNIRENI----LFGNQYDSCKYDRTVEACALVKDFELFA 743
+V Q P + EN+ +F + +R A +K EL
Sbjct: 80 IRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAMSGEERRKRALECLKMAEL-- 134
Query: 744 SGDLTEIGERGIN-----MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKD 798
ER N +SGGQ+QR+ IARA+ + I L D P A+D+ TG +
Sbjct: 135 -------EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEK---- 183
Query: 799 CLMGILKD------KSVLYVTHQVEFLPAADIILVMENGRI 833
+M +LK K+V+ VTH + + I+ +++G +
Sbjct: 184 -IMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 38/227 (16%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG---LHD 1334
LKN++ + V ++G +GSGKST++ I + +PT G + IDN+ + L
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 1335 LRSR-LGIIPQD----PTLFDGTVRGNLD-PLVQYSD----------KQVWEALDKCQLG 1378
+R +G + Q P L T N++ PL+ + K+ E L +L
Sbjct: 80 IRRDKIGFVFQQFNLIPLL---TALENVELPLI-FKYRGAMSGEERRKRALECLKMAELE 135
Query: 1379 D-LVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVI 1437
+ K +L S GQ+Q + R L I++ D+ T ++DS T I
Sbjct: 136 ERFANHKPNQL-----------SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKI 184
Query: 1438 QKIISQ--EFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTK 1482
+++ + E +TVV + H I+ + ++ L DG + + +
Sbjct: 185 MQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER-EEKLR 230
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 4e-12
Identities = 57/221 (25%), Positives = 92/221 (41%), Gaps = 42/221 (19%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG--EIQKMAGTVKISGTK-------- 697
+DG+ +VK G VA+ G G GK++ L + G + G +
Sbjct: 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTS--GEIYFDDVLVNDIPPKY 74
Query: 698 ---AYVPQS----PWILTGNIRENILFG---NQYDSCKYDRTVEACALVKDFELFASGDL 747
V Q+ P + + ENI F + + ++ V A L +
Sbjct: 75 REVGMVFQNYALYPHM---TVFENIAFPLRARRISKDEVEKRVVEIARK----L----LI 123
Query: 748 TEIGERG-INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDA----HTGTQLFKDCLMG 802
+ +R +SGGQ+QR+ +ARA+ + + L D+P S +DA ++ L
Sbjct: 124 DNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH--LQQ 181
Query: 803 ILKDKSVLYVTH-QVEFLPAADIILVMENGRIAQAGRFEEL 842
L SV YVTH Q E + A I V G++ Q G +E+
Sbjct: 182 ELGITSV-YVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 6e-12
Identities = 61/358 (17%), Positives = 118/358 (32%), Gaps = 109/358 (30%)
Query: 1216 IIWNICNAENKMIS--VERILQ--YSNLPSEAPLVTEECRPPSN------------WPDV 1259
+ W + + + +M+ VE +L+ Y L S + E R PS + D
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSP---IKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 1260 GTISFHNLQIRYAEH--LPSVLKNISCTFPGRKKVGVVGRTGSGKSTL------------ 1305
+ +N+ R + L L + P K V + G GSGK+ +
Sbjct: 124 QVFAKYNVS-RLQPYLKLRQALLELR---PA-KNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 1306 -----------------------IQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGII 1342
+Q + ++P + D+ K+ +H +++ L +
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP-NWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 1343 PQDPTLFDGTVRGNLDPL--VQYSDKQVWEALD-KCQLGDLV--RAKEEKLDSTVAENGE 1397
+ + L L VQ + + W A + C++ L+ R V +
Sbjct: 238 LKSKPYENC-----LLVLLNVQ--NAKAWNAFNLSCKI--LLTTR------FKQVTDFLS 282
Query: 1398 NWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKD--RTVVTIAH 1455
+ +L S L DE ++ K + +D R V+T
Sbjct: 283 AATTTH-------ISLDHHSMTLTPDE--------VKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 1456 RIHTVIDSDLVLVLSDG--RIAEYDSPT--KLLEREDSFFSQLIKEYSMRSQNFNSVA 1509
R ++I + DG + KL +S + L + R + F+ ++
Sbjct: 328 RRLSII----AESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYR-KMFDRLS 379
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 1e-11
Identities = 109/708 (15%), Positives = 211/708 (29%), Gaps = 211/708 (29%)
Query: 772 YQDADIYLLDDPFSA-VDAHTGTQLFKDCLMGILKDKSV---LYVTHQVEFLPAADIILV 827
Y+D + + +D F D + +D IL + + + V L+
Sbjct: 18 YKDI-LSVFEDAFVDNFDC----KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 828 MENGRIAQAGRF-EELLKQNIGFEVLVGAHSQALESVLTVETSSRTSQDPTPESELNS-- 884
+ + Q +F EE+L+ N F L S + E + P+ + +
Sbjct: 73 SKQEEMVQ--KFVEEVLRINYKF----------LMSPIKTEQ-----RQPSMMTRMYIEQ 115
Query: 885 -DSTSNVKLVHSQHD-SEHELSLEITEKGGKLVQEEEREK-------GSIGKEVYWSYLT 935
D N V ++++ S + L++ + + E K GK +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQA----LLELRPAKNVLIDGVLGSGKTW----VA 167
Query: 936 AVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSS 995
+ + + F++ +W+ + + + T+L +
Sbjct: 168 LD---VCLSYKVQCKMDFKI------FWLNLKNCNSPE--------------TVLEMLQK 204
Query: 996 LCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGR---ILNRASNDQSVLD 1052
L + + + + KL +HS+ S P +L + V +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKL---RIHSIQAELRRLLKSKPYENCLLVLL----N--VQN 255
Query: 1053 LELAGRLGWCAFSI-IQILGT---IGVMSQVAWQVFV------------------IFIPV 1090
+ W AF++ +IL T V ++ + +
Sbjct: 256 AKA-----WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 1091 TGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLI 1150
++L R + P S+ + D + + N
Sbjct: 311 LDC----------RPQDLPREV-LTTNP----RRLSIIAESIRDGLATWDNWKHVN---C 352
Query: 1151 DNHSRPWFHNVSAMEWLCFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYGINLN 1210
D + +E LN+L + L P I
Sbjct: 353 DKLTT-------IIE-SS--LNVLEPAEYRKMFDRLSVFPPSA------------HIPTI 390
Query: 1211 VLQASIIWNICNAENKMISVERILQYSNLPSEAPLVTEECRPPSNWPDVGTISFHNLQIR 1270
+L S+IW + M+ V ++ +YS LV + P TIS ++ +
Sbjct: 391 LL--SLIWFDVIKSDVMVVVNKLHKYS-------LVEK-------QPKESTISIPSIYLE 434
Query: 1271 YAEHLPSVLK---------NISCTFPGRKKVGV---------VGR-----TGSGKSTLIQ 1307
L + NI TF + +G + TL +
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 1308 AI---FRIVEPTMGSIIIDNVDITKIG-----LHDLRS-RLGIIPQDPTLFDGTVRGNLD 1358
+ FR +E I D+ G L L+ + I DP ++ V LD
Sbjct: 495 MVFLDFRFLE---QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK-YERLVNAILD 550
Query: 1359 PLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQL 1406
L + E L + DL+R + +AE+ + +Q+
Sbjct: 551 FLPKIE-----ENLICSKYTDLLRI------ALMAEDEAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 1e-08
Identities = 65/475 (13%), Positives = 136/475 (28%), Gaps = 177/475 (37%)
Query: 584 DPIFNLPDLLSNI--------AQGKVSADRIAAYLQEDEIQRD------AVEYVPKGRS- 628
D I D +S ++ + + E+ ++ + ++ + S
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQE----EMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 629 --EFEVEVVNGKFSWNPE------SSSPTLDGIQ---LKVKRGMKVAICGTVGSGKSSLL 677
+E + ++ N S ++ L+++ V I G +GSGK+ +
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 678 SCIL---GEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACA 734
+ KM + + W+ N +
Sbjct: 168 LDVCLSYKVQCKMDFKI-------F-----WLNLKN---------------CNSPETVLE 200
Query: 735 LVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQ 794
+++ + T + N+ K RI Q LL +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNI----KLRIHSI----QAELRRLLKS-----------K 241
Query: 795 LFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVG 854
+++CL+ +L + V +N + A F N+ ++L+
Sbjct: 242 PYENCLL-VLLN--V-------------------QNAKAWNA--F------NLSCKILL- 270
Query: 855 AHSQALESVLTVETSSRTSQDPTPESELNSDSTSNVKLVHSQHDSEHELSLEITEKG-GK 913
T++ L++ +T+++ L H + + K
Sbjct: 271 -----------------TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 914 LVQEEERE--KGS------IGKEV--------YWSYLTAVKGGALVPIILLAQSSFQVLQ 957
Q+ RE + I + + W ++ K L II +SS VL+
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK---LTTII---ESSLNVLE 367
Query: 958 VA---SNYW-----------------MAWASPPTSDGEPALGMNIV--LLVYTLL 990
A + + W SD +V L Y+L+
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM-----VVVNKLHKYSLV 417
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 5e-08
Identities = 69/464 (14%), Positives = 133/464 (28%), Gaps = 141/464 (30%)
Query: 34 IVVQLGFLG----LLLLQLARTTLFRRLGADFRDLVVDKYPYGV---KLGICYKASMVSS 86
+++ G LG + L + ++ V K + + L C V
Sbjct: 153 VLID-GVLGSGKTWVALDVCL---------SYK--VQCKMDFKIFWLNLKNCNSPETV-- 198
Query: 87 TLIFGTHFIILLTVMLNTGGEAEAVCNSGILAFSSRIMQVVSWAST---LFLLCKIIPNS 143
+L ++ + + SS I + L K N
Sbjct: 199 -------LEMLQKLLYQIDPNWTSRSDH-----SSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 144 ----AHVKFPWILRAWWFCSFLFSILCTALHT--------YLRIRYRGQFRIQDYVD--- 188
+V+ A F++ C L T +L + +
Sbjct: 247 LLVLLNVQNAKAWNA-------FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 189 ---IIALLASTFLFGISIQG-----KTGLLLHTA--------SSDTTEPFLNVKADKQFK 232
+ +LL +L Q T + T + + +V DK
Sbjct: 300 PDEVKSLLLK-YL-DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK--- 354
Query: 233 SKRDSPYGKSTLLQLVTFSWLNP-----------LFAVGIKKP---LEL--DDIPDVDIK 276
+T+++ + + L P +F P L L D+ D+
Sbjct: 355 --------LTTIIE-SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 277 DSAEFLSNRFEQDLDLVKEKEGSTNPSIYKAIFFFIRKKAAINASF--AVINAATSYVGP 334
L LV+++ + SI +I+ ++ K + ++++
Sbjct: 406 VVVNKLHKYS-----LVEKQPKESTISIP-SIYLELKVKLENEYALHRSIVDH------- 452
Query: 335 YLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVET-IAQRQWIFGARQLGLRLRAALIS 393
Y I F +D Y + +G + +R +F R + L R
Sbjct: 453 YNIPK--TFDSDDLIPPYLDQYFYS--HIGHHLKNIEHPERMTLF--RMVFLDFR----- 501
Query: 394 HLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSNYMF 437
L +K + S + SG I+N + FY Y+
Sbjct: 502 FLEQK---IRHDSTAWNASGSILNT-------LQQLKFYKPYIC 535
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 2e-06
Identities = 60/403 (14%), Positives = 113/403 (28%), Gaps = 109/403 (27%)
Query: 255 PLFAVGIKKPLELDDIPDVDIKDSAEFLSNRFEQDLDLVKEKEGSTNPSIYKAIFFFIRK 314
+F + D+ D+ LS E D ++ K+ + + +F+ +
Sbjct: 23 SVFEDAFVDNFDCKDVQDM----PKSILSKE-EID-HIIMSKDAVS--GTLR-LFWTLLS 73
Query: 315 KAAINASFAVINAATSYVGPYLINDFVNFLTDK-----KSRSLESGYLLALAFLGAKMVE 369
K +V L ++ FL + S+
Sbjct: 74 KQE--------EMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMM-------------TRM 111
Query: 370 TIAQRQWIFGARQLGLRL---RAALISHLYRKGLHLSSQSRQSHTSGEIINYM-----SV 421
I QR ++ Q+ + R L R+ L +I+ + +
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKL-RQAL-----LELRPAKNVLIDGVLGSGKTW 165
Query: 422 ---------DVQRISDF-IFYSNYMFMLPVQISLAIYILRTNLGLGSLAALAATLTVMTC 471
VQ DF IF+ ++L L L L +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFW----------LNLK-NCNSPETVLEMLQKLLYQIDPNWT 214
Query: 472 NIPITRIQKRFQSKIMDAKDNRMRATSE--------VLKNMKTLKLQAWDTRFLQKLESL 523
+ + +I + R VL N+ + +
Sbjct: 215 SRS--DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-------QNAKAWNAFN-- 263
Query: 524 RQVECIWLWKSL---RLSATSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFR 580
+ C K L R + F+ + T IS+ + LT V S L +
Sbjct: 264 --LSC----KILLTTRFKQVTDFLSAATTTHISLDH----HSMT--LTPDEVKSLLLKY- 310
Query: 581 MLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEIQRDAVEYV 623
L +LP + ++S IA +++ D ++V
Sbjct: 311 -LDCRPQDLPREVLTTNPRRLSI--IAESIRDGLATWDNWKHV 350
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 8e-12
Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 44/222 (19%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG--EIQKMAGTVKISGTK-------- 697
++ + L +K G + + G G GK++ L I G E + G +
Sbjct: 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE--GRIYFGDRDVTYLPPKD 82
Query: 698 ---AYVPQS----PWILTGNIRENILFG---NQYDSCKYDRTV-EACALVKDFELFASGD 746
+ V QS P + + ENI F ++ + D+ V A L+
Sbjct: 83 RNISMVFQSYAVWPHM---TVYENIAFPLKIKKFPKDEIDKRVRWAAELL---------Q 130
Query: 747 LTEIGERG-INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDA----HTGTQLFKDCLM 801
+ E+ R +SGGQ+QR+ +ARA+ + D+ L+D+P S +DA ++ K L
Sbjct: 131 IEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK--LQ 188
Query: 802 GILKDKSVLYVTH-QVEFLPAADIILVMENGRIAQAGRFEEL 842
LK ++ YVTH QVE + D I VM G++ Q G E+
Sbjct: 189 QKLKVTTI-YVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 2e-10
Identities = 52/216 (24%), Positives = 93/216 (43%), Gaps = 32/216 (14%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG---LHD 1334
+LK IS + + V ++G +GSGKSTL+ + + PT G + ++ ++ L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 1335 LRSR-LGIIPQD----PTLFDGTVRGNLD-PLVQYSD-------KQVWEALDKCQLGDLV 1381
LR+R LG + Q P L T N+ P++ ++ L + LGD +
Sbjct: 79 LRNRKLGFVFQFHYLIPEL---TALENVIVPML-KMGKPKKEAKERGEYLLSELGLGDKL 134
Query: 1382 RAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKII 1441
K +L S G++Q + R L + +L DE T ++DSA + I
Sbjct: 135 SRKPYEL-----------SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIF 183
Query: 1442 SQEFKD-RTVVTIAHRIHTVIDSDLVLVLSDGRIAE 1476
+ + ++V + H + L + DG++
Sbjct: 184 LKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 5e-09
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD-----KSVLY 811
+SGG++QR+ IARA+ + + D+P +D+ + +M I S++
Sbjct: 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR-----VMDIFLKINEGGTSIVM 195
Query: 812 VTHQVEFLPAADIILVMENGRI 833
VTH+ E L M++G++
Sbjct: 196 VTHERELAELTHRTLEMKDGKV 217
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 2e-10
Identities = 63/228 (27%), Positives = 99/228 (43%), Gaps = 50/228 (21%)
Query: 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG--EIQKMAGTVKISG-------TKA 698
+ + L+VK G + + G G GK++ L I G E + G + I
Sbjct: 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR--GQIYIGDKLVADPEKGI 74
Query: 699 YVP----------QS----PWILTGNIRENILFG---NQYDSCKYDRTV-EACALVKDFE 740
+VP QS P + + +NI F + + D+ V E L+
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHM---TVYDNIAFPLKLRKVPRQEIDQRVREVAELL---- 127
Query: 741 LFASGDLTEIGERG-INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDA----HTGTQL 795
LTE+ R +SGGQ+QR+ + RA+ + ++L+D+P S +DA +L
Sbjct: 128 -----GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL 182
Query: 796 FKDCLMGILKDKSVLYVTH-QVEFLPAADIILVMENGRIAQAGRFEEL 842
K L L ++ YVTH QVE + D I VM G + Q G +E+
Sbjct: 183 KK--LQRQLGVTTI-YVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 60.9 bits (149), Expect = 3e-10
Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 38/176 (21%)
Query: 1266 NLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNV 1325
+L + Y +K I P + V ++G G+GK+T + AI +V G II +
Sbjct: 11 SLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ 68
Query: 1326 DITKIGLHDLRSRLGII--PQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQLGDLVR 1382
DIT H +R+GI P+ +F TV NL +G R
Sbjct: 69 DITNKPAHV-INRMGIALVPEGRRIFPELTVYENL------------------MMGAYNR 109
Query: 1383 AKEEKLDSTVAE--------------NGENWSVGQRQLFCLGRTLLKKSSILVLDE 1424
+E + + G S G++Q+ +GR L+ + +L++DE
Sbjct: 110 KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 1e-09
Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 56/229 (24%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
+ GI LKV RG V + G G+GK++ LS I G ++ G + +G
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 698 --AYVPQSPWI---LTGNIRENILFG--NQYDSCKYDRTVEACALVKDFELFASGDLTE- 749
A VP+ I LT + EN++ G N+ D R +E F LF L E
Sbjct: 82 GIALVPEGRRIFPELT--VYENLMMGAYNRKDKEGIKRDLE-----WIFSLFP--RLKER 132
Query: 750 IGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSA------VDAHTGTQLFKDCLMGI 803
+ + G +SGG++Q + I RA+ + ++D+P S V ++F+ +
Sbjct: 133 LKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEP-SLGLAPILVS-----EVFE-----V 181
Query: 804 LKD-----KSVLYV---THQVEFLPAADIILVMENGRIAQAGRFEELLK 844
++ ++L V L A V+E G+I G+ ELL
Sbjct: 182 IQKINQEGTTILLVEQNALGA--LKVAHYGYVLETGQIVLEGKASELLD 228
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 1e-09
Identities = 54/205 (26%), Positives = 83/205 (40%), Gaps = 26/205 (12%)
Query: 1292 VGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIP--QDPTLF 1349
++G GSGKSTLI I ++ G + +N DIT +L GI+ Q P
Sbjct: 36 TLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGIVRTFQTPQPL 94
Query: 1350 DG-TVRGN-LDPLVQYSDKQVWEALDKCQLGDLVRAKEE------------KLDSTVAEN 1395
TV N L + + + + +EE KL
Sbjct: 95 KEMTVLENLLIGEICPGESPLNSLF----YKKWIPKEEEMVEKAFKILEFLKLSHLYDRK 150
Query: 1396 GENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDR--TVVTI 1453
S GQ +L +GR L+ ++V+DE A V I + E K + T + I
Sbjct: 151 AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHV-LELKAKGITFLII 209
Query: 1454 AHRIHTVID-SDLVLVLSDGR-IAE 1476
HR+ V++ D + V+ +G+ IAE
Sbjct: 210 EHRLDIVLNYIDHLYVMFNGQIIAE 234
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 5e-07
Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 35/226 (15%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709
LDG+ + V +G I G GSGKS+L++ I G ++ G V K + P L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN-KDITNKEPAELYH 81
Query: 710 --------NIR--------ENILFGNQYDSCKY---------DRTVEACALVKDFELFAS 744
+ EN+L G + + E + K F++
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIG-EICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 745 GDLTEI-GERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI 803
L+ + + +SGGQ + ++I RA+ + + ++D+P + V +F +
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN--HVLE 198
Query: 804 LKDK--SVLYVTHQVEF-LPAADIILVMENGR-IAQAGRFEELLKQ 845
LK K + L + H+++ L D + VM NG+ IA+ GR EE +K
Sbjct: 199 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE-GRGEEEIKN 243
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 2e-09
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 14/94 (14%)
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDA----HTGTQLFKDCLMGILKDK---SV 809
+SGGQ+QR+ I R + + ++LLD+P S +DA ++ + L + ++
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR------LHKRLGRTM 187
Query: 810 LYVTH-QVEFLPAADIILVMENGRIAQAGRFEEL 842
+YVTH QVE + AD I+V++ GR+AQ G+ EL
Sbjct: 188 IYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 2e-04
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 757 MSGGQKQRIQIA------RAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD-KSV 809
+SGG++ + +A + + + +LD+P +D +L + LK V
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKL-ITIMERYLKKIPQV 307
Query: 810 LYVTHQVEFLPAAD--IILVMENG 831
+ V+H E AAD I + +ENG
Sbjct: 308 ILVSHDEELKDAADHVIRISLENG 331
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1513 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 4e-71 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 4e-57 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-67 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-55 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 5e-64 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-49 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-61 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-56 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-61 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-51 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-60 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-50 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-33 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-24 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 6e-33 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-30 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-32 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-26 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-32 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-30 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-29 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-26 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-28 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-26 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-28 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 7e-25 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-27 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-27 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 9e-27 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-25 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-26 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-25 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-24 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-24 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-24 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-21 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-23 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 5e-22 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-16 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-16 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 7e-14 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 1e-12 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 3e-10 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 5e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-07 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-06 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-04 | |
| d1svia_ | 195 | c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti | 0.002 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 0.002 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 236 bits (603), Expect = 4e-71
Identities = 74/242 (30%), Positives = 128/242 (52%), Gaps = 2/242 (0%)
Query: 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
G I ++ +Y ++ +LK+I+ + + V VG +G GKSTLI I R + T G
Sbjct: 15 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 74
Query: 1320 IIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL-DPLVQYSDKQVWEALDKCQLG 1378
I+ID +I LR+++G++ QD LF TV+ N+ +D++V EA
Sbjct: 75 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAH 134
Query: 1379 DLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQ 1438
D + + D+ V E G S GQ+Q + R L IL+LDEAT+++D ++ +IQ
Sbjct: 135 DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 194
Query: 1439 KIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEY 1498
+ + KDRT + +AHR+ T+ +D ++V+ +G I E + +L+ + + L
Sbjct: 195 EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYSIQ 253
Query: 1499 SM 1500
++
Sbjct: 254 NL 255
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 196 bits (500), Expect = 4e-57
Identities = 76/260 (29%), Positives = 126/260 (48%), Gaps = 22/260 (8%)
Query: 617 RDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSL 676
++ V P + +++ + F + ++ +P L I L +++G VA G G GKS+L
Sbjct: 2 KNGVGAQPIEIKQGRIDIDHVSFQY-NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTL 60
Query: 677 LSCILGEIQKMAGTVKISGTK-------------AYVPQSPWILTGNIRENILFGNQYDS 723
++ I +G + I G V Q + + ++ENIL G +
Sbjct: 61 INLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTAT 120
Query: 724 CKYDRTVEACALV--KDF-ELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLL 780
+ VEA + DF G TE+GERG+ +SGGQKQR+ IAR + I +L
Sbjct: 121 --DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILIL 178
Query: 781 DDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFE 840
D+ SA+D + + ++ L + KD++ L V H++ + AD I+V+ENG I + G
Sbjct: 179 DEATSALDLES-ESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHR 237
Query: 841 ELLKQNIGFEVLVGAHSQAL 860
EL+ + +E L Q L
Sbjct: 238 ELIAKQGAYEHLY--SIQNL 255
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 224 bits (573), Expect = 5e-67
Identities = 83/239 (34%), Positives = 134/239 (56%), Gaps = 3/239 (1%)
Query: 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
G + F N+ Y L+NI+ P K V +VGR+GSGKST+ I R + G
Sbjct: 12 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 71
Query: 1320 IIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGN--LDPLVQYSDKQVWEALDKCQL 1377
I++D D+ + L LR+++ ++ Q+ LF+ TV N +YS +Q+ EA
Sbjct: 72 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 131
Query: 1378 GDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVI 1437
D + + LD+ + ENG S GQRQ + R LL+ S IL+LDEAT+++D+ ++ I
Sbjct: 132 MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191
Query: 1438 QKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIK 1496
Q + + K+RT + IAHR+ T+ +D ++V+ DG I E + ++LL + ++QL K
Sbjct: 192 QAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHK 249
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 190 bits (484), Expect = 5e-55
Identities = 70/238 (29%), Positives = 111/238 (46%), Gaps = 21/238 (8%)
Query: 624 PKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGE 683
G EF N F++ P P L I LK+ G VA+ G GSGKS++ S I
Sbjct: 10 ATGDLEFR----NVTFTY-PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 64
Query: 684 IQKMAGTVKISGTK-------------AYVPQSPWILTGNIRENILFGN--QYDSCKYDR 728
G + + G A V Q+ + + NI + +Y + +
Sbjct: 65 YDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEE 124
Query: 729 TVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVD 788
+ +G T IGE G+ +SGGQ+QRI IARA+ +D+ I +LD+ SA+D
Sbjct: 125 AARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 184
Query: 789 AHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846
+ + L + K+++ L + H++ + AD I+V+E+G I + G ELL Q+
Sbjct: 185 TESERAIQ-AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH 241
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 215 bits (549), Expect = 5e-64
Identities = 78/236 (33%), Positives = 129/236 (54%), Gaps = 1/236 (0%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I+F N++ RY P +L NI+ + + +G+VGR+GSGKSTL + I R P G ++
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL-DPLVQYSDKQVWEALDKCQLGDL 1380
ID D+ + LR ++G++ QD L + ++ N+ S ++V A D
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 1381 VRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKI 1440
+ E ++ V E G S GQRQ + R L+ IL+ DEAT+++D ++ VI +
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 1441 ISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIK 1496
+ + K RTV+ IAHR+ TV ++D ++V+ G+I E +LL +S +S L +
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 173 bits (441), Expect = 2e-49
Identities = 67/229 (29%), Positives = 104/229 (45%), Gaps = 16/229 (6%)
Query: 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT 690
++ N +F + S LD I L +K+G + I G GSGKS+L I G
Sbjct: 1 DITFRNIRFRY-KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 691 VKISGTK-------------AYVPQSPWILTGNIRENILFGNQ-YDSCKYDRTVEACALV 736
V I G V Q +L +I +NI N K +
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 737 KDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLF 796
G T +GE+G +SGGQ+QRI IARA+ + I + D+ SA+D + +
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 797 KDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ 845
+ I K ++V+ + H++ + AD I+VME G+I + G+ +ELL +
Sbjct: 180 -RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 227
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 210 bits (536), Expect = 1e-61
Identities = 101/279 (36%), Positives = 151/279 (54%), Gaps = 6/279 (2%)
Query: 601 VSADRIAAYLQEDEIQRDAVEYVPKGRSEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRG 660
+ + + A+ +E + G + + N FS +P L I L +++G
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKG 62
Query: 661 MKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQ 720
+AI G+ GSGK+SLL ILGE++ G +K SG ++ Q WI+ G I+ENI+FG
Sbjct: 63 EMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVS 122
Query: 721 YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLL 780
YD +Y V+AC L +D FA D T +GE G+ +SGGQ+ RI +ARAVY+DAD+YLL
Sbjct: 123 YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLL 182
Query: 781 DDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFE 840
D PF +D T Q+F+ C+ ++ +K+ + VT ++E L AD IL++ G G F
Sbjct: 183 DSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFS 242
Query: 841 ELLKQNIGF-EVLVGAH-----SQALESVLTVETSSRTS 873
EL F L+G ++ S + ET R S
Sbjct: 243 ELQSLRPDFSSKLMGYDTFDQFTEERRSSILTETLRRFS 281
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 195 bits (498), Expect = 1e-56
Identities = 55/248 (22%), Positives = 106/248 (42%), Gaps = 18/248 (7%)
Query: 1254 SNWPDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIV 1313
+ D +SF +L + VLKNI+ + + + G TGSGK++L+ I +
Sbjct: 31 KHSSDENNVSFSHLCLVGNP----VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL 86
Query: 1314 EPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALD 1373
E + G I R+ Q + GT++ N+ V Y + + +
Sbjct: 87 EASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVK 133
Query: 1374 KCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT 1433
CQL + E+ ++ + E G S GQR L R + K + + +LD +D T
Sbjct: 134 ACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 193
Query: 1434 -DGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFS 1492
+ V + + + ++T + + ++ + +D +L+L G Y + ++L F S
Sbjct: 194 EEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSS 253
Query: 1493 QLIKEYSM 1500
+L+ +
Sbjct: 254 KLMGYDTF 261
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 208 bits (531), Expect = 2e-61
Identities = 58/242 (23%), Positives = 120/242 (49%), Gaps = 6/242 (2%)
Query: 1260 GTISFHNLQIRYAEHL-PSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMG 1318
G + F ++ Y VL+ ++ T + +VG GSGKST+ + + +PT G
Sbjct: 10 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGG 69
Query: 1319 SIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL--DPLVQYSDKQVWEALDKCQ 1376
+++D + + L ++ + Q+P +F +++ N+ + + +++ A K
Sbjct: 70 QLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSG 129
Query: 1377 LGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGV 1436
+ + D+ V E G S GQRQ L R L++K +L+LD+AT+++D+ +
Sbjct: 130 AHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQ 189
Query: 1437 IQKII--SQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQL 1494
+++++ S E R+V+ I + V +D +L L G I E + +L+E+ + +
Sbjct: 190 VEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCYWAM 248
Query: 1495 IK 1496
++
Sbjct: 249 VQ 250
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 178 bits (453), Expect = 6e-51
Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 18/242 (7%)
Query: 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT 690
V+ + F++ L G+ ++ G A+ G GSGKS++ + + Q G
Sbjct: 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 70
Query: 691 VKISGTK-------------AYVPQSPWILTGNIRENILFGNQYDSCKYD--RTVEACAL 735
+ + G A V Q P + +++ENI +G +
Sbjct: 71 LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGA 130
Query: 736 VKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQL 795
G TE+ E G +SGGQ+Q + +ARA+ + + +LDD SA+DA++ Q+
Sbjct: 131 HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 190
Query: 796 FKDCLMGILK--DKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLV 853
L + +SVL +T + + AD IL +E G I + G ++L+++ + +V
Sbjct: 191 E-QLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMV 249
Query: 854 GA 855
A
Sbjct: 250 QA 251
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 204 bits (521), Expect = 4e-60
Identities = 75/238 (31%), Positives = 124/238 (52%), Gaps = 4/238 (1%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+S ++ Y + +L++IS + G +G GKST+ + R +PT G I
Sbjct: 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLD--PLVQYSDKQVWEALDKCQLGD 1379
ID I I L + RS++G + QD + GT+R NL Y+D+ +W+ LD
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 1380 LVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQK 1439
V ++L++ V E G S GQRQ + R L+ IL+LDEATAS+DS ++ ++QK
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 1440 IISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKE 1497
+ K RT + IAHR+ T++D+D + + G+I +L+ +++ + E
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSE 237
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 176 bits (447), Expect = 3e-50
Identities = 60/230 (26%), Positives = 110/230 (47%), Gaps = 18/230 (7%)
Query: 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691
+ + F+++ S L I + + +A G G GKS++ S + Q AG +
Sbjct: 2 LSARHVDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 692 KISGTK-------------AYVPQSPWILTGNIRENILFG--NQYDSCKYDRTVEACALV 736
I G +V Q I+ G IREN+ +G Y + ++
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 737 KDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLF 796
E TE+GERG+ +SGGQ+QR+ IARA ++ I +LD+ +++D+ + + +
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV- 178
Query: 797 KDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQN 846
+ L ++K ++ L + H++ + AD I +E G+I +G+ EL+ +
Sbjct: 179 QKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH 228
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 126 bits (319), Expect = 4e-33
Identities = 66/241 (27%), Positives = 113/241 (46%), Gaps = 27/241 (11%)
Query: 1262 ISFHNLQIRYAEHLPSV--LKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
I N+ + + ++ L N+S P + GV+G +G+GKSTLI+ + + PT GS
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1320 IIIDNVDITKIGLHD---LRSRLGIIPQDPTLF-DGTVRGNLD-PLVQY------SDKQV 1368
+++D ++T + + R ++G+I Q L TV GN+ PL ++V
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1369 WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATAS 1428
E L LGD + L S GQ+Q + R L +L+ DEAT++
Sbjct: 122 TELLSLVGLGDKHDSYPSNL-----------SGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 1429 VDSATDGVIQKIIS--QEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485
+D AT I +++ T++ I H + V D V V+S+G + E D+ +++
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 1486 R 1486
Sbjct: 231 H 231
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 101 bits (253), Expect = 2e-24
Identities = 50/216 (23%), Positives = 92/216 (42%), Gaps = 25/216 (11%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
L+ + L V G + G G+GKS+L+ C+ + G+V + G +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 698 ----AYVPQSPWIL-TGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGE 752
+ Q +L + + N+ + D+ D E V EL + L + +
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD---EVKRRVT--ELLSLVGLGDKHD 135
Query: 753 RGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCL-MGILKDKSVL 810
N+SGGQKQR+ IARA+ + + L D+ SA+D T + + + ++L
Sbjct: 136 SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTIL 195
Query: 811 YVTHQVEF-LPAADIILVMENGRIAQAGRFEELLKQ 845
+TH+++ D + V+ NG + + E+
Sbjct: 196 LITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 126 bits (317), Expect = 6e-33
Identities = 52/243 (21%), Positives = 109/243 (44%), Gaps = 26/243 (10%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ NL R+ + + ++ T + + ++G +G GK+T ++ I + EPT G I
Sbjct: 7 VKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLDPLVQYS-------DKQVWEALD 1373
+ D+T L + ++ Q ++ TV N+ ++ DK+V A +
Sbjct: 65 FGDRDVTY--LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE 122
Query: 1374 KCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT 1433
Q+ +L+ +L S GQRQ + R ++ + +L++DE +++D+
Sbjct: 123 LLQIEELLNRYPAQL-----------SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL 171
Query: 1434 DGVIQKIIS--QEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDSF 1490
++ I Q+ T + + H + D + V++ G++ + SPT++ R +S
Sbjct: 172 RVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSV 231
Query: 1491 FSQ 1493
F
Sbjct: 232 FVA 234
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 119 bits (299), Expect = 2e-30
Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 22/212 (10%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-----------A 698
++ + L +K G + + G G GK++ L I G + G + +
Sbjct: 22 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 81
Query: 699 YVPQSPWILTG-NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGI-N 756
V QS + + ENI F + D E V+ + E+ R
Sbjct: 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKD---EIDKRVR--WAAELLQIEELLNRYPAQ 136
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKD--KSVLYVTH 814
+SGGQ+QR+ +ARA+ + D+ L+D+P S +DA + + + + + +YVTH
Sbjct: 137 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMR-AEIKKLQQKLKVTTIYVTH 195
Query: 815 QVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845
D I VM G++ Q G E+ +
Sbjct: 196 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 125 bits (315), Expect = 2e-32
Identities = 59/249 (23%), Positives = 109/249 (43%), Gaps = 36/249 (14%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ +L RY H VLK +S + ++G +GSGKST ++ I + +P+ G+II
Sbjct: 3 LHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 1322 IDNVDITKIGLHD-------------LRSRLGIIPQDPTLFDG-TVRGNLD--PLVQYS- 1364
++ +I + D LR+RL ++ Q L+ TV N+ P+
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120
Query: 1365 -----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSI 1419
++ + L K + + + K + S GQ+Q + R L + +
Sbjct: 121 SKHDARERALKYLAKVGIDERAQGK----------YPVHLSGGQQQRVSIARALAMEPDV 170
Query: 1420 LVLDEATASVDSATDGVIQKIISQEFK-DRTVVTIAHRIHTVID-SDLVLVLSDGRIAEY 1477
L+ DE T+++D G + +I+ Q + +T+V + H + S V+ L G+I E
Sbjct: 171 LLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 230
Query: 1478 DSPTKLLER 1486
P ++
Sbjct: 231 GDPEQVFGN 239
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 107 bits (269), Expect = 2e-26
Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 30/224 (13%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT--------KAYVP 701
L G+ L+ + G ++I G+ GSGKS+ L CI + G + ++G +
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 702 QSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASG--------------DL 747
+ +R + Q+ + TV V + + G
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLEN--VMEAPIQVLGLSKHDARERALKYLAK 135
Query: 748 TEIGERGIN-----MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMG 802
I ER +SGGQ+QR+ IARA+ + D+ L D+P SA+D ++ +
Sbjct: 136 VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL 195
Query: 803 ILKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845
+ K+++ VTH++ F + ++ + G+I + G E++
Sbjct: 196 AEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 239
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 123 bits (309), Expect = 6e-32
Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 17/232 (7%)
Query: 1262 ISFHNLQIRYA--EHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
I N+ Y E + LKN++ + V ++G +GSGKST++ I + +PT G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1320 IIIDNVDITKIGLHDL----RSRLGIIPQDPTLFDG-TVRGN--LDPLVQYSDKQVWEAL 1372
+ IDN+ + +L R ++G + Q L T N L + +Y E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1373 DK--CQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD 1430
K + + +E + + S GQ+Q + R L I++ D+ T ++D
Sbjct: 122 RKRALECLKMAELEERFANHKPNQ----LSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 1431 SATDGVIQKIISQEFKDR--TVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSP 1480
S T I +++ + ++ TVV + H I+ + ++ L DG + +
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 119 bits (299), Expect = 1e-30
Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 32/233 (13%)
Query: 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT 690
+++ V + E L + L +K G V+I G GSGKS++L+ I + G
Sbjct: 3 KLKNVTKTYK-MGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 691 VKISGTK-----------------AYVPQSPWILTG-NIRENILFGNQYDSCKYDRTVEA 732
V I K +V Q ++ EN+ + E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 733 CALVKDFELFASGDLTEIGERGIN-----MSGGQKQRIQIARAVYQDADIYLLDDPFSAV 787
+ + E+ ER N +SGGQ+QR+ IARA+ + I L D P A+
Sbjct: 122 RKRALECL-----KMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGAL 176
Query: 788 DAHTGTQLFKDCLMGILKD--KSVLYVTHQVEFLPAADIILVMENGRIAQAGR 838
D+ TG ++ L + ++ K+V+ VTH + + I+ +++G + + +
Sbjct: 177 DSKTGEKIM-QLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 116 bits (291), Expect = 2e-29
Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 25/221 (11%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKA----------- 698
LDG+ + V +G I G GSGKS+L++ I G ++ G V
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 699 ---YVPQSPWILTG-NIRENILFGNQYDSCKYDRTV--------EACALVKDFELFASGD 746
Q+P L + EN+L G ++ E + K F++
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 747 LTEIGERGI-NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK 805
L+ + +R +SGGQ + ++I RA+ + + ++D+P + V +F L K
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 806 DKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845
+ L + H+++ + D + VM NG+I GR EE +K
Sbjct: 200 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 107 bits (269), Expect = 2e-26
Identities = 51/238 (21%), Positives = 89/238 (37%), Gaps = 15/238 (6%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ N+ + E L +S + ++G GSGKSTLI I ++ G +
Sbjct: 5 LRTENIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 1322 IDNVDITKIGLHDL-RSRLGIIPQDPTLFDG-TVRGNLDPLVQYSDKQVWEALDKCQLGD 1379
+N DIT +L + Q P TV NL + +L +
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 1380 LVRAKEEKLDSTVAENG---------ENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD 1430
EK + S GQ +L +GR L+ ++V+DE A V
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 182
Query: 1431 -SATDGVIQKIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486
+ ++ + K T + I HR+ V++ D + V+ +G+I + ++
Sbjct: 183 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 113 bits (283), Expect = 2e-28
Identities = 49/212 (23%), Positives = 87/212 (41%), Gaps = 16/212 (7%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------KAYVPQ 702
+ + L+VK G + + G G GK++ L I G + G + I +VP
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 703 SPWILTGNIRENILF------GNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGIN 756
+ + L+ N K + + E+ LTE+ R
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR 138
Query: 757 -MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCL-MGILKDKSVLYVTH 814
+SGGQ+QR+ + RA+ + ++L+D+P S +DA ++ + + + +YVTH
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198
Query: 815 QVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845
D I VM G + Q G +E+ +
Sbjct: 199 DQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 106 bits (267), Expect = 3e-26
Identities = 46/240 (19%), Positives = 104/240 (43%), Gaps = 28/240 (11%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ ++ + E ++ +S + + ++G +G GK+T ++ I + EP+ G I
Sbjct: 4 VRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 1322 IDNVDIT----KIGLHDLRSRLGIIPQDPTLFDG-TVRGNLDPLVQYS-------DKQVW 1369
I + + I + + ++ Q L+ TV N+ ++ D++V
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR 121
Query: 1370 EALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASV 1429
E + L +L+ K +L S GQRQ LGR +++K + ++DE +++
Sbjct: 122 EVAELLGLTELLNRKPREL-----------SGGQRQRVALGRAIVRKPQVFLMDEPLSNL 170
Query: 1430 DSATDGVIQKIIS--QEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486
D+ ++ + Q T + + H + D + V++ G + + SP ++ ++
Sbjct: 171 DAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 112 bits (282), Expect = 2e-28
Identities = 42/222 (18%), Positives = 79/222 (35%), Gaps = 22/222 (9%)
Query: 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337
L +S + + +VG G+GKSTL+ + + GSI + L
Sbjct: 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLAL 72
Query: 1338 RLGIIPQDPTL-FDGTVRGNL-DPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAEN 1395
+ Q T F V L + ++ + A LD + +
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDV----------AGALALDDKLGRS 122
Query: 1396 GENWSVGQRQLFCLGRTLLK-------KSSILVLDEATASVDSATDGVIQKIISQ-EFKD 1447
S G+ Q L +L+ +L+LDE S+D A + KI+S +
Sbjct: 123 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQG 182
Query: 1448 RTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERED 1488
+V +H ++ + + +L G++ ++L +
Sbjct: 183 LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 224
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 102 bits (256), Expect = 7e-25
Identities = 44/222 (19%), Positives = 94/222 (42%), Gaps = 30/222 (13%)
Query: 645 SSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------- 696
+ S L + +V+ G + + G G+GKS+LL+ + G + G+++ +G
Sbjct: 10 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSAT 68
Query: 697 -----KAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIG 751
+AY+ Q + L +Q+D + + + + ++G
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL--------ALDDKLG 120
Query: 752 ERGINMSGGQKQRIQIARAVYQ-------DADIYLLDDPFSAVDAHTGTQLFKDCLMGIL 804
+SGG+ QR+++A V Q + LLD+P +++D + L K
Sbjct: 121 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ 180
Query: 805 KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845
+ +++ +H + A +++ G++ +GR EE+L
Sbjct: 181 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 110 bits (276), Expect = 2e-27
Identities = 50/212 (23%), Positives = 87/212 (41%), Gaps = 20/212 (9%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
+ GI LKV RG V + G G+GK++ LS I G ++ G + +G
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 698 --AYVPQSPWIL-TGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERG 754
A VP+ I + EN++ G K + + F + + G
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE----RLKQLG 137
Query: 755 INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTH 814
+SGG++Q + I RA+ + ++D+P + +++F+ + ++L V
Sbjct: 138 GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQ 197
Query: 815 QVEF-LPAADIILVMENGRIAQAGRFEELLKQ 845
L A V+E G+I G+ ELL
Sbjct: 198 NALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 103 bits (258), Expect = 4e-25
Identities = 50/231 (21%), Positives = 95/231 (41%), Gaps = 10/231 (4%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ +L + Y +K I P + V ++G G+GK+T + AI +V G II
Sbjct: 7 LEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 1322 IDNVDITKIGLHDLRSR-LGIIPQDPTLF-DGTVRGNLDPLVQYSDKQVWEALDKCQLGD 1379
+ DIT H + + ++P+ +F + TV NL + D +
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFS 124
Query: 1380 LVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD-SATDGVIQ 1438
L +E+L S G++Q+ +GR L+ + +L++DE + + V +
Sbjct: 125 LFPRLKERLKQLGGT----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE 180
Query: 1439 KIISQEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERED 1488
I + T++ + + + VL G+I ++LL+ E
Sbjct: 181 VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEM 231
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 108 bits (270), Expect = 4e-27
Identities = 46/214 (21%), Positives = 92/214 (42%), Gaps = 27/214 (12%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ +L + Y + VL+ I+ T V G G GK+TL++ I ++P G II
Sbjct: 3 LEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLDPL-----VQYSDKQVWEALDKC 1375
+ V I ++ ++ +P++ + +V L + V+ + ++ +AL+
Sbjct: 60 YNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 114
Query: 1376 QLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG 1435
++ D + + S G + L TLL + I VLD+ ++D +
Sbjct: 115 EVLD------------LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKH 162
Query: 1436 VIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVL 1469
+ K I + K++ +V I+ R + D+ L
Sbjct: 163 KVLKSILEILKEKGIVIISSR-EELSYCDVNENL 195
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 102 bits (255), Expect = 4e-25
Identities = 38/208 (18%), Positives = 93/208 (44%), Gaps = 26/208 (12%)
Query: 633 EVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVK 692
E+ + ++ P L+ I + +++G V G G GK++LL I ++ + G +
Sbjct: 4 EIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 693 ISGTK--------AYVPQSP-WILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFA 743
+G ++P+ ++ + + K ++ + +
Sbjct: 60 YNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKN-------EIMDALE 112
Query: 744 SGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI 803
S ++ ++ ++ +S G +R+Q+A + +A+IY+LDDP A+D + ++ K ++ I
Sbjct: 113 SVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS-ILEI 171
Query: 804 LKDK--SVLYVTHQVEFLPAADIILVME 829
LK+K ++ ++ + D+ +
Sbjct: 172 LKEKGIVIISSREELSY---CDVNENLH 196
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 108 bits (270), Expect = 9e-27
Identities = 48/252 (19%), Positives = 108/252 (42%), Gaps = 29/252 (11%)
Query: 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319
G + +L+ R + +LK IS + G++G G+GK+T ++ I +++P+ G
Sbjct: 1 GAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 1320 IIIDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLDPLVQYS-------DKQVWEA 1371
+ + H++R + +P++ + L + + ++ V A
Sbjct: 59 VTVFG-KNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA 117
Query: 1372 LDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDS 1431
+ LG+ ++ + S G + + R L+ + +LDE T+ +D
Sbjct: 118 TEIAGLGEKIKDRVSTY-----------SKGMVRKLLIARALMVNPRLAILDEPTSGLDV 166
Query: 1432 ATDGVIQKIISQEFKD-RTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDS 1489
++KI+ Q ++ T++ +H + V D + ++ +G I E + +L ER +
Sbjct: 167 LNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 226
Query: 1490 -----FFSQLIK 1496
F +++K
Sbjct: 227 QNIEEVFEEVVK 238
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 103 bits (259), Expect = 3e-25
Identities = 45/211 (21%), Positives = 84/211 (39%), Gaps = 20/211 (9%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
L GI +++ G + G G+GK++ L I I+ +G V + G
Sbjct: 18 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77
Query: 698 AYVPQSPWILTG-NIRENILFG-NQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGI 755
+Y+P+ E + F Y S + + L +R
Sbjct: 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----DRVS 132
Query: 756 NMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQ 815
S G +++ IARA+ + + +LD+P S +D ++ K + ++L +H
Sbjct: 133 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN 192
Query: 816 VEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845
+ + D I ++ NG I + G EEL ++
Sbjct: 193 MLEVEFLCDRIALIHNGTIVETGTVEELKER 223
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 107 bits (268), Expect = 2e-26
Identities = 60/246 (24%), Positives = 112/246 (45%), Gaps = 27/246 (10%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
+ N+ + E + V K+I+ + V VG +G GKSTL++ I + T G +
Sbjct: 1 VQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDG-TVRGNLDPLVQYS-------DKQVWEALD 1373
I + +G++ Q L+ +V N+ ++ + +++V + +
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 116
Query: 1374 KCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSAT 1433
QL L+ K + L S GQRQ +GRTL+ + S+ +LDE +++D+A
Sbjct: 117 VLQLAHLLDRKPKAL-----------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 165
Query: 1434 DGVIQKIIS--QEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER-EDS 1489
++ IS + RT++ + H + +D ++VL GR+A+ P +L D
Sbjct: 166 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 225
Query: 1490 FFSQLI 1495
F + I
Sbjct: 226 FVAGFI 231
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 103 bits (259), Expect = 2e-25
Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 20/211 (9%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK-----------A 698
I L + G V G G GKS+LL I G +G + I +
Sbjct: 16 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVG 75
Query: 699 YVPQSPWILTG-NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGI-N 756
V QS + ++ EN+ FG + K + V ++ L + +R
Sbjct: 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKE---VINQRVN--QVAEVLQLAHLLDRKPKA 130
Query: 757 MSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDK-SVLYVTHQ 815
+SGGQ+QR+ I R + + ++LLD+P S +DA Q+ + + +++YVTH
Sbjct: 131 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 190
Query: 816 VEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845
AD I+V++ GR+AQ G+ EL
Sbjct: 191 QVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 102 bits (254), Expect = 1e-24
Identities = 49/233 (21%), Positives = 96/233 (41%), Gaps = 24/233 (10%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I +L ++ L N+S + ++G TG+GK+ ++ I P G I+
Sbjct: 2 IEIESLSRKWKNF---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 1322 IDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRG-----NLDPLVQYSDKQVWEALDKCQ 1376
+D D+T L + + + Q+ +LF + K+V + +
Sbjct: 59 LDGKDVTD--LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116
Query: 1377 LGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGV 1436
+ L+ L S G++Q L R L+ IL+LDE +++D T
Sbjct: 117 IEHLLDRNPLTL-----------SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 1437 IQKIIS--QEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486
++++S + TV+ I H +D + V+ DG++ + P ++ E+
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 100 bits (250), Expect = 4e-24
Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 19/209 (9%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-----------KA 698
LD + LKV+ G I G G+GK+ L I G +G + + G A
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 699 YVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMS 758
+V Q+ + L ++ K +D ++ D + +S
Sbjct: 76 FVYQN-YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-----RNPLTLS 129
Query: 759 GGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCL-MGILKDKSVLYVTHQVE 817
GG++QR+ +ARA+ + I LLD+P SA+D T + + +VL++TH
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT 189
Query: 818 F-LPAADIILVMENGRIAQAGRFEELLKQ 845
AD I V+ +G++ Q G+ EE+ ++
Sbjct: 190 EARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 100 bits (251), Expect = 4e-24
Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 11/232 (4%)
Query: 1267 LQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVD 1326
L++R + L + N+ GR ++G TG+GKS ++ I IV+P G + ++ D
Sbjct: 3 LKVRAEKRLGNFRLNVDFE-MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGAD 61
Query: 1327 ITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEE 1386
IT L R +G +PQD LF + + + E + +
Sbjct: 62 ITP--LPPERRGIGFVPQDYALFPHLSVYR-NIAYGLRNVERVERDRRVREMAEKLGIAH 118
Query: 1387 KLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIIS--QE 1444
LD A S G+RQ L R L+ + +L+LDE ++VD T GV+ + + Q
Sbjct: 119 LLDRKPAR----LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174
Query: 1445 FKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495
D ++ + H + +D V V+ +GRI E +L ++ ++ +
Sbjct: 175 EFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 92.8 bits (230), Expect = 2e-21
Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 26/211 (12%)
Query: 649 TLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK----------- 697
L+ + ++ R + G G+GKS L I G ++ G V+++G
Sbjct: 15 RLN-VDFEMGRDY-CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGI 72
Query: 698 AYVPQSPWILTG-NIRENILFGNQYDSCK--YDRTVEACALVKDFELFASGDLTEIGERG 754
+VPQ + ++ NI +G + R E + L + +
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHL--------LDRKP 124
Query: 755 INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCL-MGILKDKSVLYVT 813
+SGG++QR+ +ARA+ + LLD+P SAVD T L ++ + D +L+VT
Sbjct: 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184
Query: 814 HQVEFLPA-ADIILVMENGRIAQAGRFEELL 843
H + AD + VM NGRI + G+ +EL
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKELF 215
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 97.8 bits (243), Expect = 3e-23
Identities = 48/233 (20%), Positives = 98/233 (42%), Gaps = 13/233 (5%)
Query: 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321
I N+ + + L N++ ++ G++G +G+GK+T ++ I + P+ G +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 1322 IDNVDITKIGLHDLRSR---LGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLG 1378
D+ + G + +G++ Q L+ NL + + K ++
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYP-----NLTAFENIAFPLTNMKMSKEEIR 118
Query: 1379 DLVRAKEEKLDSTVAENGE--NWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGV 1436
V + LD N S Q+Q L R L+K S+L+LDE +++D+
Sbjct: 119 KRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178
Query: 1437 IQKIIS--QEFKDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486
+ ++ Q T++ ++H + +D V VL G++ + P L +
Sbjct: 179 ARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 94.8 bits (235), Expect = 5e-22
Identities = 49/218 (22%), Positives = 86/218 (39%), Gaps = 29/218 (13%)
Query: 650 LDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTK------------ 697
LD + + ++ G + I G G+GK++ + I G G +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 698 ----AYVPQS----PWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTE 749
V Q+ P + L + + + VE A + D + E
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRE 140
Query: 750 IGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCL-MGILKDKS 808
+SG Q+QR+ +ARA+ +D + LLD+PFS +DA + +
Sbjct: 141 -------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
Query: 809 VLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845
+L V+H + A AD + V+ G++ Q G+ E+L
Sbjct: 194 LLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 75.8 bits (185), Expect = 3e-16
Identities = 19/198 (9%), Positives = 42/198 (21%), Gaps = 28/198 (14%)
Query: 1291 KVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFD 1350
K+ + G G GK+TL++ I + + V + + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 1351 GTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLG 1410
+ Q +E
Sbjct: 62 KFFTSKKLVGSYGVNVQYFE----------------------------ELAIPILERAYR 93
Query: 1411 RTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLS 1470
+ ++++DE + + VV + L
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 1471 DGRIAEYDSPTKLLERED 1488
+ E + + ED
Sbjct: 154 GAVLIELTPENRDVILED 171
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 75.4 bits (184), Expect = 5e-16
Identities = 20/178 (11%), Positives = 44/178 (24%), Gaps = 16/178 (8%)
Query: 661 MKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQ 720
MK+ I G G GK++L+ I+ + K A +R+
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEE---------------VRDPETKKRT 45
Query: 721 YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLL 780
+ K F + + A + ++
Sbjct: 46 GFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIII 105
Query: 781 DDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGR 838
D+ + +M + +V+ + P I + + +
Sbjct: 106 DEIGKMELFSKKFRDLVRQIMHD-PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.7 bits (169), Expect = 7e-14
Identities = 21/173 (12%), Positives = 50/173 (28%), Gaps = 7/173 (4%)
Query: 1290 KKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLF 1349
+ V + G G GK+TLI +++ + + + + G + + +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 1350 DGTVRGNLDPLV------QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQ 1403
D +E L L + + V + +
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 1404 RQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHR 1456
+ R L ++L ++++I +++ VT +R
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPL-ALVEEIRNRKDVKVFNVTKENR 173
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 68.4 bits (165), Expect = 1e-12
Identities = 34/317 (10%), Positives = 110/317 (34%), Gaps = 8/317 (2%)
Query: 304 IYKAIFFFI---RKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLAL 360
++ ++ I + + ++NAA+ L+ ++ K RS+ + L
Sbjct: 3 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSV--LLWMPL 60
Query: 361 AFLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMS 420
+G ++ I + + ++ + L+ + + ++G +++ ++
Sbjct: 61 VVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRIT 120
Query: 421 VDVQRISDFIFYSNYMFMLPVQ-ISLAIYILRTNLGLGSLAALAATLTVMTCNIPITRIQ 479
D ++++ + + I ++ S+ + V +++
Sbjct: 121 YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF 180
Query: 480 KRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSA 539
+ + + + ++LK K + + ++ + + + K + S+
Sbjct: 181 RSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 240
Query: 540 --TSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIA 597
S V+ + + LTAG + ++ L P+ +L ++ +
Sbjct: 241 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 300
Query: 598 QGKVSADRIAAYLQEDE 614
+G + + A L ++
Sbjct: 301 RGMAACQTLFAILDSEQ 317
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 61.1 bits (146), Expect = 3e-10
Identities = 47/322 (14%), Positives = 102/322 (31%), Gaps = 11/322 (3%)
Query: 304 IYKAIFFFI---RKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLAL 360
+ K F+ + + +I + P LI ++ + + + + +
Sbjct: 1 MIKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLT 60
Query: 361 AFLGAKMVETIAQRQWIFGARQLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMS 420
+G + + R I RQ + + I + RK L+ Q+ +
Sbjct: 61 IAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQV 120
Query: 421 VDVQRISDFIFYSNYMFMLP------VQISLAIYILRTNLGLGSLAALAATLTVMTCNIP 474
+ + L + I +A+ I+ +LAAL +
Sbjct: 121 ISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYV 180
Query: 475 ITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKS 534
++ + A E ++ + +K A + + + K
Sbjct: 181 FFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240
Query: 535 LRLSA--TSAFIFWGSPTFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDL 592
R +A +A I V+ GA + + +T G + + + +L P+ L
Sbjct: 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVAS 300
Query: 593 LSNIAQGKVSADRIAAYLQEDE 614
+ + Q S DR+ + ED
Sbjct: 301 FTTLTQSFASMDRVFQLIDEDY 322
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 48.0 bits (112), Expect = 5e-06
Identities = 41/321 (12%), Positives = 98/321 (30%), Gaps = 10/321 (3%)
Query: 930 YWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWA-------SPPTSDGEPALGMNI 982
Y ++ K II+ + + + +A T+D +
Sbjct: 5 YLQFVKPYKYRIFATIIVGIIKF--GIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIA 62
Query: 983 VLLVYTLLTVGSSLCVLLRAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILN 1042
+ + + + +R L T + + + + + F+ + G++++
Sbjct: 63 IGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVIS 122
Query: 1043 RASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIFIPVTGICIWYQQYYI 1102
R ND + L I I+ + +M + ++ + + + I +
Sbjct: 123 RVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFF 182
Query: 1103 PTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVS 1162
R+L R A + E + G + + +F ED N +
Sbjct: 183 GRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTR 242
Query: 1163 AMEWLCFRLNLLSNFVFAFSLVVLVTL-PEGIINPSIAGLAVTYGINLNVLQASIIWNIC 1221
+ +N +++ + V L G I V Y L ++ +
Sbjct: 243 WNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFT 302
Query: 1222 NAENKMISVERILQYSNLPSE 1242
S++R+ Q + +
Sbjct: 303 TLTQSFASMDRVFQLIDEDYD 323
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Score = 39.0 bits (89), Expect = 0.002
Identities = 10/45 (22%), Positives = 23/45 (51%)
Query: 1267 LQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFR 1311
+++ +E + S +K G ++ + GR+ GKS+ I ++
Sbjct: 1 MKVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLIN 45
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 38.5 bits (88), Expect = 0.002
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 656 KVKRGMKVAICGTVGSGKSSLLSCILGE 683
++ +KVAI G GKS+L + IL +
Sbjct: 4 EITDAIKVAIVGRPNVGKSTLFNAILNK 31
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1513 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.97 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.95 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.94 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.94 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.92 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.69 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.64 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.53 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.36 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.36 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.32 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.21 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.06 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.92 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.68 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.6 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.5 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 97.36 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.08 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.78 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.61 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.57 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.49 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.47 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.09 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.91 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.91 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.85 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.81 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 95.76 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.75 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 95.66 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.6 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.58 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.52 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.51 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.41 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.18 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.15 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.06 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.04 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.94 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.93 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.92 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.92 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.9 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.77 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.75 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.64 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 94.49 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.41 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.36 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.36 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.31 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.29 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.29 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.26 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.2 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.15 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.09 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.05 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.04 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.93 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.89 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.89 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 93.87 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.84 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.83 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.76 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.75 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.71 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.71 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 93.6 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.59 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.58 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.58 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 93.58 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 93.56 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.54 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.49 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.46 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.44 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.42 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.42 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.4 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.39 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.33 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.23 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.08 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.07 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.97 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.92 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.86 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 92.84 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 92.83 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 92.8 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.7 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.6 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 92.6 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 92.55 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 92.55 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 92.5 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 92.45 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 92.36 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.29 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 92.21 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.17 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.14 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.13 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.04 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 91.99 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 91.92 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.9 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 91.8 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.78 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.78 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.78 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 91.76 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.74 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 91.7 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.67 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.66 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 91.62 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 91.62 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.59 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 91.58 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 91.44 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 91.43 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 91.41 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 91.38 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.34 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.33 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 91.15 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 91.11 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 91.1 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 91.03 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.03 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 90.92 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 90.86 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 90.86 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 90.85 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 90.8 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 90.73 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 90.71 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 90.57 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 90.55 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.54 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 90.48 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.47 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 90.44 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.38 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 90.36 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.36 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 90.28 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 90.23 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 90.21 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.21 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 90.2 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 90.2 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.16 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.06 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.0 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.91 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 89.86 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 89.84 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 89.82 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.77 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 89.76 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 89.68 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 89.55 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 89.55 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.49 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 89.45 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 89.3 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 89.25 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.23 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 89.19 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.18 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 89.16 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 89.1 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 89.06 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.04 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 89.02 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 89.0 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.99 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.93 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 88.88 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 88.87 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 88.74 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.6 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.52 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 88.44 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 88.41 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 88.38 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.26 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.24 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 88.16 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 88.06 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 88.03 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 87.92 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 87.9 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 87.84 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 87.8 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 87.79 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 87.75 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 87.73 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 87.68 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 87.66 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 87.63 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 87.45 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 87.36 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 87.28 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 87.26 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 87.22 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 87.18 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 87.16 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 87.15 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 87.14 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 87.05 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 87.04 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 87.03 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 87.01 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 87.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 86.99 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 86.95 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 86.94 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 86.93 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 86.92 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 86.9 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.89 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.86 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 86.83 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 86.83 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 86.83 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 86.8 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 86.8 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 86.8 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 86.76 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 86.73 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 86.6 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 86.58 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 86.55 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 86.53 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 86.49 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 86.48 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 86.42 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 86.38 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 86.37 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 86.34 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 86.3 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 86.3 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 86.24 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 86.24 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 86.14 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 86.07 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 86.05 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 86.0 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 86.0 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 85.99 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 85.98 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 85.96 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.95 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 85.85 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 85.84 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.83 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 85.8 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 85.78 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 85.74 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 85.58 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 85.55 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 85.52 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 85.51 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 85.5 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 85.49 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 85.47 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 85.37 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 85.33 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 85.32 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 85.27 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 85.24 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 85.23 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 85.23 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 85.22 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 85.18 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 85.14 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 85.14 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 85.12 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 85.1 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 85.08 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 85.08 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 85.05 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 85.05 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 84.94 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 84.94 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 84.92 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 84.8 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 84.79 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 84.73 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 84.69 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 84.63 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 84.63 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 84.62 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 84.6 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 84.58 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 84.56 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 84.51 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 84.49 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 84.45 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 84.45 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 84.41 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 84.41 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 84.37 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 84.35 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 84.3 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 84.26 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 84.24 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 84.16 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 84.13 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 84.12 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 84.1 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 84.08 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 84.07 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 83.99 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 83.99 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 83.95 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 83.9 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 83.9 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 83.86 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 83.81 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 83.79 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 83.71 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 83.69 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 83.67 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 83.67 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 83.65 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 83.61 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 83.57 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 83.55 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 83.55 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 83.49 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 83.46 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 83.33 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 83.27 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 83.22 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 83.14 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 83.01 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 83.0 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 82.94 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 82.92 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 82.85 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 82.78 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 82.66 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 82.5 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 82.38 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 82.35 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 82.29 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 82.24 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 82.23 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 82.19 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 82.08 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 82.07 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 82.02 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 82.02 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 81.98 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 81.89 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 81.62 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 81.6 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 81.52 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 81.43 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 81.4 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 81.3 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 81.25 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 81.1 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 81.07 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 80.98 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 80.96 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 80.94 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 80.9 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 80.83 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 80.78 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 80.7 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 80.2 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 80.05 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=499.87 Aligned_cols=238 Identities=33% Similarity=0.518 Sum_probs=230.7
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEE
Q ss_conf 07998789997699895200115896289299998699998989999995057899748999385279999577620008
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i~ 1340 (1513)
+|+|+||+|+|+++.+++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||+|+++++.+++|++++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EECCCCCCCCCCHHHCCCCCC-CCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 874777546676755048799-9999999999998499389985110221010049998890599999999997059988
Q 000432 1341 IIPQDPTLFDGTVRGNLDPLV-QYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSI 1419 (1513)
Q Consensus 1341 iIpQdp~LF~GTIR~NLdp~~-~~sdeei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~~I 1419 (1513)
+|||+|.+|+||||+|+.... .+++++++++++.+++.+++..+|.|+++.++++|.+||||||||+|||||++++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 98244655784000352235755438889999999755788876320134432787886698898987544344416513
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHHH
Q ss_conf 9985677799998799999999985599389986159135752197999949889673492589712883999999998
Q 000432 1420 LVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKEY 1498 (1513)
Q Consensus 1420 LiLDEaTsslD~~Td~~Iq~~ir~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~l~~~~ 1498 (1513)
++||||||++|+.|+..|.+.|++..+++|+|+||||++++..||||+||++|+|+|+|+|++|++++++.|.+|++..
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHH
T ss_conf 5564776555989999999999998589989999788999984999999989999998899999829987899999981
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=499.30 Aligned_cols=240 Identities=31% Similarity=0.495 Sum_probs=230.8
Q ss_pred CCCCEEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 99740799878999769989520011589628929999869999898999999505789974899938527999957762
Q 000432 1257 PDVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLR 1336 (1513)
Q Consensus 1257 p~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR 1336 (1513)
..+|.|+|+||+|+|+++.+++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+.+|
T Consensus 12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 77887999988999599997606443899839989999889998099999999712786300015399875307888863
Q ss_pred HCEEEECCCCCCCCCCHHHCCCCC-CCCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 000887477754667675504879-9999999999999849938998511022101004999889059999999999705
Q 000432 1337 SRLGIIPQDPTLFDGTVRGNLDPL-VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLK 1415 (1513)
Q Consensus 1337 ~~i~iIpQdp~LF~GTIR~NLdp~-~~~sdeei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr 1415 (1513)
++++++||+|.+|+||||+||... ...+|+++++|++.+++.+++..+|+|+||.++++|.+||||||||+|||||+++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHH
Q ss_conf 99889985677799998799999999985599389986159135752197999949889673492589712883999999
Q 000432 1416 KSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495 (1513)
Q Consensus 1416 ~~~ILiLDEaTsslD~~Td~~Iq~~ir~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~l~ 1495 (1513)
+|+|++||||||++|++|+..|.+.|++..+++|+|+||||++++..||||++|++|+|+|.|+|++|+++ ++.|++|+
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~~l~ 250 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLY 250 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHH
T ss_conf 99899983765447977999999999987538889999689999985999999989999998899999868-84999999
Q ss_pred HH
Q ss_conf 99
Q 000432 1496 KE 1497 (1513)
Q Consensus 1496 ~~ 1497 (1513)
+.
T Consensus 251 ~~ 252 (255)
T d2hyda1 251 SI 252 (255)
T ss_dssp TT
T ss_pred HH
T ss_conf 97
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=490.58 Aligned_cols=239 Identities=35% Similarity=0.548 Sum_probs=229.9
Q ss_pred CCCEEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH
Q ss_conf 97407998789997699895200115896289299998699998989999995057899748999385279999577620
Q 000432 1258 DVGTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS 1337 (1513)
Q Consensus 1258 ~~g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~ 1337 (1513)
..|.|+|+||+|+|+++..++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.|||.|+++++.+++|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CEEEECCCCCCCCCCHHHCCCCC--CCCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 00887477754667675504879--9999999999999849938998511022101004999889059999999999705
Q 000432 1338 RLGIIPQDPTLFDGTVRGNLDPL--VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLK 1415 (1513)
Q Consensus 1338 ~i~iIpQdp~LF~GTIR~NLdp~--~~~sdeei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr 1415 (1513)
+++++||+|.+|++|+++|+... ..++++++++|++.+++.+++..+|+|||+.++++|.+||||||||+||||||++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHH
Q ss_conf 99889985677799998799999999985599389986159135752197999949889673492589712883999999
Q 000432 1416 KSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495 (1513)
Q Consensus 1416 ~~~ILiLDEaTsslD~~Td~~Iq~~ir~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~l~ 1495 (1513)
+|+||+||||||++|++|+..|++.|++..+++|+|+|+||++++..||+|+||++|+|+|+|+|++|+++ ++.|++|+
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~~l~ 248 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLH 248 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHH
T ss_conf 99889951644458988999999999875227889999887999985999999989999998899999868-93999999
Q ss_pred HH
Q ss_conf 99
Q 000432 1496 KE 1497 (1513)
Q Consensus 1496 ~~ 1497 (1513)
+.
T Consensus 249 ~~ 250 (253)
T d3b60a1 249 KM 250 (253)
T ss_dssp HH
T ss_pred HH
T ss_conf 97
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=477.94 Aligned_cols=239 Identities=23% Similarity=0.408 Sum_probs=226.1
Q ss_pred CCCCEEEEEEEEEEECCC-CCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 997407998789997699-8952001158962892999986999989899999950578997489993852799995776
Q 000432 1257 PDVGTISFHNLQIRYAEH-LPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL 1335 (1513)
Q Consensus 1257 p~~g~I~~~nvs~~Y~~~-~~~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~L 1335 (1513)
+.+|.|+|+||+|+|+.. ..++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.|||.|+++++.+.+
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HHCEEEECCCCCCCCCCHHHCCCCC--CCCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 2000887477754667675504879--99999999999998499389985110221010049998890599999999997
Q 000432 1336 RSRLGIIPQDPTLFDGTVRGNLDPL--VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1336 R~~i~iIpQdp~LF~GTIR~NLdp~--~~~sdeei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARAL 1413 (1513)
|+++++|||+|.+|++|||+|+... ...++++++++.+++++.+++..+|+|+++.++++|.+||||||||+|||||+
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf 87765404565002763465545421013027889999999989999985612111367516766895470489986044
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHH
Q ss_conf 059988998567779999879999999998559--938998615913575219799994988967349258971288399
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEFK--DRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFF 1491 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTsslD~~Td~~Iq~~ir~~f~--~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f 1491 (1513)
+++|+|++||||||++|+.|+..|++.|++..+ ++|+|+|+||++++..||||+||++|+|+|.|+|++|+++ ++.|
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y 245 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHH
T ss_conf 568707871675765685368999999999765069899999597999985999999989999998899999859-7588
Q ss_pred HHHHH
Q ss_conf 99999
Q 000432 1492 SQLIK 1496 (1513)
Q Consensus 1492 ~~l~~ 1496 (1513)
++|++
T Consensus 246 ~~l~~ 250 (251)
T d1jj7a_ 246 WAMVQ 250 (251)
T ss_dssp HHHHC
T ss_pred HHHHC
T ss_conf 99962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=484.71 Aligned_cols=234 Identities=32% Similarity=0.576 Sum_probs=225.4
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEE
Q ss_conf 79987899976998952001158962892999986999989899999950578997489993852799995776200088
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i~i 1341 (1513)
|+++||+|+|+++ +++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||.|+++++.+.+|+++++
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 7999889987999-841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred ECCCCCCCCCCHHHCCCCC--CCCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 7477754667675504879--99999999999998499389985110221010049998890599999999997059988
Q 000432 1342 IPQDPTLFDGTVRGNLDPL--VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSI 1419 (1513)
Q Consensus 1342 IpQdp~LF~GTIR~NLdp~--~~~sdeei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~~I 1419 (1513)
|||||.+|+||||+|+... ...++++++++++.+++.+++..+|+++++.++++|.+||||||||+|||||++++|+|
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred ECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 75665457853454301244555423567789999975554203742101523687898799999999999998529989
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHH
Q ss_conf 998567779999879999999998559938998615913575219799994988967349258971288399999999
Q 000432 1420 LVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIKE 1497 (1513)
Q Consensus 1420 LiLDEaTsslD~~Td~~Iq~~ir~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~l~~~ 1497 (1513)
|+||||||++|++++..|++.|++..+++|+|+|+||++++..||||+||++|+|+|.|+|++|+++ ++.|++|+++
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~ 237 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSE 237 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHC
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHHH
T ss_conf 9965886556988999998878887179989999787999984999999989999999999999868-9699999999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=448.42 Aligned_cols=226 Identities=30% Similarity=0.485 Sum_probs=211.9
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------
Q ss_conf 852399996799808999999401304897178399999258974999999981695687738999794-----------
Q 000432 628 SEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT----------- 696 (1513)
Q Consensus 628 ~~~~I~~~~~sf~w~~~~~~~~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~----------- 696 (1513)
..+.|+++|++|+|++. ..|+|+||||+|++|+++||+|++|||||||+++|+|+++|.+|+|.++|.
T Consensus 13 ~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 78879999889995999-97606443899839989999889998099999999712786300015399875307888863
Q ss_pred --EEEECCCCCCCCCCHHHHHCCCCC-CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf --899927876667647898704999-99147999999982077884322899730137998777479999999998702
Q 000432 697 --KAYVPQSPWILTGNIRENILFGNQ-YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQ 773 (1513)
Q Consensus 697 --~ayv~Q~~wi~~gTIreNIlfG~~-~d~~~y~~vi~ac~L~~dl~~lp~Gd~T~IGE~G~nLSGGQkQRIaLARAly~ 773 (1513)
++||+|+|++|++||+|||+||.+ .++++..++++.|.+.++++.+|+|++|.+||+|.+|||||||||+||||+|+
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHH
Q ss_conf 99789860767788977799999999834209937999805989612388899993986978159688984183079999
Q 000432 774 DADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLV 853 (1513)
Q Consensus 774 ~adI~lLDDp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~~~G~~~eLl~~~~~f~~l~ 853 (1513)
+|+|+|||||||+||++++..++ +.+..+.+++|+|+|||+++.++.||+|++|++|+|++.|+|+||+++++.|.+++
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~-~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l~ 250 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQ-EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLY 250 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHH-HHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHH
T ss_conf 99899983765447977999999-99998753888999968999998599999998999999889999986884999999
Q ss_pred HH
Q ss_conf 86
Q 000432 854 GA 855 (1513)
Q Consensus 854 ~~ 855 (1513)
+.
T Consensus 251 ~~ 252 (255)
T d2hyda1 251 SI 252 (255)
T ss_dssp TT
T ss_pred HH
T ss_conf 97
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=444.75 Aligned_cols=224 Identities=31% Similarity=0.456 Sum_probs=209.6
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE-------------E
Q ss_conf 399996799808999999401304897178399999258974999999981695687738999794-------------8
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------K 697 (1513)
Q Consensus 631 ~I~~~~~sf~w~~~~~~~~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~-------------~ 697 (1513)
+|+|+|++|+|+++ .+++|+||||+|++|+++||+|++|||||||+++|+|+++|.+|+|.++|. +
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEECCCCCCCCCCHHHHHCCCCC-CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99927876667647898704999-99147999999982077884322899730137998777479999999998702997
Q 000432 698 AYVPQSPWILTGNIRENILFGNQ-YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDAD 776 (1513)
Q Consensus 698 ayv~Q~~wi~~gTIreNIlfG~~-~d~~~y~~vi~ac~L~~dl~~lp~Gd~T~IGE~G~nLSGGQkQRIaLARAly~~ad 776 (1513)
+||+|+|++|++||+|||.|+.+ .+.+++.++++.|.+.++++.+|.|++|.+|++|.+|||||||||+||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHC-CCCHHHHHHH
Q ss_conf 898607677889777999999998342099379998059896123888999939869781596889841-8307999986
Q 000432 777 IYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQ-NIGFEVLVGA 855 (1513)
Q Consensus 777 I~lLDDp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~~~G~~~eLl~~-~~~f~~l~~~ 855 (1513)
|+|||||||+||+.+++++++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+|+||+++ ++.|.+++..
T Consensus 160 ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMR-NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHH-HHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 355647765559899999999-9999858998999978899998499999998999999889999982998789999998
Q ss_pred H
Q ss_conf 5
Q 000432 856 H 856 (1513)
Q Consensus 856 ~ 856 (1513)
+
T Consensus 239 Q 239 (241)
T d2pmka1 239 Q 239 (241)
T ss_dssp H
T ss_pred H
T ss_conf 1
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=438.38 Aligned_cols=227 Identities=30% Similarity=0.453 Sum_probs=212.5
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------
Q ss_conf 852399996799808999999401304897178399999258974999999981695687738999794-----------
Q 000432 628 SEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT----------- 696 (1513)
Q Consensus 628 ~~~~I~~~~~sf~w~~~~~~~~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~----------- 696 (1513)
..+.|+++|++|+|+.. ..++|+|+||+|++|+++||||++|||||||+++|+|.++|.+|+|.++|.
T Consensus 10 ~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r 88 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 88 (253)
T ss_dssp CCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred CCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHH
T ss_conf 83079999889992999-97635332899859999999999998599999998621688846898788012111066542
Q ss_pred --EEEECCCCCCCCCCHHHHHCCCC--CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf --89992787666764789870499--99914799999998207788432289973013799877747999999999870
Q 000432 697 --KAYVPQSPWILTGNIRENILFGN--QYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVY 772 (1513)
Q Consensus 697 --~ayv~Q~~wi~~gTIreNIlfG~--~~d~~~y~~vi~ac~L~~dl~~lp~Gd~T~IGE~G~nLSGGQkQRIaLARAly 772 (1513)
++||+|+|++|++|+++|+.+|. ..++++++++++.|.+.++++.+|+|++|.+|++|.+|||||||||+||||++
T Consensus 89 ~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~ 168 (253)
T d3b60a1 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 168 (253)
T ss_dssp HTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred HEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 06879950254478620243320572208999999999998179999735544101434888984999999999999995
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHHH
Q ss_conf 29978986076778897779999999983420993799980598961238889999398697815968898418307999
Q 000432 773 QDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVL 852 (1513)
Q Consensus 773 ~~adI~lLDDp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~~~G~~~eLl~~~~~f~~l 852 (1513)
++|+|+|||||||+||+.++..++ +.+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+|+||+++++.|.++
T Consensus 169 ~~p~ililDEpts~LD~~~~~~i~-~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l 247 (253)
T d3b60a1 169 RDSPILILDEATSALDTESERAIQ-AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 247 (253)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHH-HHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
T ss_conf 499889951644458988999999-9998752278899998879999859999999899999988999998689399999
Q ss_pred HHHH
Q ss_conf 9865
Q 000432 853 VGAH 856 (1513)
Q Consensus 853 ~~~~ 856 (1513)
++.+
T Consensus 248 ~~~Q 251 (253)
T d3b60a1 248 HKMQ 251 (253)
T ss_dssp HHHT
T ss_pred HHHC
T ss_conf 9972
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=432.32 Aligned_cols=226 Identities=27% Similarity=0.390 Sum_probs=207.1
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------
Q ss_conf 852399996799808999999401304897178399999258974999999981695687738999794-----------
Q 000432 628 SEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT----------- 696 (1513)
Q Consensus 628 ~~~~I~~~~~sf~w~~~~~~~~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~----------- 696 (1513)
..+.|+++|++|+|+...+.++|+|+||+|++|+++||+|++|||||||+++|+|.++|.+|+|.++|.
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred CCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHH
T ss_conf 53369999989988999999767443899849989999999998499999998614378768998899853110137888
Q ss_pred --EEEECCCCCCCCCCHHHHHCCCCCC--CCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf --8999278766676478987049999--914799999998207788432289973013799877747999999999870
Q 000432 697 --KAYVPQSPWILTGNIRENILFGNQY--DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVY 772 (1513)
Q Consensus 697 --~ayv~Q~~wi~~gTIreNIlfG~~~--d~~~y~~vi~ac~L~~dl~~lp~Gd~T~IGE~G~nLSGGQkQRIaLARAly 772 (1513)
++||+|+|++|++||+|||.||.+. +.++..+..+.+.+...++.+|+|++|.++++|.+|||||||||+||||++
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~ 167 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCC
T ss_conf 77654045650027634655454210130278899999999899999856121113675167668954704899860445
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHH
Q ss_conf 299789860767788977799999999834209--937999805989612388899993986978159688984183079
Q 000432 773 QDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFE 850 (1513)
Q Consensus 773 ~~adI~lLDDp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l~~aD~Iivl~~G~I~~~G~~~eLl~~~~~f~ 850 (1513)
++|+|+|||||||+||++++.++++ .+..+.+ ++|+|+|||+++.+..||+|++|++|+|+++|+|+||+++++.|.
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~-~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~ 246 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQ-LLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYW 246 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHH-HHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHH
T ss_conf 6870787167576568536899999-999976506989999959799998599999998999999889999985975889
Q ss_pred HHHH
Q ss_conf 9998
Q 000432 851 VLVG 854 (1513)
Q Consensus 851 ~l~~ 854 (1513)
++++
T Consensus 247 ~l~~ 250 (251)
T d1jj7a_ 247 AMVQ 250 (251)
T ss_dssp HHHC
T ss_pred HHHC
T ss_conf 9962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=430.76 Aligned_cols=221 Identities=28% Similarity=0.474 Sum_probs=206.8
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE-------------EE
Q ss_conf 99996799808999999401304897178399999258974999999981695687738999794-------------89
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------KA 698 (1513)
Q Consensus 632 I~~~~~sf~w~~~~~~~~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~-------------~a 698 (1513)
|+++|++|+|++ .+++|+|+||++++|+++||+|++|||||||+++|+|.++|.+|+|.++|. ++
T Consensus 2 le~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCC--CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 799988998799--984142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EECCCCCCCCCCHHHHHCCCCC--CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9927876667647898704999--99147999999982077884322899730137998777479999999998702997
Q 000432 699 YVPQSPWILTGNIRENILFGNQ--YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDAD 776 (1513)
Q Consensus 699 yv~Q~~wi~~gTIreNIlfG~~--~d~~~y~~vi~ac~L~~dl~~lp~Gd~T~IGE~G~nLSGGQkQRIaLARAly~~ad 776 (1513)
||+|+|++|++||+|||.++.. .++++.+++++.+.+..+++.+|+|++|.|||+|.+|||||||||+||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHH
Q ss_conf 8986076778897779999999983420993799980598961238889999398697815968898418307999986
Q 000432 777 IYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLVGA 855 (1513)
Q Consensus 777 I~lLDDp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~~~G~~~eLl~~~~~f~~l~~~ 855 (1513)
|+|||||||+||++++..++ +.+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+|+||+++++.|.++++.
T Consensus 160 ililDEpts~LD~~~~~~i~-~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~ 237 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQ-KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHH-HHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHC
T ss_pred EEEECCCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHH
T ss_conf 99965886556988999998-8788871799899997879999849999999899999999999998689699999999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=420.79 Aligned_cols=219 Identities=41% Similarity=0.706 Sum_probs=203.9
Q ss_pred CEEEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCC
Q ss_conf 23999967998089999994013048971783999992589749999999816956877389997948999278766676
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTG 709 (1513)
Q Consensus 630 ~~I~~~~~sf~w~~~~~~~~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~~ayv~Q~~wi~~g 709 (1513)
..|.+++.+| + .+|+|+|+||+|++|+++||+|++|||||||+++|+|+++|++|+|.++|.++||+|+||+|++
T Consensus 37 ~~i~~~~~~~--~---g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~ 111 (281)
T d1r0wa_ 37 NNVSFSHLCL--V---GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPG 111 (281)
T ss_dssp ---CHHHHHH--T---TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSE
T ss_pred CCEEEEECCC--C---CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCC
T ss_conf 9679997698--9---9767737599985999999998999829999999957974788289999999998164302676
Q ss_pred CHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
Q ss_conf 47898704999991479999999820778843228997301379987774799999999987029978986076778897
Q 000432 710 NIRENILFGNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDA 789 (1513)
Q Consensus 710 TIreNIlfG~~~d~~~y~~vi~ac~L~~dl~~lp~Gd~T~IGE~G~nLSGGQkQRIaLARAly~~adI~lLDDp~SAlD~ 789 (1513)
||+|||.||..+++.++++++++|.+..|+..+|+|++|.+|++|.+|||||||||+||||++++|+|+|||||||+||+
T Consensus 112 tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~ 191 (281)
T d1r0wa_ 112 TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 191 (281)
T ss_dssp EHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCH
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCH
T ss_conf 03214203334560579999999776999984612332355554237799999999999999869635133385544898
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHH
Q ss_conf 7799999999834209937999805989612388899993986978159688984183079999
Q 000432 790 HTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRFEELLKQNIGFEVLV 853 (1513)
Q Consensus 790 ~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~~~G~~~eLl~~~~~f~~l~ 853 (1513)
.+.+.+++.++....+++|+|+|||+++.+..||+|++|++|+|++.|+|+||+..+.+|...+
T Consensus 192 ~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~ 255 (281)
T d1r0wa_ 192 FTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKL 255 (281)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCHHHHHH
T ss_conf 9999999999988628999999925289998599999998999999878999960594899987
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=404.80 Aligned_cols=218 Identities=24% Similarity=0.362 Sum_probs=199.9
Q ss_pred CEEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCE
Q ss_conf 40799878999769989520011589628929999869999898999999505789974899938527999957762000
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339 (1513)
Q Consensus 1260 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i 1339 (1513)
+.|.|+|+++. + .|||+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+|| ++
T Consensus 37 ~~i~~~~~~~~---g-~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i 99 (281)
T d1r0wa_ 37 NNVSFSHLCLV---G-NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RV 99 (281)
T ss_dssp ---CHHHHHHT---T-CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CE
T ss_pred CCEEEEECCCC---C-CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------EE
T ss_conf 96799976989---9-7677375999859999999989998299999999579747882899999-------------99
Q ss_pred EEECCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 88747775466767550487999999999999998499389985110221010049998890599999999997059988
Q 000432 1340 GIIPQDPTLFDGTVRGNLDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSI 1419 (1513)
Q Consensus 1340 ~iIpQdp~LF~GTIR~NLdp~~~~sdeei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~~I 1419 (1513)
+++||+|.+|+||||+|+.+...+++.+++++++.+++.+++..+|+++++.++++|.+||||||||+||||||+++|+|
T Consensus 100 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~i 179 (281)
T d1r0wa_ 100 SFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADL 179 (281)
T ss_dssp EEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99816430267603214203334560579999999776999984612332355554237799999999999999869635
Q ss_pred EEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHH
Q ss_conf 998567779999879999999-9985599389986159135752197999949889673492589712883999999
Q 000432 1420 LVLDEATASVDSATDGVIQKI-ISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLI 1495 (1513)
Q Consensus 1420 LiLDEaTsslD~~Td~~Iq~~-ir~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~l~ 1495 (1513)
|+||||||++|+.|+..|.+. +....+++|+|+|+||++.+..||||++|++|+|+++|+|++|++.. +.|.+..
T Consensus 180 llLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~-~~~~~~~ 255 (281)
T d1r0wa_ 180 YLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLR-PDFSSKL 255 (281)
T ss_dssp EEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHC-HHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCC-CHHHHHH
T ss_conf 133385544898999999999998862899999992528999859999999899999987899996059-4899987
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.2e-43 Score=355.56 Aligned_cols=216 Identities=22% Similarity=0.365 Sum_probs=190.8
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEE
Q ss_conf 07998789997699895200115896289299998699998989999995057899748999385279999577620008
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i~ 1340 (1513)
.|+++|++.+|.+ ..+|+||||+|++||.+||+|++|||||||++++.|++.|++|+|.+||.|+++.+.+ |++++
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEEE
T ss_conf 4999879999999--9998130678879989999999998299999999758999878799916413547700--01589
Q ss_pred EECCCCCCCCC-CHHHCCCCCC---CCCH----HHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 87477754667-6755048799---9999----99999999849938998511022101004999889059999999999
Q 000432 1341 IIPQDPTLFDG-TVRGNLDPLV---QYSD----KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRT 1412 (1513)
Q Consensus 1341 iIpQdp~LF~G-TIR~NLdp~~---~~sd----eei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARA 1412 (1513)
++||+|-+|+. |+++|+.... ..+. +.+.++|+.+++.++. |.. -..||||||||++||||
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LSGGq~QRvaiAra 150 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL-------NRY----PAQLSGGQRQRVAVARA 150 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGT-------TSC----TTTCCSSCHHHHHHHHH
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-------CCC----HHHCCHHHHHHHHHHHH
T ss_conf 9800335342220999999999873999999999999999875985566-------099----54699999889999766
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCH
Q ss_conf 705998899856777999987999999999855--99389986159135752-197999949889673492589712883
Q 000432 1413 LLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDS 1489 (1513)
Q Consensus 1413 LLr~~~ILiLDEaTsslD~~Td~~Iq~~ir~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~~s 1489 (1513)
|..+|+||+||||||++|+.+...|.+.|++.. .++|+|+|+|.+..+.. ||||++|++|+|++.|+|+++.+++..
T Consensus 151 L~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 230 (239)
T d1v43a3 151 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 230 (239)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCC
T ss_conf 40499824306886668989998999999999873198079994899999986999999989999998599999868999
Q ss_pred HH
Q ss_conf 99
Q 000432 1490 FF 1491 (1513)
Q Consensus 1490 ~f 1491 (1513)
.|
T Consensus 231 ~~ 232 (239)
T d1v43a3 231 VF 232 (239)
T ss_dssp HH
T ss_pred HH
T ss_conf 89
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.8e-44 Score=356.34 Aligned_cols=215 Identities=27% Similarity=0.377 Sum_probs=191.8
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEE
Q ss_conf 79987899976998952001158962892999986999989899999950578997489993852799995776200088
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i~i 1341 (1513)
|+++||+++|.+ ..+|+|+||+|++||.+||+|+||||||||++++.|++.|++|+|.+||.|+++.+. .|+++++
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGM 76 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEE
T ss_pred CEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEEE
T ss_conf 999999999899--999811177886998999998999829999999965878888889999997788864--4432223
Q ss_pred ECCCCCCCCC-CHHHCCCCCCC---C----CHHHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 7477754667-67550487999---9----99999999998499389985110221010049998890599999999997
Q 000432 1342 IPQDPTLFDG-TVRGNLDPLVQ---Y----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL 1413 (1513)
Q Consensus 1342 IpQdp~LF~G-TIR~NLdp~~~---~----sdeei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARAL 1413 (1513)
|||+|.+|+. |+++|+..... . .++++.++++.+++.++....| ..||||||||++|||||
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAraL 145 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHH
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHHH
T ss_conf 4334202643337889789998759988999999999997578865664896-----------56999999999999997
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCHH
Q ss_conf 05998899856777999987999999999855--99389986159135752-1979999498896734925897128839
Q 000432 1414 LKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDSF 1490 (1513)
Q Consensus 1414 Lr~~~ILiLDEaTsslD~~Td~~Iq~~ir~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~~s~ 1490 (1513)
+.+|++|+|||||+++|+.+...|++.|++.. .++|+|+|+|++..+.. ||||++|++|+|++.|+|.++++++...
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~ 225 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 225 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCH
T ss_conf 03998899758887889889989999999998742987999948999999969999999799999980899997389997
Q ss_pred H
Q ss_conf 9
Q 000432 1491 F 1491 (1513)
Q Consensus 1491 f 1491 (1513)
|
T Consensus 226 ~ 226 (232)
T d2awna2 226 F 226 (232)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.5e-44 Score=360.99 Aligned_cols=220 Identities=22% Similarity=0.344 Sum_probs=193.9
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHHH
Q ss_conf 07998789997699895200115896289299998699998989999995057899748999385279999---577620
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIG---LHDLRS 1337 (1513)
Q Consensus 1261 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~---l~~LR~ 1337 (1513)
.|+++|++.+|+.+...+|+||||+|++||.+||+|+||||||||+++|.|++.|++|+|.+||.|++..+ ....|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CEEEECCCCCCCCC-CHHHCCCC-CC--CCC----HHHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHH
Q ss_conf 00887477754667-67550487-99--999----999999999849938998511022101004999889059999999
Q 000432 1338 RLGIIPQDPTLFDG-TVRGNLDP-LV--QYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCL 1409 (1513)
Q Consensus 1338 ~i~iIpQdp~LF~G-TIR~NLdp-~~--~~s----deei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~L 1409 (1513)
++++|||+|.||+. |+++|+.. .. ..+ ++.+.++++.+++.++....| ..||||||||++|
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----------~~LSGGqkQRvai 151 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRVAL 151 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCH-----------HHCCHHHHHHHHH
T ss_conf 51477304334666657777665567613799999999999986659176664895-----------4599999858998
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 999705998899856777999987999999999855--99389986159135752-197999949889673492589712
Q 000432 1410 GRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLER 1486 (1513)
Q Consensus 1410 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~ir~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~ 1486 (1513)
||||..+|+||++|||||++|+.+...+++.|++.. .+.|+|+|+|+++.+.. ||||++|++|+|+|.|+|+++.++
T Consensus 152 ARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~ 231 (242)
T d1oxxk2 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (242)
T ss_dssp HHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 75776046614544786679989988998999999863598799997999999996999999989999998699999868
Q ss_pred CCHHH
Q ss_conf 88399
Q 000432 1487 EDSFF 1491 (1513)
Q Consensus 1487 ~~s~f 1491 (1513)
+...|
T Consensus 232 P~~~~ 236 (242)
T d1oxxk2 232 PVSIQ 236 (242)
T ss_dssp CSSHH
T ss_pred CCCHH
T ss_conf 99979
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=5.7e-44 Score=358.18 Aligned_cols=214 Identities=24% Similarity=0.368 Sum_probs=191.8
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEE
Q ss_conf 79987899976998952001158962892999986999989899999950578997489993852799995776200088
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i~i 1341 (1513)
|+++|++.+|.. .+|+||||+|++||.+||+|+||||||||+++|.|+..|++|+|.+||.|+++++.. |+++++
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCEE
T ss_conf 899989999499---788433789879989999989998299999999647688878899956734652165--740561
Q ss_pred ECCCCCCCCC-CHHHCCCC----CCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 7477754667-67550487----999999999999998499389985110221010049998890599999999997059
Q 000432 1342 IPQDPTLFDG-TVRGNLDP----LVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKK 1416 (1513)
Q Consensus 1342 IpQdp~LF~G-TIR~NLdp----~~~~sdeei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~ 1416 (1513)
|||+|.||+. |+++|+.. .+.-.++++.++++.+++.++. |..+ ..||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL-------DRNP----LTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTT-------TSCG----GGSCHHHHHHHHHHHHTTSC
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH-------HCCH----HHCCHHHHCCHHHHHHHHCC
T ss_conf 512111174665778888877640553899999999982565557-------5895----54799984014030434436
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCHHH
Q ss_conf 98899856777999987999999999855--99389986159135752-19799994988967349258971288399
Q 000432 1417 SSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDSFF 1491 (1513)
Q Consensus 1417 ~~ILiLDEaTsslD~~Td~~Iq~~ir~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f 1491 (1513)
|+||+|||||+++|+.+...|++.|++.. .+.|+|+|+|++..+.. ||||++|++|++++.|+|+++++++...+
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 771443478767998999999999999986479689997499999999699999997999999869999986899879
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-43 Score=355.81 Aligned_cols=218 Identities=31% Similarity=0.455 Sum_probs=191.8
Q ss_pred EEEEEEEEEECCCCC--CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 799878999769989--5200115896289299998699998989999995057899748999385279999577---62
Q 000432 1262 ISFHNLQIRYAEHLP--SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHD---LR 1336 (1513)
Q Consensus 1262 I~~~nvs~~Y~~~~~--~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~---LR 1336 (1513)
|+++|++.+|+.+.. .||+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+...+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred HCEEEECCCCCCCCC-CHHHCCCC---CCCC----CHHHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHH
Q ss_conf 000887477754667-67550487---9999----999999999984993899851102210100499988905999999
Q 000432 1337 SRLGIIPQDPTLFDG-TVRGNLDP---LVQY----SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFC 1408 (1513)
Q Consensus 1337 ~~i~iIpQdp~LF~G-TIR~NLdp---~~~~----sdeei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~ 1408 (1513)
+++++|||+|-+|+. |+++|+.. .... .++++.++|++++|.+. +|... ..||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~-------~~~~~----~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK-------HDSYP----SNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTT-------TSSCB----SCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHH-------HHCCH----HHCCHHHHHHHH
T ss_conf 1664302252227996499999999998499989999999999997699035-------54894----349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9999705998899856777999987999999999855--99389986159135752-19799994988967349258971
Q 000432 1409 LGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1409 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~ir~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~ 1485 (1513)
|||||..+|++|++||||+++|+.+...|++.|++.. .+.|+|+|+|++..+.. ||||++|++|+|+|.|+|+++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred CCCHH
Q ss_conf 28839
Q 000432 1486 REDSF 1490 (1513)
Q Consensus 1486 ~~~s~ 1490 (1513)
++..-
T Consensus 231 ~P~~~ 235 (240)
T d3dhwc1 231 HPKTP 235 (240)
T ss_dssp SSCCT
T ss_pred CCCCH
T ss_conf 89985
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=9.9e-44 Score=356.32 Aligned_cols=218 Identities=20% Similarity=0.314 Sum_probs=191.2
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf 07998789997699895200115896289299998699998989999995057899748999385279999577----62
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHD----LR 1336 (1513)
Q Consensus 1261 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~----LR 1336 (1513)
.|+++||+.+|.+ ..+|+|+||++++||.+||+|+||||||||++++.|++.|++|+|.+||.|+....... .|
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 1899869999899--99985606688699899999999980999999996487889898999999803566444245322
Q ss_pred HCEEEECCCCCCCCC-CHHHCCCCC---CCCC----HHHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHH
Q ss_conf 000887477754667-675504879---9999----99999999984993899851102210100499988905999999
Q 000432 1337 SRLGIIPQDPTLFDG-TVRGNLDPL---VQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFC 1408 (1513)
Q Consensus 1337 ~~i~iIpQdp~LF~G-TIR~NLdp~---~~~s----deei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~ 1408 (1513)
+++++|||+|.||+. |+++|+... ...+ ++++.++++.+++.++.. ... ..||||||||++
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~-------~~p----~~LSGGqkQRv~ 149 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-------RKP----RELSGGQRQRVA 149 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-------CCG----GGSCHHHHHHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHC-------CCH----HHCCHHHHHHHH
T ss_conf 551200221222310116676330687729998999999999998759966762-------993----349999999999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9999705998899856777999987999999999855--99389986159135752-19799994988967349258971
Q 000432 1409 LGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLE 1485 (1513)
Q Consensus 1409 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~ir~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~ 1485 (1513)
|||||..+|+||+|||||+++|+.+...|.+.|++.. .+.|+|+|+|+++.+.. ||||++|++|+|+|.|+|+++++
T Consensus 150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998269988982588765698999899999999986369889999599999999699999998999999859999982
Q ss_pred CCCHHH
Q ss_conf 288399
Q 000432 1486 REDSFF 1491 (1513)
Q Consensus 1486 ~~~s~f 1491 (1513)
++...|
T Consensus 230 ~P~~~~ 235 (240)
T d1g2912 230 KPANTF 235 (240)
T ss_dssp SCSBHH
T ss_pred CCCCHH
T ss_conf 899989
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=7.8e-43 Score=349.25 Aligned_cols=224 Identities=27% Similarity=0.414 Sum_probs=193.1
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--------
Q ss_conf 079987899976998952001158962892999986999989899999950578997489993852799995--------
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGL-------- 1332 (1513)
Q Consensus 1261 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l-------- 1332 (1513)
.|+++|++++|... .||+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+.
T Consensus 2 ~Lev~nl~k~yg~~--~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECCE--EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 69999789998999--9881506688699799999899982999999997476678997799999933677520000235
Q ss_pred -----HHHHHCEEEECCCCCCCCC-CHHHCCCC----CCCCC----HHHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCC
Q ss_conf -----7762000887477754667-67550487----99999----9999999998499389985110221010049998
Q 000432 1333 -----HDLRSRLGIIPQDPTLFDG-TVRGNLDP----LVQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGEN 1398 (1513)
Q Consensus 1333 -----~~LR~~i~iIpQdp~LF~G-TIR~NLdp----~~~~s----deei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~n 1398 (1513)
...|+++++|||+|-+|+. |+++|+.. ....+ ++.+.++++.+++.+.... ... ..
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~------~~p----~~ 149 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG------KYP----VH 149 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT------SCG----GG
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHC------CCC----CC
T ss_conf 17679997454489983323141101021365657876299989999999999998299524430------682----20
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-CCEEEEEECCEEEE
Q ss_conf 89059999999999705998899856777999987999999999855-99389986159135752-19799994988967
Q 000432 1399 WSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAE 1476 (1513)
Q Consensus 1399 LS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~ir~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE 1476 (1513)
|||||+||+||||||..+|++|++||||+++|+.+...|.+.|++.. +++|+|+|+|++..+.. ||||+||++|+|+|
T Consensus 150 LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~ 229 (258)
T d1b0ua_ 150 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 229 (258)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEE
T ss_conf 56778889899999843998788524555688788889987655410368833899489999998699999997999999
Q ss_pred ECCHHHHHHCCCHHH-HHHHH
Q ss_conf 349258971288399-99999
Q 000432 1477 YDSPTKLLEREDSFF-SQLIK 1496 (1513)
Q Consensus 1477 ~gsp~~Ll~~~~s~f-~~l~~ 1496 (1513)
.|+|+++++++...| .+++.
T Consensus 230 ~g~~~ev~~~P~~~~~~~ll~ 250 (258)
T d1b0ua_ 230 EGDPEQVFGNPQSPRLQQFLK 250 (258)
T ss_dssp EECHHHHHHSCCSHHHHHHHH
T ss_pred ECCHHHHHHCCCCHHHHHHHH
T ss_conf 849999983899999999881
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=9.5e-43 Score=348.60 Aligned_cols=209 Identities=25% Similarity=0.379 Sum_probs=180.8
Q ss_pred EEEEEEEEEECCCCC--CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 799878999769989--52001158962892999986999989899999950578997489993852799995776----
Q 000432 1262 ISFHNLQIRYAEHLP--SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDL---- 1335 (1513)
Q Consensus 1262 I~~~nvs~~Y~~~~~--~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~L---- 1335 (1513)
|+++||+++|+.+.. .+|+|+||+|++||.+||+|+||||||||++++.|+..|++|+|.+||.|+..++.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HHCEEEECCCCCCCCC-CHHHCCCC------CCCCCHH----HHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHH
Q ss_conf 2000887477754667-67550487------9999999----99999998499389985110221010049998890599
Q 000432 1336 RSRLGIIPQDPTLFDG-TVRGNLDP------LVQYSDK----QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQR 1404 (1513)
Q Consensus 1336 R~~i~iIpQdp~LF~G-TIR~NLdp------~~~~sde----ei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQr 1404 (1513)
|+++++|||+|.+|+. |+++|+.. ....+.+ ++.+.|+.++|.+.. .+... .+||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~------~~~~p----~~LSGGqk 151 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF------ANHKP----NQLSGGQQ 151 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGG------TTCCG----GGSCHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHH------HCCCH----HHCCHHHH
T ss_conf 555778804124176866888775788872247899999999999988762423455------34880----23899999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 99999999705998899856777999987999999999855--99389986159135752197999949889673492
Q 000432 1405 QLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSP 1480 (1513)
Q Consensus 1405 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~ir~~f--~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp 1480 (1513)
||++|||||..+|+||+||||||++|+.+...|++.|++.. .++|+|+|+|+++.+..||||++|++|+|+|.|++
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 999987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.1e-41 Score=335.72 Aligned_cols=214 Identities=22% Similarity=0.396 Sum_probs=186.7
Q ss_pred CEEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCE
Q ss_conf 40799878999769989520011589628929999869999898999999505789974899938527999957762000
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRL 1339 (1513)
Q Consensus 1260 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i 1339 (1513)
|.|+++|++.+|... .||+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.++|.|+.+ ..+.+|+++
T Consensus 1 gaI~v~nl~k~yg~~--~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CCEEEEEEEEEECCE--EEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHHHHE
T ss_conf 978999589999999--99806256884897999999999999999999966988788879998672446-839887218
Q ss_pred EEECCCCCCCCC-CHHHCCCCC---CCCCHHHHHH----HHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 887477754667-675504879---9999999999----99984993899851102210100499988905999999999
Q 000432 1340 GIIPQDPTLFDG-TVRGNLDPL---VQYSDKQVWE----ALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGR 1411 (1513)
Q Consensus 1340 ~iIpQdp~LF~G-TIR~NLdp~---~~~sdeei~~----aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LAR 1411 (1513)
+++||++.+|.. |+++|+... ...+++++++ +++.+++.+. .+..+ .+||+|||||++|||
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK-------IKDRV----STYSKGMVRKLLIAR 146 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGG-------GGSBG----GGCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-------HHHHH----HHCCHHHHHHHHHHH
T ss_conf 6750015468786677888989986179989999999999986797888-------85045----337998989999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 9705998899856777999987999999999855-99389986159135752-1979999498896734925897128
Q 000432 1412 TLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE 1487 (1513)
Q Consensus 1412 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~ir~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~ 1487 (1513)
||+.+|+|++|||||+++|+.+...|.+.|++.. .+.|||+++|.++.+.. ||||++|++|++++.|+|+++.++.
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 224 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 986599988733798897989999999999999965998999959899999969999999899999992899998652
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.3e-41 Score=336.53 Aligned_cols=213 Identities=25% Similarity=0.318 Sum_probs=183.8
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHC-E
Q ss_conf 079987899976998952001158962892999986999989899999950578997489993852799995776200-0
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSR-L 1339 (1513)
Q Consensus 1261 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~-i 1339 (1513)
-++++|++.+|.+. .||+||||++++||.+||+|++|||||||+++|.|++.|++|+|.+||.|+...+.++.+++ +
T Consensus 4 iL~v~nlsk~yg~~--~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETTE--EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECCE--EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 69997789997996--8871217998899799999999984999999997797688737999999664056999998338
Q ss_pred EEECCCCCCCCC-CHHHCCCCCC----------------CCCH----HHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCC
Q ss_conf 887477754667-6755048799----------------9999----999999998499389985110221010049998
Q 000432 1340 GIIPQDPTLFDG-TVRGNLDPLV----------------QYSD----KQVWEALDKCQLGDLVRAKEEKLDSTVAENGEN 1398 (1513)
Q Consensus 1340 ~iIpQdp~LF~G-TIR~NLdp~~----------------~~sd----eei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~n 1398 (1513)
+++||+|.+|.. |+++|+.... ...+ ++..++++..++.+. .|..+ .+
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~ 150 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-------YDRKA----GE 150 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-------TTSBG----GG
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHH-------CCCCH----HH
T ss_conf 72577642478874232143013330345045665421353289999999999876196302-------05953----56
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-CCEEEEEECCEEEE
Q ss_conf 89059999999999705998899856777999987999999999855-99389986159135752-19799994988967
Q 000432 1399 WSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAE 1476 (1513)
Q Consensus 1399 LS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~ir~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE 1476 (1513)
||||||||++|||||..+|++|+|||||+++|+.+...|.+.|++.. +++|+++|+|+++.+.. ||||+||++|+|++
T Consensus 151 LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~ 230 (254)
T d1g6ha_ 151 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 230 (254)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEE
T ss_conf 99188889999999975927232439765699999999999999999789989999476999998699999996998999
Q ss_pred ECCHHHHHHC
Q ss_conf 3492589712
Q 000432 1477 YDSPTKLLER 1486 (1513)
Q Consensus 1477 ~gsp~~Ll~~ 1486 (1513)
.|+|+|+.++
T Consensus 231 ~g~~~e~~~~ 240 (254)
T d1g6ha_ 231 EGRGEEEIKN 240 (254)
T ss_dssp EEESHHHHHH
T ss_pred EECHHHHHHC
T ss_conf 9668998654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=4.3e-41 Score=335.58 Aligned_cols=220 Identities=22% Similarity=0.376 Sum_probs=184.0
Q ss_pred CEEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH-C
Q ss_conf 407998789997699895200115896289299998699998989999995057899748999385279999577620-0
Q 000432 1260 GTISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRS-R 1338 (1513)
Q Consensus 1260 g~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~-~ 1338 (1513)
--|+++|++++|.+ ..+|+||||+|++||.+||+|++|||||||+++++|+++|++|+|.+||.|+...+.+..++ .
T Consensus 5 ~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 07999618999899--8888302578889979999999998599999999678888803898424434466088888742
Q ss_pred EEEECCCCCCCCC-CHHHCCCCC--CCCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 0887477754667-675504879--9999999999999849938998511022101004999889059999999999705
Q 000432 1339 LGIIPQDPTLFDG-TVRGNLDPL--VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLK 1415 (1513)
Q Consensus 1339 i~iIpQdp~LF~G-TIR~NLdp~--~~~sdeei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr 1415 (1513)
++++||++.+|+. |+++|+... .....+++.+.++.+- +.. .+++........+||||||||++|||||..
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~--~~~----~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF--SLF----PRLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHH--HHC----HHHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH--HHH----HCHHHHHHCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 35567655457763699999988873278889999999999--874----176888758543389999999999999982
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 998899856777999987999999999855-99389986159135752-1979999498896734925897128
Q 000432 1416 KSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE 1487 (1513)
Q Consensus 1416 ~~~ILiLDEaTsslD~~Td~~Iq~~ir~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~ 1487 (1513)
+|++|+|||||+++|+.+...|.+.|++.. +++|+|+|+|++..+.. ||||+||++|++++.|+|+++++++
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 99874003988679999999999999999968998999958899999969999999899999984899984298
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=3.9e-40 Score=328.06 Aligned_cols=215 Identities=28% Similarity=0.433 Sum_probs=182.3
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEE
Q ss_conf 79987899976998952001158962892999986999989899999950578997489993852799995776200088
Q 000432 1262 ISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGI 1341 (1513)
Q Consensus 1262 I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i~i 1341 (1513)
+++ ++.-+|.+- .+ |+||+++ +|.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+++.. |+++++
T Consensus 3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECCE---EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEE
T ss_conf 999-999998999---99-9999749-979999979998099999999739998962899999998869989--928522
Q ss_pred ECCCCCCCCC-CHHHCCCC-CCCCC----HHHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 7477754667-67550487-99999----999999999849938998511022101004999889059999999999705
Q 000432 1342 IPQDPTLFDG-TVRGNLDP-LVQYS----DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLK 1415 (1513)
Q Consensus 1342 IpQdp~LF~G-TIR~NLdp-~~~~s----deei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr 1415 (1513)
+||+|.+|+. |+++|+.. ....+ ++.+.++++.+++.++....| ..||||||||++||||+..
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----------~~LSGG~kQRvaiAral~~ 143 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-----------ARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCG-----------GGSCHHHHHHHHHHHHHTT
T ss_pred ECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHHHHC
T ss_conf 52314435220155766653233677889999999998638375665794-----------4489999899999877751
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCHHHH
Q ss_conf 998899856777999987999999999855--99389986159135752-197999949889673492589712883999
Q 000432 1416 KSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLEREDSFFS 1492 (1513)
Q Consensus 1416 ~~~ILiLDEaTsslD~~Td~~Iq~~ir~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~ 1492 (1513)
+|+||+||||||++|+.+...+++.|++.- .+.|+|+|+|.+..+.. ||||++|++|+++++|+|++++++++....
T Consensus 144 ~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~ 223 (240)
T d2onka1 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVA 223 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHH
T ss_conf 67706752865558879999999999999874397699981899999996999999989999999069998329988999
Q ss_pred HHH
Q ss_conf 999
Q 000432 1493 QLI 1495 (1513)
Q Consensus 1493 ~l~ 1495 (1513)
+++
T Consensus 224 ~fl 226 (240)
T d2onka1 224 EFL 226 (240)
T ss_dssp HHG
T ss_pred HHH
T ss_conf 985
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.2e-39 Score=318.59 Aligned_cols=199 Identities=29% Similarity=0.439 Sum_probs=168.2
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------EEEE
Q ss_conf 99996799808999999401304897178399999258974999999981695687738999794-----------8999
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-----------KAYV 700 (1513)
Q Consensus 632 I~~~~~sf~w~~~~~~~~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~-----------~ayv 700 (1513)
|+++|++++|+. ..+|+|+||++++|+.++|+||+|||||||+++|.|.++|++|+|.++|. ++||
T Consensus 1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v 77 (232)
T d2awna2 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 77 (232)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEE
T ss_pred CEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEE
T ss_conf 999999999899---99981117788699899999899982999999996587888888999999778886444322234
Q ss_pred CCCCCCCCC-CHHHHHCCCCCCC---C-H---HHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 278766676-4789870499999---1-4---799999998207788432289973013799877747999999999870
Q 000432 701 PQSPWILTG-NIRENILFGNQYD---S-C---KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVY 772 (1513)
Q Consensus 701 ~Q~~wi~~g-TIreNIlfG~~~d---~-~---~y~~vi~ac~L~~dl~~lp~Gd~T~IGE~G~nLSGGQkQRIaLARAly 772 (1513)
+|+|-++.. |++|||.|+.... + + +..++++...+.+..+ .....||||||||++||||+.
T Consensus 78 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~-----------~~~~~LSGGqkQRvaiAraL~ 146 (232)
T d2awna2 78 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRTLV 146 (232)
T ss_dssp CSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHH-----------CCHHHCCHHHHHHHHHHHHHH
T ss_conf 334202643337889789998759988999999999997578865664-----------896569999999999999970
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 29978986076778897779999999983420--99379998059896123-888999939869781596889841
Q 000432 773 QDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 773 ~~adI~lLDDp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~~~G~~~eLl~~ 845 (1513)
.+|++++||||||+||+.+...+.+ .+..+. .++|+|+|||+++.... ||+|++|++|+|++.|+.+|++++
T Consensus 147 ~~P~illlDEPts~LD~~~~~~i~~-~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 147 AEPSVFLLDEPLSNLDAALRVQMRI-EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 3998899758887889889989999-99999874298799994899999996999999979999998089999738
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=8.5e-39 Score=317.52 Aligned_cols=203 Identities=23% Similarity=0.332 Sum_probs=171.1
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 399996799808999999401304897178399999258974999999981695687738999794--------------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------- 696 (1513)
Q Consensus 631 ~I~~~~~sf~w~~~~~~~~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~-------------- 696 (1513)
.|+++|++++|+.. ...+|+|+||++++|+.++|+|++|||||||+++|.|..+|++|+|.++|.
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred --EEEECCCCCCCCC-CHHHHHCCCCCC---CC----HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf --8999278766676-478987049999---91----4799999998207788432289973013799877747999999
Q 000432 697 --KAYVPQSPWILTG-NIRENILFGNQY---DS----CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766 (1513)
Q Consensus 697 --~ayv~Q~~wi~~g-TIreNIlfG~~~---d~----~~y~~vi~ac~L~~dl~~lp~Gd~T~IGE~G~nLSGGQkQRIa 766 (1513)
++||+|++-++.. |++|||.|+... ++ ++.+++++.+.|.+..+. .-..||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-----------~p~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH-----------FPRELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHC-----------CHHHCCHHHHHHHH
T ss_conf 4514773043346666577776655676137999999999999866591766648-----------95459999985899
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCC-CCCCEEEEEECCEEEEECCHHHHH
Q ss_conf 99987029978986076778897779999999983420--993799980598961-238889999398697815968898
Q 000432 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFL-PAADIILVMENGRIAQAGRFEELL 843 (1513)
Q Consensus 767 LARAly~~adI~lLDDp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~~~G~~~eLl 843 (1513)
||||+..+|+++|+|||||+||+.+...+. +.+..+. .++|+|+|||+++.. ..||+|++|++|+|++.|+.+|+.
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~-~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSAR-ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHH-HHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHH-HHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 875776046614544786679989988998-9999998635987999979999999969999999899999986999998
Q ss_pred HCC
Q ss_conf 418
Q 000432 844 KQN 846 (1513)
Q Consensus 844 ~~~ 846 (1513)
++-
T Consensus 230 ~~P 232 (242)
T d1oxxk2 230 DNP 232 (242)
T ss_dssp HSC
T ss_pred HCC
T ss_conf 689
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.7e-38 Score=315.06 Aligned_cols=198 Identities=29% Similarity=0.446 Sum_probs=169.5
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------EEEE
Q ss_conf 99996799808999999401304897178399999258974999999981695687738999794-----------8999
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-----------KAYV 700 (1513)
Q Consensus 632 I~~~~~sf~w~~~~~~~~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~-----------~ayv 700 (1513)
|+++|++++|+. .+|+|+||++++|+.++|+||+|||||||+++|.|.++|.+|+|.++|. ++||
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v 77 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEEE
T ss_conf 899989999499----7884337898799899999899982999999996476888788999567346521657405615
Q ss_pred CCCCCCCC-CCHHHHHCCCCC----CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 27876667-647898704999----9914799999998207788432289973013799877747999999999870299
Q 000432 701 PQSPWILT-GNIRENILFGNQ----YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDA 775 (1513)
Q Consensus 701 ~Q~~wi~~-gTIreNIlfG~~----~d~~~y~~vi~ac~L~~dl~~lp~Gd~T~IGE~G~nLSGGQkQRIaLARAly~~a 775 (1513)
+|++-+|. -|++||+.|+.. -++++..++++...+.+.. ......||||||||++||||+..+|
T Consensus 78 ~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGG~~QRvaiAraL~~~P 146 (229)
T d3d31a2 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL-----------DRNPLTLSGGEQQRVALARALVTNP 146 (229)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTT-----------TSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH-----------HCCHHHCCHHHHCCHHHHHHHHCCC
T ss_conf 12111174665778888877640553899999999982565557-----------5895547999840140304344367
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 78986076778897779999999983420--99379998059896123-888999939869781596889841
Q 000432 776 DIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 776 dI~lLDDp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~~~G~~~eLl~~ 845 (1513)
+++|||||||+||+++...+. +.+..+. .++|+|+|||+++.... ||+|++|++|+|++.|+.+|++++
T Consensus 147 ~iLllDEPts~LD~~~~~~i~-~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 147 KILLLDEPLSALDPRTQENAR-EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp SEEEEESSSTTSCHHHHHHHH-HHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CCEEECCCCCCCCHHHHHHHH-HHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 714434787679989999999-999999864796899974999999996999999979999998699999868
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.7e-38 Score=315.08 Aligned_cols=201 Identities=25% Similarity=0.348 Sum_probs=169.7
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------EEE
Q ss_conf 399996799808999999401304897178399999258974999999981695687738999794-----------899
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-----------KAY 699 (1513)
Q Consensus 631 ~I~~~~~sf~w~~~~~~~~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~-----------~ay 699 (1513)
.|+++|++++|+. ..+|+|+||++++|+.++|+|++|||||||+++|.|.++|.+|+|.++|. ++|
T Consensus 6 ~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~ 82 (239)
T d1v43a3 6 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 82 (239)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEEEE
T ss_conf 4999879999999---9998130678879989999999998299999999758999878799916413547700015899
Q ss_pred ECCCCCCCC-CCHHHHHCCCCC---CCCHHH----HHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 927876667-647898704999---991479----999999820778843228997301379987774799999999987
Q 000432 700 VPQSPWILT-GNIRENILFGNQ---YDSCKY----DRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAV 771 (1513)
Q Consensus 700 v~Q~~wi~~-gTIreNIlfG~~---~d~~~y----~~vi~ac~L~~dl~~lp~Gd~T~IGE~G~nLSGGQkQRIaLARAl 771 (1513)
|+|++-+|. -|++||+.|+.. ++++.. +++++.+.|. .........||||||||++||||+
T Consensus 83 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGq~QRvaiAraL 151 (239)
T d1v43a3 83 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-----------ELLNRYPAQLSGGQRQRVAVARAI 151 (239)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-----------GGTTSCTTTCCSSCHHHHHHHHHH
T ss_pred EEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-----------HHHCCCHHHCCHHHHHHHHHHHHH
T ss_conf 800335342220999999999873999999999999999875985-----------566099546999998899997664
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 029978986076778897779999999983420--99379998059896123-8889999398697815968898418
Q 000432 772 YQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQN 846 (1513)
Q Consensus 772 y~~adI~lLDDp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~~~G~~~eLl~~~ 846 (1513)
..+|+|+|||||||+||+.+...+. +.+..+. .++|+|+|||+++.... ||+|++|++|+|++.|+.+|+.++-
T Consensus 152 ~~~P~iLllDEPts~LD~~~~~~i~-~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 152 VVEPDVLLMDEPLSNLDAKLRVAMR-AEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred CCCCCCEEECCCCCCCCHHHHHHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 0499824306886668989998999-9999998731980799948999999869999999899999985999998689
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.9e-38 Score=314.78 Aligned_cols=201 Identities=25% Similarity=0.371 Sum_probs=169.8
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 39999679980899999940130489717839999925897499999998169568773899979---------------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--------------- 695 (1513)
Q Consensus 631 ~I~~~~~sf~w~~~~~~~~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g--------------- 695 (1513)
.|+++|++++|+. .++|+|+||++++|+.++++|++|||||||+++|.|.++|++|+|.++|
T Consensus 3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 1899869999899---9998560668869989999999998099999999648788989899999980356644424532
Q ss_pred --EEEEECCCCCCCCC-CHHHHHCCCC---CCCCH----HHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf --48999278766676-4789870499---99914----79999999820778843228997301379987774799999
Q 000432 696 --TKAYVPQSPWILTG-NIRENILFGN---QYDSC----KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRI 765 (1513)
Q Consensus 696 --~~ayv~Q~~wi~~g-TIreNIlfG~---~~d~~----~y~~vi~ac~L~~dl~~lp~Gd~T~IGE~G~nLSGGQkQRI 765 (1513)
.++||+|+|-++.. |++||+.|+. ..+.+ +.+++++.+.+.+..+ .....||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~-----------~~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-----------RKPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-----------CCGGGSCHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHC-----------CCHHHCCHHHHHHH
T ss_conf 2551200221222310116676330687729998999999999998759966762-----------99334999999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHH
Q ss_conf 9999870299789860767788977799999999834209--9379998059896123-888999939869781596889
Q 000432 766 QIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK--DKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEEL 842 (1513)
Q Consensus 766 aLARAly~~adI~lLDDp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~~~G~~~eL 842 (1513)
+||||+..+|+++||||||++||+.+...+. +.+..+.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+.+|+
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~-~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el 227 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMR-AELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHH-HHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 9999982699889825887656989998999-999999863698899995999999996999999989999998599999
Q ss_pred HHCC
Q ss_conf 8418
Q 000432 843 LKQN 846 (1513)
Q Consensus 843 l~~~ 846 (1513)
+++.
T Consensus 228 ~~~P 231 (240)
T d1g2912 228 YDKP 231 (240)
T ss_dssp HHSC
T ss_pred HHCC
T ss_conf 8289
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-38 Score=313.43 Aligned_cols=202 Identities=23% Similarity=0.376 Sum_probs=168.0
Q ss_pred EEEEEEEEEECCCCCC-CCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 9999679980899999-9401304897178399999258974999999981695687738999794--------------
Q 000432 632 VEVVNGKFSWNPESSS-PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------- 696 (1513)
Q Consensus 632 I~~~~~sf~w~~~~~~-~~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~-------------- 696 (1513)
|+++|++++|+.+... .+|+|+||++++|+.++|+|++|||||||+++|.|..+|++|+|.++|.
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred --EEEECCCCCCCCC-CHHHHHCCCC---CCCC----HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf --8999278766676-4789870499---9991----4799999998207788432289973013799877747999999
Q 000432 697 --KAYVPQSPWILTG-NIRENILFGN---QYDS----CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQ 766 (1513)
Q Consensus 697 --~ayv~Q~~wi~~g-TIreNIlfG~---~~d~----~~y~~vi~ac~L~~dl~~lp~Gd~T~IGE~G~nLSGGQkQRIa 766 (1513)
++||+|++-++.. |++|||.|+. ..++ ++..+.++.+.|.+.. ......||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~-----------~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-----------DSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTT-----------SSCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH-----------HCCHHHCCHHHHHHHH
T ss_conf 16643022522279964999999999984999899999999999976990355-----------4894349999998999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHH
Q ss_conf 99987029978986076778897779999999983420--99379998059896123-8889999398697815968898
Q 000432 767 IARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELL 843 (1513)
Q Consensus 767 LARAly~~adI~lLDDp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~~~G~~~eLl 843 (1513)
||||+..+|+++|+||||++||+.+...+++ .+..+. .++|+|+|||+++.+.. ||+|++|++|+|++.|+.+|++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~-~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILE-LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHH-HHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 8640105898687446556589888567999-999998646978999838999999869999999799999987999997
Q ss_pred HC
Q ss_conf 41
Q 000432 844 KQ 845 (1513)
Q Consensus 844 ~~ 845 (1513)
++
T Consensus 230 ~~ 231 (240)
T d3dhwc1 230 SH 231 (240)
T ss_dssp CS
T ss_pred HC
T ss_conf 28
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.7e-38 Score=312.47 Aligned_cols=200 Identities=25% Similarity=0.361 Sum_probs=160.5
Q ss_pred EEEEEEEEEECCCCC-CCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 999967998089999-99401304897178399999258974999999981695687738999794--------------
Q 000432 632 VEVVNGKFSWNPESS-SPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------- 696 (1513)
Q Consensus 632 I~~~~~sf~w~~~~~-~~~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~-------------- 696 (1513)
|+++|++++|+.... ..+|+|+||++++|+.++|+|++|||||||+++|.|..+|++|+|.++|.
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred ---EEEECCCCCCCC-CCHHHHHCCCCC------CCC-HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf ---899927876667-647898704999------991-479999999820778843228997301379987774799999
Q 000432 697 ---KAYVPQSPWILT-GNIRENILFGNQ------YDS-CKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRI 765 (1513)
Q Consensus 697 ---~ayv~Q~~wi~~-gTIreNIlfG~~------~d~-~~y~~vi~ac~L~~dl~~lp~Gd~T~IGE~G~nLSGGQkQRI 765 (1513)
++||+|+|-++. -|++||+.|+.. ++. ++.+++.+...+ -.+++. .....-.+|||||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~L~~~---~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM----AELEER---FANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHH----TTCCGG---GTTCCGGGSCHHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH----HCHHHH---HHCCCHHHCCHHHHHHH
T ss_conf 55577880412417686688877578887224789999999999998876----242345---53488023899999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCH
Q ss_conf 999987029978986076778897779999999983420--99379998059896123888999939869781596
Q 000432 766 QIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL--KDKSVLYVTHQVEFLPAADIILVMENGRIAQAGRF 839 (1513)
Q Consensus 766 aLARAly~~adI~lLDDp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~~~G~~ 839 (1513)
+||||+..+|+++|||||||+||+.+...+++ .+..+. .++|+|+|||+++....||+|++|++|+|++.|+.
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~-~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQ-LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 98756522788899468765469899999999-9999998439999998788899986998999989999995257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.5e-37 Score=305.99 Aligned_cols=201 Identities=23% Similarity=0.412 Sum_probs=169.6
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 399996799808999999401304897178399999258974999999981695687738999794--------------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------- 696 (1513)
Q Consensus 631 ~I~~~~~sf~w~~~~~~~~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~-------------- 696 (1513)
.++++|.+++|+. .++|+||||++++||.++|+|++|||||||+++|.|..+|++|+|.++|.
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 6999978999899---9988150668869979999989998299999999747667899779999993367752000023
Q ss_pred ------------EEEECCCCCCCC-CCHHHHHCCC----CCCCC----HHHHHHHHHHHCHHHH-HHCCCCCCCCCCCCC
Q ss_conf ------------899927876667-6478987049----99991----4799999998207788-432289973013799
Q 000432 697 ------------KAYVPQSPWILT-GNIRENILFG----NQYDS----CKYDRTVEACALVKDF-ELFASGDLTEIGERG 754 (1513)
Q Consensus 697 ------------~ayv~Q~~wi~~-gTIreNIlfG----~~~d~----~~y~~vi~ac~L~~dl-~~lp~Gd~T~IGE~G 754 (1513)
++||+|+|-++. -|+.|||.++ ...+. ++..++++.+.+.+.. +..|
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p----------- 147 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP----------- 147 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC-----------
T ss_conf 517679997454489983323141101021365657876299989999999999998299524430682-----------
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCC-CCEEEEEECCE
Q ss_conf 87774799999999987029978986076778897779999999983420-99379998059896123-88899993986
Q 000432 755 INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPA-ADIILVMENGR 832 (1513)
Q Consensus 755 ~nLSGGQkQRIaLARAly~~adI~lLDDp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~ 832 (1513)
..||||||||++||||+..+|++++|||||++||+.+...|++ .+..+. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~-ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~ 226 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 226 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 2056778889899999843998788524555688788889987-655410368833899489999998699999997999
Q ss_pred EEEECCHHHHHHCC
Q ss_conf 97815968898418
Q 000432 833 IAQAGRFEELLKQN 846 (1513)
Q Consensus 833 I~~~G~~~eLl~~~ 846 (1513)
|++.|+.+|++.+-
T Consensus 227 iv~~g~~~ev~~~P 240 (258)
T d1b0ua_ 227 IEEEGDPEQVFGNP 240 (258)
T ss_dssp EEEEECHHHHHHSC
T ss_pred EEEECCHHHHHHCC
T ss_conf 99984999998389
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.8e-36 Score=299.26 Aligned_cols=206 Identities=25% Similarity=0.369 Sum_probs=165.5
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 399996799808999999401304897178399999258974999999981695687738999794--------------
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------- 696 (1513)
Q Consensus 631 ~I~~~~~sf~w~~~~~~~~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~-------------- 696 (1513)
-++++|++.+|+. .++|+||||++++||.++++|++|||||||+++|.|.++|.+|+|.++|.
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 6999778999799---6887121799889979999999998499999999779768873799999966405699999833
Q ss_pred EEEECCCCCCC-CCCHHHHHCCCCCCC--------------CHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 89992787666-764789870499999--------------147999999982077884322899730137998777479
Q 000432 697 KAYVPQSPWIL-TGNIRENILFGNQYD--------------SCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQ 761 (1513)
Q Consensus 697 ~ayv~Q~~wi~-~gTIreNIlfG~~~d--------------~~~y~~vi~ac~L~~dl~~lp~Gd~T~IGE~G~nLSGGQ 761 (1513)
++|++|+|-++ +-|++|||.+|.... .++.+..-++-.+.+.+. ..........+|||||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~~~~LSgG~ 155 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK-----LSHLYDRKAGELSGGQ 155 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTT-----CGGGTTSBGGGSCHHH
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCC-----CCHHCCCCHHHCCCHH
T ss_conf 87257764247887423214301333034504566542135328999999999987619-----6302059535699188
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCC-CCCCEEEEEECCEEEEECCH
Q ss_conf 999999998702997898607677889777999999998342-0993799980598961-23888999939869781596
Q 000432 762 KQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI-LKDKSVLYVTHQVEFL-PAADIILVMENGRIAQAGRF 839 (1513)
Q Consensus 762 kQRIaLARAly~~adI~lLDDp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~~~G~~ 839 (1513)
|||++||||+..+|+++||||||++||+.+...+++ .+..+ -+|+|+|+|||+++.+ ..||+|++|++|+|+..|+.
T Consensus 156 ~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~-~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~ 234 (254)
T d1g6ha_ 156 MKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN-HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 234 (254)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECH
T ss_conf 889999999975927232439765699999999999-9999997899899994769999986999999969989999668
Q ss_pred HHHHHC
Q ss_conf 889841
Q 000432 840 EELLKQ 845 (1513)
Q Consensus 840 ~eLl~~ 845 (1513)
+|+.++
T Consensus 235 ~e~~~~ 240 (254)
T d1g6ha_ 235 EEEIKN 240 (254)
T ss_dssp HHHHHH
T ss_pred HHHHHC
T ss_conf 998654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.2e-36 Score=300.63 Aligned_cols=207 Identities=27% Similarity=0.439 Sum_probs=169.9
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------
Q ss_conf 852399996799808999999401304897178399999258974999999981695687738999794-----------
Q 000432 628 SEFEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT----------- 696 (1513)
Q Consensus 628 ~~~~I~~~~~sf~w~~~~~~~~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~----------- 696 (1513)
++.-++++|.+++|.. ..+|+|+||++++||.++++||+|||||||+++|.|.++|.+|+|.++|.
T Consensus 3 sd~~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~ 79 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVIN 79 (240)
T ss_dssp CSEEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred CCEEEEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHH
T ss_conf 5607999618999899---8888302578889979999999998599999999678888803898424434466088888
Q ss_pred ---EEEECCCCCCCCC-CHHHHHCCCCC--CCCHHHHHHHH-HHHCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ---8999278766676-47898704999--99147999999-98207788432289973013799877747999999999
Q 000432 697 ---KAYVPQSPWILTG-NIRENILFGNQ--YDSCKYDRTVE-ACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIAR 769 (1513)
Q Consensus 697 ---~ayv~Q~~wi~~g-TIreNIlfG~~--~d~~~y~~vi~-ac~L~~dl~~lp~Gd~T~IGE~G~nLSGGQkQRIaLAR 769 (1513)
++|+||++-+|.. |++||+.++.. .+.+...+.++ +..+...++ +- ......+||||||||++|||
T Consensus 80 r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~----~~~~~~~LSGG~~Qrv~iAr 152 (240)
T d1ji0a_ 80 RMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK---ER----LKQLGGTLSGGEQQMLAIGR 152 (240)
T ss_dssp HTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH---TT----TTSBSSSSCHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHH---HH----HHCCHHHCCHHHHHHHHHHH
T ss_conf 742355676554577636999999888732788899999999998741768---88----75854338999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCC-CCCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 8702997898607677889777999999998342-0993799980598961-23888999939869781596889841
Q 000432 770 AVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGI-LKDKSVLYVTHQVEFL-PAADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 770 Aly~~adI~lLDDp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~~~G~~~eLl~~ 845 (1513)
|+..+|++++|||||++||+.+...+++ .++.+ -+++|+|++||+++.+ ..||+|++|++|+|++.|+.+|+.++
T Consensus 153 aL~~~P~lLllDEPt~gLD~~~~~~i~~-~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 153 ALMSRPKLLMMDEPSLGLAPILVSEVFE-VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHHCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 9982998740039886799999999999-9999996899899995889999996999999989999998489998429
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-36 Score=299.01 Aligned_cols=209 Identities=20% Similarity=0.265 Sum_probs=181.3
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEE
Q ss_conf 07998789997699895200115896289299998699998989999995057899748999385279999577620008
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i~ 1340 (1513)
-++++||+.+| +|++|||+|++||.+||+|++|||||||+++|.|+. |.+|+|.++|.|+.....+.++...+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCCC------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 99998741571------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EECCCCCC-CCCCHHHCCCCC--CCCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHCC--
Q ss_conf 87477754-667675504879--9999999999999849938998511022101004999889059999999999705--
Q 000432 1341 IIPQDPTL-FDGTVRGNLDPL--VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLK-- 1415 (1513)
Q Consensus 1341 iIpQdp~L-F~GTIR~NLdp~--~~~sdeei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr-- 1415 (1513)
+++|+... |..++.+|+... .....+.+.++++.+++.+. ++. ...+||||||||++||||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~----~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-------LGR----STNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTT-------TTS----BGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH-------HCC----CHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 4512135774420988764100146689999999986598767-------676----84456998899999999998517
Q ss_pred -----CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf -----998899856777999987999999999855-99389986159135752-1979999498896734925897128
Q 000432 1416 -----KSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVID-SDLVLVLSDGRIAEYDSPTKLLERE 1487 (1513)
Q Consensus 1416 -----~~~ILiLDEaTsslD~~Td~~Iq~~ir~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~gsp~~Ll~~~ 1487 (1513)
+|+|++|||||+++|+.+...+.+.|++.. .++|+|+++|+++.+.. ||||++|++|++++.|+|++++.++
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH
T ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 1338998899971877778989999999999999867999999967799999979999999799899988999981886
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.1e-35 Score=293.13 Aligned_cols=205 Identities=24% Similarity=0.329 Sum_probs=167.9
Q ss_pred CEEEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE------------E
Q ss_conf 2399996799808999999401304897178399999258974999999981695687738999794------------8
Q 000432 630 FEVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT------------K 697 (1513)
Q Consensus 630 ~~I~~~~~sf~w~~~~~~~~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~------------~ 697 (1513)
++|+++|.+.+|.. .++|+|+||++++|+.++++|++|||||||+++|.|+++|.+|+|.++|. +
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CCEEEEEEEEEECC---EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHE
T ss_conf 97899958999999---999806256884897999999999999999999966988788879998672446839887218
Q ss_pred EEECCCCCCCC-CCHHHHHCCCCC---CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99927876667-647898704999---99147999999982077884322899730137998777479999999998702
Q 000432 698 AYVPQSPWILT-GNIRENILFGNQ---YDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQ 773 (1513)
Q Consensus 698 ayv~Q~~wi~~-gTIreNIlfG~~---~d~~~y~~vi~ac~L~~dl~~lp~Gd~T~IGE~G~nLSGGQkQRIaLARAly~ 773 (1513)
+||||++.++. -|++||+.|... .+.++.++.++... +.+ |.......+-.+||||||||++||||+.+
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l-----~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~~ 150 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT-----EIA--GLGEKIKDRVSTYSKGMVRKLLIARALMV 150 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH-----HHC--CCHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 67500154687866778889899861799899999999999-----867--97888850453379989899999999865
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 997898607677889777999999998342-099379998059896123-888999939869781596889841
Q 000432 774 DADIYLLDDPFSAVDAHTGTQLFKDCLMGI-LKDKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 774 ~adI~lLDDp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~~~G~~~eLl~~ 845 (1513)
+|+|++|||||++||+.+..+++ +.+..+ -+++|+|++||+++.+.. ||+|++|++|+|++.|+.+|+.++
T Consensus 151 ~p~illLDEPt~gLD~~~~~~i~-~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 151 NPRLAILDEPTSGLDVLNAREVR-KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 99988733798897989999999-99999996599899995989999996999999989999999289999865
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.5e-35 Score=288.25 Aligned_cols=194 Identities=29% Similarity=0.455 Sum_probs=154.4
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------EEEECCCCCCCC-CCHHHHHC
Q ss_conf 401304897178399999258974999999981695687738999794-----------899927876667-64789870
Q 000432 649 TLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-----------KAYVPQSPWILT-GNIRENIL 716 (1513)
Q Consensus 649 ~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~-----------~ayv~Q~~wi~~-gTIreNIl 716 (1513)
.+ |+||+++ ++.++++||+|||||||+++|.|.++|++|+|.++|. ++||+|++-++. -|++|||.
T Consensus 15 ~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 15 RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHH
T ss_conf 99-9999749-979999979998099999999739998962899999998869989928522523144352201557666
Q ss_pred CCCC-CCCHHH-HHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 4999-991479-99999982077884322899730137998777479999999998702997898607677889777999
Q 000432 717 FGNQ-YDSCKY-DRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQ 794 (1513)
Q Consensus 717 fG~~-~d~~~y-~~vi~ac~L~~dl~~lp~Gd~T~IGE~G~nLSGGQkQRIaLARAly~~adI~lLDDp~SAlD~~t~~~ 794 (1513)
||.. ++++.. +++.+++.. + |...........||||||||++||||+..+|++++||||||+||+++...
T Consensus 93 ~~l~~~~~~~~~~~v~~~l~~------~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~ 164 (240)
T d2onka1 93 YGLRNVERVERDRRVREMAEK------L--GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164 (240)
T ss_dssp TTCTTSCHHHHHHHHHHHHHT------T--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHH------C--CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHH
T ss_conf 532336778899999999986------3--83756657944489999899999877751677067528655588799999
Q ss_pred HHHHHHHHHCC--CCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHHCCC-CHHHHH
Q ss_conf 99999834209--9379998059896123-88899993986978159688984183-079999
Q 000432 795 LFKDCLMGILK--DKSVLYVTHQVEFLPA-ADIILVMENGRIAQAGRFEELLKQNI-GFEVLV 853 (1513)
Q Consensus 795 i~~~~i~~~l~--~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~~~G~~~eLl~~~~-~f~~l~ 853 (1513)
+.+ .+..+.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+.+|+++... ..++++
T Consensus 165 i~~-~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl 226 (240)
T d2onka1 165 LME-ELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226 (240)
T ss_dssp HHH-HHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHG
T ss_pred HHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHHHHH
T ss_conf 999-99999874397699981899999996999999989999999069998329988999985
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.6e-34 Score=282.19 Aligned_cols=190 Identities=25% Similarity=0.415 Sum_probs=161.9
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEE
Q ss_conf 07998789997699895200115896289299998699998989999995057899748999385279999577620008
Q 000432 1261 TISFHNLQIRYAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLG 1340 (1513)
Q Consensus 1261 ~I~~~nvs~~Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i~ 1340 (1513)
.|+++|++++|.. +||+|+||+|++||.+||+|++|||||||++++.|++.|++|+|.+||.++. .+|.+++
T Consensus 2 ~lev~~ls~~y~~---~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~-----~~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 73 (200)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred EEEEEEEEEEECC---EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHH-----HHCCCEE
T ss_conf 5999989999399---2884208898599899999999971999999996620567788999989626-----7367089
Q ss_pred EECCCCCCCCC-CHHHCCCC----C-CCCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 87477754667-67550487----9-999999999999984993899851102210100499988905999999999970
Q 000432 1341 IIPQDPTLFDG-TVRGNLDP----L-VQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLL 1414 (1513)
Q Consensus 1341 iIpQdp~LF~G-TIR~NLdp----~-~~~sdeei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARALL 1414 (1513)
++||++.++.. |+++|+.. + ...+++++.++++..++.+ ++..++ +||+|||||++||||++
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~----~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKLG----ELSQGTIRRVQLASTLL 141 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBGG----GSCHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC--------CCCCCC----CCCCCHHHHHHHHHHHH
T ss_conf 995013578882899999999975488637999999998748856--------301268----68971888899999886
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEEC
Q ss_conf 599889985677799998799999999985599389986159135752197999949
Q 000432 1415 KKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSD 1471 (1513)
Q Consensus 1415 r~~~ILiLDEaTsslD~~Td~~Iq~~ir~~f~~~TvI~IAHRl~ti~~~DrIlVL~~ 1471 (1513)
.+|++++|||||+++|+++...+.+.|++..++.++++|+|+ +.+..||++.+|.+
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~-~~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEES-SCCTTSSEEEEGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE-CHHHHCCHHHHEEE
T ss_conf 499899986862016999999999999999867999999991-62544161234010
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-32 Score=267.49 Aligned_cols=195 Identities=23% Similarity=0.387 Sum_probs=160.9
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCE-------------E
Q ss_conf 399996799808999999401304897178399999258974999999981695687738999794-------------8
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGT-------------K 697 (1513)
Q Consensus 631 ~I~~~~~sf~w~~~~~~~~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~-------------~ 697 (1513)
-++++|++.+ ..|+||||+|++||.++|+|++|||||||+++|.|.. +.+|+|.++|. .
T Consensus 3 il~~~dv~~~-------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCT-------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCCC-------CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 9999874157-------1555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEECCCCC-CCCCCHHHHHCCCCCC--CCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-
Q ss_conf 99927876-6676478987049999--9147999999982077884322899730137998777479999999998702-
Q 000432 698 AYVPQSPW-ILTGNIRENILFGNQY--DSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQ- 773 (1513)
Q Consensus 698 ayv~Q~~w-i~~gTIreNIlfG~~~--d~~~y~~vi~ac~L~~dl~~lp~Gd~T~IGE~G~nLSGGQkQRIaLARAly~- 773 (1513)
+|++|+.. .+..++.+|+.++... ..++.+++++.+.+. ..++.+..+||||||||++||||+++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-----------DKLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCT-----------TTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCH-----------HHHCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 245121357744209887641001466899999999865987-----------676768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCC-CCCCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf ------997898607677889777999999998342-099379998059896-123888999939869781596889841
Q 000432 774 ------DADIYLLDDPFSAVDAHTGTQLFKDCLMGI-LKDKSVLYVTHQVEF-LPAADIILVMENGRIAQAGRFEELLKQ 845 (1513)
Q Consensus 774 ------~adI~lLDDp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~-l~~aD~Iivl~~G~I~~~G~~~eLl~~ 845 (1513)
+|+|+|||||||+||+.....+. +.++.+ .+++|+|++||+++. ...||+|++|++|+|++.|+.+|++..
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~-~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHH-HHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 71338998899971877778989999999-99999986799999996779999997999999979989998899998188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=1.1e-30 Score=253.65 Aligned_cols=182 Identities=21% Similarity=0.432 Sum_probs=143.0
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECC--------EEEEECC
Q ss_conf 39999679980899999940130489717839999925897499999998169568773899979--------4899927
Q 000432 631 EVEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG--------TKAYVPQ 702 (1513)
Q Consensus 631 ~I~~~~~sf~w~~~~~~~~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g--------~~ayv~Q 702 (1513)
.++++|.+|+|+ +++|+|+||++++|+.++|+|++|||||||+++|.|.++|.+|+|.++| .++|+||
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~ 77 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 77 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEEEEE
T ss_conf 599998999939----9288420889859989999999997199999999662056778899998962673670899950
Q ss_pred CCCCCCC-CHHHHHCC-----CCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 8766676-47898704-----99999147999999982077884322899730137998777479999999998702997
Q 000432 703 SPWILTG-NIRENILF-----GNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDAD 776 (1513)
Q Consensus 703 ~~wi~~g-TIreNIlf-----G~~~d~~~y~~vi~ac~L~~dl~~lp~Gd~T~IGE~G~nLSGGQkQRIaLARAly~~ad 776 (1513)
++.++.. |++||+.+ |.+.++++..+.++...+ +. +.++-.+||||||||++||||++++|+
T Consensus 78 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~------~~------~~~~~~~LSgG~~qrv~ia~al~~~~~ 145 (200)
T d1sgwa_ 78 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV------LD------LKKKLGELSQGTIRRVQLASTLLVNAE 145 (200)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTC------CC------TTSBGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC------CC------CCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 135788828999999999754886379999999987488------56------301268689718888999998864998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 898607677889777999999998342099379998059896123888999939
Q 000432 777 IYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILVMEN 830 (1513)
Q Consensus 777 I~lLDDp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~ 830 (1513)
++||||||++||+.+...+++ .+....+++++++++|+- -+..||.+.+|..
T Consensus 146 llllDEPt~gLD~~~~~~i~~-~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 146 IYVLDDPVVAIDEDSKHKVLK-SILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp EEEEESTTTTSCTTTHHHHHH-HHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred EEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 999868620169999999999-999998679999999916-2544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.95 E-value=2.3e-22 Score=188.33 Aligned_cols=306 Identities=11% Similarity=0.080 Sum_probs=240.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998999999999999999999999999999999850168865168999999999999999999999999999999999
Q 000432 308 IFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRL 387 (1513)
Q Consensus 308 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~ri 387 (1513)
+.+.+|+.+....++.++..++....|++++.++|......+. ...+.+++.+++..++..++.....+...+.+.++
T Consensus 10 ~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~--~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (319)
T d3b60a2 10 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDR--SVLLWMPLVVIGLMILRGITSYISSYCISWVSGKV 87 (319)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTH--HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999999999999999999987446877--89999999999999976453354665443431000
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999816991000678999999999999999999999979-99999999999999998887799999999999
Q 000432 388 RAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFYSN-YMFMLPVQISLAIYILRTNLGLGSLAALAATL 466 (1513)
Q Consensus 388 r~~L~~~iy~K~L~ls~~~~~~~~~G~ivn~is~D~~~i~~~~~~~~-~~~~~pl~i~i~l~~L~~~lg~a~l~gl~~~~ 466 (1513)
...++..+|+|.++.+....+++++|+++++++.|++.+.++..... ......+.++.++++++..-...++..++.++
T Consensus 88 ~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~ 167 (319)
T d3b60a2 88 VMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAP 167 (319)
T ss_dssp HHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 11000477776501011110233322111112121210000111112001123344566888887652002102566899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999449999986315999999999999999999999999899999999
Q 000432 467 TVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSATSAFIFW 546 (1513)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~ 546 (1513)
+...+.....++..+..++..+..++..+...|.++|++++|.+++|+.+.++.++..++..+...+.............
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (319)
T d3b60a2 168 IVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQ 247 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 99998876666877878988764456778877762487235311101024566666531356778888877774064010
Q ss_pred HHHH--HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9989--99999999999950465688999999999999999999999999999999999999998334435
Q 000432 547 GSPT--FISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDEI 615 (1513)
Q Consensus 547 ~~p~--~v~~~~f~~~~~~~~~Lt~~~vf~~l~~f~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~ 615 (1513)
.... .+.+..++.+....+.+|+|.+++++.+...+..|+..++..+..+.++.+|.+|+.++++.|++
T Consensus 248 ~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 248 LIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 00000237999999999980997899999999999999999999999999999999999999999669989
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.94 E-value=5.3e-22 Score=185.43 Aligned_cols=308 Identities=16% Similarity=0.118 Sum_probs=238.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999899999999999999999999999999999985016886516---8--999999999999999999999999999
Q 000432 307 AIFFFIRKKAAINASFAVINAATSYVGPYLINDFVNFLTDKKSRSLE---S--GYLLALAFLGAKMVETIAQRQWIFGAR 381 (1513)
Q Consensus 307 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~---~--g~~l~~~l~~~~~~~~l~~~~~~~~~~ 381 (1513)
.+.+.+|+.+....++.++..++....|++++.++|.+......... . .+.+++++++..++..++.....+...
T Consensus 7 ~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (323)
T d2hyda2 7 QFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQ 86 (323)
T ss_dssp HHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999998626774215568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999998169910006789999999999999999999999-7999999999999999998887799999
Q 000432 382 QLGLRLRAALISHLYRKGLHLSSQSRQSHTSGEIINYMSVDVQRISDFIFY-SNYMFMLPVQISLAIYILRTNLGLGSLA 460 (1513)
Q Consensus 382 ~~~~rir~~L~~~iy~K~L~ls~~~~~~~~~G~ivn~is~D~~~i~~~~~~-~~~~~~~pl~i~i~l~~L~~~lg~a~l~ 460 (1513)
+.+.+++..++..+|+|.++++...++++++|+++++++.|++.+.++... ....+...+.+++++..++..-...++.
T Consensus 87 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 166 (323)
T d2hyda2 87 WTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLA 166 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99985567788887665402332100012221100011113321001113454201114665334654400001468889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999449999986315999999999999999999999999899
Q 000432 461 ALAATLTVMTCNIPITRIQKRFQSKIMDAKDNRMRATSEVLKNMKTLKLQAWDTRFLQKLESLRQVECIWLWKSLRLSAT 540 (1513)
Q Consensus 461 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~ 540 (1513)
.++..++.........++..+..++..+..++..+.+.|.++|+++||.+++|+.+.+++.+..++..+...+.......
T Consensus 167 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~ 246 (323)
T d2hyda2 167 ALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAY 246 (323)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99988777777764123332026778989999997878875597023467641110023302231111015677652000
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999998--99999999999995046568899999999999999999999999999999999999999833443
Q 000432 541 SAFIFWGSP--TFISVVTFGACMLLGIQLTAGRVLSALATFRMLQDPIFNLPDLLSNIAQGKVSADRIAAYLQEDE 614 (1513)
Q Consensus 541 ~~~~~~~~p--~~v~~~~f~~~~~~~~~Lt~~~vf~~l~~f~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e 614 (1513)
......... ..+.+..++.+....+.+++|.+++++.++..+..|+..++..+..+.++.+|.+|+.++|++++
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 247 SFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 0111110120558999999999998499889999999999999999999999999999999999999999977999
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.94 E-value=2.3e-21 Score=180.51 Aligned_cols=314 Identities=14% Similarity=0.105 Sum_probs=250.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78899897311236999999999999999985221001359998889998405699999999977899999999999999
Q 000432 928 EVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEPALGMNIVLLVYTLLTVGSSLCVLLRAMLVAI 1007 (1513)
Q Consensus 928 ~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~i~~~~wl~~~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~ 1007 (1513)
+.+++|++..++. ..+.+++.++..+.....++.++...|.............+...+.++.+...++.+++.+....
T Consensus 5 krl~~~~~~~k~~--l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (319)
T d3b60a2 5 RRLWPTIAPFKAG--LIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISW 82 (319)
T ss_dssp HHHHHHHGGGHHH--HHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999--99999999999999999999999999987446877899999999999999764533546654434
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998765554067742104568348899994125798699899999999999999999999998747999999
Q 000432 1008 TGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVAWQVFVIF 1087 (1513)
Q Consensus 1008 ~~~~~s~~l~~~l~~~ilrap~~ffd~~p~GrilnR~s~D~~~id~~l~~~i~~~~~~~~~~i~~~~vi~~~~~~~~~v~ 1087 (1513)
.+.+...+++.++++++++.|++||++.++|++++|+++|++.++..+...+...+...+.+++.++++...+|.+++++
T Consensus 83 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~ 162 (319)
T d3b60a2 83 VSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIIL 162 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 31000110004777765010111102333221111121212100001111120011233445668888876520021025
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 99999999999999899999999999984218989999980199999834099999999999996100289999999999
Q 000432 1088 IPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHNVSAMEWL 1167 (1513)
Q Consensus 1088 ip~~~l~~~~~~~y~~~~r~l~rl~~~~~spi~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1167 (1513)
+...+++..+..++.+..++..+......+...+++.|.+.|+.+||+|+.|+.+.+++.+..++..+..........+.
T Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (319)
T d3b60a2 163 VVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSIS 242 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 66899999988766668778789887644567788777624872353111010245666665313567788888777740
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999999999998-73178648999999999999999999999999999999988999999740899999
Q 000432 1168 CFRLNLLSNFVFAFSLVVLV-TLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNLPSEA 1243 (1513)
Q Consensus 1168 ~~rl~~l~~~~~~~~~~~~v-~~~~~~~~~~~~gl~lsy~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~ 1243 (1513)
.....++..+...+...+.. ....|.+++|.+...+.|...+..++..+...+.+++...+|.+|+.|+.+.|+|+
T Consensus 243 ~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E~ 319 (319)
T d3b60a2 243 DPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEK 319 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 64010000002379999999999809978999999999999999999999999999999999999999996699899
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.92 E-value=4.2e-21 Score=178.36 Aligned_cols=313 Identities=12% Similarity=0.093 Sum_probs=241.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CC-HH-H----HHHHHHHHHHHHHHHHHHH
Q ss_conf 7889989731123699999999999999998522100135999888999-84-05-6----9999999997789999999
Q 000432 928 EVYWSYLTAVKGGALVPIILLAQSSFQVLQVASNYWMAWASPPTSDGEP-AL-GM-N----IVLLVYTLLTVGSSLCVLL 1000 (1513)
Q Consensus 928 ~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~i~~~~wl~~~~~~~~~~~~-~~-~~-~----~~~~vy~~l~~~~~~~~~~ 1000 (1513)
+.+++|++..+.. ....+++.++..+..+..++.+++..|....+.. .. .. . .....+.++.+...++.+.
T Consensus 3 Krl~~~~k~~k~~--~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (323)
T d2hyda2 3 KRYLQFVKPYKYR--IFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (323)
T ss_dssp HHHHHHHGGGHHH--HHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999--99999999999999999999999999998626774215568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999876555406774210456834889999412579869989999999999999999999999874
Q 000432 1001 RAMLVAITGLRTAQKLFTNMLHSVHRAPMAFFDSTPTGRILNRASNDQSVLDLELAGRLGWCAFSIIQILGTIGVMSQVA 1080 (1513)
Q Consensus 1001 ~~~~~~~~~~~~s~~l~~~l~~~ilrap~~ffd~~p~GrilnR~s~D~~~id~~l~~~i~~~~~~~~~~i~~~~vi~~~~ 1080 (1513)
+.++....+.+...+++.++++++++.|++|||+.++|++++|+++|++.++..+...+...+..++.++..++++..++
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 160 (323)
T d2hyda2 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD 160 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999985567788887665402332100012221100011113321001113454201114665334654400001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 79999999999999999999989999999999998421898999998019999983409999999999999610028999
Q 000432 1081 WQVFVIFIPVTGICIWYQQYYIPTARELARLAEIQRAPILHHFAESLAGAATIHAFDQEDRFTNANLSLIDNHSRPWFHN 1160 (1513)
Q Consensus 1081 ~~~~~v~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~spi~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~ 1160 (1513)
|.++++.++..+++..+...+.+..++..+......+...+++.|+++|+++||+|+.|+.+.+++.+..+...+.....
T Consensus 161 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~ 240 (323)
T d2hyda2 161 VKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240 (323)
T ss_dssp TTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHH
T ss_conf 46888999988777777764123332026778989999997878875597023467641110023302231111015677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999999999999999-987317864899999999999999999999999999999998899999974089
Q 000432 1161 VSAMEWLCFRLNLLSNFVFAFSLVV-LVTLPEGIINPSIAGLAVTYGINLNVLQASIIWNICNAENKMISVERILQYSNL 1239 (1513)
Q Consensus 1161 ~~~~~wl~~rl~~l~~~~~~~~~~~-~v~~~~~~~~~~~~gl~lsy~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~ 1239 (1513)
.....+......++..+.......+ ......|.+++|.+...++|...+..++..+...+.++.....|.||+.|+.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~ 320 (323)
T d2hyda2 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 65200001111101205589999999999984998899999999999999999999999999999999999999999779
Q ss_pred CCC
Q ss_conf 999
Q 000432 1240 PSE 1242 (1513)
Q Consensus 1240 ~~E 1242 (1513)
|+|
T Consensus 321 e~e 323 (323)
T d2hyda2 321 DYD 323 (323)
T ss_dssp CCS
T ss_pred CCC
T ss_conf 998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.53 E-value=1.4e-15 Score=134.85 Aligned_cols=171 Identities=10% Similarity=0.034 Sum_probs=120.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHCCCCCCCCCHHHHHH
Q ss_conf 99998699998989999995057899748999385279999577620008874777546676755048799999999999
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWE 1370 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~~~~sdeei~~ 1370 (1513)
|++|+|++|||||||++.+.+.+.+..|.+.++|.+....+.+.........++.+.++..+...+......
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 73 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY-------- 73 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE--------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443023--------
Q ss_pred HHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHCCCC
Q ss_conf 999849938998511022101004999889059999999999705998899856777999--987999999999855993
Q 000432 1371 ALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVD--SATDGVIQKIISQEFKDR 1448 (1513)
Q Consensus 1371 aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD--~~Td~~Iq~~ir~~f~~~ 1448 (1513)
+.+... ..+|+|++|+.++++++.++|+++++||++...+ .+....+.+.+++ .++
T Consensus 74 ----------------~~~~~~----~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~--~~~ 131 (178)
T d1ye8a1 74 ----------------GVNVQY----FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNV 131 (178)
T ss_dssp ----------------EECHHH----HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTS
T ss_pred ----------------HCCCCH----HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCC--CCC
T ss_conf ----------------037625----6653201378999999740997423027773100457999999987505--797
Q ss_pred EEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHH
Q ss_conf 899861591357521979999498896734925897128839999999
Q 000432 1449 TVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIK 1496 (1513)
Q Consensus 1449 TvI~IAHRl~ti~~~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~l~~ 1496 (1513)
|+|.++|+......+|++..+++|++++.++. +.+..+.+.+.
T Consensus 132 ~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~-----nrd~~~~~i~~ 174 (178)
T d1ye8a1 132 NVVATIPIRDVHPLVKEIRRLPGAVLIELTPE-----NRDVILEDILS 174 (178)
T ss_dssp EEEEECCSSCCSHHHHHHHTCTTCEEEECCTT-----TTTTHHHHHHH
T ss_pred EEEEEECCHHHHHHHCEEEEEECCEEEEECCC-----CHHHHHHHHHH
T ss_conf 89999744778986365998719999998996-----47889999999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.32 E-value=1.4e-13 Score=119.13 Aligned_cols=147 Identities=14% Similarity=0.112 Sum_probs=103.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEE-------------EECCCCCCCCCCHHHHHCCCCCCCCHHHH
Q ss_conf 39999925897499999998169568773899979489-------------99278766676478987049999914799
Q 000432 661 MKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKA-------------YVPQSPWILTGNIRENILFGNQYDSCKYD 727 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~~a-------------yv~Q~~wi~~gTIreNIlfG~~~d~~~y~ 727 (1513)
.+++|+||+|||||||++.|+|++++..|.+.+.+... ..++.+.+...+..++..+++.
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 73 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY------- 73 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE-------
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_conf 9899998999389999999981488886469987713288887653112336677788754113455443023-------
Q ss_pred HHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC--
Q ss_conf 999998207788432289973013799877747999999999870299789860767788977799999999834209--
Q 000432 728 RTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILK-- 805 (1513)
Q Consensus 728 ~vi~ac~L~~dl~~lp~Gd~T~IGE~G~nLSGGQkQRIaLARAly~~adI~lLDDp~SAlD~~t~~~i~~~~i~~~l~-- 805 (1513)
.+...-..+++|+++|.+++++..++|+++++|||....+. . ... ...+...++
T Consensus 74 ---------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~-~-~~~-~~~l~~~l~~~ 129 (178)
T d1ye8a1 74 ---------------------GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF-S-KKF-RDLVRQIMHDP 129 (178)
T ss_dssp ---------------------EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG-C-HHH-HHHHHHHHTCT
T ss_pred ---------------------HCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH-H-HHH-HHHHHHHHCCC
T ss_conf ---------------------03762566532013789999997409974230277731004-5-799-99999875057
Q ss_pred CCEEEEECCCCCCCCCCCEEEEEECCEEEEECC
Q ss_conf 937999805989612388899993986978159
Q 000432 806 DKSVLYVTHQVEFLPAADIILVMENGRIAQAGR 838 (1513)
Q Consensus 806 ~kTvIlVTH~l~~l~~aD~Iivl~~G~I~~~G~ 838 (1513)
++|+|+++|+.+..+.+|++..+++|++++-++
T Consensus 130 ~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 130 NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CCEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 978999974477898636599871999999899
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.21 E-value=6.7e-11 Score=98.17 Aligned_cols=72 Identities=22% Similarity=0.255 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHCCEEEEE
Q ss_conf 8890599999999997----05998899856777999987999999999855-993899861591357521979999
Q 000432 1398 NWSVGQRQLFCLGRTL----LKKSSILVLDEATASVDSATDGVIQKIISQEF-KDRTVVTIAHRIHTVIDSDLVLVL 1469 (1513)
Q Consensus 1398 nLS~GQrQll~LARAL----Lr~~~ILiLDEaTsslD~~Td~~Iq~~ir~~f-~~~TvI~IAHRl~ti~~~DrIlVL 1469 (1513)
.+|||||.+++||-.+ ..++++++||||++++|+++...+.+.|++.. .++-+|+|||+......+|+++..
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.06 E-value=6.8e-09 Score=82.36 Aligned_cols=72 Identities=18% Similarity=0.308 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHH--H--HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCEEEEE
Q ss_conf 777479999999998--7--029978986076778897779999999983420-993799980598961238889999
Q 000432 756 NMSGGQKQRIQIARA--V--YQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL-KDKSVLYVTHQVEFLPAADIILVM 828 (1513)
Q Consensus 756 nLSGGQkQRIaLARA--l--y~~adI~lLDDp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~aD~Iivl 828 (1513)
.||||||.+++||=. + +.++++++||||.+++|+.+...+.+ .+.... ++.-+|++||+..++..||.++..
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~-~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA-YIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 3223047999999999995479997799968877789999999999-9999728998899995878999736617999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.92 E-value=3.2e-08 Score=77.13 Aligned_cols=75 Identities=23% Similarity=0.353 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEE--EEC
Q ss_conf 8890599999999997----0599889985677799998799999999985599389986159135752197999--949
Q 000432 1398 NWSVGQRQLFCLGRTL----LKKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLV--LSD 1471 (1513)
Q Consensus 1398 nLS~GQrQll~LARAL----Lr~~~ILiLDEaTsslD~~Td~~Iq~~ir~~f~~~TvI~IAHRl~ti~~~DrIlV--L~~ 1471 (1513)
.+|.|||++..++..+ ..+++++++|||-+++++.....+.+.|++..++.-+|++||+...+..+|+++. +++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C
Q ss_conf 8
Q 000432 1472 G 1472 (1513)
Q Consensus 1472 G 1472 (1513)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.68 E-value=9.3e-07 Score=65.57 Aligned_cols=75 Identities=27% Similarity=0.354 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEE--EE
Q ss_conf 7774799999999987----02997898607677889777999999998342099379998059896123888999--93
Q 000432 756 NMSGGQKQRIQIARAV----YQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVEFLPAADIILV--ME 829 (1513)
Q Consensus 756 nLSGGQkQRIaLARAl----y~~adI~lLDDp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iiv--l~ 829 (1513)
.+|+|||+...++..+ ..++.++++|||-++||+...+.+. +.+....++.-+|++||+..++..+|+++. |+
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~-~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFK-RLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHH-HHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEE
T ss_conf 025777667777766556542267445543203357978999999-9999855488799998988999732428999996
Q ss_pred CC
Q ss_conf 98
Q 000432 830 NG 831 (1513)
Q Consensus 830 ~G 831 (1513)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
T ss_conf 99
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=0.0034 Score=37.62 Aligned_cols=124 Identities=22% Similarity=0.258 Sum_probs=66.3
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHH
Q ss_conf 83999992589749999999816956877389997948999278766676478987049999914799999998207788
Q 000432 660 GMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDF 739 (1513)
Q Consensus 660 G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~~ayv~Q~~wi~~gTIreNIlfG~~~d~~~y~~vi~ac~L~~dl 739 (1513)
|=+++++|++|+|||||++.|.|.-.. .++..| +|.++.+......... .+
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~------------~~~~~~----~~~~~~~~~~~~~~~~-------------~~ 51 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAA------------IVTDIA----GTTRDVLREHIHIDGM-------------PL 51 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCS------------CCCSST----TCCCSCEEEEEEETTE-------------EE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCE------------EEECCC----CCCCCEEEEEEECCCC-------------EE
T ss_conf 989999899999899999999688866------------751246----6422047653202682-------------35
Q ss_pred HHCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 432289973013799--877747999999999870299789860767788977799999999834209937999805989
Q 000432 740 ELFASGDLTEIGERG--INMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVE 817 (1513)
Q Consensus 740 ~~lp~Gd~T~IGE~G--~nLSGGQkQRIaLARAly~~adI~lLDDp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~ 817 (1513)
. .+...| ..-.+.++..+..+...|.++|+++++-..+.-+.....+.+.+.+.....++.+|+|.+..+
T Consensus 52 ~--------~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~D 123 (161)
T d2gj8a1 52 H--------IIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 123 (161)
T ss_dssp E--------EEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHH
T ss_pred E--------ECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHH
T ss_conf 4--------13653212246520247899999998741332011025654203455544455542014101020465444
Q ss_pred CCC
Q ss_conf 612
Q 000432 818 FLP 820 (1513)
Q Consensus 818 ~l~ 820 (1513)
..+
T Consensus 124 l~~ 126 (161)
T d2gj8a1 124 ITG 126 (161)
T ss_dssp HHC
T ss_pred HHH
T ss_conf 335
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.08 E-value=0.00019 Score=47.42 Aligned_cols=35 Identities=31% Similarity=0.564 Sum_probs=19.5
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 17839999925897499999998169568773899
Q 000432 658 KRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVK 692 (1513)
Q Consensus 658 ~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~ 692 (1513)
+.+.-+.|+|++||||||++++|++++++..=-|.
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivt 198 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIIS 198 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEE
T ss_pred HHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf 83788899940356625789998653014562331
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=4.1e-05 Score=52.68 Aligned_cols=161 Identities=11% Similarity=0.018 Sum_probs=80.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHCCCCC------CCC-
Q ss_conf 9999869999898999999505789974899938527999957762000887477754667675504879------999-
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPL------VQY- 1363 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~------~~~- 1363 (1513)
.|.|+|+.|+|||||++.+.+.+...++.+.+.+.+........+......+.|+...+.....++.... ...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVV 82 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99998899971999999999999977997999984550122211465412343302466543001034441432231100
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999998499389985110221010049998890599999999997059988998567779999879999999998
Q 000432 1364 SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDGVIQKIISQ 1443 (1513)
Q Consensus 1364 sdeei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~ir~ 1443 (1513)
..+++.+. ....+.........+.+..+.+.....+......+.+.+.++..++++++...+..-+... .+.+.+++
T Consensus 83 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 159 (189)
T d2i3ba1 83 DLTSFEQL-ALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPL--ALVEEIRN 159 (189)
T ss_dssp CHHHHHTT-TTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCC--TTHHHHHT
T ss_pred CHHHHHHH-HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH--HHHHHHHC
T ss_conf 37777778-8999999988762189706861433330535999999999854686599961555775569--99999867
Q ss_pred HCCCCEEEEECC
Q ss_conf 559938998615
Q 000432 1444 EFKDRTVVTIAH 1455 (1513)
Q Consensus 1444 ~f~~~TvI~IAH 1455 (1513)
..+.+++.++.
T Consensus 160 -~~~~~~~~lt~ 170 (189)
T d2i3ba1 160 -RKDVKVFNVTK 170 (189)
T ss_dssp -TCCSEEEECCS
T ss_pred -CCCCEEEEECH
T ss_conf -89974999786
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.61 E-value=0.0036 Score=37.34 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=27.8
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 940130489717839999925897499999998169
Q 000432 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 648 ~~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe 683 (1513)
|.|+++.--+.+|+++.|.|++|+|||+++.-+.--
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 668887469789808999947999799999999972
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.57 E-value=0.0048 Score=36.42 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=71.1
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCE-EEECCEEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCH
Q ss_conf 178399999258974999999981695687738-9997948999278766676478987049999914799999998207
Q 000432 658 KRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT-VKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALV 736 (1513)
Q Consensus 658 ~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~-I~i~g~~ayv~Q~~wi~~gTIreNIlfG~~~d~~~y~~vi~ac~L~ 736 (1513)
.++-++.|+||+||||||.+.+++.+++....+ +.+...+-|. .
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~------~----------------------------- 200 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD------I----------------------------- 200 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC------C-----------------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC------C-----------------------------
T ss_conf 41054898767877744779998666257874699962674345------6-----------------------------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 78843228997301379987774799999999987029978986076778897779999999983420993799980598
Q 000432 737 KDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQV 816 (1513)
Q Consensus 737 ~dl~~lp~Gd~T~IGE~G~nLSGGQkQRIaLARAly~~adI~lLDDp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l 816 (1513)
++--++++.++ .|+.---+|..++-+||||++..|.- |..|++..++- .+.|+.|+-.-|--
T Consensus 201 ------~~~~q~~v~~~-----~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~a----a~tGhlV~tTlHa~ 262 (401)
T d1p9ra_ 201 ------DGIGQTQVNPR-----VDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQA----SLTGHLVMSTLHTN 262 (401)
T ss_dssp ------SSSEEEECBGG-----GTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHH----HHTTCEEEEEECCS
T ss_pred ------CCCCEEEECCC-----CCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHH----HHCCCEEEEEECCC
T ss_conf ------78870265587-----67799999999984138889845768---75999999999----72498589983367
Q ss_pred CCCCCCCE
Q ss_conf 96123888
Q 000432 817 EFLPAADI 824 (1513)
Q Consensus 817 ~~l~~aD~ 824 (1513)
+-....++
T Consensus 263 ~a~~~~~R 270 (401)
T d1p9ra_ 263 TAVGAVTR 270 (401)
T ss_dssp SSHHHHHH
T ss_pred CHHHHHHH
T ss_conf 66766543
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.49 E-value=0.022 Score=31.16 Aligned_cols=155 Identities=12% Similarity=0.102 Sum_probs=75.1
Q ss_pred CCCCEEE-EEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCCHHHH
Q ss_conf 4013048-971783999992589749999999816956877389997948999278766676478987049999914799
Q 000432 649 TLDGIQL-KVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYD 727 (1513)
Q Consensus 649 ~L~~inl-~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~~ayv~Q~~wi~~gTIreNIlfG~~~d~~~y~ 727 (1513)
.|+++=- -+++|+++.|.|++|||||+|+.-++-......+ ...|++-+ ...+.+
T Consensus 14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~------~~~~is~e-----------------~~~~~~- 69 (242)
T d1tf7a2 14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKE------RAILFAYE-----------------ESRAQL- 69 (242)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC------CEEEEESS-----------------SCHHHH-
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC------CCCEEECC-----------------CCHHHH-
T ss_conf 798845689869849999918999999999999999987232------44112126-----------------799999-
Q ss_pred HHHHHHHCHHHHHH-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHH---HHHHHHHH
Q ss_conf 99999820778843-22899730137998777479999999998702-997898607677889777999---99999834
Q 000432 728 RTVEACALVKDFEL-FASGDLTEIGERGINMSGGQKQRIQIARAVYQ-DADIYLLDDPFSAVDAHTGTQ---LFKDCLMG 802 (1513)
Q Consensus 728 ~vi~ac~L~~dl~~-lp~Gd~T~IGE~G~nLSGGQkQRIaLARAly~-~adI~lLDDp~SAlD~~t~~~---i~~~~i~~ 802 (1513)
.-.++.+..|.+. ...|....+........ .+...-.+.+++.+ ++++++.|............. .... +..
T Consensus 70 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~-l~~ 146 (242)
T d1tf7a2 70 -LRNAYSWGMDFEEMERQNLLKIVCAYPESAG-LEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIG-VTG 146 (242)
T ss_dssp -HHHHHTTSCCHHHHHHTTSEEECCCCGGGSC-HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHH-HHH
T ss_pred -HHHHHHCCCCHHHHHHCCCEEEEEEECCHHH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHH-HHH
T ss_conf -9999982998699854586179973000101-7999999999998408853322043143048999999999999-999
Q ss_pred HC--CCCEEEEECCCCC-----------CCCCCCEEEEEEC
Q ss_conf 20--9937999805989-----------6123888999939
Q 000432 803 IL--KDKSVLYVTHQVE-----------FLPAADIILVMEN 830 (1513)
Q Consensus 803 ~l--~~kTvIlVTH~l~-----------~l~~aD~Iivl~~ 830 (1513)
.+ .+.|++++.|.-. .-..||-|+.++.
T Consensus 147 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 147 YAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp HHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 99986983999985675125544577640464216999998
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.47 E-value=0.023 Score=30.98 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.4
Q ss_pred EECCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 7178399999258974999999981
Q 000432 657 VKRGMKVAICGTVGSGKSSLLSCIL 681 (1513)
Q Consensus 657 i~~G~~vaIvG~sGSGKSTLl~~ll 681 (1513)
+.+|+++.|+|+.|+|||+|+..+.
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 5589589999289998999999999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.09 E-value=0.0028 Score=38.19 Aligned_cols=33 Identities=33% Similarity=0.454 Sum_probs=26.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 783999992589749999999816956877389
Q 000432 659 RGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691 (1513)
Q Consensus 659 ~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I 691 (1513)
+|+.++++|+||.|||||+++|+|+.....|.|
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v 126 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 126 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCC
T ss_conf 698089978898778888773053555010684
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.91 E-value=0.033 Score=29.82 Aligned_cols=121 Identities=19% Similarity=0.197 Sum_probs=68.9
Q ss_pred EEEEECCCEEEEEECCCCCHHHHHHHHH--------CCCCCCCCEEEECCEEEEECCCCCCCCC-CHHHHHCCCCCCCCH
Q ss_conf 4897178399999258974999999981--------6956877389997948999278766676-478987049999914
Q 000432 654 QLKVKRGMKVAICGTVGSGKSSLLSCIL--------GEIQKMAGTVKISGTKAYVPQSPWILTG-NIRENILFGNQYDSC 724 (1513)
Q Consensus 654 nl~i~~G~~vaIvG~sGSGKSTLl~~ll--------Ge~~~~~G~I~i~g~~ayv~Q~~wi~~g-TIreNIlfG~~~d~~ 724 (1513)
|+.+. ++.+.|.||..|||||+++.+. |.+-|- ..+-++.-..|+.. -..||+.-|.. .
T Consensus 30 di~~~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA--------~~~~i~~~d~I~~~~~~~d~~~~~~S---t 97 (224)
T d1ewqa2 30 DLEMA-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA--------EEAHLPLFDGIYTRIGASDDLAGGKS---T 97 (224)
T ss_dssp EEEES-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS--------SEEEECCCSEEEEECCC------CCS---H
T ss_pred EEEEC-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEC--------CCEEEEECCEEEEEECCCCCCCCCCC---H
T ss_conf 58847-867999788734532345565899999852504613--------75199401169999877760237830---7
Q ss_pred HHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 79999999820778843228997301379987774799999999987029978986076778897779999999983420
Q 000432 725 KYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGIL 804 (1513)
Q Consensus 725 ~y~~vi~ac~L~~dl~~lp~Gd~T~IGE~G~nLSGGQkQRIaLARAly~~adI~lLDDp~SAlD~~t~~~i~~~~i~~~l 804 (1513)
...++-+.. .-++. -.+..++|+||..+.=|+.-+..+....+..+.
T Consensus 98 F~~el~~~~---~il~~------------------------------~~~~sLvliDE~~~gT~~~eg~ala~aile~L~ 144 (224)
T d1ewqa2 98 FMVEMEEVA---LILKE------------------------------ATENSLVLLDEVGRGTSSLDGVAIATAVAEALH 144 (224)
T ss_dssp HHHHHHHHH---HHHHH------------------------------CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHCC------------------------------CCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHH
T ss_conf 898678898---77502------------------------------897727855454568623320025888888886
Q ss_pred -CCCEEEEECCCCCCC
Q ss_conf -993799980598961
Q 000432 805 -KDKSVLYVTHQVEFL 819 (1513)
Q Consensus 805 -~~kTvIlVTH~l~~l 819 (1513)
++.+.+++||..+..
T Consensus 145 ~~~~~~i~tTH~~eL~ 160 (224)
T d1ewqa2 145 ERRAYTLFATHYFELT 160 (224)
T ss_dssp HHTCEEEEECCCHHHH
T ss_pred HCCCCEEEEEECHHHH
T ss_conf 2376137865202333
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.91 E-value=0.039 Score=29.26 Aligned_cols=33 Identities=30% Similarity=0.300 Sum_probs=26.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 289299998699998989999995057899748
Q 000432 1287 PGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS 1319 (1513)
Q Consensus 1287 ~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~ 1319 (1513)
.++--+-+.|+|||||||.+.++++.......+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 410548987678777447799986662578746
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.85 E-value=0.0035 Score=37.50 Aligned_cols=25 Identities=44% Similarity=0.638 Sum_probs=21.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 8399999258974999999981695
Q 000432 660 GMKVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 660 G~~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
+=++||+|.+|+|||||+++++|.-
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8889999999999999999997787
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.81 E-value=0.0078 Score=34.72 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=12.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHC
Q ss_conf 3999992589749999999816
Q 000432 661 MKVAICGTVGSGKSSLLSCILG 682 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llG 682 (1513)
+++.++|++||||||+.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.76 E-value=0.03 Score=30.18 Aligned_cols=125 Identities=17% Similarity=0.170 Sum_probs=66.0
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHH--------CCC-CCCCCEEEECCEEEEECCCCCCCC-CCHHHHHCC
Q ss_conf 9401304897178399999258974999999981--------695-687738999794899927876667-647898704
Q 000432 648 PTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCIL--------GEI-QKMAGTVKISGTKAYVPQSPWILT-GNIRENILF 717 (1513)
Q Consensus 648 ~~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~ll--------Ge~-~~~~G~I~i~g~~ayv~Q~~wi~~-gTIreNIlf 717 (1513)
++=.|+++. +.+....|.||..|||||+++.+. |.+ +..+.++.+ -..|+. --..|++.-
T Consensus 30 ~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~---------~d~I~~~~~~~d~~~~ 99 (234)
T d1wb9a2 30 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGP---------IDRIFTRVGAADDLAS 99 (234)
T ss_dssp CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECC---------CCEEEEEEC-------
T ss_pred CCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEECCC---------CHHHEEEECCCCCCCC
T ss_conf 264057988-995399995467313689999879999998729767417666134---------4202348746753436
Q ss_pred CCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 99999147999999982077884322899730137998777479999999998702997898607677889777999999
Q 000432 718 GNQYDSCKYDRTVEACALVKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFK 797 (1513)
Q Consensus 718 G~~~d~~~y~~vi~ac~L~~dl~~lp~Gd~T~IGE~G~nLSGGQkQRIaLARAly~~adI~lLDDp~SAlD~~t~~~i~~ 797 (1513)
|...=.....+.-+. ++ --.+..++|+||+.+.=++.-+..+..
T Consensus 100 ~~S~F~~E~~~~~~i------l~------------------------------~~~~~sLvliDE~~~gT~~~eg~~l~~ 143 (234)
T d1wb9a2 100 GRSTFMVEMTETANI------LH------------------------------NATEYSLVLMDEIGRGTSTYDGLSLAW 143 (234)
T ss_dssp ----CHHHHHHHHHH------HH------------------------------HCCTTEEEEEESCCCCSSSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHH------HH------------------------------HCCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 531899999999999------97------------------------------454660885322235877456667898
Q ss_pred HHHHHHC-CC-CEEEEECCCCCC
Q ss_conf 9983420-99-379998059896
Q 000432 798 DCLMGIL-KD-KSVLYVTHQVEF 818 (1513)
Q Consensus 798 ~~i~~~l-~~-kTvIlVTH~l~~ 818 (1513)
..+..+. +. ..+|+.||..+.
T Consensus 144 a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 144 ACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp HHHHHHHHTTCCEEEEECSCGGG
T ss_pred HHHHHHHCCCCCEEEEECCHHHH
T ss_conf 76454320454428985246877
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.75 E-value=0.037 Score=29.39 Aligned_cols=175 Identities=11% Similarity=0.078 Sum_probs=79.6
Q ss_pred EEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCEECCCCCHHHHHHCE-EEECCCCCCCCCCHHHC
Q ss_conf 001158962892999986999989899999950-5789974899938527999957762000-88747775466767550
Q 000432 1279 LKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFR-IVEPTMGSIIIDNVDITKIGLHDLRSRL-GIIPQDPTLFDGTVRGN 1356 (1513)
Q Consensus 1279 Lk~is~~i~~GekvgIVGrTGSGKSTL~~~L~r-l~~p~~G~I~IDGvdI~~i~l~~LR~~i-~iIpQdp~LF~GTIR~N 1356 (1513)
|+.+.--+.+|+-+-|.|++|+||||++.-+.. +..-..-.+.+-.. ..+.+.+..++ +...+-+.--.
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~---E~~~~~~~~r~~~~~~~~~~~~~------ 95 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML---EESVEETAEDLIGLHNRVRLRQS------ 95 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES---SSCHHHHHHHHHHHHTTCCGGGC------
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE---CCCHHHHHHHHHHHHHCCCCHHH------
T ss_conf 888746978980899994799979999999997265533663457640---11113577699998645871010------
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHH--CCCCCEEEEECCCC-----CC
Q ss_conf 487999999999999998499389985110221010049998890599999999997--05998899856777-----99
Q 000432 1357 LDPLVQYSDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTL--LKKSSILVLDEATA-----SV 1429 (1513)
Q Consensus 1357 Ldp~~~~sdeei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARAL--Lr~~~ILiLDEaTs-----sl 1429 (1513)
+..-.+.++...+.++...+...-...+-+........ .++...+.. -.+++++++|=-+. .-
T Consensus 96 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vvID~l~~l~~~~~~ 165 (277)
T d1cr2a_ 96 --------DSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETD--RLLAKLAYMRSGLGCDVIILDHISIVVSASGE 165 (277)
T ss_dssp --------HHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHH--HHHHHHHHHHHTTCCSEEEEEEEEC-------
T ss_pred --------CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH--HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC
T ss_conf --------12222214567788898874035214662143310689--99998654321367625997054212034654
Q ss_pred CH--HHHHHHHHHHHHHC--CCCEEEEECCCHH----------------HH-------HHCCEEEEEECC
Q ss_conf 99--87999999999855--9938998615913----------------57-------521979999498
Q 000432 1430 DS--ATDGVIQKIISQEF--KDRTVVTIAHRIH----------------TV-------IDSDLVLVLSDG 1472 (1513)
Q Consensus 1430 D~--~Td~~Iq~~ir~~f--~~~TvI~IAHRl~----------------ti-------~~~DrIlVL~~G 1472 (1513)
+. +.-..+.+.+++.. .+|+|++++|=-. .+ ..+|.++.+..-
T Consensus 166 ~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r~ 235 (277)
T d1cr2a_ 166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (277)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEEC
T ss_conf 4306778999999999765016552031035632244455433332112123430015038699999846
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=95.66 E-value=0.053 Score=28.21 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=19.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
-++|+|++|+|||||..+|+..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~ 25 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYK 25 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999948898099999999997
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.60 E-value=0.034 Score=29.67 Aligned_cols=25 Identities=48% Similarity=0.648 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8929999869999898999999505
Q 000432 1288 GRKKVGVVGRTGSGKSTLIQAIFRI 1312 (1513)
Q Consensus 1288 ~GekvgIVGrTGSGKSTL~~~L~rl 1312 (1513)
.+=||||+|++|+|||||+++|++-
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8888999999999999999999778
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.58 E-value=0.0058 Score=35.76 Aligned_cols=29 Identities=38% Similarity=0.587 Sum_probs=24.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 99999258974999999981695687738
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQKMAGT 690 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~~~~G~ 690 (1513)
.+||+|++|+|||||+++|+|.-....|.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~ 86 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEGA 86 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 79998999997899999995888677756
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.52 E-value=0.0048 Score=36.38 Aligned_cols=39 Identities=36% Similarity=0.440 Sum_probs=31.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 962892999986999989899999950578997489993
Q 000432 1285 TFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIID 1323 (1513)
Q Consensus 1285 ~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~ID 1323 (1513)
-++.|..+-|+|+|||||||++++|++.+++..=-|.|-
T Consensus 162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE 200 (323)
T d1g6oa_ 162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 200 (323)
T ss_dssp HHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEECC
T ss_conf 998378889994035662578999865301456233113
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.51 E-value=0.0067 Score=35.24 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=28.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8929999869999898999999505789974899
Q 000432 1288 GRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSII 1321 (1513)
Q Consensus 1288 ~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~ 1321 (1513)
+|+...++|.||.|||||+++|.+-.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.41 E-value=0.0025 Score=38.66 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=26.5
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 783999992589749999999816956877389
Q 000432 659 RGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691 (1513)
Q Consensus 659 ~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I 691 (1513)
+|+.++++|+||.|||||+++|+|+.....|.|
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~v 128 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI 128 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCC
T ss_conf 356499987787348789875151767640355
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.18 E-value=0.0066 Score=35.29 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=21.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99999258974999999981695
Q 000432 662 KVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
.++++|.+|+|||||+++|+|+-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.15 E-value=0.0062 Score=35.51 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=21.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99999258974999999981695
Q 000432 662 KVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
.++|+|++|+|||||+++|.|+=
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.06 E-value=0.08 Score=26.79 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=24.1
Q ss_pred CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 52001158962892999986999989899999950
Q 000432 1277 SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1277 ~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~r 1311 (1513)
.++.| +.||+.+-|.|++|+|||||+..|.-
T Consensus 21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EEETT----EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHCC----CCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 98689----55895899992899989999999999
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.04 E-value=0.0049 Score=36.31 Aligned_cols=27 Identities=30% Similarity=0.593 Sum_probs=23.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 839999925897499999998169568
Q 000432 660 GMKVAICGTVGSGKSSLLSCILGEIQK 686 (1513)
Q Consensus 660 G~~vaIvG~sGSGKSTLl~~llGe~~~ 686 (1513)
|++++|+||+|||||||.+.|..+++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.031 Score=30.04 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=35.2
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf 17839999925897499999998169568773899979489992787666764789870499999147999
Q 000432 658 KRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDR 728 (1513)
Q Consensus 658 ~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~~ayv~Q~~wi~~gTIreNIlfG~~~d~~~y~~ 728 (1513)
..+.++.++|++||||||+.+.|...+.. ..+ ...++...........+.++..+....
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~----~~~--------~~d~~~~~~~~~~~~~~~~~~~~~~~~ 62 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLHA----AFL--------DGDFLHPRRNIEKMASGEPLNDDDRKP 62 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTC----EEE--------EGGGGCCHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCC----CEE--------CHHHHHHHHHHHHHCCCCCEEHHHHHH
T ss_conf 98718999899998989999999998697----831--------036645998853002476300113477
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.93 E-value=0.056 Score=28.02 Aligned_cols=28 Identities=36% Similarity=0.485 Sum_probs=23.3
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 1783999992589749999999816956
Q 000432 658 KRGMKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 658 ~~G~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
+...-+.+.||.|||||++.++|..++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 43 KIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 9888678668998882289999999829
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.92 E-value=0.0063 Score=35.47 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=20.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999258974999999981695687
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQKM 687 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~~~ 687 (1513)
.++|+|++|||||||++.|+.++...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.92 E-value=0.083 Score=26.68 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.6
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 999925897499999998169568
Q 000432 663 VAICGTVGSGKSSLLSCILGEIQK 686 (1513)
Q Consensus 663 vaIvG~sGSGKSTLl~~llGe~~~ 686 (1513)
+.++||.|+||||+..+++.++..
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l~~ 59 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESIFG 59 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 998899999889999999976227
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.90 E-value=0.0077 Score=34.78 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=24.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 783999992589749999999816956
Q 000432 659 RGMKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 659 ~G~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
.|++++++|++||||||+.+.|...+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.77 E-value=0.076 Score=26.98 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=21.2
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 17839999925897499999998169
Q 000432 658 KRGMKVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 658 ~~G~~vaIvG~sGSGKSTLl~~llGe 683 (1513)
++-+++.++|..||||||+.+.++..
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99989999899999899999999976
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.75 E-value=0.094 Score=26.22 Aligned_cols=88 Identities=20% Similarity=0.178 Sum_probs=51.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHCCCCCCCCCHH
Q ss_conf 28929999869999898999999505789974899938527999957762000887477754667675504879999999
Q 000432 1287 PGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDK 1366 (1513)
Q Consensus 1287 ~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~~~~sde 1366 (1513)
+.-+-|-++|..||||||+++.++.- .|.+.|+. ++++ +-+
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~--------D~~~---------------------------~~~ 52 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNR--------DTLG---------------------------SWQ 52 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEH--------HHHC---------------------------SHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEECH--------HHHH---------------------------HHH
T ss_conf 99989999899999899999999976----59789760--------7777---------------------------888
Q ss_pred HHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf 9999999849938998511022101004999889059999-99999970599889985
Q 000432 1367 QVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQL-FCLGRTLLKKSSILVLD 1423 (1513)
Q Consensus 1367 ei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQl-l~LARALLr~~~ILiLD 1423 (1513)
++.+.++. .+..|.+..+. +.|++..+|+. +++||..=-+..++.+|
T Consensus 53 ~~~~~~~~--------~l~~g~~vIiD--~t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 53 RCVSSCQA--------ALRQGKRVVID--NTNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp HHHHHHHH--------HHHTTCCEEEE--SCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHHHHHH--------HHHCCCCCEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99999999--------99779995551--76799999999999998558887999948
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.64 E-value=0.013 Score=32.89 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=24.5
Q ss_pred EECCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 71783999992589749999999816956
Q 000432 657 VKRGMKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 657 i~~G~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
=++|..+-++|.+||||||+.+.|...+.
T Consensus 21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~ 49 (208)
T d1m7ga_ 21 NQRGLTIWLTGLSASGKSTLAVELEHQLV 49 (208)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 89986999989999998999999998877
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.49 E-value=0.0077 Score=34.78 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 929999869999898999999505789
Q 000432 1289 RKKVGVVGRTGSGKSTLIQAIFRIVEP 1315 (1513)
Q Consensus 1289 GekvgIVGrTGSGKSTL~~~L~rl~~p 1315 (1513)
|..+.|+||+|||||||++.|..-++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.41 E-value=0.029 Score=30.26 Aligned_cols=46 Identities=13% Similarity=0.286 Sum_probs=32.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCH
Q ss_conf 99999258974999999981695687738999794899927876667647
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNI 711 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~~ayv~Q~~wi~~gTI 711 (1513)
+++|.|++||||||+.+.|...+....+. -.+..++++.+......
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~----~~v~~Is~D~F~~~~~~ 127 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH----RRVELITTDGFLHPNQV 127 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC----CCEEEEEGGGGBCCHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCC----CCEEEEEEEEEECCCHH
T ss_conf 99996899998768999999997304689----96599952156898458
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.36 E-value=0.11 Score=25.57 Aligned_cols=151 Identities=17% Similarity=0.119 Sum_probs=68.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCC-CCC-CEEEEC-CEEEEECCCCCCCCCCHHH------HHCCCCCCCCHHHHHHHHH
Q ss_conf 999992589749999999816956-877-389997-9489992787666764789------8704999991479999999
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQ-KMA-GTVKIS-GTKAYVPQSPWILTGNIRE------NILFGNQYDSCKYDRTVEA 732 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~-~~~-G~I~i~-g~~ayv~Q~~wi~~gTIre------NIlfG~~~d~~~y~~vi~a 732 (1513)
.++|||..+||||||+++|+|+=- |.+ |..+-. -.+-|-. ++....+.-.. ..-.....+.+.....+..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 104 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTH-LPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIR 104 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEE-CCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEC-CCCCCCCCCHHHHHHHHHCCCCEECCHHHHHHHHHH
T ss_conf 5999818989799999999689978878975406888999945-776667653065667762688622378999999999
Q ss_pred HHC---------HHHHHHC----C-CCCCCCCCCCCCCCCH-------HHHHHHHHHHHHHCCCC--EEEEECCCCCCCH
Q ss_conf 820---------7788432----2-8997301379987774-------79999999998702997--8986076778897
Q 000432 733 CAL---------VKDFELF----A-SGDLTEIGERGINMSG-------GQKQRIQIARAVYQDAD--IYLLDDPFSAVDA 789 (1513)
Q Consensus 733 c~L---------~~dl~~l----p-~Gd~T~IGE~G~nLSG-------GQkQRIaLARAly~~ad--I~lLDDp~SAlD~ 789 (1513)
..- ..+.... | ....+.|.--|.+-+. .+.+.-.+++...++++ |+...+.......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~ 184 (306)
T d1jwyb_ 105 DTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLAN 184 (306)
T ss_dssp HCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTT
T ss_pred HHHHHCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 99874277776566506998247898880686588864436688403589999999999982777516876325631003
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 77999999998342099379998059
Q 000432 790 HTGTQLFKDCLMGILKDKSVLYVTHQ 815 (1513)
Q Consensus 790 ~t~~~i~~~~i~~~l~~kTvIlVTH~ 815 (1513)
.....+.++ +.+ ...+|++++|+-
T Consensus 185 ~~~~~~~~~-~~~-~~~r~i~Vitk~ 208 (306)
T d1jwyb_ 185 SDALQLAKE-VDP-EGKRTIGVITKL 208 (306)
T ss_dssp CSHHHHHHH-HCS-SCSSEEEEEECT
T ss_pred CHHHHHHHH-HCC-CCCEEEEEEECC
T ss_conf 499999997-386-788589998204
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.36 E-value=0.02 Score=31.46 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=27.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8929999869999898999999505789974899938
Q 000432 1288 GRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN 1324 (1513)
Q Consensus 1288 ~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDG 1324 (1513)
+|+-|.|+|++||||||+.+.|.+-+.. --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.31 E-value=0.016 Score=32.31 Aligned_cols=77 Identities=4% Similarity=0.007 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH-HHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEE
Q ss_conf 905999999999970599889985677799998799-99999998559938998615913575219799994988967
Q 000432 1400 SVGQRQLFCLGRTLLKKSSILVLDEATASVDSATDG-VIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAE 1476 (1513)
Q Consensus 1400 S~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~-~Iq~~ir~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE 1476 (1513)
...+......+...++++.+++++=.-..-+...+. .+.+.++....++.++++........+....--...-.+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~~~~~~~ 141 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIR 141 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 520247899999998741332011025654203455544455542014101020465444335588798727996799
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.29 E-value=0.017 Score=32.10 Aligned_cols=32 Identities=31% Similarity=0.337 Sum_probs=23.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 29999869999898999999505789974899938
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN 1324 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDG 1324 (1513)
+-|.|+|.+||||||+++.|.+-. .|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEECH
T ss_conf 799998999999999999999957---99799603
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.29 E-value=0.016 Score=32.25 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999898999999505
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRI 1312 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl 1312 (1513)
+|+|+|++|+|||||+++|++.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.26 E-value=0.013 Score=32.98 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=25.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 7839999925897499999998169568
Q 000432 659 RGMKVAICGTVGSGKSSLLSCILGEIQK 686 (1513)
Q Consensus 659 ~G~~vaIvG~sGSGKSTLl~~llGe~~~ 686 (1513)
.|.++.|+|||||||+||.+.|+-..+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~ 28 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPL 28 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9809999999999999999999863986
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.20 E-value=0.025 Score=30.73 Aligned_cols=42 Identities=12% Similarity=0.267 Sum_probs=21.3
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 70299789860767788977799999999834209937999805989
Q 000432 771 VYQDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQVE 817 (1513)
Q Consensus 771 ly~~adI~lLDDp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~ 817 (1513)
-..+.|++|+|-.. .. .+....+.+. +.. .+|-+++|-+..+
T Consensus 132 ~~~~~d~~l~~~~~-~~-~~~d~~l~~~-l~~--~~k~~~~V~nK~D 173 (400)
T d1tq4a_ 132 KFYEYDFFIIISAT-RF-KKNDIDIAKA-ISM--MKKEFYFVRTKVD 173 (400)
T ss_dssp TGGGCSEEEEEESS-CC-CHHHHHHHHH-HHH--TTCEEEEEECCHH
T ss_pred HHHCCEEEEEECCC-CC-CHHHHHHHHH-HHH--CCCCEEEEEECCC
T ss_conf 33226599996588-88-7889999999-997--6998799970863
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.15 E-value=0.013 Score=33.00 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=17.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999258974999999981695687
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQKM 687 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~~~ 687 (1513)
.++|+|.+|||||||+..|+.++...
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 99998099998999999999999867
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.09 E-value=0.016 Score=32.34 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99999258974999999981695
Q 000432 662 KVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
.++++|++|+|||||+++|.|+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.05 E-value=0.038 Score=29.31 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=23.7
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 971783999992589749999999816
Q 000432 656 KVKRGMKVAICGTVGSGKSSLLSCILG 682 (1513)
Q Consensus 656 ~i~~G~~vaIvG~sGSGKSTLl~~llG 682 (1513)
-+++|+.+.|.|++|||||+|..-++-
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 955887999985898988999999999
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.04 E-value=0.013 Score=32.93 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=24.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCC
Q ss_conf 78399999258974999999981695687
Q 000432 659 RGMKVAICGTVGSGKSSLLSCILGEIQKM 687 (1513)
Q Consensus 659 ~G~~vaIvG~sGSGKSTLl~~llGe~~~~ 687 (1513)
+.-.++|+|+.|+|||||+..+.+.+...
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~ 81 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIRE 81 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 83289743899998999999999999756
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=93.93 E-value=0.012 Score=33.20 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=24.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99998699998989999995057899748999
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIVEPTMGSIII 1322 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~I 1322 (1513)
.++|+|.+|||||||++.|.+-+...+-++.+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v 35 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGL 35 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 89999189998999999999999977976877
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.89 E-value=0.017 Score=32.00 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=20.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 9999925897499999998169568
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQK 686 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~~ 686 (1513)
+++|.|++|||||||.+.|.-.+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.89 E-value=0.02 Score=31.51 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=28.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCC
Q ss_conf 9999925897499999998169568773899979489992787666
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWIL 707 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~~ayv~Q~~wi~ 707 (1513)
.+||.|++||||||+.+.|...+....... ..-.+..++|+.|-.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~~-~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVDY-RQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSCG-GGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCCCC-CCCCEEEEECCCCCC
T ss_conf 999989997879999999999964101345-788439993465322
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.87 E-value=0.013 Score=33.07 Aligned_cols=22 Identities=36% Similarity=0.521 Sum_probs=19.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
-|||+|++++|||||+++|.|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.84 E-value=0.14 Score=24.84 Aligned_cols=148 Identities=13% Similarity=0.110 Sum_probs=69.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHCCCCCCCC
Q ss_conf 96289299998699998989999995057-89974899938527999957762000887477754667675504879999
Q 000432 1285 TFPGRKKVGVVGRTGSGKSTLIQAIFRIV-EPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQY 1363 (1513)
Q Consensus 1285 ~i~~GekvgIVGrTGSGKSTL~~~L~rl~-~p~~G~I~IDGvdI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~~~~ 1363 (1513)
-+++|.-+-|.|++|+|||+++.-+..-. ....-.+.++- +.+...+
T Consensus 22 Gi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~----e~~~~~~---------------------------- 69 (242)
T d1tf7a2 22 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY----EESRAQL---------------------------- 69 (242)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES----SSCHHHH----------------------------
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEC----CCCHHHH----------------------------
T ss_conf 98698499999189999999999999999872324411212----6799999----------------------------
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 999999999984993899851102210100499988905999999999970-5998899856777999987999999999
Q 000432 1364 SDKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLL-KKSSILVLDEATASVDSATDGVIQKIIS 1442 (1513)
Q Consensus 1364 sdeei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARALL-r~~~ILiLDEaTsslD~~Td~~Iq~~ir 1442 (1513)
.+-++..+....- ....+....+........ .+..+-.+.+++- .++++++.|-.++.....++..+.+.++
T Consensus 70 -----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~ 142 (242)
T d1tf7a2 70 -----LRNAYSWGMDFEE-MERQNLLKIVCAYPESAG-LEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVI 142 (242)
T ss_dssp -----HHHHHTTSCCHHH-HHHTTSEEECCCCGGGSC-HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHH
T ss_pred -----HHHHHHCCCCHHH-HHHCCCEEEEEEECCHHH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHH
T ss_conf -----9999982998699-854586179973000101-799999999999840885332204314304899999999999
Q ss_pred ---HH--CCCCEEEEECCCHH----------HHH-HCCEEEEEEC
Q ss_conf ---85--59938998615913----------575-2197999949
Q 000432 1443 ---QE--FKDRTVVTIAHRIH----------TVI-DSDLVLVLSD 1471 (1513)
Q Consensus 1443 ---~~--f~~~TvI~IAHRl~----------ti~-~~DrIlVL~~ 1471 (1513)
.. -.++|++.++|.-. .+. .+|-|+.|+.
T Consensus 143 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 143 GVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp HHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 999999986983999985675125544577640464216999998
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.83 E-value=0.023 Score=31.00 Aligned_cols=23 Identities=48% Similarity=0.592 Sum_probs=21.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99999258974999999981695
Q 000432 662 KVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
.|+++|.+|+|||||++.++|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.76 E-value=0.025 Score=30.80 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 999992589749999999816956
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
.|+++|++|+|||||++.|+|...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.75 E-value=0.024 Score=30.90 Aligned_cols=22 Identities=45% Similarity=0.681 Sum_probs=19.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
.|+++|.+|+|||||+++|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.71 E-value=0.0014 Score=40.59 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=27.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 399999258974999999981695687738999
Q 000432 661 MKVAICGTVGSGKSSLLSCILGEIQKMAGTVKI 693 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i 693 (1513)
+.+.|+|+.|+|||||++.+..++....+.+.+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~ 34 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 699998899971999999999999977997999
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.71 E-value=0.027 Score=30.54 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699998989999995057
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
+|.++|+||+|||||+++|+|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.60 E-value=0.0073 Score=34.96 Aligned_cols=54 Identities=26% Similarity=0.210 Sum_probs=36.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCC
Q ss_conf 8929999869999898999999505789974899938527999957762000887477
Q 000432 1288 GRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQD 1345 (1513)
Q Consensus 1288 ~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i~iIpQd 1345 (1513)
+|....++|.||.|||||+++|.+-.....|.|.-.. .-|.|.-|.+--+-+..
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~----~rGrHTTt~~~l~~~~g 149 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHL----GRGKHTTRHVELIHTSG 149 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------------------CCCCCEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCCC----CCCCEEEEEEEEEECCC
T ss_conf 3564999877873487898751517676403555335----89712443478886279
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.59 E-value=0.16 Score=24.52 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 999992589749999999816956
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
-+.+.||.|+|||++.+++.+++.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.58 E-value=0.014 Score=32.63 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.7
Q ss_pred EEEEECCCCCHHHHHHHHHCCC
Q ss_conf 9999258974999999981695
Q 000432 663 VAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 663 vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
||++|.+|+|||||++.|.|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.58 E-value=0.028 Score=30.33 Aligned_cols=28 Identities=36% Similarity=0.688 Sum_probs=24.6
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 1783999992589749999999816956
Q 000432 658 KRGMKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 658 ~~G~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
|+|..++|.|++||||||+.+.|...+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.58 E-value=0.026 Score=30.57 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999986999989899999950578
Q 000432 1288 GRKKVGVVGRTGSGKSTLIQAIFRIVE 1314 (1513)
Q Consensus 1288 ~GekvgIVGrTGSGKSTL~~~L~rl~~ 1314 (1513)
.|.-+-|+|||||||+||.+.|+.-.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.56 E-value=0.027 Score=30.44 Aligned_cols=28 Identities=18% Similarity=0.436 Sum_probs=23.7
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 1783999992589749999999816956
Q 000432 658 KRGMKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 658 ~~G~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
++|..+.++|.+||||||+.++|...+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.54 E-value=0.031 Score=30.04 Aligned_cols=28 Identities=21% Similarity=0.469 Sum_probs=25.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2892999986999989899999950578
Q 000432 1287 PGRKKVGVVGRTGSGKSTLIQAIFRIVE 1314 (1513)
Q Consensus 1287 ~~GekvgIVGrTGSGKSTL~~~L~rl~~ 1314 (1513)
|+|-+|.|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.49 E-value=0.02 Score=31.60 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=41.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHH--CCC-CC---CCCC
Q ss_conf 99998699998989999995057899748999385279999577620008874777546676755--048-79---9999
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRG--NLD-PL---VQYS 1364 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i~iIpQdp~LF~GTIR~--NLd-p~---~~~s 1364 (1513)
.|||.|.+||||||+.+.|-.++.-..+ ..++.+|++|.+..+...++ ++. .. +.++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l~~~~~~~~~g~Pes~D 144 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVLKERGLMKKKGFPESYD 144 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBC
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----------------CCCEEEEEEEEEECCCHHHHHHCCCCCCCCHHHHH
T ss_conf 9999689999876899999999730468-----------------99659995215689845888836876688167631
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999984
Q 000432 1365 DKQVWEALDKC 1375 (1513)
Q Consensus 1365 deei~~aL~~~ 1375 (1513)
-+.+.+.|...
T Consensus 145 ~~~L~~~L~~l 155 (308)
T d1sq5a_ 145 MHRLVKFVSDL 155 (308)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.46 E-value=0.022 Score=31.22 Aligned_cols=42 Identities=31% Similarity=0.486 Sum_probs=34.2
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCC
Q ss_conf 971783999992589749999999816956877389997948999278
Q 000432 656 KVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQS 703 (1513)
Q Consensus 656 ~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~~ayv~Q~ 703 (1513)
-++.|..+-|.|+.|||||+|...+.....+..| .++|+.-+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~------~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGG------TCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC------CEEEEESS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC------EEEEEECC
T ss_conf 8667547898058765227999999999970799------89999887
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.44 E-value=0.023 Score=31.07 Aligned_cols=24 Identities=38% Similarity=0.408 Sum_probs=21.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 399999258974999999981695
Q 000432 661 MKVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
+.++|+|++|||||||.++|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.42 E-value=0.04 Score=29.15 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 3999992589749999999816956
Q 000432 661 MKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
+++.|+|++||||||+.+.|...+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.42 E-value=0.017 Score=31.99 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=23.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 999986999989899999950578997
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIVEPTM 1317 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~~p~~ 1317 (1513)
.+||+|.+|||||||+..|.+.+...+
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g 29 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREG 29 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 999980999989999999999998679
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.40 E-value=0.029 Score=30.25 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999898999999505789
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIVEP 1315 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~~p 1315 (1513)
.|||.|++|||||||++.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.39 E-value=0.17 Score=24.29 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=62.6
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 97178399999258974999999981695687738999794899927876667647898704999991479999999820
Q 000432 656 KVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACAL 735 (1513)
Q Consensus 656 ~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~~ayv~Q~~wi~~gTIreNIlfG~~~d~~~y~~vi~ac~L 735 (1513)
.+++..-+.+.||.|+|||+|.+++.+++... .-++.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~---------~~~~~---------------------------------- 73 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQAN---------FISIK---------------------------------- 73 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCE---------EEEEC----------------------------------
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC---------EEEEE----------------------------------
T ss_conf 99988757887899876304778878771894---------79988----------------------------------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH---------HHHHHHHHHH---HHH
Q ss_conf 7788432289973013799877747999999999870299789860767788977---------7999999998---342
Q 000432 736 VKDFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAH---------TGTQLFKDCL---MGI 803 (1513)
Q Consensus 736 ~~dl~~lp~Gd~T~IGE~G~nLSGGQkQRIaLARAly~~adI~lLDDp~SAlD~~---------t~~~i~~~~i---~~~ 803 (1513)
..++.. +..| ...++-|-.+.+|--..|-|+++||.-+..... ..+++....+ .+.
T Consensus 74 ~~~l~~------~~~~------~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 141 (265)
T d1r7ra3 74 GPELLT------MWFG------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 141 (265)
T ss_dssp HHHHHT------SCTT------THHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC--
T ss_pred HHHHHH------CCCC------CHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 799525------3165------1589999999999863984356875463245578767887379999999999996286
Q ss_pred CC--CCEEEEECCCCCCCCC
Q ss_conf 09--9379998059896123
Q 000432 804 LK--DKSVLYVTHQVEFLPA 821 (1513)
Q Consensus 804 l~--~kTvIlVTH~l~~l~~ 821 (1513)
.. +--+|..||+++.++.
T Consensus 142 ~~~~~v~vi~ttn~~~~ld~ 161 (265)
T d1r7ra3 142 STKKNVFIIGATNRPDIIDP 161 (265)
T ss_dssp ----CCEEEECCBSCTTTSC
T ss_pred CCCCCEEEEEECCCCHHCCH
T ss_conf 77799899991799222799
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.33 E-value=0.013 Score=33.03 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=18.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 8399999258974999999981695
Q 000432 660 GMKVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 660 G~~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
.-.++++|.+++|||||+++|.|.-
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.23 E-value=0.18 Score=24.11 Aligned_cols=30 Identities=30% Similarity=0.329 Sum_probs=24.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 962892999986999989899999950578
Q 000432 1285 TFPGRKKVGVVGRTGSGKSTLIQAIFRIVE 1314 (1513)
Q Consensus 1285 ~i~~GekvgIVGrTGSGKSTL~~~L~rl~~ 1314 (1513)
.+++..-+-+.|+.|+|||+|++++.+...
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999887578878998763047788787718
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.08 E-value=0.041 Score=29.08 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=30.0
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 97178399999258974999999981695687738
Q 000432 656 KVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGT 690 (1513)
Q Consensus 656 ~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~ 690 (1513)
-+++|..+.+.|++|||||||+.-+.....+..|.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~ 84 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT 84 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 96673589980577747899999999998708987
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.07 E-value=0.099 Score=26.05 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=19.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+++++|..|+|||||++.+++.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.97 E-value=0.19 Score=23.83 Aligned_cols=30 Identities=33% Similarity=0.269 Sum_probs=24.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 962892999986999989899999950578
Q 000432 1285 TFPGRKKVGVVGRTGSGKSTLIQAIFRIVE 1314 (1513)
Q Consensus 1285 ~i~~GekvgIVGrTGSGKSTL~~~L~rl~~ 1314 (1513)
.+++...+-+.||.|+|||++++++.+.+.
T Consensus 41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 999888678668998882289999999829
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.92 E-value=0.037 Score=29.44 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
.+||+|.+.+|||||+++|+|.
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999907787099999999974
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.86 E-value=0.03 Score=30.18 Aligned_cols=26 Identities=12% Similarity=0.322 Sum_probs=20.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 83999992589749999999816956
Q 000432 660 GMKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 660 G~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
.+.+.|+||||+||+||.+.|+.+.+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=92.84 E-value=0.054 Score=28.13 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99999258974999999981695
Q 000432 662 KVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
.++|+|+.|||||||++.|+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.83 E-value=0.038 Score=29.31 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=24.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2892999986999989899999950578
Q 000432 1287 PGRKKVGVVGRTGSGKSTLIQAIFRIVE 1314 (1513)
Q Consensus 1287 ~~GekvgIVGrTGSGKSTL~~~L~rl~~ 1314 (1513)
+.|..|.++|.+||||||+.++|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.80 E-value=0.033 Score=29.85 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998699998989999995057
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
.+|+|.|++|||||||++.|..-+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.70 E-value=0.03 Score=30.08 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=23.5
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 1783999992589749999999816956
Q 000432 658 KRGMKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 658 ~~G~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
++.-+++++|+.|+|||||++.+.+...
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7777899999999898999999967887
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.60 E-value=0.045 Score=28.77 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 399999258974999999981695
Q 000432 661 MKVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
=++++||.+|+|||||++.+.+.-
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 299999999989999999996798
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.60 E-value=0.048 Score=28.56 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 9999925897499999998169568
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQK 686 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~~ 686 (1513)
.+.++||.|+||||+++++..++..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~~ 71 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELFG 71 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 6999789997487999999999873
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=92.55 E-value=0.047 Score=28.61 Aligned_cols=24 Identities=46% Similarity=0.538 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999989899999950578
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIVE 1314 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~~ 1314 (1513)
.|+|+|+.|||||||++.|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=92.55 E-value=0.047 Score=28.61 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999898999999505
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRI 1312 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl 1312 (1513)
+|+++|++|+|||||++.|++-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=92.50 E-value=0.057 Score=27.97 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=22.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 783999992589749999999816956
Q 000432 659 RGMKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 659 ~G~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
..+.+.|+|++||||||+.++|...+.
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 985999989999998999999999728
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.45 E-value=0.055 Score=28.08 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999898999999505
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRI 1312 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl 1312 (1513)
.|+|||++|+|||||+++|++-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.36 E-value=0.049 Score=28.44 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999898999999505
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRI 1312 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl 1312 (1513)
+|+++|++|+|||||++.|++-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.29 E-value=0.049 Score=28.48 Aligned_cols=45 Identities=27% Similarity=0.338 Sum_probs=30.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCC
Q ss_conf 99998699998989999995057899748999385279999577620008874777546
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLF 1349 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i~iIpQdp~LF 1349 (1513)
.|||.|++||||||+.+.|...+..... ..-.....+++||.+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~--------------~~~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEV--------------DYRQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGS--------------CGGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCC--------------CCCCCCEEEEECCCCCC
T ss_conf 9999899978799999999999641013--------------45788439993465322
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=92.21 E-value=0.043 Score=28.92 Aligned_cols=26 Identities=15% Similarity=0.400 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 92999986999989899999950578
Q 000432 1289 RKKVGVVGRTGSGKSTLIQAIFRIVE 1314 (1513)
Q Consensus 1289 GekvgIVGrTGSGKSTL~~~L~rl~~ 1314 (1513)
...|.|.|++||||||+.+.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.17 E-value=0.054 Score=28.11 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99999258974999999981695
Q 000432 662 KVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
.++|+|++|+|||||++.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.14 E-value=0.06 Score=27.75 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699998989999995057
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
+|||+|++.+|||||+++|.+.-
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=92.13 E-value=0.055 Score=28.04 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+++++|++|+|||||++.+.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=92.04 E-value=0.07 Score=27.22 Aligned_cols=27 Identities=19% Similarity=0.446 Sum_probs=23.3
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 178399999258974999999981695
Q 000432 658 KRGMKVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 658 ~~G~~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
|+|-.++++|+.||||||..+.|...+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.99 E-value=0.048 Score=28.53 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=23.3
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCC
Q ss_conf 83999992589749999999816956877
Q 000432 660 GMKVAICGTVGSGKSSLLSCILGEIQKMA 688 (1513)
Q Consensus 660 G~~vaIvG~sGSGKSTLl~~llGe~~~~~ 688 (1513)
++.++|.|+.||||||+++.|...+....
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 98899989999898999999999998769
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=91.92 E-value=0.061 Score=27.72 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=23.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 289299998699998989999995057
Q 000432 1287 PGRKKVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1287 ~~GekvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
+.+..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.90 E-value=0.061 Score=27.71 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=21.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99999258974999999981695
Q 000432 662 KVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
+++++|+.|+|||||++.+.+.-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=91.80 E-value=0.26 Score=22.79 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=19.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 783999992589749999999816956
Q 000432 659 RGMKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 659 ~G~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
++..+++||++|+||||.+.-|...+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 977999989999988999999999999
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.78 E-value=0.095 Score=26.20 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=21.1
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 78399999258974999999981695
Q 000432 659 RGMKVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 659 ~G~~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
+-..+.|+|+.||||||+.+.|...+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97289998999999899999999985
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.78 E-value=0.071 Score=27.19 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=21.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99999258974999999981695
Q 000432 662 KVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
.++|||...||||||+++|+|.=
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.78 E-value=0.26 Score=22.77 Aligned_cols=116 Identities=12% Similarity=0.148 Sum_probs=59.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHCCCCCCCCCHHHH
Q ss_conf 92999986999989899999950578997489993852799995776200088747775466767550487999999999
Q 000432 1289 RKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQV 1368 (1513)
Q Consensus 1289 GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~~~~sdeei 1368 (1513)
-..+.|+|+.||||||+...|..-+ |-+.|+.- +-+|..+ .+...-....+++-.+......|...
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~g-------dl~R~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~ 73 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAG-------DLLRAEQ---GRAGSQYGELIKNCIKEGQIVPQEIT 73 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHH-------HHHHHHH---HSTTCSCHHHHHHHHHTTCCCCHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHH-------HHHHHHH---HHCCCHHHHHHHHHHHCCCCCCCHHH
T ss_conf 7289998999999899999999985----99088535-------8999886---20101788998876400002320367
Q ss_pred HHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999998499389985110221010049998890599999999997059988998567
Q 000432 1369 WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEA 1425 (1513)
Q Consensus 1369 ~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~~ILiLDEa 1425 (1513)
...+...-.. .....-+..+-++ +-....|...+.+.+.....++.||=+
T Consensus 74 ~~~~~~~~~~----~~~~~~~~~vl~g---~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 74 LALLRNAISD----NVKANKHKFLIDG---FPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp HHHHHHHHHH----HHHTTCCEEEEET---CCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHHHHHHHHH----HHCCCCCCEEEEC---CCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 8999999886----4003777535404---313689999999861545543125798
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.76 E-value=0.068 Score=27.34 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 28929999869999898999999505
Q 000432 1287 PGRKKVGVVGRTGSGKSTLIQAIFRI 1312 (1513)
Q Consensus 1287 ~~GekvgIVGrTGSGKSTL~~~L~rl 1312 (1513)
++.-||.+||++|+|||||++.|.+-
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 77778999999998989999999678
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.74 E-value=0.12 Score=25.41 Aligned_cols=49 Identities=20% Similarity=0.178 Sum_probs=31.9
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 9717839999925897499999998169568773899979489992787
Q 000432 656 KVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSP 704 (1513)
Q Consensus 656 ~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~~ayv~Q~~ 704 (1513)
-+++|+.+.|.|++|||||+|..-++-........-..++...|+..+.
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~ 78 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 78 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 9869969999838999889999999998631243126896399994023
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=91.70 E-value=0.053 Score=28.21 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 399999258974999999981695
Q 000432 661 MKVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
..++|+|++||||||+.+.|.-.+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 979898999999899999999997
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.67 E-value=0.18 Score=24.07 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=18.9
Q ss_pred EEEEEECCCCCHHHHHHHHHC
Q ss_conf 999992589749999999816
Q 000432 662 KVAICGTVGSGKSSLLSCILG 682 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llG 682 (1513)
+++++|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.66 E-value=0.18 Score=23.99 Aligned_cols=100 Identities=24% Similarity=0.318 Sum_probs=55.6
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHC
Q ss_conf 99992589749999999816956877389997948999278766676478987049999914799999998207788432
Q 000432 663 VAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKDFELF 742 (1513)
Q Consensus 663 vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~~ayv~Q~~wi~~gTIreNIlfG~~~d~~~y~~vi~ac~L~~dl~~l 742 (1513)
+.|.|++|||||-|++++..++....- .+.|++= .+..++..++-
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~~~~------~~~~~~~--------------------~~~~~~~~~~~--------- 83 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKKRGY------RVIYSSA--------------------DDFAQAMVEHL--------- 83 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHTTC------CEEEEEH--------------------HHHHHHHHHHH---------
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCC------CEEEECH--------------------HHHHHHHHHHH---------
T ss_conf 799888998399999999987446765------0488443--------------------78799999998---------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHC-CCCEEEEECCCC
Q ss_conf 28997301379987774799999999987029978986076778-897779999999983420-993799980598
Q 000432 743 ASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSA-VDAHTGTQLFKDCLMGIL-KDKSVLYVTHQV 816 (1513)
Q Consensus 743 p~Gd~T~IGE~G~nLSGGQkQRIaLARAly~~adI~lLDDp~SA-lD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l 816 (1513)
..|+.+ -.+..|.++|++++||.=.- -+..++..+|. .+.... .++.+|+.+...
T Consensus 84 ---------------~~~~~~---~~~~~~~~~dll~iDDi~~i~~~~~~~~~lf~-lin~~~~~~~~iiits~~~ 140 (213)
T d1l8qa2 84 ---------------KKGTIN---EFRNMYKSVDLLLLDDVQFLSGKERTQIEFFH-IFNTLYLLEKQIILASDRH 140 (213)
T ss_dssp ---------------HHTCHH---HHHHHHHTCSEEEEECGGGGTTCHHHHHHHHH-HHHHHHHTTCEEEEEESSC
T ss_pred ---------------HCCCHH---HHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH-HHHHHHHCCCEEEEECCCC
T ss_conf ---------------716626---67898762130101126550586577889999-9998763166389954875
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.62 E-value=0.044 Score=28.84 Aligned_cols=31 Identities=26% Similarity=0.176 Sum_probs=24.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 2999986999989899999950578997489
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFRIVEPTMGSI 1320 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I 1320 (1513)
..|+|.|..||||||+++.|...+.....++
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 8899989999898999999999998769986
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.62 E-value=0.013 Score=32.99 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=19.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99999258974999999981695
Q 000432 662 KVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
+++++|.+|+|||||+++|.|+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=91.59 E-value=0.073 Score=27.08 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=27.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 2892999986999989899999950578997489993
Q 000432 1287 PGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIID 1323 (1513)
Q Consensus 1287 ~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~ID 1323 (1513)
|+|-++.|+|+.||||||+.+.|..-+ |-..|+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~----g~~~i~ 33 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF----CVCHLA 33 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH----TCEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf 996389998999998899999999986----985775
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.58 E-value=0.086 Score=26.53 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=25.6
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 971783999992589749999999816956
Q 000432 656 KVKRGMKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 656 ~i~~G~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
-+++|+.+.|.|++|||||+|+.-++....
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 985997999995899999999999999998
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.44 E-value=0.064 Score=27.56 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999898999999505
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRI 1312 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl 1312 (1513)
.|+|||++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.43 E-value=0.082 Score=26.68 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9299998699998989999995057
Q 000432 1289 RKKVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1289 GekvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
..-+-|+||||+||+||++.|++-.
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7719999989999999999999709
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=91.41 E-value=0.068 Score=27.35 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=25.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 29999869999898999999505789974899938
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN 1324 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDG 1324 (1513)
..|.|+|++||||||+++.|.+-+. +...++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.38 E-value=0.047 Score=28.62 Aligned_cols=25 Identities=36% Similarity=0.638 Sum_probs=20.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 9999925897499999998169568
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQK 686 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~~ 686 (1513)
.++|+||+||||+||.+.|+.+.+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.34 E-value=0.17 Score=24.19 Aligned_cols=23 Identities=39% Similarity=0.388 Sum_probs=19.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 83999992589749999999816
Q 000432 660 GMKVAICGTVGSGKSSLLSCILG 682 (1513)
Q Consensus 660 G~~vaIvG~sGSGKSTLl~~llG 682 (1513)
.-+++++|..|+|||||++.+.+
T Consensus 4 ~~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 4 SRKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 33899999899298999999971
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.33 E-value=0.2 Score=23.70 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=25.0
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 17839999925897499999998169568
Q 000432 658 KRGMKVAICGTVGSGKSSLLSCILGEIQK 686 (1513)
Q Consensus 658 ~~G~~vaIvG~sGSGKSTLl~~llGe~~~ 686 (1513)
.+|.+++|-|.-||||||+.+.|...+..
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 97689999899888699999999999971
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.15 E-value=0.038 Score=29.32 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 783999992589749999999816956
Q 000432 659 RGMKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 659 ~G~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
+|..+.++|.+||||||+.+.|...+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=91.11 E-value=0.056 Score=28.01 Aligned_cols=21 Identities=48% Similarity=0.767 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999898999999505
Q 000432 1292 VGVVGRTGSGKSTLIQAIFRI 1312 (1513)
Q Consensus 1292 vgIVGrTGSGKSTL~~~L~rl 1312 (1513)
|||+|++|+|||||++.|.+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.10 E-value=0.076 Score=26.96 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999989899999950578
Q 000432 1292 VGVVGRTGSGKSTLIQAIFRIVE 1314 (1513)
Q Consensus 1292 vgIVGrTGSGKSTL~~~L~rl~~ 1314 (1513)
|.|+|||||||+||++.|+.-.+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.03 E-value=0.078 Score=26.87 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 3999992589749999999816956
Q 000432 661 MKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
.+++++|.+||||||+.+.|...+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.03 E-value=0.097 Score=26.11 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=24.9
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 17839999925897499999998169568
Q 000432 658 KRGMKVAICGTVGSGKSSLLSCILGEIQK 686 (1513)
Q Consensus 658 ~~G~~vaIvG~sGSGKSTLl~~llGe~~~ 686 (1513)
++|.+++|.|+-||||||+.+.|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.92 E-value=0.045 Score=28.72 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999986999989899999950578
Q 000432 1288 GRKKVGVVGRTGSGKSTLIQAIFRIVE 1314 (1513)
Q Consensus 1288 ~GekvgIVGrTGSGKSTL~~~L~rl~~ 1314 (1513)
.|..|-++|.+||||||+.+.|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.86 E-value=0.064 Score=27.57 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=19.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99999258974999999981695
Q 000432 662 KVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
+++|.|+.|||||||...|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=90.86 E-value=0.17 Score=24.20 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=24.0
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 4013048971783999992589749999999816
Q 000432 649 TLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG 682 (1513)
Q Consensus 649 ~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llG 682 (1513)
.++.--+.+ .|.=+.++|++|+||||+...+..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 178999999-999999981899998999999998
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.85 E-value=0.068 Score=27.34 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 783999992589749999999816956
Q 000432 659 RGMKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 659 ~G~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
+...++|.|..||||||+++.|...+.
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 861999889999888999999998707
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=90.80 E-value=0.055 Score=28.08 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999898999999505
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRI 1312 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl 1312 (1513)
.|||+|++++|||||++.|.+-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.73 E-value=0.099 Score=26.06 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999898999999505
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRI 1312 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl 1312 (1513)
.|+|+|++|+|||||+++|.+-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.71 E-value=0.14 Score=24.98 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=25.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 96289299998699998989999995057
Q 000432 1285 TFPGRKKVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1285 ~i~~GekvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
-+++|+.+-|.|++||||||+..-+..-.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=90.57 E-value=0.069 Score=27.31 Aligned_cols=88 Identities=18% Similarity=0.223 Sum_probs=44.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-CH-HHH--HHCEEEECCCCCCCCCC--HHHCCCCCCC
Q ss_conf 929999869999898999999505789974899938527999-95-776--20008874777546676--7550487999
Q 000432 1289 RKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKI-GL-HDL--RSRLGIIPQDPTLFDGT--VRGNLDPLVQ 1362 (1513)
Q Consensus 1289 GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i-~l-~~L--R~~i~iIpQdp~LF~GT--IR~NLdp~~~ 1362 (1513)
.-.|||+|+.|||||||+..|.+.+...+-++-+=.+|.++- .- .-| |.++.-.+.+|..|-.+ -|.++... .
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~-~ 132 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA-S 132 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH-H
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC-H
T ss_conf 328974389999899999999999975698332203777610006515541367887405654101565553444420-3
Q ss_pred CCHHHHHHHHHHCCC
Q ss_conf 999999999998499
Q 000432 1363 YSDKQVWEALDKCQL 1377 (1513)
Q Consensus 1363 ~sdeei~~aL~~~~L 1377 (1513)
..-.+...+++.++.
T Consensus 133 ~~~~~~~~~~~~~g~ 147 (327)
T d2p67a1 133 QRARELMLLCEAAGY 147 (327)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 320578999886499
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.55 E-value=0.33 Score=21.92 Aligned_cols=45 Identities=7% Similarity=0.321 Sum_probs=34.0
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
Q ss_conf 5998899856777999987999999999855993899861591357
Q 000432 1415 KKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTV 1460 (1513)
Q Consensus 1415 r~~~ILiLDEaTsslD~~Td~~Iq~~ir~~f~~~TvI~IAHRl~ti 1460 (1513)
.+.+++++||+-. +..+....+.+.+.+...++..|.++++.+.+
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf 8724999424333-45431112210022135664300010211100
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=90.54 E-value=0.084 Score=26.64 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999869999898999999505
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFRI 1312 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~rl 1312 (1513)
=||.|||++|+|||||++.+.+-
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 29999999998999999999679
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=90.48 E-value=0.061 Score=27.72 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9299998699998989999995057
Q 000432 1289 RKKVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1289 GekvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
.-+|+|+|++++|||||+++|++--
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=90.47 E-value=0.15 Score=24.75 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 3999992589749999999816956
Q 000432 661 MKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
-+++++|+.|+|||||++.+.++..
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 7999999999899999999808998
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=90.44 E-value=0.074 Score=27.04 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998699998989999995057
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
-+|.|+|+.||||||+.+.|..-+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 979898999999899999999997
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.38 E-value=0.11 Score=25.84 Aligned_cols=23 Identities=39% Similarity=0.600 Sum_probs=20.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99999258974999999981695
Q 000432 662 KVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
.+||+|.+.+|||||+++|++.-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 79999699854999999998236
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=90.36 E-value=0.34 Score=21.80 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=18.9
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 178399999258974999999981695
Q 000432 658 KRGMKVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 658 ~~G~~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
++-..+++||++|+||||-+.-|.-.+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999899998999998899999999999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.36 E-value=0.12 Score=25.36 Aligned_cols=56 Identities=20% Similarity=0.336 Sum_probs=35.6
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCC--CCCCCHHHHHCCCCC
Q ss_conf 78399999258974999999981695687738999794899927876--667647898704999
Q 000432 659 RGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPW--ILTGNIRENILFGNQ 720 (1513)
Q Consensus 659 ~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~~ayv~Q~~w--i~~gTIreNIlfG~~ 720 (1513)
+|++++|-|.-||||||+++.|...+... |. ...+..++|+ -...-+++...-+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~-g~-----~~~~~~~ep~~~~~g~~i~~~~~~~~~ 58 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQL-GI-----RDMVFTREPGGTQLAEKLRSLLLDIKS 58 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHT-TC-----CCEEEEESSCSSHHHHHHHHHHHSTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHC-CC-----CEEEEECCCCCCCCHHHHHHHHHCCCC
T ss_conf 98789998998887999999999999967-99-----739983298996114455898846210
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=90.28 E-value=0.091 Score=26.35 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
||.++|++|+|||||++.|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.23 E-value=0.12 Score=25.36 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=21.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 78399999258974999999981695
Q 000432 659 RGMKVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 659 ~G~~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
+...++|+|+.||||||+.+.|...+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=90.21 E-value=0.1 Score=25.88 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=20.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 3999992589749999999816956
Q 000432 661 MKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
+.+.++|++||||||+.+.|...+.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7499989999999999999999969
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.21 E-value=0.066 Score=27.44 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=24.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 783999992589749999999816956
Q 000432 659 RGMKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 659 ~G~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
++++++|-|+.||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.20 E-value=0.3 Score=22.25 Aligned_cols=22 Identities=45% Similarity=0.659 Sum_probs=19.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+++++|..|+|||||++.+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.20 E-value=0.11 Score=25.83 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=20.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 999992589749999999816956
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
.++|+||+||||+||.+.|+.+.+
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 199999999999999999997488
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=90.16 E-value=0.11 Score=25.61 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999869999898999999505
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFRI 1312 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~rl 1312 (1513)
=||.+||+.|+|||||++.|.+-
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHCCC
T ss_conf 79999999998999999998089
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=90.06 E-value=0.11 Score=25.69 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.5
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 17839999925897499999998169
Q 000432 658 KRGMKVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 658 ~~G~~vaIvG~sGSGKSTLl~~llGe 683 (1513)
++.-+++++|..|||||||++.+.+.
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=90.00 E-value=0.13 Score=25.11 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2892999986999989899999950
Q 000432 1287 PGRKKVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1287 ~~GekvgIVGrTGSGKSTL~~~L~r 1311 (1513)
++.-||.+||+.|+|||||++.|.+
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 9857999999999898999999966
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.91 E-value=0.27 Score=22.62 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 39999925897499999998169
Q 000432 661 MKVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe 683 (1513)
-+++++|..|+|||||++.+++.
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998997899999999719
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.86 E-value=0.067 Score=27.41 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699998989999995057
Q 000432 1292 VGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1292 vgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
|.|+|||||||+||.+.|....
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.84 E-value=0.12 Score=25.32 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 059999999999705998--8998567779999879999999998559938998615
Q 000432 1401 VGQRQLFCLGRTLLKKSS--ILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAH 1455 (1513)
Q Consensus 1401 ~GQrQll~LARALLr~~~--ILiLDEaTsslD~~Td~~Iq~~ir~~f~~~TvI~IAH 1455 (1513)
..+.+-..+++..++++. |++...++.....+....+.+.+... ..+|++++++
T Consensus 152 ~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~-~~r~i~Vitk 207 (306)
T d1jwyb_ 152 DIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE-GKRTIGVITK 207 (306)
T ss_dssp CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-CSSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCC-CCEEEEEEEC
T ss_conf 5899999999999827775168763256310034999999973867-8858999820
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=89.82 E-value=0.11 Score=25.72 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=18.2
Q ss_pred CEEEEEECCCCCHHHHHHHHH
Q ss_conf 399999258974999999981
Q 000432 661 MKVAICGTVGSGKSSLLSCIL 681 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~ll 681 (1513)
-.++|+|..||||||+.+.+-
T Consensus 3 ~iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899988888788999999999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.77 E-value=0.13 Score=25.21 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=89.76 E-value=0.1 Score=25.93 Aligned_cols=21 Identities=33% Similarity=0.648 Sum_probs=18.5
Q ss_pred CEEEEEECCCCCHHHHHHHHH
Q ss_conf 399999258974999999981
Q 000432 661 MKVAICGTVGSGKSSLLSCIL 681 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~ll 681 (1513)
..++|+|.+||||||+.+.+-
T Consensus 4 ~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899998988778999999999
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.68 E-value=0.13 Score=25.04 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 39999925897499999998169
Q 000432 661 MKVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+.|+|+|+.|+|||||++.+++.
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.55 E-value=0.12 Score=25.40 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699998989999995057
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
++.+||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.55 E-value=0.14 Score=24.91 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=19.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+++++|+.|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999996989999999709
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.49 E-value=0.25 Score=22.96 Aligned_cols=26 Identities=42% Similarity=0.515 Sum_probs=23.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 39999925897499999998169568
Q 000432 661 MKVAICGTVGSGKSSLLSCILGEIQK 686 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe~~~ 686 (1513)
..+.++||.||||||+.++|.+++..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 79998897998899999999998651
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.45 E-value=0.15 Score=24.73 Aligned_cols=31 Identities=35% Similarity=0.412 Sum_probs=25.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 92999986999989899999950578997489993
Q 000432 1289 RKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIID 1323 (1513)
Q Consensus 1289 GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~ID 1323 (1513)
...|.|+|+.||||||+.+.|..-+ |-+.|+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf 9489998999998899999999997----992672
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.30 E-value=0.13 Score=25.24 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999898999999505
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRI 1312 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl 1312 (1513)
|++++|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.25 E-value=0.32 Score=22.06 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+++++|..|+|||||++.+++.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.23 E-value=0.15 Score=24.62 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=19.1
Q ss_pred EEEEEECCCCCHHHHHHHHHC
Q ss_conf 999992589749999999816
Q 000432 662 KVAICGTVGSGKSSLLSCILG 682 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llG 682 (1513)
+++++|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=89.19 E-value=0.27 Score=22.65 Aligned_cols=28 Identities=32% Similarity=0.345 Sum_probs=21.3
Q ss_pred EEEECCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 8971783999992589749999999816
Q 000432 655 LKVKRGMKVAICGTVGSGKSSLLSCILG 682 (1513)
Q Consensus 655 l~i~~G~~vaIvG~sGSGKSTLl~~llG 682 (1513)
+-.-.|.-+.++|++|+||||+...++.
T Consensus 9 ~v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 9 LVDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 9999999999980899998999999998
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.18 E-value=0.28 Score=22.52 Aligned_cols=21 Identities=38% Similarity=0.680 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
||.++|.+|+|||||++.+..
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.16 E-value=0.14 Score=24.83 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=31.3
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 9717839999925897499999998169568773899979489992787
Q 000432 656 KVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSP 704 (1513)
Q Consensus 656 ~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~~ayv~Q~~ 704 (1513)
-+++|+.+.|.|++|||||++..-++.........-.......|.....
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 81 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHH
T ss_conf 9768979999889988788999999999974443166662488740177
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=89.10 E-value=0.42 Score=21.10 Aligned_cols=99 Identities=12% Similarity=0.075 Sum_probs=47.1
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHH
Q ss_conf 78399999258974999999981695687738999794899927876667647898704999991479999999820778
Q 000432 659 RGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEACALVKD 738 (1513)
Q Consensus 659 ~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~~ayv~Q~~wi~~gTIreNIlfG~~~d~~~y~~vi~ac~L~~d 738 (1513)
+...+++|||+|+||||.+.-|.-.+. ..| .+++.+.=+.+ |.-.+ + +|...
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g-----~kV~lit~Dt~-------------------R~ga~-e--QL~~~ 62 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK-KKG-----FKVGLVGADVY-------------------RPAAL-E--QLQQL 62 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH-HTT-----CCEEEEECCCS-------------------SHHHH-H--HHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-----CCEEEEEEECC-------------------CCCHH-H--HHHHH
T ss_conf 998999989999998999999999999-779-----93699972023-------------------55156-7--89874
Q ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCCCH
Q ss_conf 8432289973013799877747999999999870299789860767-78897
Q 000432 739 FELFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPF-SAVDA 789 (1513)
Q Consensus 739 l~~lp~Gd~T~IGE~G~nLSGGQkQRIaLARAly~~adI~lLDDp~-SAlD~ 789 (1513)
-+.+ |......+....+.-- .+=++..+..++.|+++.|=|= |..|.
T Consensus 63 a~~l--~v~~~~~~~~~~~~~~--~~~a~~~~~~~~~d~IlIDTaGr~~~~~ 110 (211)
T d1j8yf2 63 GQQI--GVPVYGEPGEKDVVGI--AKRGVEKFLSEKMEIIIVDTAGRHGYGE 110 (211)
T ss_dssp HHHH--TCCEECCTTCCCHHHH--HHHHHHHHHHTTCSEEEEECCCSCCTTC
T ss_pred CCCC--CCCEEECCCCHHHHHH--HHHHHHHHHCCCCCEEEEECCCCCCCCH
T ss_conf 0146--8422302441024478--9999987402677369985377676313
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.06 E-value=0.37 Score=21.53 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=19.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+++|+|+.|+|||||++-+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.04 E-value=0.11 Score=25.76 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999986999989899999950578
Q 000432 1288 GRKKVGVVGRTGSGKSTLIQAIFRIVE 1314 (1513)
Q Consensus 1288 ~GekvgIVGrTGSGKSTL~~~L~rl~~ 1314 (1513)
++..|+|-|..||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.02 E-value=0.055 Score=28.08 Aligned_cols=43 Identities=23% Similarity=0.394 Sum_probs=33.1
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 9717839999925897499999998169568773899979489992787
Q 000432 656 KVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSP 704 (1513)
Q Consensus 656 ~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~~ayv~Q~~ 704 (1513)
-++.|..+.+.|+.|||||+++.-+........|. +.|+.-+-
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~------~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGV------AAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCE------EEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCE------EEEEECCC
T ss_conf 86663369996488748899999999987548988------99998976
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.00 E-value=0.13 Score=25.02 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999986999989899999950
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~r 1311 (1513)
..|+|+|+.|+|||||++.|.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 9899999999898999999980
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.99 E-value=0.34 Score=21.87 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.9
Q ss_pred EEEEEECCCCCHHHHHHHHHC
Q ss_conf 999992589749999999816
Q 000432 662 KVAICGTVGSGKSSLLSCILG 682 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llG 682 (1513)
+++++|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.93 E-value=0.15 Score=24.56 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 39999925897499999998169
Q 000432 661 MKVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe 683 (1513)
..+|+||...+|||||+++|-|-
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC-
T ss_pred CCEEEECCCCCCHHHHHHHHHCC
T ss_conf 91768899999899999999788
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.88 E-value=0.13 Score=25.02 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999898999999505
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRI 1312 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl 1312 (1513)
.|||+|+..+|||||+++|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=88.87 E-value=0.16 Score=24.39 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999869999898999999505
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFRI 1312 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~rl 1312 (1513)
-.|||.|..||||||+++.|-.+
T Consensus 4 ~IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 89999898877899999999987
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=88.74 E-value=0.33 Score=21.92 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=20.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 839999925897499999998169
Q 000432 660 GMKVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 660 G~~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+-+++|||-..+|||||+++|-+-
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 834888899999889999999779
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.60 E-value=0.34 Score=21.83 Aligned_cols=29 Identities=34% Similarity=0.525 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999986999989899999950-----57899748
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR-----IVEPTMGS 1319 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r-----l~~p~~G~ 1319 (1513)
||.+||..|+|||||++.+.. -++|+.|.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 40 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 8999999997999999999739988545766452
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=88.52 E-value=0.15 Score=24.72 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 39999925897499999998169
Q 000432 661 MKVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe 683 (1513)
-+++++|+.|+|||||++.+.+.
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79999999998999999999648
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.44 E-value=0.18 Score=24.02 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=18.7
Q ss_pred EEEEEECCCCCHHHHHHHHHC
Q ss_conf 999992589749999999816
Q 000432 662 KVAICGTVGSGKSSLLSCILG 682 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llG 682 (1513)
+++++|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=88.41 E-value=0.13 Score=25.03 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998699998989999995057
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
..|-++|++||||||+.+.|..-+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 749998999999999999999996
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=88.38 E-value=0.25 Score=22.91 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=26.2
Q ss_pred CCCCCEEE-EEECCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 94013048-971783999992589749999999816
Q 000432 648 PTLDGIQL-KVKRGMKVAICGTVGSGKSSLLSCILG 682 (1513)
Q Consensus 648 ~~L~~inl-~i~~G~~vaIvG~sGSGKSTLl~~llG 682 (1513)
+.|+++-- -+++|+++.|.|++|+|||+|..-++.
T Consensus 13 ~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 779885568996983999994799999999999999
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.26 E-value=0.17 Score=24.12 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
.|||.|..||||||+.+.|-.
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=88.24 E-value=0.17 Score=24.28 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=19.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99999258974999999981695
Q 000432 662 KVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
-+||+|.+.+|||||+++|+|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.16 E-value=0.18 Score=24.06 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999989899999950578
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIVE 1314 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~~ 1314 (1513)
.|.+||+.||||||+++.|.+.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.06 E-value=0.2 Score=23.70 Aligned_cols=23 Identities=43% Similarity=0.543 Sum_probs=20.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99999258974999999981695
Q 000432 662 KVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
+++++|..|+|||||++.+++.-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999909899999998299
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=88.03 E-value=0.11 Score=25.60 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 83999992589749999999816956
Q 000432 660 GMKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 660 G~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
.-.++|.|+.|+|||||+..+...+.
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 15986117998889999999999876
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=87.92 E-value=0.11 Score=25.59 Aligned_cols=41 Identities=22% Similarity=0.224 Sum_probs=30.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEC
Q ss_conf 28929999869999898999999505789--974899938527
Q 000432 1287 PGRKKVGVVGRTGSGKSTLIQAIFRIVEP--TMGSIIIDNVDI 1327 (1513)
Q Consensus 1287 ~~GekvgIVGrTGSGKSTL~~~L~rl~~p--~~G~I~IDGvdI 1327 (1513)
++|..|-+.|.+||||||+.+.|..-+.. .--.+.+||-++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 9986999989999998999999998877742750899753678
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=87.90 E-value=0.07 Score=27.23 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=30.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCC
Q ss_conf 3999992589749999999816956877389997948999278766
Q 000432 661 MKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWI 706 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~~ayv~Q~~wi 706 (1513)
-.++|+|++||||||+.+.+...+... +-+.+.++|+.+-
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~~------~v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRRE------GVKAVSIEGDAFH 44 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHH------TCCEEEEEGGGGB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC------CCCEEEEECCCCC
T ss_conf 899998999780999999999997156------9976999477787
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=87.84 E-value=0.18 Score=24.03 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998699998989999995057
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
-.|+|-|..||||||+++.|.+.+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.80 E-value=0.22 Score=23.28 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999619
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=87.79 E-value=0.22 Score=23.26 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 92999986999989899999950
Q 000432 1289 RKKVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1289 GekvgIVGrTGSGKSTL~~~L~r 1311 (1513)
.=||.+||+.|+|||||++.+.+
T Consensus 16 ~~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 16 EVRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHC
T ss_conf 77999999999899999999964
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=87.75 E-value=0.009 Score=34.23 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=27.1
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 4013048971783999992589749999999816
Q 000432 649 TLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILG 682 (1513)
Q Consensus 649 ~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llG 682 (1513)
..++.++++.+| +++|+|+.||||||++.||.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 870279974998-089988999987999999999
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=87.73 E-value=0.21 Score=23.47 Aligned_cols=20 Identities=40% Similarity=0.645 Sum_probs=18.0
Q ss_pred EEEEEECCCCCHHHHHHHHH
Q ss_conf 99999258974999999981
Q 000432 662 KVAICGTVGSGKSSLLSCIL 681 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~ll 681 (1513)
.++|+|..||||||..+.+-
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=87.68 E-value=0.0084 Score=34.49 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=31.9
Q ss_pred EEEEEEE-ECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9878999-7699895200115896289299998699998989999995057
Q 000432 1264 FHNLQIR-YAEHLPSVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1264 ~~nvs~~-Y~~~~~~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
++.++.. |+ .+++.++.+.+| .+.|+|++||||||++.+|.-.+
T Consensus 4 l~~l~l~Nf~-----~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 4 FRSLTLINWN-----GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEEEEEET-----TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEEEECCC-----CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 5699997826-----870279974998-08998899998799999999996
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=87.66 E-value=0.28 Score=22.49 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=24.0
Q ss_pred EECCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 7178399999258974999999981695
Q 000432 657 VKRGMKVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 657 i~~G~~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
+++|+++.|.|++|+|||++..-+.-..
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6288599999179999899999999999
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=87.63 E-value=0.35 Score=21.76 Aligned_cols=28 Identities=32% Similarity=0.337 Sum_probs=17.7
Q ss_pred EEEECCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 8971783999992589749999999816
Q 000432 655 LKVKRGMKVAICGTVGSGKSSLLSCILG 682 (1513)
Q Consensus 655 l~i~~G~~vaIvG~sGSGKSTLl~~llG 682 (1513)
+-.-.|.=+.++|++|+||||+...++.
T Consensus 10 ~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 10 LVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 9999999999980899999999999998
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=87.45 E-value=0.15 Score=24.55 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=19.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99999258974999999981695
Q 000432 662 KVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
.+.|.|+.||||||+.+.|.-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.36 E-value=0.19 Score=23.81 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
|+.+||.+|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=87.28 E-value=0.24 Score=23.03 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 3999992589749999999816956
Q 000432 661 MKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
-.+||-||+||||||..+.|...+.
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 5999789998798999999999969
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=87.26 E-value=0.38 Score=21.43 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=27.8
Q ss_pred CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 52001158962892999986999989899999950
Q 000432 1277 SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1277 ~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~r 1311 (1513)
..+++-.+.+ .|.-+.|.|++|+||||++..|.+
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3178999999-999999981899998999999998
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.22 E-value=0.28 Score=22.54 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=23.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 783999992589749999999816956
Q 000432 659 RGMKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 659 ~G~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
.+..+.|+|+.|+|||||+..++.+..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 598799986999829999999999779
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=87.18 E-value=0.22 Score=23.27 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=22.5
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 78399999258974999999981695
Q 000432 659 RGMKVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 659 ~G~~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
.+.+++|||...+|||||++++.+.-
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 87379997899998999999997789
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.16 E-value=0.55 Score=20.23 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=57.4
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHH-HHCHH
Q ss_conf 78399999258974999999981695687738999794899927876667647898704999991479999999-82077
Q 000432 659 RGMKVAICGTVGSGKSSLLSCILGEIQKMAGTVKISGTKAYVPQSPWILTGNIRENILFGNQYDSCKYDRTVEA-CALVK 737 (1513)
Q Consensus 659 ~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g~~ayv~Q~~wi~~gTIreNIlfG~~~d~~~y~~vi~a-c~L~~ 737 (1513)
....++|+|..|.|||||.+.+........+.- .+...+|+- ...++.+.....+.. |....
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~--f~~~~Wv~v---------------s~~~~~~~l~~~~~~~~~~~~ 105 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGIN--YDSIVWLKD---------------SGTAPKSTFDLFTDILLMLKS 105 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTT--BSEEEEEEC---------------CCCSTTHHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHC--CCEEEEEEE---------------CCCCCHHHHHHHHHHHHHHHC
T ss_conf 840899977997888999999998556554012--764899993---------------687777789999999998722
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 8843228997301379987774799999999987029-978986076778897779999999983420993799980598
Q 000432 738 DFELFASGDLTEIGERGINMSGGQKQRIQIARAVYQD-ADIYLLDDPFSAVDAHTGTQLFKDCLMGILKDKSVLYVTHQV 816 (1513)
Q Consensus 738 dl~~lp~Gd~T~IGE~G~nLSGGQkQRIaLARAly~~-adI~lLDDp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l 816 (1513)
..+ ... ... .. -.-..++|..+.+....+ .-+++|||.-+. . ++ +.+.. .+.+|+||.|-
T Consensus 106 ~~~-----~~~-~~~-~~-~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~---~---~~--~~~~~---~~srilvTTR~ 166 (277)
T d2a5yb3 106 EDD-----LLN-FPS-VE-HVTSVVLKRMICNALIDRPNTLFVFDDVVQE---E---TI--RWAQE---LRLRCLVTTRD 166 (277)
T ss_dssp TSC-----CTT-CCC-CT-TCCHHHHHHHHHHHHTTSTTEEEEEEEECCH---H---HH--HHHHH---TTCEEEEEESB
T ss_pred CHH-----HCC-CCC-CH-HHHHHHHHHHHHHHHHCCCCEEEECCHHHHH---H---HH--HHHCC---CCCEEEEEEEH
T ss_conf 022-----027-863-21-2336999999999984468816752506677---6---65--55204---57559999644
Q ss_pred CC
Q ss_conf 96
Q 000432 817 EF 818 (1513)
Q Consensus 817 ~~ 818 (1513)
..
T Consensus 167 ~~ 168 (277)
T d2a5yb3 167 VE 168 (277)
T ss_dssp GG
T ss_pred HH
T ss_conf 89
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.15 E-value=0.22 Score=23.39 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+++++|..|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=87.14 E-value=0.22 Score=23.34 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=21.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 83999992589749999999816956
Q 000432 660 GMKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 660 G~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
+.-+.++||+|+|||.|.++|.+++.
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 86699989999888899999862132
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.05 E-value=0.15 Score=24.72 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=21.7
Q ss_pred EECCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 7178399999258974999999981695
Q 000432 657 VKRGMKVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 657 i~~G~~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
++++..+.|.|+.||||||+.+.|...+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=87.04 E-value=0.25 Score=22.85 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=20.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 399999258974999999981695
Q 000432 661 MKVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
..+.|+|+.||||||+.+.|...+
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 989998899998799999999987
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.03 E-value=0.3 Score=22.24 Aligned_cols=21 Identities=43% Similarity=0.607 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
||.++|..|+|||||++.+..
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799899999999980
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.01 E-value=0.21 Score=23.42 Aligned_cols=21 Identities=33% Similarity=0.635 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
|+.+||+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.00 E-value=0.23 Score=23.14 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699998989999995057
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
.|||-|.+|||||||...|...+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.99 E-value=0.24 Score=23.10 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=21.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 999992589749999999816956
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
+++++|..|+|||||++.+.+.-.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.95 E-value=0.56 Score=20.15 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=21.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999258974999999981695687
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQKM 687 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~~~ 687 (1513)
.+.+.||.|+||+|+..++..++...
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~~~ 61 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLNCE 61 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 59888899875899999999984685
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.94 E-value=0.26 Score=22.70 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=18.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99999258974999999981695
Q 000432 662 KVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
.++|.|+.||||||..+.|...+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.93 E-value=0.21 Score=23.52 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
||.++|.+|+|||||++.+..
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.92 E-value=0.23 Score=23.23 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99999258974999999981695
Q 000432 662 KVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
+++++|..|+|||||++.+++.-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999967899999998688
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=86.90 E-value=0.25 Score=22.91 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=21.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 39999925897499999998169568
Q 000432 661 MKVAICGTVGSGKSSLLSCILGEIQK 686 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe~~~ 686 (1513)
+.+.|+|+.||||||+.+.|...+..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=86.89 E-value=0.25 Score=22.85 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+++++|+.|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=86.86 E-value=0.27 Score=22.67 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699998989999995057
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
.|||+|...+|||||+++|.+..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=86.83 E-value=0.24 Score=23.00 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999986999989899999950578
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFRIVE 1314 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~rl~~ 1314 (1513)
-+|+|-|+.||||||+.+.|..-+.
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 5999789998798999999999969
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=86.83 E-value=0.23 Score=23.22 Aligned_cols=29 Identities=28% Similarity=0.516 Sum_probs=20.3
Q ss_pred EECCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 71783999992589749999999816956
Q 000432 657 VKRGMKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 657 i~~G~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
.++|..+++.|+.||||||+.+.++..+-
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 79982999966877658899999876422
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.83 E-value=0.26 Score=22.81 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 39999925897499999998169
Q 000432 661 MKVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe 683 (1513)
=+++|+|..|+|||||++.+++.
T Consensus 6 iKivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 6 IKCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 99999999997999999999749
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=86.80 E-value=0.24 Score=23.01 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=19.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99999258974999999981695
Q 000432 662 KVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
-++++|++||||||+.+.|...+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39998999998899999999983
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.80 E-value=0.27 Score=22.69 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=19.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99999258974999999981695
Q 000432 662 KVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
.+.|+|+.||||||+.+.|...+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.80 E-value=0.31 Score=22.13 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 9999925897499999998169568
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQK 686 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~~ 686 (1513)
+++++|..|+|||||++.+.+....
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~~ 29 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHDS 29 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999998992999999999728677
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=86.76 E-value=0.2 Score=23.72 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=28.3
Q ss_pred CEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 3048971783999992589749999999816956
Q 000432 652 GIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 652 ~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
|.=+.+-+|++.+|.|+.|+|||+|+.-|..-..
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4125645787556867999887899999999775
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.73 E-value=0.26 Score=22.74 Aligned_cols=23 Identities=39% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99999258974999999981695
Q 000432 662 KVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
+++|+|..|+|||||++.+++.-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999939999999996299
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.60 E-value=0.58 Score=20.01 Aligned_cols=75 Identities=20% Similarity=0.251 Sum_probs=47.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHCCCCCCCC
Q ss_conf 96289299998699998989999995057899748-99938527999957762000887477754667675504879999
Q 000432 1285 TFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS-IIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQY 1363 (1513)
Q Consensus 1285 ~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~-I~IDGvdI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~~~~ 1363 (1513)
-++.|..+-+.|++|+||||++.-+.....-.+|. |+||.-. .++...++ ++++=| +|+-.....
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~-~~GvD~-----------d~il~~~~~ 121 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAK-KLGVDT-----------DSLLVSQPD 121 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHH-HHTCCG-----------GGCEEECCS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHHHH-HHCCCH-----------HHEEEECCC
T ss_conf 8666336999648874889999999998754898899998976--67999999-809988-----------995896699
Q ss_pred CHHHHHHHHH
Q ss_conf 9999999999
Q 000432 1364 SDKQVWEALD 1373 (1513)
Q Consensus 1364 sdeei~~aL~ 1373 (1513)
+.|++.+.++
T Consensus 122 ~~E~~~~~~~ 131 (269)
T d1mo6a1 122 TGEQALEIAD 131 (269)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
T ss_conf 8999999999
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.58 E-value=0.32 Score=22.04 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=26.0
Q ss_pred CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 52001158962892999986999989899999950
Q 000432 1277 SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1277 ~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~r 1311 (1513)
.+|.| -+++|+.+-|.|++|||||||+.-+.-
T Consensus 25 ~ll~G---Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 25 TLLGG---GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp HHHTS---SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred HHHCC---CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 63179---986996999983899988999999999
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.55 E-value=0.26 Score=22.77 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
|+.++|..|+|||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999678999999986
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.53 E-value=0.28 Score=22.53 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=19.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+++++|..|+|||||++.+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.49 E-value=0.38 Score=21.48 Aligned_cols=21 Identities=38% Similarity=0.740 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
|+.+||..|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=86.48 E-value=0.59 Score=19.97 Aligned_cols=26 Identities=15% Similarity=0.381 Sum_probs=18.7
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 83999992589749999999816956
Q 000432 660 GMKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 660 G~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
-..+++||++|+||||-+.-|.-.+.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 97999989999998999999999999
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=86.42 E-value=0.59 Score=19.94 Aligned_cols=153 Identities=16% Similarity=0.128 Sum_probs=69.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHH-HCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHCCCCCCCC
Q ss_conf 9628929999869999898999999-505789974899938527999957762000887477754667675504879999
Q 000432 1285 TFPGRKKVGVVGRTGSGKSTLIQAI-FRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQY 1363 (1513)
Q Consensus 1285 ~i~~GekvgIVGrTGSGKSTL~~~L-~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~~~~ 1363 (1513)
-+++|+.+-|.|++|+|||+++.-+ .......+..+.+... ..+...++... .-. ..
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~---e~~~~~~~~~~------------------~~~-~~ 79 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF---EETPQDIIKNA------------------RSF-GW 79 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES---SSCHHHHHHHH------------------GGG-TC
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCC---CCCHHHHHHHH------------------HHC-CC
T ss_conf 996983999994799999999999999999856887420126---67999999999------------------984-99
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHCCCC-CHHCCCCCCCCHH-HHHHHHHHHHHCC--CCCEEEEECCCCCCCH----HHH-
Q ss_conf 99999999998499389985110221-0100499988905-9999999999705--9988998567779999----879-
Q 000432 1364 SDKQVWEALDKCQLGDLVRAKEEKLD-STVAENGENWSVG-QRQLFCLGRTLLK--KSSILVLDEATASVDS----ATD- 1434 (1513)
Q Consensus 1364 sdeei~~aL~~~~L~~~v~~lp~gLd-t~V~e~G~nLS~G-QrQll~LARALLr--~~~ILiLDEaTsslD~----~Td- 1434 (1513)
..++..+ .-.. ...+ ....+.-..++.. ...++.-.+..++ +++++++|--++-.+. ...
T Consensus 80 ~~~~~~~---~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~~ 148 (242)
T d1tf7a1 80 DLAKLVD---EGKL--------FILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVR 148 (242)
T ss_dssp CHHHHHH---TTSE--------EEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHH
T ss_pred CHHHHHH---HCCH--------HHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 8489887---1430--------2444210335444430245899999999998863122200207889987605726789
Q ss_pred HHHHHHHHHH-CCCCEEEEECCCHHH---------HH-HCCEEEEEE
Q ss_conf 9999999985-599389986159135---------75-219799994
Q 000432 1435 GVIQKIISQE-FKDRTVVTIAHRIHT---------VI-DSDLVLVLS 1470 (1513)
Q Consensus 1435 ~~Iq~~ir~~-f~~~TvI~IAHRl~t---------i~-~~DrIlVL~ 1470 (1513)
..+...++.. ..+||++.++|.... .. .+|.++.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 149 RELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 99999999998639716884210255422246762335362999988
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.38 E-value=0.29 Score=22.43 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=20.0
Q ss_pred EEEEEECCCCCHHHHHHHHH-CCCC
Q ss_conf 99999258974999999981-6956
Q 000432 662 KVAICGTVGSGKSSLLSCIL-GEIQ 685 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~ll-Ge~~ 685 (1513)
+++++|..|+|||||++.+. ++.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~~~~ 28 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAGRFP 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999999992989999999739998
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.37 E-value=0.23 Score=23.21 Aligned_cols=21 Identities=43% Similarity=0.699 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
|+.+||..|+|||||++.+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.34 E-value=0.4 Score=21.31 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999989899999950578
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIVE 1314 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~~ 1314 (1513)
||.++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.30 E-value=0.32 Score=22.09 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
||.+||..|+|||||++.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=86.30 E-value=0.28 Score=22.54 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=29.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECC----EEEEECCCC
Q ss_conf 9999925897499999998169568773899979----489992787
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQKMAGTVKISG----TKAYVPQSP 704 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i~g----~~ayv~Q~~ 704 (1513)
-+.++||+|||||-|.+.|.++++.- -+.+++ ..+||..+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fTeaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFTEVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC----CCCCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCEEEECCEEECCH
T ss_conf 47998999988999999999873898--8986255114111110444
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.24 E-value=0.3 Score=22.26 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699998989999995057
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
||.++|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=86.24 E-value=0.24 Score=23.02 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=18.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 399999258974999999981695
Q 000432 661 MKVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
+.+.++|+.||||||+.+.+...+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.14 E-value=0.29 Score=22.42 Aligned_cols=39 Identities=23% Similarity=0.485 Sum_probs=26.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC-----CCCCCCCE-----EEECCEEC
Q ss_conf 92999986999989899999950-----57899748-----99938527
Q 000432 1289 RKKVGVVGRTGSGKSTLIQAIFR-----IVEPTMGS-----IIIDNVDI 1327 (1513)
Q Consensus 1289 GekvgIVGrTGSGKSTL~~~L~r-----l~~p~~G~-----I~IDGvdI 1327 (1513)
.-||.++|..|+|||||++.+.. -+.|+-|. +.+||.++
T Consensus 4 ~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~ 52 (167)
T d1xtqa1 4 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY 52 (167)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEEE
T ss_conf 3389999989929899999997198885447542113103883176798
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.07 E-value=0.3 Score=22.23 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.0
Q ss_pred EEEEEECCCCCHHHHHHHHHC
Q ss_conf 999992589749999999816
Q 000432 662 KVAICGTVGSGKSSLLSCILG 682 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llG 682 (1513)
+++++|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.05 E-value=0.27 Score=22.65 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=86.00 E-value=0.24 Score=23.01 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=19.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 3999992589749999999816956
Q 000432 661 MKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
.-+.|+|++|||||+++..++-..-
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~ 75 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGL 75 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 6589990799968999999999998
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.00 E-value=0.31 Score=22.18 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=24.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 28929999869999898999999505789
Q 000432 1287 PGRKKVGVVGRTGSGKSTLIQAIFRIVEP 1315 (1513)
Q Consensus 1287 ~~GekvgIVGrTGSGKSTL~~~L~rl~~p 1315 (1513)
+.|-.|.|.|.-||||||+++.|..-+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.99 E-value=0.28 Score=22.51 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=21.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 3999992589749999999816956
Q 000432 661 MKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
.+++|.|..||||||+++.|...+.
T Consensus 1 mlI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9899989987899999999999998
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.98 E-value=0.34 Score=21.83 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
||.++|.+|+|||||++.+..
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=85.96 E-value=0.27 Score=22.62 Aligned_cols=23 Identities=35% Similarity=0.317 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699998989999995057
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
+|.|.|+.||||||+.+.|..-+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.95 E-value=0.39 Score=21.41 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=21.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 9999925897499999998169568
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQK 686 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~~ 686 (1513)
-+||+|.+.+|||||+..|+|....
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~~ 34 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWTS 34 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC-
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCH
T ss_conf 8999972488699999999704121
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=85.85 E-value=0.59 Score=19.95 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=24.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 839999925897499999998169568773
Q 000432 660 GMKVAICGTVGSGKSSLLSCILGEIQKMAG 689 (1513)
Q Consensus 660 G~~vaIvG~sGSGKSTLl~~llGe~~~~~G 689 (1513)
...+.|+|+.|+|||++++.+...+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.84 E-value=0.3 Score=22.32 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699998989999995057
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
+|.|+|+.||||||+.+.|..-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.83 E-value=0.23 Score=23.16 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
-++|+|++++|||||+..|++.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999947898499999999998
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=85.80 E-value=0.096 Score=26.17 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=28.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCC
Q ss_conf 9999869999898999999505789974899938527999957762000887477754
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTL 1348 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i~iIpQdp~L 1348 (1513)
.|||.|.|||||||+.+.|..++... | -...+|.||.+-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-~------------------v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-G------------------VKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-T------------------CCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C------------------CCEEEEECCCCC
T ss_conf 99998999780999999999997156-9------------------976999477787
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.78 E-value=0.63 Score=19.71 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=18.6
Q ss_pred EEEEEECCCCCHHHHHHHHHC
Q ss_conf 999992589749999999816
Q 000432 662 KVAICGTVGSGKSSLLSCILG 682 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llG 682 (1513)
+++++|..|+|||||++.++.
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.74 E-value=0.045 Score=28.77 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999898999999505
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRI 1312 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl 1312 (1513)
||+++|++|+|||||+++|.+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.58 E-value=0.26 Score=22.72 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
|+.+||..|+|||||++.+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999399999999962
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=85.55 E-value=0.31 Score=22.14 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699998989999995057
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
+|.|+|+.||||||+.+.|..-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.52 E-value=0.35 Score=21.76 Aligned_cols=49 Identities=35% Similarity=0.478 Sum_probs=32.1
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99996799808999999401304897178399999258974999999981695
Q 000432 632 VEVVNGKFSWNPESSSPTLDGIQLKVKRGMKVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 632 I~~~~~sf~w~~~~~~~~L~~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
|+-+++.+..+++. -..|+.++ .|=..|+|+|+.++|||+|++.++|..
T Consensus 8 i~~~~~~l~~~~e~-l~~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 8 IENTNGRLMANPEA-LKILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEETTEEEECHHH-HHHHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EECCCCEEEECHHH-HHHHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 97699949989999-99997079---987999988999997999999980998
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.51 E-value=0.65 Score=19.62 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+++++|..|+|||||++.+++.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=85.50 E-value=0.21 Score=23.41 Aligned_cols=25 Identities=40% Similarity=0.612 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9299998699998989999995057
Q 000432 1289 RKKVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1289 GekvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
.-+|||.|+-|||||||+..|.+.+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=85.49 E-value=0.65 Score=19.61 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=33.1
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHH
Q ss_conf 5998899856777999987999999999855--9938998615913575
Q 000432 1415 KKSSILVLDEATASVDSATDGVIQKIISQEF--KDRTVVTIAHRIHTVI 1461 (1513)
Q Consensus 1415 r~~~ILiLDEaTsslD~~Td~~Iq~~ir~~f--~~~TvI~IAHRl~ti~ 1461 (1513)
.+..++++||.-.+-|++-...+-..+-+.+ .++++++++|..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 9772785545456862332002588888888623761378652023332
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.47 E-value=0.33 Score=21.94 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=19.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+++++|..|+|||||++.+++.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.37 E-value=0.31 Score=22.15 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+++++|..|+|||||++.+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=85.33 E-value=0.47 Score=20.74 Aligned_cols=29 Identities=41% Similarity=0.478 Sum_probs=22.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 2999986999989899999950-----5789974
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFR-----IVEPTMG 1318 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~r-----l~~p~~G 1318 (1513)
-||.++|..|+|||||++.+.. -++|+.|
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~ 38 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 38 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 6999999899588999999972999865477534
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.32 E-value=0.33 Score=21.98 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
||.++|..|+|||||++.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.27 E-value=0.31 Score=22.17 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.3
Q ss_pred EEEEEECCCCCHHHHHHHHHC
Q ss_conf 999992589749999999816
Q 000432 662 KVAICGTVGSGKSSLLSCILG 682 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llG 682 (1513)
+++++|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=85.24 E-value=0.32 Score=22.04 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=17.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 99999258974999999981695
Q 000432 662 KVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
.+.++|+.||||||..+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.23 E-value=0.25 Score=22.84 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998699998989999995057
Q 000432 1288 GRKKVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1288 ~GekvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
|=..|+|+|+.++|||||++.|++-.
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 87999988999997999999980998
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.23 E-value=0.42 Score=21.10 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=25.2
Q ss_pred CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 5200115896289299998699998989999995
Q 000432 1277 SVLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIF 1310 (1513)
Q Consensus 1277 ~vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~ 1310 (1513)
..|.| -+++|+.+-|.|++||||||+..-++
T Consensus 27 ~ll~G---Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 27 KLLGG---GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp HHHTS---SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHCC---CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 74269---95588799998589898899999999
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.22 E-value=0.26 Score=22.76 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 9999925897499999998169568
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQK 686 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~~ 686 (1513)
.+.+.||+|+||||++.++..++..
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 4999879999888999999999875
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.18 E-value=0.67 Score=19.51 Aligned_cols=45 Identities=9% Similarity=0.060 Sum_probs=29.6
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHH-HHHHHHC--CCCEEEEECCCHHH
Q ss_conf 599889985677799998799999-9999855--99389986159135
Q 000432 1415 KKSSILVLDEATASVDSATDGVIQ-KIISQEF--KDRTVVTIAHRIHT 1459 (1513)
Q Consensus 1415 r~~~ILiLDEaTsslD~~Td~~Iq-~~ir~~f--~~~TvI~IAHRl~t 1459 (1513)
.+..++++||.-.+=+++-...+- ..+.... ..+.+++.+|-...
T Consensus 119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 466088532223587745666789876454320454428985246877
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.14 E-value=0.31 Score=22.12 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
|+.++|..|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.14 E-value=0.31 Score=22.12 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
||.++|..|+|||||++.+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=85.12 E-value=0.33 Score=21.99 Aligned_cols=28 Identities=43% Similarity=0.608 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 999986999989899999950578997489993
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIID 1323 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~ID 1323 (1513)
.|||+|..||||||..+.|-.+ |--.+|
T Consensus 5 iIgitG~igSGKStv~~~l~~~-----G~~vid 32 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL-----GINVID 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT-----TCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCCEEE
T ss_conf 9997898868899999999987-----991997
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=85.10 E-value=0.43 Score=21.01 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=24.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 962892999986999989899999950
Q 000432 1285 TFPGRKKVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1285 ~i~~GekvgIVGrTGSGKSTL~~~L~r 1311 (1513)
-+++|+.+-|.|++|+|||++..-+.-
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 862885999991799998999999999
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.08 E-value=0.68 Score=19.48 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=14.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 999992589749999999816956
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
-+.+.|+.|+||+|+...+..++-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 798889998759999999998210
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.08 E-value=0.42 Score=21.08 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=26.1
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2001158962892999986999989899999950
Q 000432 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1278 vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~r 1311 (1513)
.|.| -+++|+.+-|.|++|+|||++..-+..
T Consensus 29 ~lgG---Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 29 LLGG---GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp HTTS---SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred HHCC---CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3169---976897999988998878899999999
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=85.05 E-value=0.58 Score=20.03 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=25.5
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2001158962892999986999989899999950
Q 000432 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1278 vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~r 1311 (1513)
.+++-.+ --.|.-+.|+|++|+||||++..|.+
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEEE-EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 2899999-99999999980899998999999998
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.05 E-value=0.32 Score=22.02 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.0
Q ss_pred EEEEEECCCCCHHHHHHHHHC
Q ss_conf 999992589749999999816
Q 000432 662 KVAICGTVGSGKSSLLSCILG 682 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llG 682 (1513)
-+||+|++|||||||..+|+-
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~ 28 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILY 28 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999995898998999999999
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.94 E-value=0.26 Score=22.70 Aligned_cols=117 Identities=19% Similarity=0.185 Sum_probs=67.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHCCCCCCCCCH
Q ss_conf 62892999986999989899999950578997489993852799995776200088747775466767550487999999
Q 000432 1286 FPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSD 1365 (1513)
Q Consensus 1286 i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~~~~sd 1365 (1513)
++.+..|-|+|+.||||||+.+.|..-+ |-..|+.-| -+|..+ ...+ ...-++.+.++.....+|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~-------llr~~~---~~~~-~~~~~~~~~~~~~~~~~~ 69 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGD-------LLRAEV---SSGS-ARGKMLSEIMEKGQLVPL 69 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHH-------HHHHHH---HHTC-HHHHHHHHHHTTTCCCCH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEECCH-------HHHHHH---HHHH-HHHHHHHHHHHHCCCCCH
T ss_conf 4678289998999998799999999986----984683347-------899999---8767-651456777763137762
Q ss_pred HHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999999998499389985110221010049998890599999999997059988998567
Q 000432 1366 KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEA 1425 (1513)
Q Consensus 1366 eei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~~ILiLDEa 1425 (1513)
+-+...+... +...+...+..+-++ +..-..|.-.+.+.+.....+..+|.+
T Consensus 70 ~~~~~~~~~~-----l~~~~~~~~g~ildg---~pr~~~qa~~~~~~~~~~~~~~~~~~~ 121 (194)
T d3adka_ 70 ETVLDMLRDA-----MVAKVDTSKGFLIDG---YPREVKQGEEFERKIGQPTLLLYVDAG 121 (194)
T ss_dssp HHHHHHHHHH-----HHTTTTTCSCEEEES---CCSSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HEEEEEHHHH-----HHHCCCCCCCCEEEE---CCCHHHHHHHHHHHHCCCCCHHCCCCC
T ss_conf 2244102456-----640322356602431---110157899999983775200003331
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.94 E-value=0.37 Score=21.52 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+++++|..|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.92 E-value=0.33 Score=21.96 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 39999925897499999998169
Q 000432 661 MKVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe 683 (1513)
.+++|+|..|+|||||++.+.+.
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998993889999999719
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.80 E-value=0.33 Score=21.90 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=19.0
Q ss_pred EEEEEECCCCCHHHHHHHHHC
Q ss_conf 999992589749999999816
Q 000432 662 KVAICGTVGSGKSSLLSCILG 682 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llG 682 (1513)
+++++|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=84.79 E-value=0.38 Score=21.44 Aligned_cols=68 Identities=19% Similarity=0.172 Sum_probs=38.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHCCCCCCCCCHHHHHH
Q ss_conf 99998699998989999995057899748999385279999577620008874777546676755048799999999999
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWE 1370 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~~~~sdeei~~ 1370 (1513)
+|.|+|+.||||||..+.|..-+. -..|+.-| -+|.... ...-..-.+++-++......|+.+..
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~----~~~i~~~~-------llr~~~~----~~~~~~~~i~~~~~~g~~~~d~~v~~ 66 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG----IPQISTGD-------MLRAAVK----SGSELGKQAKDIMDAGKLVTDELVIA 66 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC----CCEEEHHH-------HHHHHHH----HTCTTTGGGHHHHHHTCCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC----CCEECHHH-------HHHHHHC----CCCHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 899987999998999999999869----95551014-------7677550----39858999999997699871163999
Q ss_pred HHH
Q ss_conf 999
Q 000432 1371 ALD 1373 (1513)
Q Consensus 1371 aL~ 1373 (1513)
.+.
T Consensus 67 ~~~ 69 (179)
T d1e4va1 67 LVK 69 (179)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.73 E-value=0.42 Score=21.10 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
||.+||..|+|||||++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999972
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=84.69 E-value=0.46 Score=20.78 Aligned_cols=32 Identities=41% Similarity=0.560 Sum_probs=25.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999869999898999999505789974899938
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN 1324 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDG 1324 (1513)
-+-++|++|+|||||+++|.+.+. .+-+.|++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--CCEEEEEC
T ss_conf 999889799889999999999865--15489832
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=84.63 E-value=0.28 Score=22.51 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=23.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999925897499999998169568773
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQKMAG 689 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~~~~G 689 (1513)
-+.++||.|+||||+.+++..++....+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 4898799997388999999850388853
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.63 E-value=0.36 Score=21.68 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999986999989899999950
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~r 1311 (1513)
-||.++|.+|+|||||++.+..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899388999999971
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.62 E-value=0.39 Score=21.34 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+++++|..|+|||||++.+++.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.60 E-value=0.34 Score=21.81 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999869999898999999505
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFRI 1312 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~rl 1312 (1513)
=.|||+|+.++|||||+..|+..
T Consensus 4 ini~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 4 VNVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHH
T ss_conf 19999947898499999999998
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=84.58 E-value=0.36 Score=21.67 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 7839999925897499999998169
Q 000432 659 RGMKVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 659 ~G~~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+.-+++++|..|+|||||++.+.+.
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 6689999999999889999887338
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.56 E-value=0.42 Score=21.10 Aligned_cols=22 Identities=45% Similarity=0.599 Sum_probs=19.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+++++|..|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=84.51 E-value=0.21 Score=23.53 Aligned_cols=24 Identities=21% Similarity=0.445 Sum_probs=20.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 289299998699998989999995
Q 000432 1287 PGRKKVGVVGRTGSGKSTLIQAIF 1310 (1513)
Q Consensus 1287 ~~GekvgIVGrTGSGKSTL~~~L~ 1310 (1513)
++.=||.++|.+|+|||||++.+.
T Consensus 15 ~k~~KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 15 NKELRILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 966899999999998899998873
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.49 E-value=0.36 Score=21.64 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=59.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHCCCCCCCCCHHHHHH
Q ss_conf 99998699998989999995057899748999385279999577620008874777546676755048799999999999
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVWE 1370 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~~~~sdeei~~ 1370 (1513)
+|.|+|+.||||||..+.|..-+ |-..|+- -+-+|..+ -++...+.-.+.+.+.-.....|+.+.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~-------g~llR~~~---~~~~~~~~~~~~~~~~~~~~v~d~~~~~ 68 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSA-------GELLRDER---KNPDSQYGELIEKYIKEGKIVPVEITIS 68 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH-------HHHHHHHH---HCTTSTTHHHHHHHHHTTCCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEECH-------HHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99997999999899999999986----9926768-------89999988---7620468999999970697211340367
Q ss_pred HHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCC---EEEEECC
Q ss_conf 999849938998511022101004999889059999999999705998---8998567
Q 000432 1371 ALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSS---ILVLDEA 1425 (1513)
Q Consensus 1371 aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~~---ILiLDEa 1425 (1513)
.+...- .+..... ..-+..+.+ .+-..+.|...+.+.+-.... ++++|.+
T Consensus 69 ~~~~~~-~~~~~~~-~~~~~~~~~---g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~ 121 (194)
T d1teva_ 69 LLKREM-DQTMAAN-AQKNKFLID---GFPRNQDNLQGWNKTMDGKADVSFVLFFDCN 121 (194)
T ss_dssp HHHHHH-HHHHHHC-TTCCEEEEE---SCCCSHHHHHHHHHHHTTTCEEEEEEEEECC
T ss_pred HHHHHH-CCCCHHH-HCCCCEEEC---CCHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 888764-1210001-124511101---1030489999986442105543389962476
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=84.45 E-value=0.29 Score=22.40 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=23.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999869999898999999505789974899938
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN 1324 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDG 1324 (1513)
.|.++|..||||||+.+.|..-+ |--.+|.
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d~ 31 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLDS 31 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCCEEEC
T ss_conf 39998999998899999999983----9987836
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=84.45 E-value=0.4 Score=21.33 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=17.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHC
Q ss_conf 3999992589749999999816
Q 000432 661 MKVAICGTVGSGKSSLLSCILG 682 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llG 682 (1513)
.+++|+|..||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.41 E-value=0.39 Score=21.39 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=22.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 39999925897499999998169568
Q 000432 661 MKVAICGTVGSGKSSLLSCILGEIQK 686 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe~~~ 686 (1513)
++++|-|..||||||+++.|-..+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.41 E-value=0.28 Score=22.47 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=16.9
Q ss_pred EEEEECCCCCHHHHHHHHHCCC
Q ss_conf 9999258974999999981695
Q 000432 663 VAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 663 vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
++++|+.||||||+.+.|...+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.37 E-value=0.4 Score=21.31 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999986999989899999950
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~r 1311 (1513)
=||.++|..|+|||||++.+.+
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 2899999899088999999971
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.35 E-value=0.65 Score=19.62 Aligned_cols=40 Identities=23% Similarity=0.438 Sum_probs=30.1
Q ss_pred CEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 3048971783999992589749999999816956877389
Q 000432 652 GIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIQKMAGTV 691 (1513)
Q Consensus 652 ~inl~i~~G~~vaIvG~sGSGKSTLl~~llGe~~~~~G~I 691 (1513)
|.-+.+-+|++.+|.|..|+|||+|+.-+..-.......+
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v 99 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 99 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSE
T ss_pred EEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf 1025636788777667999898999999999887617996
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=84.30 E-value=0.42 Score=21.14 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8929999869999898999999505789
Q 000432 1288 GRKKVGVVGRTGSGKSTLIQAIFRIVEP 1315 (1513)
Q Consensus 1288 ~GekvgIVGrTGSGKSTL~~~L~rl~~p 1315 (1513)
.|..|.|-|.-||||||++..|...++.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9878999899888799999999999996
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=84.26 E-value=0.36 Score=21.62 Aligned_cols=45 Identities=24% Similarity=0.198 Sum_probs=31.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH
Q ss_conf 892999986999989899999950578997489993852799995
Q 000432 1288 GRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGL 1332 (1513)
Q Consensus 1288 ~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l 1332 (1513)
.+..+.+||+||+||||.+-=|...+.-.+-++.+=..|...++-
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA 49 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAG 49 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 977999989999988999999999999779907999813666540
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.24 E-value=0.49 Score=20.60 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
|+.|+|..|+|||||++-+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=84.16 E-value=0.41 Score=21.23 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=33.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEE
Q ss_conf 96289299998699998989999995057899748-9993852
Q 000432 1285 TFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTMGS-IIIDNVD 1326 (1513)
Q Consensus 1285 ~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~-I~IDGvd 1326 (1513)
-+++|..+-|.|++||||||+...+..-..-.+|. ++||.-.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9667358998057774789999999999870898799986544
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=84.13 E-value=0.36 Score=21.66 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
||.++|+.|+|||||++.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=84.12 E-value=0.74 Score=19.17 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=17.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 83999992589749999999816956
Q 000432 660 GMKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 660 G~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
...++++|++|+||||.+.-|...+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 86899989999988999999999999
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.10 E-value=0.41 Score=21.17 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=18.6
Q ss_pred EEEEEECCCCCHHHHHHHHHC
Q ss_conf 999992589749999999816
Q 000432 662 KVAICGTVGSGKSSLLSCILG 682 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llG 682 (1513)
+++++|+.|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.08 E-value=0.64 Score=19.66 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=21.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 99999258974999999981695687738
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQKMAGT 690 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~~~~G~ 690 (1513)
+++++|..|+|||||++-+...-.++.|.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCE
T ss_conf 99999999988899999884089797247
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=84.07 E-value=0.75 Score=19.16 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 3999992589749999999816956
Q 000432 661 MKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
.-+.+.||.|||||++.+++..+..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 0799889699988999999862010
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.99 E-value=0.45 Score=20.92 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=13.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
.+.|.|+.||||||+.+.|...
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999979999999999
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=83.99 E-value=0.3 Score=22.24 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=23.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 29999869999898999999505789974899938
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDN 1324 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDG 1324 (1513)
+.|-++|..||||||+.+.|..-+ |--.+|+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L----g~~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL----GYEFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH----TCEEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH----CCCEEEH
T ss_conf 988998899998899999999994----9987865
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=83.95 E-value=0.75 Score=19.12 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=25.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99999258974999999981695687738999
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQKMAGTVKI 693 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~~~~G~I~i 693 (1513)
++.|-|..||||||+++.|...+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99998886678999999999986569976998
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.90 E-value=0.23 Score=23.19 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+++++|..|+|||||++.+++.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=83.90 E-value=0.75 Score=19.14 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=25.9
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 20011589628929999869999898999999505
Q 000432 1278 VLKNISCTFPGRKKVGVVGRTGSGKSTLIQAIFRI 1312 (1513)
Q Consensus 1278 vLk~is~~i~~GekvgIVGrTGSGKSTL~~~L~rl 1312 (1513)
.+++ ++---.|.-+.|.|++|+||||+...|.+-
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.86 E-value=0.29 Score=22.35 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999986999989899999950
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~r 1311 (1513)
=|+.++|.+|+|||||++.+..
T Consensus 6 iKivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 6 IKCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 9999999999799999999974
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.81 E-value=0.41 Score=21.25 Aligned_cols=21 Identities=43% Similarity=0.572 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
||.+||..|+|||||++.+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.79 E-value=0.39 Score=21.38 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
||.++|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=83.71 E-value=0.38 Score=21.49 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=22.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 783999992589749999999816956
Q 000432 659 RGMKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 659 ~G~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
+.-++.++|+.|+|||||++.+.+...
T Consensus 11 k~~kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 11 KEMRILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp CCEEEEEEEETTSSHHHHHHHTTCCCC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 747999999999878999999844888
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=83.69 E-value=0.4 Score=21.27 Aligned_cols=186 Identities=18% Similarity=0.243 Sum_probs=101.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHCC-C-CCC-CCCH
Q ss_conf 999986999989899999950578--9974899938527999957762000887477754667675504-8-799-9999
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIVE--PTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL-D-PLV-QYSD 1365 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~~--p~~G~I~IDGvdI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NL-d-p~~-~~sd 1365 (1513)
.|+|+|..|+|||||+.+|+..-. ...|++. +|..+.+...+.-.+.+++-+.-..+--...+-|+ | |+. ++.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~- 81 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV- 81 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH-
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCHHHHH-
T ss_conf 999994889809999999999709755306622-221135626988873876875102222343210688068155433-
Q ss_pred HHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE---ECCCCCCCHHHHHHHHHHHH
Q ss_conf 999999998499389985110221010049998890599999999997059988998---56777999987999999999
Q 000432 1366 KQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVL---DEATASVDSATDGVIQKIIS 1442 (1513)
Q Consensus 1366 eei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~~ILiL---DEaTsslD~~Td~~Iq~~ir 1442 (1513)
.|...++..+...= .|-+.-.....+-++.+-.++. .+.|.++++ |.+ + |.. . ..+.++
T Consensus 82 ~e~~~al~~~D~av-----------lvvda~~Gv~~~t~~~~~~~~~-~~~p~~i~iNk~D~~-~--~~~--~-~l~~~~ 143 (267)
T d2dy1a2 82 GEIRGALEAADAAL-----------VAVSAEAGVQVGTERAWTVAER-LGLPRMVVVTKLDKG-G--DYY--A-LLEDLR 143 (267)
T ss_dssp HHHHHHHHHCSEEE-----------EEEETTTCSCHHHHHHHHHHHH-TTCCEEEEEECGGGC-C--CHH--H-HHHHHH
T ss_pred HHHHHHHCCCCCEE-----------EEEECCCCCCCHHHHHHHHHHH-CCCCCCCCCCCCCCC-C--CCH--H-HHHHHH
T ss_conf 55654312467338-----------9842357742115788776554-044310133320222-2--101--2-344688
Q ss_pred HHCCCCEEEEECC----CHHHHHH--CCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHH
Q ss_conf 8559938998615----9135752--1979999498896734925897128839999999
Q 000432 1443 QEFKDRTVVTIAH----RIHTVID--SDLVLVLSDGRIAEYDSPTKLLEREDSFFSQLIK 1496 (1513)
Q Consensus 1443 ~~f~~~TvI~IAH----Rl~ti~~--~DrIlVL~~G~ivE~gsp~~Ll~~~~s~f~~l~~ 1496 (1513)
+.+..+.-+.+-. ....+.| ..+.+..++|.-.+..-|.++.+.-...-.+|++
T Consensus 144 ~~lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~~~~~~r~~L~E 203 (267)
T d2dy1a2 144 STLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLE 203 (267)
T ss_dssp HHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHH
T ss_pred HHHCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEECCHHHHHHHHHHHHHHHH
T ss_conf 874658676860025883268762476548996189874540777789999987799999
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.67 E-value=0.3 Score=22.30 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.67 E-value=0.46 Score=20.84 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8929999869999898999999505789
Q 000432 1288 GRKKVGVVGRTGSGKSTLIQAIFRIVEP 1315 (1513)
Q Consensus 1288 ~GekvgIVGrTGSGKSTL~~~L~rl~~p 1315 (1513)
+|.-|+|-|.-||||||++..|...++.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.65 E-value=0.45 Score=20.88 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=19.0
Q ss_pred EEEEEECCCCCHHHHHHHHHC
Q ss_conf 999992589749999999816
Q 000432 662 KVAICGTVGSGKSSLLSCILG 682 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llG 682 (1513)
+++++|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.61 E-value=0.24 Score=23.08 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
|+.++|.+|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999088999999984
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=83.57 E-value=0.32 Score=22.09 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999989899999950578
Q 000432 1292 VGVVGRTGSGKSTLIQAIFRIVE 1314 (1513)
Q Consensus 1292 vgIVGrTGSGKSTL~~~L~rl~~ 1314 (1513)
+-|.|..||||||+++.|...+.
T Consensus 4 ivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989899898999999999998
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.55 E-value=0.37 Score=21.51 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
||.++|..|+|||||++.+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.55 E-value=0.39 Score=21.35 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
|+.+||..|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=83.49 E-value=0.48 Score=20.66 Aligned_cols=26 Identities=38% Similarity=0.514 Sum_probs=21.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 78399999258974999999981695
Q 000432 659 RGMKVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 659 ~G~~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
+...++|+|+.||||||+...|.-.+
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 62169998899998799999999997
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=83.46 E-value=0.23 Score=23.13 Aligned_cols=37 Identities=19% Similarity=0.417 Sum_probs=25.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 929999869999898999999505789974899938527
Q 000432 1289 RKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDI 1327 (1513)
Q Consensus 1289 GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI 1327 (1513)
+.-+.++||||+|||.|+++|.+.... --+.+|+-++
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~s~~ 85 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKF 85 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCC--CHHCCCCCCC
T ss_conf 866999899998888999998621322--1000344330
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=83.33 E-value=0.43 Score=21.02 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 999992589749999999816956
Q 000432 662 KVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
.++|-||.||||||+.+.|...+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=83.27 E-value=0.48 Score=20.67 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998699998989999995057
Q 000432 1288 GRKKVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1288 ~GekvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
.+..+.|+|+.|+|||||+..+.+-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.22 E-value=0.41 Score=21.19 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
||.+||..|+|||||++.+..
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=83.14 E-value=0.64 Score=19.66 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=27.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9628929999869999898999999505789
Q 000432 1285 TFPGRKKVGVVGRTGSGKSTLIQAIFRIVEP 1315 (1513)
Q Consensus 1285 ~i~~GekvgIVGrTGSGKSTL~~~L~rl~~p 1315 (1513)
..+||..+.+.|.=||||||+++.+.+-+..
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.01 E-value=0.54 Score=20.29 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
||.+||..|+|||||++.+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.00 E-value=0.41 Score=21.23 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
||.++|..|+|||||++.+..
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=82.94 E-value=0.47 Score=20.75 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699998989999995057
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
.|+|-|+.||||||+.+.|..-+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=82.92 E-value=0.42 Score=21.13 Aligned_cols=179 Identities=15% Similarity=0.224 Sum_probs=87.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHCC-C-CCC-CCC
Q ss_conf 2999986999989899999950578--9974899938527999957762000887477754667675504-8-799-999
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFRIVE--PTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNL-D-PLV-QYS 1364 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~rl~~--p~~G~I~IDGvdI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NL-d-p~~-~~s 1364 (1513)
..|||+|..|||||||+.+|+-.-. ...|++. +|-.+.+.......+.+++-+.--.+--..-+-|+ | |+. ++.
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~ 85 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT 85 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTSSCC--------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEE-CCCEEEECCHHHHHCCCCCCCCEEEECCCCEEEEEECCCCHHHHH
T ss_conf 2999995898998999999999648534023365-184698565888751886001123431598389995278602269
Q ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEE---EECCCCCCCHHHHHHHHHHH
Q ss_conf 999999999849938998511022101004999889059999999999705998899---85677799998799999999
Q 000432 1365 DKQVWEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILV---LDEATASVDSATDGVIQKII 1441 (1513)
Q Consensus 1365 deei~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~~ILi---LDEaTsslD~~Td~~Iq~~i 1441 (1513)
.+...++..+... -.|-+.....-.+-++..-.|+. .+-|+|++ ||-+-+.. ..+.+.|
T Consensus 86 -~e~~~~l~~~D~a-----------vlVvda~~Gv~~~T~~~w~~a~~-~~lP~i~fINKmDr~~ad~-----~~~l~ei 147 (276)
T d2bv3a2 86 -IEVERSMRVLDGA-----------IVVFDSSQGVEPQSETVWRQAEK-YKVPRIAFANKMDKTGADL-----WLVIRTM 147 (276)
T ss_dssp -TTHHHHHHHCCEE-----------EEEEETTTSSCHHHHHHHHHHHT-TTCCEEEEEECTTSTTCCH-----HHHHHHH
T ss_pred -HHHHHHHHHHHHE-----------EEECCCCCCCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCC-----CHHHHHH
T ss_conf -9999999963005-----------77322567744669999999998-5999799986445654312-----1268999
Q ss_pred HHHCC-CCEEEEECCC----HHHHHH--CCEEEEEEC---CEEEEECCHHHHHHCC
Q ss_conf 98559-9389986159----135752--197999949---8896734925897128
Q 000432 1442 SQEFK-DRTVVTIAHR----IHTVID--SDLVLVLSD---GRIAEYDSPTKLLERE 1487 (1513)
Q Consensus 1442 r~~f~-~~TvI~IAHR----l~ti~~--~DrIlVL~~---G~ivE~gsp~~Ll~~~ 1487 (1513)
++.+. .+..+.+-=. ...+.| ..+.+.-++ ++..+..-|.++.+..
T Consensus 148 ~~~l~~~~vp~~~Pig~~~~f~GvvDl~~~~a~~~~~~~g~~~~~~~ip~~~~~~~ 203 (276)
T d2bv3a2 148 QERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQA 203 (276)
T ss_dssp HHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEESSSSSCCEEEECCCGGGHHHH
T ss_pred HHHHCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCEECCCCHHHHHHH
T ss_conf 99859971789833457875138850561089985588886540025856777777
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=82.85 E-value=0.25 Score=22.86 Aligned_cols=47 Identities=13% Similarity=0.224 Sum_probs=31.5
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH
Q ss_conf 599889985677799998799999999985599389986159135752
Q 000432 1415 KKSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVID 1462 (1513)
Q Consensus 1415 r~~~ILiLDEaTsslD~~Td~~Iq~~ir~~f~~~TvI~IAHRl~ti~~ 1462 (1513)
.+.+|+++||.- .+.......+...+......+..|.++++.+.+..
T Consensus 108 ~~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~ 154 (231)
T d1iqpa2 108 ASFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIE 154 (231)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred CCCEEEEEHHHH-HCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHCHH
T ss_conf 872288614344-31214789876411247764478861487665657
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.78 E-value=0.48 Score=20.65 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+++|+|..|+|||||++.+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.66 E-value=0.43 Score=21.06 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999989899999950578
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIVE 1314 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~~ 1314 (1513)
+|-++|..||||||+.+.|..-+.
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 489988999988999999999849
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.50 E-value=0.46 Score=20.84 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
||.+||..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=82.38 E-value=0.5 Score=20.50 Aligned_cols=21 Identities=38% Similarity=0.754 Sum_probs=19.1
Q ss_pred EEEEECCCCCHHHHHHHHHCC
Q ss_conf 999925897499999998169
Q 000432 663 VAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 663 vaIvG~sGSGKSTLl~~llGe 683 (1513)
++++|.+.+|||||+..|+..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~ 32 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHD 32 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999937898989999999998
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.35 E-value=0.86 Score=18.67 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.5
Q ss_pred EEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 99992589749999999816956
Q 000432 663 VAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 663 vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
+.+.||.|+||||++.++..++.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.29 E-value=0.55 Score=20.21 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
||.++|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999899999999964
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=82.24 E-value=0.57 Score=20.09 Aligned_cols=30 Identities=17% Similarity=0.486 Sum_probs=24.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 929999869999898999999505789974
Q 000432 1289 RKKVGVVGRTGSGKSTLIQAIFRIVEPTMG 1318 (1513)
Q Consensus 1289 GekvgIVGrTGSGKSTL~~~L~rl~~p~~G 1318 (1513)
...+-|.|++|+||||+++.+.+.+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.23 E-value=0.52 Score=20.39 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=38.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH-HHHCEEEECCCCCCCCCCHHHCCCCCCCCCHHHHH
Q ss_conf 99998699998989999995057899748999385279999577-62000887477754667675504879999999999
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHD-LRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQVW 1369 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~-LR~~i~iIpQdp~LF~GTIR~NLdp~~~~sdeei~ 1369 (1513)
+|-|.|+.||||||+.+.|..-+ |-..|+ ..+ +|+.+ .+. .-..-++++.++-.....++...
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~----g~~~i~--------~~~l~~~~~---~~~-~~~~~~i~~~~~~~~~~~~~~~~ 65 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL----GIPQIS--------TGELFRRNI---EEG-TKLGVEAKRYLDAGDLVPSDLTN 65 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----TCCEEE--------HHHHHHHHH---HTT-CHHHHHHHHHHHHTCCCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEEC--------HHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89998899999799999999998----991672--------578899877---100-35677899999864111468999
Q ss_pred HHHHHCC
Q ss_conf 9999849
Q 000432 1370 EALDKCQ 1376 (1513)
Q Consensus 1370 ~aL~~~~ 1376 (1513)
+.++..-
T Consensus 66 ~~l~~~~ 72 (181)
T d2cdna1 66 ELVDDRL 72 (181)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
T ss_conf 9999876
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=82.19 E-value=0.32 Score=22.05 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=25.7
Q ss_pred EECCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 71783999992589749999999816956
Q 000432 657 VKRGMKVAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 657 i~~G~~vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
+|++..+.++||.|+|||++.+++.+++.
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99767699989999888999999999859
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.08 E-value=0.27 Score=22.64 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
||.++|..|+|||||+..|.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999499999999970
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.07 E-value=0.48 Score=20.64 Aligned_cols=29 Identities=41% Similarity=0.578 Sum_probs=22.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 2999986999989899999950-----5789974
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFR-----IVEPTMG 1318 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~r-----l~~p~~G 1318 (1513)
=|+.++|.+|+|||||++.+.. -++|+.|
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~ 38 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE 38 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 7999999899598999999970988854576312
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=82.02 E-value=0.74 Score=19.17 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=10.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
+++|||+.-+|||||+++|.+
T Consensus 114 ~v~vvG~PNvGKSsliN~L~~ 134 (273)
T d1puja_ 114 RALIIGIPNVGKSTLINRLAK 134 (273)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHC
T ss_conf 789986675443555425426
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.02 E-value=0.53 Score=20.36 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
+++++|..|+|||||++.+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996999999999719
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.98 E-value=0.56 Score=20.11 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
++++||..|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.89 E-value=0.49 Score=20.61 Aligned_cols=22 Identities=41% Similarity=0.715 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999986999989899999950
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~r 1311 (1513)
=|+.++|..|+|||||++.+..
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899789999999971
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=81.62 E-value=0.54 Score=20.25 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=22.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 2999986999989899999950578997489993
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIID 1323 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~ID 1323 (1513)
..|||.|.-||||||..+.|..-+ |-..+|
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~ 31 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC----CCEEEC
T ss_conf 899997999988999999999868----985980
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.60 E-value=0.49 Score=20.57 Aligned_cols=21 Identities=38% Similarity=0.552 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
||.+||..|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999899899999999970
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=81.52 E-value=0.7 Score=19.37 Aligned_cols=28 Identities=43% Similarity=0.589 Sum_probs=23.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2892999986999989899999950578
Q 000432 1287 PGRKKVGVVGRTGSGKSTLIQAIFRIVE 1314 (1513)
Q Consensus 1287 ~~GekvgIVGrTGSGKSTL~~~L~rl~~ 1314 (1513)
+|.=.|||+|...+|||||+..|++...
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9970899997248869999999970412
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.43 E-value=0.62 Score=19.81 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999986999989899999950
Q 000432 1290 KKVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1290 ekvgIVGrTGSGKSTL~~~L~r 1311 (1513)
-||.++|.+|+|||||++.+..
T Consensus 3 ~KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 6999999999598999999972
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=81.40 E-value=0.56 Score=20.17 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.9
Q ss_pred EEEEEECCCCCHHHHHHHHHC
Q ss_conf 999992589749999999816
Q 000432 662 KVAICGTVGSGKSSLLSCILG 682 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llG 682 (1513)
-++|+|.+++|||||+..|+.
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll~ 25 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLLM 25 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 899994479999999999999
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.30 E-value=0.56 Score=20.15 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
||.++|..|+|||||++.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999699999999971
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=81.25 E-value=0.66 Score=19.60 Aligned_cols=111 Identities=15% Similarity=0.131 Sum_probs=55.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHCCCCCCCCCHHHH
Q ss_conf 92999986999989899999950578997489993852799995776200088747775466767550487999999999
Q 000432 1289 RKKVGVVGRTGSGKSTLIQAIFRIVEPTMGSIIIDNVDITKIGLHDLRSRLGIIPQDPTLFDGTVRGNLDPLVQYSDKQV 1368 (1513)
Q Consensus 1289 GekvgIVGrTGSGKSTL~~~L~rl~~p~~G~I~IDGvdI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~~~~sdeei 1368 (1513)
.-+|.|+|+-||||||+...|..-+ |-..|+-- +-+|..+ ++..-+.-.+++.++.+....|+.+
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~----g~~~is~g-------dllr~~~----~~~~~~~~~~~~~~~~~~~v~~~~~ 70 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHF----ELKHLSSG-------DLLRDNM----LRGTEIGVLAKTFIDQGKLIPDDVM 70 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHB----CCEEEEHH-------HHHHHHH----HTTCHHHHHHHHHHHTTCCCCHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH----CCEEECHH-------HHHHHHH----HHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 2169998899998799999999997----98687189-------9999998----7401566899987636641330344
Q ss_pred HHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999998499389985110221010049998890599999999997059988998567
Q 000432 1369 WEALDKCQLGDLVRAKEEKLDSTVAENGENWSVGQRQLFCLGRTLLKKSSILVLDEA 1425 (1513)
Q Consensus 1369 ~~aL~~~~L~~~v~~lp~gLdt~V~e~G~nLS~GQrQll~LARALLr~~~ILiLDEa 1425 (1513)
...++.. +... ..-. .|-+ |---+ ..|.-.|-+ .+.-..++.||-+
T Consensus 71 ~~l~~~~-----~~~~-~~~~-~ild-GfPr~--~~q~~~l~~-~~~~~~vi~L~v~ 116 (189)
T d2ak3a1 71 TRLVLHE-----LKNL-TQYN-WLLD-GFPRT--LPQAEALDR-AYQIDTVINLNVP 116 (189)
T ss_dssp HHHHHHH-----HHHH-TTSC-EEEE-SCCCS--HHHHHHHHT-TCCCCEEEEEECC
T ss_pred HHHHHHH-----HHHH-HHCC-CCCC-CCCCH--HHHHHHHHH-CCCCEEEEEEECC
T ss_conf 5445554-----4212-1058-4244-52100--067887631-5753299997244
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.10 E-value=0.51 Score=20.48 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=23.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHH-HCCCCCCCC
Q ss_conf 7839999925897499999998-169568773
Q 000432 659 RGMKVAICGTVGSGKSSLLSCI-LGEIQKMAG 689 (1513)
Q Consensus 659 ~G~~vaIvG~sGSGKSTLl~~l-lGe~~~~~G 689 (1513)
+--++.++|..|+|||||++-+ .++..|+-|
T Consensus 5 ~~~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 5 ATHRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp HSEEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred HCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 34779999899998899999895098278888
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.07 E-value=0.53 Score=20.33 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999989899999950
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFR 1311 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~r 1311 (1513)
|+.++|..|+|||||++.+..
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=80.98 E-value=0.49 Score=20.62 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=25.2
Q ss_pred CEEEEEECCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 3048971783999992589749999999816
Q 000432 652 GIQLKVKRGMKVAICGTVGSGKSSLLSCILG 682 (1513)
Q Consensus 652 ~inl~i~~G~~vaIvG~sGSGKSTLl~~llG 682 (1513)
|.=+.+-+|++..|.|+.|+|||+|+..+..
T Consensus 59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~ 89 (276)
T d1fx0a3 59 DAMIPVGRGQRELIIGDRQTGKTAVATDTIL 89 (276)
T ss_dssp TTTSCCBTTCBCBEEESSSSSHHHHHHHHHH
T ss_pred ECCCCCCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 5014546776676006778885799999776
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.96 E-value=0.33 Score=21.91 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.8
Q ss_pred EEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 99992589749999999816956
Q 000432 663 VAICGTVGSGKSSLLSCILGEIQ 685 (1513)
Q Consensus 663 vaIvG~sGSGKSTLl~~llGe~~ 685 (1513)
+.+.||+|+||||+++++..++.
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l~ 58 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKELY 58 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999984999999999970
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.94 E-value=0.64 Score=19.70 Aligned_cols=19 Identities=37% Similarity=0.552 Sum_probs=16.4
Q ss_pred EEEEEECCCCCHHHHHHHH
Q ss_conf 9999925897499999998
Q 000432 662 KVAICGTVGSGKSSLLSCI 680 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~l 680 (1513)
++.++|..|+|||||++-+
T Consensus 4 KivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999989999989999988
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.90 E-value=0.64 Score=19.69 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999898999999505789
Q 000432 1291 KVGVVGRTGSGKSTLIQAIFRIVEP 1315 (1513)
Q Consensus 1291 kvgIVGrTGSGKSTL~~~L~rl~~p 1315 (1513)
.|.|-|.-||||||+++.|...++.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999899878999999999999987
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=80.83 E-value=0.35 Score=21.72 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.1
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 999925897499999998169568
Q 000432 663 VAICGTVGSGKSSLLSCILGEIQK 686 (1513)
Q Consensus 663 vaIvG~sGSGKSTLl~~llGe~~~ 686 (1513)
+.+.||.|+||||+.+++.+++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~~ 61 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELGV 61 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 898897998788899999998498
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=80.78 E-value=0.5 Score=20.53 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9999925897499999998169
Q 000432 662 KVAICGTVGSGKSSLLSCILGE 683 (1513)
Q Consensus 662 ~vaIvG~sGSGKSTLl~~llGe 683 (1513)
-+||+|.+.+|||||+..|++.
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8999958898099999999999
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=80.70 E-value=0.74 Score=19.19 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=27.9
Q ss_pred EEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 158962892999986999989899999950578
Q 000432 1282 ISCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVE 1314 (1513)
Q Consensus 1282 is~~i~~GekvgIVGrTGSGKSTL~~~L~rl~~ 1314 (1513)
.=+.|-.|+|++|+|..|+|||||+..+.+-..
T Consensus 36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 125645787556867999887899999999775
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.20 E-value=0.68 Score=19.50 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=17.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 399999258974999999981695
Q 000432 661 MKVAICGTVGSGKSSLLSCILGEI 684 (1513)
Q Consensus 661 ~~vaIvG~sGSGKSTLl~~llGe~ 684 (1513)
..+.+.|+.||||||+.+.|.-.+
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699998999999899999999996
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=80.05 E-value=0.65 Score=19.64 Aligned_cols=26 Identities=38% Similarity=0.616 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998699998989999995057
Q 000432 1288 GRKKVGVVGRTGSGKSTLIQAIFRIV 1313 (1513)
Q Consensus 1288 ~GekvgIVGrTGSGKSTL~~~L~rl~ 1313 (1513)
|.=.|||+|+-++|||||+..|++..
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 97189999588980999999999999
|