Citrus Sinensis ID: 000450
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1496 | 2.2.26 [Sep-21-2011] | |||||||
| Q920I9 | 1489 | WD repeat-containing prot | yes | no | 0.233 | 0.234 | 0.221 | 1e-10 | |
| Q9Y4E6 | 1490 | WD repeat-containing prot | yes | no | 0.232 | 0.233 | 0.218 | 1e-10 | |
| Q9ERH3 | 1488 | WD repeat-containing prot | yes | no | 0.241 | 0.242 | 0.218 | 7e-10 | |
| Q922V4 | 513 | Pleiotropic regulator 1 O | no | no | 0.098 | 0.286 | 0.329 | 1e-06 | |
| O43660 | 514 | Pleiotropic regulator 1 O | no | no | 0.096 | 0.282 | 0.32 | 1e-06 | |
| Q12417 | 451 | Pre-mRNA-splicing factor | yes | no | 0.079 | 0.263 | 0.304 | 1e-06 | |
| Q9WUC8 | 514 | Pleiotropic regulator 1 O | no | no | 0.096 | 0.282 | 0.32 | 1e-06 | |
| Q2KID6 | 513 | Pleiotropic regulator 1 O | no | no | 0.096 | 0.282 | 0.32 | 1e-06 | |
| O13615 | 473 | Pre-mRNA-splicing factor | yes | no | 0.086 | 0.274 | 0.313 | 8e-06 | |
| Q5BE22 | 452 | Pre-mRNA-splicing factor | yes | no | 0.099 | 0.329 | 0.289 | 9e-06 |
| >sp|Q920I9|WDR7_MOUSE WD repeat-containing protein 7 OS=Mus musculus GN=Wdr7 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 92/416 (22%), Positives = 162/416 (38%), Gaps = 67/416 (16%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH V CL V + L+SG +D S+ IWD+ SG + + H + Q+
Sbjct: 462 GHRNKVTCLLYPHQVSARYDQRY---LISGGVDFSVIIWDIFSGEMKHIFCVHGGEITQL 518
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVV-WDCPRGYIAC 686
++ P C SV D SV L SL + + H +P +V+ W Y+
Sbjct: 519 LVPPENCSARVQHCICSVASDHSVGLLSLREKKCIMLASRH-LFPIQVIKWRPSDDYLVV 577
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGI--SMNSISGSVLNGN 744
C D S +++W + TGA +R G + + + + + +++S+S +N
Sbjct: 578 GCTDGS--------VYVWQMDTGALDRCAMGITAVEILNACDEAVPAAVDSLSHPAVNLK 629
Query: 745 TSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASHVRKGNSGKPSLNTRIGLQRK 804
+++ L ++ ++Q + S S+ KGN K S N+ +
Sbjct: 630 QAMTRRSLAALKN--MAHHKLQTLATNLLASEASD-------KGNLPKYSHNSLM----- 675
Query: 805 KQTIKCSCPYPGIATLSFDLASLMFPYQMHESAAKN---------------GDKQENFTT 849
Q IK + P I L FD+ +L+ E++ N DK +F T
Sbjct: 676 VQAIKTNLTDPDIHVLFFDVEALIIQLLTEEASRPNTALISPENLQKASGSSDKGGSFLT 735
Query: 850 -------MEHGTETAGPN------AMTAADGSNGHSMSTDTIEEHTWIKSLEECILRFSL 896
+ ET N + D+ E+ KS +L ++L
Sbjct: 736 GKRAAVLFQQVKETIKENIKEHLLDEEEDEEEARRQSREDSDPEYRASKSKPLTLLEYNL 795
Query: 897 SF---------LHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFPG 943
+ LH W ++ LD++ + + + +P + V+ GL G ++L PG
Sbjct: 796 TMDTAKLFMSCLHAWGLNEVLDEVCLDRLGMLKP-HCTVSFGLLSRGGHMSLMLPG 850
|
Mus musculus (taxid: 10090) |
| >sp|Q9Y4E6|WDR7_HUMAN WD repeat-containing protein 7 OS=Homo sapiens GN=WDR7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 91/417 (21%), Positives = 164/417 (39%), Gaps = 69/417 (16%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH V CL V + L+SG +D S+ IWD+ SG + + H + Q+
Sbjct: 462 GHRNKVTCLLYPHQVSARYDQRY---LISGGVDFSVIIWDIFSGEMKHIFCVHGGEITQL 518
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVV-WDCPRGYIAC 686
++ P C SV D SV L SL + + H +P +V+ W Y+
Sbjct: 519 LVPPENCSARVQHCICSVASDHSVGLLSLREKKCIMLASRH-LFPIQVIKWRPSDDYLVV 577
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGI--SMNSISGSVLNGN 744
C D S +++W + TGA +R + G + + + + + +++S+S +N
Sbjct: 578 GCSDGS--------VYVWQMDTGALDRCVMGITAVEILNACDEAVPAAVDSLSHPAVNLK 629
Query: 745 TSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASHVRKGNSGKPSLNTRIGLQRK 804
+++ L ++ ++Q + S S+ KGN K S N+ +
Sbjct: 630 QAMTRRSLAALKN--MAHHKLQTLATNLLASEASD-------KGNLPKYSHNSLM----- 675
Query: 805 KQTIKCSCPYPGIATLSFDLASLMFPYQMHESAAKNGD--KQENFTTMEHGTETAGPNAM 862
Q IK + P I L FD+ +L+ E++ N EN G+ G + +
Sbjct: 676 VQAIKTNLTDPDIHVLFFDVEALIIQLLTEEASRPNTALISPENLQKAS-GSSDKGGSFL 734
Query: 863 TAADGSNGHSMSTDTIE---------------------------EHTWIKSLEECILRFS 895
T + +TI+ E+ KS +L ++
Sbjct: 735 TGKRAAVLFQQVKETIKENIKEHLLDDEEEDEEIMRQRREESDPEYRSSKSKPLTLLEYN 794
Query: 896 LSF---------LHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFPG 943
L+ LH W ++ LD++ + + + +P + V+ GL G ++L PG
Sbjct: 795 LTMDTAKLFMSCLHAWGLNEVLDEVCLDRLGMLKP-HCTVSFGLLSRGGHMSLMLPG 850
|
Homo sapiens (taxid: 9606) |
| >sp|Q9ERH3|WDR7_RAT WD repeat-containing protein 7 OS=Rattus norvegicus GN=Wdr7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 94/431 (21%), Positives = 170/431 (39%), Gaps = 70/431 (16%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH V CL V + L+SG +D S+ IWD+ SG + + H + Q+
Sbjct: 462 GHRNKVTCLLYPHQVSARYDQRY---LISGGVDFSVIIWDIFSGEMKHIFCVHGGEITQL 518
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVV-WDCPRGYIAC 686
++ P C SV D SV L SL + + H +P +V+ W Y+
Sbjct: 519 LVPPENCSARVQHCVCSVASDHSVGLLSLREKKCIMLASRH-LFPIQVIKWRPSDDYLVV 577
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGI--SMNSISGSVLNGN 744
C D S + +W + TGA +R G + + + + + +++S+S +N
Sbjct: 578 GCTDGS--------VCVWQMDTGALDRCAMGITAVEILNACDEAVPAAVDSLSHPAVNLK 629
Query: 745 TSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASHVRKGNSGKPSLNTRIGLQRK 804
+++ L ++ ++Q + S S+ KGN K S N+ +
Sbjct: 630 QAMTRRSLAALKN--MAHHKLQTLATNLLASEASD-------KGNLPKYSHNSLM----- 675
Query: 805 KQTIKCSCPYPGIATLSFDLASLMFPYQMHESAAKNGD--KQENFTTMEHGTETAGPNAM 862
Q IK + P I L FD+ +L+ E++ N EN G+ G + +
Sbjct: 676 VQAIKTNLTDPDIHVLFFDVEALIIQLLTEEASRPNTALISPENLQKAS-GSSDKGGSFL 734
Query: 863 TAADGSNGHSMSTDTIEEHTWI---------------------------KSLEECILRFS 895
T + +TI+E+ KS +L ++
Sbjct: 735 TGKRAAVLFQQVKETIKENIKEHLLDEEEDEEEVMRQRREESDPEYRASKSKPLTLLEYN 794
Query: 896 LSF---------LHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFPGL-K 945
L+ LH W ++ LD++ + + + +P + V+ GL G ++L PG +
Sbjct: 795 LTMDTAKLFMSCLHAWGLNEVLDEVCLDRLGMLKP-HCTVSFGLLSRGGHMSLMLPGYNQ 853
Query: 946 AGLELWKSSSE 956
A +L ++ +E
Sbjct: 854 AAGKLLQAKAE 864
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q922V4|PLRG1_MOUSE Pleiotropic regulator 1 OS=Mus musculus GN=Plrg1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 78/173 (45%), Gaps = 26/173 (15%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V C+A N+ V+GS D +I+IWDL SG L + H++ VR +
Sbjct: 201 GHLGWVRCIAVE---------PGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGV 251
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIAC 686
I+S T P+ S GED V LE +V R + GH A D P +
Sbjct: 252 IVS---TRSPY---LFSCGEDKQVKCWDLEYNKVIRHYHGH--LSAVYGLDLHPTLDVLV 303
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739
C SR S A IWDV+T A L G ++++ C+ I+GS
Sbjct: 304 TC---SRDSTA----RIWDVRTKASVHTLSG-HTNAVATVRCQAAEPQIITGS 348
|
Necessary for spliceosome assembly and for pre-mRNA splicing. Mus musculus (taxid: 10090) |
| >sp|O43660|PLRG1_HUMAN Pleiotropic regulator 1 OS=Homo sapiens GN=PLRG1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 78/175 (44%), Gaps = 30/175 (17%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V C+A N+ V+GS D +I+IWDL SG L + H++ VR +
Sbjct: 202 GHLGWVRCIAVE---------PGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGV 252
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC---PRGYI 684
I+S T P+ S GED V LE +V R + GH V+ P +
Sbjct: 253 IVS---TRSPY---LFSCGEDKQVKCWDLEYNKVIRHYHGH----LSAVYGLDLHPTIDV 302
Query: 685 ACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739
C SR S A IWDV+T A L G ++++ C+ I+GS
Sbjct: 303 LVTC---SRDSTA----RIWDVRTKASVHTLSG-HTNAVATVRCQAAEPQIITGS 349
|
Necessary for spliceosome assembly and for pre-mRNA splicing. Homo sapiens (taxid: 9606) |
| >sp|Q12417|PRP46_YEAST Pre-mRNA-splicing factor PRP46 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP46 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 22/141 (15%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V C+A + NE ++GS D ++++WDL +G L T + HV VR +
Sbjct: 137 GHLGWVRCVAIDPVD--------NEWFITGSNDTTMKVWDLATGKLKTTLAGHVMTVRDV 188
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACL 687
+S HP+ SV ED +V LE ++ R + GH + V IA
Sbjct: 189 AVSD---RHPY---LFSVSEDKTVKCWDLEKNQIIRDYYGHLSGVRTVSIHPTLDLIATA 242
Query: 688 CRDHSRTSDAVDVLFIWDVKT 708
RD V+ +WD++T
Sbjct: 243 GRD--------SVIKLWDMRT 255
|
Involved in pre-mRNA splicing. May also be required for cell cycle progression at G2/M. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q9WUC8|PLRG1_RAT Pleiotropic regulator 1 OS=Rattus norvegicus GN=Plrg1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 78/175 (44%), Gaps = 30/175 (17%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V C+A N+ V+GS D +I+IWDL SG L + H++ VR +
Sbjct: 202 GHLGWVRCIAVE---------PGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGV 252
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC---PRGYI 684
I+S T P+ S GED V LE +V R + GH V+ P +
Sbjct: 253 IVS---TRSPY---LFSCGEDKQVKCWDLEYNKVIRHYHGH----LSAVYGLDLHPTIDV 302
Query: 685 ACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739
C SR S A IWDV+T A L G ++++ C+ I+GS
Sbjct: 303 LVTC---SRDSTA----RIWDVRTKASVHTLSG-HTNAVATVRCQAAEPQIITGS 349
|
Necessary for spliceosome assembly and for pre-mRNA splicing. Rattus norvegicus (taxid: 10116) |
| >sp|Q2KID6|PLRG1_BOVIN Pleiotropic regulator 1 OS=Bos taurus GN=PLRG1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 78/175 (44%), Gaps = 30/175 (17%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V C+A N+ V+GS D +I+IWDL SG L + H++ VR +
Sbjct: 201 GHLGWVRCIAVE---------PGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGV 251
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC---PRGYI 684
I+S T P+ S GED V LE +V R + GH V+ P +
Sbjct: 252 IVS---TRSPY---LFSCGEDKQVKCWDLEYNKVIRHYHGH----LSAVYGLDLHPTIDV 301
Query: 685 ACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739
C SR S A IWDV+T A L G ++++ C+ I+GS
Sbjct: 302 LVTC---SRDSTA----RIWDVRTKASVHTLSG-HTNAVATVRCQAAEPQIITGS 348
|
Necessary for spliceosome assembly and for pre-mRNA splicing. Bos taurus (taxid: 9913) |
| >sp|O13615|PRP46_SCHPO Pre-mRNA-splicing factor prp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 66/153 (43%), Gaps = 23/153 (15%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V C V G N+ +G+ D +I+IWDL SG L + H+A VR +
Sbjct: 161 GHLGWVRC------VDVEPG---NQWFCTGAGDRTIKIWDLASGVLKLTLTGHIATVRGL 211
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACL 687
+SP HP+ S GED V LET +V R + GH + + +
Sbjct: 212 AVSP---RHPY---LFSCGEDKMVKCWDLETNKVIRHYHGHLSGVYALKLHPTLDVLVTA 265
Query: 688 CRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 720
RD V +WD++T VL G S
Sbjct: 266 GRD--------AVARVWDMRTRQNVHVLSGHKS 290
|
Required for both cell cycle progression at G2/M and pre-mRNA splicing. Interacts genetically with the PRP4 kinase. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q5BE22|PRP46_EMENI Pre-mRNA-splicing factor prp46 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=prp46 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 53.9 bits (128), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 24/173 (13%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V LA NE SG+ D +I+IW+L +G L + H++ VR +
Sbjct: 141 GHLGWVRSLAVE---------PNNEWFASGAGDRTIKIWNLATGALRLTLTGHISTVRGL 191
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACL 687
+SP HP+ S GED V LET +V R + GH + + +
Sbjct: 192 AVSP---RHPY---LFSCGEDKMVKCWDLETNKVIRHYHGHLSGVYTLALHPRLDLLVTG 245
Query: 688 CRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSV 740
RD V +WD++T + VL G ++ D C+ I+GS+
Sbjct: 246 GRD--------GVARVWDMRTRSNIHVLSGHTG-TVADVQCQEADPQVITGSL 289
|
Involved in pre-mRNA splicing and required for cell cycle progression at G2/M. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1496 | ||||||
| 225426140 | 1516 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.978 | 0.652 | 0.0 | |
| 297742246 | 1521 | unnamed protein product [Vitis vinifera] | 0.982 | 0.966 | 0.653 | 0.0 | |
| 255537597 | 1525 | hypothetical protein RCOM_1689130 [Ricin | 0.991 | 0.973 | 0.653 | 0.0 | |
| 224053847 | 1500 | predicted protein [Populus trichocarpa] | 0.985 | 0.983 | 0.654 | 0.0 | |
| 356511466 | 1464 | PREDICTED: uncharacterized protein LOC10 | 0.957 | 0.978 | 0.584 | 0.0 | |
| 356527654 | 1452 | PREDICTED: uncharacterized protein LOC10 | 0.955 | 0.984 | 0.586 | 0.0 | |
| 449457668 | 1510 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.983 | 0.974 | 0.577 | 0.0 | |
| 297809371 | 1468 | transducin family protein [Arabidopsis l | 0.964 | 0.982 | 0.576 | 0.0 | |
| 15237124 | 1446 | transducin/WD40 domain-containing protei | 0.946 | 0.979 | 0.559 | 0.0 | |
| 224075018 | 1360 | predicted protein [Populus trichocarpa] | 0.829 | 0.912 | 0.633 | 0.0 |
| >gi|225426140|ref|XP_002272901.1| PREDICTED: uncharacterized protein LOC100260315 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1969 bits (5101), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 997/1528 (65%), Positives = 1172/1528 (76%), Gaps = 44/1528 (2%)
Query: 1 MKCRSVACIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYS---EIKPVA 57
MKCRSVACIWSG PP HR+TA + LT+PP+LYTGGSDGSI+WW+ S + EIKP+A
Sbjct: 1 MKCRSVACIWSGAPPYHRITAAAVLTRPPSLYTGGSDGSIVWWNLSGTDSDPVIEIKPIA 60
Query: 58 MLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKS-SLDNGALISACTDGVLCV 116
MLCGH+AP+ADL IC+P + +NSSNV KS D+GALISACTDGVLC
Sbjct: 61 MLCGHAAPLADLGICFPIV------------DNSSNVKVKSIPADHGALISACTDGVLCT 108
Query: 117 WSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLV 176
WSR SGHCRRRRK+PPWVGSPS+I LP+NPRYVCI C F+D L D HS + VEG
Sbjct: 109 WSRGSGHCRRRRKMPPWVGSPSMIRALPTNPRYVCIACSFMDAVHLFDQHSVDLVEGGEA 168
Query: 177 SEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMV 236
S D+E + PPKCT+VIVD+Y LTIVQTVFHGNLSIGP KFM V+ E+ LMV
Sbjct: 169 SLDRESQYRKPPKCTVVIVDSYSLTIVQTVFHGNLSIGPLKFMAVILSPENCEMQSALMV 228
Query: 237 DSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALV 296
D G+LQ VPI K+ L E G GL KSSS LD I ++G+ EGG +VS+AT G LV
Sbjct: 229 DPYGKLQSVPILKDPTLGGESGAGLHKSSSHLDTTIWEDGLSEGGPVVSIATHGQFFVLV 288
Query: 297 LKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTT 356
+ CIFRLL SG+ IG+I FVDN C E GST+ +++G MFLE A + + C
Sbjct: 289 YRTCCIFRLLASGTAIGKISFVDNHLCFEDGSTHLHIVGGMFLEGNDASSMPRSEDPCDI 348
Query: 357 FYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRME 416
ENF VW++RGSAIVY++SY++ F+++P EIPAVS+P + SI FIQ++ YL R+E
Sbjct: 349 TEENFIVWNDRGSAIVYSVSYLDNLFNFQPLCEIPAVSHPHDARLSISFIQLNHYLFRIE 408
Query: 417 TVCFHVEETSQWRPYISVWSLSQKHSGPGK---QCRMVGEGFSFVDWVNNSTFLDENEG- 472
+VCFH+EE W+P +++WSL Q+H K QC+MVG G F D V ++EG
Sbjct: 409 SVCFHIEEPLLWKPLVTIWSLYQQHDDNRKLCPQCKMVGRGGLFTDSVVGFASFHKSEGH 468
Query: 473 ------SCTGK-SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAP 525
TG+ ++LT + T+P E +++ D + FV KE++VSSSMVISE+F+ P
Sbjct: 469 GHDVGIEPTGRETELTSQKSTIPSLEKMNNICRDDEKYSFVRKEQVVSSSMVISENFHTP 528
Query: 526 YAIVYGFFSGEIEVIQFD-LFERHNSPGAS--LKVNSHVSRQYFLGHTGAVLCLAAHRMV 582
YA+VYGF+SGEIEV +FD F+ S G S ++V+SH S+QYFLGHTGAVLCLAAHRMV
Sbjct: 529 YAVVYGFYSGEIEVARFDTFFQLLESHGQSPCVEVDSHASKQYFLGHTGAVLCLAAHRMV 588
Query: 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642
G + GW+FN VLVSGSMDC+IR+WDL + NLITVMH HVA VRQIIL PP+T+ PWSDCF
Sbjct: 589 GNSNGWNFNHVLVSGSMDCTIRVWDLDTSNLITVMHQHVASVRQIILCPPRTDRPWSDCF 648
Query: 643 LSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLF 702
LSVGEDF VAL SLETLRVERMFPGHP+YPAKVVWD RGYIACLCR++S TSDAVDVLF
Sbjct: 649 LSVGEDFCVALTSLETLRVERMFPGHPSYPAKVVWDGARGYIACLCRNYSGTSDAVDVLF 708
Query: 703 IWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQ 762
IWD+KTG RERVLRGTASHSMFD+F KGI+MNSISGSVLNG+TS SSLLLPI ED + Q
Sbjct: 709 IWDMKTGVRERVLRGTASHSMFDNFFKGINMNSISGSVLNGDTSASSLLLPIIEDASLLQ 768
Query: 763 SQIQNDERGVAFST-----ISEPSAS--HVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYP 815
S ++ +G+A S ISEPS S HV +G+S K + Q K +KCSCP+P
Sbjct: 769 SHFKHSVKGIALSNTITTNISEPSTSQAHVNEGSSMKLISTSSSVFQGYKHPVKCSCPFP 828
Query: 816 GIATLSFDLASLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMST 875
GIATLSFDLASLM HE GDKQ+N E GTET P+ MTA DGS+ +
Sbjct: 829 GIATLSFDLASLMSHCLKHEFIGNGGDKQDNTHMREPGTETLKPHHMTADDGSDLNGTLN 888
Query: 876 DTIEEHTWIKSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKG 935
+TIE H WI SLE +L+FSLSFLHLW+VD ELDKLLIT+MKL+RP+ FIV+ G QG++G
Sbjct: 889 NTIEGHDWISSLERYLLQFSLSFLHLWDVDSELDKLLITDMKLERPQKFIVSPGFQGDRG 948
Query: 936 SLTLTFPGLKAGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFA 995
SLTLTFPGL A LEL KSSSEFCAMRSLTMVSLAQR++SL H SSA SALAAFYTR+FA
Sbjct: 949 SLTLTFPGLGASLELLKSSSEFCAMRSLTMVSLAQRIVSLSHSSSAGCSALAAFYTRHFA 1008
Query: 996 ENFPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSL 1055
E PDIKPP LQLLVSFWQDESEHVRMAARSLFHCAA+RAIP PLCS K + K + S
Sbjct: 1009 EKIPDIKPPSLQLLVSFWQDESEHVRMAARSLFHCAAARAIPPPLCSRKAIDHTKLMIST 1068
Query: 1056 STTGDDEHANSNVEKISANELASDMLPETQGNSLVEESDVLSWLESFEVQDWISCVGGTS 1115
++ +E +SN+E + L SD PET G+S VEE +L+WLESFE QDWISCVGGTS
Sbjct: 1069 NSKRANEDGSSNIENAYRDGLNSDTPPETPGDSQVEECKILAWLESFEEQDWISCVGGTS 1128
Query: 1116 QDAMTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMEST 1175
QDAMTSHIIVAAALAIWYPSLVK LAML V PL+KLVMA NEKYSSTAAELLAEGMEST
Sbjct: 1129 QDAMTSHIIVAAALAIWYPSLVKQNLAMLTVHPLMKLVMAMNEKYSSTAAELLAEGMEST 1188
Query: 1176 WKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADILG 1235
WK CIG EIPRL+GDIFFQIECVS +S N A Q+PA+P +IRETLVG+LLPSLAMADI G
Sbjct: 1189 WKECIGSEIPRLVGDIFFQIECVSGTSGNSAAQNPAIPVTIRETLVGVLLPSLAMADIPG 1248
Query: 1236 FLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMR 1295
FL+V+ESQIWSTASDSPVHLVS+MT+IRVVRGSPRN+ Q LDKVVNFILQTMDPGNSVMR
Sbjct: 1249 FLSVIESQIWSTASDSPVHLVSLMTLIRVVRGSPRNLIQSLDKVVNFILQTMDPGNSVMR 1308
Query: 1296 KTCLHTSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDA 1355
+TCL +SM ALKE+V VFPMV+ ND+ST+LAVGDAIG+I ASIR+YD+QSVTKIKVLDA
Sbjct: 1309 RTCLQSSMTALKEVVRVFPMVAQNDSSTRLAVGDAIGEINNASIRIYDLQSVTKIKVLDA 1368
Query: 1356 SGPPGLPR----ESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRS 1411
S PPGLP S++ TT ISAL FSPDGEGLVAFSEHGLMIRWWSLGS WWEKL R+
Sbjct: 1369 SAPPGLPSLLSGASETTLTTAISALSFSPDGEGLVAFSEHGLMIRWWSLGSAWWEKLGRN 1428
Query: 1412 LVPVQCTKLIFVPPWEGFSPNTARSSIMANIMG---DSNLQEHAGSLSYADNLKLLIQNL 1468
VPVQ TKLIFVPPWEG SPN++RSS+MA+I+G +N QE+ D LK+LI N+
Sbjct: 1429 FVPVQYTKLIFVPPWEGMSPNSSRSSVMASILGHDRQANSQENTKGSGDMDCLKVLIHNI 1488
Query: 1469 DLSYRLEWVGDRKVLLTRHGLELGTFQL 1496
DLSYRLEWVG+R+VL+ RHG ELGTFQL
Sbjct: 1489 DLSYRLEWVGERRVLILRHGRELGTFQL 1516
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742246|emb|CBI34395.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1963 bits (5085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 993/1519 (65%), Positives = 1162/1519 (76%), Gaps = 49/1519 (3%)
Query: 1 MKCRSVACIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDS-SYSEIKPVAML 59
MKCRSVACIWSG PP HR+TA + LT+PP+LYTGGSDGSI+WW+ S + S EIKP+AML
Sbjct: 29 MKCRSVACIWSGAPPYHRITAAAVLTRPPSLYTGGSDGSIVWWNLSGTDSDPEIKPIAML 88
Query: 60 CGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKS-SLDNGALISACTDGVLCVWS 118
CGH+AP+ADL IC+P + +NSSNV KS D+GALISACTDGVLC WS
Sbjct: 89 CGHAAPLADLGICFPIV------------DNSSNVKVKSIPADHGALISACTDGVLCTWS 136
Query: 119 RSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSE 178
R SGHCRRRRK+PPWVGSPS+I LP+NPRYVCI C F+D L D HS + VEG S
Sbjct: 137 RGSGHCRRRRKMPPWVGSPSMIRALPTNPRYVCIACSFMDAVHLFDQHSVDLVEGGEASL 196
Query: 179 DKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDS 238
D+E + PPKCT+VIVD+Y LTIVQTVFHGNLSIGP KFM V+ E+ LMVD
Sbjct: 197 DRESQYRKPPKCTVVIVDSYSLTIVQTVFHGNLSIGPLKFMAVILSPENCEMQSALMVDP 256
Query: 239 VGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLK 298
G+LQ VPI K+ L E G GL KSSS LD I ++G+ EGG +VS+AT G LV +
Sbjct: 257 YGKLQSVPILKDPTLGGESGAGLHKSSSHLDTTIWEDGLSEGGPVVSIATHGQFFVLVYR 316
Query: 299 DHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFY 358
CIFRLL SG+ IG+I FVDN C E GST+ +++G MFLE A + + C
Sbjct: 317 TCCIFRLLASGTAIGKISFVDNHLCFEDGSTHLHIVGGMFLEGNDASSMPRSEDPCDITE 376
Query: 359 ENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETV 418
ENF VW++RGSAIVY++SY++ F+++P EIPAVS+P + SI FIQ++ YL R+E+V
Sbjct: 377 ENFIVWNDRGSAIVYSVSYLDNLFNFQPLCEIPAVSHPHDARLSISFIQLNHYLFRIESV 436
Query: 419 CFHVEETSQWRPYISVWSLSQKHSGPGK---QCRMVGEGFSFVDWVNNSTFLDENEGSCT 475
CFH+EE W+P +++WSL Q+H K QC+MVG G F D V ++EG
Sbjct: 437 CFHIEEPLLWKPLVTIWSLYQQHDDNRKLCPQCKMVGRGGLFTDSVVGFASFHKSEGHGH 496
Query: 476 GKSDLT-FCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFS 534
+ C+D D + FV KE++VSSSMVISE+F+ PYA+VYGF+S
Sbjct: 497 DVEKMNNICRD--------------DEKYSFVRKEQVVSSSMVISENFHTPYAVVYGFYS 542
Query: 535 GEIEVIQFD-LFERHNSPGAS--LKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFN 591
GEIEV +FD F+ S G S ++V+SH S+QYFLGHTGAVLCLAAHRMVG + GW+FN
Sbjct: 543 GEIEVARFDTFFQLLESHGQSPCVEVDSHASKQYFLGHTGAVLCLAAHRMVGNSNGWNFN 602
Query: 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 651
VLVSGSMDC+IR+WDL + NLITVMH HVA VRQIIL PP+T+ PWSDCFLSVGEDF V
Sbjct: 603 HVLVSGSMDCTIRVWDLDTSNLITVMHQHVASVRQIILCPPRTDRPWSDCFLSVGEDFCV 662
Query: 652 ALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711
AL SLETLRVERMFPGHP+YPAKVVWD RGYIACLCR++S TSDAVDVLFIWD+KTG R
Sbjct: 663 ALTSLETLRVERMFPGHPSYPAKVVWDGARGYIACLCRNYSGTSDAVDVLFIWDMKTGVR 722
Query: 712 ERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERG 771
ERVLRGTASHSMFD+F KGI+MNSISGSVLNG+TS SSLLLPI ED + QS ++ +G
Sbjct: 723 ERVLRGTASHSMFDNFFKGINMNSISGSVLNGDTSASSLLLPIIEDASLLQSHFKHSVKG 782
Query: 772 VAFST-----ISEPSAS--HVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGIATLSFDL 824
+A S ISEPS S HV +G+S K + Q K +KCSCP+PGIATLSFDL
Sbjct: 783 IALSNTITTNISEPSTSQAHVNEGSSMKLISTSSSVFQGYKHPVKCSCPFPGIATLSFDL 842
Query: 825 ASLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMSTDTIEEHTWI 884
ASLM HE GDKQ+N E GTET P+ MTA DGS+ + +TIE H WI
Sbjct: 843 ASLMSHCLKHEFIGNGGDKQDNTHMREPGTETLKPHHMTADDGSDLNGTLNNTIEGHDWI 902
Query: 885 KSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFPGL 944
SLE +L+FSLSFLHLW+VD ELDKLLIT+MKL+RP+ FIV+ G QG++GSLTLTFPGL
Sbjct: 903 SSLERYLLQFSLSFLHLWDVDSELDKLLITDMKLERPQKFIVSPGFQGDRGSLTLTFPGL 962
Query: 945 KAGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFAENFPDIKPP 1004
A LEL KSSSEFCAMRSLTMVSLAQR++SL H SSA SALAAFYTR+FAE PDIKPP
Sbjct: 963 GASLELLKSSSEFCAMRSLTMVSLAQRIVSLSHSSSAGCSALAAFYTRHFAEKIPDIKPP 1022
Query: 1005 LLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLSTTGDDEHA 1064
LQLLVSFWQDESEHVRMAARSLFHCAA+RAIP PLCS K + K + S ++ +E
Sbjct: 1023 SLQLLVSFWQDESEHVRMAARSLFHCAAARAIPPPLCSRKAIDHTKLMISTNSKRANEDG 1082
Query: 1065 NSNVEKISANELASDMLPETQGNSLVEESDVLSWLESFEVQDWISCVGGTSQDAMTSHII 1124
+SN+E + L SD PET G+S VEE +L+WLESFE QDWISCVGGTSQDAMTSHII
Sbjct: 1083 SSNIENAYRDGLNSDTPPETPGDSQVEECKILAWLESFEEQDWISCVGGTSQDAMTSHII 1142
Query: 1125 VAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEI 1184
VAAALAIWYPSLVK LAML V PL+KLVMA NEKYSSTAAELLAEGMESTWK CIG EI
Sbjct: 1143 VAAALAIWYPSLVKQNLAMLTVHPLMKLVMAMNEKYSSTAAELLAEGMESTWKECIGSEI 1202
Query: 1185 PRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADILGFLTVVESQI 1244
PRL+GDIFFQIECVS +S N A Q+PA+P +IRETLVG+LLPSLAMADI GFL+V+ESQI
Sbjct: 1203 PRLVGDIFFQIECVSGTSGNSAAQNPAIPVTIRETLVGVLLPSLAMADIPGFLSVIESQI 1262
Query: 1245 WSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMA 1304
WSTASDSPVHLVS+MT+IRVVRGSPRN+ Q LDKVVNFILQTMDPGNSVMR+TCL +SM
Sbjct: 1263 WSTASDSPVHLVSLMTLIRVVRGSPRNLIQSLDKVVNFILQTMDPGNSVMRRTCLQSSMT 1322
Query: 1305 ALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLPR- 1363
ALKE+V VFPMV+ ND+ST+LAVGDAIG+I ASIR+YD+QSVTKIKVLDAS PPGLP
Sbjct: 1323 ALKEVVRVFPMVAQNDSSTRLAVGDAIGEINNASIRIYDLQSVTKIKVLDASAPPGLPSL 1382
Query: 1364 ---ESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRSLVPVQCTKL 1420
S++ TT ISAL FSPDGEGLVAFSEHGLMIRWWSLGS WWEKL R+ VPVQ TKL
Sbjct: 1383 LSGASETTLTTAISALSFSPDGEGLVAFSEHGLMIRWWSLGSAWWEKLGRNFVPVQYTKL 1442
Query: 1421 IFVPPWEGFSPNTARSSIMANIMG---DSNLQEHAGSLSYADNLKLLIQNLDLSYRLEWV 1477
IFVPPWEG SPN++RSS+MA+I+G +N QE+ D LK+LI N+DLSYRLEWV
Sbjct: 1443 IFVPPWEGMSPNSSRSSVMASILGHDRQANSQENTKGSGDMDCLKVLIHNIDLSYRLEWV 1502
Query: 1478 GDRKVLLTRHGLELGTFQL 1496
G+R+VL+ RHG ELGTFQL
Sbjct: 1503 GERRVLILRHGRELGTFQL 1521
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537597|ref|XP_002509865.1| hypothetical protein RCOM_1689130 [Ricinus communis] gi|223549764|gb|EEF51252.1| hypothetical protein RCOM_1689130 [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1925 bits (4986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1004/1537 (65%), Positives = 1171/1537 (76%), Gaps = 53/1537 (3%)
Query: 1 MKCRSVACIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDS-SYSEIKPVAML 59
MKC SVACIW TPPSH+VTAT++L PPTLYTGGSDGSI W+ S S S SEIKPVAML
Sbjct: 1 MKCGSVACIWPDTPPSHKVTATASLNHPPTLYTGGSDGSIFQWNISFSGSNSEIKPVAML 60
Query: 60 CGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDN-GALISACTDGVLCVWS 118
CGH+APIADLSICYP +VS D ++++S N S DN GAL+SAC DGVLCVWS
Sbjct: 61 CGHAAPIADLSICYPVVVSGDDN----ESDHSINGSSTSISDNQGALLSACLDGVLCVWS 116
Query: 119 RSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTN-QLSDHHSFESVEGDLVS 177
R SGHCRRRRKLPPWVGSPS++ TLP + RYVC+GCC T L++ HS +S+EG VS
Sbjct: 117 RGSGHCRRRRKLPPWVGSPSILHTLPMSSRYVCVGCCLSQTTTHLTELHSIDSLEGCEVS 176
Query: 178 EDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVD 237
DKE + P KCT+VIVDTY LTIVQTVFHGNLSIGP KFMDVV GED K+ L+ D
Sbjct: 177 IDKESQHRKPSKCTVVIVDTYSLTIVQTVFHGNLSIGPLKFMDVVLSGEDGEKYSVLLAD 236
Query: 238 SVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVL 297
S G LQLVPI K+S LD E+G+ L KSS + I NG +GG +VS++T GN+IAL+L
Sbjct: 237 SYGGLQLVPILKDSDLDGEDGSDLYKSS---QLGICGNGSSKGGQVVSISTHGNLIALML 293
Query: 298 KDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTF 357
K+ CIF LL S +TIGEI F+ L +EG ST S V+G FLE AEKI NT F
Sbjct: 294 KNRCIFGLLSSDTTIGEISFMGTLLSVEGNSTQSSVVGGFFLEIGDAEKIHNTEEAYEHF 353
Query: 358 YENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMET 417
E F VW + G A+VY ISY+N+ F EP +EIP S+P VK S+ FIQ YL+R+E+
Sbjct: 354 RECFVVWGSAGCAVVYIISYLNDVFKCEPLYEIPVGSHPPNVKLSVSFIQSISYLVRIES 413
Query: 418 VCFHVEETSQWRPYISVWSLSQKHSGPGK--QCRMVGEGFSFVDWVNNSTFLDENEGSCT 475
VCF EE P++++WSL +KH GK +C++ F +W+++ L E G
Sbjct: 414 VCFDAEEPLLCNPHLTIWSLHEKHENNGKLSRCKVFAGNDLFAEWISSFGSLYEINGHGG 473
Query: 476 GKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSG 535
K +F Q ++ E+ +S A RDDFV++ + V+SSM+ISE+ + PYA+VYGF SG
Sbjct: 474 RKKRTSFSQSSISCLENENSEHAIGERDDFVYEGQNVTSSMIISENLFLPYAVVYGFSSG 533
Query: 536 EIEVIQFDL---FERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNE 592
EIEV++FD+ E H S V SHVSRQY GHTGAVLCLAAH+M+G AKGW+F++
Sbjct: 534 EIEVVRFDMILGLESH-SRSPRPDVASHVSRQYITGHTGAVLCLAAHQMLGAAKGWTFSQ 592
Query: 593 VLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 652
VLVSGSMDC+IRIWDL +GNLITVMH HVAPVRQII P +TE PWSDCFLSVGED V+
Sbjct: 593 VLVSGSMDCTIRIWDLDTGNLITVMHQHVAPVRQIIFPPARTERPWSDCFLSVGEDLCVS 652
Query: 653 LASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712
L SLETLRVERMFPGHP+YP KVVWD RGYIACLC+ HS TS+ DVL+IWD+KTGARE
Sbjct: 653 LVSLETLRVERMFPGHPSYPEKVVWDGTRGYIACLCQSHSGTSNIADVLYIWDIKTGARE 712
Query: 713 RVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGV 772
RVLRGTASHSM DHFCKGIS NSISGS+LNGNTSVSSLLLPI EDG F QSQ + ER V
Sbjct: 713 RVLRGTASHSMLDHFCKGISANSISGSILNGNTSVSSLLLPIFEDGGFSQSQHNHLERKV 772
Query: 773 -------AFSTISEPSASHV--RKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGIATLSFD 823
+ + +S P+ S RK NS NT LQ K IKC+CP+PGIATL+FD
Sbjct: 773 TSSNMLSSVTNMSVPTTSKAQGRKENSAS---NTPSLLQ-NKYPIKCTCPFPGIATLTFD 828
Query: 824 LASLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMSTDTIEEHT- 882
LAS+MF Q HES A +KQEN E GT P + + SN +++ST+ ++E
Sbjct: 829 LASMMFSCQRHESIANGSNKQENNNVKEQGTNKLSPCHSPSDENSNQNAISTENLDERDG 888
Query: 883 WIKSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFP 942
W+KS+EE +LRFSLSFLHLWN+D ELDKLL+ +MKLKRPENFI+ASGLQG+KGSLTL FP
Sbjct: 889 WVKSVEELLLRFSLSFLHLWNIDSELDKLLMMDMKLKRPENFILASGLQGDKGSLTLAFP 948
Query: 943 GLKAGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFAENFPDIK 1002
GL A LELWKSSSEFCAMRSL MVS+AQRMISL +SAAS ALAAFYTRN + PDIK
Sbjct: 949 GLSANLELWKSSSEFCAMRSLMMVSIAQRMISLSPSNSAASRALAAFYTRNITDQIPDIK 1008
Query: 1003 PPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLSTTGDDE 1062
PPLLQLLVSFWQDESE+VRMAAR+LFHCAASRAIP PLCS + AK V SLS G++E
Sbjct: 1009 PPLLQLLVSFWQDESEYVRMAARTLFHCAASRAIPSPLCSQRASDHAKLVRSLSEVGENE 1068
Query: 1063 HANSNVEKISANELASDMLPETQGNSLVEE----------------SDVLSWLESFEVQD 1106
S V +ISAN L+SDM P++Q S EE S +L+WLESFEV D
Sbjct: 1069 GEASEVGEISANVLSSDMAPKSQEISKAEEPYYESPEKHQITEAEKSKILAWLESFEVPD 1128
Query: 1107 WISCVGGTSQDAMTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAE 1166
WISCVGGTSQDAMTSHIIVAAAL IWYPSLVKP+LA+LVV PLIKLVMA N KYSSTAAE
Sbjct: 1129 WISCVGGTSQDAMTSHIIVAAALGIWYPSLVKPSLAVLVVHPLIKLVMAMNGKYSSTAAE 1188
Query: 1167 LLAEGMESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLP 1226
LLAEGME TWK C+G EI RLI DIFFQIECVS+ SA AG PAVP+SIRETL+G+LLP
Sbjct: 1189 LLAEGMEDTWKACLGPEISRLIADIFFQIECVSSPSAISAGPDPAVPSSIRETLIGVLLP 1248
Query: 1227 SLAMADILGFLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQT 1286
SLAMADILGFLTV+E QIWSTASDSPVHLVS+ T+IRVV GSPR +AQ+LDKVV+FIL T
Sbjct: 1249 SLAMADILGFLTVIERQIWSTASDSPVHLVSLTTLIRVVHGSPRCLAQYLDKVVSFILHT 1308
Query: 1287 MDPGNSVMRKTCLHTSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQS 1346
MDPGNSVMRKTCL +SM ALKE+V VFPMV+LNDTST+LAVGDA+G++ ASI VYDMQS
Sbjct: 1309 MDPGNSVMRKTCLQSSMTALKEVVRVFPMVALNDTSTRLAVGDAVGEVNDASISVYDMQS 1368
Query: 1347 VTKIKVLDASGPPGLPR----ESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGS 1402
+TKIKVLDASGPPGLP S++ TTVISAL FSPDG+GLVAFSEHGLMIRWWSLGS
Sbjct: 1369 ITKIKVLDASGPPGLPTLLSGASETAVTTVISALSFSPDGDGLVAFSEHGLMIRWWSLGS 1428
Query: 1403 VWWEKLSRSLVPVQCTKLIFVPPWEGFSPNTARSSIMANIMG---DSNLQEHAGSLSYAD 1459
VWWEKLSR+LVPVQCTKLIFVPPWEGFSPN +RSS+M NIMG +NLQE+ ++AD
Sbjct: 1429 VWWEKLSRNLVPVQCTKLIFVPPWEGFSPNFSRSSVMINIMGHDRQTNLQENTRGSNHAD 1488
Query: 1460 NLKLLIQNLDLSYRLEWVGDRKVLLTRHGLELGTFQL 1496
NLK+++ NLDLSYRLEWV RKVLL+RHG+ELGTF L
Sbjct: 1489 NLKMVVHNLDLSYRLEWVSKRKVLLSRHGMELGTFPL 1525
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224053847|ref|XP_002298009.1| predicted protein [Populus trichocarpa] gi|222845267|gb|EEE82814.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1917 bits (4965), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 995/1521 (65%), Positives = 1153/1521 (75%), Gaps = 46/1521 (3%)
Query: 1 MKCRSVACIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDS-SYSEIKPVAML 59
MKCRSVACIW TPPSH+VTA+++L PPTLYTGGSDGSIL W+ S S S +EIKPVAML
Sbjct: 1 MKCRSVACIWPDTPPSHKVTASASLNHPPTLYTGGSDGSILCWNLSSSDSNTEIKPVAML 60
Query: 60 CGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDN-GALISACTDGVLCVWS 118
CGH+APIADLSIC P +V+ E K + SSN G S+ D ALISAC GVLCVWS
Sbjct: 61 CGHAAPIADLSICCPMVVT----GEDTKTKCSSNGDGSSASDTYDALISACKFGVLCVWS 116
Query: 119 RSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSE 178
R SGHCRRRRKLPPWVGSP + TLP++ RYVCIGCCFID SD HS +S+EG VS
Sbjct: 117 RGSGHCRRRRKLPPWVGSPCFVRTLPTSSRYVCIGCCFIDAAHSSDRHSIDSLEGGEVSV 176
Query: 179 DKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDS 238
DK PK T+VIVDTY LTIVQ+VFHGNLSIG FMDVV LGED KH + DS
Sbjct: 177 DKGCLPGKHPKSTVVIVDTYSLTIVQSVFHGNLSIGRLDFMDVVLLGEDGEKHSVFIADS 236
Query: 239 VGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLK 298
G+++LVPI KES+ + G+GL + SSQL++ NG+ + G +VS AT GN+IALVLK
Sbjct: 237 SGKVELVPILKESNPVGDGGSGL-RKSSQLEVVNWGNGLSKEGQVVSSATRGNLIALVLK 295
Query: 299 DHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFY 358
CIFRLL S +TIGE F +++ C+E S+V+G MFLE + E E F+
Sbjct: 296 TRCIFRLLTSETTIGETSFAEDILCVEDHFAQSHVLGGMFLE--IGEAGEMQSAQHDNFF 353
Query: 359 ENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETV 418
+FAVW++RGSAIVY +SY+N F E +EIPA SYP+ V+ FIQ++ YLLR+E+V
Sbjct: 354 GHFAVWNSRGSAIVYIVSYLNNVFKSETLWEIPAASYPADVRLLFSFIQLNNYLLRIESV 413
Query: 419 CFHVEETSQWRPYISVWSLSQKHSGPGK---QCRMVGEGFSFVDWVNNSTFLD-ENEGSC 474
CF EE QW+P++++WSL +KH GK Q +M+GE F DWV+NS+ L N+G
Sbjct: 414 CFDDEEPLQWKPHVTIWSLCRKHDNHGKSSQQRKMLGESDFFADWVSNSSLLGINNQG-- 471
Query: 475 TGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFS 534
GK +T Q +VP S +++ A D FV K VSSSMV+SE+ + PYA+VYGFF+
Sbjct: 472 VGKMRITSAQSSVPNSRTENNKHA-DESFGFVCNGKTVSSSMVVSENHFFPYAVVYGFFN 530
Query: 535 GEIEVIQFDLFERHNSPGASLK--VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNE 592
GEIEV++FD+ +S G S + V+S VSRQYF GHTGAVLCLAAHRM+G A+GWSF+
Sbjct: 531 GEIEVVRFDMLLEPDSHGESPRNDVDSPVSRQYFSGHTGAVLCLAAHRMLGAARGWSFSH 590
Query: 593 VLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 652
VLVSGSMDC++RIWDL +GNLITVMH H+A VRQII +TE PW DCFLSVGED VA
Sbjct: 591 VLVSGSMDCTVRIWDLDTGNLITVMHQHIASVRQIIFPSARTERPWGDCFLSVGEDSCVA 650
Query: 653 LASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712
L SLETLRVERMFPGHP+Y KVVWD RGYIACLC+ H SD VD L+IWDVKTGARE
Sbjct: 651 LTSLETLRVERMFPGHPSYLEKVVWDGARGYIACLCQSHLGLSDTVDALYIWDVKTGARE 710
Query: 713 RVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGV 772
RVL GTASHSMFDHFCK IS++SISGS+LNGNTSVSSLLLP+ ED TF QS + E+ V
Sbjct: 711 RVLHGTASHSMFDHFCKEISVHSISGSILNGNTSVSSLLLPVIEDETFSQSHSKLLEKKV 770
Query: 773 A-------FSTISEPSASH--VRKGN-SGKPSLNTRIGLQRKKQTIKCSCPYPGIATLSF 822
+ +P+AS V+KG PS LQ K I C+CP+PGIA LSF
Sbjct: 771 SSPRMMSNMKNAMDPTASQGQVKKGILPTTPSF-----LQMNKHAIGCTCPFPGIAALSF 825
Query: 823 DLASLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMSTDTIEEHT 882
DLASLMFP+Q HE AA KQEN E GT T M GS+ + STDTIEEH
Sbjct: 826 DLASLMFPFQKHEPAANGVVKQENIDVKEQGTSTPRTQDMNFDGGSDKNGTSTDTIEEHD 885
Query: 883 WIKSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFP 942
WI+SLEE LRFSLSFLHLWN+D ELDKLL+TEMKL RPEN I+ASGLQG+KGSLTL+FP
Sbjct: 886 WIRSLEEYSLRFSLSFLHLWNLDSELDKLLVTEMKLNRPENLIIASGLQGDKGSLTLSFP 945
Query: 943 GLKAGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFAENFPDIK 1002
GL + LELWKSSSEFCAMRSLTMVS+AQRMISL SS +SALAAFYTR+FA+ PDIK
Sbjct: 946 GLSSILELWKSSSEFCAMRSLTMVSIAQRMISLSRCSSPVTSALAAFYTRSFADKIPDIK 1005
Query: 1003 PPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLSTTGDDE 1062
PPLLQLLVSFWQDESEHVRMAAR+LFHCAASR+IPLPLC K A K V SLS D+E
Sbjct: 1006 PPLLQLLVSFWQDESEHVRMAARTLFHCAASRSIPLPLCGKKMNAHRKLVRSLSEIRDNE 1065
Query: 1063 HANSNVEKISANELASDMLPETQGNSLVEESDVLSWLESFEVQDWISCVGGTSQDAMTSH 1122
SN + L E QG + S +L WLESFE+QDWISCVGGTSQDAMTSH
Sbjct: 1066 AEVSNAVEFPDKSL------EKQGITEAARSKILDWLESFEMQDWISCVGGTSQDAMTSH 1119
Query: 1123 IIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGF 1182
+IVAAALA+WYPSLVKP++A LV PLIKLVM NE YSSTAAELLAEGMESTW+ CI
Sbjct: 1120 VIVAAALAVWYPSLVKPSIATLVAHPLIKLVMDMNETYSSTAAELLAEGMESTWEACISS 1179
Query: 1183 EIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADILGFLTVVES 1242
EIPRLIGDIF+QIECVS SAN AG H +VP+ IRETLVGIL PSLAMADI GFLTV+E
Sbjct: 1180 EIPRLIGDIFYQIECVSGQSANSAGHHSSVPSFIRETLVGILFPSLAMADIPGFLTVIEG 1239
Query: 1243 QIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTS 1302
QIWSTASDSPVHLVS+ T+IRVVRGSPR++AQ+LDKVV+FIL TMDPGNS+MRKTCL +S
Sbjct: 1240 QIWSTASDSPVHLVSLTTLIRVVRGSPRHLAQYLDKVVSFILHTMDPGNSIMRKTCLQSS 1299
Query: 1303 MAALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLP 1362
M ALKE+V FPMV+LNDTST+LAVGDAIG I A+I VYDMQSVTKIKVLDA GPPGLP
Sbjct: 1300 MTALKEMVQAFPMVALNDTSTRLAVGDAIGMINNATISVYDMQSVTKIKVLDACGPPGLP 1359
Query: 1363 R----ESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRSLVPVQCT 1418
S+ TVISAL F+PDGEGLVAFSEHGLMIRWWSLGSVWWEKLSR+L PVQCT
Sbjct: 1360 NLLSGASEMAVITVISALSFAPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRNLAPVQCT 1419
Query: 1419 KLIFVPPWEGFSPNTARSSIMANIMG---DSNLQEHAGSLSYADNLKLLIQNLDLSYRLE 1475
KLIFVPPWEGFSPN++RSSIMA+I+G +NLQE A +YADNLKLLI NLDLSY+L+
Sbjct: 1420 KLIFVPPWEGFSPNSSRSSIMASILGHDNQANLQEKARDSTYADNLKLLIHNLDLSYQLQ 1479
Query: 1476 WVGDRKVLLTRHGLELGTFQL 1496
WVG+RKVLL+RHGLELG F L
Sbjct: 1480 WVGERKVLLSRHGLELGAFPL 1500
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511466|ref|XP_003524447.1| PREDICTED: uncharacterized protein LOC100816646 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1678 bits (4346), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 892/1527 (58%), Positives = 1082/1527 (70%), Gaps = 94/1527 (6%)
Query: 1 MKCRSVACIWSGTPPSHRVTATSALTQPPT--LYTGGSDGSILWWSFSDSSYS---EIKP 55
MKCRSVACIWSGTP HRVTA +ALT+PPT YT GSDGS++WW+ S+S+ + ++K
Sbjct: 1 MKCRSVACIWSGTPFPHRVTAVAALTEPPTPTFYTAGSDGSVIWWTLSNSTSTSPPQLKA 60
Query: 56 VAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALISACTDGVLC 115
V +LCGH+API DL++C P + +G G S ALISAC DG LC
Sbjct: 61 VGVLCGHAAPITDLAVCSPVADAENG-------------YGPSGSKFSALISACCDGFLC 107
Query: 116 VWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDL 175
VWS++SGHCR RRKLPPWVG+P +I TLPS PRYVCI C SFE+ EG +
Sbjct: 108 VWSKNSGHCRCRRKLPPWVGTPRIIRTLPSTPRYVCIAC------------SFEASEGVI 155
Query: 176 VSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLM 235
D+E + PPKCT++IVD+Y L+I QTVFHG+LSIGP +FM +V LG+D ++ +
Sbjct: 156 ---DRETKPRKPPKCTILIVDSYSLSITQTVFHGSLSIGPIRFMALV-LGDDEKRNSVFV 211
Query: 236 VDSVGRLQLVPISKESHLDREEGNGLCKS---SSQLDMAILQNGVVEGGHLVSVATCGNI 292
DS GR Q V IS++ +G L S QL+ + G+ +VSV T GN+
Sbjct: 212 ADSAGRQQTVLISED------QGESLASSLGDKGQLESSFCYEGLSGVEQIVSVLTYGNV 265
Query: 293 IALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMG 352
+A +L+D C+FRLL S IGE+ F+D+L CL+ GS Y IG +FLE I N
Sbjct: 266 VAFILRDRCVFRLLNGDSVIGEVSFLDSLLCLDQGSAQMYAIGGIFLESDYVGNICNANE 325
Query: 353 VCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYL 412
+ FAVW+N G A++Y + Y N+ F E H +IP Y ++ S+ F+Q++ +L
Sbjct: 326 YGNSITVQFAVWNNVGYAVIYNVLYQNDVFKCELHSDIPGTHYQPDMRLSVFFLQVNQHL 385
Query: 413 LRMETVCFHVEETSQWRPYISVWSLSQKHSGPGK---QCRMVGEGFSFVDWVNNSTFLDE 469
+ +++VC + EE WRP ++WSL PG+ QCR + +G SF+DW +NS+ L
Sbjct: 386 VCVKSVCLNHEEPLLWRPLATIWSLHDFDDEPGRLYRQCRRISDGISFIDWFDNSSQLKG 445
Query: 470 NEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIV 529
+G T TF P S+ VD+ + + +K K+VSSSM+ISE+ + PYA+V
Sbjct: 446 LDGLETMP---TF--GVSPSSDDVDNTHVDSMSNYYAYKGKVVSSSMIISENLFTPYAVV 500
Query: 530 YGFFSGEIEVIQFDLFERHNSPGASLKVN--SHVSRQYFLGHTGAVLCLAAHRMVGTAKG 587
YGF SGEIEV++FDLF+ + AS + S +Q F GHTGAVLCLAAH+ +G+AK
Sbjct: 501 YGFLSGEIEVVRFDLFQGISLDNASSNPDEKSTACKQCFSGHTGAVLCLAAHQKMGSAKS 560
Query: 588 WSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647
W+F VLVSGSMDC+IRIWDL +G+LI VMHHHVAPVRQIIL P T HPWSDCFLSVGE
Sbjct: 561 WNFKRVLVSGSMDCTIRIWDLDTGSLIMVMHHHVAPVRQIILPPSLTVHPWSDCFLSVGE 620
Query: 648 DFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707
D VAL SLETLRVERMFPGH NYP+KV+WD RGYI+CLC+ H TSDA D+L IWDVK
Sbjct: 621 DACVALVSLETLRVERMFPGHMNYPSKVLWDGARGYISCLCQTHYGTSDATDILCIWDVK 680
Query: 708 TGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767
TG+RERVLRGTA+HSMFDHFCK ISMNSISG++LNGNTSVSSLLLPI +D S + N
Sbjct: 681 TGSRERVLRGTAAHSMFDHFCKSISMNSISGTLLNGNTSVSSLLLPIVDDARLSNSPL-N 739
Query: 768 DERGVAFSTISEP----------SASHVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGI 817
+ ST S P S ++ KGN KP+ ++ IGL K IKCS P+PGI
Sbjct: 740 RSDNLLTSTRSSPNIPNMTELNSSKTNAGKGNPVKPNSSSLIGLLSSKLPIKCSSPFPGI 799
Query: 818 ATLSFDLASLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMSTDT 877
+L FDLASLM Y +ES G K N + G + P+ +T
Sbjct: 800 VSLCFDLASLMLSYPKNESMENGGGKPVNINMKQQGVQEQNPSYHNP-----------ET 848
Query: 878 IEEHTWIKSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSL 937
+E H + EE +LR+SLSFLHLW+VDRELD LLI+EMKL+RPENFIVASGLQG+KGSL
Sbjct: 849 VEGHDLVSLFEEYLLRYSLSFLHLWSVDRELDNLLISEMKLRRPENFIVASGLQGDKGSL 908
Query: 938 TLTFPGLKAGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFAEN 997
TLTFP A LELWKSSSEFCAMRSLTMVSLAQR+ISL H SAASSALAAFYTRNF EN
Sbjct: 909 TLTFPAQSATLELWKSSSEFCAMRSLTMVSLAQRLISLSHSGSAASSALAAFYTRNFLEN 968
Query: 998 FPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLST 1057
FPD+KPP LQLLV+FWQDESEHVRMAARS+FHCAAS IPLPLC+ K ++ + S +
Sbjct: 969 FPDVKPPSLQLLVAFWQDESEHVRMAARSIFHCAASHCIPLPLCNSKP-TESNNMSSQTG 1027
Query: 1058 TGDDEHANSNVEKISANELASDMLPETQGNSLVEESDVLSWLESFEVQDWISCVGGTSQD 1117
+ D N E IS E E QG S EES +L+WLESFEVQDW SCVGGTSQD
Sbjct: 1028 SRDKHLGNMTEESISPKE-------EKQGISQDEESKILAWLESFEVQDWNSCVGGTSQD 1080
Query: 1118 AMTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWK 1177
AMTSHIIVA ALAIWYPSLVKP+LAMLVV PL+KL MA NEKYSSTAAELLAEGMESTWK
Sbjct: 1081 AMTSHIIVAGALAIWYPSLVKPSLAMLVVHPLMKLAMAMNEKYSSTAAELLAEGMESTWK 1140
Query: 1178 TCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADILGFL 1237
CI EIPRLIGDIFFQ+E S +L + SI++TLV +LLPSLAMADI GFL
Sbjct: 1141 ECIVSEIPRLIGDIFFQVEL---SGPSLVKEISDASFSIKKTLVEVLLPSLAMADIPGFL 1197
Query: 1238 TVVESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKT 1297
TV+ESQIWSTASDSPVH+VS++T+IR++RGSP+N+AQ+LDKVVNFILQT+DP NSVMRKT
Sbjct: 1198 TVIESQIWSTASDSPVHMVSLLTLIRIMRGSPKNLAQYLDKVVNFILQTIDPSNSVMRKT 1257
Query: 1298 CLHTSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASG 1357
C +SM LKE+V V+PMV++ D+ TKLAVGD IG+I A IRVYDMQSVT +KVLDASG
Sbjct: 1258 CFQSSMTTLKEVVRVYPMVAVTDSWTKLAVGDVIGEINNAGIRVYDMQSVTMVKVLDASG 1317
Query: 1358 PPGLPR-----ESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRSL 1412
PPGLP S ++ TT ISAL FSPDGEGLVAFSE+GL+IRWWSLGS WWEKLSR+
Sbjct: 1318 PPGLPTLLPAATSGTMLTTAISALSFSPDGEGLVAFSENGLLIRWWSLGSFWWEKLSRNF 1377
Query: 1413 VPVQCTKLIFVPPWEGFSPNTARSSIMANIMGDS---NLQEHAGSLSYADNLKLLIQNLD 1469
VPVQCTKLIFVPPWEGFSPN++RSSIMANI+ N Q++ ++ D+ K + +LD
Sbjct: 1378 VPVQCTKLIFVPPWEGFSPNSSRSSIMANILETDRQMNFQDNVRDSNHGDSPKHALHSLD 1437
Query: 1470 LSYRLEWVGDRKVLLTRHGLELGTFQL 1496
LSYRLEWV RKVLLTRHG +LGTFQL
Sbjct: 1438 LSYRLEWVEGRKVLLTRHGHQLGTFQL 1464
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356527654|ref|XP_003532423.1| PREDICTED: uncharacterized protein LOC100818675 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1660 bits (4300), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 891/1519 (58%), Positives = 1070/1519 (70%), Gaps = 90/1519 (5%)
Query: 1 MKCRSVACIWSGTPPSHRVTATSALTQPPT--LYTGGSDGSILWWSFS-----DSSYSEI 53
MKCRSVACIWS TP HRVTA +AL +PPT YT GS+GS++WW+ S +S ++
Sbjct: 1 MKCRSVACIWSDTPFPHRVTAVAALPEPPTPTFYTAGSNGSVIWWTLSTSPRANSILQQL 60
Query: 54 KPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALISACTDGV 113
+ V +LCGH+API DL++C P AEH + G+S ALISAC DG
Sbjct: 61 RAVGVLCGHAAPITDLAVCSPV-----ADAEHVYGPS-----GRSKF--SALISACCDGF 108
Query: 114 LCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEG 173
LCVWS++SGHCR RRKLPPWVG+P +I TLPS PRYVCI C SFE EG
Sbjct: 109 LCVWSKNSGHCRCRRKLPPWVGTPRIIRTLPSTPRYVCIAC------------SFEGNEG 156
Query: 174 DLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYG 233
+ D+E + PPKCT++IVD+Y L+I QTVFHG+LSIGP FM +V LG+D ++
Sbjct: 157 VI---DRETQPRKPPKCTILIVDSYSLSITQTVFHGSLSIGPISFMALV-LGDDEKRNSV 212
Query: 234 LMVDSVGRLQLVPISKESHLDREEGNGLCKS---SSQLDMAILQNGVVEGGHLVSVATCG 290
+ DS GR Q V IS++ G L S Q + + G+ +VSV T G
Sbjct: 213 FVADSAGRQQTVLISED------RGESLVSSLGDKGQSESSFCYEGLSGVEQIVSVLTYG 266
Query: 291 NIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENT 350
N +A +LKD C+FRLL S IGE+ FVD+LF L+ GST Y IG +FLE + N
Sbjct: 267 NAVAFILKDRCVFRLLNGDSVIGEVSFVDSLFGLDRGSTQMYAIGGIFLESDDVGNMCNA 326
Query: 351 MGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSL 410
+ F VW+N G A++Y + Y N+ F EPH EIP Y ++ S+ F+Q++
Sbjct: 327 NEYGNSITVQFVVWNNVGHAVIYNVLYQNDVFKCEPHSEIPGTHYQPDMRLSVFFLQVNQ 386
Query: 411 YLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGK---QCRMVGEGFSFVDWVNNSTFL 467
+L+ +++VC + EE WRP ++WS PG+ QCRM+ +G SF++W ST L
Sbjct: 387 HLVCVKSVCLNHEEPLLWRPLATIWSTHDCDDEPGRLYRQCRMISDGVSFINWFEKSTQL 446
Query: 468 DENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYA 527
+G T TF P S+ VD+ + + +K K+VSSSM+ISE+ + PYA
Sbjct: 447 QGLDGLETTP---TF--GVSPSSDDVDNTHVDSMSNYYAYKGKVVSSSMIISENLFTPYA 501
Query: 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVN--SHVSRQYFLGHTGAVLCLAAHRMVGTA 585
+VYGF SGEIEV++FDLF AS + S +Q F GHTGAVLCLAAH+M+G A
Sbjct: 502 VVYGFLSGEIEVVRFDLFHGICLDDASSNPDEKSTACKQCFSGHTGAVLCLAAHQMMGRA 561
Query: 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645
K W+F +VLVSGSMDC+IRIWDL +G+LI VMHHHVAPVRQIIL P T +PWSDCFLSV
Sbjct: 562 KSWNFKQVLVSGSMDCTIRIWDLDTGSLIMVMHHHVAPVRQIILPPSLTVYPWSDCFLSV 621
Query: 646 GEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705
GED VAL SLETLRVERMFPGH NYP+KV+WD RGYI+CLC+ H TSDA D+L+IWD
Sbjct: 622 GEDACVALVSLETLRVERMFPGHMNYPSKVLWDGARGYISCLCQTHYGTSDATDLLYIWD 681
Query: 706 VKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765
VKTG+RERVLRGTA+HSMFDHFCK ISMNSISG++LNGNTSVSSLLLPI +D F S +
Sbjct: 682 VKTGSRERVLRGTAAHSMFDHFCKSISMNSISGTLLNGNTSVSSLLLPIVDDAKFSNSPL 741
Query: 766 QNDERGVAFSTISEPSASHVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGIATLSFDLA 825
N + S+ S P NS + ++ IGL K IKCS P+PGI +L FDLA
Sbjct: 742 -NRSDNLLTSSRSSPR-------NSVMQNSSSLIGLLSSKLPIKCSSPFPGIVSLCFDLA 793
Query: 826 SLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMSTDTIEEHTWIK 885
SLM Y +ES G K N + G + P+ + +T+E H +
Sbjct: 794 SLMLSYPKNESMENGGGKPVNINMKQQGVQEQNPSY-----------HNPETVEGHDLVS 842
Query: 886 SLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFPGLK 945
EE +LRFSLSFLHLW+VDRELD LLI+EMKL+RPENFIVASGLQG+KGSLTLTFP
Sbjct: 843 LFEEYLLRFSLSFLHLWSVDRELDNLLISEMKLRRPENFIVASGLQGDKGSLTLTFPAQS 902
Query: 946 AGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFAENFPDIKPPL 1005
A LELWKSSSEFCAMRSLTMVSLAQR+ISL H SAASSALAAFYTRNF ENFPD+KPP
Sbjct: 903 ATLELWKSSSEFCAMRSLTMVSLAQRLISLSHSGSAASSALAAFYTRNFLENFPDVKPPS 962
Query: 1006 LQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLSTTGDDEHAN 1065
LQLLV+FWQDESEHVRMAARS+FHCAAS AIPLPLC K D+ + S + + D N
Sbjct: 963 LQLLVAFWQDESEHVRMAARSIFHCAASHAIPLPLCYSKP-TDSNNMGSQTGSRDKHLGN 1021
Query: 1066 SNVEKISANELASDMLPETQGNSLVEESDVLSWLESFEVQDWISCVGGTSQDAMTSHIIV 1125
E IS E QG S EES +L+WLESFEVQDWISCVGGTSQDAMTSHIIV
Sbjct: 1022 MAEESISPKA-------ENQGISQDEESKILAWLESFEVQDWISCVGGTSQDAMTSHIIV 1074
Query: 1126 AAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEIP 1185
A ALAIWYPSLVKP+L MLVV PL+KL MA NEKYSSTAAELLAEGMESTWK CI EIP
Sbjct: 1075 AGALAIWYPSLVKPSLGMLVVHPLMKLAMAMNEKYSSTAAELLAEGMESTWKECIVSEIP 1134
Query: 1186 RLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADILGFLTVVESQIW 1245
RLIGDIFFQ+E +S S+ L + SI++TLV +LLPSLAMADI GFLTV+ESQIW
Sbjct: 1135 RLIGDIFFQVE-LSGPSSKLVKEISDASFSIKKTLVEVLLPSLAMADIPGFLTVIESQIW 1193
Query: 1246 STASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMAA 1305
STASDSPVH+VS++T+IR++RGSP+N AQ+LDKVVNFILQT+DP NSVMRK C +SM
Sbjct: 1194 STASDSPVHMVSLLTLIRIMRGSPKNSAQYLDKVVNFILQTIDPSNSVMRKACFQSSMTT 1253
Query: 1306 LKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLPR-- 1363
LKE+V V+PMV++ D+ TKLAVGD IG+I A IRVYDMQSVT +KVLDASGPPGLP
Sbjct: 1254 LKEVVRVYPMVAVTDSWTKLAVGDVIGEINNARIRVYDMQSVTMVKVLDASGPPGLPTLL 1313
Query: 1364 ---ESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRSLVPVQCTKL 1420
S ++ TT ISAL FSPDGEGLVAFSE+GL+IRWWSLGS WWEKLSR+ VPVQCTKL
Sbjct: 1314 PAATSGTMLTTAISALSFSPDGEGLVAFSENGLLIRWWSLGSFWWEKLSRNFVPVQCTKL 1373
Query: 1421 IFVPPWEGFSPNTARSSIMANIMGDS---NLQEHAGSLSYADNLKLLIQNLDLSYRLEWV 1477
IFVPPWEGFSPN++RSSIMANI+ N Q+++ ++ D+ K L+ LDLSYRLEWV
Sbjct: 1374 IFVPPWEGFSPNSSRSSIMANILETDRQMNFQDNSRDSNHGDSPKHLLHTLDLSYRLEWV 1433
Query: 1478 GDRKVLLTRHGLELGTFQL 1496
RKVLLTRHG ELGTFQL
Sbjct: 1434 EGRKVLLTRHGHELGTFQL 1452
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457668|ref|XP_004146570.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101221785 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1655 bits (4287), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 886/1535 (57%), Positives = 1101/1535 (71%), Gaps = 64/1535 (4%)
Query: 1 MKCRSVACIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWW--SFSDSS--------- 49
MKC++VACIWSGTP SHRVTAT+ L+QPPTLYTGGSDGSI+WW S SDSS
Sbjct: 1 MKCQTVACIWSGTPLSHRVTATAVLSQPPTLYTGGSDGSIIWWKISISDSSTVTQLDNYF 60
Query: 50 --YSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALIS 107
EI+PVA+LCGH+A IADL ICYP ++S GK + +S+ + +S GAL+S
Sbjct: 61 SFRXEIEPVAVLCGHAATIADLGICYP-VISGTGKTD----ISSNAEVNSTSEICGALVS 115
Query: 108 ACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHS 167
AC+DGVLC+WSR SGHCRRRRKLP WVGSPSV+ T+PS PRYVC+GC F D+ SD+HS
Sbjct: 116 ACSDGVLCIWSRRSGHCRRRRKLPAWVGSPSVVRTIPSKPRYVCVGCYFTDSVHSSDNHS 175
Query: 168 FESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGED 227
+S E VS D+E K KC++VIVDTY LTIV+TV HGNLSIG ++M +VS
Sbjct: 176 VDSAERIDVSADREHQHKKHSKCSVVIVDTYTLTIVETVLHGNLSIGSLRYMAIVSPLTG 235
Query: 228 MGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVA 287
G + +VDS GRLQ++ +SKES D+E ++SSQ+++ + + + E G +VSVA
Sbjct: 236 EGNYSAAIVDSFGRLQMISLSKES--DQEVDQASLQNSSQVNIPVWTDVLSERGQVVSVA 293
Query: 288 TCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKI 347
N+IA +L DHC+F+LL SG +GE+ F D++F + ++ ++V GAMFL+ I
Sbjct: 294 IQHNVIAFLLPDHCVFKLLLSGLVVGELSFTDSIFGINEFTSEAHVSGAMFLDGRDELNI 353
Query: 348 ENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQ 407
N TF E FAVW++ G A++Y IS N+ F+Y+P +EIPA S V FSI F+Q
Sbjct: 354 RNNQECHETFVEIFAVWNSIGHAVIYTISITNKIFEYKPLYEIPASCNSSSVGFSISFVQ 413
Query: 408 MSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGK--QCRMVGEGFSFVDWVNNST 465
++ + +R+E++ +EE W I++W+L +K GK +CRMVGE S +W+ +ST
Sbjct: 414 LNQHFIRIESLSSQIEEPFHWTSNITIWALQEKQPTHGKLLKCRMVGESSSLTEWIQDST 473
Query: 466 FLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAP 525
F E G S L + S+ V+ GD ++FV K +I+SSSMVIS+S P
Sbjct: 474 FHSEFVGKYVVGSGL----KSDSSSDSVNDLYFGDC-NNFVQKGQIISSSMVISDSLSTP 528
Query: 526 YAIVYGFFSGEIEVIQFDLFERHNSPGAS--LKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583
YA+VYG+ SG++++++ DLF+ +S AS +VN HV + Y GHTG VLCLA HR+V
Sbjct: 529 YAVVYGYSSGDVQILKLDLFQGLSSHRASPHCEVN-HVPQLYLSGHTGPVLCLAVHRLVS 587
Query: 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFL 643
+ L+SGSMDC+IRIW L SGNL+ VMHHHVAPVRQIIL P T+HPWSDCFL
Sbjct: 588 KNN----EQFLLSGSMDCTIRIWGLESGNLVMVMHHHVAPVRQIILPPAHTDHPWSDCFL 643
Query: 644 SVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFI 703
SVGED VALASLETL+VERMFPGH NYP KVVWD RGYIAC+C +HS TSD VD+L+I
Sbjct: 644 SVGEDSCVALASLETLKVERMFPGHRNYPEKVVWDSVRGYIACMCSNHSSTSDTVDILYI 703
Query: 704 WDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQS 763
WD+KTGARER++ GTAS S+FD+FCKGI S SGS+LNGNTS SSLL EDG+ S
Sbjct: 704 WDIKTGARERIIPGTASQSVFDNFCKGIG-KSFSGSILNGNTSASSLLFTTIEDGSVSDS 762
Query: 764 QIQNDERGVAFSTI--------SEPSASHVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYP 815
N + + S+ S R S K N+ + +Q IKCSCP+P
Sbjct: 763 LSSNGKSANTLKAMADLSNKVESQTSNGQARSRKSTKSFQNSLYNFESGRQPIKCSCPFP 822
Query: 816 GIATLSFDLASLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAM-TAADGSNGHSMS 874
GIAT+SFDL LM Q +S A + Q+ + + P+A D S H +S
Sbjct: 823 GIATMSFDLTPLMGFNQKFKSFANRTNLQDTAVLKDQQARMSSPSARDKKMDDSLVHEIS 882
Query: 875 TDTIEEHTWIKSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEK 934
T + EE WI EEC++RFSLSFLH+W VD +LD LL+T+MKLK+PE+FIVASGLQG+K
Sbjct: 883 TGSNEELNWISLYEECLIRFSLSFLHVWGVDSDLDNLLVTDMKLKKPESFIVASGLQGDK 942
Query: 935 GSLTLTFPGLKAGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNF 994
GSLT++FPG++A LELWKSS+EFCAMRSL ++SLAQ MISLFH S+ASSALAAFY RNF
Sbjct: 943 GSLTVSFPGMRAVLELWKSSAEFCAMRSLMILSLAQHMISLFHSGSSASSALAAFYMRNF 1002
Query: 995 AENFPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWS 1054
+ PDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASR+IPL L K + S
Sbjct: 1003 VDKVPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRSIPLSLRGGKSIEHG----S 1058
Query: 1055 LSTTGDDEHANSNVEKISANE-----LASDMLPETQGNSLVEESDVLSWLESFEVQDWIS 1109
S GD ++ + +S NE ++SD P+++ S VEE ++ +WLES+E+ DWIS
Sbjct: 1059 SSEIGD---IDTELNGLSMNEKPDYGISSDCFPKSEEVSQVEEFNIRTWLESYEMHDWIS 1115
Query: 1110 CVGGTSQDAMTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLA 1169
CVGGTSQDAMTSHIIVAAALAIWY SLVK +L MLVV L+KLV + NEKYSSTAAELLA
Sbjct: 1116 CVGGTSQDAMTSHIIVAAALAIWYRSLVKKSLPMLVVHSLVKLVKSMNEKYSSTAAELLA 1175
Query: 1170 EGMESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLA 1229
EGMESTWKTC+G EIP LI D+ Q+E +S S N Q+ ++ IRETLV +LLP+LA
Sbjct: 1176 EGMESTWKTCLGNEIPHLIEDVLLQLEYMSGLSQNQLVQNSSLSVGIRETLVEVLLPNLA 1235
Query: 1230 MADILGFLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDP 1289
MADI GFLTV+ESQIWSTASDSPVHLVS+ T+IRVVRGSPRN+A +LDK VNFILQ MDP
Sbjct: 1236 MADIPGFLTVIESQIWSTASDSPVHLVSLKTLIRVVRGSPRNLAPYLDKAVNFILQIMDP 1295
Query: 1290 GNSVMRKTCLHTSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTK 1349
NSVMRK C H+SMAALKE+VHVFPMVSLND+ T+LAVGD IG+I A+IRVYD+QSVTK
Sbjct: 1296 SNSVMRKICYHSSMAALKEVVHVFPMVSLNDSWTRLAVGDVIGEINSANIRVYDLQSVTK 1355
Query: 1350 IKVLDASGPPGLPR----ESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWW 1405
IKVLDA+GPPGLP S+ ISAL FSPDGEG+VAFSEHGLMIRWWS+GSVWW
Sbjct: 1356 IKVLDATGPPGLPSLLPAGSEMPLRISISALSFSPDGEGVVAFSEHGLMIRWWSVGSVWW 1415
Query: 1406 EKLSRSLVPVQCTKLIFVPPWEGFSPNTARSSIMANIMGDS----NLQEHAGSLSYADNL 1461
EKLSR+ VPVQCTK+IFVPPWEGFSPN++R SIMA+ ++Q++ LS+AD L
Sbjct: 1416 EKLSRNFVPVQCTKVIFVPPWEGFSPNSSRLSIMASATERDTQAVDVQDNVRGLSHADIL 1475
Query: 1462 KLLIQNLDLSYRLEWVGDRKVLLTRHGLELGTFQL 1496
K+LIQ+LDLSYRLEW +RKV LTRHG ELGTFQ+
Sbjct: 1476 KILIQSLDLSYRLEWTDERKVKLTRHGNELGTFQI 1510
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297809371|ref|XP_002872569.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297318406|gb|EFH48828.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1640 bits (4246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 874/1515 (57%), Positives = 1078/1515 (71%), Gaps = 72/1515 (4%)
Query: 1 MKCRSVACIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWS---------FSDSSYS 51
MKCRSVAC+WS PPSHRVTAT++LT PPTLYTGGSDGSI+WWS + S S
Sbjct: 1 MKCRSVACLWSRAPPSHRVTATASLTNPPTLYTGGSDGSIIWWSISSSSESNSVTRLSSS 60
Query: 52 EIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALISACTD 111
EIKP+AMLCGH+API DL++C P VS +G ++ S N ++ ALISAC+D
Sbjct: 61 EIKPIAMLCGHTAPIVDLAVCDPTTVSGNGVT----SDCSDNGNADPFVNCCALISACSD 116
Query: 112 GVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESV 171
GVLCVWSRSSGHCRRRRKLPPWVGSPS++CTLPS PRYVC+GC +IDT S ++V
Sbjct: 117 GVLCVWSRSSGHCRRRRKLPPWVGSPSILCTLPSEPRYVCVGCSYIDT------QSVDTV 170
Query: 172 EGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKH 231
+G D + + P +CT+V+VDTY LTIV TVFHGNLSIG FM VV L E +
Sbjct: 171 DGAETLADTDFQNRKPSRCTVVVVDTYTLTIVHTVFHGNLSIGYLNFMGVVQLEE---QE 227
Query: 232 YGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGN 291
LM DS GRLQLVP+S+ S E+G + +SS + +N + EG VSV T G
Sbjct: 228 SLLMADSFGRLQLVPVSENS----EKGEDVSESSK--GSVVSRNWLNEGEIAVSVITRGK 281
Query: 292 IIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTM 351
++A K+ C+F LL IGEI FVD+ C E N + AM L + IE
Sbjct: 282 LVAFFSKNRCVFWLLNREEAIGEISFVDDSLCSENHPPNFHFKEAMILYSSTS-TIEGDK 340
Query: 352 GVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLY 411
E F +WD+ GSA+++ +SY++ F Y+ EI VK + F+Q+ Y
Sbjct: 341 D--DRISETFVLWDDSGSAVLFVMSYIDGDFTYKNLGEIVTSPDKRSVKSTFCFVQLRQY 398
Query: 412 LLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGK--QCRMVGEGFSFVDWVNNSTFLDE 469
LLR+E+ C VE+ SQWRP+I+VWSL G K Q +++GEG F DW++ S LD
Sbjct: 399 LLRVESTCCDVEQPSQWRPHITVWSLCLGGIGSEKELQRKLLGEGSYFADWIS-SCCLDP 457
Query: 470 NEGSCTGKSDLTFCQDTVPRSEHVDSR-QAGDGRDDFV-HKEKIVSSSMVISESFYAPYA 527
GS + ++ ++ H+ S+ + +G FV + VSSSMVISE+ Y PYA
Sbjct: 458 T-GSISAETGIS----------HLGSQCRTENGLQSFVSDNRQCVSSSMVISENLYVPYA 506
Query: 528 IVYGFFSGEIEVIQFDLFERHNSPGASLK--VNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585
+V GFFSGEIE+ +FD +SP +S + +S VSRQ LGHTG+VLCLAAHRM G A
Sbjct: 507 VVCGFFSGEIEIAKFDFLHGLDSPASSPRSDTDSLVSRQRLLGHTGSVLCLAAHRMFGDA 566
Query: 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645
G S + VL+SGSMDC+IRIWDL SGN+I +MHHHVAPVRQIIL+P +TE PWS+CFLSV
Sbjct: 567 NGCSSSHVLISGSMDCTIRIWDLESGNVIMIMHHHVAPVRQIILAPARTERPWSNCFLSV 626
Query: 646 GEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705
G+D VAL+SLETLRVERMFPGHPNYP KVVWD RGYIACL R SR SD +DVL+IWD
Sbjct: 627 GDDSCVALSSLETLRVERMFPGHPNYPTKVVWDGTRGYIACLFRSLSRKSDPIDVLYIWD 686
Query: 706 VKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765
VKTGARERVL G ASHSMFDHFC GIS S SG+VLNGNTSVSSLL P+ E+ + +
Sbjct: 687 VKTGARERVLNGAASHSMFDHFCAGISEKSYSGTVLNGNTSVSSLLFPVDEER--KPFYL 744
Query: 766 QNDERGVAFSTISEPSASHVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGIATLSFDLA 825
+N ER + ST S+PSAS + + S+ + + IKC+CP+PGI+TL FDL+
Sbjct: 745 KNYERAASLST-SKPSASQEKARE--ESSIASSFLQSIRYPPIKCTCPFPGISTLIFDLS 801
Query: 826 SLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMSTDTIEEHTWIK 885
SL Q HE + + +E ++ T+ D S + E K
Sbjct: 802 SLAVSCQTHEDS-------DMHKMLEEKSDKPTAQQKTSNDKSPVQKTLDNPAEVVHMDK 854
Query: 886 SLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFPGLK 945
++ E ++RFSLSFLHLW +D ELD++L+ +KLKRPE+FIV SGLQG+KGSLTL FPGL
Sbjct: 855 AIGEYLIRFSLSFLHLWGIDSELDQMLVAHLKLKRPESFIVTSGLQGDKGSLTLAFPGLN 914
Query: 946 AGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFAENFPDIKPPL 1005
A LELWKSSSEF A+RS+ MVSLAQ MISL H ++ SS LAAFYTRN AE +PD+KPPL
Sbjct: 915 ATLELWKSSSEFSALRSVMMVSLAQCMISLSHSTATYSSNLAAFYTRNLAEKYPDLKPPL 974
Query: 1006 LQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLSTTGDDE-HA 1064
LQLLV+FWQD+SE VRMAARSLFH AS AIPLPLCS K V SLS +E
Sbjct: 975 LQLLVTFWQDKSEQVRMAARSLFHHTASLAIPLPLCSDHASEHTKLVRSLSGISLNEPKV 1034
Query: 1065 NSNVEKISANELASDMLPETQGNSLVEESDVLSWLESFEVQDWISCVGGTSQDAMTSHII 1124
S VE+ N + S+ + + Q S EES++LSWLESFE+QDWISCVGGTSQDAM +HII
Sbjct: 1035 LSTVEEHPTNSVDSEHIHQAQRLSQAEESELLSWLESFEMQDWISCVGGTSQDAMAAHII 1094
Query: 1125 VAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEI 1184
VAAAL++WYPSLVKP LAMLVV L+ LVMA +EKYSSTAAELL+EGME+TWKT IG +I
Sbjct: 1095 VAAALSVWYPSLVKPGLAMLVVHKLLNLVMAMSEKYSSTAAELLSEGMETTWKTWIGPDI 1154
Query: 1185 PRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADILGFLTVVESQI 1244
PR++ DIFFQIECVS+S G H VP+SI+ETLV ILLPSLAMAD+LGFL+++ESQI
Sbjct: 1155 PRIVSDIFFQIECVSSS----VGAHQTVPSSIKETLVEILLPSLAMADVLGFLSIIESQI 1210
Query: 1245 WSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMA 1304
WSTASDSPVH+VS+ T+IR++R +PRN+ HL+K VNF+LQTMDP N+VMRKTCL TSMA
Sbjct: 1211 WSTASDSPVHVVSLRTLIRIIRAAPRNLVLHLEKAVNFVLQTMDPSNTVMRKTCLQTSMA 1270
Query: 1305 ALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLP-- 1362
L+E+V VFPMV LND+ T+LA+GDAI +I A IR+YDMQS+TKIKVLDASGPPGLP
Sbjct: 1271 TLREVVRVFPMVILNDSLTRLAIGDAITEINNACIRIYDMQSMTKIKVLDASGPPGLPNF 1330
Query: 1363 -RESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRSLVPVQCTKLI 1421
R S+S TT ISAL FSPDGEGLVAFSE+GLMIRWWSLGSVWWEK+SRSL PVQCTKLI
Sbjct: 1331 LRASESAVTTAISALSFSPDGEGLVAFSENGLMIRWWSLGSVWWEKISRSLTPVQCTKLI 1390
Query: 1422 FVPPWEGFSPNTARSSIMANIMGDSN---LQEHAGSLSYADNLKLLIQNLDLSYRLEWVG 1478
F+ PW+GFS N++R+S++++I D LQE A ++S+ + LK L+Q+LDLSYRLEW
Sbjct: 1391 FIHPWDGFSSNSSRTSVISSITSDEQELPLQETAKNISHVERLKQLVQHLDLSYRLEWAS 1450
Query: 1479 DRKVLLTRHGLELGT 1493
+RKV+LTRH +ELGT
Sbjct: 1451 ERKVVLTRHSVELGT 1465
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15237124|ref|NP_192866.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|5596473|emb|CAB51411.1| putative protein [Arabidopsis thaliana] gi|7267826|emb|CAB81228.1| putative protein [Arabidopsis thaliana] gi|332657591|gb|AEE82991.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1546 bits (4004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 851/1520 (55%), Positives = 1057/1520 (69%), Gaps = 104/1520 (6%)
Query: 1 MKCRSVACIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSS---------YS 51
MKCRSVAC+WS PPSHRVTAT++LT PPTLYTGGSDGSI+WWS S SS +
Sbjct: 1 MKCRSVACLWSRAPPSHRVTATASLTNPPTLYTGGSDGSIIWWSISSSSESNSVTRLPHH 60
Query: 52 EIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALISACTD 111
EIKP+AMLCGH++PI DL+IC P ++S +G S N ++ ALISACTD
Sbjct: 61 EIKPIAMLCGHTSPIVDLAICDPTILSSNGVVA------SDNGNADPFVNCCALISACTD 114
Query: 112 GVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESV 171
GVLCVWSRSSG CR+RRKLPPWVGSPS++ TLPS PRYVC+GC +ID V
Sbjct: 115 GVLCVWSRSSGQCRKRRKLPPWVGSPSILSTLPSEPRYVCVGCSYID------------V 162
Query: 172 EGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKH 231
+G D + +CT+V+VDTY LTIV TVFHGNLSIG FM VV L E +
Sbjct: 163 DGAETLADTDF---QKSRCTVVVVDTYTLTIVHTVFHGNLSIGCLNFMGVVQLDE---QE 216
Query: 232 YGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGN 291
LM DS GRLQLV +S++S E G S +N + EG VSV T G+
Sbjct: 217 SLLMADSFGRLQLVSVSEKS----EPSKGSLVS---------RNWLSEGEIAVSVITRGD 263
Query: 292 IIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTM 351
++A K C+F LL IGEI FVD+ S+N AM L + IE
Sbjct: 264 LVAFFSKSRCVFWLLNREEAIGEISFVDD-----SHSSNFLFKEAMILYSSTS-TIEGDK 317
Query: 352 GVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPS---GVKFSIHFIQM 408
+ E F +WD GSA+++ +SY++ +F Y+ EI V+ P VK + F+Q+
Sbjct: 318 D--DSISETFVLWDGSGSAVLFTMSYIDGEFTYKNFGEI--VTAPDDKRSVKSTFCFVQL 373
Query: 409 SLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGK----QCRMVGEGFSFVDWVNNS 464
LLR+E+ C VE+ SQWRP+I++WSL G GK Q +++GE F DW+++S
Sbjct: 374 RQNLLRVESSCCDVEQPSQWRPHITIWSLCL---GNGKEKELQRKVLGESSYFADWISSS 430
Query: 465 TFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYA 524
+ +GS + ++ + + S + +G + VSSSMVISE+ Y
Sbjct: 431 CL--DPKGSVSAETGTSQSGSQCSAKNDLQSFVSDNG--------QCVSSSMVISENMYV 480
Query: 525 PYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH--VSRQYFLGHTGAVLCLAAHRMV 582
PYA+VYGFFSGEIE+ +FD +SP +S + ++ V +Q LGHTG+VLCLAAHRM
Sbjct: 481 PYAVVYGFFSGEIEIAKFDFLHGIDSPASSPRSDTDPLVYKQRLLGHTGSVLCLAAHRMF 540
Query: 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642
G A G + + VL+SGSMDC+IRIWDL SGN+I +MHHHVAPVRQIILSP T+ PWS CF
Sbjct: 541 GDANGCNSSHVLISGSMDCTIRIWDLESGNVIMIMHHHVAPVRQIILSPAPTKRPWSKCF 600
Query: 643 LSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLF 702
LSVG+D VAL+SLETLRVERMFPGHPNYP KVVWD RGYIACL R SR SD +DVL+
Sbjct: 601 LSVGDDSCVALSSLETLRVERMFPGHPNYPTKVVWDGTRGYIACLFRSLSRKSDPIDVLY 660
Query: 703 IWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQ 762
IWDVKTGARERVL G ASHSMFDHFC GIS S SG+VLNGNTSVSSLL P+ E+ +
Sbjct: 661 IWDVKTGARERVLHGAASHSMFDHFCAGISEKSHSGTVLNGNTSVSSLLFPVDEER--KP 718
Query: 763 SQIQNDERGVAFSTISEPSASH-VRKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGIATLS 821
++N ER + ST S+ R+ +S S I + +IKC+CP+PGI+TL
Sbjct: 719 FYLKNYERAASLSTSKPSSSQEKTREESSTASSFLQSI----RYPSIKCTCPFPGISTLI 774
Query: 822 FDLASLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMSTDTIEEH 881
FDL+SL Q HE + + +E ++ A T+ D S + E
Sbjct: 775 FDLSSLAVYCQTHEDS-------DMHKMLEEKSDKATAQQKTSKDKSPVQKTLDNHAEVV 827
Query: 882 TWIKSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTF 941
K++ E ++RFSLSFLHLW +D ELD++L+ +KLKRPE+FIV SGLQG+KGSLTL F
Sbjct: 828 HMDKAIGEYLIRFSLSFLHLWGIDFELDQMLVAHLKLKRPESFIVTSGLQGDKGSLTLAF 887
Query: 942 PGLKAGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFAENFPDI 1001
PGL A LELWKSSSEF A+RS+ MVSLAQ MISL H ++ SS LAAFYTRN AE +PD+
Sbjct: 888 PGLNATLELWKSSSEFTALRSVIMVSLAQCMISLSHSTATYSSNLAAFYTRNLAEKYPDL 947
Query: 1002 KPPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLSTTGDD 1061
KPPLLQLLV+FWQD SE VRMAARSLFH AS AIPLPLCS A+ V SLS +
Sbjct: 948 KPPLLQLLVTFWQDNSEQVRMAARSLFHHTASLAIPLPLCSDHASEHAELVRSLSGISLN 1007
Query: 1062 E-HANSNVEKISANELASDMLPETQGNSLVEESDVLSWLESFEVQDWISCVGGTSQDAMT 1120
E S E+ N L S+ + + Q S EES++LSWLESFE+QDWISCVGGTSQDAM
Sbjct: 1008 EPKVLSTGEEYPTNSLDSEHIHQAQRLSQAEESEILSWLESFEMQDWISCVGGTSQDAMA 1067
Query: 1121 SHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCI 1180
+HIIVAAAL+IWYPSLVKP LAMLVV L+ LVMA +EKYSSTAAELL+EGME+TWKT I
Sbjct: 1068 AHIIVAAALSIWYPSLVKPGLAMLVVHKLLNLVMAMSEKYSSTAAELLSEGMETTWKTWI 1127
Query: 1181 GFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADILGFLTVV 1240
G +IPR++ DIFFQIECVS+S G + VP+SI+ETLV +LLPSLAMAD+LGFL+++
Sbjct: 1128 GPDIPRIVSDIFFQIECVSSS----VGAYQVVPSSIKETLVEVLLPSLAMADVLGFLSII 1183
Query: 1241 ESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLH 1300
ESQIWSTASDSPVH+VS+ T+IR++R +PRN+ HL+K VNF+LQTMDP N+VMRKTCL
Sbjct: 1184 ESQIWSTASDSPVHVVSLRTLIRIIRAAPRNLVLHLEKAVNFVLQTMDPSNTVMRKTCLQ 1243
Query: 1301 TSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPG 1360
TSMA L+E+V VFPMV LND+ST+LA+GD I +I A I +YDM+S+TKI+VLDASGPPG
Sbjct: 1244 TSMATLREVVRVFPMVILNDSSTRLAIGDVITEINNACIHIYDMRSMTKIRVLDASGPPG 1303
Query: 1361 LPR----ESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRSLVPVQ 1416
LP S+S TT ISAL FSPDGEGLVAFSE+GLMIRWWSLGSVWWEKLS+SL P+Q
Sbjct: 1304 LPNFLRGASESAVTTAISALSFSPDGEGLVAFSENGLMIRWWSLGSVWWEKLSQSLTPIQ 1363
Query: 1417 CTKLIFVPPWEGFSPNTARSSIMANIMGDSN---LQEHAGSLSYADNLKLLIQNLDLSYR 1473
CTKLIF+ PW+GFS +++R+S++++I D LQE A ++S+ + LK L+Q+LDLSYR
Sbjct: 1364 CTKLIFIHPWDGFSSSSSRTSVISSISNDEQELPLQETAKNISHVERLKQLVQHLDLSYR 1423
Query: 1474 LEWVGDRKVLLTRHGLELGT 1493
LEW +RKV+LTRH +ELGT
Sbjct: 1424 LEWASERKVVLTRHNVELGT 1443
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224075018|ref|XP_002304520.1| predicted protein [Populus trichocarpa] gi|222841952|gb|EEE79499.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1544 bits (3997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 818/1292 (63%), Positives = 963/1292 (74%), Gaps = 51/1292 (3%)
Query: 242 LQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC 301
++LVPI KES+ ++G+G SSQL++ N + EGG +VS+AT G++IALVLK C
Sbjct: 83 VELVPILKESNAGGDDGSGS-SKSSQLEVVNWGNKLSEGGQVVSIATRGDLIALVLKTRC 141
Query: 302 IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENF 361
IFR+L S ++IGEI F +++ C+E S S+V+G MFLE + + E F +F
Sbjct: 142 IFRILSSDASIGEISFAEDILCVEEHSNQSHVLGGMFLE--IGDTGEMQNAQYDNFLGHF 199
Query: 362 AVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFH 421
AVW+ RGSAIVY +SY+N F E EIP+ S P+ V+ FIQ+ YLLR+E+VC+
Sbjct: 200 AVWNRRGSAIVYIVSYLNNVFKSETLCEIPSSSCPADVRLLFSFIQLKNYLLRIESVCYD 259
Query: 422 VEETSQWRPYISVWSLSQK---HSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKS 478
EE +W+P++++WSL QK H +QC+M+GE +W+++S+ L E K
Sbjct: 260 DEEPLRWKPHVTIWSLCQKNNIHGKSSRQCKMLGESDFLAEWISSSS-LHEINSQGGRKM 318
Query: 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIE 538
+T Q + ++ +++ A D FVH VSSSMVISE+ + PYA+VYGFFSGEIE
Sbjct: 319 RITSLQSSFRKARTENNKHADDESFSFVHNGLAVSSSMVISENHFVPYAVVYGFFSGEIE 378
Query: 539 VIQFDLFERHNSPGAS--LKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVS 596
V++FD+ + G S V VSRQ F GHTGAVLCLAAHRM+G AKGWSF+ VLVS
Sbjct: 379 VVRFDMLLGPDCHGESPSHDVEPPVSRQCFSGHTGAVLCLAAHRMMGAAKGWSFSHVLVS 438
Query: 597 GSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656
GSMDC+IRIWDL +GNLITVM HVA VRQII TE PW DCFLSVGED VALASL
Sbjct: 439 GSMDCTIRIWDLDTGNLITVMRQHVASVRQIIFPSAWTERPWGDCFLSVGEDSCVALASL 498
Query: 657 ETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716
ETLRVERMFPGHP+YP KVVWD RGYIACLC HS SD D L+IWDVKTGARERVL
Sbjct: 499 ETLRVERMFPGHPSYPEKVVWDGARGYIACLCWSHSGLSDTSDTLYIWDVKTGARERVLC 558
Query: 717 GTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER------ 770
GTASHSM DHFCKGIS+NS+SGS+LNGNTSVSSLLLPI EDG F QS + E+
Sbjct: 559 GTASHSMLDHFCKGISVNSLSGSILNGNTSVSSLLLPILEDGNFSQSHSKLSEKVSSPRM 618
Query: 771 GVAFSTISEPSASH--VRKG-NSGKPSLNTRIGLQRKKQTIKCSCPYPGIATLSFDLASL 827
+ +P+ S V+KG PS LQ K I C+CP+PGIA LSFDLASL
Sbjct: 619 TSSMKITMDPTTSQGQVKKGIFPSTPSF-----LQMNKHAIGCTCPFPGIAALSFDLASL 673
Query: 828 MFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMSTDTIEEHTWIKSL 887
MF Q HE AA G K + E GT + M DGS+ + STDT+EEH I+S
Sbjct: 674 MFSCQKHEPAANGGVKLK-----ERGTSNPRTHDMNFDDGSDKNRTSTDTVEEHECIRSQ 728
Query: 888 EECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFPGLKAG 947
EE LRFSLSFLHLW++D ELDKLL+TEMKL RPEN I+ASGLQG+KGSLTL+FPGL +
Sbjct: 729 EEYFLRFSLSFLHLWDLDIELDKLLVTEMKLNRPENLIIASGLQGDKGSLTLSFPGLSSI 788
Query: 948 LELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFAENFPDIKPPLLQ 1007
LELWKSSSEFCAMRSLTM+S+AQRMIS H SS ASSALAAFYTR+ A+ PDIKPPLLQ
Sbjct: 789 LELWKSSSEFCAMRSLTMLSIAQRMISFSHCSSPASSALAAFYTRSLADKIPDIKPPLLQ 848
Query: 1008 LLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLSTTGDDEHANSN 1067
LLVSFWQDESEHVRMAAR+LFHCAASRAIP+PLC K A+ + V SLS G++E S
Sbjct: 849 LLVSFWQDESEHVRMAARTLFHCAASRAIPIPLCDKKANANRELVRSLSEIGENEGQVSK 908
Query: 1068 VEKISANELASDMLPETQGNSLVEES----------------DVLSWLESFEVQDWISCV 1111
V S N L+SDM PE Q SL ES +L WLES+E+QDWISCV
Sbjct: 909 VGGTSTNGLSSDMSPEPQATSLAAESPDKSLEKQGITEAERFKILDWLESYEMQDWISCV 968
Query: 1112 GGTSQDAMTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEG 1171
GGTSQDAMTSHIIVAAALA+WYPSLVKP+LA LV PL+KLVMA NE YSSTAAELL+EG
Sbjct: 969 GGTSQDAMTSHIIVAAALAMWYPSLVKPSLATLVAHPLVKLVMAMNETYSSTAAELLSEG 1028
Query: 1172 MESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMA 1231
MESTWK CI EI RLIGD FFQIE VS SAN AG P VP+SI+ETLVGILLP+LAMA
Sbjct: 1029 MESTWKACINSEISRLIGDTFFQIEYVSGQSANTAGHRPPVPSSIQETLVGILLPNLAMA 1088
Query: 1232 DILGFLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGN 1291
DI GFL V+ESQIWSTASDSPVHLVS+ T+IRV+RGSPR ++Q+LDKVV+FIL T+DPGN
Sbjct: 1089 DIPGFLNVIESQIWSTASDSPVHLVSLTTLIRVMRGSPRQLSQYLDKVVSFILHTIDPGN 1148
Query: 1292 SVMRKTCLHTSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIK 1351
S+MRKTCL +SM ALKE+V FPMV+LNDTST+LAVGDAIG+I A+I VYDMQSVTKIK
Sbjct: 1149 SIMRKTCLQSSMTALKEMVRAFPMVALNDTSTRLAVGDAIGEINNATISVYDMQSVTKIK 1208
Query: 1352 VLDASGPPGLPR----ESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEK 1407
VLDASGPPGLP S+ TTVISAL F+PDGEGLVAFSEHGLMIRWWSLGSVWWEK
Sbjct: 1209 VLDASGPPGLPNLLSGTSEMAVTTVISALSFAPDGEGLVAFSEHGLMIRWWSLGSVWWEK 1268
Query: 1408 LSRSLVPVQCTKLIFVPPWEGFSPNTARSSIMANIMG-DS--NLQEHAGSLSYADNLKLL 1464
LSR+L PVQCTK+IFVPPWEGFSPN++RSSI+ANI+G DS N+QE A +YAD+LK+L
Sbjct: 1269 LSRNLAPVQCTKVIFVPPWEGFSPNSSRSSIIANILGHDSQVNMQEKARDSTYADSLKML 1328
Query: 1465 IQNLDLSYRLEWVGDRKVLLTRHGLELGTFQL 1496
I NLDLSYRL+WV +RKVLL+RHG ELGTF L
Sbjct: 1329 IHNLDLSYRLQWVSERKVLLSRHGQELGTFPL 1360
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1496 | ||||||
| TAIR|locus:2128288 | 1446 | AT4G11270 "AT4G11270" [Arabido | 0.798 | 0.825 | 0.561 | 0.0 | |
| DICTYBASE|DDB_G0272771 | 1342 | wdr7 "WD40 repeat-containing p | 0.090 | 0.100 | 0.294 | 2.6e-28 | |
| MGI|MGI:1860197 | 1489 | Wdr7 "WD repeat domain 7" [Mus | 0.108 | 0.109 | 0.252 | 6.9e-18 | |
| FB|FBgn0023510 | 1525 | Rbcn-3B "Rabconnectin-3B" [Dro | 0.130 | 0.127 | 0.267 | 1.8e-17 | |
| UNIPROTKB|Q2KID6 | 513 | PLRG1 "Pleiotropic regulator 1 | 0.098 | 0.286 | 0.335 | 1.7e-05 | |
| MGI|MGI:1858197 | 513 | Plrg1 "pleiotropic regulator 1 | 0.098 | 0.286 | 0.335 | 1.7e-05 | |
| UNIPROTKB|O43660 | 514 | PLRG1 "Pleiotropic regulator 1 | 0.098 | 0.285 | 0.335 | 1.7e-05 | |
| RGD|621047 | 514 | Plrg1 "pleiotropic regulator 1 | 0.098 | 0.285 | 0.335 | 1.7e-05 | |
| UNIPROTKB|E2QYT6 | 515 | PLRG1 "Uncharacterized protein | 0.098 | 0.285 | 0.335 | 1.7e-05 | |
| SGD|S000006072 | 451 | PRP46 "Member of the NineTeen | 0.155 | 0.514 | 0.261 | 3.8e-05 |
| TAIR|locus:2128288 AT4G11270 "AT4G11270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3342 (1181.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 700/1246 (56%), Positives = 877/1246 (70%)
Query: 263 KSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLF 322
KS + +N + EG VSV T G+++A K C+F LL IGEI FVD
Sbjct: 235 KSEPSKGSLVSRNWLSEGEIAVSVITRGDLVAFFSKSRCVFWLLNREEAIGEISFVD--- 291
Query: 323 CLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKF 382
+ S+N AM L + IE + E F +WD GSA+++ +SY++ +F
Sbjct: 292 --DSHSSNFLFKEAMILYSSTST-IEGDKD--DSISETFVLWDGSGSAVLFTMSYIDGEF 346
Query: 383 DYEPHFEI-PAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKH 441
Y+ EI A VK + F+Q+ LLR+E+ C VE+ SQWRP+I++WSL +
Sbjct: 347 TYKNFGEIVTAPDDKRSVKSTFCFVQLRQNLLRVESSCCDVEQPSQWRPHITIWSLCLGN 406
Query: 442 SGPGK--QCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAG 499
G K Q +++GE F DW+++S LD +GS + ++ + + S +
Sbjct: 407 -GKEKELQRKVLGESSYFADWISSSC-LDP-KGSVSAETGTSQSGSQCSAKNDLQSFVSD 463
Query: 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559
+G+ VSSSMVISE+ Y PYA+VYGFFSGEIE+ +FD +SP +S + ++
Sbjct: 464 NGQ--------CVSSSMVISENMYVPYAVVYGFFSGEIEIAKFDFLHGIDSPASSPRSDT 515
Query: 560 H--VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM 617
V +Q LGHTG+VLCLAAHRM G A G + + VL+SGSMDC+IRIWDL SGN+I +M
Sbjct: 516 DPLVYKQRLLGHTGSVLCLAAHRMFGDANGCNSSHVLISGSMDCTIRIWDLESGNVIMIM 575
Query: 618 HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW 677
HHHVAPVRQIILSP T+ PWS CFLSVG+D VAL+SLETLRVERMFPGHPNYP KVVW
Sbjct: 576 HHHVAPVRQIILSPAPTKRPWSKCFLSVGDDSCVALSSLETLRVERMFPGHPNYPTKVVW 635
Query: 678 DCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSIS 737
D RGYIACL R SR SD +DVL+IWDVKTGARERVL G ASHSMFDHFC GIS S S
Sbjct: 636 DGTRGYIACLFRSLSRKSDPIDVLYIWDVKTGARERVLHGAASHSMFDHFCAGISEKSHS 695
Query: 738 GSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASH--VRKGNSGKPSL 795
G+VLNGNTSVSSLL P+ E+ + ++N ER + ST S+PS+S R+ +S S
Sbjct: 696 GTVLNGNTSVSSLLFPVDEER--KPFYLKNYERAASLST-SKPSSSQEKTREESSTASSF 752
Query: 796 NTRIGLQRKKQTIKCSCPYPGIATLSFDLASLMFPYQMHESAAKNGDKQENFTTMEHGTE 855
I + +IKC+CP+PGI+TL FDL+SL Q HE + D + +E ++
Sbjct: 753 LQSI----RYPSIKCTCPFPGISTLIFDLSSLAVYCQTHEDS----DMHK---MLEEKSD 801
Query: 856 TAGPNAMTAADGSNGHSMSTDTIEEHTWIKSLEECILRFSLSFLHLWNVDRELDKLLITE 915
A T+ D S + E K++ E ++RFSLSFLHLW +D ELD++L+
Sbjct: 802 KATAQQKTSKDKSPVQKTLDNHAEVVHMDKAIGEYLIRFSLSFLHLWGIDFELDQMLVAH 861
Query: 916 MKLKRPENFIVASGLQGEKGSLTLTFPGLKAGLELWKSSSEFCAMRSLTMVSLAQRMISL 975
+KLKRPE+FIV SGLQG+KGSLTL FPGL A LELWKSSSEF A+RS+ MVSLAQ MISL
Sbjct: 862 LKLKRPESFIVTSGLQGDKGSLTLAFPGLNATLELWKSSSEFTALRSVIMVSLAQCMISL 921
Query: 976 FHPXXXXXXXXXXFYTRNFAENFPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRA 1035
H FYTRN AE +PD+KPPLLQLLV+FWQD SE VRMAARSLFH AS A
Sbjct: 922 SHSTATYSSNLAAFYTRNLAEKYPDLKPPLLQLLVTFWQDNSEQVRMAARSLFHHTASLA 981
Query: 1036 IPLPLCSPKGVADAKPVWSLSTTGDDE-HANSNVEKISANELASDMLPETQGNSLVEESD 1094
IPLPLCS A+ V SLS +E S E+ N L S+ + + Q S EES+
Sbjct: 982 IPLPLCSDHASEHAELVRSLSGISLNEPKVLSTGEEYPTNSLDSEHIHQAQRLSQAEESE 1041
Query: 1095 VLSWLESFEVQDWISCVGGTSQDAMTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVM 1154
+LSWLESFE+QDWISCVGGTSQDAM +HIIVAAAL+IWYPSLVKP LAMLVV L+ LVM
Sbjct: 1042 ILSWLESFEMQDWISCVGGTSQDAMAAHIIVAAALSIWYPSLVKPGLAMLVVHKLLNLVM 1101
Query: 1155 ATNEKYSSTAAELLAEGMESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPA 1214
A +EKYSSTAAELL+EGME+TWKT IG +IPR++ DIFFQIECVS+S G + VP+
Sbjct: 1102 AMSEKYSSTAAELLSEGMETTWKTWIGPDIPRIVSDIFFQIECVSSS----VGAYQVVPS 1157
Query: 1215 SIRETLVGILLPSLAMADILGFLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQ 1274
SI+ETLV +LLPSLAMAD+LGFL+++ESQIWSTASDSPVH+VS+ T+IR++R +PRN+
Sbjct: 1158 SIKETLVEVLLPSLAMADVLGFLSIIESQIWSTASDSPVHVVSLRTLIRIIRAAPRNLVL 1217
Query: 1275 HLDKVVNFILQTMDPGNSVMRKTCLHTSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDI 1334
HL+K VNF+LQTMDP N+VMRKTCL TSMA L+E+V VFPMV LND+ST+LA+GD I +I
Sbjct: 1218 HLEKAVNFVLQTMDPSNTVMRKTCLQTSMATLREVVRVFPMVILNDSSTRLAIGDVITEI 1277
Query: 1335 KKASIRVYDMQSVTKIKVLDASGPPGLPR----ESDSVATTVISALIFSPDGEGLVAFSE 1390
A I +YDM+S+TKI+VLDASGPPGLP S+S TT ISAL FSPDGEGLVAFSE
Sbjct: 1278 NNACIHIYDMRSMTKIRVLDASGPPGLPNFLRGASESAVTTAISALSFSPDGEGLVAFSE 1337
Query: 1391 HGLMIRWWSLGSVWWEKLSRSLVPVQCTKLIFVPPWEGFSPNTARSSIMANIMGDSN--- 1447
+GLMIRWWSLGSVWWEKLS+SL P+QCTKLIF+ PW+GFS +++R+S++++I D
Sbjct: 1338 NGLMIRWWSLGSVWWEKLSQSLTPIQCTKLIFIHPWDGFSSSSSRTSVISSISNDEQELP 1397
Query: 1448 LQEHAGSLSYADNLKLLIQNLDLSYRLEWVGDRKVLLTRHGLELGT 1493
LQE A ++S+ + LK L+Q+LDLSYRLEW +RKV+LTRH +ELGT
Sbjct: 1398 LQETAKNISHVERLKQLVQHLDLSYRLEWASERKVVLTRHNVELGT 1443
|
|
| DICTYBASE|DDB_G0272771 wdr7 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 176 (67.0 bits), Expect = 2.6e-28, Sum P(6) = 2.6e-28
Identities = 43/146 (29%), Positives = 73/146 (50%)
Query: 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640
++ + G +L S S DC+I++WDL + L+ HH PV I S PQ+ +
Sbjct: 593 LMSSPPGTGLRRLLFSASNDCTIKVWDLSTFKLLHTFSHHTGPVYSIF-SLPQSSR--RN 649
Query: 641 CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDV 700
F+S+ ED ++ + S+E L + MF H + +KV W +GY+ D S
Sbjct: 650 TFISISEDKTIGMYSMEDLSCKHMFGVHSSSISKVHWKNEQGYLMVETIDGS-------- 701
Query: 701 LFIWDVKTGARERVLRGTASHSMFDH 726
+ IW++ +G E V+ G + + D+
Sbjct: 702 VSIWEMGSGELEGVVYGQIAKDILDN 727
|
|
| MGI|MGI:1860197 Wdr7 "WD repeat domain 7" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 149 (57.5 bits), Expect = 6.9e-18, Sum P(7) = 6.9e-18
Identities = 45/178 (25%), Positives = 77/178 (43%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH V CL V + L+SG +D S+ IWD+ SG + + H + Q+
Sbjct: 462 GHRNKVTCLLYPHQVSARYDQRY---LISGGVDFSVIIWDIFSGEMKHIFCVHGGEITQL 518
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVV-WDCPRGYIAC 686
++ P C SV D SV L SL + + H +P +V+ W Y+
Sbjct: 519 LVPPENCSARVQHCICSVASDHSVGLLSLREKKCIMLASRHL-FPIQVIKWRPSDDYLVV 577
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGI--SMNSISGSVLN 742
C D S +++W + TGA +R G + + + + + +++S+S +N
Sbjct: 578 GCTDGS--------VYVWQMDTGALDRCAMGITAVEILNACDEAVPAAVDSLSHPAVN 627
|
|
| FB|FBgn0023510 Rbcn-3B "Rabconnectin-3B" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 167 (63.8 bits), Expect = 1.8e-17, Sum P(6) = 1.8e-17
Identities = 57/213 (26%), Positives = 93/213 (43%)
Query: 510 KIVSSSMVISESFYAPYA--IVYGFFSGEIEVIQF-DLFERHNSPGASLKVNSHVSRQYF 566
+I S + ++ S Y P +V G G I ++ G + S Q
Sbjct: 398 RITESPVKLTSSIYLPQQSRLVIGREDGSIVIVPATQTVMMQLLVGIKQNFSDWPSHQIL 457
Query: 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQ 626
GH G V CL M+ + S L+SG +D ++ +WDL SG+L+ H + Q
Sbjct: 458 YGHRGRVNCLLCPSMIHSRYEKSH---LLSGGIDFAVCLWDLYSGSLLHRFCVHAGEITQ 514
Query: 627 IILSPPQTEHPWS-DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVV-WDCPRGYI 684
+++ PP++ P C SV D SV L SL+ + + H +P + W ++
Sbjct: 515 LLV-PPESCSPRILKCICSVASDHSVTLVSLQERKCVTLASRHL-FPVVTIKWRPLDDFL 572
Query: 685 ACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717
C D S +++W ++TG +RVL G
Sbjct: 573 IVGCSDGS--------VYVWQMETGHLDRVLHG 597
|
|
| UNIPROTKB|Q2KID6 PLRG1 "Pleiotropic regulator 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 58/173 (33%), Positives = 80/173 (46%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V C+A G N+ V+GS D +I+IWDL SG L + H++ VR +
Sbjct: 201 GHLGWVRCIAVE------PG---NQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGV 251
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIAC 686
I+S T P+ S GED V LE +V R + GH + A D P +
Sbjct: 252 IVS---TRSPY---LFSCGEDKQVKCWDLEYNKVIRHYHGHLS--AVYGLDLHPTIDVLV 303
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739
C SR S A IWDV+T A L G ++++ C+ I+GS
Sbjct: 304 TC---SRDSTAR----IWDVRTKASVHTLSGH-TNAVATVRCQAAEPQIITGS 348
|
|
| MGI|MGI:1858197 Plrg1 "pleiotropic regulator 1, PRL1 homolog (Arabidopsis)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 58/173 (33%), Positives = 80/173 (46%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V C+A G N+ V+GS D +I+IWDL SG L + H++ VR +
Sbjct: 201 GHLGWVRCIAVE------PG---NQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGV 251
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIAC 686
I+S T P+ S GED V LE +V R + GH + A D P +
Sbjct: 252 IVS---TRSPY---LFSCGEDKQVKCWDLEYNKVIRHYHGHLS--AVYGLDLHPTLDVLV 303
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739
C SR S A IWDV+T A L G ++++ C+ I+GS
Sbjct: 304 TC---SRDSTAR----IWDVRTKASVHTLSGH-TNAVATVRCQAAEPQIITGS 348
|
|
| UNIPROTKB|O43660 PLRG1 "Pleiotropic regulator 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 58/173 (33%), Positives = 80/173 (46%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V C+A G N+ V+GS D +I+IWDL SG L + H++ VR +
Sbjct: 202 GHLGWVRCIAVE------PG---NQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGV 252
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIAC 686
I+S T P+ S GED V LE +V R + GH + A D P +
Sbjct: 253 IVS---TRSPY---LFSCGEDKQVKCWDLEYNKVIRHYHGHLS--AVYGLDLHPTIDVLV 304
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739
C SR S A IWDV+T A L G ++++ C+ I+GS
Sbjct: 305 TC---SRDSTAR----IWDVRTKASVHTLSGH-TNAVATVRCQAAEPQIITGS 349
|
|
| RGD|621047 Plrg1 "pleiotropic regulator 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 58/173 (33%), Positives = 80/173 (46%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V C+A G N+ V+GS D +I+IWDL SG L + H++ VR +
Sbjct: 202 GHLGWVRCIAVE------PG---NQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGV 252
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIAC 686
I+S T P+ S GED V LE +V R + GH + A D P +
Sbjct: 253 IVS---TRSPY---LFSCGEDKQVKCWDLEYNKVIRHYHGHLS--AVYGLDLHPTIDVLV 304
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739
C SR S A IWDV+T A L G ++++ C+ I+GS
Sbjct: 305 TC---SRDSTAR----IWDVRTKASVHTLSGH-TNAVATVRCQAAEPQIITGS 349
|
|
| UNIPROTKB|E2QYT6 PLRG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 58/173 (33%), Positives = 80/173 (46%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH G V C+A G N+ V+GS D +I+IWDL SG L + H++ VR +
Sbjct: 203 GHLGWVRCIAVE------PG---NQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGV 253
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIAC 686
I+S T P+ S GED V LE +V R + GH + A D P +
Sbjct: 254 IVS---TRSPY---LFSCGEDKQVKCWDLEYNKVIRHYHGHLS--AVYGLDLHPTIDVLV 305
Query: 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739
C SR S A IWDV+T A L G ++++ C+ I+GS
Sbjct: 306 TC---SRDSTAR----IWDVRTKASVHTLSGH-TNAVATVRCQAAEPQIITGS 350
|
|
| SGD|S000006072 PRP46 "Member of the NineTeen Complex (NTC)" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 135 (52.6 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 70/268 (26%), Positives = 114/268 (42%)
Query: 451 VGEGFSFVDWVNNSTFL----DENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRD--- 503
V + +S + W N +++ + G+ L DT R E S +G+G+
Sbjct: 14 VDKFYSRIRWNNQFSYMATLPPHLQSEMEGQKSLLMRYDTY-RKE--SSSFSGEGKKVTL 70
Query: 504 DFVHKEKIVSSSMVISESFYAPYA--IVYGFFSGEI-EVIQFDLFERHNSPGASLKVNSH 560
V + +S VIS+ + +A V F E+ E + + +E+ S
Sbjct: 71 QHVPTDFSEASQAVISKKDHDTHASAFVNKIFQPEVAEELIVNRYEKLLSQRPEWHAPWK 130
Query: 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH 620
+SR GH G V C+A + NE ++GS D ++++WDL +G L T + H
Sbjct: 131 LSR-VINGHLGWVRCVAIDPVD--------NEWFITGSNDTTMKVWDLATGKLKTTLAGH 181
Query: 621 VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP 680
V VR + +S HP+ SV ED +V LE ++ R + GH + V
Sbjct: 182 VMTVRDVAVSD---RHPY---LFSVSEDKTVKCWDLEKNQIIRDYYGHLSGVRTVSIHPT 235
Query: 681 RGYIACLCRDHSRTSDAVDVLFIWDVKT 708
IA RD V+ +WD++T
Sbjct: 236 LDLIATAGRD--------SVIKLWDMRT 255
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1496 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-12 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-12 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-11 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-04 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.001 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.001 | |
| PRK04313 | 237 | PRK04313, PRK04313, 30S ribosomal protein S4e; Val | 0.001 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.001 | |
| COG1471 | 241 | COG1471, RPS4A, Ribosomal protein S4E [Translation | 0.002 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 2e-12
Identities = 45/156 (28%), Positives = 65/156 (41%), Gaps = 23/156 (14%)
Query: 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHV 621
R+ GHTG V C+A ++L +GS D +I++WDL +G L+ + H
Sbjct: 1 LRRTLKGHTGGVTCVAFS---------PDGKLLATGSGDGTIKVWDLETGELLRTLKGHT 51
Query: 622 APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPR 681
PVR + S S D ++ L LET R GH +Y + V + P
Sbjct: 52 GPVRDVAAS------ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS-PD 104
Query: 682 GYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717
G I + +WDV+TG LRG
Sbjct: 105 GRILSSSSRDKT-------IKVWDVETGKCLTTLRG 133
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 3e-12
Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 23/155 (14%)
Query: 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVR 625
GHT V +A + S S D +I++WDL +G + + H V
Sbjct: 131 LRGHTDWVNSVAFS---------PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN 181
Query: 626 QIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIA 685
+ SP + LS D ++ L L T + GH N V + P GY+
Sbjct: 182 SVAFSPD------GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS-PDGYLL 234
Query: 686 CLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 720
T + +WD++TG + L G +
Sbjct: 235 ASG-SEDGT------IRVWDLRTGECVQTLSGHTN 262
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 2e-11
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 23/150 (15%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GHTG V +AA + L SGS D +IR+WDL +G + + H + V +
Sbjct: 49 GHTGPVRDVAAS---------ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV 99
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACL 687
P S D ++ + +ET + GH ++ V + ++A
Sbjct: 100 AF------SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153
Query: 688 CRDHSRTSDAVDVLFIWDVKTGARERVLRG 717
+D + + +WD++TG L G
Sbjct: 154 SQDGT--------IKLWDLRTGKCVATLTG 175
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 4e-11
Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 25/163 (15%)
Query: 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLIT 615
+ + + GHT V +A +L S S D +I++WD+ +G +T
Sbjct: 79 DLETGECVRTLTGHTSYVSSVAFSPD---------GRILSSSSRDKTIKVWDVETGKCLT 129
Query: 616 VMHHHVAPVRQIILSPPQTEHPWSDCFLSVG-EDFSVALASLETLRVERMFPGHPNYPAK 674
+ H V + SP T F++ +D ++ L L T + GH
Sbjct: 130 TLRGHTDWVNSVAFSPDGT-------FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182
Query: 675 VVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717
V + P G +SD + +WD+ TG LRG
Sbjct: 183 VAFS-PDGEKLLSS-----SSD--GTIKLWDLSTGKCLGTLRG 217
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (102), Expect = 6e-04
Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 25/148 (16%)
Query: 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP 623
+ GH+ +V LA + S+D +I++WDL +G ++ + H P
Sbjct: 149 RTLEGHSESVTSLAFS--------PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP 200
Query: 624 VRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM-FPGHPNYPAKVVWDCPRG 682
V + SP S D ++ L L T ++ R GH + P G
Sbjct: 201 VSSLAFSPDGGLL-----IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF--SPDG 253
Query: 683 -YIACLCRDHSRTSDAVDVLFIWDVKTG 709
+A D + + +WD+++
Sbjct: 254 SLLASGSSDGT--------IRLWDLRSS 273
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVR 625
GH V +A +L SGS D +IR+WDL +G + + H V
Sbjct: 215 LRGHENGVNSVAFS---------PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT 265
Query: 626 QIILSP 631
+ SP
Sbjct: 266 SLAWSP 271
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.2 bits (100), Expect = 0.001
Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 18/166 (10%)
Query: 591 NEVLVSGSMDCSIRIWDL-GSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 649
+L SGS D +IR+WDL S +L+ + H + V + S P S D
Sbjct: 253 GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS------PDGKLLASGSSDG 306
Query: 650 SVALASLETLRV--ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707
+V L LET ++ GH + + + P G + T + +WD++
Sbjct: 307 TVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGT------IRLWDLR 359
Query: 708 TGARERVLRG--TASHSMFDHFCKGISMNSISGSVLNGNTSVSSLL 751
TG + L G F + +S S G+V + S SLL
Sbjct: 360 TGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL 405
|
Length = 466 |
| >gnl|CDD|179820 PRK04313, PRK04313, 30S ribosomal protein S4e; Validated | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.001
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 14/66 (21%)
Query: 218 FMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGV 277
MDV+S+ + G++Y ++ D GRL L+PIS+E E LCK I
Sbjct: 82 LMDVISI-PETGEYYRVLPDEKGRLVLIPISEE-----EAKLKLCK--------IENKTT 127
Query: 278 VEGGHL 283
V+GG +
Sbjct: 128 VKGGKI 133
|
Length = 237 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.001
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Query: 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607
GHTG V +A +L SGS D ++R+WD
Sbjct: 7 LKGHTGPVTSVAFS---------PDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|224388 COG1471, RPS4A, Ribosomal protein S4E [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 215 PWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCK 263
P MDV+S+ G+HY ++ D GRL L PIS E E LCK
Sbjct: 82 PVGLMDVISI-PKTGEHYRVLPDEKGRLVLHPISAE-----EASYKLCK 124
|
Length = 241 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.002
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Query: 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607
GHTG V +A + L SGS D +I++WD
Sbjct: 8 LKGHTGPVTSVAFS---------PDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1496 | |||
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.96 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.95 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.95 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.95 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.94 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.94 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.92 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.92 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.91 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.91 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.91 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.91 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.91 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.91 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.9 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.89 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.89 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.89 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.89 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.88 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.88 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.87 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.87 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.86 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.86 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.85 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.85 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.85 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.85 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.85 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.84 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.84 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.83 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.83 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.83 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.83 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.82 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.81 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.81 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.81 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.81 | |
| PTZ00421 | 493 | coronin; Provisional | 99.79 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.79 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.78 | |
| PTZ00420 | 568 | coronin; Provisional | 99.78 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.77 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.77 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.77 | |
| PTZ00421 | 493 | coronin; Provisional | 99.76 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.76 | |
| PTZ00420 | 568 | coronin; Provisional | 99.76 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.75 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.75 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.75 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.75 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.74 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.73 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.72 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.71 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.71 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.71 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.7 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.7 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.7 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.7 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.69 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.69 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.69 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.69 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.69 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.68 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.68 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.68 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.68 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.67 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.67 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.67 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.66 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.65 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.65 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.64 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.64 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.64 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.64 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.63 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.63 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.62 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.61 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.6 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.6 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.6 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.59 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.59 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.59 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.58 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.58 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.58 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.57 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.55 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.55 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.54 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.53 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.53 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.51 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.51 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.51 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.5 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.49 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.49 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.47 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.47 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.47 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.46 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.46 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.45 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.44 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.43 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.43 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.42 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.42 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.42 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.41 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.4 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.39 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.38 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.38 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.38 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.38 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.38 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.36 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.35 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.35 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.35 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.33 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.32 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.3 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.28 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.28 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.27 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.26 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.25 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.23 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.23 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.22 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.22 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.2 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.19 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.18 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.18 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.14 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.13 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.12 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.12 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.11 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.1 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.08 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.05 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.04 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.0 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.99 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.99 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.98 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.96 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.95 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.95 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.95 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.94 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 98.92 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.92 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.88 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.85 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.84 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.83 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.83 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.81 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.77 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.76 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.74 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.7 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.7 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.68 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.66 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.66 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.64 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.62 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.61 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.6 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.6 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.58 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.58 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.56 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.56 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.54 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.5 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.49 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.46 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.45 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.43 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.41 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.41 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.4 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.35 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.32 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.3 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.29 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.29 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.21 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.2 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.15 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.13 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.12 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.11 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.1 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.1 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.1 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.09 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.08 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.07 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.07 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.04 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.04 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.04 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.02 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.02 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.99 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.98 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.96 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.9 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.85 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 97.85 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.84 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.81 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.79 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 97.71 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.65 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.61 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 97.61 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.61 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.57 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.55 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.55 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.49 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.48 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.47 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.47 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.43 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.42 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.42 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 97.41 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 97.37 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.32 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.23 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.18 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.12 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.1 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.02 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.01 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 96.99 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 96.97 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 96.94 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 96.89 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 96.89 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 96.81 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.78 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 96.78 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.77 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.7 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 96.69 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 96.57 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 96.39 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 96.35 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 96.22 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 96.19 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 96.19 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 96.16 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 96.15 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 96.06 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.04 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 96.01 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.87 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 95.83 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.82 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.8 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 95.77 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 95.7 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 95.56 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 95.54 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 95.54 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 95.28 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 95.28 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.25 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 95.2 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 95.16 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.16 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 94.68 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 94.67 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 94.59 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.52 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 94.37 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 94.07 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 94.02 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 93.74 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 93.63 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 92.71 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 92.57 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 92.27 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 92.24 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 91.86 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 91.83 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 91.78 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 91.58 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 91.46 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 90.99 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 90.76 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 90.72 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.7 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 90.62 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 90.25 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 89.87 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 89.86 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 88.48 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 87.93 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 86.55 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 86.45 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 85.17 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 85.01 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 84.43 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 83.76 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 83.45 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 82.34 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 82.23 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 81.02 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 80.23 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 80.11 |
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=356.09 Aligned_cols=544 Identities=15% Similarity=0.143 Sum_probs=365.8
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeec-cccceeEeeeccccccccCccccccccccccccc
Q 000450 17 HRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCG-HSAPIADLSICYPAMVSRDGKAEHWKAENSSNVM 95 (1496)
Q Consensus 17 h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~G-Ht~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~ 95 (1496)
..||+++++||++.|++++..+.+++|++.+ + +.+..+.+ |++||--++
T Consensus 63 d~ita~~l~~d~~~L~~a~rs~llrv~~L~t---g--k~irswKa~He~Pvi~ma------------------------- 112 (775)
T KOG0319|consen 63 DEITALALTPDEEVLVTASRSQLLRVWSLPT---G--KLIRSWKAIHEAPVITMA------------------------- 112 (775)
T ss_pred hhhheeeecCCccEEEEeeccceEEEEEccc---c--hHhHhHhhccCCCeEEEE-------------------------
Confidence 5699999999999999999999999999985 3 34444555 999999998
Q ss_pred ccccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcC-CCCeEEEEcccccccCCccccccccccccc
Q 000450 96 GKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLP-SNPRYVCIGCCFIDTNQLSDHHSFESVEGD 174 (1496)
Q Consensus 96 g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s-~~~~ll~~G~~~id~~~l~~~~~~~~v~~~ 174 (1496)
+.|.+..|++|+.||.++|||+..+.|....+-++ |....+.+.+ ...+++.+|..
T Consensus 113 --~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~g--GvVssl~F~~~~~~~lL~sg~~------------------- 169 (775)
T KOG0319|consen 113 --FDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHG--GVVSSLLFHPHWNRWLLASGAT------------------- 169 (775)
T ss_pred --EcCCCceEEeccccceEEEEEeeCCEEEEEecCCC--ceEEEEEeCCccchhheeecCC-------------------
Confidence 56677889999999999999999999999977652 4444455554 23367777765
Q ss_pred ccccccCCCCCCCCccEEEEEECCceEE-EEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCcc
Q 000450 175 LVSEDKEVPMKNPPKCTLVIVDTYGLTI-VQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHL 253 (1496)
Q Consensus 175 ~~~~d~~~~~~~~~~~~I~v~D~~t~~~-l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~ 253 (1496)
++.+.+||..+.+. +.++.. +.+. |+.++|++ |+. .++.++.|..+-|||+.+-+
T Consensus 170 --------------D~~v~vwnl~~~~tcl~~~~~-H~S~--vtsL~~~~---d~~--~~ls~~RDkvi~vwd~~~~~-- 225 (775)
T KOG0319|consen 170 --------------DGTVRVWNLNDKRTCLHTMIL-HKSA--VTSLAFSE---DSL--ELLSVGRDKVIIVWDLVQYK-- 225 (775)
T ss_pred --------------CceEEEEEcccCchHHHHHHh-hhhh--eeeeeecc---CCc--eEEEeccCcEEEEeehhhhh--
Confidence 48999999886655 333333 3344 89999984 433 36666999999999995432
Q ss_pred ccccCCCcccCCCccceeeeccCcccCceEEEEecC-----CcEEEEEeCCeEEEEEcCCCcccceeeeecceeEeeCCC
Q 000450 254 DREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATC-----GNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGS 328 (1496)
Q Consensus 254 ~~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~d-----g~~l~t~~~~~~~~~l~d~~~~ige~~~~~~~l~~~~~~ 328 (1496)
....-++| +..+.+.+-++ |..+.++++.+ .++.|+... +...+ ....+
T Consensus 226 -~l~~lp~y----------------e~~E~vv~l~~~~~~~~~~~~TaG~~g-~~~~~d~es--~~~~~------~~~~~ 279 (775)
T KOG0319|consen 226 -KLKTLPLY----------------ESLESVVRLREELGGKGEYIITAGGSG-VVQYWDSES--GKCVY------KQRQS 279 (775)
T ss_pred -hhheechh----------------hheeeEEEechhcCCcceEEEEecCCc-eEEEEeccc--chhhh------hhccC
Confidence 11111222 22344454444 55777777766 566677665 11110 00011
Q ss_pred CCceeeeeEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEecCCCCCcccCeeeecCcCCCCCceeeEEEeec
Q 000450 329 TNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQM 408 (1496)
Q Consensus 329 ~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~~~~~~~ip~~~~~~~~~~~~~f~~~ 408 (1496)
..+-+..+..... ...+.+-+.+....+|..... .+- ....+-.+...+..|...
T Consensus 280 ~~~e~~~~~~~~~----------------~~~~l~vtaeQnl~l~d~~~l-------~i~--k~ivG~ndEI~Dm~~lG~ 334 (775)
T KOG0319|consen 280 DSEEIDHLLAIES----------------MSQLLLVTAEQNLFLYDEDEL-------TIV--KQIVGYNDEILDMKFLGP 334 (775)
T ss_pred Cchhhhcceeccc----------------cCceEEEEccceEEEEEcccc-------EEe--hhhcCCchhheeeeecCC
Confidence 0111122222211 113333344444444422100 000 000011122233444433
Q ss_pred ceeeeeeeeeeccccccccccCeEEEEEccccCCCCCcceeEeccCCceeeeccccccccCCCCcccceeecccccCccc
Q 000450 409 SLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVP 488 (1496)
Q Consensus 409 ~~~l~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~i~ 488 (1496)
....+.+.+ . .|.++++.+ .+..|+ +..|....+-..+. -.+| +-+++.+.+..+.
T Consensus 335 e~~~laVAT------N----s~~lr~y~~------~~~~c~-ii~GH~e~vlSL~~----~~~g---~llat~sKD~svi 390 (775)
T KOG0319|consen 335 EESHLAVAT------N----SPELRLYTL------PTSYCQ-IIPGHTEAVLSLDV----WSSG---DLLATGSKDKSVI 390 (775)
T ss_pred ccceEEEEe------C----CCceEEEec------CCCceE-EEeCchhheeeeee----cccC---cEEEEecCCceEE
Confidence 322233332 1 234665543 222344 33443221110000 0123 2477888999999
Q ss_pred cccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCC---cceEEE
Q 000450 489 RSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS---HVSRQY 565 (1496)
Q Consensus 489 lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s---~~~~~~ 565 (1496)
+|++.++...-.+.....+|...|.++++. .-.+..+++++.|+++++|.+.. .. +.+. ..+..+
T Consensus 391 lWr~~~~~~~~~~~a~~~gH~~svgava~~---~~~asffvsvS~D~tlK~W~l~~--s~-------~~~~~~~~~~~~t 458 (775)
T KOG0319|consen 391 LWRLNNNCSKSLCVAQANGHTNSVGAVAGS---KLGASFFVSVSQDCTLKLWDLPK--SK-------ETAFPIVLTCRYT 458 (775)
T ss_pred EEEecCCcchhhhhhhhcccccccceeeec---ccCccEEEEecCCceEEEecCCC--cc-------cccccceehhhHH
Confidence 999966555445666678999999999862 23356899999999999955542 00 0111 011123
Q ss_pred EecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEE
Q 000450 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1496)
Q Consensus 566 l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sg 645 (1496)
...|...|+|++++|+ +.+++|||.|++.++|+++....+.++.+|+..|++|.|+|. .++++|+
T Consensus 459 ~~aHdKdIN~Vaia~n---------dkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~------dq~laT~ 523 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAPN---------DKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKN------DQLLATC 523 (775)
T ss_pred HHhhcccccceEecCC---------CceEEecccccceeeecccCceEEEEeeCCccceEEEEeccc------cceeEec
Confidence 4579999999999997 899999999999999999999999999999999999999998 8999999
Q ss_pred eCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceee
Q 000450 646 GEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFD 725 (1496)
Q Consensus 646 s~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~ 725 (1496)
|.|++|+||.+.++.|+.+|.||...|..+.|-.+|..|++++.| |-|++|+++++++++++.+|..++...
T Consensus 524 SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad--------GliKlWnikt~eC~~tlD~H~DrvWaL 595 (775)
T KOG0319|consen 524 SGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD--------GLIKLWNIKTNECEMTLDAHNDRVWAL 595 (775)
T ss_pred cCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCC--------CcEEEEeccchhhhhhhhhccceeEEE
Confidence 999999999999999999999999999999999999999999998 999999999999999999999999887
Q ss_pred eeecccccccccceEEcCCccccccceeeccCCcEEeec
Q 000450 726 HFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1496)
Q Consensus 726 ~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~ 764 (1496)
...+. .. .+++-..|+++..|.
T Consensus 596 ~~~~~------~~-----------~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 596 SVSPL------LD-----------MFVTGGGDGRIIFWK 617 (775)
T ss_pred eecCc------cc-----------eeEecCCCeEEEEee
Confidence 43311 11 122333489999996
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=328.93 Aligned_cols=360 Identities=19% Similarity=0.213 Sum_probs=268.5
Q ss_pred CCCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCccccccccccccc
Q 000450 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1496)
Q Consensus 14 ~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~ 93 (1496)
.+...|-|++|+|||+.||||+.|.++++||+.+ ..|..+..||...|.|++
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T-----eTp~~t~KgH~~WVlcva----------------------- 164 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT-----ETPLFTCKGHKNWVLCVA----------------------- 164 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCCCceEEeeccCC-----CCcceeecCCccEEEEEE-----------------------
Confidence 4556799999999999999999999999999996 578899999999999999
Q ss_pred ccccccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcC-------CCCeEEEEcccccccCCccccc
Q 000450 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLP-------SNPRYVCIGCCFIDTNQLSDHH 166 (1496)
Q Consensus 94 ~~g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s-------~~~~ll~~G~~~id~~~l~~~~ 166 (1496)
++||++.||||+.||+|++||-.+|+++-+ .++ |.-.-|..+. +..++++.+.-
T Consensus 165 ----wsPDgk~iASG~~dg~I~lwdpktg~~~g~-~l~---gH~K~It~Lawep~hl~p~~r~las~sk----------- 225 (480)
T KOG0271|consen 165 ----WSPDGKKIASGSKDGSIRLWDPKTGQQIGR-ALR---GHKKWITALAWEPLHLVPPCRRLASSSK----------- 225 (480)
T ss_pred ----ECCCcchhhccccCCeEEEecCCCCCcccc-ccc---CcccceeEEeecccccCCCccceecccC-----------
Confidence 688888899999999999999999987643 233 3223333221 55566655432
Q ss_pred ccccccccccccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEE
Q 000450 167 SFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVP 246 (1496)
Q Consensus 167 ~~~~v~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWd 246 (1496)
++.++|||...++++.++.. +..+ |+|+.. .|. +.++.++.|++||+|+
T Consensus 226 ----------------------Dg~vrIWd~~~~~~~~~lsg-HT~~--VTCvrw-----GG~-gliySgS~DrtIkvw~ 274 (480)
T KOG0271|consen 226 ----------------------DGSVRIWDTKLGTCVRTLSG-HTAS--VTCVRW-----GGE-GLIYSGSQDRTIKVWR 274 (480)
T ss_pred ----------------------CCCEEEEEccCceEEEEecc-Cccc--eEEEEE-----cCC-ceEEecCCCceEEEEE
Confidence 38999999999999998876 5444 888873 233 6677889999999999
Q ss_pred CCCCCccccccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCCcccceeeeecceeEeeC
Q 000450 247 ISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEG 326 (1496)
Q Consensus 247 l~~~~~~~~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~~~l~d~~~~ige~~~~~~~l~~~~ 326 (1496)
...+.. + +.+.+|...++.++++.| +.+ .++.
T Consensus 275 a~dG~~---------------~---r~lkGHahwvN~lalsTd-----------y~L---Rtga---------------- 306 (480)
T KOG0271|consen 275 ALDGKL---------------C---RELKGHAHWVNHLALSTD-----------YVL---RTGA---------------- 306 (480)
T ss_pred ccchhH---------------H---Hhhcccchheeeeeccch-----------hhh---hccc----------------
Confidence 876521 0 112334344444442221 000 0000
Q ss_pred CCCCceeeeeEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEecCCCCCcccCeeeecCcCCCCCceeeEEEe
Q 000450 327 GSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFI 406 (1496)
Q Consensus 327 ~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~~~~~~~ip~~~~~~~~~~~~~f~ 406 (1496)
|
T Consensus 307 -----------f-------------------------------------------------------------------- 307 (480)
T KOG0271|consen 307 -----------F-------------------------------------------------------------------- 307 (480)
T ss_pred -----------c--------------------------------------------------------------------
Confidence 0
Q ss_pred ecceeeeeeeeeeccccccccccCeEEEEEccccCCCCCcceeEeccCCceeeeccccccccCCCCcccceeecccccCc
Q 000450 407 QMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDT 486 (1496)
Q Consensus 407 ~~~~~l~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~ 486 (1496)
++.+. ..+| .. ..+. +.+.+
T Consensus 308 --------------~~t~~-~~~~-~s--e~~~---------~Al~r--------------------------------- 327 (480)
T KOG0271|consen 308 --------------DHTGR-KPKS-FS--EEQK---------KALER--------------------------------- 327 (480)
T ss_pred --------------ccccc-cCCC-hH--HHHH---------HHHHH---------------------------------
Confidence 00000 0000 00 0000 00000
Q ss_pred cccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEE
Q 000450 487 VPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF 566 (1496)
Q Consensus 487 i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l 566 (1496)
++ .+.- -.|.++|+|+.|+++.+ |+- .++.+++..+
T Consensus 328 ---Y~-------------------~~~~--------~~~erlVSgsDd~tlfl--W~p------------~~~kkpi~rm 363 (480)
T KOG0271|consen 328 ---YE-------------------AVLK--------DSGERLVSGSDDFTLFL--WNP------------FKSKKPITRM 363 (480)
T ss_pred ---HH-------------------Hhhc--------cCcceeEEecCCceEEE--ecc------------cccccchhhh
Confidence 00 0000 11237999999999999 551 2344678889
Q ss_pred ecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEe
Q 000450 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 646 (1496)
Q Consensus 567 ~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs 646 (1496)
.||..-|+.+.|+|| +++++|+|.|..|++||-++|+.+.+|++|.++|++++|+.| .++++|||
T Consensus 364 tgHq~lVn~V~fSPd---------~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaD------sRLlVS~S 428 (480)
T KOG0271|consen 364 TGHQALVNHVSFSPD---------GRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSAD------SRLLVSGS 428 (480)
T ss_pred hchhhheeeEEECCC---------ccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccC------ccEEEEcC
Confidence 999999999999998 899999999999999999999999999999999999999999 89999999
Q ss_pred CCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000450 647 EDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 647 ~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWD 705 (1496)
.|.++++||+++.+....++||.+.|.++.|+|||..+++|+.| ..+++|-
T Consensus 429 kDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkd--------kv~~lw~ 479 (480)
T KOG0271|consen 429 KDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKD--------KVLRLWR 479 (480)
T ss_pred CCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCc--------eEEEeec
Confidence 99999999999999999999999999999999999999999998 9999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=334.55 Aligned_cols=543 Identities=15% Similarity=0.162 Sum_probs=365.5
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccccccccccccCC
Q 000450 22 TSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLD 101 (1496)
Q Consensus 22 va~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g~~s~d 101 (1496)
++++++|+.|+|.+.|. |..-|+.+ +.+.....-.+-...|++++ .+||
T Consensus 25 ~~~s~nG~~L~t~~~d~-Vi~idv~t---~~~~l~s~~~ed~d~ita~~---------------------------l~~d 73 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDR-VIIIDVAT---GSIALPSGSNEDEDEITALA---------------------------LTPD 73 (775)
T ss_pred eeECCCCCEEEEecCce-EEEEEccC---CceecccCCccchhhhheee---------------------------ecCC
Confidence 89999999999988764 55678875 33321112224456788887 6889
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCcccccccccccccccccccC
Q 000450 102 NGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDKE 181 (1496)
Q Consensus 102 ~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~~~~d~~ 181 (1496)
+.+|++++..+-+++|++.+|++++..+.. |..|..+.++.+.+-+++.|..
T Consensus 74 ~~~L~~a~rs~llrv~~L~tgk~irswKa~--He~Pvi~ma~~~~g~LlAtgga-------------------------- 125 (775)
T KOG0319|consen 74 EEVLVTASRSQLLRVWSLPTGKLIRSWKAI--HEAPVITMAFDPTGTLLATGGA-------------------------- 125 (775)
T ss_pred ccEEEEeeccceEEEEEcccchHhHhHhhc--cCCCeEEEEEcCCCceEEeccc--------------------------
Confidence 999999999999999999999999887652 2678899999999988888875
Q ss_pred CCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCccccccCCCc
Q 000450 182 VPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGL 261 (1496)
Q Consensus 182 ~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~~~~~~~l 261 (1496)
++.+.|||...+.+...+.. +++.|..+.|.| +-+..-++.+..|+++++|++.....
T Consensus 126 -------D~~v~VWdi~~~~~th~fkG---~gGvVssl~F~~---~~~~~lL~sg~~D~~v~vwnl~~~~t--------- 183 (775)
T KOG0319|consen 126 -------DGRVKVWDIKNGYCTHSFKG---HGGVVSSLLFHP---HWNRWLLASGATDGTVRVWNLNDKRT--------- 183 (775)
T ss_pred -------cceEEEEEeeCCEEEEEecC---CCceEEEEEeCC---ccchhheeecCCCceEEEEEcccCch---------
Confidence 38999999999988888876 466799999884 43323345559999999999986520
Q ss_pred ccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCCc--ccceeeeecceeEeeCCCCCceeeeeEEe
Q 000450 262 CKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGS--TIGEICFVDNLFCLEGGSTNSYVIGAMFL 339 (1496)
Q Consensus 262 ~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~~~l~d~~~--~ige~~~~~~~l~~~~~~~~~~~v~g~~~ 339 (1496)
.+ +....|...+..+++++|+..+++++.+..++ +||... .++.....+.+=.....+.+...-+.+++
T Consensus 184 -----cl---~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~-vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~ 254 (775)
T KOG0319|consen 184 -----CL---HTMILHKSAVTSLAFSEDSLELLSVGRDKVII-VWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYII 254 (775)
T ss_pred -----HH---HHHHhhhhheeeeeeccCCceEEEeccCcEEE-EeehhhhhhhheechhhheeeEEEechhcCCcceEEE
Confidence 01 22344777889999999999999998887532 466543 11111000000000000000000022333
Q ss_pred echhhhhhcccccccccccceEEEEcCCCcEEEEEEecCC-CCCcccCeeeecCcCCCCCceeeEEEeecceeeeeeeee
Q 000450 340 ERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMN-EKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETV 418 (1496)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~-~~~~~~~~~~ip~~~~~~~~~~~~~f~~~~~~l~~v~s~ 418 (1496)
..+ -.+.+.+|+..+...+|+..-.. +.+. ....++. ..++.+.-...+-+++-
T Consensus 255 TaG--------------~~g~~~~~d~es~~~~~~~~~~~~~e~~--~~~~~~~-----~~~~l~vtaeQnl~l~d---- 309 (775)
T KOG0319|consen 255 TAG--------------GSGVVQYWDSESGKCVYKQRQSDSEEID--HLLAIES-----MSQLLLVTAEQNLFLYD---- 309 (775)
T ss_pred Eec--------------CCceEEEEecccchhhhhhccCCchhhh--cceeccc-----cCceEEEEccceEEEEE----
Confidence 222 13466677776666655432111 1000 0001111 11111111111111210
Q ss_pred eccccccccccCeEEEEE-ccccCCCCCcceeEeccCCceeeeccccccccCCCCcccceeecccccCccccccccCCCC
Q 000450 419 CFHVEETSQWRPYISVWS-LSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQ 497 (1496)
Q Consensus 419 ~~~~~~~~~~~p~v~vws-l~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~i~lWd~~~~~~ 497 (1496)
.++ .++-. +-+.+ .+-..+++++.. +. .++..+....+++++......
T Consensus 310 ---~~~-------l~i~k~ivG~n-dEI~Dm~~lG~e----------------~~----~laVATNs~~lr~y~~~~~~c 358 (775)
T KOG0319|consen 310 ---EDE-------LTIVKQIVGYN-DEILDMKFLGPE----------------ES----HLAVATNSPELRLYTLPTSYC 358 (775)
T ss_pred ---ccc-------cEEehhhcCCc-hhheeeeecCCc----------------cc----eEEEEeCCCceEEEecCCCce
Confidence 111 11110 00100 000011222211 11 466667777888886544322
Q ss_pred CCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEE
Q 000450 498 AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLA 577 (1496)
Q Consensus 498 ~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La 577 (1496)
+.+.+|...|.++...+.+- .+++|+.|.++++|+++. +.....++....||++.|.+++
T Consensus 359 -----~ii~GH~e~vlSL~~~~~g~----llat~sKD~svilWr~~~-----------~~~~~~~~a~~~gH~~svgava 418 (775)
T KOG0319|consen 359 -----QIIPGHTEAVLSLDVWSSGD----LLATGSKDKSVILWRLNN-----------NCSKSLCVAQANGHTNSVGAVA 418 (775)
T ss_pred -----EEEeCchhheeeeeecccCc----EEEEecCCceEEEEEecC-----------Ccchhhhhhhhcccccccceee
Confidence 35789999999988555553 899999999999977641 1222345666789999999999
Q ss_pred EecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc---------eEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCC
Q 000450 578 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---------LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1496)
Q Consensus 578 ~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~---------~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~D 648 (1496)
++.. ...+|+|+|.|+++++|++...+ +..+...|...|++|+++|+ ..++|+||.|
T Consensus 419 ~~~~--------~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n------dkLiAT~SqD 484 (775)
T KOG0319|consen 419 GSKL--------GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN------DKLIATGSQD 484 (775)
T ss_pred eccc--------CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC------CceEEecccc
Confidence 9654 26799999999999999997521 11245679999999999999 8999999999
Q ss_pred CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000450 649 FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1496)
Q Consensus 649 gsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~ 728 (1496)
++.+||+++.++.+.++.||...|++|.|+|.++.|+|++.| ++|+||.+.++.+++++.||++.+..+.|.
T Consensus 485 ktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD--------~TvKIW~is~fSClkT~eGH~~aVlra~F~ 556 (775)
T KOG0319|consen 485 KTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGD--------KTVKIWSISTFSCLKTFEGHTSAVLRASFI 556 (775)
T ss_pred cceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCC--------ceEEEEEeccceeeeeecCccceeEeeeee
Confidence 999999999999999999999999999999999999999998 999999999999999999999999998887
Q ss_pred cccccccccceEEcCCccccccceeeccCCcEEeecccccc
Q 000450 729 KGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1496)
Q Consensus 729 ~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e 769 (1496)
+ +|.. +++..+||-+|+|++++.+
T Consensus 557 ~------------~~~q-----liS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 557 R------------NGKQ-----LISAGADGLIKLWNIKTNE 580 (775)
T ss_pred e------------CCcE-----EEeccCCCcEEEEeccchh
Confidence 3 2333 3455569999999986544
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=310.20 Aligned_cols=580 Identities=16% Similarity=0.115 Sum_probs=374.1
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccccccccc
Q 000450 17 HRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMG 96 (1496)
Q Consensus 17 h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g 96 (1496)
..|||+..+||...||.|.+||.|++|++.. . .+..++.||.++|+++.
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s---~--~~~~tfngHK~AVt~l~-------------------------- 114 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLES---E--EILITFNGHKAAVTTLK-------------------------- 114 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCC---C--ceeeeecccccceEEEE--------------------------
Confidence 4799999999999999999999999999983 2 46678899999999998
Q ss_pred cccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCccccccccccccccc
Q 000450 97 KSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLV 176 (1496)
Q Consensus 97 ~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~~ 176 (1496)
+...|.+|+|||.|+.|.|||+..-.-+.+...| -.+-+...+..++..+++++.+
T Consensus 115 -fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GH--kd~iT~~~F~~~~~~lvS~sKD--------------------- 170 (888)
T KOG0306|consen 115 -FDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGH--KDSITQALFLNGDSFLVSVSKD--------------------- 170 (888)
T ss_pred -EcccCceEeecCCCccEEEEEeccceeeEEeecc--hHHHhHHhccCCCeEEEEeccC---------------------
Confidence 5677899999999999999999754444332221 1223334455567888888877
Q ss_pred ccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCccccc
Q 000450 177 SEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDRE 256 (1496)
Q Consensus 177 ~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~~~ 256 (1496)
..|.+||..+..+..+....+ +-+..+++.+ ..+++++.|+.++||++.-.. .+
T Consensus 171 -------------s~iK~WdL~tqhCf~Thvd~r---~Eiw~l~~~~-------~~lvt~~~dse~~v~~L~~~~---D~ 224 (888)
T KOG0306|consen 171 -------------SMIKFWDLETQHCFETHVDHR---GEIWALVLDE-------KLLVTAGTDSELKVWELAFED---DE 224 (888)
T ss_pred -------------ceEEEEecccceeeeEEeccc---ceEEEEEEec-------ceEEEEecCCceEEEEeeccc---cc
Confidence 789999999999988876523 2367777662 125555999999999995431 11
Q ss_pred cCCCcccCCCccceeeeccCcccCceEEEEecC--CcEEEEEeCCeE--EEEEcCCCcccceeee----ecceeEeeCCC
Q 000450 257 EGNGLCKSSSQLDMAILQNGVVEGGHLVSVATC--GNIIALVLKDHC--IFRLLGSGSTIGEICF----VDNLFCLEGGS 328 (1496)
Q Consensus 257 ~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~d--g~~l~t~~~~~~--~~~l~d~~~~ige~~~----~~~~l~~~~~~ 328 (1496)
.....+..-++.+.+.. + +.++.+.+..+ ++.++..+.+.. .+++.......+.... .......+...
T Consensus 225 ~~~~~~~s~~~~G~~~r-q---sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~ 300 (888)
T KOG0306|consen 225 KETNRYISTKLRGTFIR-Q---SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENE 300 (888)
T ss_pred ccccccceeeccceeee-c---cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccc
Confidence 11111111111111111 1 22334444444 677776665543 1222222210000000 00000000000
Q ss_pred ---CCc-----eeeeeEEeechhhhhhccccc-ccccccceEEEEcCCCcEEEEEEecCCCCCcc-cCeeeecCcCCCCC
Q 000450 329 ---TNS-----YVIGAMFLERVVAEKIENTMG-VCTTFYENFAVWDNRGSAIVYAISYMNEKFDY-EPHFEIPAVSYPSG 398 (1496)
Q Consensus 329 ---~~~-----~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~~-~~~~~ip~~~~~~~ 398 (1496)
... .-+..+.... .+.+-.- +..... ...+--.+..++.|.++........ ...-.+ ...+.+.
T Consensus 301 ~~v~~sl~~~i~r~~~ir~~~----kiks~dv~~~~~~~-~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i-~~~GHR~ 374 (888)
T KOG0306|consen 301 DDVEKSLSDEIKRLETIRTSA----KIKSFDVTPSGGTE-NTLVLLANNTVEWYSLENSGKTSPEADRTSNI-EIGGHRS 374 (888)
T ss_pred cchhhhHHHHHHHHHheechh----heeEEEEEecCCcc-eeEEEeecCceEEEEeccCCCCCcccccccee-eeccchh
Confidence 000 0000000000 0000000 011111 2223355666778888763322110 111111 2234566
Q ss_pred ceeeEEEeecceeeeeeeeeeccccccccccCeEEEEEccccCCCCCcceeEeccCCceeeeccccccccCCCCccccee
Q 000450 399 VKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKS 478 (1496)
Q Consensus 399 ~~~~~~f~~~~~~l~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l 478 (1496)
+...+.|+.++..+.+.. . + .+.+|.... .+-.+.+.++.....-++|. |. .+
T Consensus 375 dVRsl~vS~d~~~~~Sga-----~-~------SikiWn~~t-----~kciRTi~~~y~l~~~Fvpg------d~----~I 427 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASGA-----G-E------SIKIWNRDT-----LKCIRTITCGYILASKFVPG------DR----YI 427 (888)
T ss_pred heeEEEeecCceeeeecC-----C-C------cEEEEEccC-----cceeEEeccccEEEEEecCC------Cc----eE
Confidence 667777777777776643 1 2 388896311 11124555553222223322 11 35
Q ss_pred ecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccC
Q 000450 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1496)
Q Consensus 479 ~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~ 558 (1496)
.....+|-+.++|+... .+..++..|.+.++++...+++. .+++|+.|.+|++|.+...... ++..-..-
T Consensus 428 v~G~k~Gel~vfdlaS~----~l~Eti~AHdgaIWsi~~~pD~~----g~vT~saDktVkfWdf~l~~~~--~gt~~k~l 497 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASA----SLVETIRAHDGAIWSISLSPDNK----GFVTGSADKTVKFWDFKLVVSV--PGTQKKVL 497 (888)
T ss_pred EEeccCCceEEEEeehh----hhhhhhhccccceeeeeecCCCC----ceEEecCCcEEEEEeEEEEecc--Ccccceee
Confidence 56667788888887653 55667789999999999888888 9999999999999766543321 11000000
Q ss_pred CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCC
Q 000450 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1496)
Q Consensus 559 s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~ 638 (1496)
+-+..+++ .-...|.|+.++|| +.+|+.+=-|.||++|-+.+.+..-.+.+|.-||.++.++||
T Consensus 498 sl~~~rtL-el~ddvL~v~~Spd---------gk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~D------ 561 (888)
T KOG0306|consen 498 SLKHTRTL-ELEDDVLCVSVSPD---------GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPD------ 561 (888)
T ss_pred eeccceEE-eccccEEEEEEcCC---------CcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCC------
Confidence 00111222 23567999999998 899999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCC
Q 000450 639 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1496)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh 718 (1496)
+..++|||.|++|++|-++-|.|.++|-+|.+.|.+|.|-|...++.+++.| +.|+-||-+..+.++++.||
T Consensus 562 SklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD--------~kvKqWDg~kFe~iq~L~~H 633 (888)
T KOG0306|consen 562 SKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKD--------GKVKQWDGEKFEEIQKLDGH 633 (888)
T ss_pred cCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCc--------ceEEeechhhhhhheeeccc
Confidence 8999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 719 ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 719 ~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
...+.+.... .+|+.++ +.+.|.++|.|.-
T Consensus 634 ~~ev~cLav~------------~~G~~vv-----s~shD~sIRlwE~ 663 (888)
T KOG0306|consen 634 HSEVWCLAVS------------PNGSFVV-----SSSHDKSIRLWER 663 (888)
T ss_pred hheeeeeEEc------------CCCCeEE-----eccCCceeEeeec
Confidence 9988776332 1255544 4445999999973
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=295.08 Aligned_cols=214 Identities=24% Similarity=0.214 Sum_probs=178.0
Q ss_pred CcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEe
Q 000450 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1496)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~s 579 (1496)
.+...+.+|+..|+|+.+-.+. .+.+|+.|++|++| + ...|++.+.|+||...|+.|+.+
T Consensus 238 ~~~~~lsgHT~~VTCvrwGG~g-----liySgS~DrtIkvw--~-------------a~dG~~~r~lkGHahwvN~lals 297 (480)
T KOG0271|consen 238 TCVRTLSGHTASVTCVRWGGEG-----LIYSGSQDRTIKVW--R-------------ALDGKLCRELKGHAHWVNHLALS 297 (480)
T ss_pred eEEEEeccCccceEEEEEcCCc-----eEEecCCCceEEEE--E-------------ccchhHHHhhcccchheeeeecc
Confidence 3444567899999998854444 79999999999993 3 34578889999999999999988
Q ss_pred cCCCCcc------cCc---------------------CCCEEEEEeCCCcEEEEECCC-CceEEEEcccCCCEEEEEECC
Q 000450 580 RMVGTAK------GWS---------------------FNEVLVSGSMDCSIRIWDLGS-GNLITVMHHHVAPVRQIILSP 631 (1496)
Q Consensus 580 pd~~~~~------~~~---------------------~~~~L~SGs~DgtV~lWDl~t-g~~l~~~~~H~~~V~~l~~sP 631 (1496)
.|..... +++ .++.|+||++|+++.+|+-.. .+++..+.+|..-|+.+.|+|
T Consensus 298 Tdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP 377 (480)
T KOG0271|consen 298 TDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP 377 (480)
T ss_pred chhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC
Confidence 4431000 111 246799999999999999764 458899999999999999999
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 632 PQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 632 d~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
| +.+++|+|-|++|++||.++|+.+.+|+||-+.|+.|+|+.|.++|++|+.| .+++|||+++.++
T Consensus 378 d------~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkD--------sTLKvw~V~tkKl 443 (480)
T KOG0271|consen 378 D------GRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKD--------STLKVWDVRTKKL 443 (480)
T ss_pred C------ccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCC--------ceEEEEEeeeeee
Confidence 9 9999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred EEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeec
Q 000450 712 ERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1496)
Q Consensus 712 ~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~ 764 (1496)
...+.||..+++.+.+.++ |..+.++.- |..+|+|.
T Consensus 444 ~~DLpGh~DEVf~vDwspD------------G~rV~sggk-----dkv~~lw~ 479 (480)
T KOG0271|consen 444 KQDLPGHADEVFAVDWSPD------------GQRVASGGK-----DKVLRLWR 479 (480)
T ss_pred cccCCCCCceEEEEEecCC------------CceeecCCC-----ceEEEeec
Confidence 9999999999988877631 444444443 77788874
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-28 Score=288.12 Aligned_cols=506 Identities=16% Similarity=0.189 Sum_probs=323.2
Q ss_pred CCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccccccc
Q 000450 15 PSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNV 94 (1496)
Q Consensus 15 psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~ 94 (1496)
+...||++.|..+|..||+||.|+.|++||+-. ..-+..|.||...||..-
T Consensus 106 HK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~-----E~Gl~rL~GHkd~iT~~~------------------------ 156 (888)
T KOG0306|consen 106 HKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVG-----EEGLFRLRGHKDSITQAL------------------------ 156 (888)
T ss_pred cccceEEEEEcccCceEeecCCCccEEEEEecc-----ceeeEEeecchHHHhHHh------------------------
Confidence 555699999999999999999999999999972 234567899999999886
Q ss_pred cccccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCC-CeEEEEccc-ccccCCcccc--c----
Q 000450 95 MGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSN-PRYVCIGCC-FIDTNQLSDH--H---- 166 (1496)
Q Consensus 95 ~g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~-~~ll~~G~~-~id~~~l~~~--~---- 166 (1496)
|..+..+|+|.|.|+.|++||+.+.+|..+.-.+ ...+-.+.-+ .++++.|.. -+..|.+... .
T Consensus 157 ---F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~-----r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~ 228 (888)
T KOG0306|consen 157 ---FLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDH-----RGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETN 228 (888)
T ss_pred ---ccCCCeEEEEeccCceEEEEecccceeeeEEecc-----cceEEEEEEecceEEEEecCCceEEEEeeccccccccc
Confidence 4445788999999999999999999999874322 2333333322 344444331 1111111000 0
Q ss_pred cccccccccccc----ccCCCCCCCCccEEEEEECCceEE--EEEEec--------------------------------
Q 000450 167 SFESVEGDLVSE----DKEVPMKNPPKCTLVIVDTYGLTI--VQTVFH-------------------------------- 208 (1496)
Q Consensus 167 ~~~~v~~~~~~~----d~~~~~~~~~~~~I~v~D~~t~~~--l~~l~~-------------------------------- 208 (1496)
..-+........ +++.....+.+.++++.. .+.++ ++.+++
T Consensus 229 ~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~-g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl 307 (888)
T KOG0306|consen 229 RYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQ-GADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSL 307 (888)
T ss_pred ccceeeccceeeeccCCceeEEeecCcccEEEEe-cchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhH
Confidence 000000000000 000000111111111110 00000 000000
Q ss_pred --------CccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCccccccCCCcccCCCccceeeeccCcccC
Q 000450 209 --------GNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEG 280 (1496)
Q Consensus 209 --------~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~~~~~~~l~~~ek~i~~v~~~~~~~~~ 280 (1496)
.-.....|..+++.|++ +....++.-+++.+.++.++... .....+. .+.. ....+|-.+
T Consensus 308 ~~~i~r~~~ir~~~kiks~dv~~~~---~~~~~lv~l~nNtv~~ysl~~s~---~~~p~~~-----~~~~-i~~~GHR~d 375 (888)
T KOG0306|consen 308 SDEIKRLETIRTSAKIKSFDVTPSG---GTENTLVLLANNTVEWYSLENSG---KTSPEAD-----RTSN-IEIGGHRSD 375 (888)
T ss_pred HHHHHHHHheechhheeEEEEEecC---CcceeEEEeecCceEEEEeccCC---CCCcccc-----ccce-eeeccchhh
Confidence 00012446778888543 22335555789999999998731 1111111 1111 123458889
Q ss_pred ceEEEEecCCcEEEEEeCCeEEEEEcCCCcccceeeeecceeEeeCCCCCceeeeeEEeechhhhhhcccccccccccce
Q 000450 281 GHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYEN 360 (1496)
Q Consensus 281 ~~~va~s~dg~~l~t~~~~~~~~~l~d~~~~ige~~~~~~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 360 (1496)
++.+++|.+...+++++++...+|..++...+..+ .++ +..+..|... +..
T Consensus 376 VRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi------------~~~-y~l~~~Fvpg----------------d~~ 426 (888)
T KOG0306|consen 376 VRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTI------------TCG-YILASKFVPG----------------DRY 426 (888)
T ss_pred eeEEEeecCceeeeecCCCcEEEEEccCcceeEEe------------ccc-cEEEEEecCC----------------Cce
Confidence 99999999999999999999888766655533322 111 4556666644 247
Q ss_pred EEEEcCCCcEEEEEEecCCCCCcccCeeeecCcCCCCCceeeEEEeecceeeeeeeeeeccccccccccCeEEEEEcccc
Q 000450 361 FAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQK 440 (1496)
Q Consensus 361 ~~vw~~~G~~~l~~l~~~~~~~~~~~~~~ip~~~~~~~~~~~~~f~~~~~~l~~v~s~~~~~~~~~~~~p~v~vwsl~~~ 440 (1496)
++++..+|...+|.+...... . .|++ ..+.-..+.-.+++...+.... +.++++|+...-
T Consensus 427 Iv~G~k~Gel~vfdlaS~~l~-E-----ti~A---HdgaIWsi~~~pD~~g~vT~sa-----------DktVkfWdf~l~ 486 (888)
T KOG0306|consen 427 IVLGTKNGELQVFDLASASLV-E-----TIRA---HDGAIWSISLSPDNKGFVTGSA-----------DKTVKFWDFKLV 486 (888)
T ss_pred EEEeccCCceEEEEeehhhhh-h-----hhhc---cccceeeeeecCCCCceEEecC-----------CcEEEEEeEEEE
Confidence 889999999999988533211 0 1110 0111112222333333333221 233555542111
Q ss_pred CCCCCcceeEeccCCceeeeccccccccCCCCcccceeecccccCccccccccCCCCCCCcccccccCCccEEEEEeecc
Q 000450 441 HSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISE 520 (1496)
Q Consensus 441 ~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~ 520 (1496)
.+..+.+.|. +++-. .....-+..|.|+.+.++
T Consensus 487 ~~~~gt~~k~------------------------------------lsl~~-----------~rtLel~ddvL~v~~Spd 519 (888)
T KOG0306|consen 487 VSVPGTQKKV------------------------------------LSLKH-----------TRTLELEDDVLCVSVSPD 519 (888)
T ss_pred eccCccccee------------------------------------eeecc-----------ceEEeccccEEEEEEcCC
Confidence 1000000000 00000 001122467888885555
Q ss_pred ccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCC
Q 000450 521 SFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD 600 (1496)
Q Consensus 521 ~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~D 600 (1496)
.. +++.|--|.+++|+..| +.+..-.|+||.-+|.|+..+|| +.+++|||.|
T Consensus 520 gk----~LaVsLLdnTVkVyflD---------------tlKFflsLYGHkLPV~smDIS~D---------SklivTgSAD 571 (888)
T KOG0306|consen 520 GK----LLAVSLLDNTVKVYFLD---------------TLKFFLSLYGHKLPVLSMDISPD---------SKLIVTGSAD 571 (888)
T ss_pred Cc----EEEEEeccCeEEEEEec---------------ceeeeeeecccccceeEEeccCC---------cCeEEeccCC
Confidence 55 89999999999997766 34667789999999999999998 8999999999
Q ss_pred CcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCC
Q 000450 601 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP 680 (1496)
Q Consensus 601 gtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spd 680 (1496)
.+|++|-+.-|.|...|.+|...|.+|.|-|+ .+.|.++|.|+.|+-||-+..++++.+.+|...|++++.+|+
T Consensus 572 KnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~------~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~ 645 (888)
T KOG0306|consen 572 KNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPK------THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPN 645 (888)
T ss_pred CceEEeccccchhhhhhhcccCceeEEEEccc------ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCC
Confidence 99999999999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 681 RGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 681 g~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
|+|+++++.| .+|++|....
T Consensus 646 G~~vvs~shD--------~sIRlwE~td 665 (888)
T KOG0306|consen 646 GSFVVSSSHD--------KSIRLWERTD 665 (888)
T ss_pred CCeEEeccCC--------ceeEeeeccC
Confidence 9999999999 9999998754
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-25 Score=262.21 Aligned_cols=424 Identities=17% Similarity=0.175 Sum_probs=279.7
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCccccccccccccccc
Q 000450 16 SHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVM 95 (1496)
Q Consensus 16 sh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~ 95 (1496)
-..|+++.+|.|.++|++|+.|-+++||+++. .+.-....+.||+.+|.+.-
T Consensus 145 fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~---~k~~~~~~l~gHkd~Vvacf------------------------- 196 (893)
T KOG0291|consen 145 FDDITSIDWSDDSRLLVTGSRDLSARLFGVDG---NKNLFTYALNGHKDYVVACF------------------------- 196 (893)
T ss_pred ccceeEEEeccCCceEEeccccceEEEEEecc---ccccceEeccCCCcceEEEE-------------------------
Confidence 34699999999999999999999999999984 22222456789999997775
Q ss_pred ccccCCCCEEEEEeCCCeEEEEECCCC--eEEE--------------------------e-ecCCCC--CCCCcEEEEcC
Q 000450 96 GKSSLDNGALISACTDGVLCVWSRSSG--HCRR--------------------------R-RKLPPW--VGSPSVICTLP 144 (1496)
Q Consensus 96 g~~s~d~~~LaSas~DG~l~VWdv~~G--~ci~--------------------------~-~~l~~~--~g~~~~i~~~s 144 (1496)
|..|+.-++|.|.||.+++|..+.. .... . .+-++. .++.....+|+
T Consensus 197 --F~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH 274 (893)
T KOG0291|consen 197 --FGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFH 274 (893)
T ss_pred --eccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeecc
Confidence 5667777999999999999987711 0000 0 000000 00112223444
Q ss_pred CCCeEEEEcccccccCCcccccccccccccccccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeec
Q 000450 145 SNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSL 224 (1496)
Q Consensus 145 ~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~ 224 (1496)
+...++++|.. ++...+++..+..++..+.-+. -+|..+.|...
T Consensus 275 ~~t~~lvvgFs---------------------------------sG~f~LyelP~f~lih~LSis~---~~I~t~~~N~t 318 (893)
T KOG0291|consen 275 KGTNLLVVGFS---------------------------------SGEFGLYELPDFNLIHSLSISD---QKILTVSFNST 318 (893)
T ss_pred CCceEEEEEec---------------------------------CCeeEEEecCCceEEEEeeccc---ceeeEEEeccc
Confidence 45555555543 3566677777777777665422 23777777643
Q ss_pred cCCCCceeEEEE-eCCCcEEEEECCCCCccccccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeEEE
Q 000450 225 GEDMGKHYGLMV-DSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIF 303 (1496)
Q Consensus 225 ~~d~~~~~llva-s~dG~V~lWdl~~~~~~~~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~~ 303 (1496)
+ +.+.+| +.-|.+.||+...+. -+..+++|.....+++++|||+.+++++.++ .+
T Consensus 319 G-----DWiA~g~~klgQLlVweWqsEs------------------YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg-KV 374 (893)
T KOG0291|consen 319 G-----DWIAFGCSKLGQLLVWEWQSES------------------YVLKQQGHSDRITSLAYSPDGQLIATGAEDG-KV 374 (893)
T ss_pred C-----CEEEEcCCccceEEEEEeeccc------------------eeeeccccccceeeEEECCCCcEEEeccCCC-cE
Confidence 3 678888 666999999987652 1245677899999999999999999988876 45
Q ss_pred EEcCCCcccceeeeecceeEeeCCCCCceeeeeEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEecCCCCCc
Q 000450 304 RLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFD 383 (1496)
Q Consensus 304 ~l~d~~~~ige~~~~~~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~ 383 (1496)
++||..+ -+|... |.+. ..
T Consensus 375 KvWn~~S----------gfC~vT-----------FteH-------------------------------------ts--- 393 (893)
T KOG0291|consen 375 KVWNTQS----------GFCFVT-----------FTEH-------------------------------------TS--- 393 (893)
T ss_pred EEEeccC----------ceEEEE-----------eccC-------------------------------------CC---
Confidence 6676654 122211 1000 00
Q ss_pred ccCeeeecCcCCCCCceeeEEEeecceeeeeeeeeeccccccccccCeEEEEEccccCCCCCcceeEeccCCceeeeccc
Q 000450 384 YEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNN 463 (1496)
Q Consensus 384 ~~~~~~ip~~~~~~~~~~~~~f~~~~~~l~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~ 463 (1496)
. .--+.|...++.+++
T Consensus 394 --------~-------Vt~v~f~~~g~~lls------------------------------------------------- 409 (893)
T KOG0291|consen 394 --------G-------VTAVQFTARGNVLLS------------------------------------------------- 409 (893)
T ss_pred --------c-------eEEEEEEecCCEEEE-------------------------------------------------
Confidence 0 001112222222222
Q ss_pred cccccCCCCcccceeecccccCccccccccCCCCCCCcccccccCC-ccEEEEEeeccccccCCEEEEEEcCCcEEEEEe
Q 000450 464 STFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKE-KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQF 542 (1496)
Q Consensus 464 ~~~~~~~dG~~i~~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~-~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~ 542 (1496)
++-+|+++.||+.+- +...+|.... ..-.|+++-+.+ .+++++.-....|..
T Consensus 410 -----------------sSLDGtVRAwDlkRY----rNfRTft~P~p~QfscvavD~sG-----elV~AG~~d~F~Ifv- 462 (893)
T KOG0291|consen 410 -----------------SSLDGTVRAWDLKRY----RNFRTFTSPEPIQFSCVAVDPSG-----ELVCAGAQDSFEIFV- 462 (893)
T ss_pred -----------------eecCCeEEeeeeccc----ceeeeecCCCceeeeEEEEcCCC-----CEEEeeccceEEEEE-
Confidence 122334455554331 1222222211 123344433323 344444333333322
Q ss_pred cccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCC
Q 000450 543 DLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVA 622 (1496)
Q Consensus 543 ~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~ 622 (1496)
|+.++|+.+-.+.||.++|.+|+|+|+ +..|+|||.|.||++||+........--.+..
T Consensus 463 ------------WS~qTGqllDiLsGHEgPVs~l~f~~~---------~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~s 521 (893)
T KOG0291|consen 463 ------------WSVQTGQLLDILSGHEGPVSGLSFSPD---------GSLLASGSWDKTVRIWDIFSSSGTVETLEIRS 521 (893)
T ss_pred ------------EEeecCeeeehhcCCCCcceeeEEccc---------cCeEEeccccceEEEEEeeccCceeeeEeecc
Confidence 446788999999999999999999998 89999999999999999976543333334567
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecC--------------------CCCCcEEEEEcCCCC
Q 000450 623 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG--------------------HPNYPAKVVWDCPRG 682 (1496)
Q Consensus 623 ~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~g--------------------H~~~V~~V~~spdg~ 682 (1496)
.|..+.|.|+ |+-+|.+..||.|.+||.+.+..+..+.| .....+.+++++||.
T Consensus 522 dvl~vsfrPd------G~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~ 595 (893)
T KOG0291|consen 522 DVLAVSFRPD------GKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGK 595 (893)
T ss_pred ceeEEEEcCC------CCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCC
Confidence 7999999999 99999999999999999987654433321 123678999999999
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 683 YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 683 ~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
++++|+.. ..|++||+.++-+++.+.
T Consensus 596 ~IlAgG~s--------n~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 596 CILAGGES--------NSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred EEEecCCc--------ccEEEEECchhheeeeEE
Confidence 99999988 899999999999888775
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=270.93 Aligned_cols=142 Identities=20% Similarity=0.238 Sum_probs=131.3
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.+++|+.|..-+| ||..++.++-.|.||...|..++|+|+ |..|+|||.|++++||
T Consensus 317 L~~tGGlD~~~Rv---------------WDlRtgr~im~L~gH~k~I~~V~fsPN---------Gy~lATgs~Dnt~kVW 372 (459)
T KOG0272|consen 317 LAATGGLDSLGRV---------------WDLRTGRCIMFLAGHIKEILSVAFSPN---------GYHLATGSSDNTCKVW 372 (459)
T ss_pred eeeccCccchhhe---------------eecccCcEEEEecccccceeeEeECCC---------ceEEeecCCCCcEEEe
Confidence 4566666666666 556778899999999999999999998 8999999999999999
Q ss_pred ECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEE
Q 000450 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIAC 686 (1496)
Q Consensus 607 Dl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~t 686 (1496)
|++..+.+.++.+|..-|+.|.|+|.. |.+|+|+|.|++++||.-+++.+++++.||.+.|.++..+||+.++++
T Consensus 373 DLR~r~~ly~ipAH~nlVS~Vk~~p~~-----g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t 447 (459)
T KOG0272|consen 373 DLRMRSELYTIPAHSNLVSQVKYSPQE-----GYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIAT 447 (459)
T ss_pred eecccccceecccccchhhheEecccC-----CeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEE
Confidence 999999999999999999999999964 889999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCEEEEEE
Q 000450 687 LCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 687 gs~D~sg~~D~dg~V~VWD 705 (1496)
++.| .++++|.
T Consensus 448 ~s~D--------RT~KLW~ 458 (459)
T KOG0272|consen 448 SSFD--------RTIKLWR 458 (459)
T ss_pred eccC--------ceeeecc
Confidence 9999 9999995
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-23 Score=250.61 Aligned_cols=524 Identities=15% Similarity=0.130 Sum_probs=313.7
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccccccccccccC
Q 000450 21 ATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSL 100 (1496)
Q Consensus 21 ava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g~~s~ 100 (1496)
-+.|++||..+++-. .+.|-++|+.. + +....-..+..-|++++ .||
T Consensus 19 nl~ft~dG~sviSPv-GNrvsv~dLkn--N---~S~Tl~~e~~~NI~~ia---------------------------lSp 65 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPV-GNRVSVFDLKN--N---KSYTLPLETRYNITRIA---------------------------LSP 65 (893)
T ss_pred cEEECCCCCEEEecc-CCEEEEEEccC--C---cceeEEeecCCceEEEE---------------------------eCC
Confidence 578999998888643 35789999983 2 23334457888899998 789
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCccccccccccccccccccc
Q 000450 101 DNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDK 180 (1496)
Q Consensus 101 d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~~~~d~ 180 (1496)
++.+|++..+.|...+-+......++..++. .+....-++|+|+++++|+-
T Consensus 66 ~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk----~~v~~i~fSPng~~fav~~g------------------------- 116 (893)
T KOG0291|consen 66 DGTLLLAVDERGRALLVSLLSRSVLHRFNFK----RGVGAIKFSPNGKFFAVGCG------------------------- 116 (893)
T ss_pred CceEEEEEcCCCcEEEEecccceeeEEEeec----CccceEEECCCCcEEEEEec-------------------------
Confidence 9999999999999988888776666655443 23445578899999988875
Q ss_pred CCCCCCCCccEEEEEECCceE-------EEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCcc
Q 000450 181 EVPMKNPPKCTLVIVDTYGLT-------IVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHL 253 (1496)
Q Consensus 181 ~~~~~~~~~~~I~v~D~~t~~-------~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~ 253 (1496)
.-+.||...... .+...+-|+ -+-|..++++. |. ..+++|+.|-.++||.++..++
T Consensus 117 ---------n~lqiw~~P~~~~~~~~pFvl~r~~~g~--fddi~si~Ws~---DS--r~l~~gsrD~s~rl~~v~~~k~- 179 (893)
T KOG0291|consen 117 ---------NLLQIWHAPGEIKNEFNPFVLHRTYLGH--FDDITSIDWSD---DS--RLLVTGSRDLSARLFGVDGNKN- 179 (893)
T ss_pred ---------ceeEEEecCcchhcccCcceEeeeecCC--ccceeEEEecc---CC--ceEEeccccceEEEEEeccccc-
Confidence 344555443211 122222222 34488888884 33 3456669999999999987631
Q ss_pred ccccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeEE-EEEcCCCcccceeeeecceeEeeCCCCCce
Q 000450 254 DREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCI-FRLLGSGSTIGEICFVDNLFCLEGGSTNSY 332 (1496)
Q Consensus 254 ~~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~-~~l~d~~~~ige~~~~~~~l~~~~~~~~~~ 332 (1496)
-.. ...++|...+..--|..+...+.+++.++.+ +|-++..- . ..-..+....+
T Consensus 180 --~~~-------------~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P--~------~~~~~~kd~eg-- 234 (893)
T KOG0291|consen 180 --LFT-------------YALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRP--P------ELDKAEKDEEG-- 234 (893)
T ss_pred --cce-------------EeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCC--c------ccccccccccc--
Confidence 001 1233455555555567777778888888753 32222110 0 00000000000
Q ss_pred eeeeEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEecCCCCCcccCeeeecCcCCCCCceeeE-EEeeccee
Q 000450 333 VIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSI-HFIQMSLY 411 (1496)
Q Consensus 333 ~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~~~~~~~ip~~~~~~~~~~~~-~f~~~~~~ 411 (1496)
.++.......+. ..++ .+|..-.+- +.++....++ .+.+....++.+ .|...-..
T Consensus 235 --------~~d~~~~~~~Ee----k~~~-~~~~k~~k~------~ln~~~~kvt-----aa~fH~~t~~lvvgFssG~f~ 290 (893)
T KOG0291|consen 235 --------SDDEEMDEDGEE----KTHK-IFWYKTKKH------YLNQNSSKVT-----AAAFHKGTNLLVVGFSSGEFG 290 (893)
T ss_pred --------cccccccccchh----hhcc-eEEEEEEee------eeccccccee-----eeeccCCceEEEEEecCCeeE
Confidence 000000000000 0000 011110000 0000000000 000111111111 11111111
Q ss_pred eeeeeeeeccccccccccCeEE-EEEccccCCCCCcc-eeEeccCCceeeeccccccccCCCCcccceeecccccCcccc
Q 000450 412 LLRMETVCFHVEETSQWRPYIS-VWSLSQKHSGPGKQ-CRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPR 489 (1496)
Q Consensus 412 l~~v~s~~~~~~~~~~~~p~v~-vwsl~~~~~~~~~~-~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~i~l 489 (1496)
|+-+. ... +..+.... ...+ .-+-.+| +|. -.-+..-+.+-+
T Consensus 291 LyelP--------------~f~lih~LSis~--~~I~t~~~N~tG----DWi----------------A~g~~klgQLlV 334 (893)
T KOG0291|consen 291 LYELP--------------DFNLIHSLSISD--QKILTVSFNSTG----DWI----------------AFGCSKLGQLLV 334 (893)
T ss_pred EEecC--------------CceEEEEeeccc--ceeeEEEecccC----CEE----------------EEcCCccceEEE
Confidence 11111 010 00000000 0000 0000112 121 011122344556
Q ss_pred ccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecC
Q 000450 490 SEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGH 569 (1496)
Q Consensus 490 Wd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH 569 (1496)
|+...... +..-++|...+++++|.++.. ++++|++||.|+| |+..++.|..++..|
T Consensus 335 weWqsEsY----VlKQQgH~~~i~~l~YSpDgq----~iaTG~eDgKVKv---------------Wn~~SgfC~vTFteH 391 (893)
T KOG0291|consen 335 WEWQSESY----VLKQQGHSDRITSLAYSPDGQ----LIATGAEDGKVKV---------------WNTQSGFCFVTFTEH 391 (893)
T ss_pred EEeeccce----eeeccccccceeeEEECCCCc----EEEeccCCCcEEE---------------EeccCceEEEEeccC
Confidence 66554322 233478999999999655555 9999999999999 346678899999999
Q ss_pred CccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccC-CCEEEEEECCCCCCCCCCCEEEEEeCC
Q 000450 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHV-APVRQIILSPPQTEHPWSDCFLSVGED 648 (1496)
Q Consensus 570 ~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~-~~V~~l~~sPd~~~~~~g~~l~Sgs~D 648 (1496)
+..|+.+.|+.. ++.++|.|.||+|+.||+......++|.... -...+|+..|. |..++.|+.|
T Consensus 392 ts~Vt~v~f~~~---------g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~s------GelV~AG~~d 456 (893)
T KOG0291|consen 392 TSGVTAVQFTAR---------GNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS------GELVCAGAQD 456 (893)
T ss_pred CCceEEEEEEec---------CCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCC------CCEEEeeccc
Confidence 999999999986 8999999999999999999999999997643 23568888887 8999999988
Q ss_pred C-cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeee
Q 000450 649 F-SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHF 727 (1496)
Q Consensus 649 g-sV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~ 727 (1496)
. .|.+|++++|+.+-.+.||.++|.+++|+|++..|++++.| .+|++||+-......+--.+.+.++.+.|
T Consensus 457 ~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD--------kTVRiW~if~s~~~vEtl~i~sdvl~vsf 528 (893)
T KOG0291|consen 457 SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD--------KTVRIWDIFSSSGTVETLEIRSDVLAVSF 528 (893)
T ss_pred eEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc--------ceEEEEEeeccCceeeeEeeccceeEEEE
Confidence 5 79999999999999999999999999999999999999988 99999999654222222234445555556
Q ss_pred ecccccccccceEEcCCccccccceeeccCCcEEeecccccccc
Q 000450 728 CKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERG 771 (1496)
Q Consensus 728 ~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~~ 771 (1496)
.|. |.......+ ||.|-+|+.+...+.
T Consensus 529 rPd------------G~elaVaTl-----dgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 529 RPD------------GKELAVATL-----DGQITFFDIKEAVQV 555 (893)
T ss_pred cCC------------CCeEEEEEe-----cceEEEEEhhhceee
Confidence 531 333333333 889999998665544
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=263.17 Aligned_cols=605 Identities=13% Similarity=0.116 Sum_probs=352.5
Q ss_pred eeeEecCCCCCC---------ceEEEEEEcCCCCEEEEE--eCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeecc
Q 000450 5 SVACIWSGTPPS---------HRVTATSALTQPPTLYTG--GSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICY 73 (1496)
Q Consensus 5 ~~~~lw~~~~ps---------h~Vtava~SpDg~~LaTG--s~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~ 73 (1496)
=|++|+...-.+ .++||+|||++|+++||| +..-.+++|++.. ...++.|..|...|+|++
T Consensus 58 CvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~-----h~vVAEfvdHKY~vtcva--- 129 (1080)
T KOG1408|consen 58 CVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAF-----HGVVAEFVDHKYNVTCVA--- 129 (1080)
T ss_pred cEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeecc-----ccchhhhhhccccceeee---
Confidence 367777766543 259999999999999998 4777899999985 346778899999999999
Q ss_pred ccccccCcccccccccccccccccccCCCCEEEEEeC--CCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEE-
Q 000450 74 PAMVSRDGKAEHWKAENSSNVMGKSSLDNGALISACT--DGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYV- 150 (1496)
Q Consensus 74 ~~~~s~dg~~~~~~~~~~~~~~g~~s~d~~~LaSas~--DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll- 150 (1496)
|+|.++|++|.+. |-.|.+||+..--.....+. .+...+..|++++-|+
T Consensus 130 ------------------------Fsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnki----ss~Vsav~fsEdgSYfv 181 (1080)
T KOG1408|consen 130 ------------------------FSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKI----SSVVSAVAFSEDGSYFV 181 (1080)
T ss_pred ------------------------ecCCCcEEEeeccccceEEEhhhhhhccccccccc----ceeEEEEEEccCCceee
Confidence 6889999999765 77888999874433333333 2345677889998764
Q ss_pred EEcccccccCCcccccccc----cccccccccccCCCCCCCCccEEEE-----EECCceEEEEEEecCccccCC------
Q 000450 151 CIGCCFIDTNQLSDHHSFE----SVEGDLVSEDKEVPMKNPPKCTLVI-----VDTYGLTIVQTVFHGNLSIGP------ 215 (1496)
Q Consensus 151 ~~G~~~id~~~l~~~~~~~----~v~~~~~~~d~~~~~~~~~~~~I~v-----~D~~t~~~l~~l~~~~~s~~~------ 215 (1496)
.+|...+.-|.|.....++ -.....++-|..........|.+.+ |.......+..+.+.++--.|
T Consensus 182 T~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTT 261 (1080)
T KOG1408|consen 182 TSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTT 261 (1080)
T ss_pred eeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhcc
Confidence 4566556666665543220 1111111212211112222222221 111111111122221111112
Q ss_pred -eEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCcccccc-----C---CCcccCCCccceeeeccCcccCceEEEE
Q 000450 216 -WKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREE-----G---NGLCKSSSQLDMAILQNGVVEGGHLVSV 286 (1496)
Q Consensus 216 -i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~~~~-----~---~~l~~~ek~i~~v~~~~~~~~~~~~va~ 286 (1496)
.+|++++. ..+++|+.+|+|+|+..++..-....+ + ..+.+.+ .+.. ...++.+.+-..+.|
T Consensus 262 nAnCIcVs~-------r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~-~~~s-~~~~a~fPD~IA~~F 332 (1080)
T KOG1408|consen 262 NANCICVSS-------RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPE-PKNS-ESSPAIFPDAIACQF 332 (1080)
T ss_pred ccceeeeec-------ceEEEeeccceeeecCcchhhhccccccccccccchhhccccc-cccc-ccCcccCCceeEEEe
Confidence 35666661 457888999999999876531100000 0 0111111 1100 112223333456667
Q ss_pred ecCCcEEEEEeCCeEEEEEcCCCcc--ccee-eeecceeEeeCCCCCceeeeeEEeechhhhhhcccccccccccceEEE
Q 000450 287 ATCGNIIALVLKDHCIFRLLGSGST--IGEI-CFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAV 363 (1496)
Q Consensus 287 s~dg~~l~t~~~~~~~~~l~d~~~~--ige~-~~~~~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~v 363 (1496)
.+....+..+-.++-++ +||..++ +|.. .+..+-.|.- +...+.. .++.....+ -..+.|+.
T Consensus 333 det~~klscVYndhSlY-vWDvrD~~kvgk~~s~lyHS~ciW---------~Ve~~p~----nv~~~~~ac-lp~~cF~T 397 (1080)
T KOG1408|consen 333 DETTDKLSCVYNDHSLY-VWDVRDVNKVGKCSSMLYHSACIW---------DVENLPC----NVHSPTAAC-LPRGCFTT 397 (1080)
T ss_pred cCCCceEEEEEcCceEE-EEeccccccccceeeeeeccceee---------eeccccc----cccCccccc-CCccceeE
Confidence 76655566665555332 4666652 2222 1111111110 0000000 000110000 01346788
Q ss_pred EcCCCcEEEEEEec--CCCCCcccCee-eecCcCCCCCceeeEEEeecceeeeeeeeeeccccccccccCeEEEEEcccc
Q 000450 364 WDNRGSAIVYAISY--MNEKFDYEPHF-EIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQK 440 (1496)
Q Consensus 364 w~~~G~~~l~~l~~--~~~~~~~~~~~-~ip~~~~~~~~~~~~~f~~~~~~l~~v~s~~~~~~~~~~~~p~v~vwsl~~~ 440 (1496)
.+.||.+++|.+.+ .++.+++..+. +..+.++..+. -+.+.-....-++......|++...+-.+
T Consensus 398 CSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~---------~q~~~d~~~~~fdka~~s~~d~r~G~R~~--- 465 (1080)
T KOG1408|consen 398 CSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDST---------QQIMHDASAGIFDKALVSTCDSRFGFRAL--- 465 (1080)
T ss_pred ecCCCcEEEeecccccccceeecccchhhhhcCccccCc---------hhhhhhccCCcccccchhhcCcccceEEE---
Confidence 88888888888865 33344332221 11111111111 00000000000111111111111111100
Q ss_pred CCCCCcceeEeccCCceeeeccccccccCCCCcccceeecccccCccccccccCCCCCCCcccccccCCccEEEEEeecc
Q 000450 441 HSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISE 520 (1496)
Q Consensus 441 ~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~ 520 (1496)
.+.++|. .++.....|.++++++.+- .....+..|...|.|+.|...
T Consensus 466 --------------------------~vSp~gq---hLAsGDr~GnlrVy~Lq~l----~~~~~~eAHesEilcLeyS~p 512 (1080)
T KOG1408|consen 466 --------------------------AVSPDGQ---HLASGDRGGNLRVYDLQEL----EYTCFMEAHESEILCLEYSFP 512 (1080)
T ss_pred --------------------------EECCCcc---eecccCccCceEEEEehhh----hhhhheecccceeEEEeecCc
Confidence 1223441 2555556688888887653 334456899999999985433
Q ss_pred ccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCC
Q 000450 521 SFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD 600 (1496)
Q Consensus 521 ~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~D 600 (1496)
. ..-..|++|+.|.-|.|++.. ..-.+++++.+|...|+++.|.-. + .+..++|++.|
T Consensus 513 ~-~~~kLLASasrdRlIHV~Dv~--------------rny~l~qtld~HSssITsvKFa~~-----g--ln~~MiscGAD 570 (1080)
T KOG1408|consen 513 V-LTNKLLASASRDRLIHVYDVK--------------RNYDLVQTLDGHSSSITSVKFACN-----G--LNRKMISCGAD 570 (1080)
T ss_pred h-hhhHhhhhccCCceEEEEecc--------------cccchhhhhcccccceeEEEEeec-----C--CceEEEeccCc
Confidence 2 111278999999999993321 122457889999999999999764 1 14689999999
Q ss_pred CcEEEEECCCCceEEEEccc-----CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecC---CCCCc
Q 000450 601 CSIRIWDLGSGNLITVMHHH-----VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG---HPNYP 672 (1496)
Q Consensus 601 gtV~lWDl~tg~~l~~~~~H-----~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~g---H~~~V 672 (1496)
+.|.+--.....-...|.-| ...++.+++.|. .+++++++.|+.|+|||+++++..+.|.| |.+..
T Consensus 571 ksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~------~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~l 644 (1080)
T KOG1408|consen 571 KSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT------SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDL 644 (1080)
T ss_pred hhhheehhccccCceeccccccccccceEEEeeeCCC------cceEEEEecccceEEEeccccceeeeecccccCCCce
Confidence 87754333211111222222 346889999998 78999999999999999999999999975 66678
Q ss_pred EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccce
Q 000450 673 AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLL 752 (1496)
Q Consensus 673 ~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~ 752 (1496)
..+...|.|-||++.|.| .++.++|..+|+++..+.||...++.+.|.+. -.++.
T Consensus 645 IKv~lDPSgiY~atScsd--------ktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nD-----------------CkHlI 699 (1080)
T KOG1408|consen 645 IKVILDPSGIYLATSCSD--------KTLCFVDFVSGECVAQMTGHSEAVTGVKFLND-----------------CKHLI 699 (1080)
T ss_pred EEEEECCCccEEEEeecC--------CceEEEEeccchhhhhhcCcchheeeeeeccc-----------------chhhe
Confidence 899999999999999999 99999999999999999999998888877631 12345
Q ss_pred eeccCCcEEeecccc
Q 000450 753 PIHEDGTFRQSQIQN 767 (1496)
Q Consensus 753 ~~~~D~~ir~W~l~~ 767 (1496)
+++.|+.|-+|.+..
T Consensus 700 SvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 700 SVSGDGCIFVWKLPL 714 (1080)
T ss_pred eecCCceEEEEECch
Confidence 667799999998743
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-23 Score=239.63 Aligned_cols=532 Identities=12% Similarity=0.077 Sum_probs=313.6
Q ss_pred CCCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCccccccccccccc
Q 000450 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1496)
Q Consensus 14 ~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~ 93 (1496)
-++|++|...+||.|-++|+|...|.|++||.. +.+.-.+..+.--+++|..|+
T Consensus 57 EH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt---~~~hiLKnef~v~aG~I~Di~----------------------- 110 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTT---QKEHILKNEFQVLAGPIKDIS----------------------- 110 (603)
T ss_pred cccceeEEEEeCCCceEEeecCCcCcEEEEecc---Ccceeeeeeeeecccccccce-----------------------
Confidence 467999999999999999999999999999987 334455666777788999998
Q ss_pred ccccccCCCCEEEEEeCC----CeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCC-CC-eEEEEcccccccCCcccccc
Q 000450 94 VMGKSSLDNGALISACTD----GVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPS-NP-RYVCIGCCFIDTNQLSDHHS 167 (1496)
Q Consensus 94 ~~g~~s~d~~~LaSas~D----G~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~-~~-~ll~~G~~~id~~~l~~~~~ 167 (1496)
++.|+++++..++. |.+.+||. |.-+-...-+ ......+.|.+ .+ |.+.+|.+
T Consensus 111 ----Wd~ds~RI~avGEGrerfg~~F~~DS--G~SvGei~Gh---Sr~ins~~~KpsRPfRi~T~sdD------------ 169 (603)
T KOG0318|consen 111 ----WDFDSKRIAAVGEGRERFGHVFLWDS--GNSVGEITGH---SRRINSVDFKPSRPFRIATGSDD------------ 169 (603)
T ss_pred ----eCCCCcEEEEEecCccceeEEEEecC--CCccceeecc---ceeEeeeeccCCCceEEEeccCC------------
Confidence 57778888887763 45667774 4332222111 11122234443 33 44444444
Q ss_pred cccccccccccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEEC
Q 000450 168 FESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPI 247 (1496)
Q Consensus 168 ~~~v~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl 247 (1496)
..|.+|+-.=.+.-.+... +...|+++.++ |||.. .+.++.||.+-++|=
T Consensus 170 ----------------------n~v~ffeGPPFKFk~s~r~---HskFV~~VRys---PDG~~--Fat~gsDgki~iyDG 219 (603)
T KOG0318|consen 170 ----------------------NTVAFFEGPPFKFKSSFRE---HSKFVNCVRYS---PDGSR--FATAGSDGKIYIYDG 219 (603)
T ss_pred ----------------------CeEEEeeCCCeeeeecccc---cccceeeEEEC---CCCCe--EEEecCCccEEEEcC
Confidence 5666665433333333322 33458999998 45553 566699999999985
Q ss_pred CCCCccccccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCC--cccceeeeecceeEee
Q 000450 248 SKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSG--STIGEICFVDNLFCLE 325 (1496)
Q Consensus 248 ~~~~~~~~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~~~l~d~~--~~ige~~~~~~~l~~~ 325 (1496)
..+ +.+.+- ....+|.+++..++++||+..+++++.+.- .++||.. ..+.++...++
T Consensus 220 ktg--------e~vg~l-------~~~~aHkGsIfalsWsPDs~~~~T~SaDkt-~KIWdVs~~slv~t~~~~~~----- 278 (603)
T KOG0318|consen 220 KTG--------EKVGEL-------EDSDAHKGSIFALSWSPDSTQFLTVSADKT-IKIWDVSTNSLVSTWPMGST----- 278 (603)
T ss_pred CCc--------cEEEEe-------cCCCCccccEEEEEECCCCceEEEecCCce-EEEEEeeccceEEEeecCCc-----
Confidence 443 222221 223458888999999999999999887752 3446544 34444322211
Q ss_pred CCCCCceeeeeEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEecCCCCCcccCeeeecCcCCCCCc-eeeEE
Q 000450 326 GGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGV-KFSIH 404 (1496)
Q Consensus 326 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~~~~~~~ip~~~~~~~~-~~~~~ 404 (1496)
.....+|..+- . ..++.=+.+|....++..... . +.+-..++. .-.+.
T Consensus 279 ---v~dqqvG~lWq-k-----------------d~lItVSl~G~in~ln~~d~~-~---------~~~i~GHnK~ITaLt 327 (603)
T KOG0318|consen 279 ---VEDQQVGCLWQ-K-----------------DHLITVSLSGTINYLNPSDPS-V---------LKVISGHNKSITALT 327 (603)
T ss_pred ---hhceEEEEEEe-C-----------------CeEEEEEcCcEEEEecccCCC-h---------hheecccccceeEEE
Confidence 01122333332 1 133333444444333322111 0 011111111 11233
Q ss_pred EeecceeeeeeeeeeccccccccccCeEEEEEccccCCCCCcceeEeccCCceeeeccccccccCCCCcccceeeccccc
Q 000450 405 FIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQ 484 (1496)
Q Consensus 405 f~~~~~~l~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~ 484 (1496)
-..++.++++.. . +.++.-|..... ..+++..++..-.+--.. ....| .+.+...+
T Consensus 328 v~~d~~~i~Sgs-----y------DG~I~~W~~~~g-----~~~~~~g~~h~nqI~~~~----~~~~~----~~~t~g~D 383 (603)
T KOG0318|consen 328 VSPDGKTIYSGS-----Y------DGHINSWDSGSG-----TSDRLAGKGHTNQIKGMA----ASESG----ELFTIGWD 383 (603)
T ss_pred EcCCCCEEEeec-----c------CceEEEEecCCc-----cccccccccccceEEEEe----ecCCC----cEEEEecC
Confidence 345566676643 2 334777763211 111222222100000000 00011 24455556
Q ss_pred CccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEE
Q 000450 485 DTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQ 564 (1496)
Q Consensus 485 ~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~ 564 (1496)
.+++.-++..+.........+. +... ++++.++.. .++..+ ++.|.+ ++. . ....
T Consensus 384 d~l~~~~~~~~~~t~~~~~~lg-~QP~--~lav~~d~~----~avv~~-~~~iv~--l~~------------~---~~~~ 438 (603)
T KOG0318|consen 384 DTLRVISLKDNGYTKSEVVKLG-SQPK--GLAVLSDGG----TAVVAC-ISDIVL--LQD------------Q---TKVS 438 (603)
T ss_pred CeEEEEecccCcccccceeecC-CCce--eEEEcCCCC----EEEEEe-cCcEEE--Eec------------C---Ccce
Confidence 6666666554433222211111 1111 333333322 333333 334444 110 0 0011
Q ss_pred EEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCce--EEEEcccCCCEEEEEECCCCCCCCCCCEE
Q 000450 565 YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL--ITVMHHHVAPVRQIILSPPQTEHPWSDCF 642 (1496)
Q Consensus 565 ~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~--l~~~~~H~~~V~~l~~sPd~~~~~~g~~l 642 (1496)
... -.-.+.+++++|+ +..++.|+.|+.|+++.+..+.+ ......|.++|++++++|| +.+|
T Consensus 439 ~~~-~~y~~s~vAv~~~---------~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd------~~yl 502 (603)
T KOG0318|consen 439 SIP-IGYESSAVAVSPD---------GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPD------GAYL 502 (603)
T ss_pred eec-cccccceEEEcCC---------CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCC------CcEE
Confidence 111 1224679999997 89999999999999999986553 3466789999999999999 9999
Q ss_pred EEEeCCCcEEEEECCCCcEEEE-ecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC-eEEEEEeCCCC
Q 000450 643 LSVGEDFSVALASLETLRVERM-FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTAS 720 (1496)
Q Consensus 643 ~Sgs~DgsV~lWdl~~~~~l~~-~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg-~~~~~l~gh~a 720 (1496)
+++...+.|.+||+.+++.... ..-|.+.|.+++|+|+..++++|+.| -.|.||+++.. +.+.....|..
T Consensus 503 a~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlD--------t~Viiysv~kP~~~i~iknAH~~ 574 (603)
T KOG0318|consen 503 AAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLD--------TNVIIYSVKKPAKHIIIKNAHLG 574 (603)
T ss_pred EEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEecccc--------ceEEEEEccChhhheEecccccc
Confidence 9999999999999998877432 33499999999999999999999999 89999999764 34666677777
Q ss_pred CceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 721 HSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 721 ~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
.+..+.+.+ ...+++..+|..+|.|++
T Consensus 575 gVn~v~wld------------------e~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 575 GVNSVAWLD------------------ESTVVSSGQDANIKVWNV 601 (603)
T ss_pred CceeEEEec------------------CceEEeccCcceeEEecc
Confidence 665555542 123445566999999986
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=243.88 Aligned_cols=200 Identities=20% Similarity=0.277 Sum_probs=173.2
Q ss_pred ccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000450 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1496)
Q Consensus 506 ~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~ 585 (1496)
.+|++.+.+..|+.+. .|++|+.|.++.+ ||+++++....|.||.+.|.+|+++|.
T Consensus 142 ~gHtgylScC~f~dD~-----~ilT~SGD~TCal---------------WDie~g~~~~~f~GH~gDV~slsl~p~---- 197 (343)
T KOG0286|consen 142 AGHTGYLSCCRFLDDN-----HILTGSGDMTCAL---------------WDIETGQQTQVFHGHTGDVMSLSLSPS---- 197 (343)
T ss_pred cCccceeEEEEEcCCC-----ceEecCCCceEEE---------------EEcccceEEEEecCCcccEEEEecCCC----
Confidence 4566667777766655 4999999999988 557788999999999999999999994
Q ss_pred ccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000450 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF 665 (1496)
Q Consensus 586 ~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~ 665 (1496)
+++.++||+.|++.++||++.+.+.++|.+|...|++|.|.|+ |.-|++|+.|+++++||++..+.+..|
T Consensus 198 ----~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~------G~afatGSDD~tcRlyDlRaD~~~a~y 267 (343)
T KOG0286|consen 198 ----DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPS------GDAFATGSDDATCRLYDLRADQELAVY 267 (343)
T ss_pred ----CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccC------CCeeeecCCCceeEEEeecCCcEEeee
Confidence 2899999999999999999999999999999999999999999 999999999999999999999998888
Q ss_pred cCC--CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcC
Q 000450 666 PGH--PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNG 743 (1496)
Q Consensus 666 ~gH--~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g 743 (1496)
... ..+|++|+||-.|++|++|..| .++.|||.-.++.+..|.||..++.++..++ +|
T Consensus 268 s~~~~~~gitSv~FS~SGRlLfagy~d--------~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~------------DG 327 (343)
T KOG0286|consen 268 SHDSIICGITSVAFSKSGRLLFAGYDD--------FTCNVWDTLKGERVGVLAGHENRVSCLGVSP------------DG 327 (343)
T ss_pred ccCcccCCceeEEEcccccEEEeeecC--------CceeEeeccccceEEEeeccCCeeEEEEECC------------CC
Confidence 632 3478999999999999999887 9999999999999999999999998886663 13
Q ss_pred CccccccceeeccCCcEEeec
Q 000450 744 NTSVSSLLLPIHEDGTFRQSQ 764 (1496)
Q Consensus 744 ~~~~s~~l~~~~~D~~ir~W~ 764 (1496)
..+.+++. |.++|+|.
T Consensus 328 ~av~TgSW-----Ds~lriW~ 343 (343)
T KOG0286|consen 328 MAVATGSW-----DSTLRIWA 343 (343)
T ss_pred cEEEecch-----hHheeecC
Confidence 33344444 88999984
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-27 Score=266.85 Aligned_cols=223 Identities=16% Similarity=0.210 Sum_probs=198.0
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGAS 554 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~ 554 (1496)
.+++.+.++++++|+..+.. ..+.+.+|...|..++ |+|+ +|++++.|.+-++
T Consensus 233 ~lat~s~Dgtvklw~~~~e~----~l~~l~gH~~RVs~Va------fHPsG~~L~TasfD~tWRl--------------- 287 (459)
T KOG0272|consen 233 NLATASADGTVKLWKLSQET----PLQDLEGHLARVSRVA------FHPSGKFLGTASFDSTWRL--------------- 287 (459)
T ss_pred ceeeeccCCceeeeccCCCc----chhhhhcchhhheeee------ecCCCceeeecccccchhh---------------
Confidence 47889999999999999864 4667899999999999 6665 8999999998777
Q ss_pred cccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCC
Q 000450 555 LKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634 (1496)
Q Consensus 555 ~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~ 634 (1496)
||..++.......||...|.+++|+|| |.+++|||.|..-+|||+++|.++..+.+|..+|..|.|+|+
T Consensus 288 WD~~tk~ElL~QEGHs~~v~~iaf~~D---------GSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPN-- 356 (459)
T KOG0272|consen 288 WDLETKSELLLQEGHSKGVFSIAFQPD---------GSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPN-- 356 (459)
T ss_pred cccccchhhHhhcccccccceeEecCC---------CceeeccCccchhheeecccCcEEEEecccccceeeEeECCC--
Confidence 456666667777999999999999998 999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcC-CCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~sp-dg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
|..++|||.|++++|||++..+++.++++|.+-|+.|+|+| .|.+|+|++.| ++++||..+++.+++
T Consensus 357 ----Gy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD--------~t~kiWs~~~~~~~k 424 (459)
T KOG0272|consen 357 ----GYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD--------NTVKIWSTRTWSPLK 424 (459)
T ss_pred ----ceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC--------cceeeecCCCcccch
Confidence 99999999999999999999999999999999999999999 77899999998 999999999999999
Q ss_pred EEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeec
Q 000450 714 VLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1496)
Q Consensus 714 ~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~ 764 (1496)
++.||..+++.+... ++ |.... +.+-|.++|.|.
T Consensus 425 sLaGHe~kV~s~Dis----~d--------~~~i~-----t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 425 SLAGHEGKVISLDIS----PD--------SQAIA-----TSSFDRTIKLWR 458 (459)
T ss_pred hhcCCccceEEEEec----cC--------CceEE-----EeccCceeeecc
Confidence 999999999987544 11 33333 333499999995
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-23 Score=238.83 Aligned_cols=405 Identities=15% Similarity=0.167 Sum_probs=263.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEee---ccccceeEeeeccccccccCccccccccccccccc
Q 000450 19 VTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLC---GHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVM 95 (1496)
Q Consensus 19 Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~---GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~ 95 (1496)
|.|+.|+|||...||.+.||+|.++|-.+ + ..+..|. +|.+.|-+|+
T Consensus 193 V~~VRysPDG~~Fat~gsDgki~iyDGkt---g--e~vg~l~~~~aHkGsIfals------------------------- 242 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDGKIYIYDGKT---G--EKVGELEDSDAHKGSIFALS------------------------- 242 (603)
T ss_pred eeeEEECCCCCeEEEecCCccEEEEcCCC---c--cEEEEecCCCCccccEEEEE-------------------------
Confidence 99999999999999999999999999885 3 3455566 8999999999
Q ss_pred ccccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCcccccccccccccc
Q 000450 96 GKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDL 175 (1496)
Q Consensus 96 g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~ 175 (1496)
++||++.++|+|.|.+++|||+.+.+|+....+...++...--+-.+ ...++.+..
T Consensus 243 --WsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd~lItVSl--------------------- 298 (603)
T KOG0318|consen 243 --WSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KDHLITVSL--------------------- 298 (603)
T ss_pred --ECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-CCeEEEEEc---------------------
Confidence 68999999999999999999999999998876652211111111112 344444333
Q ss_pred cccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCcccc
Q 000450 176 VSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDR 255 (1496)
Q Consensus 176 ~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~~ 255 (1496)
++.+-.+++....+++.+.. +... |+++++++ |+ ..++.|+.||.|.-|++..+.
T Consensus 299 -------------~G~in~ln~~d~~~~~~i~G-HnK~--ITaLtv~~---d~--~~i~SgsyDG~I~~W~~~~g~---- 353 (603)
T KOG0318|consen 299 -------------SGTINYLNPSDPSVLKVISG-HNKS--ITALTVSP---DG--KTIYSGSYDGHINSWDSGSGT---- 353 (603)
T ss_pred -------------CcEEEEecccCCChhheecc-cccc--eeEEEEcC---CC--CEEEeeccCceEEEEecCCcc----
Confidence 38899999999887776665 6666 99999984 44 358888999999999998762
Q ss_pred ccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCCcccceeeeecceeEeeCCCCCceeee
Q 000450 256 EEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIG 335 (1496)
Q Consensus 256 ~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~~~l~d~~~~ige~~~~~~~l~~~~~~~~~~~v~ 335 (1496)
..++.+ ..|..-+..++.+..+.++-.+-++.. |..+..+ .
T Consensus 354 --~~~~~g-----------~~h~nqI~~~~~~~~~~~~t~g~Dd~l--~~~~~~~------------------------~ 394 (603)
T KOG0318|consen 354 --SDRLAG-----------KGHTNQIKGMAASESGELFTIGWDDTL--RVISLKD------------------------N 394 (603)
T ss_pred --cccccc-----------ccccceEEEEeecCCCcEEEEecCCeE--EEEeccc------------------------C
Confidence 111111 112222233443332333333333321 1111111 0
Q ss_pred eEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEecCCCCCcccCeeeecCcCCCCCceeeEEEeecceeeeee
Q 000450 336 AMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRM 415 (1496)
Q Consensus 336 g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~~~~~~~ip~~~~~~~~~~~~~f~~~~~~l~~v 415 (1496)
++.. . +.+ ++ ..++.. +++
T Consensus 395 ~~t~-~-----------------~~~------------~l-------g~QP~~------------------------lav 413 (603)
T KOG0318|consen 395 GYTK-S-----------------EVV------------KL-------GSQPKG------------------------LAV 413 (603)
T ss_pred cccc-c-----------------cee------------ec-------CCCcee------------------------EEE
Confidence 0000 0 000 00 000000 000
Q ss_pred eeeeccccccccccCeEEEEEccccCCCCCcceeEeccCCceeeeccccccccCCCCcccceeecccccCccccccccCC
Q 000450 416 ETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDS 495 (1496)
Q Consensus 416 ~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~i~lWd~~~~ 495 (1496)
. .++. +.+.. +.. + -.+.++. .+ + ..
T Consensus 414 ~-----~d~~------~avv~-~~~---~----iv~l~~~---------------~~-----~-----------~~---- 439 (603)
T KOG0318|consen 414 L-----SDGG------TAVVA-CIS---D----IVLLQDQ---------------TK-----V-----------SS---- 439 (603)
T ss_pred c-----CCCC------EEEEE-ecC---c----EEEEecC---------------Cc-----c-----------ee----
Confidence 0 0000 00000 000 0 0111110 00 0 00
Q ss_pred CCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEE
Q 000450 496 RQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLC 575 (1496)
Q Consensus 496 ~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~ 575 (1496)
.+ + .-..+++++.++.. .++.|+.||.+.|+...- ........+..|.++|++
T Consensus 440 ~~-------~---~y~~s~vAv~~~~~----~vaVGG~Dgkvhvysl~g-------------~~l~ee~~~~~h~a~iT~ 492 (603)
T KOG0318|consen 440 IP-------I---GYESSAVAVSPDGS----EVAVGGQDGKVHVYSLSG-------------DELKEEAKLLEHRAAITD 492 (603)
T ss_pred ec-------c---ccccceEEEcCCCC----EEEEecccceEEEEEecC-------------CcccceeeeecccCCceE
Confidence 00 0 11234566555554 899999999999965541 111334456789999999
Q ss_pred EEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceE-EEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEE
Q 000450 576 LAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 654 (1496)
Q Consensus 576 La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l-~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lW 654 (1496)
++|+|| +.+|++|...+.|.+||..+.+.. ..+.-|+..|.+++|+|+ ...+|+||-|..|.+|
T Consensus 493 vaySpd---------~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~------n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 493 VAYSPD---------GAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPN------NKLVATGSLDTNVIIY 557 (603)
T ss_pred EEECCC---------CcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCC------ceEEEeccccceEEEE
Confidence 999998 899999999999999999988764 344559999999999999 7899999999999999
Q ss_pred ECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 655 SLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 655 dl~~~-~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
+++.. +.+.....|...|+.+.|- |...+++.+.| ..|++|.+.
T Consensus 558 sv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~D--------a~iK~W~v~ 602 (603)
T KOG0318|consen 558 SVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQD--------ANIKVWNVT 602 (603)
T ss_pred EccChhhheEeccccccCceeEEEe-cCceEEeccCc--------ceeEEeccc
Confidence 99764 3355556798899999996 56788999988 899999874
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-23 Score=250.21 Aligned_cols=511 Identities=16% Similarity=0.172 Sum_probs=323.1
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCCCce-ee-eEEeeccccceeEeeeccccccccCcccccccccccccccccccCCCCE
Q 000450 27 QPPTLYTGGSDGSILWWSFSDSSYSEI-KP-VAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGA 104 (1496)
Q Consensus 27 Dg~~LaTGs~DG~I~lWdl~~~~~~~~-~~-~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g~~s~d~~~ 104 (1496)
=|..|+++..++.+.+|+... ..+. .. ...+.+.-..|++|. +|. .|.++
T Consensus 123 fGe~lia~d~~~~l~vw~~s~--~~~e~~l~~~~~~~~~~~Ital~--HP~---------TYLNK--------------- 174 (910)
T KOG1539|consen 123 FGEHLIAVDISNILFVWKTSS--IQEELYLQSTFLKVEGDFITALL--HPS---------TYLNK--------------- 174 (910)
T ss_pred ecceEEEEEccCcEEEEEecc--ccccccccceeeeccCCceeeEe--cch---------hheee---------------
Confidence 477888888899999999873 1111 11 111222222288874 565 45555
Q ss_pred EEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEc--CCCCeEEEEcccccccCCcccccccccccccccccccCC
Q 000450 105 LISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTL--PSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDKEV 182 (1496)
Q Consensus 105 LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~--s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~~~~d~~~ 182 (1496)
++-|+.+|.|.+||+.+|+.+...+.. +..|... +|--.++++|.-
T Consensus 175 IvvGs~~G~lql~Nvrt~K~v~~f~~~-----~s~IT~ieqsPaLDVVaiG~~--------------------------- 222 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGKVVYTFQEF-----FSRITAIEQSPALDVVAIGLE--------------------------- 222 (910)
T ss_pred EEEeecCCcEEEEEeccCcEEEEeccc-----ccceeEeccCCcceEEEEecc---------------------------
Confidence 899999999999999999999876543 2444433 455578888875
Q ss_pred CCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCccccccCCCcc
Q 000450 183 PMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLC 262 (1496)
Q Consensus 183 ~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~~~~~~~l~ 262 (1496)
+++|.+++...++++.++.+ .+. .|+.++|. .||. .-+++|+..|.+-+||+++.+.
T Consensus 223 ------~G~ViifNlK~dkil~sFk~-d~g--~VtslSFr---tDG~-p~las~~~~G~m~~wDLe~kkl---------- 279 (910)
T KOG1539|consen 223 ------NGTVIIFNLKFDKILMSFKQ-DWG--RVTSLSFR---TDGN-PLLASGRSNGDMAFWDLEKKKL---------- 279 (910)
T ss_pred ------CceEEEEEcccCcEEEEEEc-ccc--ceeEEEec---cCCC-eeEEeccCCceEEEEEcCCCee----------
Confidence 49999999999999999987 343 49999987 4665 3344448889999999998631
Q ss_pred cCCCccceeeeccCcccCceEEEEecCCcEEEEEeC-CeEEEEEcCCCcccceeeeecceeEeeCCCCCceeeeeEEeec
Q 000450 263 KSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLK-DHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLER 341 (1496)
Q Consensus 263 ~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~-~~~~~~l~d~~~~ige~~~~~~~l~~~~~~~~~~~v~g~~~~~ 341 (1496)
+. ...+.|.+++....|.+..-.+++.+. +...+|.+|+++ |. | .+|.+..+....+..-.++...
T Consensus 280 -----~~--v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d--g~---p-R~LR~R~GHs~Pp~~irfy~~~ 346 (910)
T KOG1539|consen 280 -----IN--VTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD--GV---P-RLLRSRGGHSAPPSCIRFYGSQ 346 (910)
T ss_pred -----ee--eeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCC--Cc---c-hheeeccCCCCCchheeeeccC
Confidence 11 124456777788888888766666554 455778888877 21 2 4444433322211111111100
Q ss_pred hhhhhhcccccccccccceEEEEcCCCcEEEEEEecC--CCCCcccCeeeecCcCCCCCceeeEEEeecceeeeeeeeee
Q 000450 342 VVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYM--NEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVC 419 (1496)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~--~~~~~~~~~~~ip~~~~~~~~~~~~~f~~~~~~l~~v~s~~ 419 (1496)
+ ..+.-...|...+.|.+... +..... -+++......+.
T Consensus 347 g----------------~~ilsa~~Drt~r~fs~~~e~~~~~l~~---~~~~~~~kk~~~-------------------- 387 (910)
T KOG1539|consen 347 G----------------HFILSAKQDRTLRSFSVISESQSQELGQ---LHNKKRAKKVNV-------------------- 387 (910)
T ss_pred c----------------EEEEecccCcchhhhhhhHHHHhHhhcc---cccccccccccc--------------------
Confidence 0 01111112222221211100 000000 000000000000
Q ss_pred ccccccccccCeEEEEEccccCCCCCcceeEeccCCceeeeccccccccCCCCcccceeecccccCccccccccCCCCCC
Q 000450 420 FHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAG 499 (1496)
Q Consensus 420 ~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~i~lWd~~~~~~~~ 499 (1496)
+ .......+|++.+ -..+..+.+|.. .++....+..++.|+..+... |
T Consensus 388 ~-~~~~~k~p~i~~f----------------a~~~~RE~~W~N--------------v~~~h~~~~~~~tW~~~n~~~-G 435 (910)
T KOG1539|consen 388 F-STEKLKLPPIVEF----------------AFENAREKEWDN--------------VITAHKGKRSAYTWNFRNKTS-G 435 (910)
T ss_pred c-chhhhcCCcceee----------------ecccchhhhhcc--------------eeEEecCcceEEEEeccCccc-c
Confidence 0 0011111222221 111222234522 233334445667787766433 2
Q ss_pred Ccc---cccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEE---ecCCccE
Q 000450 500 DGR---DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF---LGHTGAV 573 (1496)
Q Consensus 500 ~~~---~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l---~gH~~~V 573 (1496)
... ..+......++|+++..++. ..+.|++.|.|.+++.+ +|..+..+ ..|.++|
T Consensus 436 ~~~L~~~~~~~~~~~~~av~vs~CGN----F~~IG~S~G~Id~fNmQ---------------SGi~r~sf~~~~ah~~~V 496 (910)
T KOG1539|consen 436 RHVLDPKRFKKDDINATAVCVSFCGN----FVFIGYSKGTIDRFNMQ---------------SGIHRKSFGDSPAHKGEV 496 (910)
T ss_pred cEEecCccccccCcceEEEEEeccCc----eEEEeccCCeEEEEEcc---------------cCeeecccccCccccCce
Confidence 111 11122346788888888877 89999999999995544 55666666 5799999
Q ss_pred EEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEE
Q 000450 574 LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 653 (1496)
Q Consensus 574 ~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~l 653 (1496)
+.|+.... ++.++|++.||.+++||..+..++..++.- .++..+..+.. ...++.+..|-.|++
T Consensus 497 ~gla~D~~---------n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-~~~~~iv~hr~------s~l~a~~~ddf~I~v 560 (910)
T KOG1539|consen 497 TGLAVDGT---------NRLLVSAGADGILKFWDFKKKVLKKSLRLG-SSITGIVYHRV------SDLLAIALDDFSIRV 560 (910)
T ss_pred eEEEecCC---------CceEEEccCcceEEEEecCCcceeeeeccC-CCcceeeeeeh------hhhhhhhcCceeEEE
Confidence 99998765 789999999999999999998888887653 45777777766 679999999999999
Q ss_pred EECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeccccc
Q 000450 654 ASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISM 733 (1496)
Q Consensus 654 Wdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~ 733 (1496)
+|..+.+.++.|.||.+.|++++|||||++|++++.| ++|++||+.||.++..+.-.. ..+.+.|.
T Consensus 561 vD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD--------~tIr~wDlpt~~lID~~~vd~-~~~sls~S----- 626 (910)
T KOG1539|consen 561 VDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMD--------STIRTWDLPTGTLIDGLLVDS-PCTSLSFS----- 626 (910)
T ss_pred EEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecC--------CcEEEEeccCcceeeeEecCC-cceeeEEC-----
Confidence 9999999999999999999999999999999999999 999999999999987765433 33333343
Q ss_pred ccccceEEcCCccccccceeeccC-CcEEeecc
Q 000450 734 NSISGSVLNGNTSVSSLLLPIHED-GTFRQSQI 765 (1496)
Q Consensus 734 ~~~sg~v~~g~~~~s~~l~~~~~D-~~ir~W~l 765 (1496)
.+|+.....+. | .-+..|.=
T Consensus 627 -------PngD~LAT~Hv-----d~~gIylWsN 647 (910)
T KOG1539|consen 627 -------PNGDFLATVHV-----DQNGIYLWSN 647 (910)
T ss_pred -------CCCCEEEEEEe-----cCceEEEEEc
Confidence 23666555444 5 34777853
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=220.34 Aligned_cols=142 Identities=21% Similarity=0.355 Sum_probs=120.2
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.|+.++.|+++++|+.+ +-+....+.||++.|+.++++|| |.++++|+.||.+.+|
T Consensus 164 ~Ivs~s~DktvKvWnl~---------------~~~l~~~~~gh~~~v~t~~vSpD---------GslcasGgkdg~~~Lw 219 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLR---------------NCQLRTTFIGHSGYVNTVTVSPD---------GSLCASGGKDGEAMLW 219 (315)
T ss_pred EEEEccCCceEEEEccC---------------CcchhhccccccccEEEEEECCC---------CCEEecCCCCceEEEE
Confidence 68889999999994333 34566778999999999999998 9999999999999999
Q ss_pred ECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEec----CC-----CCCcEEEEE
Q 000450 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP----GH-----PNYPAKVVW 677 (1496)
Q Consensus 607 Dl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~----gH-----~~~V~~V~~ 677 (1496)
|++.++.+..+ .|...|.+++|+|+ ++.++...+.+|+|||+++++++..+. +. .....+++|
T Consensus 220 dL~~~k~lysl-~a~~~v~sl~fspn-------rywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaw 291 (315)
T KOG0279|consen 220 DLNEGKNLYSL-EAFDIVNSLCFSPN-------RYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAW 291 (315)
T ss_pred EccCCceeEec-cCCCeEeeEEecCC-------ceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEE
Confidence 99999998877 57789999999997 577777788899999999998876653 22 123467899
Q ss_pred cCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 678 DCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 678 spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
++||..|++|-.| +.|++|++..
T Consensus 292 s~dG~tLf~g~td--------~~irv~qv~~ 314 (315)
T KOG0279|consen 292 SADGQTLFAGYTD--------NVIRVWQVAK 314 (315)
T ss_pred cCCCcEEEeeecC--------CcEEEEEeec
Confidence 9999999999988 9999998753
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=234.22 Aligned_cols=151 Identities=21% Similarity=0.312 Sum_probs=133.0
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcc------cCcCCCEEEEEeCC
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK------GWSFNEVLVSGSMD 600 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~------~~~~~~~L~SGs~D 600 (1496)
.+++++.|.++++|. ..++.+...+++|.-+|.|++|.|....++ +...++++.+|+.|
T Consensus 249 i~As~s~dqtl~vW~---------------~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWV---------------VATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred EEEecCCCceEEEEE---------------eccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 466777888888843 445677788999999999999988643222 11235799999999
Q ss_pred CcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCC
Q 000450 601 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP 680 (1496)
Q Consensus 601 gtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spd 680 (1496)
++|++||+.+|.++.++.+|...|..++|+|. |++|+|+.+|+++++||+++++|...++.|...|+++.|+.+
T Consensus 314 ktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~------Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~ 387 (406)
T KOG0295|consen 314 KTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPG------GKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKT 387 (406)
T ss_pred ceEEEEeccCCeEEEEEecccceeeeeEEcCC------CeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCC
Confidence 99999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 681 RGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 681 g~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
-.|+++|+-| .++++|.-
T Consensus 388 ~p~VvTGsVd--------qt~KvwEc 405 (406)
T KOG0295|consen 388 APYVVTGSVD--------QTVKVWEC 405 (406)
T ss_pred CceEEecccc--------ceeeeeec
Confidence 9999999999 99999974
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=232.87 Aligned_cols=161 Identities=24% Similarity=0.300 Sum_probs=145.1
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEE
Q 000450 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1496)
Q Consensus 528 lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWD 607 (1496)
+++.+.||.|.|+..+ ...|+.++.||++.|+++.|.|. +.+|+|+|.|+|++||.
T Consensus 332 F~ts~td~~i~V~kv~---------------~~~P~~t~~GH~g~V~alk~n~t---------g~LLaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVG---------------EDRPVKTFIGHHGEVNALKWNPT---------GSLLASCSDDGTLKIWS 387 (524)
T ss_pred EeecCCCceEEEEEec---------------CCCcceeeecccCceEEEEECCC---------CceEEEecCCCeeEeee
Confidence 5566778888885544 23678899999999999999997 89999999999999999
Q ss_pred CCCCceEEEEcccCCCEEEEEECCCCCC---CCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEE
Q 000450 608 LGSGNLITVMHHHVAPVRQIILSPPQTE---HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYI 684 (1496)
Q Consensus 608 l~tg~~l~~~~~H~~~V~~l~~sPd~~~---~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L 684 (1496)
.....+.+.|.+|...|..+.|+|.+.. ...+..+++++.|++|++||+..+.+++.|..|..+|.+++|+|+|+|+
T Consensus 388 ~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 388 MGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred cCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEE
Confidence 9999999999999999999999998633 3445689999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCC
Q 000450 685 ACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 720 (1496)
Q Consensus 685 ~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a 720 (1496)
++|+.| |.|.+|+++++++.+.+.|-..
T Consensus 468 AsGs~d--------g~V~iws~~~~~l~~s~~~~~~ 495 (524)
T KOG0273|consen 468 ASGSLD--------GCVHIWSTKTGKLVKSYQGTGG 495 (524)
T ss_pred EecCCC--------CeeEeccccchheeEeecCCCe
Confidence 999999 9999999999999999988654
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=232.25 Aligned_cols=169 Identities=17% Similarity=0.267 Sum_probs=142.3
Q ss_pred cccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000450 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1496)
Q Consensus 505 ~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~ 584 (1496)
+.+|.+.|.++.+.+... .|++++.|++++| |. .....+...|.+|+..|..+.|+|+...
T Consensus 355 ~~GH~g~V~alk~n~tg~----LLaS~SdD~Tlki--Ws-------------~~~~~~~~~l~~Hskei~t~~wsp~g~v 415 (524)
T KOG0273|consen 355 FIGHHGEVNALKWNPTGS----LLASCSDDGTLKI--WS-------------MGQSNSVHDLQAHSKEIYTIKWSPTGPV 415 (524)
T ss_pred eecccCceEEEEECCCCc----eEEEecCCCeeEe--ee-------------cCCCcchhhhhhhccceeeEeecCCCCc
Confidence 345677777777444333 8999999999999 33 2334567788999999999999997432
Q ss_pred cccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 000450 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 664 (1496)
Q Consensus 585 ~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~ 664 (1496)
..-+..+..+++++.|++|++||+..|.++++|..|+.+|.+|+|+|+ |.++++|+.||.|.+|+.++++..+.
T Consensus 416 ~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~------g~ylAsGs~dg~V~iws~~~~~l~~s 489 (524)
T KOG0273|consen 416 TSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN------GRYLASGSLDGCVHIWSTKTGKLVKS 489 (524)
T ss_pred cCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC------CcEEEecCCCCeeEeccccchheeEe
Confidence 223345779999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 665 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 665 ~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
+.+. +.|..++|+.+|.+|..+-.| +.+.+-|++
T Consensus 490 ~~~~-~~Ifel~Wn~~G~kl~~~~sd--------~~vcvldlr 523 (524)
T KOG0273|consen 490 YQGT-GGIFELCWNAAGDKLGACASD--------GSVCVLDLR 523 (524)
T ss_pred ecCC-CeEEEEEEcCCCCEEEEEecC--------CCceEEEec
Confidence 8754 459999999999999888887 999998875
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-22 Score=217.69 Aligned_cols=141 Identities=19% Similarity=0.245 Sum_probs=129.2
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.+++|+.|+..++ ||...+.++++|.||...|+++.|+|+ +.-+++||.|++.++|
T Consensus 201 tFvSg~cD~~akl---------------WD~R~~~c~qtF~ghesDINsv~ffP~---------G~afatGSDD~tcRly 256 (343)
T KOG0286|consen 201 TFVSGGCDKSAKL---------------WDVRSGQCVQTFEGHESDINSVRFFPS---------GDAFATGSDDATCRLY 256 (343)
T ss_pred eEEecccccceee---------------eeccCcceeEeecccccccceEEEccC---------CCeeeecCCCceeEEE
Confidence 5788888998888 446677899999999999999999997 8999999999999999
Q ss_pred ECCCCceEEEEccc--CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEE
Q 000450 607 DLGSGNLITVMHHH--VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYI 684 (1496)
Q Consensus 607 Dl~tg~~l~~~~~H--~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L 684 (1496)
|++..+.+..|... ..+|++++|+.. |+++.+|..|.++.+||.-.++.+..+.||.++|.++..+|||.-+
T Consensus 257 DlRaD~~~a~ys~~~~~~gitSv~FS~S------GRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av 330 (343)
T KOG0286|consen 257 DLRADQELAVYSHDSIICGITSVAFSKS------GRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAV 330 (343)
T ss_pred eecCCcEEeeeccCcccCCceeEEEccc------ccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEE
Confidence 99999988888643 358999999998 9999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCEEEEEE
Q 000450 685 ACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 685 ~tgs~D~sg~~D~dg~V~VWD 705 (1496)
++|+.| .+++||.
T Consensus 331 ~TgSWD--------s~lriW~ 343 (343)
T KOG0286|consen 331 ATGSWD--------STLRIWA 343 (343)
T ss_pred Eecchh--------HheeecC
Confidence 999888 9999994
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-24 Score=258.78 Aligned_cols=209 Identities=17% Similarity=0.238 Sum_probs=185.3
Q ss_pred cccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEec
Q 000450 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1496)
Q Consensus 501 ~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~sp 580 (1496)
...++.+|.++|....+.++.. .|+++++|+++++|..+ +..+.-.++||..+|+++.|+|
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~r----fLlScSED~svRLWsl~---------------t~s~~V~y~GH~~PVwdV~F~P 503 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRR----FLLSCSEDSSVRLWSLD---------------TWSCLVIYKGHLAPVWDVQFAP 503 (707)
T ss_pred eeEEeecCCCceeeeeeccccc----ceeeccCCcceeeeecc---------------cceeEEEecCCCcceeeEEecC
Confidence 3455789999999988444444 89999999999995443 4567778899999999999999
Q ss_pred CCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCc
Q 000450 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1496)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~ 660 (1496)
. |.++||||.|++-++|......+++.|.+|-+.|.|+.|+|+ .+++++||.|++||+||+.+|.
T Consensus 504 ~---------GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPN------s~Y~aTGSsD~tVRlWDv~~G~ 568 (707)
T KOG0263|consen 504 R---------GYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPN------SNYVATGSSDRTVRLWDVSTGN 568 (707)
T ss_pred C---------ceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCc------ccccccCCCCceEEEEEcCCCc
Confidence 6 899999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred EEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceE
Q 000450 661 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSV 740 (1496)
Q Consensus 661 ~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v 740 (1496)
+++.|.||.++|.+++|||+|+||++|+.| |.|.+||+.+|+++..+.||++.+..+.|+.
T Consensus 569 ~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed--------~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~----------- 629 (707)
T KOG0263|consen 569 SVRIFTGHKGPVTALAFSPCGRYLASGDED--------GLIKIWDLANGSLVKQLKGHTGTIYSLSFSR----------- 629 (707)
T ss_pred EEEEecCCCCceEEEEEcCCCceEeecccC--------CcEEEEEcCCCcchhhhhcccCceeEEEEec-----------
Confidence 999999999999999999999999999998 9999999999999999999998888888872
Q ss_pred EcCCccccccceeeccCCcEEeeccccc
Q 000450 741 LNGNTSVSSLLLPIHEDGTFRQSQIQND 768 (1496)
Q Consensus 741 ~~g~~~~s~~l~~~~~D~~ir~W~l~~~ 768 (1496)
.|+..++++. |.+++.|++...
T Consensus 630 -dg~vLasgg~-----DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 630 -DGNVLASGGA-----DNSVRLWDLTKV 651 (707)
T ss_pred -CCCEEEecCC-----CCeEEEEEchhh
Confidence 2444344444 999999997443
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-24 Score=235.71 Aligned_cols=145 Identities=24% Similarity=0.350 Sum_probs=125.0
Q ss_pred ccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCc
Q 000450 523 YAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS 602 (1496)
Q Consensus 523 f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~Dgt 602 (1496)
|...++|+++.|.+|++ |+..+.++++++.||+..|.|+.|. +++++|||.|.+
T Consensus 328 fd~kyIVsASgDRTikv---------------W~~st~efvRtl~gHkRGIAClQYr-----------~rlvVSGSSDnt 381 (499)
T KOG0281|consen 328 FDDKYIVSASGDRTIKV---------------WSTSTCEFVRTLNGHKRGIACLQYR-----------DRLVVSGSSDNT 381 (499)
T ss_pred cccceEEEecCCceEEE---------------Eeccceeeehhhhcccccceehhcc-----------CeEEEecCCCce
Confidence 33337889999999999 3456788999999999999999874 799999999999
Q ss_pred EEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCc---------EEEEecCCCCCcE
Q 000450 603 IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR---------VERMFPGHPNYPA 673 (1496)
Q Consensus 603 V~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~---------~l~~~~gH~~~V~ 673 (1496)
|++||+..|.+++.+.+|..-|.++.|.- +.++||+.||+|++||+..+. |+..+..|.+.|.
T Consensus 382 IRlwdi~~G~cLRvLeGHEeLvRciRFd~--------krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVF 453 (499)
T KOG0281|consen 382 IRLWDIECGACLRVLEGHEELVRCIRFDN--------KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVF 453 (499)
T ss_pred EEEEeccccHHHHHHhchHHhhhheeecC--------ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeE
Confidence 99999999999999999999999999964 489999999999999998653 5666778999999
Q ss_pred EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 674 ~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
.+.| |...+++.+.| .+|-|||...+..
T Consensus 454 rLQF--D~fqIvsssHd--------dtILiWdFl~~~~ 481 (499)
T KOG0281|consen 454 RLQF--DEFQIISSSHD--------DTILIWDFLNGPP 481 (499)
T ss_pred EEee--cceEEEeccCC--------CeEEEEEcCCCCc
Confidence 9999 45677777777 8999999977654
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-22 Score=212.25 Aligned_cols=161 Identities=17% Similarity=0.320 Sum_probs=135.8
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEE-ecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l-~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~l 605 (1496)
.|++|..+|.|+| ||+-. ..+...+ ..-.-.|.++...|| +..|+.+..-|+..+
T Consensus 138 eLis~dqsg~irv--WDl~~-------------~~c~~~liPe~~~~i~sl~v~~d---------gsml~a~nnkG~cyv 193 (311)
T KOG0315|consen 138 ELISGDQSGNIRV--WDLGE-------------NSCTHELIPEDDTSIQSLTVMPD---------GSMLAAANNKGNCYV 193 (311)
T ss_pred eEEeecCCCcEEE--EEccC-------------CccccccCCCCCcceeeEEEcCC---------CcEEEEecCCccEEE
Confidence 5777777888888 44211 1111111 223356889999997 899999999999999
Q ss_pred EECCCC------ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEEc
Q 000450 606 WDLGSG------NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWD 678 (1496)
Q Consensus 606 WDl~tg------~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~-~~l~~~~gH~~~V~~V~~s 678 (1496)
|++-+. +++++|+.|.+.+.++.++|+ +++|+++|.|++++||+.++. +....+.+|...++.++||
T Consensus 194 W~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd------~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 194 WRLLNHQTASELEPVHKFQAHNGHILRCLLSPD------VKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFS 267 (311)
T ss_pred EEccCCCccccceEhhheecccceEEEEEECCC------CcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeec
Confidence 999764 367889999999999999999 899999999999999999988 7778889999999999999
Q ss_pred CCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceee
Q 000450 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFD 725 (1496)
Q Consensus 679 pdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~ 725 (1496)
.|+.||++|+.| +.+++||+..++.++.+.||....++.
T Consensus 268 ~dg~YlvTassd--------~~~rlW~~~~~k~v~qy~gh~K~~vc~ 306 (311)
T KOG0315|consen 268 ADGEYLVTASSD--------HTARLWDLSAGKEVRQYQGHHKAAVCV 306 (311)
T ss_pred cCccEEEecCCC--------CceeecccccCceeeecCCcccccEEE
Confidence 999999999998 999999999999999999999776654
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-21 Score=228.08 Aligned_cols=521 Identities=14% Similarity=0.149 Sum_probs=311.4
Q ss_pred CCceEEEEEEcCCCC---EEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCccccccccccc
Q 000450 15 PSHRVTATSALTQPP---TLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENS 91 (1496)
Q Consensus 15 psh~Vtava~SpDg~---~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~ 91 (1496)
+..+|+|+.+.|+.+ .+++|+.||+|++|.+.. .....+..+.||...+.|+.-
T Consensus 53 H~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~---~~~~~i~~~~g~~~~~~cv~a-------------------- 109 (764)
T KOG1063|consen 53 HVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRD---EYLIKIYTIQGHCKECVCVVA-------------------- 109 (764)
T ss_pred CccceEEEEEcccccccceEEEccCCCcEEEEEEee---hheEEEEeecCcceeEEEEEe--------------------
Confidence 456799999999877 899999999999999983 334556677888888888861
Q ss_pred ccccccccCCCCEEEE-EeCCCeEEEEECCCCe--EEEeecCCCCCCCCcEEEEcC-CCCeEEEEcccccccCCcccccc
Q 000450 92 SNVMGKSSLDNGALIS-ACTDGVLCVWSRSSGH--CRRRRKLPPWVGSPSVICTLP-SNPRYVCIGCCFIDTNQLSDHHS 167 (1496)
Q Consensus 92 ~~~~g~~s~d~~~LaS-as~DG~l~VWdv~~G~--ci~~~~l~~~~g~~~~i~~~s-~~~~ll~~G~~~id~~~l~~~~~ 167 (1496)
...+.+ .+.|+++.+||.+..+ |.+.....-..-.|....+.+ ++.-++++|..
T Consensus 110 ----------~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs------------ 167 (764)
T KOG1063|consen 110 ----------RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGS------------ 167 (764)
T ss_pred ----------eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCc------------
Confidence 111222 3799999999996555 333221110112234444555 33456778765
Q ss_pred cccccccccccccCCCCCCCCccEEEEEECCce--EEEEEEecCccccCCeEEEEEeeccCCCCceeEEEE--eCCCcEE
Q 000450 168 FESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGL--TIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMV--DSVGRLQ 243 (1496)
Q Consensus 168 ~~~v~~~~~~~d~~~~~~~~~~~~I~v~D~~t~--~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llva--s~dG~V~ 243 (1496)
++.|.++--.+. +.+..+.. +.|||..++|.- +.+ ++++++ +.|..||
T Consensus 168 ---------------------~~~v~~~s~~~d~f~~v~el~G---H~DWIrsl~f~~--~~~--~~~~laS~SQD~yIR 219 (764)
T KOG1063|consen 168 ---------------------KFVVDLYSSSADSFARVAELEG---HTDWIRSLAFAR--LGG--DDLLLASSSQDRYIR 219 (764)
T ss_pred ---------------------ceEEEEeccCCcceeEEEEeec---cchhhhhhhhhc--cCC--CcEEEEecCCceEEE
Confidence 233444333322 23344443 579999999873 222 234444 9999999
Q ss_pred EEECCCCCccc---cccCCCcccCC--Ccc-cee-------eeccCcccCceEEEEecCCcEEEEEeCC-eEEEEEcCCC
Q 000450 244 LVPISKESHLD---REEGNGLCKSS--SQL-DMA-------ILQNGVVEGGHLVSVATCGNIIALVLKD-HCIFRLLGSG 309 (1496)
Q Consensus 244 lWdl~~~~~~~---~~~~~~l~~~e--k~i-~~v-------~~~~~~~~~~~~va~s~dg~~l~t~~~~-~~~~~l~d~~ 309 (1496)
||.+......+ .+....++.+. ..+ +.+ ....+|..-+..+-..|.+..|++.+.| ..++ |..+
T Consensus 220 iW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmii--W~pd 297 (764)
T KOG1063|consen 220 IWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMII--WKPD 297 (764)
T ss_pred EEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEE--EecC
Confidence 99987542111 00000111111 000 000 1133577778899999999777766555 4566 5544
Q ss_pred cccceeeeecceeEee-CCCCCceeeeeEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEecCCCCCcccCee
Q 000450 310 STIGEICFVDNLFCLE-GGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHF 388 (1496)
Q Consensus 310 ~~ige~~~~~~~l~~~-~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~~~~~~ 388 (1496)
+.-| .+. ..+++. .+.....+-++.+.... ..++-|+..|+.++|+- .....|
T Consensus 298 ~~tG--iWv-~~vRlGe~gg~a~GF~g~lw~~n~----------------~~ii~~g~~Gg~hlWkt-------~d~~~w 351 (764)
T KOG1063|consen 298 ENTG--IWV-DVVRLGEVGGSAGGFWGGLWSPNS----------------NVIIAHGRTGGFHLWKT-------KDKTFW 351 (764)
T ss_pred Cccc--eEE-EEEEeecccccccceeeEEEcCCC----------------CEEEEecccCcEEEEec-------cCccce
Confidence 4111 111 122221 11111124455554321 25666777888888871 111234
Q ss_pred -eecCcCCCCCceeeEEEeecceeeeeeeeeeccccccccccCeEEEEEccccCCCCCcceeEeccCCceeeeccccccc
Q 000450 389 -EIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFL 467 (1496)
Q Consensus 389 -~ip~~~~~~~~~~~~~f~~~~~~l~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~ 467 (1496)
..|..++.-++.-.+.+.+.+.|++++.. +.++++++ ..+....
T Consensus 352 ~~~~~iSGH~~~V~dv~W~psGeflLsvs~-----------DQTTRlFa----------------~wg~q~~-------- 396 (764)
T KOG1063|consen 352 TQEPVISGHVDGVKDVDWDPSGEFLLSVSL-----------DQTTRLFA----------------RWGRQQE-------- 396 (764)
T ss_pred eeccccccccccceeeeecCCCCEEEEecc-----------ccceeeec----------------ccccccc--------
Confidence 22333333344556777777888877653 23344432 1110000
Q ss_pred cCCCCcccceeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecc---
Q 000450 468 DENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL--- 544 (1496)
Q Consensus 468 ~~~dG~~i~~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~--- 544 (1496)
|.-. ...+-|+-.++|++++.... ++++|.+..-++++....
T Consensus 397 ----------------------wHEi---------aRPQiHGyDl~c~~~vn~~~----~FVSgAdEKVlRvF~aPk~fv 441 (764)
T KOG1063|consen 397 ----------------------WHEI---------ARPQIHGYDLTCLSFVNEDL----QFVSGADEKVLRVFEAPKSFV 441 (764)
T ss_pred ----------------------eeee---------cccccccccceeeehccCCc----eeeecccceeeeeecCcHHHH
Confidence 1111 11244556666666555322 566666666566643210
Q ss_pred -----ccc--------------------------------C-C-----------CCCCc--cccC-------CcceEEEE
Q 000450 545 -----FER--------------------------------H-N-----------SPGAS--LKVN-------SHVSRQYF 566 (1496)
Q Consensus 545 -----l~~--------------------------------~-d-----------~~~~~--~d~~-------s~~~~~~l 566 (1496)
+.+ + . .+..+ +..+ .-..++.+
T Consensus 442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL 521 (764)
T KOG1063|consen 442 KSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL 521 (764)
T ss_pred HHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh
Confidence 000 0 0 00000 0000 00123457
Q ss_pred ecCCccEEEEEEecCCCCcccCcCCCEEEEEeCC-----CcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCE
Q 000450 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD-----CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1496)
Q Consensus 567 ~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~D-----gtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~ 641 (1496)
+||...|.|++.+|+ +++++|+... ..|++|+..+......+.+|.-.|+.++|+|| +++
T Consensus 522 YGHGyEv~~l~~s~~---------gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpd------g~~ 586 (764)
T KOG1063|consen 522 YGHGYEVYALAISPT---------GNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPD------GRY 586 (764)
T ss_pred ccCceeEEEEEecCC---------CCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCC------CcE
Confidence 899999999999997 8999998754 35899999999888899999999999999999 999
Q ss_pred EEEEeCCCcEEEEECCCCc-EE---EEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC--eEEE--
Q 000450 642 FLSVGEDFSVALASLETLR-VE---RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG--ARER-- 713 (1496)
Q Consensus 642 l~Sgs~DgsV~lWdl~~~~-~l---~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg--~~~~-- 713 (1496)
|+++|.|+++.+|...+.. .. .....|..-|+++.|+|++.+++|+++| .+|+||..... +.+.
T Consensus 587 LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRD--------K~VkVW~~~~~~d~~i~~~ 658 (764)
T KOG1063|consen 587 LLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRD--------KKVKVWEEPDLRDKYISRF 658 (764)
T ss_pred EEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCC--------ceEEEEeccCchhhhhhhh
Confidence 9999999999999875432 11 2256799999999999999999999999 99999998776 3222
Q ss_pred EEeCCCCCceeeeeec
Q 000450 714 VLRGTASHSMFDHFCK 729 (1496)
Q Consensus 714 ~l~gh~a~vi~~~~~~ 729 (1496)
....+...++...+++
T Consensus 659 a~~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 659 ACLKFSLAVTAVAYLP 674 (764)
T ss_pred chhccCCceeeEEeec
Confidence 2334566666666664
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-23 Score=249.21 Aligned_cols=223 Identities=22% Similarity=0.317 Sum_probs=188.7
Q ss_pred cccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecc-----cccCC-----------CCCCccccCCcceEE
Q 000450 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL-----FERHN-----------SPGASLKVNSHVSRQ 564 (1496)
Q Consensus 501 ~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~-----l~~~d-----------~~~~~~d~~s~~~~~ 564 (1496)
+..++..-...++|..+.++.. .+|+|+.|..|++|.+.. +...+ ......|..+....+
T Consensus 370 c~YT~~nt~~~v~ca~fSddss----mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSS----MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcc----hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence 3344444456788888666666 999999999999987651 11110 011223334445567
Q ss_pred EEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEE
Q 000450 565 YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLS 644 (1496)
Q Consensus 565 ~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~S 644 (1496)
++.||+++|....|+|+ .++|+|+|.|++||+|.+.+..++..+++|..||+.+.|+|. |.+|||
T Consensus 446 ~L~GH~GPVyg~sFsPd---------~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~------GyYFat 510 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPD---------RRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR------GYYFAT 510 (707)
T ss_pred EeecCCCceeeeeeccc---------ccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC------ceEEEe
Confidence 79999999999999998 899999999999999999999999999999999999999998 999999
Q ss_pred EeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCcee
Q 000450 645 VGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMF 724 (1496)
Q Consensus 645 gs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~ 724 (1496)
+|.|++.++|.....++++.|.||-+.|.|+.|+|+..|+++|+.| .+||+||+.+|..+|.+.||.+.++.
T Consensus 511 as~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD--------~tVRlWDv~~G~~VRiF~GH~~~V~a 582 (707)
T KOG0263|consen 511 ASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSD--------RTVRLWDVSTGNSVRIFTGHKGPVTA 582 (707)
T ss_pred cCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCC--------ceEEEEEcCCCcEEEEecCCCCceEE
Confidence 9999999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred eeeecccccccccceEEcCCccccccceeeccCCcEEeecccc
Q 000450 725 DHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1496)
Q Consensus 725 ~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~ 767 (1496)
+.|++ +|.+.+++.- |+.|++|++.+
T Consensus 583 l~~Sp------------~Gr~LaSg~e-----d~~I~iWDl~~ 608 (707)
T KOG0263|consen 583 LAFSP------------CGRYLASGDE-----DGLIKIWDLAN 608 (707)
T ss_pred EEEcC------------CCceEeeccc-----CCcEEEEEcCC
Confidence 98882 2555555544 99999999854
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-22 Score=214.94 Aligned_cols=277 Identities=17% Similarity=0.163 Sum_probs=206.7
Q ss_pred eecccccCccccccccC-CCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 478 SDLTFCQDTVPRSEHVD-SRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~-~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
+...+.+..+-+|++.. ....|.....+.+|...|+.+.+.++.. +.++|+.||.+++ ||
T Consensus 31 l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~----~alS~swD~~lrl---------------WD 91 (315)
T KOG0279|consen 31 LVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN----FALSASWDGTLRL---------------WD 91 (315)
T ss_pred EEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc----eEEeccccceEEE---------------EE
Confidence 33445555666676543 3344566777899999999999888887 8999999999999 34
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEccc--CCCEEEEEECCCCC
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH--VAPVRQIILSPPQT 634 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H--~~~V~~l~~sPd~~ 634 (1496)
..++++.+.|.||+..|.+++|++| ++.++|||.|.+|++||+. |.+..++..+ .+.|.++.|+|..
T Consensus 92 l~~g~~t~~f~GH~~dVlsva~s~d---------n~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~- 160 (315)
T KOG0279|consen 92 LATGESTRRFVGHTKDVLSVAFSTD---------NRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNE- 160 (315)
T ss_pred ecCCcEEEEEEecCCceEEEEecCC---------CceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCC-
Confidence 5677889999999999999999998 7999999999999999986 5666666554 6889999999983
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
...+|+++|.|++|++||+++.+...++.||...++.+.+||||...++|+.| |.+.+||+..++.+..
T Consensus 161 ---~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkd--------g~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 161 ---SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKD--------GEAMLWDLNEGKNLYS 229 (315)
T ss_pred ---CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCC--------ceEEEEEccCCceeEe
Confidence 24599999999999999999999999999999999999999999999999998 9999999999999777
Q ss_pred EeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecccccccccccccCCCCCccccccCCCCCCC
Q 000450 715 LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASHVRKGNSGKPS 794 (1496)
Q Consensus 715 l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~~~~~~~~~~p~~~~~~~~~~~~~~ 794 (1496)
+. |...+-...|.| ....+....+..||+|++....- ++.-+.+..
T Consensus 230 l~-a~~~v~sl~fsp------------------nrywL~~at~~sIkIwdl~~~~~--------------v~~l~~d~~- 275 (315)
T KOG0279|consen 230 LE-AFDIVNSLCFSP------------------NRYWLCAATATSIKIWDLESKAV--------------VEELKLDGI- 275 (315)
T ss_pred cc-CCCeEeeEEecC------------------CceeEeeccCCceEEEeccchhh--------------hhhcccccc-
Confidence 64 443444443432 22334445577799999732111 110010000
Q ss_pred CCCccccccccccccccCCCCcceEEEechhhhcccc
Q 000450 795 LNTRIGLQRKKQTIKCSCPYPGIATLSFDLASLMFPY 831 (1496)
Q Consensus 795 ~~~p~~~~~~~~~~~~~~~~~~~~~l~fd~e~l~~~~ 831 (1496)
.|........-+-+.|+..|.+.+.-+-.+.|+..
T Consensus 276 --g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 276 --GPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred --ccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 00000001112345688899999988887776543
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-21 Score=210.86 Aligned_cols=140 Identities=20% Similarity=0.326 Sum_probs=119.8
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEE
Q 000450 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1496)
Q Consensus 528 lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWD 607 (1496)
+++|.-|+.|++ |+ ........++.||.+.|+.+..+|+ +..+.|-++|.++++||
T Consensus 189 v~sggIdn~ikv--Wd-------------~r~~d~~~~lsGh~DtIt~lsls~~---------gs~llsnsMd~tvrvwd 244 (338)
T KOG0265|consen 189 VISGGIDNDIKV--WD-------------LRKNDGLYTLSGHADTITGLSLSRY---------GSFLLSNSMDNTVRVWD 244 (338)
T ss_pred eeeccccCceee--ec-------------cccCcceEEeecccCceeeEEeccC---------CCccccccccceEEEEE
Confidence 556677888888 44 3334667889999999999999997 89999999999999999
Q ss_pred CCCC----ceEEEEcccCC----CEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcC
Q 000450 608 LGSG----NLITVMHHHVA----PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC 679 (1496)
Q Consensus 608 l~tg----~~l~~~~~H~~----~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~sp 679 (1496)
++.. .++..|.+|.- -...+.|+|+ +..+..|+.|+.+.+||....+.+..++||.+.|.++.|+|
T Consensus 245 ~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~------~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp 318 (338)
T KOG0265|consen 245 VRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN------GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP 318 (338)
T ss_pred ecccCCCCceEEEeecchhhhhhhcceeeccCC------CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC
Confidence 9843 45788877643 2456789998 88999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000450 680 PRGYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 680 dg~~L~tgs~D~sg~~D~dg~V~VWD 705 (1496)
...+|.+++.| .+|++=+
T Consensus 319 ~e~iils~~sd--------k~i~lge 336 (338)
T KOG0265|consen 319 TEPIILSCSSD--------KTIYLGE 336 (338)
T ss_pred CCcEEEEeccC--------ceeEeec
Confidence 99999999998 8998743
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-23 Score=231.64 Aligned_cols=221 Identities=24% Similarity=0.262 Sum_probs=189.7
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
++.....+.++++||...- .+...+.||.+.|.|+. |....+++|++|.+|+||+
T Consensus 209 kiVSGlrDnTikiWD~n~~----~c~~~L~GHtGSVLCLq------yd~rviisGSSDsTvrvWD--------------- 263 (499)
T KOG0281|consen 209 KIVSGLRDNTIKIWDKNSL----ECLKILTGHTGSVLCLQ------YDERVIVSGSSDSTVRVWD--------------- 263 (499)
T ss_pred hhhcccccCceEEeccccH----HHHHhhhcCCCcEEeee------ccceEEEecCCCceEEEEe---------------
Confidence 5677788999999997653 56677899999999987 5555899999999999944
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc---eEEEEcccCCCEEEEEECCCC
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---LITVMHHHVAPVRQIILSPPQ 633 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~---~l~~~~~H~~~V~~l~~sPd~ 633 (1496)
+++++++.++.+|...|..+.|+ +.+++++|.|.++.+||+.+.. +.+.+.+|...|+.+.|+
T Consensus 264 v~tge~l~tlihHceaVLhlrf~-----------ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--- 329 (499)
T KOG0281|consen 264 VNTGEPLNTLIHHCEAVLHLRFS-----------NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--- 329 (499)
T ss_pred ccCCchhhHHhhhcceeEEEEEe-----------CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---
Confidence 44788999999999999999997 5789999999999999998765 447788999999999996
Q ss_pred CCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 634 TEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 634 ~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
.++++|++.|.+|++|++.++++++++.||...|.|+.+. |+++++|+.| .+|++||++.|.++|
T Consensus 330 -----~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSD--------ntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 330 -----DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSD--------NTIRLWDIECGACLR 394 (499)
T ss_pred -----cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCC--------ceEEEEeccccHHHH
Confidence 4599999999999999999999999999999999888874 7899998888 999999999999999
Q ss_pred EEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccccccc
Q 000450 714 VLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER 770 (1496)
Q Consensus 714 ~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~ 770 (1496)
++.||..-+-++.|.++ -.+++.. ||++|+|+++..++
T Consensus 395 vLeGHEeLvRciRFd~k--------------rIVSGaY-----DGkikvWdl~aald 432 (499)
T KOG0281|consen 395 VLEGHEELVRCIRFDNK--------------RIVSGAY-----DGKIKVWDLQAALD 432 (499)
T ss_pred HHhchHHhhhheeecCc--------------eeeeccc-----cceEEEEecccccC
Confidence 99999998888888732 1122233 99999999976554
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-20 Score=209.05 Aligned_cols=141 Identities=26% Similarity=0.401 Sum_probs=123.8
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.+++++.||.+.+ |+ ..+++....+..|...|.++.|+|+ ++.+++++.|+.|++|
T Consensus 149 ~l~~~~~~~~i~i--~d-------------~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~l~~~~~~~~i~i~ 204 (289)
T cd00200 149 FVASSSQDGTIKL--WD-------------LRTGKCVATLTGHTGEVNSVAFSPD---------GEKLLSSSSDGTIKLW 204 (289)
T ss_pred EEEEEcCCCcEEE--EE-------------ccccccceeEecCccccceEEECCC---------cCEEEEecCCCcEEEE
Confidence 3555556888888 33 2234556677789999999999997 7788888889999999
Q ss_pred ECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEE
Q 000450 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIAC 686 (1496)
Q Consensus 607 Dl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~t 686 (1496)
|+.+++.+..+..|..+|.++.|+|+ +..+++++.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++
T Consensus 205 d~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 205 DLSTGKCLGTLRGHENGVNSVAFSPD------GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred ECCCCceecchhhcCCceEEEEEcCC------CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEE
Confidence 99999999999899999999999998 788999888999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCEEEEEE
Q 000450 687 LCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 687 gs~D~sg~~D~dg~V~VWD 705 (1496)
++.| +.|++||
T Consensus 279 ~~~d--------~~i~iw~ 289 (289)
T cd00200 279 GSAD--------GTIRIWD 289 (289)
T ss_pred ecCC--------CeEEecC
Confidence 9998 9999996
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-22 Score=233.33 Aligned_cols=231 Identities=20% Similarity=0.245 Sum_probs=193.2
Q ss_pred ecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccC
Q 000450 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1496)
Q Consensus 479 ~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~ 558 (1496)
.++..+|.+.+|+..+- .+...+.-...+|++..++.-.. .+++|+.|+.|+|++++
T Consensus 29 la~LynG~V~IWnyetq----tmVksfeV~~~PvRa~kfiaRkn----Wiv~GsDD~~IrVfnyn--------------- 85 (794)
T KOG0276|consen 29 LAALYNGDVQIWNYETQ----TMVKSFEVSEVPVRAAKFIARKN----WIVTGSDDMQIRVFNYN--------------- 85 (794)
T ss_pred EEeeecCeeEEEecccc----eeeeeeeecccchhhheeeeccc----eEEEecCCceEEEEecc---------------
Confidence 34556788999998763 34455555566777776555444 89999999999997766
Q ss_pred CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCC-CceEEEEcccCCCEEEEEECCCCCCCC
Q 000450 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-GNLITVMHHHVAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 559 s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~t-g~~l~~~~~H~~~V~~l~~sPd~~~~~ 637 (1496)
+++.+..|..|.+.|.|++.||. ..+++|+|+|-+|++||-+. ..+.++|.+|...|.+++|+|..
T Consensus 86 t~ekV~~FeAH~DyIR~iavHPt---------~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD---- 152 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHPT---------LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKD---- 152 (794)
T ss_pred cceeeEEeeccccceeeeeecCC---------CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCC----
Confidence 45678899999999999999997 78999999999999999875 46789999999999999999984
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcC--CCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC--PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~sp--dg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
.+.|+|+|-|++|++|++....+..++.||...|++|.+-+ |..||++|+.| .+|+|||..|.+|++++
T Consensus 153 -~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD--------~tiKvWDyQtk~CV~TL 223 (794)
T KOG0276|consen 153 -PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD--------LTIKVWDYQTKSCVQTL 223 (794)
T ss_pred -ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC--------ceEEEeecchHHHHHHh
Confidence 78999999999999999999999999999999999999976 44699999988 99999999999999999
Q ss_pred eCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecccccccc
Q 000450 716 RGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERG 771 (1496)
Q Consensus 716 ~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~~ 771 (1496)
.||+..+-.+.|.+++. ++++| ++||++|+||...+...
T Consensus 224 eGHt~Nvs~v~fhp~lp------iiisg-----------sEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 224 EGHTNNVSFVFFHPELP------IIISG-----------SEDGTVRIWNSKTYKLE 262 (794)
T ss_pred hcccccceEEEecCCCc------EEEEe-----------cCCccEEEecCcceehh
Confidence 99998888877776533 22333 45999999997665543
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-20 Score=207.89 Aligned_cols=159 Identities=17% Similarity=0.134 Sum_probs=127.4
Q ss_pred CCCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCccccccccccccc
Q 000450 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1496)
Q Consensus 14 ~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~ 93 (1496)
.++..|-+++.+|+-+++|||+.|..-.||++.+ ++ ....+.||..+|+|+.
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~---ge--~~~eltgHKDSVt~~~----------------------- 113 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIST---GE--FAGELTGHKDSVTCCS----------------------- 113 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccC---Cc--ceeEecCCCCceEEEE-----------------------
Confidence 4667899999999999999999999999999985 43 5677899999999998
Q ss_pred ccccccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEE--EcCCCCeEEEEcccccccCCcccccccccc
Q 000450 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVIC--TLPSNPRYVCIGCCFIDTNQLSDHHSFESV 171 (1496)
Q Consensus 94 ~~g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~--~~s~~~~ll~~G~~~id~~~l~~~~~~~~v 171 (1496)
|+.|+.|||||.-+|.|+||.+.+|.......-+ ...|. ..+|.++.+..|+.
T Consensus 114 ----FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e-----~~dieWl~WHp~a~illAG~~---------------- 168 (399)
T KOG0296|consen 114 ----FSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE-----VEDIEWLKWHPRAHILLAGST---------------- 168 (399)
T ss_pred ----EccCceEEEecCCCccEEEEEcccCceEEEeecc-----cCceEEEEecccccEEEeecC----------------
Confidence 6899999999999999999999999866543212 22333 55578888888876
Q ss_pred cccccccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCC
Q 000450 172 EGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKE 250 (1496)
Q Consensus 172 ~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~ 250 (1496)
++.+++|...+....+.+.. +.++ +++-.|. |||++ ++.+..||+|++|++.+.
T Consensus 169 -----------------DGsvWmw~ip~~~~~kv~~G-h~~~--ct~G~f~---pdGKr--~~tgy~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 169 -----------------DGSVWMWQIPSQALCKVMSG-HNSP--CTCGEFI---PDGKR--ILTGYDDGTIIVWNPKTG 222 (399)
T ss_pred -----------------CCcEEEEECCCcceeeEecC-CCCC--ccccccc---CCCce--EEEEecCceEEEEecCCC
Confidence 38999999988755555544 5555 7777888 56664 777788999999998665
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-21 Score=217.67 Aligned_cols=226 Identities=15% Similarity=0.137 Sum_probs=195.2
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecc-------------
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL------------- 544 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~------------- 544 (1496)
++..+.+.++++||..+. ++...+++|...|..+++..... .+++++.|=.+.+|.++.
T Consensus 123 v~~as~d~tikv~D~~tg----~~e~~LrGHt~sv~di~~~a~Gk----~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h 194 (406)
T KOG0295|consen 123 VVSASEDATIKVFDTETG----ELERSLRGHTDSVFDISFDASGK----YLATCSSDLSAKLWDFDTFFRCIKSLIGHEH 194 (406)
T ss_pred EEEecCCceEEEEEccch----hhhhhhhccccceeEEEEecCcc----EEEecCCccchhheeHHHHHHHHHHhcCccc
Confidence 345557889999999884 66778899999999998776665 899999998888865432
Q ss_pred -------------cccC--CCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECC
Q 000450 545 -------------FERH--NSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG 609 (1496)
Q Consensus 545 -------------l~~~--d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~ 609 (1496)
+... |...+.|+..++-++.++.+|...|..++.+.| +.+++|++.|.+|++|-+.
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~D---------Gti~As~s~dqtl~vW~~~ 265 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQD---------GTIIASCSNDQTLRVWVVA 265 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCC---------eeEEEecCCCceEEEEEec
Confidence 0111 345678999999999999999999999999887 8999999999999999999
Q ss_pred CCceEEEEcccCCCEEEEEECCCCCCC------C---CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCC
Q 000450 610 SGNLITVMHHHVAPVRQIILSPPQTEH------P---WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP 680 (1496)
Q Consensus 610 tg~~l~~~~~H~~~V~~l~~sPd~~~~------~---~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spd 680 (1496)
++++...++.|.-+|.+++|.|+.... + -++++.+++.|++|++||+.+++|+.++.||.+.|..++|+|.
T Consensus 266 t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~ 345 (406)
T KOG0295|consen 266 TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPG 345 (406)
T ss_pred cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCC
Confidence 999999999999999999999874321 1 2469999999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000450 681 RGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1496)
Q Consensus 681 g~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~ 728 (1496)
|+||+++..| ++++|||++++++..++..|..-+..+.|.
T Consensus 346 Gkyi~ScaDD--------ktlrvwdl~~~~cmk~~~ah~hfvt~lDfh 385 (406)
T KOG0295|consen 346 GKYILSCADD--------KTLRVWDLKNLQCMKTLEAHEHFVTSLDFH 385 (406)
T ss_pred CeEEEEEecC--------CcEEEEEeccceeeeccCCCcceeEEEecC
Confidence 9999998888 999999999999999999999766666555
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-19 Score=237.31 Aligned_cols=141 Identities=14% Similarity=0.197 Sum_probs=117.6
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCc-ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH-VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~-~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~l 605 (1496)
.+++|+.||.|++|+.. +. .+...+.+|...|+++.|.+ +..|++|+.|++|++
T Consensus 632 ~latgs~dg~I~iwD~~---------------~~~~~~~~~~~h~~~V~~v~f~~----------~~~lvs~s~D~~iki 686 (793)
T PLN00181 632 SLAFGSADHKVYYYDLR---------------NPKLPLCTMIGHSKTVSYVRFVD----------SSTLVSSSTDNTLKL 686 (793)
T ss_pred EEEEEeCCCeEEEEECC---------------CCCccceEecCCCCCEEEEEEeC----------CCEEEEEECCCEEEE
Confidence 57888999999994332 11 24567789999999999973 688999999999999
Q ss_pred EECCC------CceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe-------------c
Q 000450 606 WDLGS------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF-------------P 666 (1496)
Q Consensus 606 WDl~t------g~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~-------------~ 666 (1496)
||+.. +.+++.+.+|...+..+.|+|+ +.+|++|+.|+.|++|+......+..+ .
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~------~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~ 760 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVS------DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVD 760 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCC------CCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccC
Confidence 99974 3578899999999999999998 889999999999999998765443222 2
Q ss_pred CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 667 GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 667 gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
.|...|.+++|+|++.+|++|+.| |.|+|||+
T Consensus 761 ~~~~~V~~v~ws~~~~~lva~~~d--------G~I~i~~~ 792 (793)
T PLN00181 761 DASQFISSVCWRGQSSTLVAANST--------GNIKILEM 792 (793)
T ss_pred CCCcEEEEEEEcCCCCeEEEecCC--------CcEEEEec
Confidence 345579999999999999999998 99999997
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=233.33 Aligned_cols=233 Identities=18% Similarity=0.258 Sum_probs=194.9
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
++.+..++++++|+...... .+...+.+|...|+.+++.++.. .+++|+.|++|+| |+. .
T Consensus 174 l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~~----~l~s~s~D~tiri--wd~------------~ 233 (456)
T KOG0266|consen 174 LAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDGS----YLLSGSDDKTLRI--WDL------------K 233 (456)
T ss_pred EEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCCc----EEEEecCCceEEE--eec------------c
Confidence 55666778899999855432 34555689999999999666665 8999999999999 441 1
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCC
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~ 637 (1496)
..+..++++.||...|++++|+|+ +++++||+.|++|++||++++++...+.+|.++|..++|+++
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p~---------g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d----- 299 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSPD---------GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPD----- 299 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecCC---------CCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCC-----
Confidence 345788999999999999999998 799999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc--EEEEecCCCCC--cEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 638 WSDCFLSVGEDFSVALASLETLR--VERMFPGHPNY--PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~~~~--~l~~~~gH~~~--V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
++.+++++.|+.|++||+.+++ ++..+.++... ++.++|+|+++++++++.| +.+++||+..+...+
T Consensus 300 -~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d--------~~~~~w~l~~~~~~~ 370 (456)
T KOG0266|consen 300 -GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD--------RTLKLWDLRSGKSVG 370 (456)
T ss_pred -CCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC--------CeEEEEEccCCccee
Confidence 9999999999999999999999 67888888776 8999999999999999998 999999999999999
Q ss_pred EEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecccc
Q 000450 714 VLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1496)
Q Consensus 714 ~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~ 767 (1496)
.+.+|.... ...|.... ......++..+.|+.+.+|++..
T Consensus 371 ~~~~~~~~~-~~~~~~~~-------------~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 371 TYTGHSNLV-RCIFSPTL-------------STGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred eecccCCcc-eeEecccc-------------cCCCCeEEEEeCCceEEEEeCCc
Confidence 999999763 22233111 11223345566699999999754
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-20 Score=229.75 Aligned_cols=150 Identities=26% Similarity=0.460 Sum_probs=131.8
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.+++|+.||.|.| | +..+++++.++.||+++|.++.+.. ...+++|+.|++|++|
T Consensus 343 ~lvsgs~d~~v~V--W-------------~~~~~~cl~sl~gH~~~V~sl~~~~----------~~~~~Sgs~D~~IkvW 397 (537)
T KOG0274|consen 343 LLVSGSYDGTVKV--W-------------DPRTGKCLKSLSGHTGRVYSLIVDS----------ENRLLSGSLDTTIKVW 397 (537)
T ss_pred EEEEEecCceEEE--E-------------EhhhceeeeeecCCcceEEEEEecC----------cceEEeeeeccceEee
Confidence 6899999999999 3 3557899999999999999997753 2789999999999999
Q ss_pred ECCCC-ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecC-CCCCcEEEEEcCCCCEE
Q 000450 607 DLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG-HPNYPAKVVWDCPRGYI 684 (1496)
Q Consensus 607 Dl~tg-~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~g-H~~~V~~V~~spdg~~L 684 (1496)
|++++ ++++++.+|..-|..+.+. ++++++++.|++|++||..++++++.+.+ |...|..+++. ...+
T Consensus 398 dl~~~~~c~~tl~~h~~~v~~l~~~--------~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~i 467 (537)
T KOG0274|consen 398 DLRTKRKCIHTLQGHTSLVSSLLLR--------DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEI 467 (537)
T ss_pred cCCchhhhhhhhcCCcccccccccc--------cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceE
Confidence 99999 9999999999999777664 56999999999999999999999999998 67888888886 4678
Q ss_pred EEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCC
Q 000450 685 ACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1496)
Q Consensus 685 ~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~ 719 (1496)
++++.| +++++||++++++.+.+-.+.
T Consensus 468 l~s~~~--------~~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 468 LCSSDD--------GSVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred EEEecC--------CeeEEEecccCchhhhhhhcc
Confidence 888888 999999999999988774333
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-21 Score=221.25 Aligned_cols=237 Identities=15% Similarity=0.082 Sum_probs=192.5
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
++.+.+.+|-+.+|+... -..-..++.|...|+++.+.++.. .+++|..+|.|++ |+.-
T Consensus 110 RLltgs~SGEFtLWNg~~----fnFEtilQaHDs~Vr~m~ws~~g~----wmiSgD~gG~iKy--Wqpn----------- 168 (464)
T KOG0284|consen 110 RLLTGSQSGEFTLWNGTS----FNFETILQAHDSPVRTMKWSHNGT----WMISGDKGGMIKY--WQPN----------- 168 (464)
T ss_pred eeEeecccccEEEecCce----eeHHHHhhhhcccceeEEEccCCC----EEEEcCCCceEEe--cccc-----------
Confidence 466777778888898632 122233589999999999777776 9999999999999 5521
Q ss_pred cCCcceEEEEecCC-ccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCC
Q 000450 557 VNSHVSRQYFLGHT-GAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE 635 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~-~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~ 635 (1496)
. ..++.+++|. ..|++++|+|. +..++|+|.|++|+|||....+....+.+|.-.|.+++|+|.
T Consensus 169 m---nnVk~~~ahh~eaIRdlafSpn---------DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~--- 233 (464)
T KOG0284|consen 169 M---NNVKIIQAHHAEAIRDLAFSPN---------DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT--- 233 (464)
T ss_pred h---hhhHHhhHhhhhhhheeccCCC---------CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCc---
Confidence 1 2244455655 89999999997 789999999999999999999988999999999999999998
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 636 HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 636 ~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
...++|+|.|..|++||.++++|+.++.+|...|..+.|+|++++|++++.| ..++++|+++.+.++++
T Consensus 234 ---kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD--------~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 234 ---KGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKD--------QSCKVFDIRTMKELFTY 302 (464)
T ss_pred ---cceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCC--------ceEEEEehhHhHHHHHh
Confidence 7899999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred eCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccccccccccccc
Q 000450 716 RGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFST 776 (1496)
Q Consensus 716 ~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~~~~~~~ 776 (1496)
+||...++.+.+.+- ..++...|. .|+.+..|.+-..+.-.....
T Consensus 303 r~Hkkdv~~~~WhP~-----~~~lftsgg-----------~Dgsvvh~~v~~~~p~~~i~~ 347 (464)
T KOG0284|consen 303 RGHKKDVTSLTWHPL-----NESLFTSGG-----------SDGSVVHWVVGLEEPLGEIPP 347 (464)
T ss_pred hcchhhheeeccccc-----cccceeecc-----------CCCceEEEeccccccccCCCc
Confidence 999999988865531 112222222 378888887754443333333
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.9e-21 Score=210.20 Aligned_cols=210 Identities=18% Similarity=0.206 Sum_probs=182.7
Q ss_pred CcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEe
Q 000450 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1496)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~s 579 (1496)
++...+.+|.+-|.|+++-+.+. .+++|+.|++|+| ||..+++...++.||...|..++++
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~----wf~tgs~DrtikI---------------wDlatg~LkltltGhi~~vr~vavS 202 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNE----WFATGSADRTIKI---------------WDLATGQLKLTLTGHIETVRGVAVS 202 (460)
T ss_pred eehhhhhhccceEEEEeeCCCce----eEEecCCCceeEE---------------EEcccCeEEEeecchhheeeeeeec
Confidence 45556789999999999666554 8999999999999 4467889999999999999999999
Q ss_pred cCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 000450 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 659 (1496)
Q Consensus 580 pd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~ 659 (1496)
+. ..+|++++.|+.|++||++..+.++.+.+|-..|.+++..|. -+.+++|+.|.++++||+++.
T Consensus 203 ~r---------HpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPT------ldvl~t~grDst~RvWDiRtr 267 (460)
T KOG0285|consen 203 KR---------HPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPT------LDVLVTGGRDSTIRVWDIRTR 267 (460)
T ss_pred cc---------CceEEEecCCCeeEEEechhhhhHHHhccccceeEEEecccc------ceeEEecCCcceEEEeeeccc
Confidence 86 689999999999999999999999999999999999999998 789999999999999999999
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccce
Q 000450 660 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739 (1496)
Q Consensus 660 ~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~ 739 (1496)
..+..+.||..+|..|.+.|.+..+++|+.| ++|++||++.|+...++..|...+.+....+
T Consensus 268 ~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D--------~tvrlWDl~agkt~~tlt~hkksvral~lhP---------- 329 (460)
T KOG0285|consen 268 ASVHVLSGHTNPVASVMCQPTDPQVITGSHD--------STVRLWDLRAGKTMITLTHHKKSVRALCLHP---------- 329 (460)
T ss_pred ceEEEecCCCCcceeEEeecCCCceEEecCC--------ceEEEeeeccCceeEeeecccceeeEEecCC----------
Confidence 9999999999999999999999999999999 9999999999999999999997776653332
Q ss_pred EEcCCccccccceeeccCCcEEeecccccc
Q 000450 740 VLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1496)
Q Consensus 740 v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e 769 (1496)
...+|..+.-+.|++|.+...+
T Consensus 330 --------~e~~fASas~dnik~w~~p~g~ 351 (460)
T KOG0285|consen 330 --------KENLFASASPDNIKQWKLPEGE 351 (460)
T ss_pred --------chhhhhccCCccceeccCCccc
Confidence 1122333334579999874433
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-20 Score=207.04 Aligned_cols=84 Identities=23% Similarity=0.306 Sum_probs=75.7
Q ss_pred CCCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCccccccccccccc
Q 000450 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1496)
Q Consensus 14 ~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~ 93 (1496)
.++..|--+.||++|++|||++.|.+..+|++.. ....+...++.||..+|..+.
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~--d~~~kl~~tlvgh~~~V~yi~----------------------- 276 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVY--DVHFKLKKTLVGHSQPVSYIM----------------------- 276 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEec--CcceeeeeeeecccCceEEEE-----------------------
Confidence 3456799999999999999999999999999975 455778899999999999998
Q ss_pred ccccccCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 000450 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHCRR 126 (1496)
Q Consensus 94 ~~g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~ 126 (1496)
+|||..||++++.|-.+.+||+.+|.++.
T Consensus 277 ----wSPDdryLlaCg~~e~~~lwDv~tgd~~~ 305 (519)
T KOG0293|consen 277 ----WSPDDRYLLACGFDEVLSLWDVDTGDLRH 305 (519)
T ss_pred ----ECCCCCeEEecCchHheeeccCCcchhhh
Confidence 79999999999999999999999998774
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-20 Score=198.72 Aligned_cols=232 Identities=18% Similarity=0.177 Sum_probs=196.8
Q ss_pred cccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCC
Q 000450 480 LTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559 (1496)
Q Consensus 480 ~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s 559 (1496)
+...+.++++|+... +.++.++.+|...|...+..+++. .+++|+.|..+.+ ||+.+
T Consensus 34 tcGsdrtvrLWNp~r----g~liktYsghG~EVlD~~~s~Dns----kf~s~GgDk~v~v---------------wDV~T 90 (307)
T KOG0316|consen 34 TCGSDRTVRLWNPLR----GALIKTYSGHGHEVLDAALSSDNS----KFASCGGDKAVQV---------------WDVNT 90 (307)
T ss_pred EcCCCceEEeecccc----cceeeeecCCCceeeecccccccc----ccccCCCCceEEE---------------EEccc
Confidence 444677899999665 578899999999999988888877 8999999999998 55788
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCC--CceEEEEcccCCCEEEEEECCCCCCCC
Q 000450 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS--GNLITVMHHHVAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 560 ~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~t--g~~l~~~~~H~~~V~~l~~sPd~~~~~ 637 (1496)
|+..+.+.||.+.|+.+.|+.+ ...++|||.|.++++||.++ .++++.+......|.++.++
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNee---------sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~------- 154 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEE---------SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA------- 154 (307)
T ss_pred CeeeeecccccceeeEEEecCc---------ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec-------
Confidence 9999999999999999999986 78999999999999999875 56889998889999999986
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
++.++.|+.||+++.||++.|+....+-|| +|++++|++|++..+.++.| +++++-|-+||+++..+.|
T Consensus 155 -~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~--------stlrLlDk~tGklL~sYkG 223 (307)
T KOG0316|consen 155 -EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLD--------STLRLLDKETGKLLKSYKG 223 (307)
T ss_pred -ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeecc--------ceeeecccchhHHHHHhcc
Confidence 458999999999999999999876665554 69999999999999999999 9999999999999999999
Q ss_pred CCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccccccccccccc
Q 000450 718 TASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFST 776 (1496)
Q Consensus 718 h~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~~~~~~~ 776 (1496)
|.........| .+... .+++.-++||.+..|+|.......+.+.
T Consensus 224 hkn~eykldc~----l~qsd-----------thV~sgSEDG~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 224 HKNMEYKLDCC----LNQSD-----------THVFSGSEDGKVYFWDLVDETQISKLSV 267 (307)
T ss_pred cccceeeeeee----ecccc-----------eeEEeccCCceEEEEEeccceeeeeecc
Confidence 99999988777 22111 2334555699999999866555444444
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-20 Score=196.17 Aligned_cols=229 Identities=18% Similarity=0.208 Sum_probs=183.5
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
.+++.+.+-+|++|+... |.+..+++.....|+++.+.++.. .|+.|+ .-.|++++..
T Consensus 12 iLvsA~YDhTIRfWqa~t----G~C~rTiqh~dsqVNrLeiTpdk~----~LAaa~-~qhvRlyD~~------------- 69 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALT----GICSRTIQHPDSQVNRLEITPDKK----DLAAAG-NQHVRLYDLN------------- 69 (311)
T ss_pred EEEeccCcceeeeeehhc----CeEEEEEecCccceeeEEEcCCcc----hhhhcc-CCeeEEEEcc-------------
Confidence 356777889999999877 467778887778899999777776 566554 6788884433
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCC
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH 636 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~ 636 (1496)
..+..++.++.+|+.-|+++.|..+ ++++.+||.||+++|||++...+.+.|. |..+|++|..+|+
T Consensus 70 S~np~Pv~t~e~h~kNVtaVgF~~d---------grWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpn---- 135 (311)
T KOG0315|consen 70 SNNPNPVATFEGHTKNVTAVGFQCD---------GRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPN---- 135 (311)
T ss_pred CCCCCceeEEeccCCceEEEEEeec---------CeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCC----
Confidence 2233578999999999999999987 9999999999999999999977666664 6699999999998
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC-------------------------------------------------cEEEEecC
Q 000450 637 PWSDCFLSVGEDFSVALASLETL-------------------------------------------------RVERMFPG 667 (1496)
Q Consensus 637 ~~g~~l~Sgs~DgsV~lWdl~~~-------------------------------------------------~~l~~~~g 667 (1496)
+.-|++|..+|.|++||+.+. +++..|+.
T Consensus 136 --QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a 213 (311)
T KOG0315|consen 136 --QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA 213 (311)
T ss_pred --cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec
Confidence 677888888888888888642 24455678
Q ss_pred CCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC-eEEEEEeCCCCCceeeeeecccccccccceEEcCCcc
Q 000450 668 HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTS 746 (1496)
Q Consensus 668 H~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg-~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~ 746 (1496)
|.+.+..+.+|||++||++++.| .+++||+.++. +++..++||+.-+.-..|. .. |.
T Consensus 214 h~~~il~C~lSPd~k~lat~ssd--------ktv~iwn~~~~~kle~~l~gh~rWvWdc~FS------~d------g~-- 271 (311)
T KOG0315|consen 214 HNGHILRCLLSPDVKYLATCSSD--------KTVKIWNTDDFFKLELVLTGHQRWVWDCAFS------AD------GE-- 271 (311)
T ss_pred ccceEEEEEECCCCcEEEeecCC--------ceEEEEecCCceeeEEEeecCCceEEeeeec------cC------cc--
Confidence 88999999999999999999999 99999999998 8899999999777766565 12 22
Q ss_pred ccccceeeccCCcEEeeccccc
Q 000450 747 VSSLLLPIHEDGTFRQSQIQND 768 (1496)
Q Consensus 747 ~s~~l~~~~~D~~ir~W~l~~~ 768 (1496)
.++....|...|.|++...
T Consensus 272 ---YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 272 ---YLVTASSDHTARLWDLSAG 290 (311)
T ss_pred ---EEEecCCCCceeecccccC
Confidence 2444555899999987443
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=209.42 Aligned_cols=224 Identities=17% Similarity=0.241 Sum_probs=192.2
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
+.+++.+.++++||+.. +++..++.+|-..|..+++..-.. ++.++++|+.|+. || .
T Consensus 166 f~tgs~DrtikIwDlat----g~LkltltGhi~~vr~vavS~rHp----YlFs~gedk~VKC--wD-------------L 222 (460)
T KOG0285|consen 166 FATGSADRTIKIWDLAT----GQLKLTLTGHIETVRGVAVSKRHP----YLFSAGEDKQVKC--WD-------------L 222 (460)
T ss_pred EEecCCCceeEEEEccc----CeEEEeecchhheeeeeeecccCc----eEEEecCCCeeEE--Ee-------------c
Confidence 55667788999999987 588889999999999998555333 8999999999999 43 4
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCC
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~ 637 (1496)
+..+.++.+.||-..|.||+.+|. -+.|++|+.|.++++||+++...++++.+|..+|.+|.+.|-
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPT---------ldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~----- 288 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPT---------LDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT----- 288 (460)
T ss_pred hhhhhHHHhccccceeEEEecccc---------ceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecC-----
Confidence 455788899999999999999997 689999999999999999999999999999999999999987
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
...+++||.|++|++||++.|+...++..|...|.+++.+|....++++|.| .|+-|++..|+.+..+.|
T Consensus 289 -dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d---------nik~w~~p~g~f~~nlsg 358 (460)
T KOG0285|consen 289 -DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD---------NIKQWKLPEGEFLQNLSG 358 (460)
T ss_pred -CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc---------cceeccCCccchhhcccc
Confidence 6789999999999999999999999999999999999999999999998887 799999999999999999
Q ss_pred CCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccc
Q 000450 718 TASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1496)
Q Consensus 718 h~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~ 766 (1496)
|.+-+...... .+|+++.|.. .+.+-.|+-+
T Consensus 359 h~~iintl~~n-------sD~v~~~G~d-----------ng~~~fwdwk 389 (460)
T KOG0285|consen 359 HNAIINTLSVN-------SDGVLVSGGD-----------NGSIMFWDWK 389 (460)
T ss_pred ccceeeeeeec-------cCceEEEcCC-----------ceEEEEEecC
Confidence 99755554221 2445544443 6677788753
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-18 Score=208.10 Aligned_cols=475 Identities=13% Similarity=0.129 Sum_probs=292.2
Q ss_pred EEEEEEcCCC--CEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccccccccc
Q 000450 19 VTATSALTQP--PTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMG 96 (1496)
Q Consensus 19 Vtava~SpDg--~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g 96 (1496)
||++. .|+- .-|+.|+.+|.+.|||+.+ .+.+..+.++...||++.
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt-----~K~v~~f~~~~s~IT~ie-------------------------- 209 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRT-----GKVVYTFQEFFSRITAIE-------------------------- 209 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEecc-----CcEEEEecccccceeEec--------------------------
Confidence 55553 3442 4567899999999999996 467888999999999997
Q ss_pred cccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCC-eEEEEcccccccCCcccccccccccccc
Q 000450 97 KSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNP-RYVCIGCCFIDTNQLSDHHSFESVEGDL 175 (1496)
Q Consensus 97 ~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~-~ll~~G~~~id~~~l~~~~~~~~v~~~~ 175 (1496)
-+|-=..+|-|..||+|.+.|+..++.+...+.+ | |..+ -+.|..|| -++++|+.
T Consensus 210 -qsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d-~-g~Vt-slSFrtDG~p~las~~~-------------------- 265 (910)
T KOG1539|consen 210 -QSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD-W-GRVT-SLSFRTDGNPLLASGRS-------------------- 265 (910)
T ss_pred -cCCcceEEEEeccCceEEEEEcccCcEEEEEEcc-c-ccee-EEEeccCCCeeEEeccC--------------------
Confidence 3455667999999999999999999999887765 2 2233 34555555 56777765
Q ss_pred cccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEE-eCCCcEEEEECCCCCccc
Q 000450 176 VSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMV-DSVGRLQLVPISKESHLD 254 (1496)
Q Consensus 176 ~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llva-s~dG~V~lWdl~~~~~~~ 254 (1496)
++.+.+||...-++...+...+ -+.+....|.+. +-++++ +.|+.+++|-.+.+.
T Consensus 266 -------------~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~------epVl~ta~~DnSlk~~vfD~~d--- 321 (910)
T KOG1539|consen 266 -------------NGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPG------EPVLVTAGADNSLKVWVFDSGD--- 321 (910)
T ss_pred -------------CceEEEEEcCCCeeeeeeeccc--cCCcccceecCC------CceEeeccCCCceeEEEeeCCC---
Confidence 4789999998877666555322 223555665533 235665 999999999988552
Q ss_pred cccCCCcccCCCccceeeeccCcccCceEEEEe-cCCcEEEEEeCCeEEEEEcCCCc--ccceeee---ec--ceeEee-
Q 000450 255 REEGNGLCKSSSQLDMAILQNGVVEGGHLVSVA-TCGNIIALVLKDHCIFRLLGSGS--TIGEICF---VD--NLFCLE- 325 (1496)
Q Consensus 255 ~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s-~dg~~l~t~~~~~~~~~l~d~~~--~ige~~~---~~--~~l~~~- 325 (1496)
+ .++ .+ +...+|++.-.++.|- .+|..+++...++ .+|.+.... .-++... +. ..+...
T Consensus 322 g--~pR------~L---R~R~GHs~Pp~~irfy~~~g~~ilsa~~Dr-t~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~ 389 (910)
T KOG1539|consen 322 G--VPR------LL---RSRGGHSAPPSCIRFYGSQGHFILSAKQDR-TLRSFSVISESQSQELGQLHNKKRAKKVNVFS 389 (910)
T ss_pred C--cch------he---eeccCCCCCchheeeeccCcEEEEecccCc-chhhhhhhHHHHhHhhcccccccccccccccc
Confidence 1 111 22 3456677777888876 5588888877776 344444321 1111100 00 000000
Q ss_pred CCCCCceeeeeEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEecCCCCCcccCeeeecCcCCCCCceeeEEE
Q 000450 326 GGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHF 405 (1496)
Q Consensus 326 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~~~~~~~ip~~~~~~~~~~~~~f 405 (1496)
...-..+.+..+..+. +. ....++.+...-.+-.++.|+ +.+...+.-.+ +..+..+++
T Consensus 390 ~~~~k~p~i~~fa~~~--~R--------E~~W~Nv~~~h~~~~~~~tW~--~~n~~~G~~~L---~~~~~~~~~------ 448 (910)
T KOG1539|consen 390 TEKLKLPPIVEFAFEN--AR--------EKEWDNVITAHKGKRSAYTWN--FRNKTSGRHVL---DPKRFKKDD------ 448 (910)
T ss_pred hhhhcCCcceeeeccc--ch--------hhhhcceeEEecCcceEEEEe--ccCcccccEEe---cCccccccC------
Confidence 0000001111111100 00 000011222211222233332 22222221110 000000000
Q ss_pred eecceeeeeeeeeeccccccccccCeEEEEEccccCCCCCcceeEeccCCceeeeccccccccCCCCcccceeecccccC
Q 000450 406 IQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQD 485 (1496)
Q Consensus 406 ~~~~~~l~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~ 485 (1496)
....+ +. .+-|++| -+ +....|
T Consensus 449 ----~~~~a-----------------v~-vs~CGNF-------~~-----------------------------IG~S~G 470 (910)
T KOG1539|consen 449 ----INATA-----------------VC-VSFCGNF-------VF-----------------------------IGYSKG 470 (910)
T ss_pred ----cceEE-----------------EE-EeccCce-------EE-----------------------------EeccCC
Confidence 00000 10 0123332 01 122233
Q ss_pred ccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEE
Q 000450 486 TVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY 565 (1496)
Q Consensus 486 ~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~ 565 (1496)
.|..++...+.+++..-+ -..|...|+.+++-.-+. .+++++.+|.+..|.+. ....+..
T Consensus 471 ~Id~fNmQSGi~r~sf~~-~~ah~~~V~gla~D~~n~----~~vsa~~~Gilkfw~f~---------------~k~l~~~ 530 (910)
T KOG1539|consen 471 TIDRFNMQSGIHRKSFGD-SPAHKGEVTGLAVDGTNR----LLVSAGADGILKFWDFK---------------KKVLKKS 530 (910)
T ss_pred eEEEEEcccCeeeccccc-CccccCceeEEEecCCCc----eEEEccCcceEEEEecC---------------Ccceeee
Confidence 444444443332211110 157899999998766665 89999999999995443 2223333
Q ss_pred EecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEE
Q 000450 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1496)
Q Consensus 566 l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sg 645 (1496)
+.- ...++++.++.. ...++.+..|..|++.|..+.+..+.|.+|++.|+.+.|+|| |+.++++
T Consensus 531 l~l-~~~~~~iv~hr~---------s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D------grWlisa 594 (910)
T KOG1539|consen 531 LRL-GSSITGIVYHRV---------SDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD------GRWLISA 594 (910)
T ss_pred ecc-CCCcceeeeeeh---------hhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC------CcEEEEe
Confidence 321 235778888875 688999999999999999999999999999999999999999 9999999
Q ss_pred eCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 646 GEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 646 s~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
+.|++|++||+.++.++-.+. -..+++.+.|+|+|++|+|...| ..-||+|--++
T Consensus 595 smD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd-------~~gIylWsNks 649 (910)
T KOG1539|consen 595 SMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVD-------QNGIYLWSNKS 649 (910)
T ss_pred ecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEec-------CceEEEEEchh
Confidence 999999999999999987774 45678999999999999999987 25699997554
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-19 Score=213.37 Aligned_cols=313 Identities=16% Similarity=0.182 Sum_probs=227.9
Q ss_pred CCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccccccc
Q 000450 15 PSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNV 94 (1496)
Q Consensus 15 psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~ 94 (1496)
-+.+|-.++|.|..++|.|+=+.|.|.+||..- ......+.+|.+||..+.
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM-----~tli~rFdeHdGpVRgv~------------------------ 58 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM-----GTLIDRFDEHDGPVRGVD------------------------ 58 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhh-----hhHHhhhhccCCccceee------------------------
Confidence 357899999999999999999999999999873 356778889999999998
Q ss_pred cccccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCccccccccccccc
Q 000450 95 MGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGD 174 (1496)
Q Consensus 95 ~g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~ 174 (1496)
|-+.++++|||++|-.|+||+..+.+|+.+..-+ .+....+.+.++-+|++.+..+
T Consensus 59 ---FH~~qplFVSGGDDykIkVWnYk~rrclftL~GH--lDYVRt~~FHheyPWIlSASDD------------------- 114 (1202)
T KOG0292|consen 59 ---FHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGH--LDYVRTVFFHHEYPWILSASDD------------------- 114 (1202)
T ss_pred ---ecCCCCeEEecCCccEEEEEecccceehhhhccc--cceeEEeeccCCCceEEEccCC-------------------
Confidence 6778999999999999999999999999775433 1122233344567799888776
Q ss_pred ccccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCccc
Q 000450 175 LVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLD 254 (1496)
Q Consensus 175 ~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~ 254 (1496)
.+|+||+-.+..++.++.. +.+- |-|..|.|. + +.++.|+-|.+|||||+..-+.
T Consensus 115 ---------------QTIrIWNwqsr~~iavltG-HnHY--VMcAqFhpt---E--DlIVSaSLDQTVRVWDisGLRk-- 169 (1202)
T KOG0292|consen 115 ---------------QTIRIWNWQSRKCIAVLTG-HNHY--VMCAQFHPT---E--DLIVSASLDQTVRVWDISGLRK-- 169 (1202)
T ss_pred ---------------CeEEEEeccCCceEEEEec-CceE--EEeeccCCc---c--ceEEEecccceEEEEeecchhc--
Confidence 7999999999999998886 3332 666677643 1 3456669999999999976520
Q ss_pred cccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCCcccceeeeecceeEeeCCCCCceee
Q 000450 255 REEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVI 334 (1496)
Q Consensus 255 ~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~~~l~d~~~~ige~~~~~~~l~~~~~~~~~~~v 334 (1496)
.+..++ + ..+ ++ .
T Consensus 170 -------------------k~~~pg-----~-----------~e~--~~------~------------------------ 182 (1202)
T KOG0292|consen 170 -------------------KNKAPG-----S-----------LED--QM------R------------------------ 182 (1202)
T ss_pred -------------------cCCCCC-----C-----------chh--hh------h------------------------
Confidence 110000 0 000 00 0
Q ss_pred eeEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEecCCCCCcccCeeeecCcCCCCCceeeEEEeecceeeee
Q 000450 335 GAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLR 414 (1496)
Q Consensus 335 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~~~~~~~ip~~~~~~~~~~~~~f~~~~~~l~~ 414 (1496)
+.. . .++-|+. +
T Consensus 183 ~~~-~--------------------------------------~~dLfg~------~----------------------- 194 (1202)
T KOG0292|consen 183 GQQ-G--------------------------------------NSDLFGQ------T----------------------- 194 (1202)
T ss_pred ccc-c--------------------------------------chhhcCC------c-----------------------
Confidence 000 0 0000000 0
Q ss_pred eeeeeccccccccccCeEEEEEccccCCCCCcceeEeccCCceeeeccccccccCCCCcccceeecccccCccccccccC
Q 000450 415 METVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVD 494 (1496)
Q Consensus 415 v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~i~lWd~~~ 494 (1496)
+.++ |.+
T Consensus 195 --------------DaVV----------------K~V------------------------------------------- 201 (1202)
T KOG0292|consen 195 --------------DAVV----------------KHV------------------------------------------- 201 (1202)
T ss_pred --------------Ceee----------------eee-------------------------------------------
Confidence 0001 122
Q ss_pred CCCCCCcccccccCCccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCcc
Q 000450 495 SRQAGDGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGA 572 (1496)
Q Consensus 495 ~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~ 572 (1496)
+.||...|+..+ |+|. .+++|+.|..|++|+|+ ..+.|.++ +.+||.+.
T Consensus 202 ----------LEGHDRGVNwaA------fhpTlpliVSG~DDRqVKlWrmn-------etKaWEvD------tcrgH~nn 252 (1202)
T KOG0292|consen 202 ----------LEGHDRGVNWAA------FHPTLPLIVSGADDRQVKLWRMN-------ETKAWEVD------TCRGHYNN 252 (1202)
T ss_pred ----------ecccccccceEE------ecCCcceEEecCCcceeeEEEec-------cccceeeh------hhhcccCC
Confidence 234666677766 8884 89999999999998887 23346554 45799999
Q ss_pred EEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEE
Q 000450 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 652 (1496)
Q Consensus 573 V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~ 652 (1496)
|.|+.|||. .++++|.|.|++|++||+...+.+++|+...+..+.++.+|. .+.|+.| -|+-+.
T Consensus 253 Vssvlfhp~---------q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~------lNLfAAg-HDsGm~ 316 (1202)
T KOG0292|consen 253 VSSVLFHPH---------QDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPE------LNLFAAG-HDSGMI 316 (1202)
T ss_pred cceEEecCc---------cceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCC------cceeeee-cCCceE
Confidence 999999997 789999999999999999999999999988899999999998 7777766 566666
Q ss_pred EEECCC
Q 000450 653 LASLET 658 (1496)
Q Consensus 653 lWdl~~ 658 (1496)
++-++.
T Consensus 317 VFkleR 322 (1202)
T KOG0292|consen 317 VFKLER 322 (1202)
T ss_pred EEEEcc
Confidence 776653
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=202.25 Aligned_cols=256 Identities=19% Similarity=0.235 Sum_probs=198.4
Q ss_pred eEEEEEccccCCCCCcceeEeccCCce--eeeccccccccCCCCcccceeecccccCccccccccCCCCCCCcccccccC
Q 000450 431 YISVWSLSQKHSGPGKQCRMVGEGFSF--VDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHK 508 (1496)
Q Consensus 431 ~v~vwsl~~~~~~~~~~~k~l~~G~~~--~~w~~~~~~~~~~dG~~i~~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h 508 (1496)
..++|++.++. -. .+.+.++.+ ..|.... +..+ .+.+++.+.++++|....+.........-.||
T Consensus 126 ~~riWd~~Gk~---~~--~~~Ght~~ik~v~~v~~n----~~~~----~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GH 192 (423)
T KOG0313|consen 126 TSRIWDLKGKS---IK--TIVGHTGPIKSVAWVIKN----SSSC----LFVSASMDQTLRLWKWNVGENKVKALKVCRGH 192 (423)
T ss_pred eeEEEecCCce---EE--EEecCCcceeeeEEEecC----Cccc----eEEEecCCceEEEEEecCchhhhhHHhHhccc
Confidence 47899865542 10 133344433 5676654 1122 47788899999999998876655555556799
Q ss_pred CccEEEEEeeccccccCCEEEEEEcCCcEEEEEecc-----cccCCC-----CCCccccCCcceEEEEecCCccEEEEEE
Q 000450 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL-----FERHNS-----PGASLKVNSHVSRQYFLGHTGAVLCLAA 578 (1496)
Q Consensus 509 ~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~-----l~~~d~-----~~~~~d~~s~~~~~~l~gH~~~V~~La~ 578 (1496)
...|-++.+.++.. ++++|+.|..+.||+... ++.... ..+.....++.++.++.||+++|.++.|
T Consensus 193 k~~V~sVsv~~sgt----r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 193 KRSVDSVSVDSSGT----RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred ccceeEEEecCCCC----eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 99999999888887 999999999999965211 111100 0011123345678899999999999999
Q ss_pred ecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q 000450 579 HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1496)
Q Consensus 579 spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~ 658 (1496)
++ ...+.|+|.|.+|+.||+.++.++.++.+. .++.++.++|. .+++++||.|..++|||.++
T Consensus 269 ~d----------~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~------~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 269 SD----------ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPL------SKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred cC----------CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccc------cceeeecCCCCceeecCCCC
Confidence 87 588999999999999999999999888764 57999999998 89999999999999999987
Q ss_pred Cc---EEEEecCCCCCcEEEEEcCCCCEE-EEEEcCCCCCCCCCCEEEEEECCCCe-EEEEEeCCCCCceeeeee
Q 000450 659 LR---VERMFPGHPNYPAKVVWDCPRGYI-ACLCRDHSRTSDAVDVLFIWDVKTGA-RERVLRGTASHSMFDHFC 728 (1496)
Q Consensus 659 ~~---~l~~~~gH~~~V~~V~~spdg~~L-~tgs~D~sg~~D~dg~V~VWDl~tg~-~~~~l~gh~a~vi~~~~~ 728 (1496)
+. ..++|.||.+.|.++.|+|...|+ ++++.| +++++||+++.. .+..+.+|...++.+.+.
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D--------~t~klWDvRS~k~plydI~~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD--------NTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN 398 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEEecC--------CeEEEEEeccCCCcceeeccCCceEEEEecc
Confidence 53 457899999999999999987755 566666 999999999977 899999999988887665
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.4e-20 Score=226.17 Aligned_cols=228 Identities=20% Similarity=0.192 Sum_probs=192.2
Q ss_pred eeecccccCccccccccCCCCCCCcccc-cccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDD-FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~-~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~ 555 (1496)
.+...+.++++++|+..+. ..... +.+|.+.|+++++.+... .+++|+.|.+++| |
T Consensus 220 ~~~~~s~~~tl~~~~~~~~----~~i~~~l~GH~g~V~~l~~~~~~~----~lvsgS~D~t~rv---------------W 276 (537)
T KOG0274|consen 220 FFKSGSDDSTLHLWDLNNG----YLILTRLVGHFGGVWGLAFPSGGD----KLVSGSTDKTERV---------------W 276 (537)
T ss_pred eEEecCCCceeEEeecccc----eEEEeeccCCCCCceeEEEecCCC----EEEEEecCCcEEe---------------E
Confidence 4667778889999998874 44445 899999999999776444 8999999999999 3
Q ss_pred ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCC
Q 000450 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE 635 (1496)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~ 635 (1496)
+..++.+..++.||.+.|.|+... +..+++||.|.+|++|++.++.+++.+.+|.++|+++.++
T Consensus 277 d~~sg~C~~~l~gh~stv~~~~~~-----------~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~----- 340 (537)
T KOG0274|consen 277 DCSTGECTHSLQGHTSSVRCLTID-----------PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD----- 340 (537)
T ss_pred ecCCCcEEEEecCCCceEEEEEcc-----------CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-----
Confidence 456789999999999999999865 4678899999999999999999999999999999999986
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC-eEEEE
Q 000450 636 HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERV 714 (1496)
Q Consensus 636 ~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg-~~~~~ 714 (1496)
+..+++|+.|++|++||+.+++|++.+.||..+|.++.+.+. .++++|+.| ++|++||++++ +++.+
T Consensus 341 ---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D--------~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 341 ---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD--------TTIKVWDLRTKRKCIHT 408 (537)
T ss_pred ---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeec--------cceEeecCCchhhhhhh
Confidence 359999999999999999999999999999999999988765 789999998 99999999999 99999
Q ss_pred EeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccccccccccc
Q 000450 715 LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAF 774 (1496)
Q Consensus 715 l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~~~~~ 774 (1496)
+.+|.+-+..+.+- ++... ....|+++|+|+....+.....
T Consensus 409 l~~h~~~v~~l~~~--------------~~~Lv-----s~~aD~~Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 409 LQGHTSLVSSLLLR--------------DNFLV-----SSSADGTIKLWDAEEGECLRTL 449 (537)
T ss_pred hcCCcccccccccc--------------cceeE-----eccccccEEEeecccCceeeee
Confidence 99999876443221 23333 3334999999987666544333
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-20 Score=211.04 Aligned_cols=221 Identities=15% Similarity=0.207 Sum_probs=178.3
Q ss_pred eecccccCccccccccCCCCCCCcccccccCC-ccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKE-KIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGAS 554 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~-~~Vts~~~~s~~~f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~ 554 (1496)
+..+..++.||.|+..- +.+..+.+|. ..|++++ |+|+ .++++++||+|+| |++.
T Consensus 153 miSgD~gG~iKyWqpnm-----nnVk~~~ahh~eaIRdla------fSpnDskF~t~SdDg~iki--Wdf~--------- 210 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPNM-----NNVKIIQAHHAEAIRDLA------FSPNDSKFLTCSDDGTIKI--WDFR--------- 210 (464)
T ss_pred EEEcCCCceEEecccch-----hhhHHhhHhhhhhhheec------cCCCCceeEEecCCCeEEE--Eecc---------
Confidence 44555678999999653 3445566666 8899998 5554 8999999999999 4422
Q ss_pred cccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCC
Q 000450 555 LKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634 (1496)
Q Consensus 555 ~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~ 634 (1496)
..+....|.||.-.|.|++|||. ..+++|||.|..|++||.++|.++.++.+|...|..+.|+|+
T Consensus 211 ----~~kee~vL~GHgwdVksvdWHP~---------kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n-- 275 (464)
T KOG0284|consen 211 ----MPKEERVLRGHGWDVKSVDWHPT---------KGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPN-- 275 (464)
T ss_pred ----CCchhheeccCCCCcceeccCCc---------cceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCC--
Confidence 23455678999999999999997 789999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCC-CCEEEEEEcCCCCCCCCCCEEEEEECCCCeEE-
Q 000450 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP-RGYIACLCRDHSRTSDAVDVLFIWDVKTGARE- 712 (1496)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spd-g~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~- 712 (1496)
+++|+++|.|.+++++|+++.+.++.+.+|...|+++.|+|- ..++.+|+.| |.|..|.+..-+.+
T Consensus 276 ----~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D--------gsvvh~~v~~~~p~~ 343 (464)
T KOG0284|consen 276 ----GNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSD--------GSVVHWVVGLEEPLG 343 (464)
T ss_pred ----CCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCC--------CceEEEecccccccc
Confidence 899999999999999999999999999999999999999995 4577778887 99999999844433
Q ss_pred EEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeec
Q 000450 713 RVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1496)
Q Consensus 713 ~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~ 764 (1496)
..-.+|...+....+.+ + |....++ +.|.++|.|.
T Consensus 344 ~i~~AHd~~iwsl~~hP------l------Ghil~tg-----snd~t~rfw~ 378 (464)
T KOG0284|consen 344 EIPPAHDGEIWSLAYHP------L------GHILATG-----SNDRTVRFWT 378 (464)
T ss_pred CCCcccccceeeeeccc------c------ceeEeec-----CCCcceeeec
Confidence 33456776666665552 1 2222222 2388999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-19 Score=223.10 Aligned_cols=203 Identities=22% Similarity=0.309 Sum_probs=170.4
Q ss_pred CccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccC
Q 000450 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW 588 (1496)
Q Consensus 509 ~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~ 588 (1496)
...|++..+.++.. .+++++.|+.+++|.+... ++ ...+.+.+|...|.+++|+|+
T Consensus 159 ~~sv~~~~fs~~g~----~l~~~~~~~~i~~~~~~~~---------~~----~~~~~l~~h~~~v~~~~fs~d------- 214 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGR----ALAAASSDGLIRIWKLEGI---------KS----NLLRELSGHTRGVSDVAFSPD------- 214 (456)
T ss_pred cCceEEEEEcCCCC----eEEEccCCCcEEEeecccc---------cc----hhhccccccccceeeeEECCC-------
Confidence 67788887555555 8999999999999544210 00 245566899999999999998
Q ss_pred cCCCEEEEEeCCCcEEEEEC-CCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecC
Q 000450 589 SFNEVLVSGSMDCSIRIWDL-GSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG 667 (1496)
Q Consensus 589 ~~~~~L~SGs~DgtV~lWDl-~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~g 667 (1496)
++++++|+.|++|++||+ ..+..++++.+|...|++++|+|+ ++.++||+.|++|++||+++++++..+.+
T Consensus 215 --~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~------g~~i~Sgs~D~tvriWd~~~~~~~~~l~~ 286 (456)
T KOG0266|consen 215 --GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPD------GNLLVSGSDDGTVRIWDVRTGECVRKLKG 286 (456)
T ss_pred --CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCC------CCEEEEecCCCcEEEEeccCCeEEEeeec
Confidence 789999999999999999 566899999999999999999999 89999999999999999999999999999
Q ss_pred CCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe--EEEEEeCCCCC--ceeeeeecccccccccceEEcC
Q 000450 668 HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA--RERVLRGTASH--SMFDHFCKGISMNSISGSVLNG 743 (1496)
Q Consensus 668 H~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~--~~~~l~gh~a~--vi~~~~~~~~~~~~~sg~v~~g 743 (1496)
|...|++++|++++.+|++++.| +.|+|||+.+++ +...+.++... +..+.|++ + |
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp----~--------~ 346 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYD--------GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP----N--------G 346 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCC--------ccEEEEECCCCceeeeecccCCCCCCceeEEEECC----C--------C
Confidence 99999999999999999999888 999999999999 67888888876 44455552 1 3
Q ss_pred CccccccceeeccCCcEEeeccccc
Q 000450 744 NTSVSSLLLPIHEDGTFRQSQIQND 768 (1496)
Q Consensus 744 ~~~~s~~l~~~~~D~~ir~W~l~~~ 768 (1496)
.. ++....|+.+++|++...
T Consensus 347 ~~-----ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 347 KY-----LLSASLDRTLKLWDLRSG 366 (456)
T ss_pred cE-----EEEecCCCeEEEEEccCC
Confidence 33 334444889999998543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.8e-20 Score=219.99 Aligned_cols=224 Identities=21% Similarity=0.216 Sum_probs=190.3
Q ss_pred ecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 479 ~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
.++.-+|.|++||..- +.++..|.+|.++|+.+. |||. .+|+|+.|-.|+||++.
T Consensus 25 LtslHsG~IQlWDYRM----~tli~rFdeHdGpVRgv~------FH~~qplFVSGGDDykIkVWnYk------------- 81 (1202)
T KOG0292|consen 25 LTSLHSGVIQLWDYRM----GTLIDRFDEHDGPVRGVD------FHPTQPLFVSGGDDYKIKVWNYK------------- 81 (1202)
T ss_pred EEeecCceeeeehhhh----hhHHhhhhccCCccceee------ecCCCCeEEecCCccEEEEEecc-------------
Confidence 3455678999999765 367888999999999999 6665 89999999999996655
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCC
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH 636 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~ 636 (1496)
+.++..+|.||-+.|..+.||+. -.+++|+|+|.||+||+..+++++..+++|...|.|..|+|.
T Consensus 82 --~rrclftL~GHlDYVRt~~FHhe---------yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt---- 146 (1202)
T KOG0292|consen 82 --TRRCLFTLLGHLDYVRTVFFHHE---------YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT---- 146 (1202)
T ss_pred --cceehhhhccccceeEEeeccCC---------CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCc----
Confidence 45889999999999999999997 789999999999999999999999999999999999999997
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC---------------------------c--EEEEecCCCCCcEEEEEcCCCCEEEEE
Q 000450 637 PWSDCFLSVGEDFSVALASLETL---------------------------R--VERMFPGHPNYPAKVVWDCPRGYIACL 687 (1496)
Q Consensus 637 ~~g~~l~Sgs~DgsV~lWdl~~~---------------------------~--~l~~~~gH~~~V~~V~~spdg~~L~tg 687 (1496)
...++|+|-|.+||+||+... . ..+.+.||...|+-++|+|.-..+++|
T Consensus 147 --EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG 224 (1202)
T KOG0292|consen 147 --EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG 224 (1202)
T ss_pred --cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec
Confidence 689999999999999998531 1 124567999999999999999999999
Q ss_pred EcCCCCCCCCCCEEEEEECCCCeE--EEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 688 CRDHSRTSDAVDVLFIWDVKTGAR--ERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 688 s~D~sg~~D~dg~V~VWDl~tg~~--~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
+.| ..|++|.+..-+. +-++.||...+.++.|.+. ...+++.++|++||+|++
T Consensus 225 ~DD--------RqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~-----------------q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 225 ADD--------RQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPH-----------------QDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred CCc--------ceeeEEEeccccceeehhhhcccCCcceEEecCc-----------------cceeEecCCCccEEEEec
Confidence 888 9999999965443 5678999998888877632 123456667999999998
Q ss_pred cc
Q 000450 766 QN 767 (1496)
Q Consensus 766 ~~ 767 (1496)
..
T Consensus 280 ~k 281 (1202)
T KOG0292|consen 280 TK 281 (1202)
T ss_pred cc
Confidence 44
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-19 Score=205.36 Aligned_cols=141 Identities=18% Similarity=0.163 Sum_probs=112.2
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEE-EecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY-FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~-l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~l 605 (1496)
++++.++|++++||.|+. +.+++. ...+.....|+..+|. +.+++.-+.|..|.+
T Consensus 356 rFissSDdks~riWe~~~---------------~v~ik~i~~~~~hsmP~~~~~P~---------~~~~~aQs~dN~i~i 411 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRI---------------PVPIKNIADPEMHTMPCLTLHPN---------GKWFAAQSMDNYIAI 411 (503)
T ss_pred eEeeeccCccEEEEEcCC---------------CccchhhcchhhccCcceecCCC---------CCeehhhccCceEEE
Confidence 567778888999976652 111111 1222334568888997 899999999999999
Q ss_pred EECCCCc---eEEEEcccC--CCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCC
Q 000450 606 WDLGSGN---LITVMHHHV--APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP 680 (1496)
Q Consensus 606 WDl~tg~---~l~~~~~H~--~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spd 680 (1496)
+.+...- ....|.+|. |.-..+.|+|| |.+|++|+.||.+.+||.++-+.+..+..|...+..+.|+|.
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpD------G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD------GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV 485 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCC------CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC
Confidence 9976432 335678884 56778999999 999999999999999999999999999999999999999996
Q ss_pred C-CEEEEEEcCCCCCCCCCCEEEEEE
Q 000450 681 R-GYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 681 g-~~L~tgs~D~sg~~D~dg~V~VWD 705 (1496)
. ..+++++.| |.|++||
T Consensus 486 e~Skvat~~w~--------G~Ikiwd 503 (503)
T KOG0282|consen 486 EPSKVATCGWD--------GLIKIWD 503 (503)
T ss_pred CcceeEecccC--------ceeEecC
Confidence 5 478888877 9999996
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-19 Score=211.80 Aligned_cols=203 Identities=17% Similarity=0.147 Sum_probs=175.7
Q ss_pred cccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcc
Q 000450 482 FCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV 561 (1496)
Q Consensus 482 ~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~ 561 (1496)
+.+..+++++.... .-+..|..|.+-|+++++.|... .+++++.|-.|++|+|+. .-.
T Consensus 74 sDD~~IrVfnynt~----ekV~~FeAH~DyIR~iavHPt~P----~vLtsSDDm~iKlW~we~--------------~wa 131 (794)
T KOG0276|consen 74 SDDMQIRVFNYNTG----EKVKTFEAHSDYIRSIAVHPTLP----YVLTSSDDMTIKLWDWEN--------------EWA 131 (794)
T ss_pred cCCceEEEEecccc----eeeEEeeccccceeeeeecCCCC----eEEecCCccEEEEeeccC--------------cee
Confidence 44556677766543 44677899999999999555444 899999999999999883 125
Q ss_pred eEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCE
Q 000450 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1496)
Q Consensus 562 ~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~ 641 (1496)
+.+++.||+..|.+++|+|. +...++|++-|+||++|.+....+..++.+|...|++|.+-|.+ +..+
T Consensus 132 ~~qtfeGH~HyVMqv~fnPk--------D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~g----dkpy 199 (794)
T KOG0276|consen 132 CEQTFEGHEHYVMQVAFNPK--------DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGG----DKPY 199 (794)
T ss_pred eeeEEcCcceEEEEEEecCC--------CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCC----Ccce
Confidence 78999999999999999997 48899999999999999999999999999999999999998751 2349
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCC
Q 000450 642 FLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASH 721 (1496)
Q Consensus 642 l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~ 721 (1496)
++||+.|.+|++||.++..|++++.||...|..+.|+|.-..+++|+.| |+++||+..|-+++.++.-.-.+
T Consensus 200 lIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsED--------GTvriWhs~Ty~lE~tLn~gleR 271 (794)
T KOG0276|consen 200 LISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSED--------GTVRIWNSKTYKLEKTLNYGLER 271 (794)
T ss_pred EEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCC--------ccEEEecCcceehhhhhhcCCce
Confidence 9999999999999999999999999999999999999999999999999 99999999999888887766666
Q ss_pred ceeee
Q 000450 722 SMFDH 726 (1496)
Q Consensus 722 vi~~~ 726 (1496)
+.++.
T Consensus 272 vW~I~ 276 (794)
T KOG0276|consen 272 VWCIA 276 (794)
T ss_pred EEEEe
Confidence 66653
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-17 Score=196.36 Aligned_cols=193 Identities=13% Similarity=0.135 Sum_probs=150.5
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
++..+.+.+|+++|...+ ..+.+++.+|...|+++.|.-... ..+.++++.|..|.....+.-. .++....
T Consensus 519 LASasrdRlIHV~Dv~rn---y~l~qtld~HSssITsvKFa~~gl--n~~MiscGADksimFr~~qk~~----~g~~f~r 589 (1080)
T KOG1408|consen 519 LASASRDRLIHVYDVKRN---YDLVQTLDGHSSSITSVKFACNGL--NRKMISCGADKSIMFRVNQKAS----SGRLFPR 589 (1080)
T ss_pred hhhccCCceEEEEecccc---cchhhhhcccccceeEEEEeecCC--ceEEEeccCchhhheehhcccc----Cceeccc
Confidence 556667888999998765 457788999999999998655441 0166777778877652222100 0100000
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcc---cCCCEEEEEECCCCC
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH---HVAPVRQIILSPPQT 634 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~---H~~~V~~l~~sPd~~ 634 (1496)
..++ -.+..+..+++.|. ..++++++.|..|+|||+.+|+..+.|++ |.+....|...|.
T Consensus 590 ----~t~t--~~ktTlYDm~Vdp~---------~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPS-- 652 (1080)
T KOG1408|consen 590 ----HTQT--LSKTTLYDMAVDPT---------SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPS-- 652 (1080)
T ss_pred ----cccc--cccceEEEeeeCCC---------cceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCC--
Confidence 0001 11245778888886 78999999999999999999999999986 6677888999998
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
|.++++.+.|+++.++|.-+|+|+..+.||...|+.++|.+|-+.|++.+.| |.|.||.+..
T Consensus 653 ----giY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD--------gCIFvW~lp~ 714 (1080)
T KOG1408|consen 653 ----GIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD--------GCIFVWKLPL 714 (1080)
T ss_pred ----ccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCC--------ceEEEEECch
Confidence 9999999999999999999999999999999999999999999999999888 9999998854
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-19 Score=193.58 Aligned_cols=207 Identities=17% Similarity=0.160 Sum_probs=172.9
Q ss_pred cccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000450 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1496)
Q Consensus 505 ~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~ 584 (1496)
+.+|++.|....|.++.. .+++|+.|..|.+|+-. . .-+-...++||+++|..+.|.+|
T Consensus 43 l~gh~geI~~~~F~P~gs----~~aSgG~Dr~I~LWnv~--g------------dceN~~~lkgHsgAVM~l~~~~d--- 101 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGS----CFASGGSDRAIVLWNVY--G------------DCENFWVLKGHSGAVMELHGMRD--- 101 (338)
T ss_pred cCCCcceEEEEEECCCCC----eEeecCCcceEEEEecc--c------------cccceeeeccccceeEeeeeccC---
Confidence 578999999999555554 89999999999995421 1 11334567899999999999997
Q ss_pred cccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 000450 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 664 (1496)
Q Consensus 585 ~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~ 664 (1496)
+..++|+|.|.+|+.||+++|++++.+++|.+-|..+. |.. +-...++|++.|++++|||+++..++++
T Consensus 102 ------~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~--p~r---rg~~lv~SgsdD~t~kl~D~R~k~~~~t 170 (338)
T KOG0265|consen 102 ------GSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD--PSR---RGPQLVCSGSDDGTLKLWDIRKKEAIKT 170 (338)
T ss_pred ------CCEEEEecCCceEEEEecccceeeehhccccceeeecC--ccc---cCCeEEEecCCCceEEEEeecccchhhc
Confidence 89999999999999999999999999999999999887 431 1245889999999999999999888888
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCC
Q 000450 665 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGN 744 (1496)
Q Consensus 665 ~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~ 744 (1496)
+. ....++++.|.-++..+.+|+-| +.|++||++.++...++.||...++.+... ..|.
T Consensus 171 ~~-~kyqltAv~f~d~s~qv~sggId--------n~ikvWd~r~~d~~~~lsGh~DtIt~lsls------------~~gs 229 (338)
T KOG0265|consen 171 FE-NKYQLTAVGFKDTSDQVISGGID--------NDIKVWDLRKNDGLYTLSGHADTITGLSLS------------RYGS 229 (338)
T ss_pred cc-cceeEEEEEecccccceeecccc--------CceeeeccccCcceEEeecccCceeeEEec------------cCCC
Confidence 75 34579999999999999999998 999999999999999999999988887333 2266
Q ss_pred ccccccceeeccCCcEEeecccccc
Q 000450 745 TSVSSLLLPIHEDGTFRQSQIQNDE 769 (1496)
Q Consensus 745 ~~~s~~l~~~~~D~~ir~W~l~~~e 769 (1496)
...+..+ |.++|+|+.+.+-
T Consensus 230 ~llsnsM-----d~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 230 FLLSNSM-----DNTVRVWDVRPFA 249 (338)
T ss_pred ccccccc-----cceEEEEEecccC
Confidence 6666666 9999999985543
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-16 Score=180.13 Aligned_cols=485 Identities=14% Similarity=0.123 Sum_probs=285.7
Q ss_pred CCCceEEEEEEcCCCCEEEEEeCCC--------cEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCccccc
Q 000450 14 PPSHRVTATSALTQPPTLYTGGSDG--------SILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEH 85 (1496)
Q Consensus 14 ~psh~Vtava~SpDg~~LaTGs~DG--------~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~ 85 (1496)
.|...|-|++++||.-.++||-.-| .+++||-.+ .....++.+-...|+|++|
T Consensus 102 GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~-----L~TL~V~g~f~~GV~~vaF-------------- 162 (626)
T KOG2106|consen 102 GHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVT-----LSTLHVIGFFDRGVTCVAF-------------- 162 (626)
T ss_pred CCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccc-----ceeeeeeccccccceeeee--------------
Confidence 4666799999999998999885544 499999653 4455666666678999996
Q ss_pred ccccccccccccccCCCCEEEE---EeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEE-EcccccccCC
Q 000450 86 WKAENSSNVMGKSSLDNGALIS---ACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVC-IGCCFIDTNQ 161 (1496)
Q Consensus 86 ~~~~~~~~~~g~~s~d~~~LaS---as~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~-~G~~~id~~~ 161 (1496)
...++..+.. -+.+-.|.|||+..++.....+-.. .......+.|.+..+++ +|.
T Consensus 163 ------------sk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sn--e~v~~a~FHPtd~nliit~Gk------- 221 (626)
T KOG2106|consen 163 ------------SKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSN--EVVFLATFHPTDPNLIITCGK------- 221 (626)
T ss_pred ------------cccCCCceEEEecCCCccccchhhchhhhccCcceecc--ceEEEEEeccCCCcEEEEeCC-------
Confidence 1122222333 3556679999999876443322110 11122334555555544 443
Q ss_pred cccccccccccccccccccCCCCCCCCccEEEEEECCceEEEEE--EecCccccCCeEEEEEeeccCCCCceeEEEEeCC
Q 000450 162 LSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQT--VFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSV 239 (1496)
Q Consensus 162 l~~~~~~~~v~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~--l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~d 239 (1496)
+.+..|++.++.+..+ +|.+... ..|.+++|.+ + ++++.|+++
T Consensus 222 ----------------------------~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~e---n---gdviTgDS~ 266 (626)
T KOG2106|consen 222 ----------------------------GHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFLE---N---GDVITGDSG 266 (626)
T ss_pred ----------------------------ceEEEEEccCCceEEEeeccccccc-eEEEEEEEcC---C---CCEEeecCC
Confidence 6788888887766543 3443333 5688999883 3 458889999
Q ss_pred CcEEEEECCCCCccccccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCCc-ccceeeee
Q 000450 240 GRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGS-TIGEICFV 318 (1496)
Q Consensus 240 G~V~lWdl~~~~~~~~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~~~l~d~~~-~ige~~~~ 318 (1496)
|.|.+|+..... +. +++ . +|.+++.++...-+|.++- +.+++-+ -+||..- .+.++..|
T Consensus 267 G~i~Iw~~~~~~---------~~---k~~-----~-aH~ggv~~L~~lr~GtllS-GgKDRki-~~Wd~~y~k~r~~elP 326 (626)
T KOG2106|consen 267 GNILIWSKGTNR---------IS---KQV-----H-AHDGGVFSLCMLRDGTLLS-GGKDRKI-ILWDDNYRKLRETELP 326 (626)
T ss_pred ceEEEEeCCCce---------EE---eEe-----e-ecCCceEEEEEecCccEee-cCccceE-EeccccccccccccCc
Confidence 999999975441 11 122 2 5788888888888888776 6666643 3677332 22233222
Q ss_pred cceeEeeCCCCCceeeeeEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEecCCCCCcccCeeeecCcCCCCC
Q 000450 319 DNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSG 398 (1496)
Q Consensus 319 ~~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~~~~~~~ip~~~~~~~ 398 (1496)
+..- .+-...- . +..+.|++...
T Consensus 327 e~~G----------~iRtv~e-~----------------~~di~vGTtrN------------------------------ 349 (626)
T KOG2106|consen 327 EQFG----------PIRTVAE-G----------------KGDILVGTTRN------------------------------ 349 (626)
T ss_pred hhcC----------CeeEEec-C----------------CCcEEEeeccc------------------------------
Confidence 1100 0000000 0 00111111110
Q ss_pred ceeeEEEeecceeeeeeeeeeccccccccccCeEEEEEccccCCCCCcceeEeccCCceeeeccccccccCCCCccccee
Q 000450 399 VKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKS 478 (1496)
Q Consensus 399 ~~~~~~f~~~~~~l~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l 478 (1496)
+++ ++... ++++......|+ ..|....++..+ .+
T Consensus 350 ------------~iL------------------------~Gt~~-~~f~~~v~gh~d--elwgla~hps~~-------q~ 383 (626)
T KOG2106|consen 350 ------------FIL------------------------QGTLE-NGFTLTVQGHGD--ELWGLATHPSKN-------QL 383 (626)
T ss_pred ------------eEE------------------------Eeeec-CCceEEEEeccc--ceeeEEcCCChh-------he
Confidence 000 00000 000001111111 223322211111 36
Q ss_pred ecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCC-EEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY-AIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 479 ~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~-~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
.+...++.+++|+ ..++ ..... -...+.|.. |+|. .++.|+..|...|.+ .
T Consensus 384 ~T~gqdk~v~lW~--~~k~--~wt~~---~~d~~~~~~------fhpsg~va~Gt~~G~w~V~d---------------~ 435 (626)
T KOG2106|consen 384 LTCGQDKHVRLWN--DHKL--EWTKI---IEDPAECAD------FHPSGVVAVGTATGRWFVLD---------------T 435 (626)
T ss_pred eeccCcceEEEcc--CCce--eEEEE---ecCceeEee------ccCcceEEEeeccceEEEEe---------------c
Confidence 6777888999999 2211 11111 124455655 7776 789999999888833 3
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC-ceEEEE-cccCCCEEEEEECCCCCC
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVM-HHHVAPVRQIILSPPQTE 635 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg-~~l~~~-~~H~~~V~~l~~sPd~~~ 635 (1496)
++...+..-.. +.++++++|+|+ +.+||.|+.|+.|.+|-+... ...... +.|..+|+.+.|++|
T Consensus 436 e~~~lv~~~~d-~~~ls~v~ysp~---------G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~D--- 502 (626)
T KOG2106|consen 436 ETQDLVTIHTD-NEQLSVVRYSPD---------GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSD--- 502 (626)
T ss_pred ccceeEEEEec-CCceEEEEEcCC---------CCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCC---
Confidence 33233332233 789999999998 999999999999999998754 333222 334589999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCC--------------cEEEEe----cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCC
Q 000450 636 HPWSDCFLSVGEDFSVALASLETL--------------RVERMF----PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDA 697 (1496)
Q Consensus 636 ~~~g~~l~Sgs~DgsV~lWdl~~~--------------~~l~~~----~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~ 697 (1496)
++++.+.+.|..|..|..... .|..-| ..|...|..++-+.+++.+++|...
T Consensus 503 ---s~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~------- 572 (626)
T KOG2106|consen 503 ---SQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDF------- 572 (626)
T ss_pred ---CceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccC-------
Confidence 899999999999999943321 121111 1233445555556666666665555
Q ss_pred CCEEEEEECCC---CeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 698 VDVLFIWDVKT---GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 698 dg~V~VWDl~t---g~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
|+|+++...- ...-..+.||.+.+..+.|..+... +...-.|..+.+|.+
T Consensus 573 -g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~-----------------li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 573 -GKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSH-----------------LISTGKDTSIMQWRL 625 (626)
T ss_pred -ceEEEEccccCCCcccceeeccccceeEEEEEeeCCce-----------------EEecCCCceEEEEEe
Confidence 9999998643 3346788999999999877622111 122224888889975
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=207.52 Aligned_cols=185 Identities=15% Similarity=0.209 Sum_probs=148.2
Q ss_pred cccCCccEEEEEeec-cccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000450 505 FVHKEKIVSSSMVIS-ESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1496)
Q Consensus 505 ~~~h~~~Vts~~~~s-~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~ 583 (1496)
+.+|.+.|+++.+.+ +. ..+++|+.||.|++|+... .+ .......++..+.+|...|.+++|+|+
T Consensus 71 l~GH~~~V~~v~fsP~d~----~~LaSgS~DgtIkIWdi~~--~~------~~~~~~~~l~~L~gH~~~V~~l~f~P~-- 136 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDP----QKLFTASEDGTIMGWGIPE--EG------LTQNISDPIVHLQGHTKKVGIVSFHPS-- 136 (493)
T ss_pred EeCCCCCEEEEEEcCCCC----CEEEEEeCCCEEEEEecCC--Cc------cccccCcceEEecCCCCcEEEEEeCcC--
Confidence 578999999999444 22 3899999999999954431 10 000112456789999999999999996
Q ss_pred CcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 000450 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 663 (1496)
Q Consensus 584 ~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~ 663 (1496)
.+.+|++|+.|++|++||+.+++.+..+.+|...|.++.|+|+ +.+|++++.|++|++||+++++.+.
T Consensus 137 ------~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd------G~lLatgs~Dg~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 137 ------AMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD------GSLLCTTSKDKKLNIIDPRDGTIVS 204 (493)
T ss_pred ------CCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC------CCEEEEecCCCEEEEEECCCCcEEE
Confidence 1579999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred EecCCCCC-cEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe-EEEEEeCCC
Q 000450 664 MFPGHPNY-PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA-RERVLRGTA 719 (1496)
Q Consensus 664 ~~~gH~~~-V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~-~~~~l~gh~ 719 (1496)
.+.+|... +..+.|.+++..+++++.+ ++.| +.|++||+++.. .......+.
T Consensus 205 tl~~H~~~~~~~~~w~~~~~~ivt~G~s--~s~D--r~VklWDlr~~~~p~~~~~~d~ 258 (493)
T PTZ00421 205 SVEAHASAKSQRCLWAKRKDLIITLGCS--KSQQ--RQIMLWDTRKMASPYSTVDLDQ 258 (493)
T ss_pred EEecCCCCcceEEEEcCCCCeEEEEecC--CCCC--CeEEEEeCCCCCCceeEeccCC
Confidence 99999865 4578899998888876642 2223 899999998754 344444343
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-18 Score=194.37 Aligned_cols=232 Identities=16% Similarity=0.187 Sum_probs=184.2
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
-+.++.+++++++||.. |.....+.+|.+.|.+++.+..+. ....+++++.|.++++|.|+.-..
T Consensus 117 ~IltgsYDg~~riWd~~-----Gk~~~~~~Ght~~ik~v~~v~~n~-~~~~fvsas~Dqtl~Lw~~~~~~~--------- 181 (423)
T KOG0313|consen 117 WILTGSYDGTSRIWDLK-----GKSIKTIVGHTGPIKSVAWVIKNS-SSCLFVSASMDQTLRLWKWNVGEN--------- 181 (423)
T ss_pred eEEEeecCCeeEEEecC-----CceEEEEecCCcceeeeEEEecCC-ccceEEEecCCceEEEEEecCchh---------
Confidence 47788899999999976 467788899999999766544332 011599999999999988872110
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECC-------------------------CC
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG-------------------------SG 611 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~-------------------------tg 611 (1496)
.-+..+...||...|-++...++ +..++|||.|.+|++|+.. ++
T Consensus 182 --~~~~~~~~~GHk~~V~sVsv~~s---------gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 182 --KVKALKVCRGHKRSVDSVSVDSS---------GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred --hhhHHhHhcccccceeEEEecCC---------CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 11233334599999999999887 8999999999999999932 12
Q ss_pred ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCC
Q 000450 612 NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDH 691 (1496)
Q Consensus 612 ~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~ 691 (1496)
.++.++.+|+.+|.+|.|++. ..++|+|.|++|+.||+.++++..++.+. ....+|..+|..++|++||.|
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d~-------~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssd- 321 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSDA-------TVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSD- 321 (423)
T ss_pred CceEEecccccceeeEEEcCC-------CceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCC-
Confidence 366789999999999999874 58999999999999999999998877643 458999999999999999998
Q ss_pred CCCCCCCCEEEEEECCCCe---EEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccc
Q 000450 692 SRTSDAVDVLFIWDVKTGA---RERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1496)
Q Consensus 692 sg~~D~dg~V~VWDl~tg~---~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~ 766 (1496)
..+++||.+++. ....+.||+.-+-.+.+|+..... +++.+-|+++|.|+.+
T Consensus 322 -------r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~----------------~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 322 -------RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQ----------------LVSGSYDNTVKLWDVR 376 (423)
T ss_pred -------CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceE----------------EEEEecCCeEEEEEec
Confidence 999999999863 357899999977777777543333 3334449999999973
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.1e-19 Score=194.29 Aligned_cols=228 Identities=20% Similarity=0.232 Sum_probs=186.9
Q ss_pred eecccccCccccccccCCCCCC----CcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCC
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAG----DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGA 553 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~----~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~ 553 (1496)
+.+++-++.+.+|+..+++-.. +....|.-+...|.|+.|..+.- .+++|+.||.|+||+
T Consensus 228 LvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE----MlAsGsqDGkIKvWr------------ 291 (508)
T KOG0275|consen 228 LVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE----MLASGSQDGKIKVWR------------ 291 (508)
T ss_pred EeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH----HhhccCcCCcEEEEE------------
Confidence 5666778999999998876544 33445667789999998666665 899999999999943
Q ss_pred ccccCCcceEEEEe-cCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCC
Q 000450 554 SLKVNSHVSRQYFL-GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPP 632 (1496)
Q Consensus 554 ~~d~~s~~~~~~l~-gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd 632 (1496)
+.+|.|++.|. .|+..|+|+.|+.| +..++|+|.|.+|++.-+++|+++..|++|+..|+...|.++
T Consensus 292 ---i~tG~ClRrFdrAHtkGvt~l~FSrD---------~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d 359 (508)
T KOG0275|consen 292 ---IETGQCLRRFDRAHTKGVTCLSFSRD---------NSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD 359 (508)
T ss_pred ---EecchHHHHhhhhhccCeeEEEEccC---------cchhhcccccceEEEeccccchhHHHhcCccccccceEEcCC
Confidence 55788888885 89999999999997 788999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCC--------------------------------------------
Q 000450 633 QTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH-------------------------------------------- 668 (1496)
Q Consensus 633 ~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH-------------------------------------------- 668 (1496)
|+.+++++.||+|++|+.++.+|+.+|..-
T Consensus 360 ------G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSG 433 (508)
T KOG0275|consen 360 ------GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSG 433 (508)
T ss_pred ------CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccC
Confidence 999999999999999999887665554310
Q ss_pred ---CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCc
Q 000450 669 ---PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNT 745 (1496)
Q Consensus 669 ---~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~ 745 (1496)
.+.-.+.+.+|.|.++.+.+.| +.+|.+.+.+|++++++.-|...++...-.+.
T Consensus 434 kREgGdFi~~~lSpkGewiYcigED--------~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPH--------------- 490 (508)
T KOG0275|consen 434 KREGGDFINAILSPKGEWIYCIGED--------GVLYCFSVLSGKLERTLPVHEKDVIGLTHHPH--------------- 490 (508)
T ss_pred CccCCceEEEEecCCCcEEEEEccC--------cEEEEEEeecCceeeeeecccccccccccCcc---------------
Confidence 1122345779999999999998 99999999999999999999988887643321
Q ss_pred cccccceeeccCCcEEeec
Q 000450 746 SVSSLLLPIHEDGTFRQSQ 764 (1496)
Q Consensus 746 ~~s~~l~~~~~D~~ir~W~ 764 (1496)
.+.+-+.++|+.++.|.
T Consensus 491 --qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 491 --QNLLASYSEDGLLKLWK 507 (508)
T ss_pred --cchhhhhcccchhhhcC
Confidence 11233445688888884
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-17 Score=204.64 Aligned_cols=236 Identities=10% Similarity=0.067 Sum_probs=168.4
Q ss_pred ccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcce
Q 000450 483 CQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS 562 (1496)
Q Consensus 483 ~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~ 562 (1496)
..+.+++|+.... .....+.+|...|.++.+.+.. ++.+++|+.||.|+||... .+. . .......+
T Consensus 52 ~~gvI~L~~~~r~----~~v~~L~gH~~~V~~lafsP~~---~~lLASgS~DgtIrIWDi~--t~~----~-~~~~i~~p 117 (568)
T PTZ00420 52 LIGAIRLENQMRK----PPVIKLKGHTSSILDLQFNPCF---SEILASGSEDLTIRVWEIP--HND----E-SVKEIKDP 117 (568)
T ss_pred ceeEEEeeecCCC----ceEEEEcCCCCCEEEEEEcCCC---CCEEEEEeCCCeEEEEECC--CCC----c-cccccccc
Confidence 4567888987653 2345678999999999844421 1389999999999995433 110 0 00000134
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEE
Q 000450 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642 (1496)
Q Consensus 563 ~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l 642 (1496)
...+.+|...|.+++|+|+ ...+|++|+.|++|++||+++++.+..+. |...|.++.|+|+ |.+|
T Consensus 118 ~~~L~gH~~~V~sVaf~P~--------g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswspd------G~lL 182 (568)
T PTZ00420 118 QCILKGHKKKISIIDWNPM--------NYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIK------GNLL 182 (568)
T ss_pred eEEeecCCCcEEEEEECCC--------CCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCC------CCEE
Confidence 5678899999999999997 13467899999999999999999887775 5678999999999 8999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEecCCCCCcEE-----EEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC-CeEEEEEe
Q 000450 643 LSVGEDFSVALASLETLRVERMFPGHPNYPAK-----VVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLR 716 (1496)
Q Consensus 643 ~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~-----V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t-g~~~~~l~ 716 (1496)
++++.|+.|+|||+++++.+..+.+|.+.+.. ..|++++.+|++++.| . ..+++|+|||+++ ++.+..+.
T Consensus 183 at~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d--~--~~~R~VkLWDlr~~~~pl~~~~ 258 (568)
T PTZ00420 183 SGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFS--K--NNMREMKLWDLKNTTSALVTMS 258 (568)
T ss_pred EEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcC--C--CCccEEEEEECCCCCCceEEEE
Confidence 99999999999999999999999999876533 3456899999998876 1 1124899999985 56666554
Q ss_pred CCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccc
Q 000450 717 GTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1496)
Q Consensus 717 gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~ 766 (1496)
.+.+...+.-+.+ ..+|. .++....|+++|.|++.
T Consensus 259 ld~~~~~L~p~~D-----~~tg~----------l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 259 IDNASAPLIPHYD-----ESTGL----------IYLIGKGDGNCRYYQHS 293 (568)
T ss_pred ecCCccceEEeee-----CCCCC----------EEEEEECCCeEEEEEcc
Confidence 4443222211111 11111 12233459999999873
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-17 Score=178.05 Aligned_cols=206 Identities=16% Similarity=0.232 Sum_probs=171.7
Q ss_pred ccccccCCccEEEEEeeccccccCC---EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEE-ecCCccEEEEE
Q 000450 502 RDDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-LGHTGAVLCLA 577 (1496)
Q Consensus 502 ~~~~~~h~~~Vts~~~~s~~~f~P~---~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l-~gH~~~V~~La 577 (1496)
.+++.+|.+++..++ ++|. .|++++.|..|+| |+.-. ..+-.++..+ .+|+..|.+++
T Consensus 7 ~~~~~gh~~r~W~~a------whp~~g~ilAscg~Dk~vri--w~~~~----------~~s~~ck~vld~~hkrsVRsvA 68 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVA------WHPGKGVILASCGTDKAVRI--WSTSS----------GDSWTCKTVLDDGHKRSVRSVA 68 (312)
T ss_pred EEeecCCCCcEEEEE------eccCCceEEEeecCCceEEE--EecCC----------CCcEEEEEeccccchheeeeee
Confidence 456789999999998 6666 6999999999999 44210 1123455555 57999999999
Q ss_pred EecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC--ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEE
Q 000450 578 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG--NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 655 (1496)
Q Consensus 578 ~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg--~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWd 655 (1496)
|+|. +++|++||.|.++.||.-..+ +++.++.+|...|.+++|+++ |++||+++.|++|-+|.
T Consensus 69 wsp~---------g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s------G~~LATCSRDKSVWiWe 133 (312)
T KOG0645|consen 69 WSPH---------GRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS------GNYLATCSRDKSVWIWE 133 (312)
T ss_pred ecCC---------CcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC------CCEEEEeeCCCeEEEEE
Confidence 9997 899999999999999986643 688999999999999999999 99999999999999999
Q ss_pred CCC---CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC---CCeEEEEEeCCCCCceeeeeec
Q 000450 656 LET---LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK---TGARERVLRGTASHSMFDHFCK 729 (1496)
Q Consensus 656 l~~---~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~---tg~~~~~l~gh~a~vi~~~~~~ 729 (1496)
+.. .+|...+..|...|..|.|+|....|++++.| ++|++|.-. .-++..++.||...+....|.+
T Consensus 134 ~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYD--------nTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~ 205 (312)
T KOG0645|consen 134 IDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYD--------NTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN 205 (312)
T ss_pred ecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccC--------CeEEEEeecCCCCeeEEEEecCccceEEEEEecC
Confidence 863 56888999999999999999999999999998 999999876 3478999999998777776662
Q ss_pred ccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 730 GISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 730 ~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
+|+ .++..+.|+++++|.+
T Consensus 206 ------------~G~-----rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 206 ------------IGS-----RLVSCSDDGTVSIWRL 224 (312)
T ss_pred ------------CCc-----eEEEecCCcceEeeee
Confidence 132 3456667999999974
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-18 Score=200.24 Aligned_cols=225 Identities=17% Similarity=0.169 Sum_probs=183.2
Q ss_pred ecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccC
Q 000450 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1496)
Q Consensus 479 ~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~ 558 (1496)
...+-++.+++|+.-+. +.+.+++.+|...|.++++..+.. .+.+++.|+.+++ ||++
T Consensus 231 LS~gmD~~vklW~vy~~---~~~lrtf~gH~k~Vrd~~~s~~g~----~fLS~sfD~~lKl---------------wDtE 288 (503)
T KOG0282|consen 231 LSGGMDGLVKLWNVYDD---RRCLRTFKGHRKPVRDASFNNCGT----SFLSASFDRFLKL---------------WDTE 288 (503)
T ss_pred EecCCCceEEEEEEecC---cceehhhhcchhhhhhhhccccCC----eeeeeecceeeee---------------eccc
Confidence 34455678999998763 578899999999999999777776 8999999999998 5688
Q ss_pred CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCC
Q 000450 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1496)
Q Consensus 559 s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~ 638 (1496)
+|++...+.. ...++|+.|+|+ +.+.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-|+
T Consensus 289 TG~~~~~f~~-~~~~~cvkf~pd--------~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~------ 353 (503)
T KOG0282|consen 289 TGQVLSRFHL-DKVPTCVKFHPD--------NQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDE------ 353 (503)
T ss_pred cceEEEEEec-CCCceeeecCCC--------CCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccC------
Confidence 8888877653 235789999998 2589999999999999999999999999999999999999998
Q ss_pred CCEEEEEeCCCcEEEEECCCCc--------------------------------E--------------EEEecCCC--C
Q 000450 639 SDCFLSVGEDFSVALASLETLR--------------------------------V--------------ERMFPGHP--N 670 (1496)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~~~~--------------------------------~--------------l~~~~gH~--~ 670 (1496)
+..|++.+.|+++++|+.+..- . ...|.||. +
T Consensus 354 g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG 433 (503)
T KOG0282|consen 354 GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG 433 (503)
T ss_pred CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccC
Confidence 8999999999999999987531 0 11233563 3
Q ss_pred CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCcccccc
Q 000450 671 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSL 750 (1496)
Q Consensus 671 ~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~ 750 (1496)
.-..|.|||||++|++|..| |.+++||-+|-+++..+..|....+.+.+.+... +.
T Consensus 434 ys~~v~fSpDG~~l~SGdsd--------G~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~----------------Sk 489 (503)
T KOG0282|consen 434 YSCQVDFSPDGRTLCSGDSD--------GKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEP----------------SK 489 (503)
T ss_pred ceeeEEEcCCCCeEEeecCC--------ccEEEeechhhhhhhccccCCcceEEEEecCCCc----------------ce
Confidence 55778999999999999888 9999999999999999999988888877775211 11
Q ss_pred ceeeccCCcEEeec
Q 000450 751 LLPIHEDGTFRQSQ 764 (1496)
Q Consensus 751 l~~~~~D~~ir~W~ 764 (1496)
+..+.-||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 22223388999985
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.8e-18 Score=180.29 Aligned_cols=189 Identities=18% Similarity=0.196 Sum_probs=156.9
Q ss_pred CEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEE
Q 000450 526 YAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1496)
Q Consensus 526 ~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~l 605 (1496)
+.+++++.||++++ |++ .....+++.++.|...|.++.|++. .++.++++|.|++|++
T Consensus 74 ~~~~~a~GDGSLrl--~d~------------~~~s~Pi~~~kEH~~EV~Svdwn~~--------~r~~~ltsSWD~TiKL 131 (311)
T KOG0277|consen 74 NQVIAASGDGSLRL--FDL------------TMPSKPIHKFKEHKREVYSVDWNTV--------RRRIFLTSSWDGTIKL 131 (311)
T ss_pred ceEEEEecCceEEE--ecc------------CCCCcchhHHHhhhhheEEeccccc--------cceeEEeeccCCceEe
Confidence 47888999999999 552 1223578899999999999999886 3778888899999999
Q ss_pred EECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcC-CCCEE
Q 000450 606 WDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYI 684 (1496)
Q Consensus 606 WDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~sp-dg~~L 684 (1496)
||...++.+++|.+|..-|.+..|+|.. +++|+++|.|+++++||++.......++.|...+.++.|+. +...|
T Consensus 132 W~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~-----~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl 206 (311)
T KOG0277|consen 132 WDPNRPNSVQTFNGHNSCIYQAAFSPHI-----PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVL 206 (311)
T ss_pred ecCCCCcceEeecCCccEEEEEecCCCC-----CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEE
Confidence 9999999999999999999999999985 88999999999999999987555556999999999999986 56678
Q ss_pred EEEEcCCCCCCCCCCEEEEEECCCC-eEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEee
Q 000450 685 ACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQS 763 (1496)
Q Consensus 685 ~tgs~D~sg~~D~dg~V~VWDl~tg-~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W 763 (1496)
+||+.| +.||+||++.- ..+.++.||.-.+-.+.|.+.- .+...+.+. |-+.|+|
T Consensus 207 ~Tg~vd--------~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~-----------~~lLaSasY-----DmT~riw 262 (311)
T KOG0277|consen 207 ATGGVD--------NLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHH-----------ASLLASASY-----DMTVRIW 262 (311)
T ss_pred EecCCC--------ceEEEEehhhccccceeecCCceEEEEEecCcch-----------hhHhhhccc-----cceEEec
Confidence 888888 99999999874 5688999999877777665321 122333334 9999999
Q ss_pred cc
Q 000450 764 QI 765 (1496)
Q Consensus 764 ~l 765 (1496)
+.
T Consensus 263 ~~ 264 (311)
T KOG0277|consen 263 DP 264 (311)
T ss_pred cc
Confidence 86
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-19 Score=195.33 Aligned_cols=166 Identities=23% Similarity=0.372 Sum_probs=142.9
Q ss_pred ccCC--EEEEEEcCCcEEEEEecccccCCCCCCcc-ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeC
Q 000450 523 YAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASL-KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM 599 (1496)
Q Consensus 523 f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~-d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~ 599 (1496)
|+|+ ++++|+-||-|.||++. .+ +.. |.. -+....+.-|..+|.|+.|+.| .+.|++|+.
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~--~G-----KlrKDLk-YQAqd~fMMmd~aVlci~FSRD---------sEMlAsGsq 283 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYT--TG-----KLRKDLK-YQAQDNFMMMDDAVLCISFSRD---------SEMLASGSQ 283 (508)
T ss_pred eCCCCceEeeccccceeeeehhc--cc-----hhhhhhh-hhhhcceeecccceEEEeeccc---------HHHhhccCc
Confidence 6665 99999999999995543 11 110 000 0112234567899999999997 799999999
Q ss_pred CCcEEEEECCCCceEEEEc-ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 000450 600 DCSIRIWDLGSGNLITVMH-HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWD 678 (1496)
Q Consensus 600 DgtV~lWDl~tg~~l~~~~-~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~s 678 (1496)
||.|++|.+.+|.|++.|. .|+..|+++.|+.| +..++|++-|.++++.-++.|+++..|.||.+.|+.+.|+
T Consensus 284 DGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD------~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft 357 (508)
T KOG0275|consen 284 DGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD------NSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT 357 (508)
T ss_pred CCcEEEEEEecchHHHHhhhhhccCeeEEEEccC------cchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence 9999999999999999997 89999999999999 8899999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCC
Q 000450 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1496)
Q Consensus 679 pdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~ 719 (1496)
+||.++++++.| |+|+||+.+|++++.++..-.
T Consensus 358 ~dG~~iisaSsD--------gtvkvW~~KtteC~~Tfk~~~ 390 (508)
T KOG0275|consen 358 DDGHHIISASSD--------GTVKVWHGKTTECLSTFKPLG 390 (508)
T ss_pred CCCCeEEEecCC--------ccEEEecCcchhhhhhccCCC
Confidence 999999999999 999999999999998876433
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-17 Score=203.06 Aligned_cols=172 Identities=16% Similarity=0.230 Sum_probs=140.5
Q ss_pred EEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC-------ceEEEEcccCCCEEEEEECCCCCCC
Q 000450 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-------NLITVMHHHVAPVRQIILSPPQTEH 636 (1496)
Q Consensus 564 ~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg-------~~l~~~~~H~~~V~~l~~sPd~~~~ 636 (1496)
..+.||++.|++++|+|. ++++|++|+.|++|++||+.++ +++..+.+|...|.++.|+|+.
T Consensus 69 ~~l~GH~~~V~~v~fsP~--------d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~--- 137 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPF--------DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA--- 137 (493)
T ss_pred ceEeCCCCCEEEEEEcCC--------CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC---
Confidence 347899999999999993 1789999999999999999765 3577899999999999999983
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 637 PWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 637 ~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
+++|++++.|++|+|||+++++.+..+.+|...|.+++|+|++.+|++++.| ++|+|||+++++.+..+.
T Consensus 138 --~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D--------g~IrIwD~rsg~~v~tl~ 207 (493)
T PTZ00421 138 --MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD--------KKLNIIDPRDGTIVSSVE 207 (493)
T ss_pred --CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC--------CEEEEEECCCCcEEEEEe
Confidence 4699999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred CCCCCce-eeeeecccccccccceEEcCCccccccceeeccCCcEEeecccccc
Q 000450 717 GTASHSM-FDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1496)
Q Consensus 717 gh~a~vi-~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e 769 (1496)
+|..... ...+++. .+.++.... .-..|+++++|+++...
T Consensus 208 ~H~~~~~~~~~w~~~------~~~ivt~G~-------s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 208 AHASAKSQRCLWAKR------KDLIITLGC-------SKSQQRQIMLWDTRKMA 248 (493)
T ss_pred cCCCCcceEEEEcCC------CCeEEEEec-------CCCCCCeEEEEeCCCCC
Confidence 9986433 2223311 111111100 11348899999986543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-16 Score=180.40 Aligned_cols=222 Identities=22% Similarity=0.269 Sum_probs=179.6
Q ss_pred cccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCC
Q 000450 480 LTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559 (1496)
Q Consensus 480 ~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s 559 (1496)
+...++.+.+|+.... +....+..|...+.++.+.+... .+++++.||.+.+ |+ ..+
T Consensus 68 ~~~~~~~i~i~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~i~~--~~-------------~~~ 124 (289)
T cd00200 68 SGSSDKTIRLWDLETG----ECVRTLTGHTSYVSSVAFSPDGR----ILSSSSRDKTIKV--WD-------------VET 124 (289)
T ss_pred EEcCCCeEEEEEcCcc----cceEEEeccCCcEEEEEEcCCCC----EEEEecCCCeEEE--EE-------------CCC
Confidence 3344677888988764 33445667888899988555432 6666666999999 33 334
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCC
Q 000450 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1496)
Q Consensus 560 ~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g 639 (1496)
++....+.+|.+.|.++.|+|+ +.++++++.|+.|++||+.+++.+..+..|...|.++.|+|+ +
T Consensus 125 ~~~~~~~~~~~~~i~~~~~~~~---------~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~------~ 189 (289)
T cd00200 125 GKCLTTLRGHTDWVNSVAFSPD---------GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD------G 189 (289)
T ss_pred cEEEEEeccCCCcEEEEEEcCc---------CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCC------c
Confidence 4667778889999999999996 788998888999999999999999999999999999999998 7
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCC
Q 000450 640 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1496)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~ 719 (1496)
+.+++++.|+.|++||+++++.+..+..|...+.++.|+|++.++++++.| |.|++||+.+++....+.+|.
T Consensus 190 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~i~i~~~~~~~~~~~~~~~~ 261 (289)
T cd00200 190 EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED--------GTIRVWDLRTGECVQTLSGHT 261 (289)
T ss_pred CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCC--------CcEEEEEcCCceeEEEccccC
Confidence 889999999999999999999999998899999999999998888887767 999999999999999999988
Q ss_pred CCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeec
Q 000450 720 SHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1496)
Q Consensus 720 a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~ 764 (1496)
..+....+.+. + ..++....|+.+++|+
T Consensus 262 ~~i~~~~~~~~------------~-----~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 262 NSVTSLAWSPD------------G-----KRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEECCC------------C-----CEEEEecCCCeEEecC
Confidence 77666655421 1 1234445588899884
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.3e-17 Score=202.44 Aligned_cols=141 Identities=20% Similarity=0.286 Sum_probs=124.5
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc--------eEEEEcccCCCEEEEEECC
Q 000450 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN--------LITVMHHHVAPVRQIILSP 631 (1496)
Q Consensus 560 ~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~--------~l~~~~~H~~~V~~l~~sP 631 (1496)
..++..+.+|.+.|.+++|+|+ .+.+|+||+.|++|++||+.++. ++..+.+|...|.++.|+|
T Consensus 64 ~~~v~~L~gH~~~V~~lafsP~--------~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P 135 (568)
T PTZ00420 64 KPPVIKLKGHTSSILDLQFNPC--------FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP 135 (568)
T ss_pred CceEEEEcCCCCCEEEEEEcCC--------CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC
Confidence 3567889999999999999996 26899999999999999998642 3457889999999999999
Q ss_pred CCCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 632 PQTEHPWSD-CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 632 d~~~~~~g~-~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
+ +. ++++++.|++|++||+++++.+..+. |...|.+++|+|+|.+|+++|.| +.|+|||+++++
T Consensus 136 ~------g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D--------~~IrIwD~Rsg~ 200 (568)
T PTZ00420 136 M------NYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVG--------KHMHIIDPRKQE 200 (568)
T ss_pred C------CCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecC--------CEEEEEECCCCc
Confidence 8 55 56899999999999999999887776 66789999999999999999998 999999999999
Q ss_pred EEEEEeCCCCCce
Q 000450 711 RERVLRGTASHSM 723 (1496)
Q Consensus 711 ~~~~l~gh~a~vi 723 (1496)
.+..+.+|.+...
T Consensus 201 ~i~tl~gH~g~~~ 213 (568)
T PTZ00420 201 IASSFHIHDGGKN 213 (568)
T ss_pred EEEEEecccCCce
Confidence 9999999997543
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-16 Score=171.79 Aligned_cols=189 Identities=17% Similarity=0.214 Sum_probs=157.9
Q ss_pred eecccccCccccccccCCCCCCCccccc-ccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDF-VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~-~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
+++.+.+..+++|+...+.. -.+...+ .+|+..|+++++.+... .|++|+.|.++.| |...
T Consensus 30 lAscg~Dk~vriw~~~~~~s-~~ck~vld~~hkrsVRsvAwsp~g~----~La~aSFD~t~~I--w~k~----------- 91 (312)
T KOG0645|consen 30 LASCGTDKAVRIWSTSSGDS-WTCKTVLDDGHKRSVRSVAWSPHGR----YLASASFDATVVI--WKKE----------- 91 (312)
T ss_pred EEeecCCceEEEEecCCCCc-EEEEEeccccchheeeeeeecCCCc----EEEEeeccceEEE--eecC-----------
Confidence 56666778889998774211 1222222 57999999999666655 9999999999999 5421
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC---ceEEEEcccCCCEEEEEECCCC
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQ 633 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg---~~l~~~~~H~~~V~~l~~sPd~ 633 (1496)
-...+++.++.||...|.|++|+++ |.+||+++.|+.|-+|.+..+ +++..+..|+..|..+.|+|.
T Consensus 92 ~~efecv~~lEGHEnEVK~Vaws~s---------G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt- 161 (312)
T KOG0645|consen 92 DGEFECVATLEGHENEVKCVAWSAS---------GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT- 161 (312)
T ss_pred CCceeEEeeeeccccceeEEEEcCC---------CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC-
Confidence 1234788999999999999999997 999999999999999999754 478999999999999999997
Q ss_pred CCCCCCCEEEEEeCCCcEEEEECC---CCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 634 TEHPWSDCFLSVGEDFSVALASLE---TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 634 ~~~~~g~~l~Sgs~DgsV~lWdl~---~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
..+|+|+|.|.+|++|.-. +..|.+++.+|.+.|++++|+|.|..|++++.| ++|+||-..
T Consensus 162 -----~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD--------~tv~Iw~~~ 225 (312)
T KOG0645|consen 162 -----EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD--------GTVSIWRLY 225 (312)
T ss_pred -----cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCC--------cceEeeeec
Confidence 6799999999999999865 457899999999999999999999999999988 999999844
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.4e-16 Score=168.05 Aligned_cols=128 Identities=22% Similarity=0.312 Sum_probs=116.9
Q ss_pred EcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC
Q 000450 532 FFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG 611 (1496)
Q Consensus 532 s~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg 611 (1496)
...|.|.|..|. +.++++.++.|.....|+.|.|+ |++|++|+.|-.|.+||+...
T Consensus 166 ~GlG~v~ILsyp---------------sLkpv~si~AH~snCicI~f~p~---------GryfA~GsADAlvSLWD~~EL 221 (313)
T KOG1407|consen 166 NGLGCVEILSYP---------------SLKPVQSIKAHPSNCICIEFDPD---------GRYFATGSADALVSLWDVDEL 221 (313)
T ss_pred cCCceEEEEecc---------------ccccccccccCCcceEEEEECCC---------CceEeeccccceeeccChhHh
Confidence 446888886665 33678899999999999999998 899999999999999999998
Q ss_pred ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcC
Q 000450 612 NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRD 690 (1496)
Q Consensus 612 ~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D 690 (1496)
-|++.|.-+.-||+.+.|+.+ |++|+|+|+|+.|-|=++++|..+..++ +.++...|+|+|...+|+-+|.|
T Consensus 222 iC~R~isRldwpVRTlSFS~d------g~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 222 ICERCISRLDWPVRTLSFSHD------GRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred hhheeeccccCceEEEEeccC------cceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 899999999999999999999 9999999999999999999999998886 77889999999999999999988
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.5e-16 Score=205.71 Aligned_cols=191 Identities=19% Similarity=0.173 Sum_probs=158.4
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeec-cccccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVIS-ESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s-~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~ 555 (1496)
.++++..++.+++||.... +....+.+|...|+++.+.+ +. +.+++|+.||.|++| +
T Consensus 547 ~las~~~Dg~v~lWd~~~~----~~~~~~~~H~~~V~~l~~~p~~~----~~L~Sgs~Dg~v~iW--d------------ 604 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARS----QLVTEMKEHEKRVWSIDYSSADP----TLLASGSDDGSVKLW--S------------ 604 (793)
T ss_pred EEEEEeCCCeEEEEECCCC----eEEEEecCCCCCEEEEEEcCCCC----CEEEEEcCCCEEEEE--E------------
Confidence 4677888999999998753 45566789999999998443 22 389999999999993 3
Q ss_pred ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc-eEEEEcccCCCEEEEEECCCCC
Q 000450 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSPPQT 634 (1496)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~-~l~~~~~H~~~V~~l~~sPd~~ 634 (1496)
..++.....+..| ..|.++.|++. ++.+|++|+.|++|++||+++++ .+..+.+|...|.++.|. +
T Consensus 605 -~~~~~~~~~~~~~-~~v~~v~~~~~--------~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~-- 671 (793)
T PLN00181 605 -INQGVSIGTIKTK-ANICCVQFPSE--------SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-D-- 671 (793)
T ss_pred -CCCCcEEEEEecC-CCeEEEEEeCC--------CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-C--
Confidence 3344566667654 67999999664 28899999999999999998776 577888999999999997 4
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCC------CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 635 EHPWSDCFLSVGEDFSVALASLET------LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl~~------~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
+.++++++.|++|++||++. .+++..+.+|...+..++|+|++.+|++|+.| ++|++|+...
T Consensus 672 ----~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D--------~~v~iw~~~~ 739 (793)
T PLN00181 672 ----SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSET--------NEVFVYHKAF 739 (793)
T ss_pred ----CCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCC--------CEEEEEECCC
Confidence 67999999999999999974 36788999999999999999999999999998 9999999877
Q ss_pred CeEEEE
Q 000450 709 GARERV 714 (1496)
Q Consensus 709 g~~~~~ 714 (1496)
+..+..
T Consensus 740 ~~~~~s 745 (793)
T PLN00181 740 PMPVLS 745 (793)
T ss_pred CCceEE
Confidence 655433
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.4e-16 Score=180.68 Aligned_cols=198 Identities=16% Similarity=0.213 Sum_probs=143.8
Q ss_pred ccccCccccccccCCCC-CCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCC
Q 000450 481 TFCQDTVPRSEHVDSRQ-AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559 (1496)
Q Consensus 481 s~~~~~i~lWd~~~~~~-~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s 559 (1496)
....+.|-++++..+-. .....-.+ -+...|+.+.+.+ |.+.+|+.|++||.|++|+.. .++ .....
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdP---FD~~rLAVa~ddg~i~lWr~~--a~g------l~e~~ 666 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDP---FDDERLAVATDDGQINLWRLT--ANG------LPENE 666 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCC---CChHHeeecccCceEEEEEec--cCC------CCccc
Confidence 34456777777765421 11111111 1233455554222 444599999999999996554 111 11123
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCC
Q 000450 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1496)
Q Consensus 560 ~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g 639 (1496)
.++...+.+|...|++|.|||- -...|++++.|.+|++||+.+++....+.+|++.|..++|+|+ |
T Consensus 667 ~tPe~~lt~h~eKI~slRfHPL--------AadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd------G 732 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITSLRFHPL--------AADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPD------G 732 (1012)
T ss_pred CCcceeeecccceEEEEEecch--------hhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCC------C
Confidence 4567789999999999999996 2689999999999999999999999999999999999999999 9
Q ss_pred CEEEEEeCCCcEEEEECCCCcE-EEEecCCC-CCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 640 DCFLSVGEDFSVALASLETLRV-ERMFPGHP-NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~~~~~-l~~~~gH~-~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
+.++++|.|++|++|..+.++. ++.-+|-. ..--.|.|--||+++++.+.| .-++..|.+||.++
T Consensus 733 r~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd----k~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 733 RRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD----KSSERQVQMYDAQT 799 (1012)
T ss_pred cceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc----ccchhhhhhhhhhh
Confidence 9999999999999999887643 34333322 233568899999999998887 22236788998866
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-16 Score=179.90 Aligned_cols=209 Identities=15% Similarity=0.182 Sum_probs=175.7
Q ss_pred cccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEec
Q 000450 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1496)
Q Consensus 501 ~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~sp 580 (1496)
...+|..|...|.++...|... .+++|+.|..-.+ |+ ..++.....+.||+..|+|+.|+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~----l~aTGGgDD~Afl--W~-------------~~~ge~~~eltgHKDSVt~~~Fsh 116 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNN----LVATGGGDDLAFL--WD-------------ISTGEFAGELTGHKDSVTCCSFSH 116 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCc----eEEecCCCceEEE--EE-------------ccCCcceeEecCCCCceEEEEEcc
Confidence 3467899999999998655443 8899999988888 33 456677788999999999999998
Q ss_pred CCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCc
Q 000450 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1496)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~ 660 (1496)
+ +.+|+||+.+|.|+||+..+|.....+......|.-+.|+|. +++|+.|+.||++.+|.+.++.
T Consensus 117 d---------gtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~------a~illAG~~DGsvWmw~ip~~~ 181 (399)
T KOG0296|consen 117 D---------GTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPR------AHILLAGSTDGSVWMWQIPSQA 181 (399)
T ss_pred C---------ceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEeccc------ccEEEeecCCCcEEEEECCCcc
Confidence 7 899999999999999999999999888877788999999997 8999999999999999999988
Q ss_pred EEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceE
Q 000450 661 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSV 740 (1496)
Q Consensus 661 ~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v 740 (1496)
..+.+.||..++++=.|.|||+.++++..| |+|++||.+||+.+..+.+.... ..-| +..+..+..+
T Consensus 182 ~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d--------gti~~Wn~ktg~p~~~~~~~e~~---~~~~--~~~~~~~~~~ 248 (399)
T KOG0296|consen 182 LCKVMSGHNSPCTCGEFIPDGKRILTGYDD--------GTIIVWNPKTGQPLHKITQAEGL---ELPC--ISLNLAGSTL 248 (399)
T ss_pred eeeEecCCCCCcccccccCCCceEEEEecC--------ceEEEEecCCCceeEEecccccC---cCCc--ccccccccee
Confidence 889999999999999999999999999998 99999999999999988754421 1122 3445556666
Q ss_pred EcCCccccccceeecc
Q 000450 741 LNGNTSVSSLLLPIHE 756 (1496)
Q Consensus 741 ~~g~~~~s~~l~~~~~ 756 (1496)
..|+..+...+++...
T Consensus 249 ~~g~~e~~~~~~~~~s 264 (399)
T KOG0296|consen 249 TKGNSEGVACGVNNGS 264 (399)
T ss_pred EeccCCccEEEEcccc
Confidence 6777766666655543
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-17 Score=177.62 Aligned_cols=201 Identities=18% Similarity=0.156 Sum_probs=160.2
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
+.+...+|.+++||+..+ ...+..+++|...|.++.+..... ..+++++-||+|++ |+ .
T Consensus 76 ~~~a~GDGSLrl~d~~~~---s~Pi~~~kEH~~EV~Svdwn~~~r---~~~ltsSWD~TiKL--W~-------------~ 134 (311)
T KOG0277|consen 76 VIAASGDGSLRLFDLTMP---SKPIHKFKEHKREVYSVDWNTVRR---RIFLTSSWDGTIKL--WD-------------P 134 (311)
T ss_pred EEEEecCceEEEeccCCC---CcchhHHHhhhhheEEeccccccc---eeEEeeccCCceEe--ec-------------C
Confidence 334445678999995433 245677899999999987333222 26788899999999 43 3
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCC
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~ 637 (1496)
..+..++++.||...|....|+|.+ +++++++|.|+++++||++.......+..|...|.++.|+.-.
T Consensus 135 ~r~~Sv~Tf~gh~~~Iy~a~~sp~~--------~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~---- 202 (311)
T KOG0277|consen 135 NRPNSVQTFNGHNSCIYQAAFSPHI--------PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYN---- 202 (311)
T ss_pred CCCcceEeecCCccEEEEEecCCCC--------CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccC----
Confidence 3457789999999999999999973 8999999999999999998654445589999999999998763
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc-EEEEecCCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCCCe-EEEE
Q 000450 638 WSDCFLSVGEDFSVALASLETLR-VERMFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTGA-RERV 714 (1496)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~~~~-~l~~~~gH~~~V~~V~~spdg~-~L~tgs~D~sg~~D~dg~V~VWDl~tg~-~~~~ 714 (1496)
.+.+++|+.|+.|+.||+++.+ ++..+.+|.-.|..|+|||... .|++++.| -+++|||.+.+. ++.+
T Consensus 203 -~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD--------mT~riw~~~~~ds~~e~ 273 (311)
T KOG0277|consen 203 -HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYD--------MTVRIWDPERQDSAIET 273 (311)
T ss_pred -CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhcccc--------ceEEecccccchhhhhh
Confidence 6799999999999999999865 5788899999999999999754 67777777 899999998654 3455
Q ss_pred EeCCCC
Q 000450 715 LRGTAS 720 (1496)
Q Consensus 715 l~gh~a 720 (1496)
+.-|+.
T Consensus 274 ~~~HtE 279 (311)
T KOG0277|consen 274 VDHHTE 279 (311)
T ss_pred hhccce
Confidence 555553
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.6e-17 Score=198.26 Aligned_cols=216 Identities=19% Similarity=0.136 Sum_probs=165.5
Q ss_pred cc-cCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecc-----cccCC-----------------------------
Q 000450 505 FV-HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL-----FERHN----------------------------- 549 (1496)
Q Consensus 505 ~~-~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~-----l~~~d----------------------------- 549 (1496)
+. .|.+.|+++.|..++. +||+|+.||.|+||.... +..++
T Consensus 262 ~~~ah~gaIw~mKFS~DGK----yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGK----YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred cccccCCcEEEEEeCCCCc----eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 44 8999999999666666 999999999999964321 00000
Q ss_pred -------CCC-Cccc---cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEc
Q 000450 550 -------SPG-ASLK---VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH 618 (1496)
Q Consensus 550 -------~~~-~~~d---~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~ 618 (1496)
... ...+ .-..++.+.+.||.+.|..|.|+- +++|+|+|+|.|||+|++...+|+++|
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK----------n~fLLSSSMDKTVRLWh~~~~~CL~~F- 406 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK----------NNFLLSSSMDKTVRLWHPGRKECLKVF- 406 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheeccccc----------CCeeEeccccccEEeecCCCcceeeEE-
Confidence 000 0000 012356677899999999999996 699999999999999999999999999
Q ss_pred ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCC
Q 000450 619 HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAV 698 (1496)
Q Consensus 619 ~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~d 698 (1496)
.|...|+||+|+|.. .++|+|||-|+.||||++...+.+.-...+ .-|++++|+|||++.++|+.+
T Consensus 407 ~HndfVTcVaFnPvD-----DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~-------- 472 (712)
T KOG0283|consen 407 SHNDFVTCVAFNPVD-----DRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFN-------- 472 (712)
T ss_pred ecCCeeEEEEecccC-----CCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEec--------
Confidence 589999999999974 889999999999999999988877655544 679999999999999999999
Q ss_pred CEEEEEECCCCeEEEEE--eCC------CCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 699 DVLFIWDVKTGARERVL--RGT------ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 699 g~V~VWDl~tg~~~~~l--~gh------~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
|.+++|+++.-++.... .-| ..+++..+|++. +. ..++-.+.|.+||+.++
T Consensus 473 G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~-------------~~---~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 473 GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPG-------------DP---DEVLVTSNDSRIRIYDG 531 (712)
T ss_pred cEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCC-------------CC---CeEEEecCCCceEEEec
Confidence 99999999876654332 222 114666666631 11 13455667999999887
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=182.86 Aligned_cols=240 Identities=17% Similarity=0.143 Sum_probs=175.4
Q ss_pred eecccccCccccccccCCCCCC------CcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCC
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAG------DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSP 551 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~------~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~ 551 (1496)
+++....+.+.+||........ .....+.+|.+.=..+.+.. +.+-.+++|+.|+.|.+|..+ ..+
T Consensus 140 VAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~---~~~g~Lls~~~d~~i~lwdi~--~~~--- 211 (422)
T KOG0264|consen 140 VATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNR---QQEGTLLSGSDDHTICLWDIN--AES--- 211 (422)
T ss_pred EEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccc---ccceeEeeccCCCcEEEEecc--ccc---
Confidence 3344455667777765432211 11225678877545544222 112389999999999994433 111
Q ss_pred CCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECC--CCceEEEEcccCCCEEEEEE
Q 000450 552 GASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG--SGNLITVMHHHVAPVRQIIL 629 (1496)
Q Consensus 552 ~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~--tg~~l~~~~~H~~~V~~l~~ 629 (1496)
-+...-.+...+.+|...|..++|++.+ ..++++.+.|+.+.|||++ +.++.+...+|.++|.+++|
T Consensus 212 ---~~~~~~~p~~~~~~h~~~VeDV~~h~~h--------~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 212 ---KEDKVVDPKTIFSGHEDVVEDVAWHPLH--------EDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred ---cCCccccceEEeecCCcceehhhccccc--------hhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 0111234567789999999999999974 7899999999999999999 56677888999999999999
Q ss_pred CCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 630 SPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 630 sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~-~~l~~~~gH~~~V~~V~~spdg~-~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
+|-+ +..||+||.|++|+|||+|+. ++++++.+|...|.+|.|+|... .|++++.| +.+.|||+.
T Consensus 281 np~~-----~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D--------~rl~vWDls 347 (422)
T KOG0264|consen 281 NPFN-----EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD--------RRLNVWDLS 347 (422)
T ss_pred CCCC-----CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccC--------CcEEEEecc
Confidence 9985 779999999999999999985 46899999999999999999765 66667776 999999995
Q ss_pred C-C-------------eEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 708 T-G-------------ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 708 t-g-------------~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
. | +++..-.||++.+.-..+++ .-.=.+.+++.|+.+.+|+.
T Consensus 348 ~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp----------------~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 348 RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNP----------------NEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred ccccccChhhhccCCcceeEEecCcccccccccCCC----------------CCCeEEEEecCCceEEEeec
Confidence 4 2 23456678888766555553 12223456778999999985
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9e-18 Score=200.74 Aligned_cols=212 Identities=16% Similarity=0.244 Sum_probs=176.3
Q ss_pred cccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000450 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1496)
Q Consensus 505 ~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~ 584 (1496)
+..|...|.+........ .+++|+.|-.+-+ |. .....++..|++|..+|.||.|+++
T Consensus 24 ~~~hsaav~~lk~~~s~r----~~~~Gg~~~k~~L--~~-------------i~kp~~i~S~~~hespIeSl~f~~~--- 81 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSR----SLVTGGEDEKVNL--WA-------------IGKPNAITSLTGHESPIESLTFDTS--- 81 (825)
T ss_pred hhhhhhhhceeeeeccce----eeccCCCceeecc--cc-------------ccCCchhheeeccCCcceeeecCcc---
Confidence 566777777776544444 6778877766655 32 2223344568999999999999986
Q ss_pred cccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 000450 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 664 (1496)
Q Consensus 585 ~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~ 664 (1496)
..+|+.|+.||+|++||++.++.++++.+|...+.+|.|+|- +.++++|+.|..+++||.+...|.+.
T Consensus 82 ------E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~------~~~~a~gStdtd~~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 82 ------ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPY------GEFFASGSTDTDLKIWDIRKKGCSHT 149 (825)
T ss_pred ------hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccc------eEEeccccccccceehhhhccCceee
Confidence 789999999999999999999999999999999999999998 88999999999999999999999999
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCC
Q 000450 665 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGN 744 (1496)
Q Consensus 665 ~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~ 744 (1496)
+.+|...|..+.|+|+|++++.++.| .+++|||...|+....|.+|...+....|.+.-..
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed--------~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~L----------- 210 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWVASGGED--------NTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVL----------- 210 (825)
T ss_pred ecCCcceeEEEeecCCCceeeccCCc--------ceeeeecccccccccccccccccccccccCchhhh-----------
Confidence 99999999999999999999999988 99999999999999999999998888766642111
Q ss_pred ccccccceeeccCCcEEeecccccccccccc
Q 000450 745 TSVSSLLLPIHEDGTFRQSQIQNDERGVAFS 775 (1496)
Q Consensus 745 ~~~s~~l~~~~~D~~ir~W~l~~~e~~~~~~ 775 (1496)
.. +-..|.++|.|+++.++-..+.+
T Consensus 211 -la-----~Gs~d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 211 -LA-----PGSSDRTVRFWDLETFEVISSGK 235 (825)
T ss_pred -hc-----cCCCCceeeeeccceeEEeeccC
Confidence 11 22339999999998887655443
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.6e-16 Score=194.22 Aligned_cols=236 Identities=16% Similarity=0.145 Sum_probs=186.9
Q ss_pred cccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccC---C-CCCCccccCCcceEEEEecCCccEEEE
Q 000450 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH---N-SPGASLKVNSHVSRQYFLGHTGAVLCL 576 (1496)
Q Consensus 501 ~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~---d-~~~~~~d~~s~~~~~~l~gH~~~V~~L 576 (1496)
...+...|.+.|+|+.+.++.. ++++|++|+-|.||.... .+. . ..+...+.+.-+++..+.||.+.|..+
T Consensus 61 ~l~~m~~h~~sv~CVR~S~dG~----~lAsGSDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv 135 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSPDGS----YLASGSDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDV 135 (942)
T ss_pred hheeeccccCceeEEEECCCCC----eEeeccCcceEEEeeecc-cCCcccccccccccccceeeEEEEEecCCCcccee
Confidence 4455688999999999555555 999999999999976653 111 1 123334556667889999999999999
Q ss_pred EEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEEC
Q 000450 577 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1496)
Q Consensus 577 a~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl 656 (1496)
.|+|+ +.+|+|+|.|++|.+||..+++++.++.+|.+.|-.+.|.|- |++|||-+.|++|++|++
T Consensus 136 ~Wsp~---------~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~------Gky~ASqsdDrtikvwrt 200 (942)
T KOG0973|consen 136 NWSPD---------DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPI------GKYFASQSDDRTLKVWRT 200 (942)
T ss_pred ccCCC---------ccEEEEecccceEEEEccccceeeeeeecccccccceEECCc------cCeeeeecCCceEEEEEc
Confidence 99997 899999999999999999999999999999999999999998 999999999999999998
Q ss_pred CCCcEEEEecCCCC------CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecc
Q 000450 657 ETLRVERMFPGHPN------YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKG 730 (1496)
Q Consensus 657 ~~~~~l~~~~gH~~------~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~ 730 (1496)
.+..+.+.+.++-. ....+.|||||.||++...- ..+..++.|.+-.+.+....|-||.+.+.++.|.+.
T Consensus 201 ~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~----n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 201 SDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV----NGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred ccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc----cCCcceeEEEecCCceeeeeeecCCCceEEEEeChH
Confidence 88888877765433 56889999999999986542 122268999999999999999999999999999875
Q ss_pred cccccccceEEcCCccccc----cceeeccCCcEEeec
Q 000450 731 ISMNSISGSVLNGNTSVSS----LLLPIHEDGTFRQSQ 764 (1496)
Q Consensus 731 ~~~~~~sg~v~~g~~~~s~----~l~~~~~D~~ir~W~ 764 (1496)
+....-. +|...-.. -+-.-++|+++.+|.
T Consensus 277 lfe~~~~----ng~~~~~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 277 LFERNNK----NGTSTQPNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred Hhccccc----cCCccCCCcceEEEEEecCCccEEEEe
Confidence 4332211 22222221 122345699999997
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.5e-17 Score=192.13 Aligned_cols=221 Identities=17% Similarity=0.222 Sum_probs=174.4
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEE-EEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSS-SMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts-~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
+...+.++++++|+.......+ ...+.+|.+-|.. .+|.+... -+++.|+.|+.|.++.
T Consensus 28 i~s~sRd~t~~vw~~~~~~~l~--~~~~~~~~g~i~~~i~y~e~~~---~~l~~g~~D~~i~v~~--------------- 87 (745)
T KOG0301|consen 28 IISGSRDGTVKVWAKKGKQYLE--THAFEGPKGFIANSICYAESDK---GRLVVGGMDTTIIVFK--------------- 87 (745)
T ss_pred EeecCCCCceeeeeccCccccc--ceecccCcceeeccceeccccC---cceEeecccceEEEEe---------------
Confidence 3445567889999976543322 2335666666665 55443111 1699999999999833
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCC
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH 636 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~ 636 (1496)
.....+..+|+||...|.|++...+ +. ++|||.|.|+++|-+ +++...+.+|+.+|++++.-|+
T Consensus 88 ~~~~~P~~~LkgH~snVC~ls~~~~---------~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e---- 151 (745)
T KOG0301|consen 88 LSQAEPLYTLKGHKSNVCSLSIGED---------GT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPE---- 151 (745)
T ss_pred cCCCCchhhhhccccceeeeecCCc---------Cc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCC----
Confidence 2345788999999999999987654 44 999999999999975 6777889999999999999997
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 637 PWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 637 ~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
+ .++|||.|++|++|. .++++++|.||.+.|..+++-++..+ ++++.| |.|+.|++ +|++++++.
T Consensus 152 --~-~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~f-lScsND--------g~Ir~w~~-~ge~l~~~~ 216 (745)
T KOG0301|consen 152 --N-TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHF-LSCSND--------GSIRLWDL-DGEVLLEMH 216 (745)
T ss_pred --C-cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCe-EeecCC--------ceEEEEec-cCceeeeee
Confidence 4 899999999999996 48899999999999999999988765 566666 99999999 899999999
Q ss_pred CCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccc
Q 000450 717 GTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1496)
Q Consensus 717 gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~ 766 (1496)
||++.++.... ......++++.+|+++|+|...
T Consensus 217 ghtn~vYsis~-----------------~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 217 GHTNFVYSISM-----------------ALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ccceEEEEEEe-----------------cCCCCeEEEecCCceEEEeecC
Confidence 99987766531 1223456788889999999864
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-16 Score=185.98 Aligned_cols=241 Identities=16% Similarity=0.177 Sum_probs=184.2
Q ss_pred cCeEEEEEccccCCCCCcceeEeccCCceeeeccccccccCCCCcccceeecccccCccccccccCCCCCCCcccccccC
Q 000450 429 RPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHK 508 (1496)
Q Consensus 429 ~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dG~~i~~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h 508 (1496)
+.+++.|+.....+. ..+ ..+++=....+|.++.++. .+|. .+...+.+.++++|+..... .-+..++..|
T Consensus 46 Dg~i~~W~~~~d~~~-~s~-~~~asme~HsDWVNDiiL~--~~~~---tlIS~SsDtTVK~W~~~~~~--~~c~stir~H 116 (735)
T KOG0308|consen 46 DGIIRLWSVTQDSNE-PST-PYIASMEHHSDWVNDIILC--GNGK---TLISASSDTTVKVWNAHKDN--TFCMSTIRTH 116 (735)
T ss_pred CceEEEeccccccCC-ccc-chhhhhhhhHhHHhhHHhh--cCCC---ceEEecCCceEEEeecccCc--chhHhhhhcc
Confidence 445889974222110 001 1222222347898876542 2331 26677788999999987543 2567788999
Q ss_pred CccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEe-cCCccEEEEEEecCCCCccc
Q 000450 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL-GHTGAVLCLAAHRMVGTAKG 587 (1496)
Q Consensus 509 ~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~-gH~~~V~~La~spd~~~~~~ 587 (1496)
.+.|.|++++.... ..+|+|+-|+.|.+|..+.... ..-..........+. ||...|.+++.++.
T Consensus 117 ~DYVkcla~~ak~~---~lvaSgGLD~~IflWDin~~~~-----~l~~s~n~~t~~sl~sG~k~siYSLA~N~t------ 182 (735)
T KOG0308|consen 117 KDYVKCLAYIAKNN---ELVASGGLDRKIFLWDINTGTA-----TLVASFNNVTVNSLGSGPKDSIYSLAMNQT------ 182 (735)
T ss_pred cchheeeeecccCc---eeEEecCCCccEEEEEccCcch-----hhhhhccccccccCCCCCccceeeeecCCc------
Confidence 99999999753322 2789999999999966552110 000001112233344 89999999999886
Q ss_pred CcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecC
Q 000450 588 WSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG 667 (1496)
Q Consensus 588 ~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~g 667 (1496)
+..+++|+..+.+++||.++++.+..+++|+.-|..+..++| |..++|+|.|++|++||+...+|+.++..
T Consensus 183 ---~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dD------Gt~~ls~sSDgtIrlWdLgqQrCl~T~~v 253 (735)
T KOG0308|consen 183 ---GTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDD------GTRLLSASSDGTIRLWDLGQQRCLATYIV 253 (735)
T ss_pred ---ceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCC------CCeEeecCCCceEEeeeccccceeeeEEe
Confidence 789999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000450 668 HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 668 H~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg 709 (1496)
|...|+++..+|+=.++++|++| |.|+.=|+++.
T Consensus 254 H~e~VWaL~~~~sf~~vYsG~rd--------~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 254 HKEGVWALQSSPSFTHVYSGGRD--------GNIYRTDLRNP 287 (735)
T ss_pred ccCceEEEeeCCCcceEEecCCC--------CcEEecccCCc
Confidence 99999999999999999999998 99999999985
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.3e-15 Score=159.03 Aligned_cols=143 Identities=17% Similarity=0.183 Sum_probs=111.2
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCc-ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH-VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~-~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~l 605 (1496)
.|++|-+||.|.+ |+ ..++ +.+..-..|+..|+.+.+++| ..++++||.|.+-++
T Consensus 161 ~ii~Ghe~G~is~--~d-------------a~~g~~~v~s~~~h~~~Ind~q~s~d---------~T~FiT~s~Dttakl 216 (327)
T KOG0643|consen 161 TIIAGHEDGSISI--YD-------------ARTGKELVDSDEEHSSKINDLQFSRD---------RTYFITGSKDTTAKL 216 (327)
T ss_pred EEEEecCCCcEEE--EE-------------cccCceeeechhhhccccccccccCC---------cceEEecccCcccee
Confidence 6889999999998 33 3343 445556779999999999998 899999999999999
Q ss_pred EECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCC-cEEEEECCCC------------cEEEEecCCCCCc
Q 000450 606 WDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF-SVALASLETL------------RVERMFPGHPNYP 672 (1496)
Q Consensus 606 WDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~Dg-sV~lWdl~~~------------~~l~~~~gH~~~V 672 (1496)
||..+-+++.++.. ..||++.+++|.. ...++-|+.|. -|.-=+-+.| +.+....||-++|
T Consensus 217 ~D~~tl~v~Kty~t-e~PvN~aaisP~~-----d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPI 290 (327)
T KOG0643|consen 217 VDVRTLEVLKTYTT-ERPVNTAAISPLL-----DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPI 290 (327)
T ss_pred eeccceeeEEEeee-cccccceeccccc-----ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCc
Confidence 99999999999976 4589999999972 34444455442 2222223333 3455668999999
Q ss_pred EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 673 AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 673 ~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
++|+|+|+|+-.++|+.| |.|++.-..
T Consensus 291 NsvAfhPdGksYsSGGED--------G~VR~h~Fd 317 (327)
T KOG0643|consen 291 NSVAFHPDGKSYSSGGED--------GYVRLHHFD 317 (327)
T ss_pred ceeEECCCCcccccCCCC--------ceEEEEEec
Confidence 999999999999999988 999987443
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=174.57 Aligned_cols=210 Identities=17% Similarity=0.170 Sum_probs=176.4
Q ss_pred CcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEe
Q 000450 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1496)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~s 579 (1496)
++...+.+|.+.|+.++.-+.+. .+.+++.|.+-+| |..+++.|...+.||.+.|+|+.|+
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqp----i~gtASADhTA~i---------------Ws~Esg~CL~~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQP----ICGTASADHTARI---------------WSLESGACLATYTGHTGSVNSIKFH 199 (481)
T ss_pred eehhhhcccccceeeehhhcCCc----ceeecccccceeE---------------EeeccccceeeecccccceeeEEec
Confidence 45667889999999977555443 6777888888888 4466889999999999999999999
Q ss_pred cCCCCcccCcCCCEEEEEeCCCcEEEEECC------C------------------------------C----ceEEEEcc
Q 000450 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLG------S------------------------------G----NLITVMHH 619 (1496)
Q Consensus 580 pd~~~~~~~~~~~~L~SGs~DgtV~lWDl~------t------------------------------g----~~l~~~~~ 619 (1496)
+. +.+++++|.|++-.||... . + .++..|++
T Consensus 200 ~s---------~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg 270 (481)
T KOG0300|consen 200 NS---------GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG 270 (481)
T ss_pred cc---------cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec
Confidence 96 8999999999999999721 0 0 15678899
Q ss_pred cCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCC
Q 000450 620 HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVD 699 (1496)
Q Consensus 620 H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg 699 (1496)
|.+.|.+..|-.. |+.+++++.|.+..+||+++++++..+.||....+.++-+|..+++++.+.| -
T Consensus 271 H~~vV~a~dWL~g------g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrD--------t 336 (481)
T KOG0300|consen 271 HRAVVSACDWLAG------GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRD--------T 336 (481)
T ss_pred cccceEehhhhcC------cceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccC--------c
Confidence 9999999999887 8999999999999999999999999999999999999999999999999999 8
Q ss_pred EEEEEECCCC-eEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecccccc
Q 000450 700 VLFIWDVKTG-ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1496)
Q Consensus 700 ~V~VWDl~tg-~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e 769 (1496)
+.++||.+.. ..+.++.||+..++...|.. +... ++-+.|.++|+|+|++-.
T Consensus 337 TFRLWDFReaI~sV~VFQGHtdtVTS~vF~~-------------dd~v-----VSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 337 TFRLWDFREAIQSVAVFQGHTDTVTSVVFNT-------------DDRV-----VSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred eeEeccchhhcceeeeecccccceeEEEEec-------------CCce-----eecCCCceEEEeeecccc
Confidence 9999999753 56889999999998887762 2222 233348899999997644
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-12 Score=157.36 Aligned_cols=494 Identities=12% Similarity=0.055 Sum_probs=270.7
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccc-cceeEeeeccccccccCccccccccccccccc
Q 000450 17 HRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHS-APIADLSICYPAMVSRDGKAEHWKAENSSNVM 95 (1496)
Q Consensus 17 h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt-~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~ 95 (1496)
..|+|+|++.+.+.||.+=.||.|.+|++.. + .-....+.||+ ..|.+|+||
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~--~--w~~~~vi~g~~drsIE~L~W~----------------------- 78 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN--N--WFLEPVIHGPEDRSIESLAWA----------------------- 78 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCC--C--ceeeEEEecCCCCceeeEEEc-----------------------
Confidence 4599999999999999999999999999984 2 22333455665 589999952
Q ss_pred ccccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCcccccccccccccc
Q 000450 96 GKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDL 175 (1496)
Q Consensus 96 g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~ 175 (1496)
++.+|.|.+.+|+|+-||+.+++.+...... |.+.--.+..+....+++||+
T Consensus 79 -----e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~---gg~IWsiai~p~~~~l~Igcd-------------------- 130 (691)
T KOG2048|consen 79 -----EGGRLFSSGLSGSITEWDLHTLKQKYNIDSN---GGAIWSIAINPENTILAIGCD-------------------- 130 (691)
T ss_pred -----cCCeEEeecCCceEEEEecccCceeEEecCC---CcceeEEEeCCccceEEeecC--------------------
Confidence 4667999999999999999999887765544 333334466678888899986
Q ss_pred cccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCcccc
Q 000450 176 VSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDR 255 (1496)
Q Consensus 176 ~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~~ 255 (1496)
++.+..++...+++.+.-.-.+. .+.+-++++. +++.+ ++.|+.||.|++||+..+..+.
T Consensus 131 -------------dGvl~~~s~~p~~I~~~r~l~rq-~sRvLslsw~---~~~~~--i~~Gs~Dg~Iriwd~~~~~t~~- 190 (691)
T KOG2048|consen 131 -------------DGVLYDFSIGPDKITYKRSLMRQ-KSRVLSLSWN---PTGTK--IAGGSIDGVIRIWDVKSGQTLH- 190 (691)
T ss_pred -------------CceEEEEecCCceEEEEeecccc-cceEEEEEec---CCccE--EEecccCceEEEEEcCCCceEE-
Confidence 24455555555555443221121 2345666665 33332 6677999999999998763110
Q ss_pred ccCCCcccCCCccceeeeccCcccCce----EEEEecCCcEEEEEeCCeEEEEEcCCCc--ccceee-eecceeEeeCCC
Q 000450 256 EEGNGLCKSSSQLDMAILQNGVVEGGH----LVSVATCGNIIALVLKDHCIFRLLGSGS--TIGEIC-FVDNLFCLEGGS 328 (1496)
Q Consensus 256 ~~~~~l~~~ek~i~~v~~~~~~~~~~~----~va~s~dg~~l~t~~~~~~~~~l~d~~~--~ige~~-~~~~~l~~~~~~ 328 (1496)
-...++ .....+.. .|.+-.++ +|+++++.+ .++.||... .+..+. .-..++|.....
T Consensus 191 -------~~~~~~------d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G-~V~FWd~~~gTLiqS~~~h~adVl~Lav~~ 255 (691)
T KOG2048|consen 191 -------IITMQL------DRLSKREPTIVWSVLFLRDS-TIASGDSAG-TVTFWDSIFGTLIQSHSCHDADVLALAVAD 255 (691)
T ss_pred -------Eeeecc------cccccCCceEEEEEEEeecC-cEEEecCCc-eEEEEcccCcchhhhhhhhhcceeEEEEcC
Confidence 000011 11112112 33333334 455555554 334477654 222210 001222222111
Q ss_pred CCceeeeeEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEecCCCCCcccCeeeecCc--CCCCCceeeEEEe
Q 000450 329 TNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAV--SYPSGVKFSIHFI 406 (1496)
Q Consensus 329 ~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~~~~~~~~~~~~~ip~~--~~~~~~~~~~~f~ 406 (1496)
+ ..++...+.|+.+..|+....... |.+-.. ..+++.+....+-
T Consensus 256 ~----------------------------~d~vfsaGvd~~ii~~~~~~~~~~------wv~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 256 N----------------------------EDRVFSAGVDPKIIQYSLTTNKSE------WVINSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred C----------------------------CCeEEEccCCCceEEEEecCCccc------eeeeccccCCcccceeeeeec
Confidence 1 226666777777777766543221 311110 1122222211111
Q ss_pred ecceeeeeeeeeeccccccccccCeEEEEEc-cccCCCCC------cceeEeccCC--ceeeeccccccccCCCCcccce
Q 000450 407 QMSLYLLRMETVCFHVEETSQWRPYISVWSL-SQKHSGPG------KQCRMVGEGF--SFVDWVNNSTFLDENEGSCTGK 477 (1496)
Q Consensus 407 ~~~~~l~~v~s~~~~~~~~~~~~p~v~vwsl-~~~~~~~~------~~~k~l~~G~--~~~~w~~~~~~~~~~dG~~i~~ 477 (1496)
. .+++.. .+. .+.+-.+ +.++-.+. .-++....+. ....|
T Consensus 302 ~---~l~sgG-----~d~------~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w----------------- 350 (691)
T KOG2048|consen 302 N---ALISGG-----RDF------TLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLW----------------- 350 (691)
T ss_pred c---eEEecc-----eee------EEEEccccccCchhhhccccccccceeecCccceEEEEe-----------------
Confidence 1 111110 000 0111000 00000000 0000111110 01223
Q ss_pred eecccccCccccccccCCCCCC-----CcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCC
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAG-----DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPG 552 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~-----~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~ 552 (1496)
....+.+|.+-...+.+ .+.+.+......|++.+..++.. .++.+. -.+.+|++.+.-. ..
T Consensus 351 -----~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~----~Ia~st-~~~~~iy~L~~~~----~v 416 (691)
T KOG2048|consen 351 -----KAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGN----LIAIST-VSRTKIYRLQPDP----NV 416 (691)
T ss_pred -----ccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCC----EEEEee-ccceEEEEeccCc----ce
Confidence 12334445544332221 22222333345677777555554 666654 3456665544100 00
Q ss_pred CccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEe-CCCcEEEEECCCCc--eEEEEc--ccCCCEEEE
Q 000450 553 ASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-MDCSIRIWDLGSGN--LITVMH--HHVAPVRQI 627 (1496)
Q Consensus 553 ~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs-~DgtV~lWDl~tg~--~l~~~~--~H~~~V~~l 627 (1496)
+ .+.+.....-.-.+..+.|.-| +..++-.+ .+..+.+.+++++. .+..+. ....+|..+
T Consensus 417 k------~~~v~~~~~~~~~a~~i~ftid---------~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l 481 (691)
T KOG2048|consen 417 K------VINVDDVPLALLDASAISFTID---------KNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRL 481 (691)
T ss_pred e------EEEeccchhhhccceeeEEEec---------CceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeE
Confidence 0 0001111112334667777776 55555555 77888888887654 222222 346789999
Q ss_pred EECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcC-CCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 628 ~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~sp-dg~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
..+|+ |++||..+.++.|.+|++++++.......-...|++++++| +.+.|+++..| +.|+=+|+
T Consensus 482 ~~Ssd------G~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~--------nQv~efdi 547 (691)
T KOG2048|consen 482 VVSSD------GNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSN--------NQVFEFDI 547 (691)
T ss_pred EEcCC------CCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecC--------CeEEEEec
Confidence 99999 99999999999999999999877555545558899999995 66788888887 99999999
Q ss_pred CC
Q 000450 707 KT 708 (1496)
Q Consensus 707 ~t 708 (1496)
+.
T Consensus 548 ~~ 549 (691)
T KOG2048|consen 548 EA 549 (691)
T ss_pred ch
Confidence 54
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.3e-16 Score=163.10 Aligned_cols=197 Identities=18% Similarity=0.228 Sum_probs=169.6
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
+++....+..+.+||...+ +....+.+|...|+++.|..+.. .+++|+.|.++++|...
T Consensus 73 kf~s~GgDk~v~vwDV~TG----kv~Rr~rgH~aqVNtV~fNeesS----Vv~SgsfD~s~r~wDCR------------- 131 (307)
T KOG0316|consen 73 KFASCGGDKAVQVWDVNTG----KVDRRFRGHLAQVNTVRFNEESS----VVASGSFDSSVRLWDCR------------- 131 (307)
T ss_pred ccccCCCCceEEEEEcccC----eeeeecccccceeeEEEecCcce----EEEeccccceeEEEEcc-------------
Confidence 4666677888999999874 66778899999999999887777 89999999999994433
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCC
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH 636 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~ 636 (1496)
..+.++++.+....+.|.++... +..++.||.||+++.||++.|++...+-+| ||+++.|+++
T Consensus 132 S~s~ePiQildea~D~V~Si~v~-----------~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d---- 194 (307)
T KOG0316|consen 132 SRSFEPIQILDEAKDGVSSIDVA-----------EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKD---- 194 (307)
T ss_pred cCCCCccchhhhhcCceeEEEec-----------ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCC----
Confidence 34567899999889999999875 577999999999999999999877666554 8999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCc--EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 637 PWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYP--AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 637 ~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V--~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
++|.+.++-|+++++.|-++|+.+..+.||.+.= ..++++.....+++|+.| |.|++||+..++.+..
T Consensus 195 --~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSED--------G~Vy~wdLvd~~~~sk 264 (307)
T KOG0316|consen 195 --GNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSED--------GKVYFWDLVDETQISK 264 (307)
T ss_pred --CCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCC--------ceEEEEEeccceeeee
Confidence 9999999999999999999999999999998743 456677777889999988 9999999999999988
Q ss_pred EeCCCCC
Q 000450 715 LRGTASH 721 (1496)
Q Consensus 715 l~gh~a~ 721 (1496)
+.-|...
T Consensus 265 ~~~~~~v 271 (307)
T KOG0316|consen 265 LSVVSTV 271 (307)
T ss_pred eccCCce
Confidence 8877765
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-16 Score=176.98 Aligned_cols=234 Identities=19% Similarity=0.173 Sum_probs=179.0
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
.+++...+..|++|+....+. .+..++.+..+.|+++.+-+++. .++.++.|+..++|+
T Consensus 189 tlatgg~Dr~Ik~W~v~~~k~--~~~~tLaGs~g~it~~d~d~~~~----~~iAas~d~~~r~Wn--------------- 247 (459)
T KOG0288|consen 189 TLATGGSDRIIKLWNVLGEKS--ELISTLAGSLGNITSIDFDSDNK----HVIAASNDKNLRLWN--------------- 247 (459)
T ss_pred hhhhcchhhhhhhhhcccchh--hhhhhhhccCCCcceeeecCCCc----eEEeecCCCceeeee---------------
Confidence 366677788999999887652 56677888888999999777666 888889999999943
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCC-Cccc-----------------------Cc------CCCEEEEEeCCCcEEEE
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVG-TAKG-----------------------WS------FNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~-~~~~-----------------------~~------~~~~L~SGs~DgtV~lW 606 (1496)
..+.+...+|.||++.|+++.|...+. ...+ ++ ....++||-.|++|++|
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfw 327 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFW 327 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEE
Confidence 445567788899999999998865431 0000 00 13345667777777777
Q ss_pred ECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCC----CCCcEEEEEcCCCC
Q 000450 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH----PNYPAKVVWDCPRG 682 (1496)
Q Consensus 607 Dl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH----~~~V~~V~~spdg~ 682 (1496)
|++++.+......+. .|+++..+++ +..+.+.+.|.++.+.|+++.+..+.|..- ....+.+.|||++.
T Consensus 328 D~Rs~~~~~sv~~gg-~vtSl~ls~~------g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~ 400 (459)
T KOG0288|consen 328 DIRSADKTRSVPLGG-RVTSLDLSMD------GLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS 400 (459)
T ss_pred eccCCceeeEeecCc-ceeeEeeccC------CeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCc
Confidence 777777777777665 8999999998 888889999999999999999888777532 22488999999999
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCC--ceeeeeecccccccccceEEcCCccccccceeeccCCcE
Q 000450 683 YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASH--SMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTF 760 (1496)
Q Consensus 683 ~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~--vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~i 760 (1496)
|+++|+.| |.||||++.+|+++..+....+. +++..|++ .+ .+++.+.++..+
T Consensus 401 YvaAGS~d--------gsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~----------------sG-~~Llsadk~~~v 455 (459)
T KOG0288|consen 401 YVAAGSAD--------GSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP----------------SG-SGLLSADKQKAV 455 (459)
T ss_pred eeeeccCC--------CcEEEEEccCceEEEEeccCCCCcceEEEEEcC----------------CC-chhhcccCCcce
Confidence 99999999 99999999999999999887766 55555552 11 234466667778
Q ss_pred Eee
Q 000450 761 RQS 763 (1496)
Q Consensus 761 r~W 763 (1496)
..|
T Consensus 456 ~lW 458 (459)
T KOG0288|consen 456 TLW 458 (459)
T ss_pred Eec
Confidence 877
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6e-16 Score=175.20 Aligned_cols=242 Identities=19% Similarity=0.195 Sum_probs=175.2
Q ss_pred eeeccccccccCCCCcccceeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcE
Q 000450 458 VDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEI 537 (1496)
Q Consensus 458 ~~w~~~~~~~~~~dG~~i~~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I 537 (1496)
-+|+..+ .++|. .+++++.+.+.-+|++....+ -.+..++.+|...|..+++.|+.. ++++++.|..+
T Consensus 226 EVWfl~F----S~nGk---yLAsaSkD~Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDdr----yLlaCg~~e~~ 293 (519)
T KOG0293|consen 226 EVWFLQF----SHNGK---YLASASKDSTAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDDR----YLLACGFDEVL 293 (519)
T ss_pred cEEEEEE----cCCCe---eEeeccCCceEEEEEEecCcc-eeeeeeeecccCceEEEEECCCCC----eEEecCchHhe
Confidence 3565554 44562 367777888899999887655 467788999999999999444443 66666666666
Q ss_pred EEEEecccccCCCCCCccccCCcceEEEE-ecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEE
Q 000450 538 EVIQFDLFERHNSPGASLKVNSHVSRQYF-LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITV 616 (1496)
Q Consensus 538 ~V~~~~~l~~~d~~~~~~d~~s~~~~~~l-~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~ 616 (1496)
.+ ||+.++.....+ .+|...+.+++|.|| +..+++|+.|+++..||+.. +.+..
T Consensus 294 ~l---------------wDv~tgd~~~~y~~~~~~S~~sc~W~pD---------g~~~V~Gs~dr~i~~wdlDg-n~~~~ 348 (519)
T KOG0293|consen 294 SL---------------WDVDTGDLRHLYPSGLGFSVSSCAWCPD---------GFRFVTGSPDRTIIMWDLDG-NILGN 348 (519)
T ss_pred ee---------------ccCCcchhhhhcccCcCCCcceeEEccC---------CceeEecCCCCcEEEecCCc-chhhc
Confidence 55 446666665544 345578999999998 88999999999999999862 22211
Q ss_pred Ecc------------------------------------------cCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEE
Q 000450 617 MHH------------------------------------------HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 654 (1496)
Q Consensus 617 ~~~------------------------------------------H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lW 654 (1496)
+.+ ...+|+++.++.+ +++++.-=.+..+.+|
T Consensus 349 W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d------~k~~LvnL~~qei~LW 422 (519)
T KOG0293|consen 349 WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKD------GKLALVNLQDQEIHLW 422 (519)
T ss_pred ccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCC------CcEEEEEcccCeeEEe
Confidence 111 2245666666666 7777777778888899
Q ss_pred ECCCCcEEEEecCCCC--CcEEEEEcC-CCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeccc
Q 000450 655 SLETLRVERMFPGHPN--YPAKVVWDC-PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGI 731 (1496)
Q Consensus 655 dl~~~~~l~~~~gH~~--~V~~V~~sp-dg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~ 731 (1496)
|+++.+.++.+.||.. .+-.-+|-. +..++++|+.| +.||||+.++|+++.++.||...+-++.+.|
T Consensus 423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED--------~kvyIWhr~sgkll~~LsGHs~~vNcVswNP-- 492 (519)
T KOG0293|consen 423 DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED--------SKVYIWHRISGKLLAVLSGHSKTVNCVSWNP-- 492 (519)
T ss_pred ecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCC--------ceEEEEEccCCceeEeecCCcceeeEEecCC--
Confidence 9998888888889876 455556754 45899999998 9999999999999999999997666664443
Q ss_pred ccccccceEEcCCccccccceeeccCCcEEeeccc
Q 000450 732 SMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1496)
Q Consensus 732 ~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~ 766 (1496)
....-+-+.+.|++||+|-..
T Consensus 493 --------------~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 493 --------------ADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred --------------CCHHHhhccCCCCeEEEecCC
Confidence 222223344569999999763
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-16 Score=182.37 Aligned_cols=204 Identities=22% Similarity=0.217 Sum_probs=165.4
Q ss_pred cccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000450 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1496)
Q Consensus 505 ~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~ 584 (1496)
+..-...|.+..+-+++. .+++|.+.|.|+| ++ ..+....+.+++|+.+|....|+|.
T Consensus 64 ~srFk~~v~s~~fR~DG~----LlaaGD~sG~V~v--fD-------------~k~r~iLR~~~ah~apv~~~~f~~~--- 121 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGR----LLAAGDESGHVKV--FD-------------MKSRVILRQLYAHQAPVHVTKFSPQ--- 121 (487)
T ss_pred HHhhccceeEEEeecCCe----EEEccCCcCcEEE--ec-------------cccHHHHHHHhhccCceeEEEeccc---
Confidence 445567888888777776 8899999999999 33 2223456778999999999999997
Q ss_pred cccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cEEE
Q 000450 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVER 663 (1496)
Q Consensus 585 ~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~-~~l~ 663 (1496)
++..|++|++|+.+++||+.+......+.+|+..|++.+|+|.. ++.++|||.||+|++||++.. ..+.
T Consensus 122 -----d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~-----~hivvtGsYDg~vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 122 -----DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPAN-----DHIVVTGSYDGKVRLWDTRSLTSRVV 191 (487)
T ss_pred -----CCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCC-----CeEEEecCCCceEEEEEeccCCceeE
Confidence 48899999999999999999998877899999999999999985 779999999999999999987 5556
Q ss_pred EecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe-EEEEEeCCCCCceeeeeecccccccccceEEc
Q 000450 664 MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA-RERVLRGTASHSMFDHFCKGISMNSISGSVLN 742 (1496)
Q Consensus 664 ~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~-~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~ 742 (1496)
++. |..+|..|.+-|.|..+++++. ..|+|||+.+|. ++..+..|...+++..+.. +
T Consensus 192 eln-hg~pVe~vl~lpsgs~iasAgG---------n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s------------~ 249 (487)
T KOG0310|consen 192 ELN-HGCPVESVLALPSGSLIASAGG---------NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS------------D 249 (487)
T ss_pred Eec-CCCceeeEEEcCCCCEEEEcCC---------CeEEEEEecCCceehhhhhcccceEEEEEeec------------C
Confidence 654 9999999999999999998876 489999999654 4555555998888876551 1
Q ss_pred CCccccccceeeccCCcEEeecccc
Q 000450 743 GNTSVSSLLLPIHEDGTFRQSQIQN 767 (1496)
Q Consensus 743 g~~~~s~~l~~~~~D~~ir~W~l~~ 767 (1496)
+.-..++++ |+.+|+++.-+
T Consensus 250 ~~rLlS~sL-----D~~VKVfd~t~ 269 (487)
T KOG0310|consen 250 STRLLSGSL-----DRHVKVFDTTN 269 (487)
T ss_pred CceEeeccc-----ccceEEEEccc
Confidence 233344444 99999887533
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.6e-16 Score=187.08 Aligned_cols=229 Identities=17% Similarity=0.159 Sum_probs=185.2
Q ss_pred eeecccccCccccccccCCCCCCCccccccc-CCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVH-KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~-h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~ 555 (1496)
.+++...++.+.+||....+. ..++.+ |...|.+++ +....+.+|+.||.|.++.....
T Consensus 231 ~LavG~~~g~v~iwD~~~~k~----~~~~~~~h~~rvg~la------W~~~~lssGsr~~~I~~~dvR~~---------- 290 (484)
T KOG0305|consen 231 HLAVGTSDGTVQIWDVKEQKK----TRTLRGSHASRVGSLA------WNSSVLSSGSRDGKILNHDVRIS---------- 290 (484)
T ss_pred EEEEeecCCeEEEEehhhccc----cccccCCcCceeEEEe------ccCceEEEecCCCcEEEEEEecc----------
Confidence 377788889999999876544 344556 899999988 66668999999999998443310
Q ss_pred ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCC
Q 000450 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE 635 (1496)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~ 635 (1496)
. ....++.+|...|..+.|++| +.+|+||+.|+.+.|||.....++..+..|.+.|..++|+|-.
T Consensus 291 ---~-~~~~~~~~H~qeVCgLkws~d---------~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q-- 355 (484)
T KOG0305|consen 291 ---Q-HVVSTLQGHRQEVCGLKWSPD---------GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ-- 355 (484)
T ss_pred ---h-hhhhhhhcccceeeeeEECCC---------CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc--
Confidence 0 112248899999999999998 8999999999999999998889999999999999999999984
Q ss_pred CCCCCEEEEEe--CCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 636 HPWSDCFLSVG--EDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 636 ~~~g~~l~Sgs--~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
..+||+|+ .|++|++||..+++.+.... -.+.|..+.|++..+-|+++. |+++ +.|.||+..+.+++.
T Consensus 356 ---~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sth----G~s~--n~i~lw~~ps~~~~~ 425 (484)
T KOG0305|consen 356 ---SGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTH----GYSE--NQITLWKYPSMKLVA 425 (484)
T ss_pred ---cCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEec----CCCC--CcEEEEeccccceee
Confidence 66899875 69999999999999988765 456799999999998887653 3344 789999999999999
Q ss_pred EEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecccc
Q 000450 714 VLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1496)
Q Consensus 714 ~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~ 767 (1496)
.+.||..+++.....+ + |...+ ..+.|.++|.|++..
T Consensus 426 ~l~gH~~RVl~la~SP----d--------g~~i~-----t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 426 ELLGHTSRVLYLALSP----D--------GETIV-----TGAADETLRFWNLFD 462 (484)
T ss_pred eecCCcceeEEEEECC----C--------CCEEE-----EecccCcEEeccccC
Confidence 9999999988774442 1 34433 444599999999743
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=192.46 Aligned_cols=231 Identities=16% Similarity=0.170 Sum_probs=179.5
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
+++.+..+.+.+||+..... ..+...|.+|...++++.+.+ +.|+.|++|+.||.|++ || .
T Consensus 103 IAT~s~nG~i~vWdlnk~~r-nk~l~~f~EH~Rs~~~ldfh~---tep~iliSGSQDg~vK~--~D-------------l 163 (839)
T KOG0269|consen 103 IATCSTNGVISVWDLNKSIR-NKLLTVFNEHERSANKLDFHS---TEPNILISGSQDGTVKC--WD-------------L 163 (839)
T ss_pred heeecCCCcEEEEecCcccc-chhhhHhhhhccceeeeeecc---CCccEEEecCCCceEEE--Ee-------------e
Confidence 67778888999999987422 245567899999999988555 56789999999999999 33 3
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc-eEEEEcccCCCEEEEEECCCCCCC
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSPPQTEH 636 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~-~l~~~~~H~~~V~~l~~sPd~~~~ 636 (1496)
...+.+.++.+....|..+.|+|. .+..++++...|.+++||++... +...|..|.++|.++.|+|+
T Consensus 164 R~~~S~~t~~~nSESiRDV~fsp~--------~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn---- 231 (839)
T KOG0269|consen 164 RSKKSKSTFRSNSESIRDVKFSPG--------YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN---- 231 (839)
T ss_pred ecccccccccccchhhhceeeccC--------CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC----
Confidence 334566778888899999999996 37899999999999999998654 56788999999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEecC-CCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC-eEEEE
Q 000450 637 PWSDCFLSVGEDFSVALASLETLRVERMFPG-HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERV 714 (1496)
Q Consensus 637 ~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~g-H~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg-~~~~~ 714 (1496)
+.+|||||.|+.|+|||..+.+.-....- -..+|.+|+|.|+..+.+..|.- .. |-.|+|||++.. -..++
T Consensus 232 --r~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm---v~--dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 232 --REWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM---VV--DTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred --CceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc---cc--cceEEEEeecccccccee
Confidence 89999999999999999987654322222 34689999999998876655532 12 378999999764 34678
Q ss_pred EeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEe
Q 000450 715 LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQ 762 (1496)
Q Consensus 715 l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~ 762 (1496)
+..|+..+..++ |.......++.+.+|+++.+
T Consensus 305 ~~eH~~~vt~i~----------------W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 305 FLEHTDSVTGIA----------------WDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred eeccCcccccee----------------ccCCCceeeEeecCccHHHH
Confidence 888887665553 33334556778888887775
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.2e-16 Score=185.54 Aligned_cols=214 Identities=21% Similarity=0.253 Sum_probs=170.7
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
+.....+..+.+|...+..| ..++.+|...|+|+....+. .+++|+-|.+.+||+-.
T Consensus 74 l~~g~~D~~i~v~~~~~~~P----~~~LkgH~snVC~ls~~~~~-----~~iSgSWD~TakvW~~~-------------- 130 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQAEP----LYTLKGHKSNVCSLSIGEDG-----TLISGSWDSTAKVWRIG-------------- 130 (745)
T ss_pred eEeecccceEEEEecCCCCc----hhhhhccccceeeeecCCcC-----ceEecccccceEEecch--------------
Confidence 44445566677888777655 56789999999998755444 48999999999994432
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCC
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~ 637 (1496)
++...+.||+..|++++.-|+ +.++|||.|.+|++|.- ++++.+|.+|+.-|+.+++-|+
T Consensus 131 ---~l~~~l~gH~asVWAv~~l~e----------~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~----- 190 (745)
T KOG0301|consen 131 ---ELVYSLQGHTASVWAVASLPE----------NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD----- 190 (745)
T ss_pred ---hhhcccCCcchheeeeeecCC----------CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC-----
Confidence 455668999999999999885 48999999999999984 8899999999999999999886
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
..|+|++.||.|++|++ +|+++..+.||.+.|.++...+++..+++++.| ++++||+.. ++..++.=
T Consensus 191 --~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gED--------rtlriW~~~--e~~q~I~l 257 (745)
T KOG0301|consen 191 --SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGED--------RTLRIWKKD--ECVQVITL 257 (745)
T ss_pred --CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCC--------ceEEEeecC--ceEEEEec
Confidence 47899999999999999 799999999999999999988888899999999 999999976 77777764
Q ss_pred CCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 718 TASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 718 h~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
.+-.+..+ .| +.+|+ ++.-++||.+|+|..
T Consensus 258 PttsiWsa-~~-----------L~NgD------Ivvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 258 PTTSIWSA-KV-----------LLNGD------IVVGGSDGRVRVFTV 287 (745)
T ss_pred CccceEEE-EE-----------eeCCC------EEEeccCceEEEEEe
Confidence 33333333 11 11232 334445999999864
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.8e-16 Score=176.59 Aligned_cols=121 Identities=15% Similarity=0.168 Sum_probs=102.3
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEccc----CCCEEEEEECCCCCC
Q 000450 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH----VAPVRQIILSPPQTE 635 (1496)
Q Consensus 560 ~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H----~~~V~~l~~sPd~~~ 635 (1496)
..+......|. .|++|..+++ +..+.+++.|.++.+.|+++.+..+.|... ...++.+.|+|+
T Consensus 332 ~~~~~sv~~gg-~vtSl~ls~~---------g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd--- 398 (459)
T KOG0288|consen 332 ADKTRSVPLGG-RVTSLDLSMD---------GLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD--- 398 (459)
T ss_pred CceeeEeecCc-ceeeEeeccC---------CeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC---
Confidence 34444444443 8999999887 788888899999999999999988887653 234889999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC--CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEE
Q 000450 636 HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN--YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1496)
Q Consensus 636 ~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~--~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VW 704 (1496)
+.++++||.||+|.||++.++++...+..... .|+++.|+|.|.+|++++.+ +.+.+|
T Consensus 399 ---~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~--------~~v~lW 458 (459)
T KOG0288|consen 399 ---GSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQ--------KAVTLW 458 (459)
T ss_pred ---CceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCC--------cceEec
Confidence 89999999999999999999999988765544 59999999999999999888 999999
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.7e-14 Score=166.24 Aligned_cols=233 Identities=11% Similarity=0.061 Sum_probs=164.0
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEE-EecccccCCCCCCccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVI-QFDLFERHNSPGASLK 556 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~-~~~~l~~~d~~~~~~d 556 (1496)
+...+..|-.++|...++..- .....+.||.+.|+.+.+.+..- ++++.+.|-+-+++ +|. ....|.
T Consensus 331 ii~~g~~Gg~hlWkt~d~~~w-~~~~~iSGH~~~V~dv~W~psGe----flLsvs~DQTTRlFa~wg-------~q~~wH 398 (764)
T KOG1063|consen 331 IIAHGRTGGFHLWKTKDKTFW-TQEPVISGHVDGVKDVDWDPSGE----FLLSVSLDQTTRLFARWG-------RQQEWH 398 (764)
T ss_pred EEEecccCcEEEEeccCccce-eeccccccccccceeeeecCCCC----EEEEeccccceeeecccc-------ccccee
Confidence 445567788889984332111 22234689999999998444433 89999999999984 331 111122
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCC--------------------------
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-------------------------- 610 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~t-------------------------- 610 (1496)
- +..-+-|....+|+++-+. ...++||.....+|+++...
T Consensus 399 E-----iaRPQiHGyDl~c~~~vn~---------~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~V 464 (764)
T KOG1063|consen 399 E-----IARPQIHGYDLTCLSFVNE---------DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANV 464 (764)
T ss_pred e-----ecccccccccceeeehccC---------CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccc
Confidence 1 1112346778999999773 46789999999999998741
Q ss_pred -----------------Cc---------------------------------eEEEEcccCCCEEEEEECCCCCCCCCCC
Q 000450 611 -----------------GN---------------------------------LITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1496)
Q Consensus 611 -----------------g~---------------------------------~l~~~~~H~~~V~~l~~sPd~~~~~~g~ 640 (1496)
|. .++++.+|...|.+++.+|+ ++
T Consensus 465 paLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~------gn 538 (764)
T KOG1063|consen 465 PALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT------GN 538 (764)
T ss_pred ccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC------CC
Confidence 00 11245689999999999999 99
Q ss_pred EEEEEeCC-----CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE-EEE
Q 000450 641 CFLSVGED-----FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR-ERV 714 (1496)
Q Consensus 641 ~l~Sgs~D-----gsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~-~~~ 714 (1496)
.++|++.. .-|+||+..+....+.+.+|.-.|+.++|||||+||++.|+| .++.+|....... ...
T Consensus 539 liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD--------Rt~sl~~~~~~~~~e~~ 610 (764)
T KOG1063|consen 539 LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD--------RTVSLYEVQEDIKDEFR 610 (764)
T ss_pred EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC--------ceEEeeeeecccchhhh
Confidence 99999864 457999999988888999999999999999999999999999 9999998754322 222
Q ss_pred ---EeCCCCCceeeeeecccccccccceEEcCCcccccc-ceeeccCCcEEeeccccc
Q 000450 715 ---LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSL-LLPIHEDGTFRQSQIQND 768 (1496)
Q Consensus 715 ---l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~-l~~~~~D~~ir~W~l~~~ 768 (1496)
+..|+- ++.+-++..... +++.++|.++++|.....
T Consensus 611 fa~~k~HtR------------------IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 611 FACLKAHTR------------------IIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred hccccccce------------------EEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 334442 222222333333 788999999999987443
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-16 Score=186.36 Aligned_cols=234 Identities=13% Similarity=0.146 Sum_probs=185.2
Q ss_pred eecccccCccccccccCCCC--CCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQ--AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~--~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~ 555 (1496)
+.++..++.+++|+...... .......+..|.+-|+.+....... .+++++.|-+|++|+-.
T Consensus 40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~----tlIS~SsDtTVK~W~~~------------ 103 (735)
T KOG0308|consen 40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK----TLISASSDTTVKVWNAH------------ 103 (735)
T ss_pred EEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC----ceEEecCCceEEEeecc------------
Confidence 45556778888998764332 2234667788988888776555554 79999999999994433
Q ss_pred ccCCcceEEEEecCCccEEEEEE-ecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc--eEEEE--------c-ccCCC
Q 000450 556 KVNSHVSRQYFLGHTGAVLCLAA-HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN--LITVM--------H-HHVAP 623 (1496)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~La~-spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~--~l~~~--------~-~H~~~ 623 (1496)
....-+..++..|++.|.||++ .++ ..+++|||-|+.|.+||+++|. .++++ . ++..+
T Consensus 104 -~~~~~c~stir~H~DYVkcla~~ak~---------~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s 173 (735)
T KOG0308|consen 104 -KDNTFCMSTIRTHKDYVKCLAYIAKN---------NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS 173 (735)
T ss_pred -cCcchhHhhhhcccchheeeeecccC---------ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence 1111456778899999999999 554 7899999999999999999883 33332 2 78889
Q ss_pred EEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEE
Q 000450 624 VRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFI 703 (1496)
Q Consensus 624 V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~V 703 (1496)
|++++.++. |..|++|+..+.+++||.++++.+..+.||...|..+..++||..+++++.| |+|++
T Consensus 174 iYSLA~N~t------~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSD--------gtIrl 239 (735)
T KOG0308|consen 174 IYSLAMNQT------GTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSD--------GTIRL 239 (735)
T ss_pred eeeeecCCc------ceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCC--------ceEEe
Confidence 999999998 8899999999999999999999999999999999999999999999999998 99999
Q ss_pred EECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccccc
Q 000450 704 WDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQND 768 (1496)
Q Consensus 704 WDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~ 768 (1496)
||+..++++.++.-|...+......+. -..++.-.+|+.+..=+|.+.
T Consensus 240 WdLgqQrCl~T~~vH~e~VWaL~~~~s-----------------f~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 240 WDLGQQRCLATYIVHKEGVWALQSSPS-----------------FTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eeccccceeeeEEeccCceEEEeeCCC-----------------cceEEecCCCCcEEecccCCc
Confidence 999999999999999988777632211 112344455777777666655
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-16 Score=190.86 Aligned_cols=193 Identities=19% Similarity=0.224 Sum_probs=153.8
Q ss_pred CEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEE
Q 000450 526 YAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1496)
Q Consensus 526 ~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~l 605 (1496)
+.|++++.+|.|.+|+.... -..+.+..|..|+..|+++.||+.+ ..+|+|||.||+|++
T Consensus 101 NlIAT~s~nG~i~vWdlnk~------------~rnk~l~~f~EH~Rs~~~ldfh~te--------p~iliSGSQDg~vK~ 160 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKS------------IRNKLLTVFNEHERSANKLDFHSTE--------PNILISGSQDGTVKC 160 (839)
T ss_pred hhheeecCCCcEEEEecCcc------------ccchhhhHhhhhccceeeeeeccCC--------ccEEEecCCCceEEE
Confidence 47999999999999554410 1124556788999999999999863 789999999999999
Q ss_pred EECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC-CcEEEEecCCCCCcEEEEEcCCCCEE
Q 000450 606 WDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-LRVERMFPGHPNYPAKVVWDCPRGYI 684 (1496)
Q Consensus 606 WDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~-~~~l~~~~gH~~~V~~V~~spdg~~L 684 (1496)
||++..+-..++.+....|+.|.|+|.. +..|+++.+.|.+.+||++. .++...+..|.++|.++.|+|++.+|
T Consensus 161 ~DlR~~~S~~t~~~nSESiRDV~fsp~~-----~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~l 235 (839)
T KOG0269|consen 161 WDLRSKKSKSTFRSNSESIRDVKFSPGY-----GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWL 235 (839)
T ss_pred EeeecccccccccccchhhhceeeccCC-----CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCcee
Confidence 9999999999999999999999999975 88999999999999999985 46788899999999999999999999
Q ss_pred EEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-CCceeeeeecccccccccceEEcCCccccccceeeccCCcEEee
Q 000450 685 ACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA-SHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQS 763 (1496)
Q Consensus 685 ~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~-a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W 763 (1496)
+||++| +.|+|||+.+++.-....-++ +.+-.+.+-|+-..+. ++..+ .-|..+++|
T Consensus 236 ATGGRD--------K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hL-----------Atcsm---v~dtsV~VW 293 (839)
T KOG0269|consen 236 ATGGRD--------KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHL-----------ATCSM---VVDTSVHVW 293 (839)
T ss_pred eecCCC--------ccEEEEeccCCCccceeEEeecceeeeeeeccCccchh-----------hhhhc---cccceEEEE
Confidence 999999 999999998765533333233 3455555654333221 11111 227789999
Q ss_pred cc
Q 000450 764 QI 765 (1496)
Q Consensus 764 ~l 765 (1496)
++
T Consensus 294 Dv 295 (839)
T KOG0269|consen 294 DV 295 (839)
T ss_pred ee
Confidence 96
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-15 Score=166.28 Aligned_cols=206 Identities=18% Similarity=0.191 Sum_probs=157.6
Q ss_pred cccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCC
Q 000450 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1496)
Q Consensus 503 ~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~ 582 (1496)
..+..|...+++++ .+-.++|+|+.|-+|+|++.. .......+..|.+.|++|.|.+..
T Consensus 37 F~~~aH~~sitavA------Vs~~~~aSGssDetI~IYDm~---------------k~~qlg~ll~HagsitaL~F~~~~ 95 (362)
T KOG0294|consen 37 FAFSAHAGSITALA------VSGPYVASGSSDETIHIYDMR---------------KRKQLGILLSHAGSITALKFYPPL 95 (362)
T ss_pred ccccccccceeEEE------ecceeEeccCCCCcEEEEecc---------------chhhhcceeccccceEEEEecCCc
Confidence 34678999999998 333479999999999994332 345567788899999999998762
Q ss_pred CCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000450 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1496)
Q Consensus 583 ~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l 662 (1496)
...+|+||+.||.|.+|+.....++..+++|.+.|+.++++|. +++.++++.|+.+++||+-+|+.-
T Consensus 96 -------S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS------~KLALsVg~D~~lr~WNLV~Gr~a 162 (362)
T KOG0294|consen 96 -------SKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS------GKLALSVGGDQVLRTWNLVRGRVA 162 (362)
T ss_pred -------chhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCC------CceEEEEcCCceeeeehhhcCccc
Confidence 1349999999999999999999999999999999999999998 899999999999999999887643
Q ss_pred EEecCCCCCcEEEEEcCCCC---------------------------------------EEEEEEcCCCCCCCCCCEEEE
Q 000450 663 RMFPGHPNYPAKVVWDCPRG---------------------------------------YIACLCRDHSRTSDAVDVLFI 703 (1496)
Q Consensus 663 ~~~~gH~~~V~~V~~spdg~---------------------------------------~L~tgs~D~sg~~D~dg~V~V 703 (1496)
..++- ....+-|.|+|.|. +|++|..| +.|.+
T Consensus 163 ~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~--------~~i~~ 233 (362)
T KOG0294|consen 163 FVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDN--------EWISL 233 (362)
T ss_pred eeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCC--------ceEEE
Confidence 33321 11122355555554 44444444 88999
Q ss_pred EECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccc
Q 000450 704 WDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1496)
Q Consensus 704 WDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~ 766 (1496)
||...+.+...+.+|.+++-...+.. +. ....++++++||.|++|++.
T Consensus 234 ~D~ds~~~~~~~~AH~~RVK~i~~~~----~~-----------~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 234 KDTDSDTPLTEFLAHENRVKDIASYT----NP-----------EHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred eccCCCccceeeecchhheeeeEEEe----cC-----------CceEEEEeccCceEEEEEcc
Confidence 99888888888889988877653331 00 11346678889999999973
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.2e-16 Score=170.10 Aligned_cols=222 Identities=16% Similarity=0.242 Sum_probs=169.3
Q ss_pred CcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCC--CccccC-CcceEEEEecCCccEEEE
Q 000450 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPG--ASLKVN-SHVSRQYFLGHTGAVLCL 576 (1496)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~--~~~d~~-s~~~~~~l~gH~~~V~~L 576 (1496)
.+...+..|...+.+-+|.++.. .+++|+.|-+|+|..-..+..-..+. ..-+.+ ....+++|+.|...|++|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~----lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l 178 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGS----LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL 178 (430)
T ss_pred cceEEEeecccceeeeeeCCCCc----EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce
Confidence 34455788999999988666655 89999999999996543221110000 011122 236789999999999999
Q ss_pred EEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEc--ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEE
Q 000450 577 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 654 (1496)
Q Consensus 577 a~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~--~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lW 654 (1496)
.|||. ...|+||+.|++|+++|+......+-|+ ....+|.++.|+|. |.+++.|..-.++++|
T Consensus 179 ~FHPr---------e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs------GefllvgTdHp~~rlY 243 (430)
T KOG0640|consen 179 DFHPR---------ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS------GEFLLVGTDHPTLRLY 243 (430)
T ss_pred eecch---------hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC------CceEEEecCCCceeEE
Confidence 99997 7999999999999999997654333222 34668999999998 9999999999999999
Q ss_pred ECCCCcEEEEe---cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE-eCCCCCceee-eeec
Q 000450 655 SLETLRVERMF---PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL-RGTASHSMFD-HFCK 729 (1496)
Q Consensus 655 dl~~~~~l~~~---~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l-~gh~a~vi~~-~~~~ 729 (1496)
|+.+.+|.... .+|.+.|++|.+++.+++-++++.| |.|++||--++++++++ +.|.+..++. .|.
T Consensus 244 dv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkD--------G~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft- 314 (430)
T KOG0640|consen 244 DVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKD--------GAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT- 314 (430)
T ss_pred eccceeEeeecCcccccccceeEEEecCCccEEEEeccC--------CcEEeeccccHHHHHHHHhhcCCceeeeEEEc-
Confidence 99999987665 3688999999999999999999999 99999999999998877 4566666553 233
Q ss_pred ccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 730 GISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 730 ~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
-+|.+.. +...|..++.|.+
T Consensus 315 -----------kn~kyiL-----sSG~DS~vkLWEi 334 (430)
T KOG0640|consen 315 -----------KNGKYIL-----SSGKDSTVKLWEI 334 (430)
T ss_pred -----------cCCeEEe-----ecCCcceeeeeee
Confidence 1244433 3334889999987
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-14 Score=158.55 Aligned_cols=85 Identities=22% Similarity=0.404 Sum_probs=69.6
Q ss_pred CCCCCceEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccc
Q 000450 12 GTPPSHRVTATSALT-QPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAEN 90 (1496)
Q Consensus 12 ~~~psh~Vtava~Sp-Dg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~ 90 (1496)
+.||...|++++||| ...+++.|+-||+|++|++.. .+...++ ....|.++|-+++
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~--~g~~~~k-a~~~~~~PvL~v~-------------------- 79 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQN--SGQLVPK-AQQSHDGPVLDVC-------------------- 79 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEec--CCcccch-hhhccCCCeEEEE--------------------
Confidence 457889999999999 456677999999999999984 2334443 3467999999998
Q ss_pred cccccccccCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 000450 91 SSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRR 126 (1496)
Q Consensus 91 ~~~~~g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~ 126 (1496)
++.|+..+++|+.|+.+++||+.+|+...
T Consensus 80 -------WsddgskVf~g~~Dk~~k~wDL~S~Q~~~ 108 (347)
T KOG0647|consen 80 -------WSDDGSKVFSGGCDKQAKLWDLASGQVSQ 108 (347)
T ss_pred -------EccCCceEEeeccCCceEEEEccCCCeee
Confidence 57778889999999999999999986543
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=174.36 Aligned_cols=192 Identities=18% Similarity=0.244 Sum_probs=154.6
Q ss_pred eeecccccCccccccccCCCCC---CCcccccccCCccEEEEEeeccccccCC---EEEEEEcCCcEEEEEecccccCCC
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQA---GDGRDDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNS 550 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~---~~~~~~~~~h~~~Vts~~~~s~~~f~P~---~lv~Gs~dG~I~V~~~~~l~~~d~ 550 (1496)
.+..++.++.+++||+...... ......+.+|...|.-++ |+|. .+.+.+.|+.+.| ||+..
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~------~h~~h~~lF~sv~dd~~L~i--wD~R~---- 259 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVA------WHPLHEDLFGSVGDDGKLMI--WDTRS---- 259 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhh------ccccchhhheeecCCCeEEE--EEcCC----
Confidence 4666777888999998765442 244556788988888876 6653 7888899999999 55211
Q ss_pred CCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC-ceEEEEcccCCCEEEEEE
Q 000450 551 PGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIIL 629 (1496)
Q Consensus 551 ~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg-~~l~~~~~H~~~V~~l~~ 629 (1496)
+ +.++.....+|++.|+|++|+|- ++.+||+||.|++|++||+++. +++++|.+|...|.+|.|
T Consensus 260 ----~---~~~~~~~~~ah~~~vn~~~fnp~--------~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~W 324 (422)
T KOG0264|consen 260 ----N---TSKPSHSVKAHSAEVNCVAFNPF--------NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEW 324 (422)
T ss_pred ----C---CCCCcccccccCCceeEEEeCCC--------CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEe
Confidence 1 34566677899999999999996 3789999999999999999975 478999999999999999
Q ss_pred CCCCCCCCCCCEEEEEeCCCcEEEEECCCC--------------cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCC
Q 000450 630 SPPQTEHPWSDCFLSVGEDFSVALASLETL--------------RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTS 695 (1496)
Q Consensus 630 sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~--------------~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~ 695 (1496)
+|.. ..+|+|.+.|+.+.+||+..- +.+.+-.||.+.|..+.|+|...++++.-.+
T Consensus 325 SPh~-----etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae----- 394 (422)
T KOG0264|consen 325 SPHN-----ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE----- 394 (422)
T ss_pred CCCC-----CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC-----
Confidence 9985 679999999999999999631 2346667999999999999999987765554
Q ss_pred CCCCEEEEEECC
Q 000450 696 DAVDVLFIWDVK 707 (1496)
Q Consensus 696 D~dg~V~VWDl~ 707 (1496)
|+.+.||++.
T Consensus 395 --DN~LqIW~~s 404 (422)
T KOG0264|consen 395 --DNILQIWQMA 404 (422)
T ss_pred --CceEEEeecc
Confidence 3999999984
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-16 Score=189.44 Aligned_cols=183 Identities=21% Similarity=0.242 Sum_probs=163.9
Q ss_pred ccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000450 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1496)
Q Consensus 504 ~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~ 583 (1496)
.+.+|...|.++.+..... .++.|+.+|+|++ || .+..+.+++|.||...+..+.|+|-
T Consensus 65 S~~~hespIeSl~f~~~E~----LlaagsasgtiK~--wD-------------leeAk~vrtLtgh~~~~~sv~f~P~-- 123 (825)
T KOG0267|consen 65 SLTGHESPIESLTFDTSER----LLAAGSASGTIKV--WD-------------LEEAKIVRTLTGHLLNITSVDFHPY-- 123 (825)
T ss_pred eeeccCCcceeeecCcchh----hhcccccCCceee--ee-------------hhhhhhhhhhhccccCcceeeeccc--
Confidence 4789999999998544444 8899999999999 44 4455778899999999999999995
Q ss_pred CcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 000450 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 663 (1496)
Q Consensus 584 ~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~ 663 (1496)
+.+.++|+.|+.+++||++...|.+.+.+|...|..+.|+|+ |.+++++++|.++++||+..|+...
T Consensus 124 -------~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~------Gr~v~~g~ed~tvki~d~~agk~~~ 190 (825)
T KOG0267|consen 124 -------GEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPD------GRWVASGGEDNTVKIWDLTAGKLSK 190 (825)
T ss_pred -------eEEeccccccccceehhhhccCceeeecCCcceeEEEeecCC------CceeeccCCcceeeeeccccccccc
Confidence 888999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000450 664 MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1496)
Q Consensus 664 ~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~ 728 (1496)
.|.+|...+..+.|+|..-.++.|+.| ++|++||++|.+.+-........+.+..|.
T Consensus 191 ef~~~e~~v~sle~hp~e~Lla~Gs~d--------~tv~f~dletfe~I~s~~~~~~~v~~~~fn 247 (825)
T KOG0267|consen 191 EFKSHEGKVQSLEFHPLEVLLAPGSSD--------RTVRFWDLETFEVISSGKPETDGVRSLAFN 247 (825)
T ss_pred ccccccccccccccCchhhhhccCCCC--------ceeeeeccceeEEeeccCCccCCceeeeec
Confidence 999999999999999999999999888 999999999998887777766666666555
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.2e-15 Score=168.28 Aligned_cols=191 Identities=17% Similarity=0.144 Sum_probs=158.7
Q ss_pred ccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcce
Q 000450 483 CQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS 562 (1496)
Q Consensus 483 ~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~ 562 (1496)
.+..+-++|... .+...++.||...|+++.+.++.. .++.++.|..|+||.-. ....
T Consensus 239 ~d~~av~~d~~s----~q~l~~~~Gh~kki~~v~~~~~~~----~v~~aSad~~i~vws~~---------------~~s~ 295 (506)
T KOG0289|consen 239 EDKTAVLFDKPS----NQILATLKGHTKKITSVKFHKDLD----TVITASADEIIRVWSVP---------------LSSE 295 (506)
T ss_pred CCCceEEEecch----hhhhhhccCcceEEEEEEeccchh----heeecCCcceEEeeccc---------------cccC
Confidence 334455555433 477888999999999998333332 78899999999994322 1224
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccC--CCEEEEEECCCCCCCCCCC
Q 000450 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHV--APVRQIILSPPQTEHPWSD 640 (1496)
Q Consensus 563 ~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~--~~V~~l~~sPd~~~~~~g~ 640 (1496)
......|.++|+.+..+|. +.+|+++++|++..+-|+++|.++......+ -.+++..|+|| |.
T Consensus 296 ~~~~~~h~~~V~~ls~h~t---------geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpD------gL 360 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLSLHPT---------GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPD------GL 360 (506)
T ss_pred ccccccccccceeeeeccC---------CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCC------ce
Confidence 4566789999999999997 8999999999999999999999887766532 24899999999 99
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCC
Q 000450 641 CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1496)
Q Consensus 641 ~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~ 719 (1496)
+|.+|..|+.|++||+.++..+..|++|.++|..|+|+.+|-||++++.| +.|++||++.-+...++.-..
T Consensus 361 ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add--------~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 361 IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADD--------GSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecC--------CeEEEEEehhhcccceeeccc
Confidence 99999999999999999999999999999999999999999999999999 899999999877777666544
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.1e-16 Score=166.15 Aligned_cols=208 Identities=19% Similarity=0.193 Sum_probs=164.8
Q ss_pred CCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEE
Q 000450 498 AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLA 577 (1496)
Q Consensus 498 ~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La 577 (1496)
.|..+.+|.+|.+.|++..+..... +.++++.|-+-+| |+ .-++..+..| .|...|.+++
T Consensus 48 tgdwigtfeghkgavw~~~l~~na~----~aasaaadftakv--w~-------------a~tgdelhsf-~hkhivk~~a 107 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKNAT----RAASAAADFTAKV--WD-------------AVTGDELHSF-EHKHIVKAVA 107 (334)
T ss_pred CCCcEEeeeccCcceeeeecCchhh----hhhhhcccchhhh--hh-------------hhhhhhhhhh-hhhheeeeEE
Confidence 3578899999999999976555544 6778888888777 44 4455545544 4888999999
Q ss_pred EecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc-eEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEEC
Q 000450 578 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1496)
Q Consensus 578 ~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~-~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl 656 (1496)
|+.| .+.|++|+.+..+|++|++..+ +...+.+|.+.|..+.|... .++|+|.+.|++||+||.
T Consensus 108 f~~d---------s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e------D~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 108 FSQD---------SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE------DKCILSSADDKTVRLWDH 172 (334)
T ss_pred eccc---------chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc------CceEEeeccCCceEEEEe
Confidence 9997 7899999999999999998765 56889999999999999987 789999999999999999
Q ss_pred CCCcEEEEecC----------CC-----------------------------CCcEEEEEcCCCCEEEEEEcCCCCCCCC
Q 000450 657 ETLRVERMFPG----------HP-----------------------------NYPAKVVWDCPRGYIACLCRDHSRTSDA 697 (1496)
Q Consensus 657 ~~~~~l~~~~g----------H~-----------------------------~~V~~V~~spdg~~L~tgs~D~sg~~D~ 697 (1496)
+++..++++.- |. ..|.+...+|+..++++|+.|
T Consensus 173 rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged------- 245 (334)
T KOG0278|consen 173 RTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGED------- 245 (334)
T ss_pred ccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcc-------
Confidence 99987766531 11 124445567777777787777
Q ss_pred CCEEEEEECCCCeEEEEE-eCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 698 VDVLFIWDVKTGARERVL-RGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 698 dg~V~VWDl~tg~~~~~l-~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
..++.||..||+.+-.+ .||-+++.++.|.|. |..-.+++ +||++|+|+.
T Consensus 246 -~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd------------GE~yAsGS-----EDGTirlWQt 296 (334)
T KOG0278|consen 246 -FKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD------------GELYASGS-----EDGTIRLWQT 296 (334)
T ss_pred -eEEEEEeccCCceeeecccCCCCceEEEEECCC------------CceeeccC-----CCceEEEEEe
Confidence 99999999999988775 999999999988852 33333333 4999999985
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=165.80 Aligned_cols=177 Identities=16% Similarity=0.266 Sum_probs=148.9
Q ss_pred CcccccccCCccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEE
Q 000450 500 DGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLA 577 (1496)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~~s~~~f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La 577 (1496)
..+.++..|.+.|+.+. |+|. .|++|+.|++|+++++.. . .. .+..+.+. ...+|.++.
T Consensus 163 PvIRTlYDH~devn~l~------FHPre~ILiS~srD~tvKlFDfsK--~--------sa--KrA~K~~q-d~~~vrsiS 223 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLD------FHPRETILISGSRDNTVKLFDFSK--T--------SA--KRAFKVFQ-DTEPVRSIS 223 (430)
T ss_pred ceEeehhhccCccccee------ecchhheEEeccCCCeEEEEeccc--H--------HH--HHHHHHhh-ccceeeeEe
Confidence 46778889999999998 7775 899999999999955541 0 00 01122222 346799999
Q ss_pred EecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEE---cccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEE
Q 000450 578 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM---HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 654 (1496)
Q Consensus 578 ~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~---~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lW 654 (1496)
|||. |.+|+.|....++++||+++.++...- ..|++.|++|.+++. +++.++++.||.|+||
T Consensus 224 fHPs---------GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t------~~lYvTaSkDG~Iklw 288 (430)
T KOG0640|consen 224 FHPS---------GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSST------GSLYVTASKDGAIKLW 288 (430)
T ss_pred ecCC---------CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCC------ccEEEEeccCCcEEee
Confidence 9996 899999999999999999998876443 469999999999998 9999999999999999
Q ss_pred ECCCCcEEEEec-CCCC-CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCC
Q 000450 655 SLETLRVERMFP-GHPN-YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1496)
Q Consensus 655 dl~~~~~l~~~~-gH~~-~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh 718 (1496)
|--.++|+.++. .|.+ .|.+..|+.+++|+++.+.| ..|++|++.||+++.++.|-
T Consensus 289 DGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D--------S~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 289 DGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD--------STVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred ccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc--------ceeeeeeecCCceEEEEecC
Confidence 999999999884 4654 78999999999999999998 99999999999999999885
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-15 Score=160.54 Aligned_cols=198 Identities=18% Similarity=0.226 Sum_probs=157.6
Q ss_pred ccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEE-ecCCCCcccCcCCCEEEEEeCCC
Q 000450 523 YAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAA-HRMVGTAKGWSFNEVLVSGSMDC 601 (1496)
Q Consensus 523 f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~-spd~~~~~~~~~~~~L~SGs~Dg 601 (1496)
|...+|+++++|++|+|+.-. . -...+.+..|.||.++|+.++| ||. +|.+|+|++.|+
T Consensus 21 yygkrlATcsSD~tVkIf~v~--~----------n~~s~ll~~L~Gh~GPVwqv~wahPk--------~G~iLAScsYDg 80 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVR--N----------NGQSKLLAELTGHSGPVWKVAWAHPK--------FGTILASCSYDG 80 (299)
T ss_pred hhcceeeeecCCccEEEEEEc--C----------CCCceeeeEecCCCCCeeEEeecccc--------cCcEeeEeecCc
Confidence 444499999999999994332 1 1112677889999999999999 775 599999999999
Q ss_pred cEEEEECCCCc--eEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC---cEEEEecCCCCCcEEEE
Q 000450 602 SIRIWDLGSGN--LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL---RVERMFPGHPNYPAKVV 676 (1496)
Q Consensus 602 tV~lWDl~tg~--~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~---~~l~~~~gH~~~V~~V~ 676 (1496)
.|.||.-..|+ ..+.+..|...|++|+|.|.+. |-.|++++.||.|.|.+.++. ...+....|.-.|++|+
T Consensus 81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~waphey----gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEY----GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred eEEEEecCCCchhhhhhhhhhcccceeeccccccc----ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence 99999988774 4467788999999999999742 668999999999999998754 22345567999999999
Q ss_pred EcCC---C-----------CEEEEEEcCCCCCCCCCCEEEEEECCCC--eEEEEEeCCCCCceeeeeecccccccccceE
Q 000450 677 WDCP---R-----------GYIACLCRDHSRTSDAVDVLFIWDVKTG--ARERVLRGTASHSMFDHFCKGISMNSISGSV 740 (1496)
Q Consensus 677 ~spd---g-----------~~L~tgs~D~sg~~D~dg~V~VWDl~tg--~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v 740 (1496)
|.|. | +.|++|+.| ..|+||+...+ .++++|.+|+.-+--+.+||.+.
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcD--------n~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~g-------- 220 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCD--------NLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVG-------- 220 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCc--------cceeeeecCCcchhhhhhhhhcchhhhhhhhccccC--------
Confidence 9986 4 568999988 99999999876 45788999998877777885322
Q ss_pred EcCCccccccceeeccCCcEEeecc
Q 000450 741 LNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 741 ~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
.....+.++++|+++-+|..
T Consensus 221 -----l~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 221 -----LPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred -----CCceeeEEecCCCcEEEEEe
Confidence 12334557778999999974
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=170.34 Aligned_cols=168 Identities=24% Similarity=0.297 Sum_probs=133.9
Q ss_pred CcccccccCCccEEEEEeeccccccCC---EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEE
Q 000450 500 DGRDDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCL 576 (1496)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~~s~~~f~P~---~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~L 576 (1496)
..+.++.+|.+.=.++. |+|. ++++|-.-+.|.+ |..-. ..|.+. .+.+.+|+..|-.|
T Consensus 202 ~Pl~t~~ghk~EGy~Ld------WSp~~~g~LlsGDc~~~I~l--w~~~~------g~W~vd----~~Pf~gH~~SVEDL 263 (440)
T KOG0302|consen 202 RPLFTFNGHKGEGYGLD------WSPIKTGRLLSGDCVKGIHL--WEPST------GSWKVD----QRPFTGHTKSVEDL 263 (440)
T ss_pred CceEEecccCccceeee------cccccccccccCccccceEe--eeecc------Cceeec----Cccccccccchhhh
Confidence 45667788888888887 6663 5777766677777 44211 125443 23466899999999
Q ss_pred EEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC---ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEE
Q 000450 577 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 653 (1496)
Q Consensus 577 a~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg---~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~l 653 (1496)
.|+|.+ ...|+|||.|++|+|||++.+ .++.+ +.|.+.|+.|.|+.+ -.+|++|+.||+++|
T Consensus 264 qWSptE--------~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~------~~lLasG~DdGt~~i 328 (440)
T KOG0302|consen 264 QWSPTE--------DGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRR------EPLLASGGDDGTLSI 328 (440)
T ss_pred ccCCcc--------CceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCC------cceeeecCCCceEEE
Confidence 999973 789999999999999999988 34444 889999999999987 459999999999999
Q ss_pred EECCC---CcEEEEecCCCCCcEEEEEcCCC-CEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 654 ASLET---LRVERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 654 Wdl~~---~~~l~~~~gH~~~V~~V~~spdg-~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
||++. ++++..|..|..+|++|.|+|.. ..+++++.| ..|.+||+..
T Consensus 329 wDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D--------~QitiWDlsv 379 (440)
T KOG0302|consen 329 WDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGED--------NQITIWDLSV 379 (440)
T ss_pred EEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCC--------CcEEEEEeec
Confidence 99985 56889999999999999999965 466667776 8999999853
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4e-14 Score=157.48 Aligned_cols=234 Identities=15% Similarity=0.187 Sum_probs=172.1
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEc--CCcEEEEEecccccCCCCCCcc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFF--SGEIEVIQFDLFERHNSPGASL 555 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~--dG~I~V~~~~~l~~~d~~~~~~ 555 (1496)
+.+++.+..++++|..+.+. ..++..+.-.+....+..... .++.++. |.+|+..
T Consensus 29 litss~dDsl~LYd~~~g~~----~~ti~skkyG~~~~~Fth~~~----~~i~sStk~d~tIryL--------------- 85 (311)
T KOG1446|consen 29 LITSSEDDSLRLYDSLSGKQ----VKTINSKKYGVDLACFTHHSN----TVIHSSTKEDDTIRYL--------------- 85 (311)
T ss_pred EEEecCCCeEEEEEcCCCce----eeEeecccccccEEEEecCCc----eEEEccCCCCCceEEE---------------
Confidence 44556777899999887544 333333433444555444443 7777776 7777762
Q ss_pred ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCC
Q 000450 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE 635 (1496)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~ 635 (1496)
+..+.+.++.+.||...|+.|..+|. +..++|+|.|++|++||++..++...+..-..+| ++|.|+
T Consensus 86 sl~dNkylRYF~GH~~~V~sL~~sP~---------~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~--- 151 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKKRVNSLSVSPK---------DDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPE--- 151 (311)
T ss_pred EeecCceEEEcCCCCceEEEEEecCC---------CCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCC---
Confidence 24456899999999999999999997 7999999999999999999999988887666655 678998
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCC--cEEEEecC---CCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 636 HPWSDCFLSVGEDFSVALASLETL--RVERMFPG---HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 636 ~~~g~~l~Sgs~DgsV~lWdl~~~--~~l~~~~g---H~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
|-+||.+.....|+|||++.. .+-.+|.- -....+.+.|+|||++|+.+... +.+++-|.-+|.
T Consensus 152 ---GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~--------s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 152 ---GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA--------SFIYLLDAFDGT 220 (311)
T ss_pred ---CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC--------CcEEEEEccCCc
Confidence 889999988889999999864 34455543 35578999999999999998887 899999999999
Q ss_pred EEEEEeCCCCCc-eeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccccccccccc
Q 000450 711 RERVLRGTASHS-MFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAF 774 (1496)
Q Consensus 711 ~~~~l~gh~a~v-i~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~~~~~ 774 (1496)
....+.++.... +...+| ..++ +-.+ +..+.|+++.+|+++..+.....
T Consensus 221 ~~~tfs~~~~~~~~~~~a~--ftPd--s~Fv-----------l~gs~dg~i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 221 VKSTFSGYPNAGNLPLSAT--FTPD--SKFV-----------LSGSDDGTIHVWNLETGKKVAVL 270 (311)
T ss_pred EeeeEeeccCCCCcceeEE--ECCC--CcEE-----------EEecCCCcEEEEEcCCCcEeeEe
Confidence 999999988644 112222 1111 2222 23334899999998655544333
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-14 Score=154.32 Aligned_cols=202 Identities=17% Similarity=0.203 Sum_probs=164.2
Q ss_pred cccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000450 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1496)
Q Consensus 505 ~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~ 584 (1496)
+++|..+++.+.|..+.. .|.+++.|....||. ...|+.+.++.||++.|+|+...-+
T Consensus 6 l~GHERplTqiKyN~eGD----LlFscaKD~~~~vw~---------------s~nGerlGty~GHtGavW~~Did~~--- 63 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGD----LLFSCAKDSTPTVWY---------------SLNGERLGTYDGHTGAVWCCDIDWD--- 63 (327)
T ss_pred cccCccccceEEecCCCc----EEEEecCCCCceEEE---------------ecCCceeeeecCCCceEEEEEecCC---
Confidence 578999999999777665 899999999999943 2246788999999999999999876
Q ss_pred cccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC-----CCcEEEEECC--
Q 000450 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-----DFSVALASLE-- 657 (1496)
Q Consensus 585 ~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~-----DgsV~lWdl~-- 657 (1496)
...|++|+.|.++++||+++|+++..++. ..+|..+.|+++ |++++.... -+.|.++|++
T Consensus 64 ------s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~------gn~~l~~tD~~mg~~~~v~~fdi~~~ 130 (327)
T KOG0643|consen 64 ------SKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFG------GNLILASTDKQMGYTCFVSVFDIRDD 130 (327)
T ss_pred ------cceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccC------CcEEEEEehhhcCcceEEEEEEccCC
Confidence 78999999999999999999999999975 458999999998 776655533 4688999998
Q ss_pred -----CCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC-eEEEEEeCCCCCceeeeeeccc
Q 000450 658 -----TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGI 731 (1496)
Q Consensus 658 -----~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg-~~~~~l~gh~a~vi~~~~~~~~ 731 (1496)
..++...++.+.+.++.+.|.|.+++|++|..| |.|.+||+++| +.+..-.-|.+.+.-.++.+.
T Consensus 131 ~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~--------G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d- 201 (327)
T KOG0643|consen 131 SSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED--------GSISIYDARTGKELVDSDEEHSSKINDLQFSRD- 201 (327)
T ss_pred hhhhcccCceEEecCCccceeeeeecccCCEEEEecCC--------CcEEEEEcccCceeeechhhhccccccccccCC-
Confidence 456788888899999999999999999999998 99999999998 456666778875555544421
Q ss_pred ccccccceEEcCCccccccceeeccCCcEEeeccc
Q 000450 732 SMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1496)
Q Consensus 732 ~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~ 766 (1496)
. ..++..++|.+-+.|+..
T Consensus 202 -----~-----------T~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 202 -----R-----------TYFITGSKDTTAKLVDVR 220 (327)
T ss_pred -----c-----------ceEEecccCccceeeecc
Confidence 1 123445568888888753
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-15 Score=160.20 Aligned_cols=189 Identities=20% Similarity=0.274 Sum_probs=151.2
Q ss_pred cccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcc
Q 000450 482 FCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV 561 (1496)
Q Consensus 482 ~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~ 561 (1496)
+.+=+.++||.... ....+| .|...|.+++|..+.. +|++|+.+.-++|++.+.. ..
T Consensus 78 aadftakvw~a~tg----delhsf-~hkhivk~~af~~ds~----~lltgg~ekllrvfdln~p--------------~A 134 (334)
T KOG0278|consen 78 AADFTAKVWDAVTG----DELHSF-EHKHIVKAVAFSQDSN----YLLTGGQEKLLRVFDLNRP--------------KA 134 (334)
T ss_pred cccchhhhhhhhhh----hhhhhh-hhhheeeeEEecccch----hhhccchHHHhhhhhccCC--------------CC
Confidence 44557789998764 445554 4788899999777776 8999999999999544311 12
Q ss_pred eEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCC------
Q 000450 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE------ 635 (1496)
Q Consensus 562 ~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~------ 635 (1496)
+...+.||++.|..+.|... .+.++|.+.|++||+||.++|+..+++.- ..+|+++.+++++.+
T Consensus 135 pp~E~~ghtg~Ir~v~wc~e---------D~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~g 204 (334)
T KOG0278|consen 135 PPKEISGHTGGIRTVLWCHE---------DKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYG 204 (334)
T ss_pred CchhhcCCCCcceeEEEecc---------CceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecC
Confidence 34567899999999999764 57788889999999999999998877643 335666666665322
Q ss_pred ----------------------------CCCCCEEEEEeCCCcEEEEECCCCcEEEEe-cCCCCCcEEEEEcCCCCEEEE
Q 000450 636 ----------------------------HPWSDCFLSVGEDFSVALASLETLRVERMF-PGHPNYPAKVVWDCPRGYIAC 686 (1496)
Q Consensus 636 ----------------------------~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~-~gH~~~V~~V~~spdg~~L~t 686 (1496)
+|....+++|++|..+..||..++..+..+ .||.++|.||.|+|||..-++
T Consensus 205 ssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAs 284 (334)
T KOG0278|consen 205 SSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYAS 284 (334)
T ss_pred ceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeec
Confidence 466789999999999999999999998886 899999999999999999999
Q ss_pred EEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 687 LCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 687 gs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
|+.| |+|++|++..++.
T Consensus 285 GSED--------GTirlWQt~~~~~ 301 (334)
T KOG0278|consen 285 GSED--------GTIRLWQTTPGKT 301 (334)
T ss_pred cCCC--------ceEEEEEecCCCc
Confidence 9999 9999999876654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=182.96 Aligned_cols=190 Identities=23% Similarity=0.287 Sum_probs=158.1
Q ss_pred CccEEEEEeeccccccCCEEEEEE--cCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcc
Q 000450 509 EKIVSSSMVISESFYAPYAIVYGF--FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 586 (1496)
Q Consensus 509 ~~~Vts~~~~s~~~f~P~~lv~Gs--~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~ 586 (1496)
...|.++.+.++.. ++++|+ .||.++||+-+.+... ...++..-.+.+.+...|.+.|+|+.|+||
T Consensus 13 ~~~IfSIdv~pdg~----~~aTgGq~~d~~~~iW~~~~vl~~---~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d----- 80 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGV----KFATGGQVLDGGIVIWSQDPVLDE---KEEKNENLPKHLCTMDDHDGSVNCVRFSPD----- 80 (942)
T ss_pred CeeEEEEEecCCce----eEecCCccccccceeeccccccch---hhhhhcccchhheeeccccCceeEEEECCC-----
Confidence 34577887555554 899999 8999999765533221 111222223556778899999999999998
Q ss_pred cCcCCCEEEEEeCCCcEEEEECCC------------------CceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCC
Q 000450 587 GWSFNEVLVSGSMDCSIRIWDLGS------------------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1496)
Q Consensus 587 ~~~~~~~L~SGs~DgtV~lWDl~t------------------g~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~D 648 (1496)
+++||+||+|+.|.+|+... .++..++.+|.+.|..+.|+|+ +.+++|++.|
T Consensus 81 ----G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~------~~~lvS~s~D 150 (942)
T KOG0973|consen 81 ----GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD------DSLLVSVSLD 150 (942)
T ss_pred ----CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC------ccEEEEeccc
Confidence 99999999999999999872 1367889999999999999999 8999999999
Q ss_pred CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000450 649 FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1496)
Q Consensus 649 gsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~ 728 (1496)
++|.+||.++.+++..+.+|.+.|..+.|.|-|+|+++-+.| ++|+||++.+...++.++++-.+.....+.
T Consensus 151 nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdD--------rtikvwrt~dw~i~k~It~pf~~~~~~T~f 222 (942)
T KOG0973|consen 151 NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDD--------RTLKVWRTSDWGIEKSITKPFEESPLTTFF 222 (942)
T ss_pred ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCC--------ceEEEEEcccceeeEeeccchhhCCCccee
Confidence 999999999999999999999999999999999999999998 999999988888999999988766654443
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-14 Score=157.59 Aligned_cols=210 Identities=12% Similarity=0.208 Sum_probs=164.0
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEE----ecccccC-----
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQ----FDLFERH----- 548 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~----~~~l~~~----- 548 (1496)
+.+.+.+-+.++|.++.. .+..++.+|.+.|+++.+.+... .+++|+.|++-.||. |..-...
T Consensus 163 ~gtASADhTA~iWs~Esg----~CL~~Y~GH~GSVNsikfh~s~~----L~lTaSGD~taHIW~~av~~~vP~~~a~~~h 234 (481)
T KOG0300|consen 163 CGTASADHTARIWSLESG----ACLATYTGHTGSVNSIKFHNSGL----LLLTASGDETAHIWKAAVNWEVPSNNAPSDH 234 (481)
T ss_pred eeecccccceeEEeeccc----cceeeecccccceeeEEeccccc----eEEEccCCcchHHHHHhhcCcCCCCCCCCCC
Confidence 445667788999999874 66778899999999998443333 788999999999975 3221110
Q ss_pred ---------CCCCCccc---c-C---CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc
Q 000450 549 ---------NSPGASLK---V-N---SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN 612 (1496)
Q Consensus 549 ---------d~~~~~~d---~-~---s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~ 612 (1496)
|.+....+ . + -..++..|.||.+.|.+..|-.. ++.++++|.|.+..+||+++|+
T Consensus 235 SsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g---------g~Q~vTaSWDRTAnlwDVEtge 305 (481)
T KOG0300|consen 235 SSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG---------GQQMVTASWDRTANLWDVETGE 305 (481)
T ss_pred CchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC---------cceeeeeeccccceeeeeccCc
Confidence 11111001 0 0 12356678999999999999764 8999999999999999999999
Q ss_pred eEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC-CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCC
Q 000450 613 LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDH 691 (1496)
Q Consensus 613 ~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~-~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~ 691 (1496)
.++.+.+|....+.+.-+|. .+++++.+.|.+.++||.+. -..+..|.||...|+++.|.-|++ +++|+.|
T Consensus 306 ~v~~LtGHd~ELtHcstHpt------QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDD- 377 (481)
T KOG0300|consen 306 VVNILTGHDSELTHCSTHPT------QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDD- 377 (481)
T ss_pred eeccccCcchhccccccCCc------ceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCCC-
Confidence 99999999999999988887 89999999999999999985 356788999999999999987764 6777777
Q ss_pred CCCCCCCCEEEEEECCCCe-EEEEEeCCC
Q 000450 692 SRTSDAVDVLFIWDVKTGA-RERVLRGTA 719 (1496)
Q Consensus 692 sg~~D~dg~V~VWDl~tg~-~~~~l~gh~ 719 (1496)
.+|+|||+++.+ .+.++.-..
T Consensus 378 -------rTvKvWdLrNMRsplATIRtdS 399 (481)
T KOG0300|consen 378 -------RTVKVWDLRNMRSPLATIRTDS 399 (481)
T ss_pred -------ceEEEeeeccccCcceeeecCC
Confidence 999999998753 456665433
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-11 Score=141.31 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=102.8
Q ss_pred EEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEE
Q 000450 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFL 643 (1496)
Q Consensus 564 ~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~ 643 (1496)
....||....+.++.+|+ ...+++++.|+.|++|+ ..+++.+.. -..++.++.|+|. | .++
T Consensus 362 ~~v~gh~delwgla~hps---------~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhps------g-~va 422 (626)
T KOG2106|consen 362 LTVQGHGDELWGLATHPS---------KNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPS------G-VVA 422 (626)
T ss_pred EEEEecccceeeEEcCCC---------hhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCc------c-eEE
Confidence 455789999999999997 78999999999999999 444443332 2468899999998 7 999
Q ss_pred EEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC-CeEEEEEeCCC
Q 000450 644 SVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTA 719 (1496)
Q Consensus 644 Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t-g~~~~~l~gh~ 719 (1496)
.|...|...+.|.++...+..-.. ..++++|+|+|+|.+|++|+.| +.||||-+.. |.....+.-|.
T Consensus 423 ~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d--------~~iyiy~Vs~~g~~y~r~~k~~ 490 (626)
T KOG2106|consen 423 VGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHD--------NHIYIYRVSANGRKYSRVGKCS 490 (626)
T ss_pred EeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCC--------CeEEEEEECCCCcEEEEeeeec
Confidence 999999999999998555544333 7789999999999999999999 9999998854 55444443333
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.9e-14 Score=162.37 Aligned_cols=205 Identities=14% Similarity=0.076 Sum_probs=147.3
Q ss_pred eecccccCccccccccCCCCCCCccccc--ccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDF--VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~--~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~ 555 (1496)
+.+++.++++++||..+.+...+.+.+- .+....+++.++.++.. .++.|+.||+|.+|.... |
T Consensus 284 FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~----~iAagc~DGSIQ~W~~~~----------~ 349 (641)
T KOG0772|consen 284 FLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK----LIAAGCLDGSIQIWDKGS----------R 349 (641)
T ss_pred eEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc----hhhhcccCCceeeeecCC----------c
Confidence 4455567788888887766543333222 23334566766444444 899999999999944321 1
Q ss_pred ccCCcceEEEEecCCc--cEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC-ceEEEEccc--CCCEEEEEEC
Q 000450 556 KVNSHVSRQYFLGHTG--AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHHH--VAPVRQIILS 630 (1496)
Q Consensus 556 d~~s~~~~~~l~gH~~--~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg-~~l~~~~~H--~~~V~~l~~s 630 (1496)
-+ ......-..|.. .|+||.|++| +++|+|-|.|.++++||++.. +++.++.+- .-+-+.+.|+
T Consensus 350 ~v--~p~~~vk~AH~~g~~Itsi~FS~d---------g~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FS 418 (641)
T KOG0772|consen 350 TV--RPVMKVKDAHLPGQDITSISFSYD---------GNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFS 418 (641)
T ss_pred cc--ccceEeeeccCCCCceeEEEeccc---------cchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccC
Confidence 12 122344467887 8999999998 899999999999999999865 455555442 2244678899
Q ss_pred CCCCCCCCCCEEEEEeC------CCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEE
Q 000450 631 PPQTEHPWSDCFLSVGE------DFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1496)
Q Consensus 631 Pd~~~~~~g~~l~Sgs~------DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VW 704 (1496)
|+ .+++++|.. -+++.+||-.+...++.+.-....|..+.|+|-=+.|++|+.| |+++||
T Consensus 419 Pd------~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgd--------G~~~vy 484 (641)
T KOG0772|consen 419 PD------DKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGD--------GTAHVY 484 (641)
T ss_pred CC------ceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCC--------CceEEE
Confidence 99 788988753 5789999999999998887778889999999998899999988 999986
Q ss_pred ECC----CCeEEEEEeCCCCC
Q 000450 705 DVK----TGARERVLRGTASH 721 (1496)
Q Consensus 705 Dl~----tg~~~~~l~gh~a~ 721 (1496)
-=. .|..+.+...|...
T Consensus 485 Ydp~~S~RGak~cv~k~~rkk 505 (641)
T KOG0772|consen 485 YDPNESIRGAKLCVVKPPRKK 505 (641)
T ss_pred ECccccccchhheeecCcccc
Confidence 332 25556666665543
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=156.58 Aligned_cols=174 Identities=21% Similarity=0.238 Sum_probs=147.4
Q ss_pred ccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000450 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1496)
Q Consensus 504 ~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~ 583 (1496)
.+++|...|.++++..+.. ++++|+.|+++.||+.+.. ........+||++.|-.++|+|.+
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~----~lasgs~dktv~v~n~e~~-------------r~~~~~~~~gh~~svdql~w~~~~- 76 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT----KLASGSFDKTVSVWNLERD-------------RFRKELVYRGHTDSVDQLCWDPKH- 76 (313)
T ss_pred HhhhhhhcceEEEEcccCc----eeeecccCCceEEEEecch-------------hhhhhhcccCCCcchhhheeCCCC-
Confidence 3577888999999888887 9999999999999665521 112223467999999999999873
Q ss_pred CcccCcCCCEEEEEeCCCcEEEEECCCCceEE------------------------------------------------
Q 000450 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLIT------------------------------------------------ 615 (1496)
Q Consensus 584 ~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~------------------------------------------------ 615 (1496)
..++++++.|.+|++||++.+++.+
T Consensus 77 -------~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e 149 (313)
T KOG1407|consen 77 -------PDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFE 149 (313)
T ss_pred -------CcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccce
Confidence 7899999999999999998654332
Q ss_pred ----------------------------------EEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcE
Q 000450 616 ----------------------------------VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 661 (1496)
Q Consensus 616 ----------------------------------~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~ 661 (1496)
.++.|.....||.|+|+ |++|++|+.|..|-|||++..-|
T Consensus 150 ~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~------GryfA~GsADAlvSLWD~~ELiC 223 (313)
T KOG1407|consen 150 VNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD------GRYFATGSADALVSLWDVDELIC 223 (313)
T ss_pred eeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCC------CceEeeccccceeeccChhHhhh
Confidence 34567777788888888 99999999999999999999999
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 662 ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 662 l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
++.++.+.-+|..+.|+.||++|++++.| ..|-|=+++||..+..+.
T Consensus 224 ~R~isRldwpVRTlSFS~dg~~lASaSED--------h~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 224 ERCISRLDWPVRTLSFSHDGRMLASASED--------HFIDIAEVETGDRVWEIP 270 (313)
T ss_pred heeeccccCceEEEEeccCcceeeccCcc--------ceEEeEecccCCeEEEee
Confidence 99999999999999999999999999999 889999999998877764
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-11 Score=147.90 Aligned_cols=150 Identities=15% Similarity=0.017 Sum_probs=97.1
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCccccccccccccccc
Q 000450 98 SSLDNGALISACTDGVLCVWSRSSGHCRRR-RKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLV 176 (1496)
Q Consensus 98 ~s~d~~~LaSas~DG~l~VWdv~~G~ci~~-~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~~ 176 (1496)
++.+...||-+=+||.|.+|++..+-+.+. ...| ......-..+.+.+||+.+|..
T Consensus 33 ~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~--~drsIE~L~W~e~~RLFS~g~s--------------------- 89 (691)
T KOG2048|consen 33 YSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGP--EDRSIESLAWAEGGRLFSSGLS--------------------- 89 (691)
T ss_pred EeccCCceeeeccCCcEEEEccCCCceeeEEEecC--CCCceeeEEEccCCeEEeecCC---------------------
Confidence 466666799999999999999998755443 3332 1222333456688999998876
Q ss_pred ccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCccccc
Q 000450 177 SEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDRE 256 (1496)
Q Consensus 177 ~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~~~ 256 (1496)
+.|.-||+.+++.+...-. ..+.|..+++.|.. ..+.+++.||.+...++..+..
T Consensus 90 -------------g~i~EwDl~~lk~~~~~d~---~gg~IWsiai~p~~-----~~l~IgcddGvl~~~s~~p~~I---- 144 (691)
T KOG2048|consen 90 -------------GSITEWDLHTLKQKYNIDS---NGGAIWSIAINPEN-----TILAIGCDDGVLYDFSIGPDKI---- 144 (691)
T ss_pred -------------ceEEEEecccCceeEEecC---CCcceeEEEeCCcc-----ceEEeecCCceEEEEecCCceE----
Confidence 8999999999999888765 33558999987432 4477778999777776665420
Q ss_pred cCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeEEEEEcCC
Q 000450 257 EGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGS 308 (1496)
Q Consensus 257 ~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~~~l~d~ 308 (1496)
+.++. +.-..+.+-.|++.+++..++.++.++. ++.||.
T Consensus 145 ------~~~r~------l~rq~sRvLslsw~~~~~~i~~Gs~Dg~-Iriwd~ 183 (691)
T KOG2048|consen 145 ------TYKRS------LMRQKSRVLSLSWNPTGTKIAGGSIDGV-IRIWDV 183 (691)
T ss_pred ------EEEee------cccccceEEEEEecCCccEEEecccCce-EEEEEc
Confidence 01000 1101133455666666777777766662 334443
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-14 Score=164.42 Aligned_cols=201 Identities=18% Similarity=0.215 Sum_probs=168.2
Q ss_pred ccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCc
Q 000450 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWS 589 (1496)
Q Consensus 510 ~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~ 589 (1496)
..++++..++.. +.+.+|+.|....+++ ..+++...+|.||+..|+.+.|+++
T Consensus 220 pgi~ald~~~s~----~~ilTGG~d~~av~~d---------------~~s~q~l~~~~Gh~kki~~v~~~~~-------- 272 (506)
T KOG0289|consen 220 PGITALDIIPSS----SKILTGGEDKTAVLFD---------------KPSNQILATLKGHTKKITSVKFHKD-------- 272 (506)
T ss_pred CCeeEEeecCCC----CcceecCCCCceEEEe---------------cchhhhhhhccCcceEEEEEEeccc--------
Confidence 456666655542 2789999998888833 3455778889999999999999997
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC
Q 000450 590 FNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP 669 (1496)
Q Consensus 590 ~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~ 669 (1496)
...+++++.|..|++|.............|..+|+.+..+|. |.+|++++.|++..+.|+++++++.......
T Consensus 273 -~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~t------geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~ 345 (506)
T KOG0289|consen 273 -LDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPT------GEYLLSASNDGTWAFSDISSGSQLTVVSDET 345 (506)
T ss_pred -hhheeecCCcceEEeeccccccCccccccccccceeeeeccC------CcEEEEecCCceEEEEEccCCcEEEEEeecc
Confidence 788999999999999999888888888999999999999998 9999999999999999999999987765322
Q ss_pred --CCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCccc
Q 000450 670 --NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSV 747 (1496)
Q Consensus 670 --~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~ 747 (1496)
-.+++.+|+|||..+.+|..| |.|+|||++++..+..+.||++.+..+.|.. + |-+
T Consensus 346 s~v~~ts~~fHpDgLifgtgt~d--------~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-------N-----GY~-- 403 (506)
T KOG0289|consen 346 SDVEYTSAAFHPDGLIFGTGTPD--------GVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-------N-----GYW-- 403 (506)
T ss_pred ccceeEEeeEcCCceEEeccCCC--------ceEEEEEcCCccccccCCCCCCceeEEEecc-------C-----ceE--
Confidence 357999999999999999998 9999999999999999999999999988872 2 322
Q ss_pred cccceeeccCCcEEeecccccc
Q 000450 748 SSLLLPIHEDGTFRQSQIQNDE 769 (1496)
Q Consensus 748 s~~l~~~~~D~~ir~W~l~~~e 769 (1496)
+...+.|+.++.|+|+..+
T Consensus 404 ---Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 404 ---LATAADDGSVKLWDLRKLK 422 (506)
T ss_pred ---EEEEecCCeEEEEEehhhc
Confidence 2244457779999996554
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-14 Score=165.17 Aligned_cols=205 Identities=22% Similarity=0.248 Sum_probs=149.0
Q ss_pred CCEEEEEEcCCcEEEEEecccccCCCCCCcc------ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEe
Q 000450 525 PYAIVYGFFSGEIEVIQFDLFERHNSPGASL------KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS 598 (1496)
Q Consensus 525 P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~------d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs 598 (1496)
++++|.|+.|-.|.||.++.....-....+- ....++.-..-.||+..|..|+|+.. ....|+|||
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~--------~~nVLaSgs 263 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN--------FRNVLASGS 263 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc--------cceeEEecC
Confidence 3589999999999997665322210000000 00011111223579999999999775 478999999
Q ss_pred CCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 000450 599 MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWD 678 (1496)
Q Consensus 599 ~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~s 678 (1496)
.|.||++||+.+|++..++..|.+.|.++.|+|.. ..++++||.|++|++.|++...+....-.-.+.|..++|.
T Consensus 264 aD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-----p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~ 338 (463)
T KOG0270|consen 264 ADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYE-----PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWD 338 (463)
T ss_pred CCceEEEEEcCCCCcceehhhcCCceeEEEecCCC-----ceEEEeccccceEEeeeccCccccCceEEeccceEEEEec
Confidence 99999999999999999999999999999999986 7899999999999999998532221111234679999999
Q ss_pred CCCCEE-EEEEcCCCCCCCCCCEEEEEECCC-CeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeecc
Q 000450 679 CPRGYI-ACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHE 756 (1496)
Q Consensus 679 pdg~~L-~tgs~D~sg~~D~dg~V~VWDl~t-g~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~ 756 (1496)
|..... +++..| |+||-+|++. |+++.++..|.+.+-.+.+.. ...+.+.....
T Consensus 339 ~~se~~f~~~tdd--------G~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~----------------~~p~~l~t~s~ 394 (463)
T KOG0270|consen 339 PHSENSFFVSTDD--------GTVYYFDIRNPGKPVWTLKAHDDEISGLSVNI----------------QTPGLLSTAST 394 (463)
T ss_pred CCCceeEEEecCC--------ceEEeeecCCCCCceeEEEeccCCcceEEecC----------------CCCcceeeccc
Confidence 976644 444444 9999999987 599999999998766653331 12233344556
Q ss_pred CCcEEeeccc
Q 000450 757 DGTFRQSQIQ 766 (1496)
Q Consensus 757 D~~ir~W~l~ 766 (1496)
|+.++.|++.
T Consensus 395 d~~Vklw~~~ 404 (463)
T KOG0270|consen 395 DKVVKLWKFD 404 (463)
T ss_pred cceEEEEeec
Confidence 9999999873
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.1e-14 Score=164.54 Aligned_cols=212 Identities=17% Similarity=0.152 Sum_probs=175.0
Q ss_pred cccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCC
Q 000450 480 LTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559 (1496)
Q Consensus 480 ~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s 559 (1496)
.+...+.+.+|.+.. |.+...+.+|...||++.+..+.. .+++|+.||.|.+|....+...+ +..+
T Consensus 98 ag~i~g~lYlWelss----G~LL~v~~aHYQ~ITcL~fs~dgs----~iiTgskDg~V~vW~l~~lv~a~------~~~~ 163 (476)
T KOG0646|consen 98 AGTISGNLYLWELSS----GILLNVLSAHYQSITCLKFSDDGS----HIITGSKDGAVLVWLLTDLVSAD------NDHS 163 (476)
T ss_pred eecccCcEEEEEecc----ccHHHHHHhhccceeEEEEeCCCc----EEEecCCCccEEEEEEEeecccc------cCCC
Confidence 334567788888776 577888899999999999888877 99999999999997765444431 1224
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCC
Q 000450 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1496)
Q Consensus 560 ~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g 639 (1496)
.++...+.+|+-+|+.+...+. + -...|+|.|.|.++++||+..|.++.++. ...++.++++.|. .
T Consensus 164 ~~p~~~f~~HtlsITDl~ig~G-----g--~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpa------e 229 (476)
T KOG0646|consen 164 VKPLHIFSDHTLSITDLQIGSG-----G--TNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPA------E 229 (476)
T ss_pred ccceeeeccCcceeEEEEecCC-----C--ccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEccc------c
Confidence 5788999999999999988763 1 25689999999999999999999998875 3567999999998 7
Q ss_pred CEEEEEeCCCcEEEEECCCC----------------cEEEEecCCCC--CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEE
Q 000450 640 DCFLSVGEDFSVALASLETL----------------RVERMFPGHPN--YPAKVVWDCPRGYIACLCRDHSRTSDAVDVL 701 (1496)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~~~----------------~~l~~~~gH~~--~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V 701 (1496)
+.+..|+.||.|.+.++... ..+..+.||.+ .|+|++.+-||..|++|+.| |+|
T Consensus 230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d--------g~V 301 (476)
T KOG0646|consen 230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED--------GKV 301 (476)
T ss_pred cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC--------CCE
Confidence 89999999999998887532 34566789998 99999999999999999998 999
Q ss_pred EEEECCCCeEEEEEeCCCCCceeeee
Q 000450 702 FIWDVKTGARERVLRGTASHSMFDHF 727 (1496)
Q Consensus 702 ~VWDl~tg~~~~~l~gh~a~vi~~~~ 727 (1496)
.|||+.+.+++|++.-..+.+...++
T Consensus 302 cvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 302 CVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred EEEecchHHHHHHHhhhccccceeEe
Confidence 99999999999998765666666654
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.2e-14 Score=154.63 Aligned_cols=193 Identities=16% Similarity=0.188 Sum_probs=149.1
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
++.++.+.+|+++|...+.. ...+..|.+.|+++.+..+.. -+.|++|++||.|.+|+ .
T Consensus 56 ~aSGssDetI~IYDm~k~~q----lg~ll~HagsitaL~F~~~~S--~shLlS~sdDG~i~iw~---------------~ 114 (362)
T KOG0294|consen 56 VASGSSDETIHIYDMRKRKQ----LGILLSHAGSITALKFYPPLS--KSHLLSGSDDGHIIIWR---------------V 114 (362)
T ss_pred EeccCCCCcEEEEeccchhh----hcceeccccceEEEEecCCcc--hhheeeecCCCcEEEEE---------------c
Confidence 44556778999999887644 345677899999987433221 12699999999999943 3
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCC--
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE-- 635 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~-- 635 (1496)
.+-....++++|.+.|+.|++||. +++-+|-+.|+.+++||+-.|+.-.....-. .-+.|.|+|.+..
T Consensus 115 ~~W~~~~slK~H~~~Vt~lsiHPS---------~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQVTDLSIHPS---------GKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFV 184 (362)
T ss_pred CCeEEeeeecccccccceeEecCC---------CceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEE
Confidence 334678899999999999999996 8999999999999999998886433332211 1122455554210
Q ss_pred -------------------------------CCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEE--cCCCC
Q 000450 636 -------------------------------HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW--DCPRG 682 (1496)
Q Consensus 636 -------------------------------~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~--spdg~ 682 (1496)
...+..+++|+.|+.|++||.++..++..|.+|.++|..+.+ .|++.
T Consensus 185 v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~ 264 (362)
T KOG0294|consen 185 VSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHE 264 (362)
T ss_pred EEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCce
Confidence 124678999999999999999999999999999999999985 67888
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000450 683 YIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 683 ~L~tgs~D~sg~~D~dg~V~VWDl~tg 709 (1496)
||++++.| |.|+|||++..
T Consensus 265 ~lvTaSSD--------G~I~vWd~~~~ 283 (362)
T KOG0294|consen 265 YLVTASSD--------GFIKVWDIDME 283 (362)
T ss_pred EEEEeccC--------ceEEEEEcccc
Confidence 99999999 99999999876
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.9e-14 Score=164.53 Aligned_cols=197 Identities=17% Similarity=0.170 Sum_probs=156.0
Q ss_pred ecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCC---EEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000450 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1496)
Q Consensus 479 ~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~---~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~ 555 (1496)
+....+|.++++| .++ ......+.+|..+|.... |+|. .+++|+.|+.+++ |+
T Consensus 84 aaGD~sG~V~vfD-~k~---r~iLR~~~ah~apv~~~~------f~~~d~t~l~s~sDd~v~k~--~d------------ 139 (487)
T KOG0310|consen 84 AAGDESGHVKVFD-MKS---RVILRQLYAHQAPVHVTK------FSPQDNTMLVSGSDDKVVKY--WD------------ 139 (487)
T ss_pred EccCCcCcEEEec-ccc---HHHHHHHhhccCceeEEE------ecccCCeEEEecCCCceEEE--EE------------
Confidence 3344567889999 443 234566788999998887 5554 7888888888888 33
Q ss_pred ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC-ceEEEEcccCCCEEEEEECCCCC
Q 000450 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQT 634 (1496)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg-~~l~~~~~H~~~V~~l~~sPd~~ 634 (1496)
..+......+.||++.|.|.+++|.. +..++|||.||+|++||+++. ..+..+ .|..||..+.+-|.
T Consensus 140 -~s~a~v~~~l~~htDYVR~g~~~~~~--------~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lps-- 207 (487)
T KOG0310|consen 140 -LSTAYVQAELSGHTDYVRCGDISPAN--------DHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPS-- 207 (487)
T ss_pred -cCCcEEEEEecCCcceeEeeccccCC--------CeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCC--
Confidence 33334455789999999999999962 679999999999999999987 555565 68899999999998
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 635 EHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl~~~-~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
|..|++++. ..|++||+.+| +.+..+..|...|+|+++..++..|++++-| +.|+|||+.+.+.+.
T Consensus 208 ----gs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD--------~~VKVfd~t~~Kvv~ 274 (487)
T KOG0310|consen 208 ----GSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLD--------RHVKVFDTTNYKVVH 274 (487)
T ss_pred ----CCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccc--------cceEEEEccceEEEE
Confidence 889999875 57999999855 5556666699999999999999999999999 999999988888887
Q ss_pred EEeCCCCCceee
Q 000450 714 VLRGTASHSMFD 725 (1496)
Q Consensus 714 ~l~gh~a~vi~~ 725 (1496)
.+.- .++++..
T Consensus 275 s~~~-~~pvLsi 285 (487)
T KOG0310|consen 275 SWKY-PGPVLSI 285 (487)
T ss_pred eeec-ccceeeE
Confidence 7654 3355554
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.1e-14 Score=161.58 Aligned_cols=225 Identities=15% Similarity=0.144 Sum_probs=174.3
Q ss_pred ccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCc
Q 000450 481 TFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH 560 (1496)
Q Consensus 481 s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~ 560 (1496)
....-.+.+|.+...... .+.+ .-++.|.|+.-.++.. +++.|...|.|.+| ...+|
T Consensus 57 q~~rp~l~vw~i~k~~~~---~q~~-v~Pg~v~al~s~n~G~----~l~ag~i~g~lYlW---------------elssG 113 (476)
T KOG0646|consen 57 QLKRPLLHVWEILKKDQV---VQYI-VLPGPVHALASSNLGY----FLLAGTISGNLYLW---------------ELSSG 113 (476)
T ss_pred cccCccccccccCchhhh---hhhc-ccccceeeeecCCCce----EEEeecccCcEEEE---------------Eeccc
Confidence 334457888887654321 1222 2356788887555554 77777799999993 35577
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECC---------CCceEEEEcccCCCEEEEEECC
Q 000450 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG---------SGNLITVMHHHVAPVRQIILSP 631 (1496)
Q Consensus 561 ~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~---------tg~~l~~~~~H~~~V~~l~~sP 631 (1496)
..+..+.+|-..|+||.|+-| +.+++|||.||.|.+|++. +-++++.|..|+-+|+.+...+
T Consensus 114 ~LL~v~~aHYQ~ITcL~fs~d---------gs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~ 184 (476)
T KOG0646|consen 114 ILLNVLSAHYQSITCLKFSDD---------GSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGS 184 (476)
T ss_pred cHHHHHHhhccceeEEEEeCC---------CcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecC
Confidence 888888999999999999987 8999999999999999985 3468899999999999999877
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC---
Q 000450 632 PQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT--- 708 (1496)
Q Consensus 632 d~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t--- 708 (1496)
.+ ....++|+|.|+++++||+..+..+.++. .+..+.+++.+|.+..+.+|..+ |.|.+-++..
T Consensus 185 Gg----~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~--------G~I~~~~~~~~~~ 251 (476)
T KOG0646|consen 185 GG----TNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEE--------GKIFQNLLFKLSG 251 (476)
T ss_pred CC----ccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCc--------ceEEeeehhcCCc
Confidence 52 14589999999999999999999888765 55679999999999999999998 9999988743
Q ss_pred -------------CeEEEEEeCCCC--CceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecccc
Q 000450 709 -------------GARERVLRGTAS--HSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1496)
Q Consensus 709 -------------g~~~~~l~gh~a--~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~ 767 (1496)
+...+.+.||.. .+.+...| .+|+...++.- ||++.+|++..
T Consensus 252 ~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais------------~DgtlLlSGd~-----dg~VcvWdi~S 308 (476)
T KOG0646|consen 252 QSAGVNQKGRHEENTQINVLVGHENESAITCLAIS------------TDGTLLLSGDE-----DGKVCVWDIYS 308 (476)
T ss_pred ccccccccccccccceeeeeccccCCcceeEEEEe------------cCccEEEeeCC-----CCCEEEEecch
Confidence 234677889987 66666444 23444444443 99999999743
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.2e-13 Score=140.99 Aligned_cols=207 Identities=17% Similarity=0.202 Sum_probs=160.4
Q ss_pred ccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000450 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1496)
Q Consensus 504 ~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~ 583 (1496)
.+.-|.+.|..++|+.+.. +...+.....-|+.+|+.- +..+++..+.+.||++-|.+|- +=+
T Consensus 131 e~nmhdgtirdl~fld~~~-s~~~il~s~gagdc~iy~t-------------dc~~g~~~~a~sghtghilaly-swn-- 193 (350)
T KOG0641|consen 131 EFNMHDGTIRDLAFLDDPE-SGGAILASAGAGDCKIYIT-------------DCGRGQGFHALSGHTGHILALY-SWN-- 193 (350)
T ss_pred eeeecCCceeeeEEecCCC-cCceEEEecCCCcceEEEe-------------ecCCCCcceeecCCcccEEEEE-Eec--
Confidence 4567889999999877653 2223443334566666322 3456788899999999998874 222
Q ss_pred CcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcc--c-----CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEEC
Q 000450 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--H-----VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1496)
Q Consensus 584 ~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~--H-----~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl 656 (1496)
+-.++||+.|.+|++||++-..++.++.. | ...|.++++.|. |+++++|-.|.+..+||+
T Consensus 194 -------~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps------grll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 194 -------GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS------GRLLASGHADSSCMLYDI 260 (350)
T ss_pred -------CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC------cceeeeccCCCceEEEEe
Confidence 78999999999999999998888876542 2 356999999998 999999999999999999
Q ss_pred CCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC----eEEEEEeCCCCCceeeeeecccc
Q 000450 657 ETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG----ARERVLRGTASHSMFDHFCKGIS 732 (1496)
Q Consensus 657 ~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg----~~~~~l~gh~a~vi~~~~~~~~~ 732 (1496)
+.++.++.|..|...|.+|.|+|...||++++.| ..|++=|+..- -.+.+...|...++...+.+.
T Consensus 261 rg~r~iq~f~phsadir~vrfsp~a~yllt~syd--------~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~-- 330 (350)
T KOG0641|consen 261 RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD--------MKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ-- 330 (350)
T ss_pred eCCceeeeeCCCccceeEEEeCCCceEEEEeccc--------ceEEEeecccchhhcCceEEEEeccCceEEEEecCc--
Confidence 9999999999999999999999999999999998 89999998531 125667788888877766631
Q ss_pred cccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 733 MNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 733 ~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
.-++++.+.|.+.-.|-+
T Consensus 331 ---------------d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 331 ---------------DFSFISSSADKTATLWAL 348 (350)
T ss_pred ---------------cceeeeccCcceEEEecc
Confidence 112344556888888864
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.6e-14 Score=170.85 Aligned_cols=209 Identities=13% Similarity=0.146 Sum_probs=161.2
Q ss_pred CcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEe
Q 000450 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1496)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~s 579 (1496)
.....+.||.+.|..+.+...+ +|++++.|.++++ |+ .....|+.+|. |.+.|||++|+
T Consensus 360 kP~~ef~GHt~DILDlSWSKn~-----fLLSSSMDKTVRL--Wh-------------~~~~~CL~~F~-HndfVTcVaFn 418 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKNN-----FLLSSSMDKTVRL--WH-------------PGRKECLKVFS-HNDFVTCVAFN 418 (712)
T ss_pred cchhhhhccchhheecccccCC-----eeEeccccccEEe--ec-------------CCCcceeeEEe-cCCeeEEEEec
Confidence 4456789999999998855555 6999999999999 43 44557777765 99999999999
Q ss_pred cCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 000450 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 659 (1496)
Q Consensus 580 pd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~ 659 (1496)
|- +.++++||+-|+.||||++...+...=...+ .-|+++.|.|+ |+..+.|+-+|.+++|+.+..
T Consensus 419 Pv--------DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~Pd------Gk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 419 PV--------DDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPD------GKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred cc--------CCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccC------CceEEEEEeccEEEEEEccCC
Confidence 96 5899999999999999999866654444444 78999999999 999999999999999999988
Q ss_pred cEEEEec--CC------CCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCc--eeeeee
Q 000450 660 RVERMFP--GH------PNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHS--MFDHFC 728 (1496)
Q Consensus 660 ~~l~~~~--gH------~~~V~~V~~spdg~-~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~v--i~~~~~ 728 (1496)
+....+. .| ...|+.+.|.|... .|++.+.| ..|||+|.++-.++..+.|+.... +.+.|.
T Consensus 484 k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnD--------SrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs 555 (712)
T KOG0283|consen 484 KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSND--------SRIRIYDGRDKDLVHKFKGFRNTSSQISASFS 555 (712)
T ss_pred eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCC--------CceEEEeccchhhhhhhcccccCCcceeeeEc
Confidence 7765543 11 12799999987543 57777777 899999999999999999876422 122222
Q ss_pred cccccccccceEEcCCccccccceeeccCCcEEeecccccc
Q 000450 729 KGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1496)
Q Consensus 729 ~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e 769 (1496)
.+|. +++..++|..+.+|++..+.
T Consensus 556 ------------~Dgk-----~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 556 ------------SDGK-----HIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ------------cCCC-----EEEEeecCceEEEEeCCCCc
Confidence 1232 35555679999999975443
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-13 Score=144.28 Aligned_cols=191 Identities=19% Similarity=0.151 Sum_probs=157.0
Q ss_pred cccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000450 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1496)
Q Consensus 505 ~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~ 584 (1496)
.+.|.+.|.|.++.++.. .+++|+.|..|++.+++.-.. ..++ ....+.-|.+.|..++|..+
T Consensus 85 ~khhkgsiyc~~ws~~ge----liatgsndk~ik~l~fn~dt~---------~~~g-~dle~nmhdgtirdl~fld~--- 147 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGE----LIATGSNDKTIKVLPFNADTC---------NATG-HDLEFNMHDGTIRDLAFLDD--- 147 (350)
T ss_pred ccccCccEEEEEecCccC----eEEecCCCceEEEEecccccc---------cccC-cceeeeecCCceeeeEEecC---
Confidence 467889999999666665 899999999999977752100 0112 22356779999999999765
Q ss_pred cccCcCCCEEEEEe-CCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 000450 585 AKGWSFNEVLVSGS-MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 663 (1496)
Q Consensus 585 ~~~~~~~~~L~SGs-~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~ 663 (1496)
....+.+|+|++ .|+.|.+-|..+|+.++.+.+|++-|.++- +-+ +-.|++|+.|.+|++||++-..|+.
T Consensus 148 --~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn------~~m~~sgsqdktirfwdlrv~~~v~ 218 (350)
T KOG0641|consen 148 --PESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWN------GAMFASGSQDKTIRFWDLRVNSCVN 218 (350)
T ss_pred --CCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-Eec------CcEEEccCCCceEEEEeeeccceee
Confidence 223477888875 789999999999999999999999998874 333 6699999999999999999999988
Q ss_pred EecC--C-----CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeec
Q 000450 664 MFPG--H-----PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1496)
Q Consensus 664 ~~~g--H-----~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~ 729 (1496)
++.. | .+.|.+|+..|.|++|++|-.| .+..+||++.|+.++.+..|++.+-++.|.+
T Consensus 219 ~l~~~~~~~glessavaav~vdpsgrll~sg~~d--------ssc~lydirg~r~iq~f~phsadir~vrfsp 283 (350)
T KOG0641|consen 219 TLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD--------SSCMLYDIRGGRMIQRFHPHSADIRCVRFSP 283 (350)
T ss_pred eccCcccCCCcccceeEEEEECCCcceeeeccCC--------CceEEEEeeCCceeeeeCCCccceeEEEeCC
Confidence 7641 2 2478999999999999999988 8999999999999999999999999998885
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-14 Score=159.44 Aligned_cols=244 Identities=14% Similarity=0.135 Sum_probs=184.0
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecc-----------c
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL-----------F 545 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~-----------l 545 (1496)
.+++.+.+|-+++||+.+. .+..++..|.+.|.-+.+.. ..+++++.|.+++.|..+. +
T Consensus 81 ~~aSGs~DG~VkiWnlsqR----~~~~~f~AH~G~V~Gi~v~~------~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~ 150 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQR----ECIRTFKAHEGLVRGICVTQ------TSFFTVGDDKTVKQWKIDGPPLHTILGKSVY 150 (433)
T ss_pred hhhccccCceEEEEehhhh----hhhheeecccCceeeEEecc------cceEEecCCcceeeeeccCCcceeeeccccc
Confidence 3567788999999999875 56778999999999987444 3688899999999976321 0
Q ss_pred ccCC------------CCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCce
Q 000450 546 ERHN------------SPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL 613 (1496)
Q Consensus 546 ~~~d------------~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~ 613 (1496)
.+.| .....||.....+++.+.--.+.|.++.|+|.. ..+|++|+.|++|.++|++.+.+
T Consensus 151 ~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE--------TsILas~~sDrsIvLyD~R~~~P 222 (433)
T KOG0268|consen 151 LGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVE--------TSILASCASDRSIVLYDLRQASP 222 (433)
T ss_pred cccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCc--------chheeeeccCCceEEEecccCCc
Confidence 0101 123478877777888887777889999999972 57899999999999999999998
Q ss_pred EEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCC
Q 000450 614 ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHS 692 (1496)
Q Consensus 614 l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~-~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~s 692 (1496)
++.... +-.-+.|+|+|+ ...|+++++|..+..+|++.. +++..+.+|.+.|.+|.|+|.|+-+++|+.|
T Consensus 223 l~KVi~-~mRTN~IswnPe------afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD-- 293 (433)
T KOG0268|consen 223 LKKVIL-TMRTNTICWNPE------AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD-- 293 (433)
T ss_pred cceeee-eccccceecCcc------ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccccc--
Confidence 866543 223467899997 889999999999999999875 4678889999999999999999999999998
Q ss_pred CCCCCCCEEEEEECCCCeEEEEEeCCC-CCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccccccc
Q 000450 693 RTSDAVDVLFIWDVKTGARERVLRGTA-SHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER 770 (1496)
Q Consensus 693 g~~D~dg~V~VWDl~tg~~~~~l~gh~-a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~ 770 (1496)
.+|+||.+..++.--++..-. .+++++.+. ..+-.++.|+ .|+.+|.|..+..|+
T Consensus 294 ------ksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S------~Dskyi~SGS-----------dd~nvRlWka~Asek 349 (433)
T KOG0268|consen 294 ------KSIRIFPVNHGHSRDIYHTKRMQHVFCVKYS------MDSKYIISGS-----------DDGNVRLWKAKASEK 349 (433)
T ss_pred ------ceEEEeecCCCcchhhhhHhhhheeeEEEEe------ccccEEEecC-----------CCcceeeeecchhhh
Confidence 999999998876543332111 234444333 2233344443 389999998654443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=155.03 Aligned_cols=201 Identities=17% Similarity=0.222 Sum_probs=156.1
Q ss_pred EEEEEEcCCcEEEEEecccccC-CCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERH-NSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~-d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~l 605 (1496)
..++-++.|.+.||........ +.++..-.....+++.++.+|.+.=..|.|+|-. ...|+||..-+.|++
T Consensus 167 ~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~--------~g~LlsGDc~~~I~l 238 (440)
T KOG0302|consen 167 LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK--------TGRLLSGDCVKGIHL 238 (440)
T ss_pred eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc--------ccccccCccccceEe
Confidence 5677788999999654321111 1111111123346788999999999999999951 456889988889999
Q ss_pred EECCCCceE---EEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC---cEEEEecCCCCCcEEEEEcC
Q 000450 606 WDLGSGNLI---TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL---RVERMFPGHPNYPAKVVWDC 679 (1496)
Q Consensus 606 WDl~tg~~l---~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~---~~l~~~~gH~~~V~~V~~sp 679 (1496)
|...+|.-. ..|.+|+..|-.+.|+|.+ ...|+|||.|++|+|||++.+ .++.+ ..|.+.|+.|.|+.
T Consensus 239 w~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE-----~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr 312 (440)
T KOG0302|consen 239 WEPSTGSWKVDQRPFTGHTKSVEDLQWSPTE-----DGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNR 312 (440)
T ss_pred eeeccCceeecCccccccccchhhhccCCcc-----CceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccC
Confidence 999987643 4577899999999999986 779999999999999999987 34444 88999999999999
Q ss_pred CCCEEEEEEcCCCCCCCCCCEEEEEECCC---CeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeecc
Q 000450 680 PRGYIACLCRDHSRTSDAVDVLFIWDVKT---GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHE 756 (1496)
Q Consensus 680 dg~~L~tgs~D~sg~~D~dg~V~VWDl~t---g~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~ 756 (1496)
...+|++|+.| |+++|||++. ++.+..+.-|.++++++.+.+. . .+. +.....
T Consensus 313 ~~~lLasG~Dd--------Gt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~----e-~s~-----------iaasg~ 368 (440)
T KOG0302|consen 313 REPLLASGGDD--------GTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH----E-DSV-----------IAASGE 368 (440)
T ss_pred CcceeeecCCC--------ceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc----c-Cce-----------EEeccC
Confidence 98899998888 9999999976 6788999999999999887741 1 111 223345
Q ss_pred CCcEEeecc
Q 000450 757 DGTFRQSQI 765 (1496)
Q Consensus 757 D~~ir~W~l 765 (1496)
|.++-+|+|
T Consensus 369 D~QitiWDl 377 (440)
T KOG0302|consen 369 DNQITIWDL 377 (440)
T ss_pred CCcEEEEEe
Confidence 899999997
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=160.66 Aligned_cols=214 Identities=18% Similarity=0.197 Sum_probs=153.7
Q ss_pred ccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000450 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1496)
Q Consensus 504 ~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~ 583 (1496)
.+.+|...|+++++-+... ++++|+-|-+|+.|.++-+.. .. ...+.+.-.. ...|+++.|++.
T Consensus 162 ~l~hgtk~Vsal~~Dp~Ga----R~~sGs~Dy~v~~wDf~gMda---s~-----~~fr~l~P~E--~h~i~sl~ys~T-- 225 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGA----RFVSGSLDYTVKFWDFQGMDA---SM-----RSFRQLQPCE--THQINSLQYSVT-- 225 (641)
T ss_pred eccCCceEEEEeeecCCCc----eeeeccccceEEEEecccccc---cc-----hhhhccCccc--ccccceeeecCC--
Confidence 3678899999999666665 999999999999966652221 11 1112222223 347899999997
Q ss_pred CcccCcCCCEEEEEeCCCcEEEEECCCCceEE-------------EEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCc
Q 000450 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLIT-------------VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS 650 (1496)
Q Consensus 584 ~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~-------------~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~Dgs 650 (1496)
+..++..+.....+|+|-. |..+. .-++|...+++..|+|+. ...|++++.|++
T Consensus 226 -------g~~iLvvsg~aqakl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~-----k~~FlT~s~Dgt 292 (641)
T KOG0772|consen 226 -------GDQILVVSGSAQAKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN-----KEEFLTCSYDGT 292 (641)
T ss_pred -------CCeEEEEecCcceeEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccCc-----ccceEEecCCCc
Confidence 5555555556788999954 43332 235799999999999985 679999999999
Q ss_pred EEEEECCCCcE-EEEec-----CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE---EEEEeCCCC-
Q 000450 651 VALASLETLRV-ERMFP-----GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR---ERVLRGTAS- 720 (1496)
Q Consensus 651 V~lWdl~~~~~-l~~~~-----gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~---~~~l~gh~a- 720 (1496)
+|+||+.+.+. +..|. +..-+++.++|+||++++++||.| |+|.+||...... ..+-..|..
T Consensus 293 lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~D--------GSIQ~W~~~~~~v~p~~~vk~AH~~g 364 (641)
T KOG0772|consen 293 LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLD--------GSIQIWDKGSRTVRPVMKVKDAHLPG 364 (641)
T ss_pred EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccC--------CceeeeecCCcccccceEeeeccCCC
Confidence 99999976442 23332 333478999999999999999999 9999999754321 334456665
Q ss_pred -CceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecccccccc
Q 000450 721 -HSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERG 771 (1496)
Q Consensus 721 -~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~~ 771 (1496)
.+.++.|. .+|+.+.+-.. |+++|.|+|+++.+.
T Consensus 365 ~~Itsi~FS------------~dg~~LlSRg~-----D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 365 QDITSISFS------------YDGNYLLSRGF-----DDTLKVWDLRQFKKP 399 (641)
T ss_pred CceeEEEec------------cccchhhhccC-----CCceeeeeccccccc
Confidence 56666665 23677666666 999999999887764
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=158.41 Aligned_cols=167 Identities=19% Similarity=0.210 Sum_probs=143.7
Q ss_pred ccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000450 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1496)
Q Consensus 506 ~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~ 585 (1496)
.+|...+.++++.+++. ++++|..|..|.| |+.++.++++.+.+|.+.|.+++|-..
T Consensus 199 ~~h~keil~~avS~Dgk----ylatgg~d~~v~I---------------w~~~t~ehv~~~~ghr~~V~~L~fr~g---- 255 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGK----YLATGGRDRHVQI---------------WDCDTLEHVKVFKGHRGAVSSLAFRKG---- 255 (479)
T ss_pred ccccceeEEEEEcCCCc----EEEecCCCceEEE---------------ecCcccchhhcccccccceeeeeeecC----
Confidence 37889999999888888 9999999999988 335567788889999999999999764
Q ss_pred ccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000450 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF 665 (1496)
Q Consensus 586 ~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~ 665 (1496)
...|.+++.|++|++|++.....+.++.+|.+.|..|..... .+++..|+.|+++++|.+.. +....|
T Consensus 256 -----t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~r------eR~vtVGgrDrT~rlwKi~e-esqlif 323 (479)
T KOG0299|consen 256 -----TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSR------ERCVTVGGRDRTVRLWKIPE-ESQLIF 323 (479)
T ss_pred -----ccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcc------cceEEeccccceeEEEeccc-cceeee
Confidence 568999999999999999999899999999999999987766 67888888999999999943 444677
Q ss_pred cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 666 PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 666 ~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
.+|.+.+-|++|-.+. .+++|+.| |.|.+|++-+.+.+.+..
T Consensus 324 rg~~~sidcv~~In~~-HfvsGSdn--------G~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 324 RGGEGSIDCVAFINDE-HFVSGSDN--------GSIALWSLLKKKPLFTSR 365 (479)
T ss_pred eCCCCCeeeEEEeccc-ceeeccCC--------ceEEEeeecccCceeEee
Confidence 8899999999998654 56788888 999999999888876654
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-13 Score=165.18 Aligned_cols=197 Identities=20% Similarity=0.202 Sum_probs=158.4
Q ss_pred CccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEE
Q 000450 485 DTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQ 564 (1496)
Q Consensus 485 ~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~ 564 (1496)
..+.+|+.....- ..-..-+...|+++.+..+.. .|++|..+|.+.| || ..+.+...
T Consensus 197 ~~vylW~~~s~~v----~~l~~~~~~~vtSv~ws~~G~----~LavG~~~g~v~i--wD-------------~~~~k~~~ 253 (484)
T KOG0305|consen 197 QSVYLWSASSGSV----TELCSFGEELVTSVKWSPDGS----HLAVGTSDGTVQI--WD-------------VKEQKKTR 253 (484)
T ss_pred ceEEEEecCCCce----EEeEecCCCceEEEEECCCCC----EEEEeecCCeEEE--Ee-------------hhhccccc
Confidence 4567777665431 111222267899999777666 9999999999999 43 44456677
Q ss_pred EEec-CCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEE-EcccCCCEEEEEECCCCCCCCCCCEE
Q 000450 565 YFLG-HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITV-MHHHVAPVRQIILSPPQTEHPWSDCF 642 (1496)
Q Consensus 565 ~l~g-H~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~-~~~H~~~V~~l~~sPd~~~~~~g~~l 642 (1496)
.+.+ |.+.|-|++|. +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++| +.++
T Consensus 254 ~~~~~h~~rvg~laW~-----------~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d------~~~l 316 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWN-----------SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD------GNQL 316 (484)
T ss_pred cccCCcCceeEEEecc-----------CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCC------CCee
Confidence 7778 99999999997 47899999999999999998876655 8899999999999999 9999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCC-CCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCC
Q 000450 643 LSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP-RGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASH 721 (1496)
Q Consensus 643 ~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spd-g~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~ 721 (1496)
+||+.|+.+.|||....+++..+..|.+.|.+++|+|- ...||+|+. +. |++|++||..+|++++.+.... +
T Consensus 317 ASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG----s~--D~~i~fwn~~~g~~i~~vdtgs-Q 389 (484)
T KOG0305|consen 317 ASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG----SA--DRCIKFWNTNTGARIDSVDTGS-Q 389 (484)
T ss_pred ccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC----Cc--ccEEEEEEcCCCcEecccccCC-c
Confidence 99999999999999888999999999999999999994 457777653 23 4999999999999988765433 4
Q ss_pred ceeeeee
Q 000450 722 SMFDHFC 728 (1496)
Q Consensus 722 vi~~~~~ 728 (1496)
+-.+.+.
T Consensus 390 VcsL~Ws 396 (484)
T KOG0305|consen 390 VCSLIWS 396 (484)
T ss_pred eeeEEEc
Confidence 4444444
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-13 Score=156.89 Aligned_cols=136 Identities=19% Similarity=0.292 Sum_probs=124.0
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC-------ceEEEEcccCCCEEEEEECCCCCC
Q 000450 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-------NLITVMHHHVAPVRQIILSPPQTE 635 (1496)
Q Consensus 563 ~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg-------~~l~~~~~H~~~V~~l~~sPd~~~ 635 (1496)
...+.||+++|..++|.|.+ .+.++|||.|.+|.||++-.+ +++..+.+|...|--|+|+|..
T Consensus 74 ~P~v~GHt~~vLDi~w~Pfn--------D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA-- 143 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFN--------DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA-- 143 (472)
T ss_pred CCCccCccccccccccCccC--------CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc--
Confidence 34567999999999999973 789999999999999999754 3567889999999999999985
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 636 HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 636 ~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
.+.|+|++.|.+|.+||+.+|+.+.++. |..-|+++.|+.||.+|++.|.| ..|+|||.++|+.+.+-
T Consensus 144 ---~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckD--------KkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 144 ---PNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKD--------KKVRVIDPRRGTVVSEG 211 (472)
T ss_pred ---hhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeeccc--------ceeEEEcCCCCcEeeec
Confidence 6799999999999999999999988877 99999999999999999999999 99999999999999988
Q ss_pred eCCCC
Q 000450 716 RGTAS 720 (1496)
Q Consensus 716 ~gh~a 720 (1496)
.+|.+
T Consensus 212 ~~heG 216 (472)
T KOG0303|consen 212 VAHEG 216 (472)
T ss_pred ccccC
Confidence 88875
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.8e-13 Score=145.75 Aligned_cols=231 Identities=17% Similarity=0.193 Sum_probs=157.8
Q ss_pred ccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcce---EEEEecCCccEEEEEEecCC
Q 000450 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS---RQYFLGHTGAVLCLAAHRMV 582 (1496)
Q Consensus 506 ~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~---~~~l~gH~~~V~~La~spd~ 582 (1496)
..|.+.|+++.+-.... .++++|+.||.|.||+.+....-.... -+...++ .+.-.+|+-.|..+.|.|-
T Consensus 40 r~HgGsvNsL~id~teg---rymlSGgadgsi~v~Dl~n~t~~e~s~---li~k~~c~v~~~h~~~Hky~iss~~WyP~- 112 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEG---RYMLSGGADGSIAVFDLQNATDYEASG---LIAKHKCIVAKQHENGHKYAISSAIWYPI- 112 (397)
T ss_pred ccCCCccceeeeccccc---eEEeecCCCccEEEEEeccccchhhcc---ceeheeeeccccCCccceeeeeeeEEeee-
Confidence 56888999876433221 279999999999996654221100000 0111111 1223578889999999886
Q ss_pred CCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCC-EEEEEeCCCcEEEEECCCCcE
Q 000450 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD-CFLSVGEDFSVALASLETLRV 661 (1496)
Q Consensus 583 ~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~-~l~Sgs~DgsV~lWdl~~~~~ 661 (1496)
+...+.|+|.|.++++||..+-+....|+- .+.|.+-+++|-.. .+ ++++|-.|-.|++-|+..|.+
T Consensus 113 -------DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~----sHcLiA~gtr~~~VrLCDi~SGs~ 180 (397)
T KOG4283|consen 113 -------DTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAM----SHCLIAAGTRDVQVRLCDIASGSF 180 (397)
T ss_pred -------cCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhh----cceEEEEecCCCcEEEEeccCCcc
Confidence 377999999999999999999887777753 56788888888631 24 556677788999999999999
Q ss_pred EEEecCCCCCcEEEEEcCCCCEE-EEEEcCCCCCCCCCCEEEEEECCCC-eEEEEEeCCCCCce-eeeeecccccccccc
Q 000450 662 ERMFPGHPNYPAKVVWDCPRGYI-ACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSM-FDHFCKGISMNSISG 738 (1496)
Q Consensus 662 l~~~~gH~~~V~~V~~spdg~~L-~tgs~D~sg~~D~dg~V~VWDl~tg-~~~~~l~gh~a~vi-~~~~~~~~~~~~~sg 738 (1496)
-+++.||.+.|.+|.|+|...++ ++|+.| |.|++||++.. -+.+++..|...-. .+.... .......|
T Consensus 181 sH~LsGHr~~vlaV~Wsp~~e~vLatgsaD--------g~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~-ah~gkvng 251 (397)
T KOG4283|consen 181 SHTLSGHRDGVLAVEWSPSSEWVLATGSAD--------GAIRLWDIRRASGCFRVLDQHNTKRPPILKTNT-AHYGKVNG 251 (397)
T ss_pred eeeeccccCceEEEEeccCceeEEEecCCC--------ceEEEEEeecccceeEEeecccCccCccccccc-cccceeee
Confidence 99999999999999999988865 667777 99999999875 67888888873111 111000 00001222
Q ss_pred eEEcCCccccccceeeccCCcEEeecccc
Q 000450 739 SVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1496)
Q Consensus 739 ~v~~g~~~~s~~l~~~~~D~~ir~W~l~~ 767 (1496)
.. +.. ..-.+.....|.++|.|+..+
T Consensus 252 la--~tS-d~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 252 LA--WTS-DARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred ee--ecc-cchhhhhccCccceEEeeccc
Confidence 11 222 222344556699999998643
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-12 Score=155.15 Aligned_cols=143 Identities=15% Similarity=0.222 Sum_probs=111.2
Q ss_pred ccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCC
Q 000450 523 YAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD 600 (1496)
Q Consensus 523 f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~D 600 (1496)
|+|. ++++++ -..|+| +++.. ...++.+......|..+++||. |..|+.|+.|
T Consensus 574 FHPs~p~lfVaT-q~~vRi--YdL~k-------------qelvKkL~tg~kwiS~msihp~---------GDnli~gs~d 628 (733)
T KOG0650|consen 574 FHPSKPYLFVAT-QRSVRI--YDLSK-------------QELVKKLLTGSKWISSMSIHPN---------GDNLILGSYD 628 (733)
T ss_pred ecCCCceEEEEe-ccceEE--EehhH-------------HHHHHHHhcCCeeeeeeeecCC---------CCeEEEecCC
Confidence 6665 555554 457888 44221 1223333334456889999996 8889999999
Q ss_pred CcEEEEECCCC-ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECC------CC---cEEEEecCCCC
Q 000450 601 CSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE------TL---RVERMFPGHPN 670 (1496)
Q Consensus 601 gtV~lWDl~tg-~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~------~~---~~l~~~~gH~~ 670 (1496)
+.++.+|+.-. ++.+++..|...|++|+|++. -.+||||+.|+++.|+.-. .. -++..++||..
T Consensus 629 ~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r------yPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~ 702 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR------YPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK 702 (733)
T ss_pred CeeEEEEcccCcchhHHhhhhhhhhhhhhhccc------cceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence 99999999754 577889999999999999998 7899999999999988532 11 24577889976
Q ss_pred C----cEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEE
Q 000450 671 Y----PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1496)
Q Consensus 671 ~----V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VW 704 (1496)
. |..+.|+|...+|++++.| |+|++|
T Consensus 703 ~~~~gVLd~~wHP~qpWLfsAGAd--------~tirlf 732 (733)
T KOG0650|consen 703 TNDLGVLDTIWHPRQPWLFSAGAD--------GTIRLF 732 (733)
T ss_pred ecccceEeecccCCCceEEecCCC--------ceEEee
Confidence 5 8999999999999999998 999998
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-12 Score=159.81 Aligned_cols=186 Identities=18% Similarity=0.225 Sum_probs=151.4
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
.+.+++.+.++.++........+ .+.+-+-.++.+++..+.. .++.|++|-.|++.+.+
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~----iL~Rftlp~r~~~v~g~g~----~iaagsdD~~vK~~~~~------------- 126 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDT----ILARFTLPIRDLAVSGSGK----MIAAGSDDTAVKLLNLD------------- 126 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccc----eeeeeeccceEEEEecCCc----EEEeecCceeEEEEecc-------------
Confidence 46777888888888877654422 2233345667777666665 89999999999995443
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcc--------cCCCEEEEE
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--------HVAPVRQII 628 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~--------H~~~V~~l~ 628 (1496)
+......+.||.++|.+|.|+|. +.+||+.+.||+|++||+.++.+.+++.+ -...+..++
T Consensus 127 --D~s~~~~lrgh~apVl~l~~~p~---------~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~a 195 (933)
T KOG1274|consen 127 --DSSQEKVLRGHDAPVLQLSYDPK---------GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLA 195 (933)
T ss_pred --ccchheeecccCCceeeeeEcCC---------CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeee
Confidence 23456789999999999999997 89999999999999999999987776654 145678999
Q ss_pred ECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecC--CCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 629 LSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG--HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 629 ~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~g--H~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
|+|+ +..++..+.|++|++|+..++.....+.. |...+..+.|+|.|.||+++..| |.|-|||.
T Consensus 196 W~Pk------~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~--------g~I~vWnv 261 (933)
T KOG1274|consen 196 WHPK------GGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLD--------GQILVWNV 261 (933)
T ss_pred ecCC------CCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccC--------CcEEEEec
Confidence 9999 78899999999999999999888776653 44458999999999999999999 99999999
Q ss_pred CC
Q 000450 707 KT 708 (1496)
Q Consensus 707 ~t 708 (1496)
++
T Consensus 262 ~t 263 (933)
T KOG1274|consen 262 DT 263 (933)
T ss_pred cc
Confidence 97
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-11 Score=137.18 Aligned_cols=95 Identities=19% Similarity=0.266 Sum_probs=73.1
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCC---------ccEEEEEEecCCCCcccCcCCCEEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHT---------GAVLCLAAHRMVGTAKGWSFNEVLVSG 597 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~---------~~V~~La~spd~~~~~~~~~~~~L~SG 597 (1496)
..++++-||.+.+-.++.-. +.......|+.|. -+|++++|||- .+.|+||
T Consensus 191 Gy~~sSieGRVavE~~d~s~-----------~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~---------~~tfaTg 250 (323)
T KOG1036|consen 191 GYVVSSIEGRVAVEYFDDSE-----------EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI---------HGTFATG 250 (323)
T ss_pred ceEEEeecceEEEEccCCch-----------HHhhhceeEEeeecccCCceEEEEeceeEeccc---------cceEEec
Confidence 57788888888885554210 0011223344443 27999999997 5889999
Q ss_pred eCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC
Q 000450 598 SMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1496)
Q Consensus 598 s~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~ 647 (1496)
+.||.|.+||+.+.+.+..|......|.+++|+.+ |.+||.++.
T Consensus 251 GsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~d------G~~LAia~s 294 (323)
T KOG1036|consen 251 GSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMD------GSLLAIASS 294 (323)
T ss_pred CCCceEEEccCcchhhhhhccCCCCceEEEEeccC------CCeEEEEec
Confidence 99999999999999999999888888999999999 889988864
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=155.37 Aligned_cols=200 Identities=17% Similarity=0.249 Sum_probs=155.6
Q ss_pred ccccCCccEEEEEeeccccccCC---EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEec
Q 000450 504 DFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1496)
Q Consensus 504 ~~~~h~~~Vts~~~~s~~~f~P~---~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~sp 580 (1496)
.+.+|.+.|.+++ =+|. .+++|+.||.|+|| + ..+..+..++..|.|.|..|.+..
T Consensus 61 ~L~gHrdGV~~la------khp~~ls~~aSGs~DG~VkiW--n-------------lsqR~~~~~f~AH~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 61 SLDGHRDGVSCLA------KHPNKLSTVASGSCDGEVKIW--N-------------LSQRECIRTFKAHEGLVRGICVTQ 119 (433)
T ss_pred hccccccccchhh------cCcchhhhhhccccCceEEEE--e-------------hhhhhhhheeecccCceeeEEecc
Confidence 3578999999987 4444 68999999999993 3 334577889999999999999863
Q ss_pred CCCCcccCcCCCEEEEEeCCCcEEEEECC--------------------------------------CCceEEEEcccCC
Q 000450 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLG--------------------------------------SGNLITVMHHHVA 622 (1496)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtV~lWDl~--------------------------------------tg~~l~~~~~H~~ 622 (1496)
..++++|.|.+|+.|-+. ...++..|..-..
T Consensus 120 -----------~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~D 188 (433)
T KOG0268|consen 120 -----------TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGAD 188 (433)
T ss_pred -----------cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCC
Confidence 557888888888888743 1123444555566
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEE
Q 000450 623 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLF 702 (1496)
Q Consensus 623 ~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~ 702 (1496)
.|.++.|+|.+ ..+|++++.|++|.|||++++.+++... -.-.-+.|+|+|..--++++..| ..+|
T Consensus 189 ti~svkfNpvE-----TsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED--------~nlY 254 (433)
T KOG0268|consen 189 SISSVKFNPVE-----TSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANED--------HNLY 254 (433)
T ss_pred ceeEEecCCCc-----chheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeecccc--------ccce
Confidence 78889999985 5689999999999999999998887654 22345789999977677777777 8999
Q ss_pred EEECCC-CeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccc
Q 000450 703 IWDVKT-GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1496)
Q Consensus 703 VWDl~t-g~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~ 766 (1496)
.+|++. .+.+.+..+|.+.++.+.|.+ +|..-+++++ |.+||++...
T Consensus 255 ~~DmR~l~~p~~v~~dhvsAV~dVdfsp------------tG~Efvsgsy-----DksIRIf~~~ 302 (433)
T KOG0268|consen 255 TYDMRNLSRPLNVHKDHVSAVMDVDFSP------------TGQEFVSGSY-----DKSIRIFPVN 302 (433)
T ss_pred ehhhhhhcccchhhcccceeEEEeccCC------------Ccchhccccc-----cceEEEeecC
Confidence 999987 456889999999999988873 2666666666 9999997753
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.1e-13 Score=142.80 Aligned_cols=200 Identities=17% Similarity=0.213 Sum_probs=155.2
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
++++.+.++++++++..++.+ -++..++.+|.++|+.+++..... ...|++++.||.+.||+.. .+ .|.
T Consensus 25 rlATcsSD~tVkIf~v~~n~~-s~ll~~L~Gh~GPVwqv~wahPk~--G~iLAScsYDgkVIiWke~-------~g-~w~ 93 (299)
T KOG1332|consen 25 RLATCSSDGTVKIFEVRNNGQ-SKLLAELTGHSGPVWKVAWAHPKF--GTILASCSYDGKVIIWKEE-------NG-RWT 93 (299)
T ss_pred eeeeecCCccEEEEEEcCCCC-ceeeeEecCCCCCeeEEeeccccc--CcEeeEeecCceEEEEecC-------CC-chh
Confidence 478888999999999988755 367788999999999988543110 1289999999999996543 11 232
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC---ceEEEEcccCCCEEEEEECCCC
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQ 633 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg---~~l~~~~~H~~~V~~l~~sPd~ 633 (1496)
.......|...|++++|.|.. .+-.|++++.||+|.+.+.+.. ..-.....|.-.|+++.|.|..
T Consensus 94 -----k~~e~~~h~~SVNsV~waphe-------ygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~ 161 (299)
T KOG1332|consen 94 -----KAYEHAAHSASVNSVAWAPHE-------YGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPAS 161 (299)
T ss_pred -----hhhhhhhhcccceeecccccc-------cceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcC
Confidence 223456799999999998862 3779999999999999998754 2335667899999999999963
Q ss_pred CCC------C--CCCEEEEEeCCCcEEEEECCCCc--EEEEecCCCCCcEEEEEcCCC----CEEEEEEcCCCCCCCCCC
Q 000450 634 TEH------P--WSDCFLSVGEDFSVALASLETLR--VERMFPGHPNYPAKVVWDCPR----GYIACLCRDHSRTSDAVD 699 (1496)
Q Consensus 634 ~~~------~--~g~~l~Sgs~DgsV~lWdl~~~~--~l~~~~gH~~~V~~V~~spdg----~~L~tgs~D~sg~~D~dg 699 (1496)
... + .-+.|+||+.|..|+||+..+++ ..+.+.+|.+.|..|+|.|.- .+|++++.| |
T Consensus 162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD--------g 233 (299)
T KOG1332|consen 162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD--------G 233 (299)
T ss_pred CCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCC--------C
Confidence 210 1 11469999999999999998753 446689999999999999964 589999999 9
Q ss_pred EEEEEECC
Q 000450 700 VLFIWDVK 707 (1496)
Q Consensus 700 ~V~VWDl~ 707 (1496)
+|.||-.+
T Consensus 234 ~viIwt~~ 241 (299)
T KOG1332|consen 234 TVIIWTKD 241 (299)
T ss_pred cEEEEEec
Confidence 99999764
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6e-12 Score=140.41 Aligned_cols=199 Identities=17% Similarity=0.168 Sum_probs=158.0
Q ss_pred ccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcce
Q 000450 483 CQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS 562 (1496)
Q Consensus 483 ~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~ 562 (1496)
.+.+++..++.++ +.++.|.||...|+++.+.+... .+++++.|++|++ || ....++
T Consensus 78 ~d~tIryLsl~dN----kylRYF~GH~~~V~sL~~sP~~d----~FlS~S~D~tvrL--WD-------------lR~~~c 134 (311)
T KOG1446|consen 78 EDDTIRYLSLHDN----KYLRYFPGHKKRVNSLSVSPKDD----TFLSSSLDKTVRL--WD-------------LRVKKC 134 (311)
T ss_pred CCCceEEEEeecC----ceEEEcCCCCceEEEEEecCCCC----eEEecccCCeEEe--eE-------------ecCCCC
Confidence 3457777777765 55788999999999998666554 8999999999999 44 223344
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC--ceEEEEccc---CCCEEEEEECCCCCCCC
Q 000450 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG--NLITVMHHH---VAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 563 ~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg--~~l~~~~~H---~~~V~~l~~sPd~~~~~ 637 (1496)
...+.-- .-...+|.|. |-++|.|.....|+++|++.. .+..+|... ....+.+.|+|+
T Consensus 135 qg~l~~~--~~pi~AfDp~---------GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d----- 198 (311)
T KOG1446|consen 135 QGLLNLS--GRPIAAFDPE---------GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD----- 198 (311)
T ss_pred ceEEecC--CCcceeECCC---------CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC-----
Confidence 4433322 2235688997 788888887779999999864 344555443 567899999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCc---EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYP---AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V---~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
|++++-....+.+.+.|--+|..+.++.++...- ....|+||++++++|+.| |+|++|++++|+.+..
T Consensus 199 -GK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~d--------g~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 199 -GKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDD--------GTIHVWNLETGKKVAV 269 (311)
T ss_pred -CCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCC--------CcEEEEEcCCCcEeeE
Confidence 9999999999999999999999999998886632 678999999999999988 9999999999999999
Q ss_pred EeC-CCCCceeeeeec
Q 000450 715 LRG-TASHSMFDHFCK 729 (1496)
Q Consensus 715 l~g-h~a~vi~~~~~~ 729 (1496)
+.| +...+.+.+|.|
T Consensus 270 ~~~~~~~~~~~~~fnP 285 (311)
T KOG1446|consen 270 LRGPNGGPVSCVRFNP 285 (311)
T ss_pred ecCCCCCCccccccCC
Confidence 999 577777776664
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3e-12 Score=141.49 Aligned_cols=245 Identities=12% Similarity=0.123 Sum_probs=172.8
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
++++.+.+.++++||.....-.=.+....+.|.+.|..+.+.+..+ ...+++++.|+++.||.=+.. ..+.+++.|.
T Consensus 27 RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEf--GqvvA~cS~Drtv~iWEE~~~-~~~~~~~~Wv 103 (361)
T KOG2445|consen 27 RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEF--GQVVATCSYDRTVSIWEEQEK-SEEAHGRRWV 103 (361)
T ss_pred eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccc--cceEEEEecCCceeeeeeccc-ccccccceeE
Confidence 5888889999999997443332245556788999999987443221 127899999999999432211 0122333443
Q ss_pred cCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC------ceEEEEc-------ccCCC
Q 000450 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG------NLITVMH-------HHVAP 623 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg------~~l~~~~-------~H~~~ 623 (1496)
...++...+..|+.+.|.|.+ .|-.|++++.||++|||+.-.. .+.+.+. .+..+
T Consensus 104 -----~~ttl~DsrssV~DV~FaP~h-------lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~ 171 (361)
T KOG2445|consen 104 -----RRTTLVDSRSSVTDVKFAPKH-------LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQP 171 (361)
T ss_pred -----EEEEeecCCcceeEEEecchh-------cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCc
Confidence 356777888999999999963 4779999999999999987543 3334444 46678
Q ss_pred EEEEEECCCCCCCCCCCEEEEEeCC-----CcEEEEECCCC----cEEEEecCCCCCcEEEEEcCCC----CEEEEEEcC
Q 000450 624 VRQIILSPPQTEHPWSDCFLSVGED-----FSVALASLETL----RVERMFPGHPNYPAKVVWDCPR----GYIACLCRD 690 (1496)
Q Consensus 624 V~~l~~sPd~~~~~~g~~l~Sgs~D-----gsV~lWdl~~~----~~l~~~~gH~~~V~~V~~spdg----~~L~tgs~D 690 (1496)
..||.|+|... ....|+.|+.+ +.+.||....+ ..+..+.+|..+|++++|.|.- ..|+++|.|
T Consensus 172 ~~CvsWn~sr~---~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 172 CFCVSWNPSRM---HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred ceEEeeccccc---cCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 89999998632 23467777655 48889976432 3456778999999999999953 478999998
Q ss_pred CCCCCCCCCEEEEEECCCC--------------------eEEEEEeCCCCCceeeeeecccccccccceEEcCCcccccc
Q 000450 691 HSRTSDAVDVLFIWDVKTG--------------------ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSL 750 (1496)
Q Consensus 691 ~sg~~D~dg~V~VWDl~tg--------------------~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~ 750 (1496)
| |+||.++.. +.+..+.+|..++..+.+. .+ |....+..
T Consensus 249 --------g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN-------mt-----GtiLsStG 307 (361)
T KOG2445|consen 249 --------G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWN-------MT-----GTILSSTG 307 (361)
T ss_pred --------c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEe-------ee-----eeEEeecC
Confidence 8 999999731 2456678888888887555 23 33333333
Q ss_pred ceeeccCCcEEeecc
Q 000450 751 LLPIHEDGTFRQSQI 765 (1496)
Q Consensus 751 l~~~~~D~~ir~W~l 765 (1496)
.||++|.|..
T Consensus 308 -----dDG~VRLWka 317 (361)
T KOG2445|consen 308 -----DDGCVRLWKA 317 (361)
T ss_pred -----CCceeeehhh
Confidence 4999999985
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-10 Score=133.51 Aligned_cols=89 Identities=15% Similarity=0.173 Sum_probs=70.4
Q ss_pred EEEEEecCCCCcccCcCCCE-EEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEE-eCCCcE
Q 000450 574 LCLAAHRMVGTAKGWSFNEV-LVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV-GEDFSV 651 (1496)
Q Consensus 574 ~~La~spd~~~~~~~~~~~~-L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sg-s~DgsV 651 (1496)
..++|+|+ ++. +++.+.++.|.+||+.+++.+..+. +...+.++.|+|+ ++.++++ +.++.|
T Consensus 210 ~~i~~s~d---------g~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~------g~~l~~~~~~~~~i 273 (300)
T TIGR03866 210 VGIKLTKD---------GKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPD------EKYLLTTNGVSNDV 273 (300)
T ss_pred cceEECCC---------CCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCC------CCEEEEEcCCCCeE
Confidence 45788887 565 4555567789999999988776653 4457999999999 7887776 569999
Q ss_pred EEEECCCCcEEEEecCCCCCcEEEEEcC
Q 000450 652 ALASLETLRVERMFPGHPNYPAKVVWDC 679 (1496)
Q Consensus 652 ~lWdl~~~~~l~~~~gH~~~V~~V~~sp 679 (1496)
++||+++++++..+... ..++.++++|
T Consensus 274 ~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 274 SVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 99999999999988754 5568888876
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-12 Score=140.43 Aligned_cols=238 Identities=17% Similarity=0.186 Sum_probs=152.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccccccccccc
Q 000450 19 VTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKS 98 (1496)
Q Consensus 19 Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g~~ 98 (1496)
-+|+.|++-|.+||.|+.||.|.+||+.+ ..+..+|.+|..||++|+ +
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-----~~iar~lsaH~~pi~sl~---------------------------W 73 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT-----FRIARMLSAHVRPITSLC---------------------------W 73 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc-----cchhhhhhccccceeEEE---------------------------e
Confidence 68999999999999999999999999986 456678999999999999 5
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEEEcc------cccccCCccccccc----
Q 000450 99 SLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGC------CFIDTNQLSDHHSF---- 168 (1496)
Q Consensus 99 s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~------~~id~~~l~~~~~~---- 168 (1496)
|+|+..|+|+|.|..+.+||+.+|.|+.+..++ +|.--+.+.|..+-.|+.+ ..++... ..|++
T Consensus 74 S~dgr~LltsS~D~si~lwDl~~gs~l~rirf~----spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~d 147 (405)
T KOG1273|consen 74 SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD----SPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSVLPKD 147 (405)
T ss_pred cCCCCEeeeecCCceeEEEeccCCCceeEEEcc----CccceeeeccccCCeEEEEEecCCcEEEEecC--CceeeccCC
Confidence 777778999999999999999999999887664 3333233332222112111 1111110 11222
Q ss_pred -----ccccccccccccC--CCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCc
Q 000450 169 -----ESVEGDLVSEDKE--VPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGR 241 (1496)
Q Consensus 169 -----~~v~~~~~~~d~~--~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~ 241 (1496)
+..-.+ .++|+. .......++.+.++|..|++++..+.-.. +..|..+-|+- .+ ..+++-++|..
T Consensus 148 ~d~dln~sas~-~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits--~~~IK~I~~s~---~g--~~liiNtsDRv 219 (405)
T KOG1273|consen 148 DDGDLNSSASH-GVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS--VQAIKQIIVSR---KG--RFLIINTSDRV 219 (405)
T ss_pred Ccccccccccc-ccccCCCCEEEEecCcceEEEEecchheeeeeeeech--heeeeEEEEec---cC--cEEEEecCCce
Confidence 111111 133333 34466778999999999999887665322 23377777662 22 22444499999
Q ss_pred EEEEECCCCCccccccCCCcccCC-CccceeeeccCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCCc
Q 000450 242 LQLVPISKESHLDREEGNGLCKSS-SQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGS 310 (1496)
Q Consensus 242 V~lWdl~~~~~~~~~~~~~l~~~e-k~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~~~l~d~~~ 310 (1496)
||++++..-... +..++. +.+ |-.++++..+. ..+.|+.+|.++..++...-.+-+|+...
T Consensus 220 IR~ye~~di~~~-~r~~e~--e~~~K~qDvVNk~~W-----k~ccfs~dgeYv~a~s~~aHaLYIWE~~~ 281 (405)
T KOG1273|consen 220 IRTYEISDIDDE-GRDGEV--EPEHKLQDVVNKLQW-----KKCCFSGDGEYVCAGSARAHALYIWEKSI 281 (405)
T ss_pred EEEEehhhhccc-CccCCc--ChhHHHHHHHhhhhh-----hheeecCCccEEEeccccceeEEEEecCC
Confidence 999998743100 111111 111 23345555554 67888999999887765544444565543
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.2e-12 Score=140.38 Aligned_cols=166 Identities=19% Similarity=0.314 Sum_probs=129.0
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.++.|+.||.+.||.++ +...-+.+.+|..+|+|++|++| |+.|+|+|.|..|++|
T Consensus 37 ~lAvGc~nG~vvI~D~~---------------T~~iar~lsaH~~pi~sl~WS~d---------gr~LltsS~D~si~lw 92 (405)
T KOG1273|consen 37 YLAVGCANGRVVIYDFD---------------TFRIARMLSAHVRPITSLCWSRD---------GRKLLTSSRDWSIKLW 92 (405)
T ss_pred eeeeeccCCcEEEEEcc---------------ccchhhhhhccccceeEEEecCC---------CCEeeeecCCceeEEE
Confidence 89999999999995444 33455678899999999999998 8999999999999999
Q ss_pred ECCCCceEEEEcccCCCEEEEEECCCCC-----------------------------------------CCCCCCEEEEE
Q 000450 607 DLGSGNLITVMHHHVAPVRQIILSPPQT-----------------------------------------EHPWSDCFLSV 645 (1496)
Q Consensus 607 Dl~tg~~l~~~~~H~~~V~~l~~sPd~~-----------------------------------------~~~~g~~l~Sg 645 (1496)
|+..|.+++.++ ...+|+.+.|+|... ..+.|+++.+|
T Consensus 93 Dl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitG 171 (405)
T KOG1273|consen 93 DLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITG 171 (405)
T ss_pred eccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEe
Confidence 999999888775 345666666666311 14678899999
Q ss_pred eCCCcEEEEECCCCcEEEEecCCC-C-----------------------------------------------------C
Q 000450 646 GEDFSVALASLETLRVERMFPGHP-N-----------------------------------------------------Y 671 (1496)
Q Consensus 646 s~DgsV~lWdl~~~~~l~~~~gH~-~-----------------------------------------------------~ 671 (1496)
...|.+.++|.++.+|+..++-.. . .
T Consensus 172 tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~ 251 (405)
T KOG1273|consen 172 TSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ 251 (405)
T ss_pred cCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence 999999999988766655443111 1 1
Q ss_pred cEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCcee
Q 000450 672 PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMF 724 (1496)
Q Consensus 672 V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~ 724 (1496)
-.+++|+.+|.|++.++.- -..+|||+-..|.+++.+.|..+....
T Consensus 252 Wk~ccfs~dgeYv~a~s~~-------aHaLYIWE~~~GsLVKILhG~kgE~l~ 297 (405)
T KOG1273|consen 252 WKKCCFSGDGEYVCAGSAR-------AHALYIWEKSIGSLVKILHGTKGEELL 297 (405)
T ss_pred hhheeecCCccEEEecccc-------ceeEEEEecCCcceeeeecCCchhhee
Confidence 2346788888888776643 268999999999999999998876655
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.6e-12 Score=139.85 Aligned_cols=205 Identities=17% Similarity=0.204 Sum_probs=145.8
Q ss_pred CccEEEEEeeccccccCC---EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000450 509 EKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1496)
Q Consensus 509 ~~~Vts~~~~s~~~f~P~---~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~ 585 (1496)
.+.|.+++ |+|. .+++|+-||+|++|..+. .....+ +....|.++|.+++|+.|
T Consensus 27 ~DsIS~l~------FSP~~~~~~~A~SWD~tVR~wevq~------------~g~~~~-ka~~~~~~PvL~v~Wsdd---- 83 (347)
T KOG0647|consen 27 EDSISALA------FSPQADNLLAAGSWDGTVRIWEVQN------------SGQLVP-KAQQSHDGPVLDVCWSDD---- 83 (347)
T ss_pred ccchheeE------eccccCceEEecccCCceEEEEEec------------CCcccc-hhhhccCCCeEEEEEccC----
Confidence 46788888 5552 677999999999965541 000111 345679999999999987
Q ss_pred ccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000450 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF 665 (1496)
Q Consensus 586 ~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~ 665 (1496)
+..+++|+.|+.+++||+.+++ ...+..|.++|..+.|-+.. .-.||++||.|++++.||.+...++.++
T Consensus 84 -----gskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~----~~~cl~TGSWDKTlKfWD~R~~~pv~t~ 153 (347)
T KOG0647|consen 84 -----GSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGM----NYQCLVTGSWDKTLKFWDTRSSNPVATL 153 (347)
T ss_pred -----CceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCC----CcceeEecccccceeecccCCCCeeeee
Confidence 8999999999999999999995 56777899999999997762 1359999999999999999875443332
Q ss_pred c-------------------------------------CCCC----CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEE
Q 000450 666 P-------------------------------------GHPN----YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1496)
Q Consensus 666 ~-------------------------------------gH~~----~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VW 704 (1496)
. .+.+ .+.+|+...|.+..+.|+-. |.+.|-
T Consensus 154 ~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE--------Grv~iq 225 (347)
T KOG0647|consen 154 QLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE--------GRVAIQ 225 (347)
T ss_pred eccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec--------ceEEEE
Confidence 1 1112 35777877777777888887 889888
Q ss_pred ECCCC--eEEEEEeCCCCCcee---eeeecccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 705 DVKTG--ARERVLRGTASHSMF---DHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 705 Dl~tg--~~~~~l~gh~a~vi~---~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
.+..+ +.-.+++-|...... +-..+++.++... +.++.+..||++..|+-
T Consensus 226 ~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-----------gtlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 226 YIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-----------GTLVTAGSDGTFSFWDK 280 (347)
T ss_pred ecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc-----------ceEEEecCCceEEEecc
Confidence 88776 444566666643211 1122333444333 34556677999999984
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=149.66 Aligned_cols=214 Identities=16% Similarity=0.212 Sum_probs=164.0
Q ss_pred cccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccC-----CcceEEEE-ecCCccEEEE
Q 000450 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN-----SHVSRQYF-LGHTGAVLCL 576 (1496)
Q Consensus 503 ~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~-----s~~~~~~l-~gH~~~V~~L 576 (1496)
..+..|.-.++++++.++.. +...++.+|+|.- |+...+-+-. ..|... .+.+...- ++|...+.++
T Consensus 136 ~~~~~H~~s~~~vals~d~~----~~fsask~g~i~k--w~v~tgk~~~-~i~~~~ev~k~~~~~~k~~r~~h~keil~~ 208 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDK----RVFSASKDGTILK--WDVLTGKKDR-YIIERDEVLKSHGNPLKESRKGHVKEILTL 208 (479)
T ss_pred eeeccccCcceEEEeecccc----ceeecCCCcceee--eehhcCcccc-cccccchhhhhccCCCCcccccccceeEEE
Confidence 44678899999999666665 8999999997765 6533221100 011110 01111111 4899999999
Q ss_pred EEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEEC
Q 000450 577 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1496)
Q Consensus 577 a~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl 656 (1496)
+.++| +++|++|+.|..|.|||..+.+.++.|.+|.+.|.+++|-.. .+.+.++|.|++|++|++
T Consensus 209 avS~D---------gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g------t~~lys~s~Drsvkvw~~ 273 (479)
T KOG0299|consen 209 AVSSD---------GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG------TSELYSASADRSVKVWSI 273 (479)
T ss_pred EEcCC---------CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC------ccceeeeecCCceEEEeh
Confidence 99998 899999999999999999999999999999999999999776 678999999999999999
Q ss_pred CCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccc
Q 000450 657 ETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSI 736 (1496)
Q Consensus 657 ~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~ 736 (1496)
+....+.++-||.+.|..|.-..-++.+-+|+.| +++++|++.. +.--++.||.+..-++.|.++
T Consensus 274 ~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrD--------rT~rlwKi~e-esqlifrg~~~sidcv~~In~------ 338 (479)
T KOG0299|consen 274 DQLSYVETLYGHQDGVLGIDALSRERCVTVGGRD--------RTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND------ 338 (479)
T ss_pred hHhHHHHHHhCCccceeeechhcccceEEecccc--------ceeEEEeccc-cceeeeeCCCCCeeeEEEecc------
Confidence 9999999999999999999988888888888898 9999999943 334467788765555555422
Q ss_pred cceEEcCCccccccceeeccCCcEEeecc
Q 000450 737 SGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 737 sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
.+++.=+.||.|-.|.+
T Consensus 339 ------------~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 339 ------------EHFVSGSDNGSIALWSL 355 (479)
T ss_pred ------------cceeeccCCceEEEeee
Confidence 22333344888999986
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-11 Score=136.57 Aligned_cols=187 Identities=16% Similarity=0.116 Sum_probs=126.7
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
+++.+.+..+.+|++. |++.+.+......-+..++.++.. .++.++..-+++| |....+-|. ..
T Consensus 202 imsas~dt~i~lw~lk-----Gq~L~~idtnq~~n~~aavSP~GR----Fia~~gFTpDVkV--wE~~f~kdG-----~f 265 (420)
T KOG2096|consen 202 IMSASLDTKICLWDLK-----GQLLQSIDTNQSSNYDAAVSPDGR----FIAVSGFTPDVKV--WEPIFTKDG-----TF 265 (420)
T ss_pred EEEecCCCcEEEEecC-----CceeeeeccccccccceeeCCCCc----EEEEecCCCCceE--EEEEeccCc-----ch
Confidence 4555666778888875 344444433333333344444444 6777777888999 543332111 11
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCC----C---ceEEEE----cccCCCEEE
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS----G---NLITVM----HHHVAPVRQ 626 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~t----g---~~l~~~----~~H~~~V~~ 626 (1496)
+.-..+..|+||+..|+.++|+++ .+.++|.|.||++++||++- + +.+.++ ..-.+.-..
T Consensus 266 qev~rvf~LkGH~saV~~~aFsn~---------S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~R 336 (420)
T KOG2096|consen 266 QEVKRVFSLKGHQSAVLAAAFSNS---------STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVR 336 (420)
T ss_pred hhhhhhheeccchhheeeeeeCCC---------cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceE
Confidence 222345678999999999999997 78999999999999999862 1 222222 122233348
Q ss_pred EEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEec-CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000450 627 IILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 627 l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~-gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWD 705 (1496)
+.++|+ |+.|+.. .-.+++++..++++....+. .|...|.++.|+++|+|+++++. ..++|.-
T Consensus 337 L~lsP~------g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd---------r~vrv~~ 400 (420)
T KOG2096|consen 337 LELSPS------GDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD---------RYVRVIR 400 (420)
T ss_pred EEeCCC------CcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc---------eeeeeec
Confidence 999998 7766654 34679999999988776664 58899999999999999998654 5777764
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-12 Score=153.89 Aligned_cols=245 Identities=16% Similarity=0.155 Sum_probs=165.2
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccC-------C
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH-------N 549 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~-------d 549 (1496)
++...+.+++++.||+......|.. .+.+|...|.+.++.+ +.|..+++|+.||.|.||.. ..+. +
T Consensus 114 ~lVsasGDsT~r~Wdvk~s~l~G~~--~~~GH~~SvkS~cf~~---~n~~vF~tGgRDg~illWD~--R~n~~d~~e~~~ 186 (720)
T KOG0321|consen 114 LLVSASGDSTIRPWDVKTSRLVGGR--LNLGHTGSVKSECFMP---TNPAVFCTGGRDGEILLWDC--RCNGVDALEEFD 186 (720)
T ss_pred eEEEccCCceeeeeeeccceeecce--eecccccccchhhhcc---CCCcceeeccCCCcEEEEEE--eccchhhHHHHh
Confidence 3556667889999999988776543 4689999999988554 33458999999999999543 2221 0
Q ss_pred CC----CCccccCC---cceEEEEecCCcc----EEEEEEecCCCCcccCcCCCEEEEEeC-CCcEEEEECCCCceE---
Q 000450 550 SP----GASLKVNS---HVSRQYFLGHTGA----VLCLAAHRMVGTAKGWSFNEVLVSGSM-DCSIRIWDLGSGNLI--- 614 (1496)
Q Consensus 550 ~~----~~~~d~~s---~~~~~~l~gH~~~----V~~La~spd~~~~~~~~~~~~L~SGs~-DgtV~lWDl~tg~~l--- 614 (1496)
.. .+.-.... .+.++.-..|.+. |+.+.| .| ...|||+|. |+.|+|||+++....
T Consensus 187 ~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-kD---------e~tlaSaga~D~~iKVWDLRk~~~~~r~ 256 (720)
T KOG0321|consen 187 NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-KD---------ESTLASAGAADSTIKVWDLRKNYTAYRQ 256 (720)
T ss_pred hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE-ec---------cceeeeccCCCcceEEEeeccccccccc
Confidence 00 00000000 0111222344444 444555 34 688998887 999999999865422
Q ss_pred -----EEEccc---CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC--cEEEEecCCCCCc--EEEEEcCCCC
Q 000450 615 -----TVMHHH---VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL--RVERMFPGHPNYP--AKVVWDCPRG 682 (1496)
Q Consensus 615 -----~~~~~H---~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~--~~l~~~~gH~~~V--~~V~~spdg~ 682 (1496)
..+..| .-.+.++..... |.++...|.|++|.+||+... .++..+.+|...- ..-..+||+.
T Consensus 257 ep~~~~~~~t~skrs~G~~nL~lDss------Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~ 330 (720)
T KOG0321|consen 257 EPRGSDKYPTHSKRSVGQVNLILDSS------GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC 330 (720)
T ss_pred CCCcccCccCcccceeeeEEEEecCC------CCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc
Confidence 223333 235667776655 777777777999999999764 3556666665422 2335689999
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEECCCCeE-EEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEE
Q 000450 683 YIACLCRDHSRTSDAVDVLFIWDVKTGAR-ERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFR 761 (1496)
Q Consensus 683 ~L~tgs~D~sg~~D~dg~V~VWDl~tg~~-~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir 761 (1496)
++++|+.| ...|+|.+.+-+. ...+.||.-++..+.+++ +....++.++.|.+++
T Consensus 331 ~l~SgSsd--------~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p----------------S~~t~v~TcSdD~~~k 386 (720)
T KOG0321|consen 331 SLLSGSSD--------EQAYIWVVSSPEAPPALLLGHTREVTTVRWLP----------------SATTPVATCSDDFRVK 386 (720)
T ss_pred eEeccCCC--------cceeeeeecCccCChhhhhCcceEEEEEeecc----------------ccCCCceeeccCcceE
Confidence 99998888 9999999988654 678899998888887663 2334566778899999
Q ss_pred eeccccc
Q 000450 762 QSQIQND 768 (1496)
Q Consensus 762 ~W~l~~~ 768 (1496)
+|++.+.
T Consensus 387 iW~l~~~ 393 (720)
T KOG0321|consen 387 IWRLSNG 393 (720)
T ss_pred EEeccCc
Confidence 9998443
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-12 Score=139.18 Aligned_cols=220 Identities=19% Similarity=0.237 Sum_probs=148.0
Q ss_pred ccCCccEEEEEeec-cccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000450 506 VHKEKIVSSSMVIS-ESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1496)
Q Consensus 506 ~~h~~~Vts~~~~s-~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~ 584 (1496)
.+|.-.|++..+-+ +.. .+.+++.|.+++| || ..+.+....|+ -.+.|.+-+++|.-
T Consensus 98 ~~Hky~iss~~WyP~DtG----mFtssSFDhtlKV--WD-------------tnTlQ~a~~F~-me~~VYshamSp~a-- 155 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTG----MFTSSSFDHTLKV--WD-------------TNTLQEAVDFK-MEGKVYSHAMSPMA-- 155 (397)
T ss_pred ccceeeeeeeEEeeecCc----eeecccccceEEE--ee-------------cccceeeEEee-cCceeehhhcChhh--
Confidence 45666777765333 222 7889999999999 43 32333333332 34567777888861
Q ss_pred cccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cEEE
Q 000450 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVER 663 (1496)
Q Consensus 585 ~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~-~~l~ 663 (1496)
....++++|..|-.|++-|+.+|.+-+++.+|.+.|.+|.|+|.. .-.|++|+.|+.|++||++.- .|.+
T Consensus 156 ----~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~-----e~vLatgsaDg~irlWDiRrasgcf~ 226 (397)
T KOG4283|consen 156 ----MSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS-----EWVLATGSADGAIRLWDIRRASGCFR 226 (397)
T ss_pred ----hcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc-----eeEEEecCCCceEEEEEeecccceeE
Confidence 124688899999999999999999999999999999999999983 447899999999999999864 3433
Q ss_pred Ee--------------cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeec
Q 000450 664 MF--------------PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1496)
Q Consensus 664 ~~--------------~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~ 729 (1496)
.+ ..|.+.|..++|+.|+.++++.+.| ..+++|+++.|+---.-.|...+.-..+|--
T Consensus 227 ~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd--------~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~ 298 (397)
T KOG4283|consen 227 VLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD--------DRIRVWNMESGRNTLREFGPIIHNQTTSFAV 298 (397)
T ss_pred EeecccCccCccccccccccceeeeeeecccchhhhhccCc--------cceEEeecccCcccccccccccccccccceE
Confidence 33 3566788999999999999999998 8999999999865322222111111100000
Q ss_pred ccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 730 GISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 730 ~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
.+. ...++....--...+--++++.+...||.|+.
T Consensus 299 ~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~ 333 (397)
T KOG4283|consen 299 HIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST 333 (397)
T ss_pred EEe-ecccceEEEEecCCeEEEEEccCceEEEeeec
Confidence 000 01111111111124455677777888888875
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.1e-12 Score=142.24 Aligned_cols=173 Identities=17% Similarity=0.217 Sum_probs=140.6
Q ss_pred cccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000450 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1496)
Q Consensus 505 ~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~ 584 (1496)
+.+|+..|..+.+.+ |+-..|++|++|.+|.| |+.-.++ ....--+++..|.||+.+|.-++|||.
T Consensus 77 v~GHt~~vLDi~w~P---fnD~vIASgSeD~~v~v--W~IPe~~------l~~~ltepvv~L~gH~rrVg~V~wHPt--- 142 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCP---FNDCVIASGSEDTKVMV--WQIPENG------LTRDLTEPVVELYGHQRRVGLVQWHPT--- 142 (472)
T ss_pred ccCccccccccccCc---cCCceeecCCCCceEEE--EECCCcc------cccCcccceEEEeecceeEEEEeeccc---
Confidence 578999998877444 22248999999999999 4422211 111112678899999999999999996
Q ss_pred cccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 000450 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 664 (1496)
Q Consensus 585 ~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~ 664 (1496)
-.+.|+|++.|.+|.+||+.+|+.+.++. |...|+++.|+.+ |.++++.+.|+.|||||.++++.+..
T Consensus 143 -----A~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~d------Gs~l~TtckDKkvRv~dpr~~~~v~e 210 (472)
T KOG0303|consen 143 -----APNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRD------GSLLCTTCKDKKVRVIDPRRGTVVSE 210 (472)
T ss_pred -----chhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccC------CceeeeecccceeEEEcCCCCcEeee
Confidence 27899999999999999999999988887 9999999999999 99999999999999999999999988
Q ss_pred ecCCCC-CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 665 FPGHPN-YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 665 ~~gH~~-~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
-.+|.+ ....+.|-.+++++-||-. ..++ ..+-+||...
T Consensus 211 ~~~heG~k~~Raifl~~g~i~tTGfs---r~se--Rq~aLwdp~n 250 (472)
T KOG0303|consen 211 GVAHEGAKPARAIFLASGKIFTTGFS---RMSE--RQIALWDPNN 250 (472)
T ss_pred cccccCCCcceeEEeccCceeeeccc---cccc--cceeccCccc
Confidence 888876 5677889899996555543 3334 7899999865
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.8e-12 Score=138.78 Aligned_cols=199 Identities=17% Similarity=0.191 Sum_probs=145.2
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
+.+++.++.++++|.... .+... ..|..++.+.+|..+. .+++|+.||.|+.++..
T Consensus 28 LLvssWDgslrlYdv~~~----~l~~~-~~~~~plL~c~F~d~~-----~~~~G~~dg~vr~~Dln-------------- 83 (323)
T KOG1036|consen 28 LLVSSWDGSLRLYDVPAN----SLKLK-FKHGAPLLDCAFADES-----TIVTGGLDGQVRRYDLN-------------- 83 (323)
T ss_pred EEEEeccCcEEEEeccch----hhhhh-eecCCceeeeeccCCc-----eEEEeccCceEEEEEec--------------
Confidence 455567778888887654 22222 3477888888755443 69999999999995443
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCC
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~ 637 (1496)
++ ....+..|...|.|+.+.+. ...+++||.|++|++||.+.......+.. ...|.++...
T Consensus 84 -~~-~~~~igth~~~i~ci~~~~~---------~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~------- 144 (323)
T KOG1036|consen 84 -TG-NEDQIGTHDEGIRCIEYSYE---------VGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS------- 144 (323)
T ss_pred -CC-cceeeccCCCceEEEEeecc---------CCeEEEcccCccEEEEecccccccccccc-CceEEEEecc-------
Confidence 22 23445679999999999986 68899999999999999986544444433 3467777765
Q ss_pred CCCEEEEEeCCCcEEEEECCCC---------------cEEE---------------------------------EecCCC
Q 000450 638 WSDCFLSVGEDFSVALASLETL---------------RVER---------------------------------MFPGHP 669 (1496)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~~~---------------~~l~---------------------------------~~~gH~ 669 (1496)
++.|+.|+.|..|.+||+++. ++++ .|..|.
T Consensus 145 -g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr 223 (323)
T KOG1036|consen 145 -GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHR 223 (323)
T ss_pred -CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeee
Confidence 457888888888888888753 1222 222342
Q ss_pred C---------CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000450 670 N---------YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1496)
Q Consensus 670 ~---------~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~ 728 (1496)
. +|++|+|+|-.++++||+.| |.|-+||+.+.+.++.+.+-...+-...||
T Consensus 224 ~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD--------G~V~~Wd~~~rKrl~q~~~~~~SI~slsfs 283 (323)
T KOG1036|consen 224 LSEKDTEIIYPVNAIAFHPIHGTFATGGSD--------GIVNIWDLFNRKRLKQLAKYETSISSLSFS 283 (323)
T ss_pred cccCCceEEEEeceeEeccccceEEecCCC--------ceEEEccCcchhhhhhccCCCCceEEEEec
Confidence 2 78999999999999999998 999999999999999988775444444455
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.1e-12 Score=146.92 Aligned_cols=227 Identities=15% Similarity=0.218 Sum_probs=169.2
Q ss_pred CCCCcccceeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccC
Q 000450 469 ENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH 548 (1496)
Q Consensus 469 ~~dG~~i~~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~ 548 (1496)
-+||. .+.+..+-+++.+||+..+.+..+. .+..-.....+++..++.. ..+.++.||.|.| ||
T Consensus 474 ~pdgr---tLivGGeastlsiWDLAapTprika--eltssapaCyALa~spDak----vcFsccsdGnI~v--wD----- 537 (705)
T KOG0639|consen 474 LPDGR---TLIVGGEASTLSIWDLAAPTPRIKA--ELTSSAPACYALAISPDAK----VCFSCCSDGNIAV--WD----- 537 (705)
T ss_pred cCCCc---eEEeccccceeeeeeccCCCcchhh--hcCCcchhhhhhhcCCccc----eeeeeccCCcEEE--EE-----
Confidence 34662 4777788899999999988774332 2222233445565444443 6778889999999 33
Q ss_pred CCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEE
Q 000450 549 NSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQII 628 (1496)
Q Consensus 549 d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~ 628 (1496)
......++.|.||++.+.||.+++| |..|-+|+-|.+||.||+++++.+... .....|.++-
T Consensus 538 --------Lhnq~~VrqfqGhtDGascIdis~d---------GtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg 599 (705)
T KOG0639|consen 538 --------LHNQTLVRQFQGHTDGASCIDISKD---------GTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLG 599 (705)
T ss_pred --------cccceeeecccCCCCCceeEEecCC---------CceeecCCCccceeehhhhhhhhhhhh-hhhhhheecc
Confidence 3344678999999999999999997 899999999999999999998765432 2356799999
Q ss_pred ECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 629 LSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 629 ~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
.+|. +..++.|-+.+.|.|.... +...+++.-|.+.|.+++|.+-|+++++.+.| +-+..|-+.-
T Consensus 600 ~cP~------~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkD--------nlLnawrtPy 664 (705)
T KOG0639|consen 600 YCPT------GDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKD--------NLLNAWRTPY 664 (705)
T ss_pred cCCC------ccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCch--------hhhhhccCcc
Confidence 9998 8999999999999988865 44456777899999999999999999999998 8999999988
Q ss_pred CeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccc
Q 000450 709 GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLL 751 (1496)
Q Consensus 709 g~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l 751 (1496)
|..+.....-. .++ .|+ ++.+ +..|.+|+-.....+
T Consensus 665 GasiFqskE~S-sVl---sCD-IS~d--dkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 665 GASIFQSKESS-SVL---SCD-ISFD--DKYIVTGSGDKKATV 700 (705)
T ss_pred ccceeeccccC-cce---eee-eccC--ceEEEecCCCcceEE
Confidence 88876655333 333 342 2222 445666665444333
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.2e-12 Score=144.96 Aligned_cols=164 Identities=15% Similarity=0.164 Sum_probs=133.2
Q ss_pred ccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000450 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1496)
Q Consensus 506 ~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~ 585 (1496)
.+|+..|-++++.... -+.|++|+.|.+|++ ||..++++..++..|.+.|.++.|+|.
T Consensus 240 ~gHTdavl~Ls~n~~~---~nVLaSgsaD~TV~l---------------WD~~~g~p~~s~~~~~k~Vq~l~wh~~---- 297 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNF---RNVLASGSADKTVKL---------------WDVDTGKPKSSITHHGKKVQTLEWHPY---- 297 (463)
T ss_pred ccchHHHHHHHhcccc---ceeEEecCCCceEEE---------------EEcCCCCcceehhhcCCceeEEEecCC----
Confidence 4677777665533322 248999999999999 446678999999999999999999996
Q ss_pred ccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cEEEE
Q 000450 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERM 664 (1496)
Q Consensus 586 ~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~-~~l~~ 664 (1496)
-.+.|++|+.|++|.+.|.+........-...+.|-.++|.|.. ...++++..||+|+-+|+|.. +++.+
T Consensus 298 ----~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~s-----e~~f~~~tddG~v~~~D~R~~~~~vwt 368 (463)
T KOG0270|consen 298 ----EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHS-----ENSFFVSTDDGTVYYFDIRNPGKPVWT 368 (463)
T ss_pred ----CceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCC-----ceeEEEecCCceEEeeecCCCCCceeE
Confidence 37899999999999999998533332222235679999999984 568889999999999999875 89999
Q ss_pred ecCCCCCcEEEEEcCCC-CEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 665 FPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 665 ~~gH~~~V~~V~~spdg-~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
+..|.++|.++++++.- .+|++++.| +.|++|++..
T Consensus 369 ~~AHd~~ISgl~~n~~~p~~l~t~s~d--------~~Vklw~~~~ 405 (463)
T KOG0270|consen 369 LKAHDDEISGLSVNIQTPGLLSTASTD--------KVVKLWKFDV 405 (463)
T ss_pred EEeccCCcceEEecCCCCcceeecccc--------ceEEEEeecC
Confidence 99999999999998765 467777777 9999999854
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-12 Score=164.65 Aligned_cols=217 Identities=15% Similarity=0.157 Sum_probs=165.1
Q ss_pred eeecccccCccccccccCCCC--CCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQ--AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGAS 554 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~--~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~ 554 (1496)
.++.+..+|.|-+|+...-.. ....+.+...|++.|..+.|.. |.++.+++|..||+|.||+...+... ..
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~---~q~nlLASGa~~geI~iWDlnn~~tP---~~- 154 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNP---FQGNLLASGADDGEILIWDLNKPETP---FT- 154 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccc---cCCceeeccCCCCcEEEeccCCcCCC---CC-
Confidence 355556777888888765211 1144556688999999977444 44468999999999999554432221 00
Q ss_pred cccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCC--CEEEEEECCC
Q 000450 555 LKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVA--PVRQIILSPP 632 (1496)
Q Consensus 555 ~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~--~V~~l~~sPd 632 (1496)
.+ -..-.+.|.||+|+.. ..+.|+||+.++++.|||++..+.+-.+..|.+ .+..+.|+|+
T Consensus 155 ----~~-----~~~~~~eI~~lsWNrk--------vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 155 ----PG-----SQAPPSEIKCLSWNRK--------VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD 217 (1049)
T ss_pred ----CC-----CCCCcccceEeccchh--------hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence 00 0113467999999875 378999999999999999999988888877765 3678999999
Q ss_pred CCCCCCCCEEEEEeCC---CcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCC-CEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 633 QTEHPWSDCFLSVGED---FSVALASLETL-RVERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 633 ~~~~~~g~~l~Sgs~D---gsV~lWdl~~~-~~l~~~~gH~~~V~~V~~spdg-~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
. ...++.++.| -.|.+||+|.- .+++.+.+|...|.++.|++.+ .+|++++.| +.|.+|+.+
T Consensus 218 ~-----aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD--------~~ii~wN~~ 284 (1049)
T KOG0307|consen 218 H-----ATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKD--------NRIICWNPN 284 (1049)
T ss_pred C-----ceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCC--------CCeeEecCC
Confidence 5 4566666654 47899999864 5678889999999999999977 788888888 999999999
Q ss_pred CCeEEEEEeCCCCCceeeeeecc
Q 000450 708 TGARERVLRGTASHSMFDHFCKG 730 (1496)
Q Consensus 708 tg~~~~~l~gh~a~vi~~~~~~~ 730 (1496)
||+.+..+........-++||++
T Consensus 285 tgEvl~~~p~~~nW~fdv~w~pr 307 (1049)
T KOG0307|consen 285 TGEVLGELPAQGNWCFDVQWCPR 307 (1049)
T ss_pred CceEeeecCCCCcceeeeeecCC
Confidence 99999999887777777889964
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=8e-12 Score=144.56 Aligned_cols=202 Identities=15% Similarity=0.089 Sum_probs=158.8
Q ss_pred ccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcce
Q 000450 483 CQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS 562 (1496)
Q Consensus 483 ~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~ 562 (1496)
..+.+++||+... .+...+.+|...|+++.|.-... +|+.++..|+|.|... .++..
T Consensus 99 ~~~~Vkiwdl~~k----l~hr~lkdh~stvt~v~YN~~De----yiAsvs~gGdiiih~~---------------~t~~~ 155 (673)
T KOG4378|consen 99 QSGCVKIWDLRAK----LIHRFLKDHQSTVTYVDYNNTDE----YIASVSDGGDIIIHGT---------------KTKQK 155 (673)
T ss_pred cCceeeehhhHHH----HHhhhccCCcceeEEEEecCCcc----eeEEeccCCcEEEEec---------------ccCcc
Confidence 4568999998742 34556789999999998554443 8999999999998332 23333
Q ss_pred EEEEecC-CccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEE-cccCCCEEEEEECCCCCCCCCCC
Q 000450 563 RQYFLGH-TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM-HHHVAPVRQIILSPPQTEHPWSD 640 (1496)
Q Consensus 563 ~~~l~gH-~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~-~~H~~~V~~l~~sPd~~~~~~g~ 640 (1496)
...|... ...|.-|.|+|. ...+|.+++.||+|.+||+....+++.+ ..|..|...|+|+|.+ ..
T Consensus 156 tt~f~~~sgqsvRll~ys~s--------kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn-----e~ 222 (673)
T KOG4378|consen 156 TTTFTIDSGQSVRLLRYSPS--------KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN-----EA 222 (673)
T ss_pred ccceecCCCCeEEEeecccc--------cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc-----cc
Confidence 3344333 234568889985 2568889999999999999877776554 5799999999999984 66
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC-CeEEEEEeCCC
Q 000450 641 CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTA 719 (1496)
Q Consensus 641 ~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t-g~~~~~l~gh~ 719 (1496)
+|++++.|+.|.+||....+....+. ...+..+|+|.++|-+|+.|... |.|+.||++. ...+.++..|.
T Consensus 223 l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~--------G~~i~YD~R~~k~Pv~v~sah~ 293 (673)
T KOG4378|consen 223 LLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSK--------GELIAYDMRSTKAPVAVRSAHD 293 (673)
T ss_pred eEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCC--------ceEEEEecccCCCCceEeeecc
Confidence 99999999999999998766654443 45578999999999999999988 9999999986 56799999999
Q ss_pred CCceeeeeec
Q 000450 720 SHSMFDHFCK 729 (1496)
Q Consensus 720 a~vi~~~~~~ 729 (1496)
+.+.++.|-+
T Consensus 294 ~sVt~vafq~ 303 (673)
T KOG4378|consen 294 ASVTRVAFQP 303 (673)
T ss_pred cceeEEEeee
Confidence 9988887663
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.6e-12 Score=149.09 Aligned_cols=258 Identities=15% Similarity=0.172 Sum_probs=169.6
Q ss_pred cccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEE--EecCCccEEEEEEec
Q 000450 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY--FLGHTGAVLCLAAHR 580 (1496)
Q Consensus 503 ~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~--l~gH~~~V~~La~sp 580 (1496)
..+..|...|..+.+.+... .||+++.|.+++. |+ +++..++.. +.||++.|.+++|+|
T Consensus 94 k~~~aH~nAifDl~wapge~----~lVsasGDsT~r~--Wd-------------vk~s~l~G~~~~~GH~~SvkS~cf~~ 154 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGES----LLVSASGDSTIRP--WD-------------VKTSRLVGGRLNLGHTGSVKSECFMP 154 (720)
T ss_pred cccccccceeEeeccCCCce----eEEEccCCceeee--ee-------------eccceeecceeecccccccchhhhcc
Confidence 44678999999988666554 8999999999998 44 444444444 889999999999999
Q ss_pred CCCCcccCcCCCEEEEEeCCCcEEEEECCCCc---------------------------eEEEEcccCCCEEE---EEEC
Q 000450 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---------------------------LITVMHHHVAPVRQ---IILS 630 (1496)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~---------------------------~l~~~~~H~~~V~~---l~~s 630 (1496)
. +...|++|+.||.|.|||++-.. .++....|...|.+ +.+.
T Consensus 155 ~--------n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f 226 (720)
T KOG0321|consen 155 T--------NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF 226 (720)
T ss_pred C--------CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE
Confidence 7 37899999999999999997321 12233445555555 5555
Q ss_pred CCCCCCCCCCEEEEEeC-CCcEEEEECCCCcEEE--------EecCC---CCCcEEEEEcCCCCEEEEEEcCCCCCCCCC
Q 000450 631 PPQTEHPWSDCFLSVGE-DFSVALASLETLRVER--------MFPGH---PNYPAKVVWDCPRGYIACLCRDHSRTSDAV 698 (1496)
Q Consensus 631 Pd~~~~~~g~~l~Sgs~-DgsV~lWdl~~~~~l~--------~~~gH---~~~V~~V~~spdg~~L~tgs~D~sg~~D~d 698 (1496)
.| ...|+|+|. |+.|+|||++...+.. .++.| .-.+.++.....|.+|.+.|.|
T Consensus 227 kD------e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD-------- 292 (720)
T KOG0321|consen 227 KD------ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD-------- 292 (720)
T ss_pred ec------cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC--------
Confidence 56 678888887 9999999998754322 22334 2256777777788999999999
Q ss_pred CEEEEEECCCC--eEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccccccccccccc
Q 000450 699 DVLFIWDVKTG--ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFST 776 (1496)
Q Consensus 699 g~V~VWDl~tg--~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~~~~~~~ 776 (1496)
++||.|++.+- ..+..+.||.-..+.+.-| +.+. +....++. .|....+|.+.+.+...+...
T Consensus 293 ~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~--lSpd--------~~~l~SgS-----sd~~ayiw~vs~~e~~~~~l~ 357 (720)
T KOG0321|consen 293 NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSE--LSPD--------DCSLLSGS-----SDEQAYIWVVSSPEAPPALLL 357 (720)
T ss_pred CcEEEEeccccCcCchhhccCcccceeeeeee--cCCC--------CceEeccC-----CCcceeeeeecCccCChhhhh
Confidence 99999999763 3466777776555444333 2222 33333333 388889998866554333222
Q ss_pred CCCCCccccccCCCCCCCCCCccccccccccccccCCCCcceEEEechhhhcccc
Q 000450 777 ISEPSASHVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGIATLSFDLASLMFPY 831 (1496)
Q Consensus 777 ~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~fd~e~l~~~~ 831 (1496)
-+...-.-++ . .|. .+.|+- +| -.++.+..++|++-+.+.
T Consensus 358 Ght~eVt~V~------w---~pS----~~t~v~-Tc-SdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 358 GHTREVTTVR------W---LPS----ATTPVA-TC-SDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred CcceEEEEEe------e---ccc----cCCCce-ee-ccCcceEEEeccCchhhc
Confidence 1111000000 0 111 122442 56 467888889998777654
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-11 Score=149.73 Aligned_cols=229 Identities=18% Similarity=0.183 Sum_probs=173.2
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
+.+...++.++.|+...... .-.++..+...|.+++.-+ ..+++|+.+++|.++.++.
T Consensus 28 i~tcgsdg~ir~~~~~sd~e---~P~ti~~~g~~v~~ia~~s------~~f~~~s~~~tv~~y~fps------------- 85 (933)
T KOG1274|consen 28 ICTCGSDGDIRKWKTNSDEE---EPETIDISGELVSSIACYS------NHFLTGSEQNTVLRYKFPS------------- 85 (933)
T ss_pred EEEecCCCceEEeecCCccc---CCchhhccCceeEEEeecc------cceEEeeccceEEEeeCCC-------------
Confidence 45556677888898765421 1112233667777766322 2789999999999976652
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCC
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~ 637 (1496)
++....+.--+-++++++|+-+ |.+++.||.|-.|++-++.......++++|.++|.+|.|+|.
T Consensus 86 --~~~~~iL~Rftlp~r~~~v~g~---------g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~----- 149 (933)
T KOG1274|consen 86 --GEEDTILARFTLPIRDLAVSGS---------GKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPK----- 149 (933)
T ss_pred --CCccceeeeeeccceEEEEecC---------CcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCC-----
Confidence 2222223334557889999876 899999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCC--------CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000450 638 WSDCFLSVGEDFSVALASLETLRVERMFPGH--------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH--------~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg 709 (1496)
++.||+.+.||.|++||++++.+..++.+- ...+..++|+|++..+++.+.| +.|++|+..++
T Consensus 150 -~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d--------~~Vkvy~r~~w 220 (933)
T KOG1274|consen 150 -GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD--------NTVKVYSRKGW 220 (933)
T ss_pred -CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC--------CeEEEEccCCc
Confidence 999999999999999999999887776542 2345788999999888888888 99999999999
Q ss_pred eEEEEEeCCCCCc--eeeeeecccccccccceEEcCCccccccceeeccCCcEEeeccccccc
Q 000450 710 ARERVLRGTASHS--MFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER 770 (1496)
Q Consensus 710 ~~~~~l~gh~a~v--i~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~ 770 (1496)
+....|.+-.... ....|. .+|.+..++.+ |+.|.+|+.+..++
T Consensus 221 e~~f~Lr~~~~ss~~~~~~ws------------PnG~YiAAs~~-----~g~I~vWnv~t~~~ 266 (933)
T KOG1274|consen 221 ELQFKLRDKLSSSKFSDLQWS------------PNGKYIAASTL-----DGQILVWNVDTHER 266 (933)
T ss_pred eeheeecccccccceEEEEEc------------CCCcEEeeecc-----CCcEEEEecccchh
Confidence 9888876543322 222232 22666666555 99999999886554
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-12 Score=149.42 Aligned_cols=206 Identities=14% Similarity=0.118 Sum_probs=153.6
Q ss_pred ecccccCccccccccCCCC---CCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000450 479 DLTFCQDTVPRSEHVDSRQ---AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1496)
Q Consensus 479 ~~s~~~~~i~lWd~~~~~~---~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~ 555 (1496)
..+...+-+++||+..+.. ..++. .......+++..+.++.. .|++|++-.++.| ||+.
T Consensus 434 VyTgGkgcVKVWdis~pg~k~PvsqLd--cl~rdnyiRSckL~pdgr----tLivGGeastlsi--WDLA---------- 495 (705)
T KOG0639|consen 434 VYTGGKGCVKVWDISQPGNKSPVSQLD--CLNRDNYIRSCKLLPDGR----TLIVGGEASTLSI--WDLA---------- 495 (705)
T ss_pred eEecCCCeEEEeeccCCCCCCcccccc--ccCcccceeeeEecCCCc----eEEeccccceeee--eecc----------
Confidence 3444567899999876422 11111 122245677777666665 8999999888998 5521
Q ss_pred ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCC
Q 000450 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE 635 (1496)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~ 635 (1496)
..+......+..-.-...+|+.+|| .++.+++..||.|.|||+.+...++.|.+|+..+.||.++++
T Consensus 496 -apTprikaeltssapaCyALa~spD---------akvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~d--- 562 (705)
T KOG0639|consen 496 -APTPRIKAELTSSAPACYALAISPD---------AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKD--- 562 (705)
T ss_pred -CCCcchhhhcCCcchhhhhhhcCCc---------cceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCC---
Confidence 1122222233333345678899998 799999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 636 HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 636 ~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
|..|.+|+-|.+||.||+++++.+.... ..+.|.++..+|.+.+|++|-.+ +.+.|-.. ++.....+
T Consensus 563 ---GtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMen--------s~vevlh~-skp~kyql 629 (705)
T KOG0639|consen 563 ---GTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMEN--------SNVEVLHT-SKPEKYQL 629 (705)
T ss_pred ---CceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeeccc--------CcEEEEec-CCccceee
Confidence 8999999999999999999988765532 34579999999999999999887 66666554 34445677
Q ss_pred eCCCCCceeeeee
Q 000450 716 RGTASHSMFDHFC 728 (1496)
Q Consensus 716 ~gh~a~vi~~~~~ 728 (1496)
.-|.+.++.+.|.
T Consensus 630 hlheScVLSlKFa 642 (705)
T KOG0639|consen 630 HLHESCVLSLKFA 642 (705)
T ss_pred cccccEEEEEEec
Confidence 7788888887765
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-12 Score=165.21 Aligned_cols=200 Identities=19% Similarity=0.211 Sum_probs=155.5
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.|+.|.+||.|.+|+-+.+.. -.....+.++..|++.|..|.|++. .+.+|+||+.||.|.||
T Consensus 82 lIaGG~edG~I~ly~p~~~~~---------~~~~~~la~~~~h~G~V~gLDfN~~--------q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIA---------NASEEVLATKSKHTGPVLGLDFNPF--------QGNLLASGADDGEILIW 144 (1049)
T ss_pred eeeccccCCceEEecchhhcc---------CcchHHHhhhcccCCceeeeecccc--------CCceeeccCCCCcEEEe
Confidence 588889999999954332211 1123456677889999999999997 36799999999999999
Q ss_pred ECCCCceEEEEc--ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC--CcEEEEEcCCCC
Q 000450 607 DLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN--YPAKVVWDCPRG 682 (1496)
Q Consensus 607 Dl~tg~~l~~~~--~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~--~V~~V~~spdg~ 682 (1496)
|+...+.-..+. .-...|.+++|+... .++|+|++.++.+.|||++..+.+..+..|.+ .+..+.|+|+..
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkv-----qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKV-----SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA 219 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhh-----hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc
Confidence 998755444432 135679999998764 78999999999999999999988888876665 467899999876
Q ss_pred -EEEEEEcCCCCCCCCCCEEEEEECCCC-eEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcE
Q 000450 683 -YIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTF 760 (1496)
Q Consensus 683 -~L~tgs~D~sg~~D~dg~V~VWDl~tg-~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~i 760 (1496)
.|++++.| |..-.|.+||++.- ..++++++|...++.+.+|. .....++++.+|+++
T Consensus 220 Tql~~As~d-----d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~----------------~D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 220 TQLLVASGD-----DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCP----------------QDPRLLLSSGKDNRI 278 (1049)
T ss_pred eeeeeecCC-----CCCceeEeecccccCCchhhhcccccceeeeccCC----------------CCchhhhcccCCCCe
Confidence 55556655 66679999999864 56899999999999988883 233456778889999
Q ss_pred Eeecccccc
Q 000450 761 RQSQIQNDE 769 (1496)
Q Consensus 761 r~W~l~~~e 769 (1496)
..|+.++.|
T Consensus 279 i~wN~~tgE 287 (1049)
T KOG0307|consen 279 ICWNPNTGE 287 (1049)
T ss_pred eEecCCCce
Confidence 999976544
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-09 Score=126.78 Aligned_cols=123 Identities=12% Similarity=0.105 Sum_probs=95.6
Q ss_pred cEEEEEEecCCCCcccCcCCCEE-EEEeCCCcEEEEECCCCceEEEEcccCC-------CEEEEEECCCCCCCCCCCEE-
Q 000450 572 AVLCLAAHRMVGTAKGWSFNEVL-VSGSMDCSIRIWDLGSGNLITVMHHHVA-------PVRQIILSPPQTEHPWSDCF- 642 (1496)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~~L-~SGs~DgtV~lWDl~tg~~l~~~~~H~~-------~V~~l~~sPd~~~~~~g~~l- 642 (1496)
...++.|+|+ +++| +++..|+.|++||+.+++.+..+..+.. ....+.|+|+ ++.+
T Consensus 158 ~~~~~~~s~d---------g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d------g~~~~ 222 (300)
T TIGR03866 158 RPRFAEFTAD---------GKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD------GKTAF 222 (300)
T ss_pred CccEEEECCC---------CCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC------CCEEE
Confidence 4577899987 6666 5666799999999999988776653321 1246889998 7764
Q ss_pred EEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEc-CCCCCCCCCCEEEEEECCCCeEEEEEeCC
Q 000450 643 LSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCR-DHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1496)
Q Consensus 643 ~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~-D~sg~~D~dg~V~VWDl~tg~~~~~l~gh 718 (1496)
++.+.++.+.+||+++++.+..+. +...+.+++|+|++++|++++. + ++|+|||++++++++.+...
T Consensus 223 ~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~--------~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 223 VALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVS--------NDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred EEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCC--------CeEEEEECCCCcEEEEEEcc
Confidence 445667789999999998876653 4457899999999999988754 4 89999999999998888654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-11 Score=134.99 Aligned_cols=206 Identities=15% Similarity=0.126 Sum_probs=152.0
Q ss_pred cccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEE-E-ecCCccEEEEEEec
Q 000450 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY-F-LGHTGAVLCLAAHR 580 (1496)
Q Consensus 503 ~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~-l-~gH~~~V~~La~sp 580 (1496)
..+++|.+.|++++|.++.. .+++.+.|+.|++|..+.+.. ...++++. + .+| -+.+.|.|
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK----~lat~~~Dr~Ir~w~~~DF~~----------~eHr~~R~nve~dh---pT~V~Fap 142 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGK----KLATISGDRSIRLWDVRDFEN----------KEHRCIRQNVEYDH---PTRVVFAP 142 (420)
T ss_pred hhhhccCCceeeeEEcCCCc----eeEEEeCCceEEEEecchhhh----------hhhhHhhccccCCC---ceEEEECC
Confidence 45799999999999888888 999999999999966542211 11122221 1 233 57889999
Q ss_pred CCCCcccCcCCCEEEEEeCCCcEEEEECCCCc---eEE---------EEcccCCCEEEEEECCCCCCCCCCCEEEEEeCC
Q 000450 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---LIT---------VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1496)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~---~l~---------~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~D 648 (1496)
| -..++++.-...++++|-+...+ .-+ .-+.|.-+|..+-..-. +.+++|++.|
T Consensus 143 D--------c~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~------~k~imsas~d 208 (420)
T KOG2096|consen 143 D--------CKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN------AKYIMSASLD 208 (420)
T ss_pred C--------cceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCC------ceEEEEecCC
Confidence 8 25677777777789999875322 111 12235556666666554 7899999999
Q ss_pred CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC---CCe-----EEEEEeCCCC
Q 000450 649 FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK---TGA-----RERVLRGTAS 720 (1496)
Q Consensus 649 gsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~---tg~-----~~~~l~gh~a 720 (1496)
..|.|||++ |+.+..+......-+..+.||+|+++++++.. --|+||++- .|+ .+..|.||++
T Consensus 209 t~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFT--------pDVkVwE~~f~kdG~fqev~rvf~LkGH~s 279 (420)
T KOG2096|consen 209 TKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT--------PDVKVWEPIFTKDGTFQEVKRVFSLKGHQS 279 (420)
T ss_pred CcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCC--------CCceEEEEEeccCcchhhhhhhheeccchh
Confidence 999999999 89988887666667788999999999998876 669999973 332 4577899999
Q ss_pred CceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 721 HSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 721 ~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
.+....|.+ .+..++++++||++|+|+.
T Consensus 280 aV~~~aFsn-----------------~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 280 AVLAAAFSN-----------------SSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred heeeeeeCC-----------------CcceeEEEecCCcEEEeec
Confidence 998876662 1234567889999999995
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.2e-12 Score=148.04 Aligned_cols=209 Identities=20% Similarity=0.217 Sum_probs=156.3
Q ss_pred ccccCCccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecC
Q 000450 504 DFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 581 (1496)
Q Consensus 504 ~~~~h~~~Vts~~~~s~~~f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd 581 (1496)
++..|...|++++ |+|. -+++++.||.+.+|+++.-. .-....-+++.+|++|.++|.|+++.+.
T Consensus 289 tl~s~~d~ir~l~------~~~sep~lit~sed~~lk~WnLqk~~-------~s~~~~~epi~tfraH~gPVl~v~v~~n 355 (577)
T KOG0642|consen 289 TLRSHDDCIRALA------FHPSEPVLITASEDGTLKLWNLQKAK-------KSAEKDVEPILTFRAHEGPVLCVVVPSN 355 (577)
T ss_pred eeecchhhhhhhh------cCCCCCeEEEeccccchhhhhhcccC-------CccccceeeeEEEecccCceEEEEecCC
Confidence 4556777777776 5544 89999999999996654200 0112234788999999999999999987
Q ss_pred CCCcccCcCCCEEEEEeCCCcEEEEECCCC----------ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcE
Q 000450 582 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSG----------NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 651 (1496)
Q Consensus 582 ~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg----------~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV 651 (1496)
++.+.||+.||+|+.|++... .+...+.||++.|+.+++++. .+.|++++.||+|
T Consensus 356 ---------~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~------~~~Llscs~DgTv 420 (577)
T KOG0642|consen 356 ---------GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST------KDRLLSCSSDGTV 420 (577)
T ss_pred ---------ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc------ccceeeecCCceE
Confidence 899999999999999965421 244788999999999999998 6789999999999
Q ss_pred EEEECCCCcE--------------------------------------------EEEecC-------CCCCcEEEEEcCC
Q 000450 652 ALASLETLRV--------------------------------------------ERMFPG-------HPNYPAKVVWDCP 680 (1496)
Q Consensus 652 ~lWdl~~~~~--------------------------------------------l~~~~g-------H~~~V~~V~~spd 680 (1496)
++|+.....+ ++.+.. -...+..|.++|.
T Consensus 421 r~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~ 500 (577)
T KOG0642|consen 421 RLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT 500 (577)
T ss_pred EeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC
Confidence 9998754322 011100 0124677899999
Q ss_pred CCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcE
Q 000450 681 RGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTF 760 (1496)
Q Consensus 681 g~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~i 760 (1496)
..+.+++..| +.|+++|..+|..+.....|...+..+.+. ++ |-. +...+.|+++
T Consensus 501 ~~~~~~~hed--------~~Ir~~dn~~~~~l~s~~a~~~svtslai~----~n--------g~~-----l~s~s~d~sv 555 (577)
T KOG0642|consen 501 ADITFTAHED--------RSIRFFDNKTGKILHSMVAHKDSVTSLAID----PN--------GPY-----LMSGSHDGSV 555 (577)
T ss_pred CCeeEecccC--------Cceecccccccccchheeeccceecceeec----CC--------Cce-----EEeecCCcee
Confidence 9999999888 999999999999999999888766665433 12 222 2233448999
Q ss_pred Eeecc
Q 000450 761 RQSQI 765 (1496)
Q Consensus 761 r~W~l 765 (1496)
+.|++
T Consensus 556 ~l~kl 560 (577)
T KOG0642|consen 556 RLWKL 560 (577)
T ss_pred ehhhc
Confidence 99876
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-10 Score=131.92 Aligned_cols=142 Identities=15% Similarity=0.216 Sum_probs=105.9
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccE--EEEEEecCCCCcccCcCCCEEEEEeCCCcEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAV--LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR 604 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V--~~La~spd~~~~~~~~~~~~L~SGs~DgtV~ 604 (1496)
.|+..+.+|.|.+ |+ .....+++.+.. .+.| ++++.+++ +.+||+||..|.|.
T Consensus 358 ~l~~~~~~GeV~v--~n-------------l~~~~~~~rf~D-~G~v~gts~~~S~n---------g~ylA~GS~~GiVN 412 (514)
T KOG2055|consen 358 ELLASGGTGEVYV--WN-------------LRQNSCLHRFVD-DGSVHGTSLCISLN---------GSYLATGSDSGIVN 412 (514)
T ss_pred EEEEEcCCceEEE--Ee-------------cCCcceEEEEee-cCccceeeeeecCC---------CceEEeccCcceEE
Confidence 4555556777766 33 333455555543 2333 45666665 78999999999999
Q ss_pred EEECCC------CceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEE--eCCCcEEEEECCCCcEEEEecCC---CCCcE
Q 000450 605 IWDLGS------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV--GEDFSVALASLETLRVERMFPGH---PNYPA 673 (1496)
Q Consensus 605 lWDl~t------g~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sg--s~DgsV~lWdl~~~~~l~~~~gH---~~~V~ 673 (1496)
|||.++ .+++..+..-+..|+++.|+|+ .+++|-+ ..+..+||-.+........|+.. -+.|+
T Consensus 413 IYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d------~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vt 486 (514)
T KOG2055|consen 413 IYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD------AQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVT 486 (514)
T ss_pred EeccchhhccCCCCchhhhhhhheeeeeeeeCcc------hhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceE
Confidence 999653 4567777777788999999999 7766554 45789999999887776666643 34689
Q ss_pred EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 674 ~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
|++|+|.+.||++|..+ |.|.+|.+.
T Consensus 487 c~aFSP~sG~lAvGNe~--------grv~l~kL~ 512 (514)
T KOG2055|consen 487 CMAFSPNSGYLAVGNEA--------GRVHLFKLH 512 (514)
T ss_pred EEEecCCCceEEeecCC--------CceeeEeec
Confidence 99999999999999998 999999864
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-10 Score=125.49 Aligned_cols=187 Identities=13% Similarity=0.084 Sum_probs=132.1
Q ss_pred cccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCC
Q 000450 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1496)
Q Consensus 503 ~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~ 582 (1496)
..+++|.+.+..++ |+-+.+++|+ ||.|+-|.|...........+|....+ .++=.---..|+++...|.
T Consensus 56 v~eqahdgpiy~~~------f~d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P--~~~~~~evPeINam~ldP~- 125 (325)
T KOG0649|consen 56 VPEQAHDGPIYYLA------FHDDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIP--MQVDAVEVPEINAMWLDPS- 125 (325)
T ss_pred eeccccCCCeeeee------eehhheeecc-CceEEEeeehhhhhhccchhhhhhcCc--cccCcccCCccceeEeccC-
Confidence 44589999999988 4444455554 699999999854432222334544322 1110111236888888886
Q ss_pred CCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000450 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1496)
Q Consensus 583 ~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l 662 (1496)
.+-++.++.|+.+..||+++|+..+++++|++.|.++.-... ...++||++||++|+||+++++++
T Consensus 126 --------enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~------~~qilsG~EDGtvRvWd~kt~k~v 191 (325)
T KOG0649|consen 126 --------ENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA------NGQILSGAEDGTVRVWDTKTQKHV 191 (325)
T ss_pred --------CCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc------CcceeecCCCccEEEEecccccee
Confidence 344555558999999999999999999999999999987433 457899999999999999999999
Q ss_pred EEecCCC----------CCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE--eCCCCCcee
Q 000450 663 RMFPGHP----------NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL--RGTASHSMF 724 (1496)
Q Consensus 663 ~~~~gH~----------~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l--~gh~a~vi~ 724 (1496)
.++.... ..|.+++ -+.++|++|+. ..+.+|.+++.++..++ .+|...+++
T Consensus 192 ~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgG---------p~lslwhLrsse~t~vfpipa~v~~v~F 254 (325)
T KOG0649|consen 192 SMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGG---------PKLSLWHLRSSESTCVFPIPARVHLVDF 254 (325)
T ss_pred EEeccccChhhcCcccCceeEEEe--ccCceEEecCC---------CceeEEeccCCCceEEEecccceeEeee
Confidence 8875322 1344444 45679998876 48999999998776655 454444443
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.3e-11 Score=139.62 Aligned_cols=239 Identities=13% Similarity=0.107 Sum_probs=169.7
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
.+.+..+..+++|......+.........+. .-.|+...+... +++.|+.+|.++| |+ .
T Consensus 50 vas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~----y~~sgG~~~~Vki--wd-------------l 108 (673)
T KOG4378|consen 50 VASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSL----YEISGGQSGCVKI--WD-------------L 108 (673)
T ss_pred EeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcce----eeeccCcCceeee--hh-------------h
Confidence 3455567778888877654433333333322 334444444443 8899999999999 44 3
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCC-CEEEEEECCCCCCC
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVA-PVRQIILSPPQTEH 636 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~-~V~~l~~sPd~~~~ 636 (1496)
....+++.+++|+..|+++.|+.. +.++++++..|-|.|..+.++..-..|....+ .|+-+.|+|..
T Consensus 109 ~~kl~hr~lkdh~stvt~v~YN~~---------DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~sk--- 176 (673)
T KOG4378|consen 109 RAKLIHRFLKDHQSTVTYVDYNNT---------DEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSK--- 176 (673)
T ss_pred HHHHHhhhccCCcceeEEEEecCC---------cceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccccc---
Confidence 334667889999999999999876 79999999999999999999988888876534 56688899973
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEe-cCCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 637 PWSDCFLSVGEDFSVALASLETLRVERMF-PGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 637 ~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~-~gH~~~V~~V~~spdg~-~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
...|.+++.||.|.+||+....++..+ ..|.++...|+|+|... .|++.+.| ..|++||+...+....
T Consensus 177 --r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D--------kki~~yD~~s~~s~~~ 246 (673)
T KOG4378|consen 177 --RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD--------KKINIYDIRSQASTDR 246 (673)
T ss_pred --ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEeccc--------ceEEEeecccccccce
Confidence 457888999999999999988887665 57999999999999654 66777887 9999999998777665
Q ss_pred EeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecccccccccccccC
Q 000450 715 LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTI 777 (1496)
Q Consensus 715 l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~e~~~~~~~~ 777 (1496)
+.... +-..+.|. . +|.+.+.+.. .|++.+++++......+-.++
T Consensus 247 l~y~~-Plstvaf~------~------~G~~L~aG~s-----~G~~i~YD~R~~k~Pv~v~sa 291 (673)
T KOG4378|consen 247 LTYSH-PLSTVAFS------E------CGTYLCAGNS-----KGELIAYDMRSTKAPVAVRSA 291 (673)
T ss_pred eeecC-Ccceeeec------C------CceEEEeecC-----CceEEEEecccCCCCceEeee
Confidence 54322 11122233 1 1333333333 788888888666555444443
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=124.64 Aligned_cols=201 Identities=19% Similarity=0.301 Sum_probs=140.1
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
+++.|..+|+|.+.....+..+.. .......+...++|.++|+.++|+. .+|++|+ ||.|+-|
T Consensus 24 ~l~agn~~G~iav~sl~sl~s~sa-----~~~gk~~iv~eqahdgpiy~~~f~d-----------~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 24 YLFAGNLFGDIAVLSLKSLDSGSA-----EPPGKLKIVPEQAHDGPIYYLAFHD-----------DFLLSGG-DGLVYGW 86 (325)
T ss_pred EEEEecCCCeEEEEEehhhhcccc-----CCCCCcceeeccccCCCeeeeeeeh-----------hheeecc-CceEEEe
Confidence 799999999999987765544311 1111234555689999999999983 6788887 5999988
Q ss_pred ECCCCce------E--EEEccc-----CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcE
Q 000450 607 DLGSGNL------I--TVMHHH-----VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPA 673 (1496)
Q Consensus 607 Dl~tg~~------l--~~~~~H-----~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~ 673 (1496)
.-+.... + .....| ...|+++.+.|. .+-++.++.|+.+.-||+++|+..+.++||.++|.
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~------enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH 160 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS------ENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH 160 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccC------CCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee
Confidence 7543211 0 111122 346889999988 55666666999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCcccccccee
Q 000450 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLP 753 (1496)
Q Consensus 674 ~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~ 753 (1496)
++.-......+++|+.| |++||||.+|++.+.++.....+..+- ++. +. ..|-...+...+-
T Consensus 161 ~vv~R~~~~qilsG~ED--------GtvRvWd~kt~k~v~~ie~yk~~~~lR-------p~~-g~--wigala~~edWlv 222 (325)
T KOG0649|consen 161 SVVGRNANGQILSGAED--------GTVRVWDTKTQKHVSMIEPYKNPNLLR-------PDW-GK--WIGALAVNEDWLV 222 (325)
T ss_pred eeeecccCcceeecCCC--------ccEEEEeccccceeEEeccccChhhcC-------ccc-Cc--eeEEEeccCceEE
Confidence 99997777788899998 999999999999998887655433221 000 00 0022223333344
Q ss_pred eccCCcEEeeccccc
Q 000450 754 IHEDGTFRQSQIQND 768 (1496)
Q Consensus 754 ~~~D~~ir~W~l~~~ 768 (1496)
+....++..|+|+..
T Consensus 223 CGgGp~lslwhLrss 237 (325)
T KOG0649|consen 223 CGGGPKLSLWHLRSS 237 (325)
T ss_pred ecCCCceeEEeccCC
Confidence 444567788988543
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4e-11 Score=141.85 Aligned_cols=210 Identities=17% Similarity=0.186 Sum_probs=160.8
Q ss_pred eeecccccCccccccccCCCCCC----CcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCC
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAG----DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPG 552 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~----~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~ 552 (1496)
.+.+...++++++|.+....... ..+.+|.+|.+.|-|+.+.+... .+.+|+.||+|+.|+.. .+.|
T Consensus 308 ~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~----~~ysgg~Dg~I~~w~~p--~n~d--- 378 (577)
T KOG0642|consen 308 VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE----HCYSGGIDGTIRCWNLP--PNQD--- 378 (577)
T ss_pred eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce----EEEeeccCceeeeeccC--CCCC---
Confidence 46677888999999994422222 45677899999999999877776 89999999999995433 2211
Q ss_pred CccccC-CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcc---c--------
Q 000450 553 ASLKVN-SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH---H-------- 620 (1496)
Q Consensus 553 ~~~d~~-s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~---H-------- 620 (1496)
..|.. ......++.||++.|+.+++|+. ...|++++.||||++|+.....+ .+|.. |
T Consensus 379 -p~ds~dp~vl~~~l~Ghtdavw~l~~s~~---------~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 379 -PDDSYDPSVLSGTLLGHTDAVWLLALSST---------KDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR 447 (577)
T ss_pred -cccccCcchhccceeccccceeeeeeccc---------ccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence 01111 11334568899999999999986 67799999999999999865433 11100 0
Q ss_pred -----------------------------------------CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 000450 621 -----------------------------------------VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 659 (1496)
Q Consensus 621 -----------------------------------------~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~ 659 (1496)
...+..+...|. +....++..|++|+++|..++
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~------~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT------ADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC------CCeeEecccCCceeccccccc
Confidence 012334444444 788899999999999999999
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCC
Q 000450 660 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 720 (1496)
Q Consensus 660 ~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a 720 (1496)
+.++....|...++++++.|+|.+|++++.| +.+++|.+....++.....|..
T Consensus 522 ~~l~s~~a~~~svtslai~~ng~~l~s~s~d--------~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 522 KILHSMVAHKDSVTSLAIDPNGPYLMSGSHD--------GSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred ccchheeeccceecceeecCCCceEEeecCC--------ceeehhhccchheeeccccccc
Confidence 9999999999999999999999999999998 9999999988888777776654
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3e-11 Score=139.61 Aligned_cols=166 Identities=17% Similarity=0.196 Sum_probs=129.2
Q ss_pred ccccCCccEEEEEeeccccccCC----EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEe
Q 000450 504 DFVHKEKIVSSSMVISESFYAPY----AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1496)
Q Consensus 504 ~~~~h~~~Vts~~~~s~~~f~P~----~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~s 579 (1496)
...-+...|++++ |+|. .+++|...|.|-+|+++. +. .+ ..-+..+..|.++|.++.|+
T Consensus 181 v~kv~~~Rit~l~------fHPt~~~~lva~GdK~G~VG~Wn~~~-~~-------~d---~d~v~~f~~hs~~Vs~l~F~ 243 (498)
T KOG4328|consen 181 VAKVTDRRITSLA------FHPTENRKLVAVGDKGGQVGLWNFGT-QE-------KD---KDGVYLFTPHSGPVSGLKFS 243 (498)
T ss_pred eeEecccceEEEE------ecccCcceEEEEccCCCcEEEEecCC-CC-------Cc---cCceEEeccCCccccceEec
Confidence 3466788999998 7774 788999999999966541 11 11 13356678999999999999
Q ss_pred cCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc---------------------------------------------eE
Q 000450 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---------------------------------------------LI 614 (1496)
Q Consensus 580 pd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~---------------------------------------------~l 614 (1496)
|. +...+++.|.||+|++=|++.+. ..
T Consensus 244 P~--------n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~ 315 (498)
T KOG4328|consen 244 PA--------NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY 315 (498)
T ss_pred CC--------ChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc
Confidence 97 26788899999999999987421 01
Q ss_pred EEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcE----EEEecCCCCCcEEEEEcCCCCEEEEEEcC
Q 000450 615 TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV----ERMFPGHPNYPAKVVWDCPRGYIACLCRD 690 (1496)
Q Consensus 615 ~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~----l~~~~gH~~~V~~V~~spdg~~L~tgs~D 690 (1496)
..+..|...|..|+++|.. ..+++|+|.|++++|||++.... +.....|...|.++.|||++..|+|.|.|
T Consensus 316 ~~~~lh~kKI~sv~~NP~~-----p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D 390 (498)
T KOG4328|consen 316 ENLRLHKKKITSVALNPVC-----PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQD 390 (498)
T ss_pred hhhhhhhcccceeecCCCC-----chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccC
Confidence 1133477789999999984 56999999999999999986432 23334699999999999999999999999
Q ss_pred CCCCCCCCCEEEEEECC
Q 000450 691 HSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 691 ~sg~~D~dg~V~VWDl~ 707 (1496)
..|+|||..
T Consensus 391 --------~~IRv~dss 399 (498)
T KOG4328|consen 391 --------NEIRVFDSS 399 (498)
T ss_pred --------CceEEeecc
Confidence 999999984
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.4e-11 Score=133.41 Aligned_cols=141 Identities=25% Similarity=0.361 Sum_probs=117.9
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.+|.|+.-|.|+|.+ ..++++...+.||.+.|+.+.++|+ ..++++|+|.|.+|++|
T Consensus 107 ~la~~G~~GvIrVid---------------~~~~~~~~~~~ghG~sINeik~~p~--------~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVID---------------VVSGQCSKNYRGHGGSINEIKFHPD--------RPQLVLSASKDHSVRLW 163 (385)
T ss_pred eEEeecceeEEEEEe---------------cchhhhccceeccCccchhhhcCCC--------CCcEEEEecCCceEEEE
Confidence 677777889999943 3456788889999999999999998 37899999999999999
Q ss_pred ECCCCceEEEEc---ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCc------EE---------------
Q 000450 607 DLGSGNLITVMH---HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR------VE--------------- 662 (1496)
Q Consensus 607 Dl~tg~~l~~~~---~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~------~l--------------- 662 (1496)
++++..++..|- +|.+.|.++.|+++ |..|+|+|.|+++++|++...+ +.
T Consensus 164 nI~~~~Cv~VfGG~egHrdeVLSvD~~~~------gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~ 237 (385)
T KOG1034|consen 164 NIQTDVCVAVFGGVEGHRDEVLSVDFSLD------GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTP 237 (385)
T ss_pred eccCCeEEEEecccccccCcEEEEEEcCC------CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcc
Confidence 999999998875 59999999999999 8999999999999999998321 00
Q ss_pred -E------EecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 663 -R------MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 663 -~------~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
. +-.-|.++|-|+.|- |+++++-+-+ +.|..|..
T Consensus 238 ~~~fp~fst~diHrnyVDCvrw~--gd~ilSksce--------naI~~w~p 278 (385)
T KOG1034|consen 238 KTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCE--------NAIVCWKP 278 (385)
T ss_pred ccccccccccccccchHHHHHHH--hhheeecccC--------ceEEEEec
Confidence 1 112477888888886 5788887776 89999987
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.5e-10 Score=123.90 Aligned_cols=217 Identities=12% Similarity=0.131 Sum_probs=153.0
Q ss_pred ccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEE-ecCCCC
Q 000450 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAA-HRMVGT 584 (1496)
Q Consensus 506 ~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~-spd~~~ 584 (1496)
.+|.+-|.++.|-..+ .++++++.|++++||..+. +..+-.+....+.|.+.|..+.| +|.
T Consensus 10 s~h~DlihdVs~D~~G----RRmAtCSsDq~vkI~d~~~-----------~s~~W~~Ts~Wrah~~Si~rV~WAhPE--- 71 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYG----RRMATCSSDQTVKIWDSTS-----------DSGTWSCTSSWRAHDGSIWRVVWAHPE--- 71 (361)
T ss_pred cCCcceeeeeeecccC----ceeeeccCCCcEEEEeccC-----------CCCceEEeeeEEecCCcEEEEEecCcc---
Confidence 4677778887633333 3999999999999954331 11222455667899999999999 665
Q ss_pred cccCcCCCEEEEEeCCCcEEEEECC---------CCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEE
Q 000450 585 AKGWSFNEVLVSGSMDCSIRIWDLG---------SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 655 (1496)
Q Consensus 585 ~~~~~~~~~L~SGs~DgtV~lWDl~---------tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWd 655 (1496)
+|+.+++++.|+++.||.-. ......++....+.|+.|.|.|.. .|-.+++++.||++|||+
T Consensus 72 -----fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h----lGLklA~~~aDG~lRIYE 142 (361)
T KOG2445|consen 72 -----FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH----LGLKLAAASADGILRIYE 142 (361)
T ss_pred -----ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchh----cceEEEEeccCcEEEEEe
Confidence 69999999999999999852 122456777788899999999973 367899999999999998
Q ss_pred CCCC------cEEEEec-------CCCCCcEEEEEcCC---CCEEEEEEcCCCCCCCCCCEEEEEECCCC----eEEEEE
Q 000450 656 LETL------RVERMFP-------GHPNYPAKVVWDCP---RGYIACLCRDHSRTSDAVDVLFIWDVKTG----ARERVL 715 (1496)
Q Consensus 656 l~~~------~~l~~~~-------gH~~~V~~V~~spd---g~~L~tgs~D~sg~~D~dg~V~VWDl~tg----~~~~~l 715 (1496)
..+- .....+. .+..+..||.|+|. ..+|++|+.+ .... .+.++||....+ ..+.++
T Consensus 143 A~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e-~a~~--~~~~~Iye~~e~~rKw~kva~L 219 (361)
T KOG2445|consen 143 APDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDE-DAPH--LNKVKIYEYNENGRKWLKVAEL 219 (361)
T ss_pred cCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEccc-CCcc--ccceEEEEecCCcceeeeehhc
Confidence 6542 2222222 35567789999874 4688888865 1211 258999987543 246778
Q ss_pred eCCCCCceeeeeecccccccccceEEcCCccccccceee-ccCCcEEeecccc
Q 000450 716 RGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPI-HEDGTFRQSQIQN 767 (1496)
Q Consensus 716 ~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~-~~D~~ir~W~l~~ 767 (1496)
.+|+..+..+.|.|.+ ..+..++.+ +.|| +|+|+++.
T Consensus 220 ~d~~dpI~di~wAPn~--------------Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 220 PDHTDPIRDISWAPNI--------------GRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred CCCCCcceeeeecccc--------------CCceeeEEEeecCc-EEEEEEee
Confidence 8999988888777421 122333333 3466 99999854
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-10 Score=128.27 Aligned_cols=123 Identities=23% Similarity=0.259 Sum_probs=109.9
Q ss_pred CCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCC
Q 000450 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1496)
Q Consensus 569 H~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~D 648 (1496)
|......++|.-+. . ..+.+|+.||.-|.|+|.|+.++++...+.+|.+.|..+.+.|+. .++++|+|.|
T Consensus 88 ~~Esfytcsw~yd~--~---~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~-----~qlvls~SkD 157 (385)
T KOG1034|consen 88 HDESFYTCSWSYDS--N---TGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR-----PQLVLSASKD 157 (385)
T ss_pred CCcceEEEEEEecC--C---CCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCC-----CcEEEEecCC
Confidence 66667778887762 1 125689999999999999999999999999999999999999985 6799999999
Q ss_pred CcEEEEECCCCcEEEEe---cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000450 649 FSVALASLETLRVERMF---PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 649 gsV~lWdl~~~~~l~~~---~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg 709 (1496)
.+||+||+++..|+..| .||.+.|.+|.|+++|.++++++.| .++++|++.+.
T Consensus 158 ~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmD--------hslk~W~l~~~ 213 (385)
T KOG1034|consen 158 HSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMD--------HSLKLWRLNVK 213 (385)
T ss_pred ceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCc--------ceEEEEecChh
Confidence 99999999999999887 4799999999999999999999999 99999999854
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-10 Score=123.58 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=90.1
Q ss_pred ccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000450 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1496)
Q Consensus 506 ~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~ 585 (1496)
..|...|.++.|-+... +=+.|+.+..+..|.++ |+..+.+....+.--+-.|..+.+-||
T Consensus 202 ash~qpvlsldyas~~~----rGisgga~dkl~~~Sl~-----------~s~gslq~~~e~~lknpGv~gvrIRpD---- 262 (323)
T KOG0322|consen 202 ASHKQPVLSLDYASSCD----RGISGGADDKLVMYSLN-----------HSTGSLQIRKEITLKNPGVSGVRIRPD---- 262 (323)
T ss_pred hhccCcceeeeechhhc----CCcCCCccccceeeeec-----------cccCcccccceEEecCCCccceEEccC----
Confidence 34566666666443332 55667777777776554 221111111122222345778888887
Q ss_pred ccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEEC
Q 000450 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1496)
Q Consensus 586 ~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl 656 (1496)
++.++|++.|+.||+|.-++.+++..++.|.+.|++++|+|+ ...++.+|.|..|.+|++
T Consensus 263 -----~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd------~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 263 -----GKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD------CELMAAASKDARISLWKL 322 (323)
T ss_pred -----CcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC------CchhhhccCCceEEeeec
Confidence 899999999999999999999999999999999999999998 789999999999999986
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.6e-09 Score=128.60 Aligned_cols=224 Identities=18% Similarity=0.215 Sum_probs=135.9
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccccccccccccCC
Q 000450 22 TSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLD 101 (1496)
Q Consensus 22 va~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g~~s~d 101 (1496)
-.||+|+++|+.. .+.+|.++...+ ...+..|++|+++++.+.+ + + ..++
T Consensus 22 avfSnD~k~l~~~-~~~~V~VyS~~T-----g~~i~~l~~~~a~l~s~~~---~---~------------------~~~~ 71 (792)
T KOG1963|consen 22 AVFSNDAKFLFLC-TGNFVKVYSTAT-----GECITSLEDHTAPLTSVIV---L---P------------------SSEN 71 (792)
T ss_pred cccccCCcEEEEe-eCCEEEEEecch-----HhhhhhcccccCccceeee---c---C------------------CCcc
Confidence 4699999998754 567899999986 3455589999999999973 0 0 1233
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcE--------------------EEEcC-----------------
Q 000450 102 NGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSV--------------------ICTLP----------------- 144 (1496)
Q Consensus 102 ~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~--------------------i~~~s----------------- 144 (1496)
..++.+.+.||+|++||..+|.+++.....-...+-.. ...++
T Consensus 72 ~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~ 151 (792)
T KOG1963|consen 72 ANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDS 151 (792)
T ss_pred ceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccc
Confidence 47899999999999999999998876432210000000 00000
Q ss_pred ------------------CCCe--EEEEcc----cccccC-------CcccccccccccccccccccCCCCCCCCccEEE
Q 000450 145 ------------------SNPR--YVCIGC----CFIDTN-------QLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLV 193 (1496)
Q Consensus 145 ------------------~~~~--ll~~G~----~~id~~-------~l~~~~~~~~v~~~~~~~d~~~~~~~~~~~~I~ 193 (1496)
+.+. +++--+ ++...+ ...+.|+|. +.-......+.........|+|.
T Consensus 152 ~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~-~t~~~~spn~~~~Aa~d~dGrI~ 230 (792)
T KOG1963|consen 152 AKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFN-ITCVALSPNERYLAAGDSDGRIL 230 (792)
T ss_pred cchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhccc-ceeEEeccccceEEEeccCCcEE
Confidence 0111 111000 111110 011124442 22223344444455566678899
Q ss_pred EEECCc---eEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCccccccCCCcccCCCccce
Q 000450 194 IVDTYG---LTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDM 270 (1496)
Q Consensus 194 v~D~~t---~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~~~~~~~l~~~ek~i~~ 270 (1496)
+|.-.. .....+.+ +|+.+.|.++.|++++ .+++.|+..|.+.+|.+.+++ + +.
T Consensus 231 vw~d~~~~~~~~t~t~l--HWH~~~V~~L~fS~~G-----~~LlSGG~E~VLv~Wq~~T~~----k----------qf-- 287 (792)
T KOG1963|consen 231 VWRDFGSSDDSETCTLL--HWHHDEVNSLSFSSDG-----AYLLSGGREGVLVLWQLETGK----K----------QF-- 287 (792)
T ss_pred EEeccccccccccceEE--EecccccceeEEecCC-----ceEeecccceEEEEEeecCCC----c----------cc--
Confidence 986554 22333444 3666779999999554 568999999999999998872 1 11
Q ss_pred eeeccCcccCceEEEEecCCcEEEEEeCCeEE
Q 000450 271 AILQNGVVEGGHLVSVATCGNIIALVLKDHCI 302 (1496)
Q Consensus 271 v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~ 302 (1496)
+.-..+.+..+.+|||+...+++..|.-+
T Consensus 288 ---LPRLgs~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 288 ---LPRLGSPILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred ---ccccCCeeEEEEEcCCCCeEEEEecCceE
Confidence 11122445678889999988888877643
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=133.66 Aligned_cols=217 Identities=18% Similarity=0.172 Sum_probs=152.5
Q ss_pred cccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEeccc-----ccC--C-----
Q 000450 482 FCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLF-----ERH--N----- 549 (1496)
Q Consensus 482 ~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l-----~~~--d----- 549 (1496)
...|.|-+||.....+...-...+..|.+.|+++.+.+.+ ++.+.+.+.||+|+...+... ... +
T Consensus 207 dK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n---~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs 283 (498)
T KOG4328|consen 207 DKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPAN---TSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFS 283 (498)
T ss_pred cCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCC---hhheeeeccCceeeeeeecchhhHHHhhcCccceeee
Confidence 3446677788743233233344567889999999833322 148899999999998765311 000 0
Q ss_pred ---------------CCC--CccccCCcce-EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC
Q 000450 550 ---------------SPG--ASLKVNSHVS-RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG 611 (1496)
Q Consensus 550 ---------------~~~--~~~d~~s~~~-~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg 611 (1496)
.-+ ..||..++.. ...+.-|...|+.++++|.+ ..+|+|+|.|++++|||++.-
T Consensus 284 ~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~--------p~~laT~s~D~T~kIWD~R~l 355 (498)
T KOG4328|consen 284 SLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVC--------PWFLATASLDQTAKIWDLRQL 355 (498)
T ss_pred eccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCC--------chheeecccCcceeeeehhhh
Confidence 001 2344443322 34456688899999999973 789999999999999999853
Q ss_pred c----eEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECC----CCcEEEEecCCCC------CcEEEEE
Q 000450 612 N----LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE----TLRVERMFPGHPN------YPAKVVW 677 (1496)
Q Consensus 612 ~----~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~----~~~~l~~~~gH~~------~V~~V~~ 677 (1496)
. ++.....|...|.+..|+|. +..+++.+.|..|+|||.. .-.++.++. |.. .+....|
T Consensus 356 ~~K~sp~lst~~HrrsV~sAyFSPs------~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W 428 (498)
T KOG4328|consen 356 RGKASPFLSTLPHRRSVNSAYFSPS------GGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAW 428 (498)
T ss_pred cCCCCcceecccccceeeeeEEcCC------CCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhhee
Confidence 2 23334579999999999999 5559999999999999983 333444443 322 2456789
Q ss_pred cCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCcee
Q 000450 678 DCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMF 724 (1496)
Q Consensus 678 spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~ 724 (1496)
.|+..++++|-.- ..|-|+|-..|+.+..+.+.....+.
T Consensus 429 ~P~~~li~vg~~~--------r~IDv~~~~~~q~v~el~~P~~~tI~ 467 (498)
T KOG4328|consen 429 DPDYNLIVVGRYP--------RPIDVFDGNGGQMVCELHDPESSTIP 467 (498)
T ss_pred CCCccEEEEeccC--------cceeEEcCCCCEEeeeccCccccccc
Confidence 9999999999887 78999999999989888877764443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.2e-10 Score=123.97 Aligned_cols=192 Identities=16% Similarity=0.164 Sum_probs=140.7
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEe--cCCccE---EEEEEecCCCCcccCcCCCEEEEEeCCC
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL--GHTGAV---LCLAAHRMVGTAKGWSFNEVLVSGSMDC 601 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~--gH~~~V---~~La~spd~~~~~~~~~~~~L~SGs~Dg 601 (1496)
.+++.+.+.-|.+ |+..+|+....+. .|...+ .||.|+|| |..|+.|- ..
T Consensus 125 l~a~ssr~~PIh~---------------wdaftG~lraSy~~ydh~de~taAhsL~Fs~D---------GeqlfaGy-kr 179 (406)
T KOG2919|consen 125 LFAVSSRDQPIHL---------------WDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD---------GEQLFAGY-KR 179 (406)
T ss_pred eeeeccccCceee---------------eeccccccccchhhhhhHHhhhhheeEEecCC---------CCeEeecc-cc
Confidence 5555566666766 4455666555553 355544 58999998 88888774 57
Q ss_pred cEEEEEC-CCCceEEE---E----cccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcE
Q 000450 602 SIRIWDL-GSGNLITV---M----HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPA 673 (1496)
Q Consensus 602 tV~lWDl-~tg~~l~~---~----~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~ 673 (1496)
+|+++|+ +.|.-... + .+..+-|.+++|+|.. ..+++.++--.++-|+.-..++++..+.||.+.|+
T Consensus 180 cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~-----~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvT 254 (406)
T KOG2919|consen 180 CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMD-----SKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVT 254 (406)
T ss_pred eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCC-----CcceeeecccceeeeEecCCCCceeeecccCCCee
Confidence 8999999 56642211 1 1336778999999984 56999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC-CeEEEEEeCCCC-CceeeeeecccccccccceEEcCCccccccc
Q 000450 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTAS-HSMFDHFCKGISMNSISGSVLNGNTSVSSLL 751 (1496)
Q Consensus 674 ~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t-g~~~~~l~gh~a-~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l 751 (1496)
.+.|.++|+.|.+|.+- +..|-.||++. +..+..+.+|.. ....+.|. .... |...+++..
T Consensus 255 hL~~~edGn~lfsGaRk-------~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FD----ld~~------~~~LasG~t 317 (406)
T KOG2919|consen 255 HLQWCEDGNKLFSGARK-------DDKILCWDIRYSRDPVYALERHVGDTNQRILFD----LDPK------GEILASGDT 317 (406)
T ss_pred eEEeccCcCeecccccC-------CCeEEEEeehhccchhhhhhhhccCccceEEEe----cCCC------CceeeccCC
Confidence 99999999999999875 36899999976 566778888876 33344444 1122 333333333
Q ss_pred eeeccCCcEEeeccccccc
Q 000450 752 LPIHEDGTFRQSQIQNDER 770 (1496)
Q Consensus 752 ~~~~~D~~ir~W~l~~~e~ 770 (1496)
||.++.|+++.+..
T Consensus 318 -----dG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 318 -----DGSVRVWDLKDLGN 331 (406)
T ss_pred -----CccEEEEecCCCCC
Confidence 89999999987544
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.9e-11 Score=140.93 Aligned_cols=149 Identities=17% Similarity=0.277 Sum_probs=123.1
Q ss_pred EEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCC
Q 000450 531 GFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS 610 (1496)
Q Consensus 531 Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~t 610 (1496)
.+..|.|.|+... .++++.|.. +..+. ....|+.+.|.|- +.+.|+.++.|+.|++|.+..
T Consensus 599 ~g~gG~iai~el~------~PGrLPDgv----~p~l~-Ngt~vtDl~WdPF--------D~~rLAVa~ddg~i~lWr~~a 659 (1012)
T KOG1445|consen 599 AGSGGVIAIYELN------EPGRLPDGV----MPGLF-NGTLVTDLHWDPF--------DDERLAVATDDGQINLWRLTA 659 (1012)
T ss_pred cCCCceEEEEEcC------CCCCCCccc----ccccc-cCceeeecccCCC--------ChHHeeecccCceEEEEEecc
Confidence 4557888885544 255544431 11121 2346999999996 478999999999999999986
Q ss_pred Cc-------eEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCE
Q 000450 611 GN-------LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGY 683 (1496)
Q Consensus 611 g~-------~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~ 683 (1496)
+. +...++.|...|+++.|+|-. .+.+++++.|.+|+|||+++++....+.||.+.|..++|||||+.
T Consensus 660 ~gl~e~~~tPe~~lt~h~eKI~slRfHPLA-----advLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~ 734 (1012)
T KOG1445|consen 660 NGLPENEMTPEKILTIHGEKITSLRFHPLA-----ADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRR 734 (1012)
T ss_pred CCCCcccCCcceeeecccceEEEEEecchh-----hhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcc
Confidence 53 457788999999999999974 679999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 684 IACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 684 L~tgs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
+++.|.| |+|+||+.++++.
T Consensus 735 ~AtVcKD--------g~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 735 IATVCKD--------GTLRVYEPRSREQ 754 (1012)
T ss_pred eeeeecC--------ceEEEeCCCCCCC
Confidence 9999999 9999999988753
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=132.25 Aligned_cols=155 Identities=21% Similarity=0.208 Sum_probs=128.7
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
++++|+.|..|++|....-..+ .+ ..+-+....|..|+..|+++.|+|+ +++|+||+.++.|.+|
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~--~~----~~~V~y~s~Ls~H~~aVN~vRf~p~---------gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPG--GG----DMKVEYLSSLSRHTRAVNVVRFSPD---------GELLASGGDGGEVFLW 92 (434)
T ss_pred ceecccCccceeeeeeeecCCC--CC----ceeEEEeecccCCcceeEEEEEcCC---------cCeeeecCCCceEEEE
Confidence 7899999999999654421110 00 0122455668899999999999997 8999999999999999
Q ss_pred ECC--------C--------CceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC
Q 000450 607 DLG--------S--------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1496)
Q Consensus 607 Dl~--------t--------g~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~ 670 (1496)
-.. + .....++.+|...|..++|+|+ +..+++++.|.++++||+..|+.+..+..|..
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d------~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~ 166 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD------SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH 166 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC------CceeeeeeccceEEEEEeccceeEeecccccc
Confidence 866 2 2245678889999999999999 89999999999999999999999999999999
Q ss_pred CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 671 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 671 ~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
.|..++|.|..+|+++-+.| ...+++++...+
T Consensus 167 yvqgvawDpl~qyv~s~s~d--------r~~~~~~~~~~~ 198 (434)
T KOG1009|consen 167 YVQGVAWDPLNQYVASKSSD--------RHPEGFSAKLKQ 198 (434)
T ss_pred ccceeecchhhhhhhhhccC--------cccceeeeeeee
Confidence 99999999999999999888 667777765433
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.2e-09 Score=129.37 Aligned_cols=167 Identities=19% Similarity=0.269 Sum_probs=111.8
Q ss_pred CCCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCccccccccccccc
Q 000450 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1496)
Q Consensus 14 ~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~ 93 (1496)
-++..++|+++||.++++|+|..||+|.+|.=-.. ..+.....++.=|..+|++|+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-~~~~~t~t~lHWH~~~V~~L~----------------------- 258 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-SDDSETCTLLHWHHDEVNSLS----------------------- 258 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEecccc-ccccccceEEEecccccceeE-----------------------
Confidence 34445799999999999999999999999985410 011222345566999999999
Q ss_pred ccccccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCcccccccccccc
Q 000450 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEG 173 (1496)
Q Consensus 94 ~~g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~ 173 (1496)
|++||.||.||+..|.+.+|.+.+++ . ++-|+.|+|..-...++|+.+.|.-+.
T Consensus 259 ----fS~~G~~LlSGG~E~VLv~Wq~~T~~-k---qfLPRLgs~I~~i~vS~ds~~~sl~~~------------------ 312 (792)
T KOG1963|consen 259 ----FSSDGAYLLSGGREGVLVLWQLETGK-K---QFLPRLGSPILHIVVSPDSDLYSLVLE------------------ 312 (792)
T ss_pred ----EecCCceEeecccceEEEEEeecCCC-c---ccccccCCeeEEEEEcCCCCeEEEEec------------------
Confidence 78999999999999999999999997 2 233455777766677788876654432
Q ss_pred cccccccCCCCCCCCccEEEEEECCceEEEEEEecCcc--------ccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEE
Q 000450 174 DLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNL--------SIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLV 245 (1496)
Q Consensus 174 ~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~--------s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lW 245 (1496)
+..|.+....++++..++.+-.. .-+-...+.+.| +-+.++.=+..|.|++|
T Consensus 313 ---------------DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-----r~~~~vln~~~g~vQ~y 372 (792)
T KOG1963|consen 313 ---------------DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-----RTNSLVLNGHPGHVQFY 372 (792)
T ss_pred ---------------CceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-----CCCceeecCCCceEEEE
Confidence 14555555555554444432000 001123344432 11234555788999999
Q ss_pred ECCCC
Q 000450 246 PISKE 250 (1496)
Q Consensus 246 dl~~~ 250 (1496)
|+.+.
T Consensus 373 dl~td 377 (792)
T KOG1963|consen 373 DLYTD 377 (792)
T ss_pred ecccc
Confidence 99876
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-09 Score=120.25 Aligned_cols=208 Identities=15% Similarity=0.209 Sum_probs=147.5
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~ 555 (1496)
++.++.+.-|++||....+.+ .......|-..+++.. ...|+|+ .|++| .+..|+| +++-. +++-.
T Consensus 126 ~a~ssr~~PIh~wdaftG~lr--aSy~~ydh~de~taAh---sL~Fs~DGeqlfaG-ykrcirv--Fdt~R----pGr~c 193 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLR--ASYRAYDHQDEYTAAH---SLQFSPDGEQLFAG-YKRCIRV--FDTSR----PGRDC 193 (406)
T ss_pred eeeccccCceeeeeccccccc--cchhhhhhHHhhhhhe---eEEecCCCCeEeec-ccceEEE--eeccC----CCCCC
Confidence 567778889999998876542 2222344555555421 1126666 66665 4778999 44211 22211
Q ss_pred ccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCC
Q 000450 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE 635 (1496)
Q Consensus 556 d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~ 635 (1496)
+..+-. .+--.|..+.+.|++|+|. +...++.|+.-.++-|+.-..+.++..+.+|.+.|+.+.|.++
T Consensus 194 ~vy~t~-~~~k~gq~giisc~a~sP~--------~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed--- 261 (406)
T KOG2919|consen 194 PVYTTV-TKGKFGQKGIISCFAFSPM--------DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED--- 261 (406)
T ss_pred cchhhh-hcccccccceeeeeeccCC--------CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC---
Confidence 111000 0001345778999999997 3678999999999999998889999999999999999999999
Q ss_pred CCCCCEEEEEeC-CCcEEEEECCCC-cEEEEecCCCC-CcEEEEE--cCCCCEEEEEEcCCCCCCCCCCEEEEEECCC-C
Q 000450 636 HPWSDCFLSVGE-DFSVALASLETL-RVERMFPGHPN-YPAKVVW--DCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-G 709 (1496)
Q Consensus 636 ~~~g~~l~Sgs~-DgsV~lWdl~~~-~~l~~~~gH~~-~V~~V~~--spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t-g 709 (1496)
|+.|.+|+. |-.|..||++.. .++..+.+|.. .-..|-| .|++++|++|+.| |.|++||+++ |
T Consensus 262 ---Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~td--------G~V~vwdlk~~g 330 (406)
T KOG2919|consen 262 ---GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTD--------GSVRVWDLKDLG 330 (406)
T ss_pred ---cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCC--------ccEEEEecCCCC
Confidence 888888875 778999999864 45677777766 3345555 6889999999888 9999999998 7
Q ss_pred eEEEEEeCCCC
Q 000450 710 ARERVLRGTAS 720 (1496)
Q Consensus 710 ~~~~~l~gh~a 720 (1496)
..+.++..|..
T Consensus 331 n~~sv~~~~sd 341 (406)
T KOG2919|consen 331 NEVSVTGNYSD 341 (406)
T ss_pred Ccccccccccc
Confidence 76666666654
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.4e-10 Score=124.54 Aligned_cols=192 Identities=15% Similarity=0.126 Sum_probs=137.4
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.++++.++|+|++++|. ++.....+++|...++.+.|..+. ....+.||+.||+|++|
T Consensus 42 ~vav~lSngsv~lyd~~---------------tg~~l~~fk~~~~~~N~vrf~~~d-------s~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKG---------------TGQLLEEFKGPPATTNGVRFISCD-------SPHGVISCSSDGTVRLW 99 (376)
T ss_pred eEEEEecCCeEEEEecc---------------chhhhheecCCCCcccceEEecCC-------CCCeeEEeccCCeEEEE
Confidence 68999999999996554 466788899999999999996541 26789999999999999
Q ss_pred ECCCCceE--EEEcccC-CCEEEEEECCCCCCCCCCCEEEEEe----CCCcEEEEECCCCcE-EEE-ecCCCCCcEEEEE
Q 000450 607 DLGSGNLI--TVMHHHV-APVRQIILSPPQTEHPWSDCFLSVG----EDFSVALASLETLRV-ERM-FPGHPNYPAKVVW 677 (1496)
Q Consensus 607 Dl~tg~~l--~~~~~H~-~~V~~l~~sPd~~~~~~g~~l~Sgs----~DgsV~lWdl~~~~~-l~~-~~gH~~~V~~V~~ 677 (1496)
|+++.... ..+..|. .+..+++.+-. ++++++|. .|-.|.+||++..+. ++. +..|...|++++|
T Consensus 100 D~Rs~~e~a~~~~~~~~~~~f~~ld~nck------~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrF 173 (376)
T KOG1188|consen 100 DIRSQAESARISWTQQSGTPFICLDLNCK------KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRF 173 (376)
T ss_pred EeecchhhhheeccCCCCCcceEeeccCc------CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEe
Confidence 99986644 4455555 46677777655 67888875 478999999998766 443 4679999999999
Q ss_pred cCCC-CEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccc--cceee
Q 000450 678 DCPR-GYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSS--LLLPI 754 (1496)
Q Consensus 678 spdg-~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~--~l~~~ 754 (1496)
+|.. +.|++|+.| |-|.|+|++.-..+- -+.+.++..+ +|..-.+.... .++.+
T Consensus 174 HP~~pnlLlSGSvD--------GLvnlfD~~~d~EeD---------aL~~viN~~s------SI~~igw~~~~ykrI~cl 230 (376)
T KOG1188|consen 174 HPSDPNLLLSGSVD--------GLVNLFDTKKDNEED---------ALLHVINHGS------SIHLIGWLSKKYKRIMCL 230 (376)
T ss_pred cCCCCCeEEeeccc--------ceEEeeecCCCcchh---------hHHHhhcccc------eeeeeeeecCCcceEEEE
Confidence 9955 588888888 999999997542211 1111121100 01111122222 46777
Q ss_pred ccCCcEEeecccccc
Q 000450 755 HEDGTFRQSQIQNDE 769 (1496)
Q Consensus 755 ~~D~~ir~W~l~~~e 769 (1496)
..++++.+|+++...
T Consensus 231 TH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 231 THMETFAIYELEDGS 245 (376)
T ss_pred EccCceeEEEccCCC
Confidence 888999999986654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=8e-09 Score=122.51 Aligned_cols=196 Identities=23% Similarity=0.303 Sum_probs=153.3
Q ss_pred cCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEc-CCcEEEEEecccccCCCCCCccccCCcce
Q 000450 484 QDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFF-SGEIEVIQFDLFERHNSPGASLKVNSHVS 562 (1496)
Q Consensus 484 ~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~-dG~I~V~~~~~l~~~d~~~~~~d~~s~~~ 562 (1496)
++.+.+|+... .......+..|...|..+.+.+... .++.+.. |+.+.+ |+ ...+..
T Consensus 133 d~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~--~~-------------~~~~~~ 190 (466)
T COG2319 133 DGTVKLWDLST---PGKLIRTLEGHSESVTSLAFSPDGK----LLASGSSLDGTIKL--WD-------------LRTGKP 190 (466)
T ss_pred CccEEEEEecC---CCeEEEEEecCcccEEEEEECCCCC----EEEecCCCCCceEE--EE-------------cCCCce
Confidence 55778888765 1234455688889999888555443 5777765 999998 43 333567
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCC-EEEEEeCCCcEEEEECCCCceEE-EEcccCCCEEEEEECCCCCCCCCCC
Q 000450 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLGSGNLIT-VMHHHVAPVRQIILSPPQTEHPWSD 640 (1496)
Q Consensus 563 ~~~l~gH~~~V~~La~spd~~~~~~~~~~~-~L~SGs~DgtV~lWDl~tg~~l~-~~~~H~~~V~~l~~sPd~~~~~~g~ 640 (1496)
...+.+|...|.+++|+|+ +. .+++++.|++|++||...+..+. .+..|...+ -..|+|+ +.
T Consensus 191 ~~~~~~~~~~v~~~~~~~~---------~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~------~~ 254 (466)
T COG2319 191 LSTLAGHTDPVSSLAFSPD---------GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPD------GS 254 (466)
T ss_pred EEeeccCCCceEEEEEcCC---------cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCC------CC
Confidence 7888889999999999986 55 66666999999999999888888 788998875 4489998 67
Q ss_pred EEEEEeCCCcEEEEECCCCcE-EEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe--C
Q 000450 641 CFLSVGEDFSVALASLETLRV-ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR--G 717 (1496)
Q Consensus 641 ~l~Sgs~DgsV~lWdl~~~~~-l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~--g 717 (1496)
.+++++.|+.+++|+++.... +..+.+|...+.++.|.|++..+++++.| +.+++||..++....... +
T Consensus 255 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d--------~~~~~~~~~~~~~~~~~~~~~ 326 (466)
T COG2319 255 LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD--------GTVRLWDLETGKLLSSLTLKG 326 (466)
T ss_pred EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCC--------CcEEEEEcCCCceEEEeeecc
Confidence 888999999999999987664 55557888999999999999999887777 789999999988777766 7
Q ss_pred CCCCceee
Q 000450 718 TASHSMFD 725 (1496)
Q Consensus 718 h~a~vi~~ 725 (1496)
|...+...
T Consensus 327 ~~~~~~~~ 334 (466)
T COG2319 327 HEGPVSSL 334 (466)
T ss_pred cCCceEEE
Confidence 77633333
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.7e-09 Score=117.45 Aligned_cols=187 Identities=17% Similarity=0.185 Sum_probs=131.4
Q ss_pred ecccccCccccccccCCCCCCCcccc--cccCCccEEEEEeeccccccCC---EEEEEEcCCcEEEEEecccccCCCCCC
Q 000450 479 DLTFCQDTVPRSEHVDSRQAGDGRDD--FVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGA 553 (1496)
Q Consensus 479 ~~s~~~~~i~lWd~~~~~~~~~~~~~--~~~h~~~Vts~~~~s~~~f~P~---~lv~Gs~dG~I~V~~~~~l~~~d~~~~ 553 (1496)
.++..+..+.+|+............. -.+|....++- .|+|. .-+....|+++.. ||
T Consensus 138 lasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg------~WspHHdgnqv~tt~d~tl~~--~D---------- 199 (370)
T KOG1007|consen 138 LASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSG------AWSPHHDGNQVATTSDSTLQF--WD---------- 199 (370)
T ss_pred eEEeccCceEEEEcccCcchheeecccccccccceeccc------ccCCCCccceEEEeCCCcEEE--EE----------
Confidence 34455788899998776542111100 11223333332 36663 3344456888887 33
Q ss_pred ccccCCcceEEEE-ecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCC-CceEEEEcccCCCEEEEEECC
Q 000450 554 SLKVNSHVSRQYF-LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-GNLITVMHHHVAPVRQIILSP 631 (1496)
Q Consensus 554 ~~d~~s~~~~~~l-~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~t-g~~l~~~~~H~~~V~~l~~sP 631 (1496)
..+......+ ..|...|..+.|+|+. ..+|+||+.||.|++||.+. ..++..+.+|...|++|.|+|
T Consensus 200 ---~RT~~~~~sI~dAHgq~vrdlDfNpnk--------q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 200 ---LRTMKKNNSIEDAHGQRVRDLDFNPNK--------QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNP 268 (370)
T ss_pred ---ccchhhhcchhhhhcceeeeccCCCCc--------eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecC
Confidence 2232333333 4688899999999972 67999999999999999985 457899999999999999999
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEECCCC-----------------------------cEEEEecCCCCCcEEEEEcCCCC
Q 000450 632 PQTEHPWSDCFLSVGEDFSVALASLETL-----------------------------RVERMFPGHPNYPAKVVWDCPRG 682 (1496)
Q Consensus 632 d~~~~~~g~~l~Sgs~DgsV~lWdl~~~-----------------------------~~l~~~~gH~~~V~~V~~spdg~ 682 (1496)
.. .++++|||.|..|.+|....- ..+.++..|...|++++|+.-+.
T Consensus 269 ~h-----dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 269 EH-----DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred cc-----ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 85 789999999999999965310 13446778999999999998777
Q ss_pred EE-EEEEcCCCCCCCCCCEEEEEECC
Q 000450 683 YI-ACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 683 ~L-~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
++ ++.+.| |.+.|=.+.
T Consensus 344 WiFASLSYD--------GRviIs~V~ 361 (370)
T KOG1007|consen 344 WIFASLSYD--------GRVIISSVP 361 (370)
T ss_pred eeEEEeccC--------ceEEeecCC
Confidence 65 555666 888886654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-08 Score=120.91 Aligned_cols=202 Identities=20% Similarity=0.292 Sum_probs=146.7
Q ss_pred ccCccccccccCCCCCCCcccccccCC-ccEEEEEeeccccccCCEEEE-EEcCCcEEEEEecccccCCCCCCccccCC-
Q 000450 483 CQDTVPRSEHVDSRQAGDGRDDFVHKE-KIVSSSMVISESFYAPYAIVY-GFFSGEIEVIQFDLFERHNSPGASLKVNS- 559 (1496)
Q Consensus 483 ~~~~i~lWd~~~~~~~~~~~~~~~~h~-~~Vts~~~~s~~~f~P~~lv~-Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s- 559 (1496)
.++.+.+|+..... .....+..+. ..+....+. ..... ..++. +..|+.+.+|... .
T Consensus 85 ~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~d~~~~~~~~~---------------~~ 144 (466)
T COG2319 85 SDGTIKLWDLDNGE---KLIKSLEGLHDSSVSKLALS-SPDGN-SILLASSSLDGTVKLWDLS---------------TP 144 (466)
T ss_pred CCCcEEEEEcCCCc---eeEEEEeccCCCceeeEEEE-CCCcc-eEEeccCCCCccEEEEEec---------------CC
Confidence 45677778876653 1222233322 244444432 11111 12333 3447888874333 2
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeC-CCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCC
Q 000450 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1496)
Q Consensus 560 ~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~-DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~ 638 (1496)
......+.+|...|.++.|+|+ +..+++++. |+.+++|++..+..+..+.+|...|.++.|+|+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------ 209 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPD---------GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPD------ 209 (466)
T ss_pred CeEEEEEecCcccEEEEEECCC---------CCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCC------
Confidence 4567788999999999999997 668888885 999999999999999999999999999999988
Q ss_pred CC-EEEEEeCCCcEEEEECCCCcEEE-EecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE-EEEE
Q 000450 639 SD-CFLSVGEDFSVALASLETLRVER-MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR-ERVL 715 (1496)
Q Consensus 639 g~-~l~Sgs~DgsV~lWdl~~~~~l~-~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~-~~~l 715 (1496)
+. .+++++.|++|++||...+..+. .+.+|...+ ...|+|++.++++++.| +.+++||++.... ...+
T Consensus 210 ~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d--------~~~~~~~~~~~~~~~~~~ 280 (466)
T COG2319 210 GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSD--------GTIRLWDLRSSSSLLRTL 280 (466)
T ss_pred cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCC--------CcEEEeeecCCCcEEEEE
Confidence 65 66666999999999999888888 688998876 44899999888888888 9999999987664 5555
Q ss_pred eCCCCCceeeeee
Q 000450 716 RGTASHSMFDHFC 728 (1496)
Q Consensus 716 ~gh~a~vi~~~~~ 728 (1496)
.+|...+....+.
T Consensus 281 ~~~~~~v~~~~~~ 293 (466)
T COG2319 281 SGHSSSVLSVAFS 293 (466)
T ss_pred ecCCccEEEEEEC
Confidence 6776555544343
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.5e-11 Score=146.40 Aligned_cols=191 Identities=19% Similarity=0.247 Sum_probs=144.4
Q ss_pred cccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEec
Q 000450 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1496)
Q Consensus 501 ~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~sp 580 (1496)
.+..+.+|...|.|..+-..+. ++++|+.|.-++||. .++..+.....||.+.++.++.+.
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~----~Iitgsdd~lvKiwS---------------~et~~~lAs~rGhs~ditdlavs~ 242 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGR----YIITGSDDRLVKIWS---------------METARCLASCRGHSGDITDLAVSS 242 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccc----eEeecCccceeeeee---------------ccchhhhccCCCCccccchhccch
Confidence 3445789999999988666665 899999999999933 446678888999999999999987
Q ss_pred CCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC--
Q 000450 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-- 658 (1496)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~-- 658 (1496)
. +.+++++|.|+.|++|-+..+.++..+.+|++.|++++|+|- .+.+.||++++||.+-
T Consensus 243 ~---------n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~----------~sss~dgt~~~wd~r~~~ 303 (1113)
T KOG0644|consen 243 N---------NTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR----------ASSSDDGTCRIWDARLEP 303 (1113)
T ss_pred h---------hhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc----------ccCCCCCceEeccccccc
Confidence 5 688999999999999999999999999999999999999997 2778899999999871
Q ss_pred ------------CcEEEE--ec--------CC------CCCcEEEEEcCCCCEEEEEEcCCC---CCCCCCCEEEEEECC
Q 000450 659 ------------LRVERM--FP--------GH------PNYPAKVVWDCPRGYIACLCRDHS---RTSDAVDVLFIWDVK 707 (1496)
Q Consensus 659 ------------~~~l~~--~~--------gH------~~~V~~V~~spdg~~L~tgs~D~s---g~~D~dg~V~VWDl~ 707 (1496)
+..+.. +. +. .....+++|...+-.+++...|++ ...-.+..+.+|++.
T Consensus 304 ~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~ 383 (1113)
T KOG0644|consen 304 RIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY 383 (1113)
T ss_pred cccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecc
Confidence 000000 00 00 012234455555545555554422 111122678999999
Q ss_pred CCeEEEEEeCCCCCceeeeeec
Q 000450 708 TGARERVLRGTASHSMFDHFCK 729 (1496)
Q Consensus 708 tg~~~~~l~gh~a~vi~~~~~~ 729 (1496)
+|.+++.+.||...+....+.+
T Consensus 384 ~g~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 384 TGQLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred cchhhhhhcccccceeeeeecC
Confidence 9999999999999888877664
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.6e-10 Score=126.37 Aligned_cols=136 Identities=19% Similarity=0.306 Sum_probs=117.1
Q ss_pred CccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc---------eEEEEcccCCCEEEEEECCCCCCCCCCC
Q 000450 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---------LITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1496)
Q Consensus 570 ~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~---------~l~~~~~H~~~V~~l~~sPd~~~~~~g~ 640 (1496)
..+|..+.|+++ +...++||+.|..|++|-+..+. .+..+..|...|+.+.|+|+ |.
T Consensus 13 ~~pv~s~dfq~n--------~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~------ge 78 (434)
T KOG1009|consen 13 HEPVYSVDFQKN--------SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD------GE 78 (434)
T ss_pred CCceEEEEeccC--------cccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC------cC
Confidence 357899999886 24599999999999999987532 34678889999999999999 99
Q ss_pred EEEEEeCCCcEEEEECC--------C--------CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEE
Q 000450 641 CFLSVGEDFSVALASLE--------T--------LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1496)
Q Consensus 641 ~l~Sgs~DgsV~lWdl~--------~--------~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VW 704 (1496)
.++||+.++.|.+|-.. + ....+.+.+|...|..++|+||+.++++++.| .++++|
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~d--------ns~~l~ 150 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVD--------NSVRLW 150 (434)
T ss_pred eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeecc--------ceEEEE
Confidence 99999999999999765 2 33556778999999999999999999999999 999999
Q ss_pred ECCCCeEEEEEeCCCCCceeeee
Q 000450 705 DVKTGARERVLRGTASHSMFDHF 727 (1496)
Q Consensus 705 Dl~tg~~~~~l~gh~a~vi~~~~ 727 (1496)
|+..|+++..+.+|..-+....+
T Consensus 151 Dv~~G~l~~~~~dh~~yvqgvaw 173 (434)
T KOG1009|consen 151 DVHAGQLLAILDDHEHYVQGVAW 173 (434)
T ss_pred EeccceeEeeccccccccceeec
Confidence 99999999999999976666533
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-09 Score=121.67 Aligned_cols=200 Identities=17% Similarity=0.273 Sum_probs=150.7
Q ss_pred eeecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 477 ~l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
.++++.+++.++++|... ++....|.+++..++-+.++++. +|..+.+++.||+|++|....
T Consensus 42 ~vav~lSngsv~lyd~~t----g~~l~~fk~~~~~~N~vrf~~~d--s~h~v~s~ssDG~Vr~wD~Rs------------ 103 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGT----GQLLEEFKGPPATTNGVRFISCD--SPHGVISCSSDGTVRLWDIRS------------ 103 (376)
T ss_pred eEEEEecCCeEEEEeccc----hhhhheecCCCCcccceEEecCC--CCCeeEEeccCCeEEEEEeec------------
Confidence 366777888999999776 56778899999999999998876 578999999999999944331
Q ss_pred cCCcceEEEEecCC-ccEEEEEEecCCCCcccCcCCCEEEEEe----CCCcEEEEECCCCce-EEE-EcccCCCEEEEEE
Q 000450 557 VNSHVSRQYFLGHT-GAVLCLAAHRMVGTAKGWSFNEVLVSGS----MDCSIRIWDLGSGNL-ITV-MHHHVAPVRQIIL 629 (1496)
Q Consensus 557 ~~s~~~~~~l~gH~-~~V~~La~spd~~~~~~~~~~~~L~SGs----~DgtV~lWDl~tg~~-l~~-~~~H~~~V~~l~~ 629 (1496)
.....+..+.+|. .+-.|++.... ++.++.|. .|-.|.+||++..+. +.. +..|...|++|.|
T Consensus 104 -~~e~a~~~~~~~~~~~f~~ld~nck---------~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrF 173 (376)
T KOG1188|consen 104 -QAESARISWTQQSGTPFICLDLNCK---------KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRF 173 (376)
T ss_pred -chhhhheeccCCCCCcceEeeccCc---------CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEe
Confidence 1123344455555 35667766543 67777775 566899999998765 443 4579999999999
Q ss_pred CCCCCCCCCCCEEEEEeCCCcEEEEECCCCc---EEEEecCCCCCcEEEEEcCCC-CEEEEEEcCCCCCCCCCCEEEEEE
Q 000450 630 SPPQTEHPWSDCFLSVGEDFSVALASLETLR---VERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 630 sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~---~l~~~~gH~~~V~~V~~spdg-~~L~tgs~D~sg~~D~dg~V~VWD 705 (1496)
+|.. .+.++|||.||-|.|+|++.-. .+...-.|...|.++.|..++ +.|.+.+.. ++.++|+
T Consensus 174 HP~~-----pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~--------Etf~~~e 240 (376)
T KOG1188|consen 174 HPSD-----PNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHM--------ETFAIYE 240 (376)
T ss_pred cCCC-----CCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEcc--------CceeEEE
Confidence 9985 7899999999999999997532 222223477789999998776 457888877 8999999
Q ss_pred CCCCeEEEEEeC
Q 000450 706 VKTGARERVLRG 717 (1496)
Q Consensus 706 l~tg~~~~~l~g 717 (1496)
++.+..+..+..
T Consensus 241 le~~~~~~~~~~ 252 (376)
T KOG1188|consen 241 LEDGSEETWLEN 252 (376)
T ss_pred ccCCChhhcccC
Confidence 999886655543
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-09 Score=118.33 Aligned_cols=164 Identities=14% Similarity=0.132 Sum_probs=118.4
Q ss_pred CCccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000450 508 KEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1496)
Q Consensus 508 h~~~Vts~~~~s~~~f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~ 585 (1496)
+-+.|.|+. |.|+ .+++-. |..|.+|..+ .+. ...-.+. ...-.+|+...++=+|+|.|
T Consensus 122 avg~i~cve------w~Pns~klasm~-dn~i~l~~l~--ess---~~vaev~----ss~s~e~~~~ftsg~WspHH--- 182 (370)
T KOG1007|consen 122 AVGKINCVE------WEPNSDKLASMD-DNNIVLWSLD--ESS---KIVAEVL----SSESAEMRHSFTSGAWSPHH--- 182 (370)
T ss_pred HhCceeeEE------EcCCCCeeEEec-cCceEEEEcc--cCc---chheeec----ccccccccceecccccCCCC---
Confidence 445888988 5555 566544 7788884443 110 0000010 00112366677888999964
Q ss_pred ccCcCCCEEEEEeCCCcEEEEECCCCceEEEE-cccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC-CcEEE
Q 000450 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM-HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-LRVER 663 (1496)
Q Consensus 586 ~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~-~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~-~~~l~ 663 (1496)
+++.+++. .|+++..||+++.++...+ ..|...|+.+.|+|+. ..+|++++.|+.|++||.+. ..++.
T Consensus 183 ----dgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnk-----q~~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 183 ----DGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNK-----QHILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ----ccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCc-----eEEEEEcCCCccEEEEeccCCCcccc
Confidence 36666665 5899999999988766554 4688899999999984 67899999999999999975 45789
Q ss_pred EecCCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 664 MFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 664 ~~~gH~~~V~~V~~spdg~-~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
.+++|...|++|.|+|.-. ++++|+.| ..|.+|.+.+
T Consensus 253 el~~HsHWvW~VRfn~~hdqLiLs~~SD--------s~V~Lsca~s 290 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHDQLILSGGSD--------SAVNLSCASS 290 (370)
T ss_pred ccCCCceEEEEEEecCccceEEEecCCC--------ceeEEEeccc
Confidence 9999999999999999654 56666666 8999998754
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.4e-09 Score=115.96 Aligned_cols=213 Identities=19% Similarity=0.190 Sum_probs=152.6
Q ss_pred ccCCccEEEEEeecccc-ccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEE-----ecCCccEEEEEEe
Q 000450 506 VHKEKIVSSSMVISESF-YAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-----LGHTGAVLCLAAH 579 (1496)
Q Consensus 506 ~~h~~~Vts~~~~s~~~-f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l-----~gH~~~V~~La~s 579 (1496)
..|.-.++.++++++.. ..|+.|++ .+..+++|+...-.. .. .+...+ ..|..+++++.|+
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLAT--s~D~LRlWri~~ee~---~~--------~~~~~L~~~kns~~~aPlTSFDWn 159 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLAT--SSDFLRLWRIGDEES---RV--------ELQSVLNNNKNSEFCAPLTSFDWN 159 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhc--ccCeEEEEeccCcCC---ce--------ehhhhhccCcccccCCcccccccc
Confidence 35777888999877663 45666665 355788855431000 00 111111 2456789999998
Q ss_pred cCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc---eEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEEC
Q 000450 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1496)
Q Consensus 580 pd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~---~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl 656 (1496)
.- +.+++.+.|-|-|..|||+++|. ....+-.|..+|..++|...+ -+.|+|+|.||+||++|+
T Consensus 160 e~--------dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s-----~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 160 EV--------DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS-----RDVFASVGADGSVRMFDL 226 (364)
T ss_pred cC--------CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc-----cceEEEecCCCcEEEEEe
Confidence 75 37899999999999999999873 356788999999999999863 569999999999999999
Q ss_pred CCCcEE---EEecCCCCCcEEEEEcCCC-CEEEEEEcCCCCCCCCCCEEEEEECCC-CeEEEEEeCCCCCceeeeeeccc
Q 000450 657 ETLRVE---RMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGI 731 (1496)
Q Consensus 657 ~~~~~l---~~~~gH~~~V~~V~~spdg-~~L~tgs~D~sg~~D~dg~V~VWDl~t-g~~~~~l~gh~a~vi~~~~~~~~ 731 (1496)
+..+.- ..-+....+...++|++.+ +||++-..| + ..|.|-|++. +..+..+++|++.+-.+.+.+.
T Consensus 227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~d------S-~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPh- 298 (364)
T KOG0290|consen 227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD------S-NKVVILDIRVPCTPVARLRNHQASVNGIAWAPH- 298 (364)
T ss_pred cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcC------C-ceEEEEEecCCCcceehhhcCcccccceEecCC-
Confidence 875432 2222224578899998754 588877766 1 6799999987 5678999999998877766532
Q ss_pred ccccccceEEcCCccccccceeeccCCcEEeecccc
Q 000450 732 SMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1496)
Q Consensus 732 ~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~ 767 (1496)
.+.++.+...|....+|+++.
T Consensus 299 ---------------S~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 299 ---------------SSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ---------------CCceeeecCCcceEEEEeccc
Confidence 223444555688899999843
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.9e-08 Score=123.12 Aligned_cols=191 Identities=16% Similarity=0.121 Sum_probs=128.7
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
+..+.....|++||........ ....+-...||++. ....+.+.++.|+.||.+++ ||.... ..
T Consensus 1180 Ll~tGd~r~IRIWDa~~E~~~~---diP~~s~t~vTaLS---~~~~~gn~i~AGfaDGsvRv--yD~R~a--------~~ 1243 (1387)
T KOG1517|consen 1180 LLVTGDVRSIRIWDAHKEQVVA---DIPYGSSTLVTALS---ADLVHGNIIAAGFADGSVRV--YDRRMA--------PP 1243 (1387)
T ss_pred EEecCCeeEEEEEecccceeEe---ecccCCCccceeec---ccccCCceEEEeecCCceEE--eecccC--------Cc
Confidence 4444455678888876543211 11233334455533 22123358999999999999 442111 11
Q ss_pred CCcceEEEEecCCcc--EEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceE--EEEcccC--C-CEEEEEEC
Q 000450 558 NSHVSRQYFLGHTGA--VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLI--TVMHHHV--A-PVRQIILS 630 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~--V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l--~~~~~H~--~-~V~~l~~s 630 (1496)
...+...+.|+.. |..+.+.+. | -..|+||+.||.|++||++..... .+...|. | ..+++.++
T Consensus 1244 --ds~v~~~R~h~~~~~Iv~~slq~~-----G---~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH 1313 (1387)
T KOG1517|consen 1244 --DSLVCVYREHNDVEPIVHLSLQRQ-----G---LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVH 1313 (1387)
T ss_pred --cccceeecccCCcccceeEEeecC-----C---CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeec
Confidence 1345667888887 999998774 1 337999999999999999874322 2222332 4 48999999
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCC-------CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEE
Q 000450 631 PPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH-------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFI 703 (1496)
Q Consensus 631 Pd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH-------~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~V 703 (1496)
++ ..+++||+. +.|+||++.. +.+..+..+ ...+.+++|+|-.-.+++|..| .+|.|
T Consensus 1314 ~h------apiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D--------s~V~i 1377 (1387)
T KOG1517|consen 1314 EH------APIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD--------STVSI 1377 (1387)
T ss_pred cC------CCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhccCC--------ceEEE
Confidence 88 789999998 9999999863 333333222 2357999999999999999877 99999
Q ss_pred EECCCCe
Q 000450 704 WDVKTGA 710 (1496)
Q Consensus 704 WDl~tg~ 710 (1496)
|..+.++
T Consensus 1378 Ys~~k~~ 1384 (1387)
T KOG1517|consen 1378 YSCEKPR 1384 (1387)
T ss_pred eecCCcC
Confidence 9876543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-09 Score=118.87 Aligned_cols=152 Identities=17% Similarity=0.217 Sum_probs=116.0
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.++.|+++|.+.+|.... ++.... -....+.+.....|.++|.++.|.+. -..=++|+.+..+..|
T Consensus 167 lllaGyEsghvv~wd~S~---~~~~~~--~~~~~kv~~~~ash~qpvlsldyas~---------~~rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLST---GDKIIQ--LPQSSKVESPNASHKQPVLSLDYASS---------CDRGISGGADDKLVMY 232 (323)
T ss_pred EEEEeccCCeEEEEEccC---Cceeec--cccccccccchhhccCcceeeeechh---------hcCCcCCCccccceee
Confidence 688999999999954331 100000 01111233345679999999999764 3344788888899999
Q ss_pred ECCC--CceE--EEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCC
Q 000450 607 DLGS--GNLI--TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRG 682 (1496)
Q Consensus 607 Dl~t--g~~l--~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~ 682 (1496)
++.. |.+. ...+...-.|..+.+.|| ++++++++.|+.||+|+.++++++..+.-|.+.|++++|+|+..
T Consensus 233 Sl~~s~gslq~~~e~~lknpGv~gvrIRpD------~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~ 306 (323)
T KOG0322|consen 233 SLNHSTGSLQIRKEITLKNPGVSGVRIRPD------GKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE 306 (323)
T ss_pred eeccccCcccccceEEecCCCccceEEccC------CcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc
Confidence 9874 3322 222333446888888888 99999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 683 YIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 683 ~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
.++.++.| ++|-+|++
T Consensus 307 lmAaaskD--------~rISLWkL 322 (323)
T KOG0322|consen 307 LMAAASKD--------ARISLWKL 322 (323)
T ss_pred hhhhccCC--------ceEEeeec
Confidence 99999999 99999986
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.4e-09 Score=122.53 Aligned_cols=194 Identities=16% Similarity=0.176 Sum_probs=125.0
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCccccccccccccccccccc
Q 000450 20 TATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSS 99 (1496)
Q Consensus 20 tava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g~~s 99 (1496)
-+++|+.||..|+||+.||.+++|+... ..+......|.+.|.+|. |+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-----~~t~l~e~~~~~eV~DL~---------------------------FS 195 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-----MLTILEEIAHHAEVKDLD---------------------------FS 195 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-----chhhhhhHhhcCccccce---------------------------eC
Confidence 6899999999999999999999999752 344455568999999998 78
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCC---eEEEEcccccccCCccccccccccccccc
Q 000450 100 LDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNP---RYVCIGCCFIDTNQLSDHHSFESVEGDLV 176 (1496)
Q Consensus 100 ~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~---~ll~~G~~~id~~~l~~~~~~~~v~~~~~ 176 (1496)
+|+++|+|-+.| ..+||++++|.++++..-. .-..--.-|+|..++ .|.+.... .+
T Consensus 196 ~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~-~k~~~~~~cRF~~d~~~~~l~laa~~-~~------------------ 254 (398)
T KOG0771|consen 196 PDGKFLASIGAD-SARVWSVNTGAALARKTPF-SKDEMFSSCRFSVDNAQETLRLAASQ-FP------------------ 254 (398)
T ss_pred CCCcEEEEecCC-ceEEEEeccCchhhhcCCc-ccchhhhhceecccCCCceEEEEEec-CC------------------
Confidence 889999999999 9999999999888764311 001112334565444 22222111 00
Q ss_pred ccccCCCCCCCCccEEEEEECCc-eEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCcccc
Q 000450 177 SEDKEVPMKNPPKCTLVIVDTYG-LTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDR 255 (1496)
Q Consensus 177 ~~d~~~~~~~~~~~~I~v~D~~t-~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~~~~ 255 (1496)
...-..+.+-+|+-.. ++..+.++ +... |++|+|+ +||+ .+.+|+.||.|-+++..+-..
T Consensus 255 -------~~~v~~~~~~~w~~~~~l~~~~~~~--~~~s--iSsl~VS---~dGk--f~AlGT~dGsVai~~~~~lq~--- 315 (398)
T KOG0771|consen 255 -------GGGVRLCDISLWSGSNFLRLRKKIK--RFKS--ISSLAVS---DDGK--FLALGTMDGSVAIYDAKSLQR--- 315 (398)
T ss_pred -------CCceeEEEeeeeccccccchhhhhh--ccCc--ceeEEEc---CCCc--EEEEeccCCcEEEEEeceeee---
Confidence 0000114445554421 11111111 1222 8999998 4555 477789999999999876420
Q ss_pred ccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCC
Q 000450 256 EEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKD 299 (1496)
Q Consensus 256 ~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~ 299 (1496)
+. ...+.|..-+..|.|+||.+.++.++.+
T Consensus 316 ------------~~--~vk~aH~~~VT~ltF~Pdsr~~~svSs~ 345 (398)
T KOG0771|consen 316 ------------LQ--YVKEAHLGFVTGLTFSPDSRYLASVSSD 345 (398)
T ss_pred ------------eE--eehhhheeeeeeEEEcCCcCcccccccC
Confidence 10 1123366678899999998777775554
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.9e-08 Score=123.60 Aligned_cols=258 Identities=14% Similarity=0.142 Sum_probs=170.0
Q ss_pred eeeEEEeecceeeeeeeeeeccccccccccCeEEEEEccccCCCCCcceeEeccCC----ceeeeccccccccCCCCccc
Q 000450 400 KFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGF----SFVDWVNNSTFLDENEGSCT 475 (1496)
Q Consensus 400 ~~~~~f~~~~~~l~~v~s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~----~~~~w~~~~~~~~~~dG~~i 475 (1496)
...+.|++..+.++... |+++ .+.+|++....+.....-....... ....|..... +.
T Consensus 245 v~~~~f~p~~p~ll~gG--~y~G--------qV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~------~~-- 306 (555)
T KOG1587|consen 245 VTCLKFCPFDPNLLAGG--CYNG--------QVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEH------NT-- 306 (555)
T ss_pred eeEEEeccCCcceEEee--ccCc--------eEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCC------CC--
Confidence 45778888888877654 2333 3778986554431111000111111 1256755431 11
Q ss_pred ceeecccccCccccccccCCCCCC-C-cccccc------cCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEeccccc
Q 000450 476 GKSDLTFCQDTVPRSEHVDSRQAG-D-GRDDFV------HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFER 547 (1496)
Q Consensus 476 ~~l~~s~~~~~i~lWd~~~~~~~~-~-~~~~~~------~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~ 547 (1496)
.+...+.+|.+..|++..-..+. . +..... .....++++.+.+ ..|+.++.|++.|.|....+.-...
T Consensus 307 -~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~---~~p~~FiVGTe~G~v~~~~r~g~~~ 382 (555)
T KOG1587|consen 307 -EFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP---TDPNHFIVGTEEGKVYKGCRKGYTP 382 (555)
T ss_pred -ceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeecc---CCCceEEEEcCCcEEEEEeccCCcc
Confidence 35666679999999876533321 1 111111 1123456665443 4467999999999998844331111
Q ss_pred CCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECC-CCceEEEEcccCCCEEE
Q 000450 548 HNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG-SGNLITVMHHHVAPVRQ 626 (1496)
Q Consensus 548 ~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~-tg~~l~~~~~H~~~V~~ 626 (1496)
. .....+.+..+..|.++|+++.++|- ....+.|++ |-+|++|.-. ...++..+..+...|++
T Consensus 383 ~-------~~~~~~~~~~~~~h~g~v~~v~~nPF--------~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~ 446 (555)
T KOG1587|consen 383 A-------PEVSYKGHSTFITHIGPVYAVSRNPF--------YPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTD 446 (555)
T ss_pred c-------ccccccccccccccCcceEeeecCCC--------ccceeeeec-cceeEeccccCCCCcchhhhhccceeee
Confidence 0 00112345566789999999999996 245666666 9999999988 67788888889999999
Q ss_pred EEECCCCCCCCCCCEEEEEeCCCcEEEEECCC--CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEE
Q 000450 627 IILSPPQTEHPWSDCFLSVGEDFSVALASLET--LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1496)
Q Consensus 627 l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~--~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VW 704 (1496)
++|+|-. ..+|+++..||.+-+||+.. .+++.+..-+......+.|++.|+.|++|... |++++|
T Consensus 447 vaWSptr-----pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~--------G~~~~~ 513 (555)
T KOG1587|consen 447 VAWSPTR-----PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDAN--------GTTHIL 513 (555)
T ss_pred eEEcCcC-----ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCC--------CcEEEE
Confidence 9999984 56999999999999999964 44555555555667889999999999999888 999999
Q ss_pred ECCC
Q 000450 705 DVKT 708 (1496)
Q Consensus 705 Dl~t 708 (1496)
++..
T Consensus 514 ~l~~ 517 (555)
T KOG1587|consen 514 KLSE 517 (555)
T ss_pred EcCc
Confidence 9854
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.3e-09 Score=122.55 Aligned_cols=152 Identities=20% Similarity=0.216 Sum_probs=116.3
Q ss_pred ccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCC----C---cc------ccCCcceEEEEecCCccEEEE
Q 000450 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPG----A---SL------KVNSHVSRQYFLGHTGAVLCL 576 (1496)
Q Consensus 510 ~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~----~---~~------d~~s~~~~~~l~gH~~~V~~L 576 (1496)
..|+|+.+.+-. +..++.+..+|.+.+++-....+...+. + .. ...+..++..+.--.+.|+.+
T Consensus 220 tsvT~ikWvpg~---~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f 296 (636)
T KOG2394|consen 220 SSVTCIKWVPGS---DSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEF 296 (636)
T ss_pred cceEEEEEEeCC---CceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccce
Confidence 678888855532 1367788889999885332111110000 0 00 011112333333335578899
Q ss_pred EEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEEC
Q 000450 577 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1496)
Q Consensus 577 a~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl 656 (1496)
+|+|| +++||+-|.||.+||+|..+.+++..++..-+...||.|+|| |++|++|++|--|.||++
T Consensus 297 ~FS~D---------G~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD------GKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 297 AFSPD---------GKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD------GKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred eEcCC---------CceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC------ccEEEecCCcceEEEEEe
Confidence 99997 999999999999999999999999999988899999999999 999999999999999999
Q ss_pred CCCcEEEEecCCCCCcEEEEEcC
Q 000450 657 ETLRVERMFPGHPNYPAKVVWDC 679 (1496)
Q Consensus 657 ~~~~~l~~~~gH~~~V~~V~~sp 679 (1496)
..++++..-.||.++|..|+|.|
T Consensus 362 ~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 362 EERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ccceEEEeccccccceeeEeecc
Confidence 99999999999999999999984
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-09 Score=127.22 Aligned_cols=126 Identities=22% Similarity=0.301 Sum_probs=110.0
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEE-cccCCCEEEEEECCCCCCCCCCCE
Q 000450 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM-HHHVAPVRQIILSPPQTEHPWSDC 641 (1496)
Q Consensus 563 ~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~-~~H~~~V~~l~~sPd~~~~~~g~~ 641 (1496)
.+.|.||+|.|+||.|+.+ |.+|+|||.|-.+.|||....++++.+ ++|++-|.++.|-|... ..+
T Consensus 43 E~eL~GH~GCVN~LeWn~d---------G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tn----nri 109 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNAD---------GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTN----NRI 109 (758)
T ss_pred hhhhccccceecceeecCC---------CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCC----CeE
Confidence 4568899999999999987 999999999999999999988888877 57999999999999731 568
Q ss_pred EEEEeCCCcEEEEECCC----------CcEEEEecCCCCCcEEEEEcCCC-CEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000450 642 FLSVGEDFSVALASLET----------LRVERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 642 l~Sgs~DgsV~lWdl~~----------~~~l~~~~gH~~~V~~V~~spdg-~~L~tgs~D~sg~~D~dg~V~VWDl~tg 709 (1496)
++||+.|..|+|+|+.. ....+.+..|...|..++--|++ ..+.+++.| |+|+-+|++..
T Consensus 110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasED--------GtirQyDiREp 180 (758)
T KOG1310|consen 110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASED--------GTIRQYDIREP 180 (758)
T ss_pred EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCC--------cceeeecccCC
Confidence 99999999999999984 23456677899999999999998 677788888 99999999863
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-08 Score=113.19 Aligned_cols=166 Identities=16% Similarity=0.170 Sum_probs=123.5
Q ss_pred cCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcc
Q 000450 507 HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 586 (1496)
Q Consensus 507 ~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~ 586 (1496)
.+...+|+..+.. ..|+++.+.+-|-+..||.... + ..+.....|-.|...|..++|...
T Consensus 148 ~~~aPlTSFDWne---~dp~~igtSSiDTTCTiWdie~--~----------~~~~vkTQLIAHDKEV~DIaf~~~----- 207 (364)
T KOG0290|consen 148 EFCAPLTSFDWNE---VDPNLIGTSSIDTTCTIWDIET--G----------VSGTVKTQLIAHDKEVYDIAFLKG----- 207 (364)
T ss_pred ccCCccccccccc---CCcceeEeecccCeEEEEEEee--c----------cccceeeEEEecCcceeEEEeccC-----
Confidence 3445667644222 4577999999999999943321 0 123345668899999999999875
Q ss_pred cCcCCCEEEEEeCCCcEEEEECCCCceEEEEcc---cCCCEEEEEECCCCCCCCCCCEEEEEeCC-CcEEEEECCC-CcE
Q 000450 587 GWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH---HVAPVRQIILSPPQTEHPWSDCFLSVGED-FSVALASLET-LRV 661 (1496)
Q Consensus 587 ~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~---H~~~V~~l~~sPd~~~~~~g~~l~Sgs~D-gsV~lWdl~~-~~~ 661 (1496)
..+.++|.|.||.||+||++..+--..+.. -..+...++|++.. -+++++...| ..|.+.|++. ..+
T Consensus 208 ---s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD-----pnymATf~~dS~~V~iLDiR~P~tp 279 (364)
T KOG0290|consen 208 ---SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD-----PNYMATFAMDSNKVVILDIRVPCTP 279 (364)
T ss_pred ---ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC-----chHHhhhhcCCceEEEEEecCCCcc
Confidence 267999999999999999987654333322 14578888888863 6688887665 5789999986 456
Q ss_pred EEEecCCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 662 ERMFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 662 l~~~~gH~~~V~~V~~spdg~-~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
+..+.+|.+.|+.|+|.|... .|.+++.| ..+-|||+.+
T Consensus 280 va~L~~H~a~VNgIaWaPhS~~hictaGDD--------~qaliWDl~q 319 (364)
T KOG0290|consen 280 VARLRNHQASVNGIAWAPHSSSHICTAGDD--------CQALIWDLQQ 319 (364)
T ss_pred eehhhcCcccccceEecCCCCceeeecCCc--------ceEEEEeccc
Confidence 888999999999999999765 55666555 8999999965
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.6e-09 Score=123.67 Aligned_cols=170 Identities=15% Similarity=0.220 Sum_probs=127.5
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
-+.+|..-|.+.+..-. ... ..++.+.+ + .-.+..|+|+.|-|. +...++.+-.+|.+.++
T Consensus 187 dllIGf~tGqvq~idp~--~~~--~sklfne~-----r--~i~ktsvT~ikWvpg--------~~~~Fl~a~~sGnlyly 247 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPI--NFE--VSKLFNEE-----R--LINKSSVTCIKWVPG--------SDSLFLVAHASGNLYLY 247 (636)
T ss_pred ceEEeeccCceEEecch--hhH--HHHhhhhc-----c--cccccceEEEEEEeC--------CCceEEEEEecCceEEe
Confidence 57888889998873211 100 00000000 0 012367999999886 25677777889999999
Q ss_pred ECCC--------------C--------------ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q 000450 607 DLGS--------------G--------------NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1496)
Q Consensus 607 Dl~t--------------g--------------~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~ 658 (1496)
|..- + .++..+.--.+.|...+|+|| |+++|+++.||.+||+|..+
T Consensus 248 ~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D------G~~LA~VSqDGfLRvF~fdt 321 (636)
T KOG2394|consen 248 DKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD------GKYLATVSQDGFLRIFDFDT 321 (636)
T ss_pred eccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC------CceEEEEecCceEEEeeccH
Confidence 7641 1 122223333457889999998 99999999999999999999
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeec
Q 000450 659 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1496)
Q Consensus 659 ~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~ 729 (1496)
.+.+..+..--+...||+|||||+||++|+.| .-|.||.+..++.+..-.||.+.|-.+.|.+
T Consensus 322 ~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGED--------DLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 322 QELLGVMKSYFGGLLCVCWSPDGKYIVTGGED--------DLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHHHHHHHhhccceEEEEEcCCccEEEecCCc--------ceEEEEEeccceEEEeccccccceeeEeecc
Confidence 88877776666779999999999999999999 8999999999999999999999988887764
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.6e-08 Score=118.57 Aligned_cols=167 Identities=20% Similarity=0.316 Sum_probs=119.7
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCC
Q 000450 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1496)
Q Consensus 561 ~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~ 640 (1496)
.+-..+.||++.|.||...|. +.+|+||+.||+|+||.+.+|.|+.++.- .+.|.+|+|+|.. ..
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~---------G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~-----~~ 455 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPS---------GEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLS-----DL 455 (733)
T ss_pred eeeeeEeccCCeEEEEEecCC---------cceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCC-----Cc
Confidence 345567999999999999986 89999999999999999999999988764 4589999999984 34
Q ss_pred EEEEEeCCCcEEEEECCCC-------------------------------------cEEEEecCCCCCcEEEEEcCCCCE
Q 000450 641 CFLSVGEDFSVALASLETL-------------------------------------RVERMFPGHPNYPAKVVWDCPRGY 683 (1496)
Q Consensus 641 ~l~Sgs~DgsV~lWdl~~~-------------------------------------~~l~~~~gH~~~V~~V~~spdg~~ 683 (1496)
+++.++.+..+.|.+..-| +-++..-.|...|..|.|+..|+|
T Consensus 456 ~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDY 535 (733)
T KOG0650|consen 456 CVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDY 535 (733)
T ss_pred eeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCce
Confidence 5555555555555443211 012233357888999999999999
Q ss_pred EEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEee
Q 000450 684 IACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQS 763 (1496)
Q Consensus 684 L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W 763 (1496)
|++.+.+ ++...|.|.++..+....-+.--.+.+..+.|.+ +.+.+-++....+|++
T Consensus 536 latV~~~-----~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHP------------------s~p~lfVaTq~~vRiY 592 (733)
T KOG0650|consen 536 LATVMPD-----SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHP------------------SKPYLFVATQRSVRIY 592 (733)
T ss_pred EEEeccC-----CCcceEEEEecccccccCchhhcCCceeEEEecC------------------CCceEEEEeccceEEE
Confidence 9999886 2236899999976554444443444555665653 2233344445678888
Q ss_pred cc
Q 000450 764 QI 765 (1496)
Q Consensus 764 ~l 765 (1496)
+|
T Consensus 593 dL 594 (733)
T KOG0650|consen 593 DL 594 (733)
T ss_pred eh
Confidence 86
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.5e-07 Score=110.76 Aligned_cols=278 Identities=14% Similarity=0.084 Sum_probs=160.3
Q ss_pred CCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCccccccccccc
Q 000450 12 GTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENS 91 (1496)
Q Consensus 12 ~~~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~ 91 (1496)
+.+-.|+|.-++|-|||..|+.++ +..+.++|.+. ....+.|.||...|.|+|
T Consensus 8 r~~~~hci~d~afkPDGsqL~lAA-g~rlliyD~nd-----G~llqtLKgHKDtVycVA--------------------- 60 (1081)
T KOG1538|consen 8 RDKAEHCINDIAFKPDGTQLILAA-GSRLLVYDTSD-----GTLLQPLKGHKDTVYCVA--------------------- 60 (1081)
T ss_pred hcccccchheeEECCCCceEEEec-CCEEEEEeCCC-----cccccccccccceEEEEE---------------------
Confidence 345678999999999998887664 45678999984 457788999999999999
Q ss_pred ccccccccCCCCEEEEEeCCCeEEEEECC-CCeEEEeecCCCCCCCCcEEEEcCCCCe-EEEEcc-----cccccCCccc
Q 000450 92 SNVMGKSSLDNGALISACTDGVLCVWSRS-SGHCRRRRKLPPWVGSPSVICTLPSNPR-YVCIGC-----CFIDTNQLSD 164 (1496)
Q Consensus 92 ~~~~g~~s~d~~~LaSas~DG~l~VWdv~-~G~ci~~~~l~~~~g~~~~i~~~s~~~~-ll~~G~-----~~id~~~l~~ 164 (1496)
.+.||+++|||+.|..+.||+-. .|.. .+.|+.......|.|-.. ++.|.- ...+.+....
T Consensus 61 ------ys~dGkrFASG~aDK~VI~W~~klEG~L------kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K 128 (1081)
T KOG1538|consen 61 ------YAKDGKRFASGSADKSVIIWTSKLEGIL------KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK 128 (1081)
T ss_pred ------EccCCceeccCCCceeEEEeccccccee------eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh
Confidence 46778889999999999999864 2321 122222222223333221 222211 0111111111
Q ss_pred ccccccccccccccccCCCCCCCCccEEEEEECCceEEEEEEe-cCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEE
Q 000450 165 HHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVF-HGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQ 243 (1496)
Q Consensus 165 ~~~~~~v~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~-~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~ 243 (1496)
..+..++-++.-.-|+......-.+++|-+-+....+-...-. .|..++ |..+++.|++..|..+-+.+++.+.++.
T Consensus 129 ~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nsp--iwsi~~~p~sg~G~~di~aV~DW~qTLS 206 (1081)
T KOG1538|consen 129 HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSP--IWSICWNPSSGEGRNDILAVADWGQTLS 206 (1081)
T ss_pred hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCC--ceEEEecCCCCCCccceEEEEeccceeE
Confidence 1222223333333333333333445666666544333322222 233344 8889998887667644444559999999
Q ss_pred EEECCCCCccccccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeEEEEEcCCCc-ccceeeeeccee
Q 000450 244 LVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGS-TIGEICFVDNLF 322 (1496)
Q Consensus 244 lWdl~~~~~~~~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~~~~l~d~~~-~ige~~~~~~~l 322 (1496)
.+.++..- .+.++.+ + =+..+++++++|..++.++.+.. +.++.... .+|..
T Consensus 207 Fy~LsG~~----------Igk~r~L------~---FdP~CisYf~NGEy~LiGGsdk~-L~~fTR~GvrLGTv------- 259 (1081)
T KOG1538|consen 207 FYQLSGKQ----------IGKDRAL------N---FDPCCISYFTNGEYILLGGSDKQ-LSLFTRDGVRLGTV------- 259 (1081)
T ss_pred EEEeccee----------ecccccC------C---CCchhheeccCCcEEEEccCCCc-eEEEeecCeEEeec-------
Confidence 99988641 0111111 1 12267899999999999887763 33344332 11111
Q ss_pred EeeCCCCCceeeeeEEeechhhhhhcccccccccccceEEEEcCCCcEEEEEEec
Q 000450 323 CLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISY 377 (1496)
Q Consensus 323 ~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~~~l~~l~~ 377 (1496)
.....|+-.....++ ...++++..||..--|++.+
T Consensus 260 -----g~~D~WIWtV~~~PN---------------sQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 260 -----GEQDSWIWTVQAKPN---------------SQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred -----cccceeEEEEEEccC---------------CceEEEEEccCeeehhhhHH
Confidence 112345544444443 23788888898877777653
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.3e-08 Score=106.84 Aligned_cols=124 Identities=18% Similarity=0.249 Sum_probs=95.6
Q ss_pred CCccEEEEEEecCCCCcccCcCCCEE--EEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEe
Q 000450 569 HTGAVLCLAAHRMVGTAKGWSFNEVL--VSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 646 (1496)
Q Consensus 569 H~~~V~~La~spd~~~~~~~~~~~~L--~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs 646 (1496)
..++|.+++|+|+ ++.+ +.|..+..|.+||++ ++.+..+. ...+..+.|+|+ |++++.++
T Consensus 58 ~~~~I~~~~WsP~---------g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~------G~~l~~~g 119 (194)
T PF08662_consen 58 KEGPIHDVAWSPN---------GNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPD------GRFLVLAG 119 (194)
T ss_pred CCCceEEEEECcC---------CCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCC------CCEEEEEE
Confidence 3467999999997 5543 446678899999996 77777764 567899999999 89999887
Q ss_pred CC---CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 647 ED---FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 647 ~D---gsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
.+ |.+.+||.++.+.+..+. |. .++.++|+|||++++++..... -..|+.++||+. +|+++...
T Consensus 120 ~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r--~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 120 FGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPR--LRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred ccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccc--eeccccEEEEEe-cCeEeEec
Confidence 54 669999999988887765 33 4789999999999999875311 122378999998 57766543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.1e-08 Score=112.87 Aligned_cols=176 Identities=10% Similarity=0.114 Sum_probs=140.7
Q ss_pred CccEEEEEeeccccccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcc
Q 000450 509 EKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 586 (1496)
Q Consensus 509 ~~~Vts~~~~s~~~f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~ 586 (1496)
...|+++. |||. .+++++.||.++|+..+ -+..+.++.+.--.-+|.+..|+|+
T Consensus 213 ~~~I~sv~------FHp~~plllvaG~d~~lrifqvD-------------Gk~N~~lqS~~l~~fPi~~a~f~p~----- 268 (514)
T KOG2055|consen 213 HGGITSVQ------FHPTAPLLLVAGLDGTLRIFQVD-------------GKVNPKLQSIHLEKFPIQKAEFAPN----- 268 (514)
T ss_pred cCCceEEE------ecCCCceEEEecCCCcEEEEEec-------------CccChhheeeeeccCccceeeecCC-----
Confidence 35788877 8887 78888999999996554 2233455555555678999999997
Q ss_pred cCcCCC-EEEEEeCCCcEEEEECCCCceE--EEEcccC-CCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000450 587 GWSFNE-VLVSGSMDCSIRIWDLGSGNLI--TVMHHHV-APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1496)
Q Consensus 587 ~~~~~~-~L~SGs~DgtV~lWDl~tg~~l--~~~~~H~-~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l 662 (1496)
|+ .+++++.-.....||+.+.+.. ..+.++. ..+....++|+ +++|+..|..|.|.|....+++.+
T Consensus 269 ----G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd------~~fia~~G~~G~I~lLhakT~eli 338 (514)
T KOG2055|consen 269 ----GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHD------SNFIAIAGNNGHIHLLHAKTKELI 338 (514)
T ss_pred ----CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCC------CCeEEEcccCceEEeehhhhhhhh
Confidence 55 8999999999999999987743 3444443 35778888999 899999999999999999999998
Q ss_pred EEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000450 663 RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1496)
Q Consensus 663 ~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~ 728 (1496)
.+|. -.+.|..++|+.|++.|++.|.+ |.|++||++...+++.+....+ +-..++|
T Consensus 339 ~s~K-ieG~v~~~~fsSdsk~l~~~~~~--------GeV~v~nl~~~~~~~rf~D~G~-v~gts~~ 394 (514)
T KOG2055|consen 339 TSFK-IEGVVSDFTFSSDSKELLASGGT--------GEVYVWNLRQNSCLHRFVDDGS-VHGTSLC 394 (514)
T ss_pred heee-eccEEeeEEEecCCcEEEEEcCC--------ceEEEEecCCcceEEEEeecCc-cceeeee
Confidence 8876 45678999999999999998888 9999999999999988876553 3334466
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.3e-09 Score=122.91 Aligned_cols=166 Identities=17% Similarity=0.192 Sum_probs=129.6
Q ss_pred cccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEE-ecCCccEEEEEEecC
Q 000450 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-LGHTGAVLCLAAHRM 581 (1496)
Q Consensus 503 ~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l-~gH~~~V~~La~spd 581 (1496)
+.+.||.+-|.++.+..+.. .|++|+.|-.+.| |+. -..+.+..+ .||++-|.|+.|-|.
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~----lL~SGSDD~r~iv--Wd~-------------~~~KllhsI~TgHtaNIFsvKFvP~ 104 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE----LLASGSDDTRLIV--WDP-------------FEYKLLHSISTGHTANIFSVKFVPY 104 (758)
T ss_pred hhhccccceecceeecCCCC----EEeecCCcceEEe--ecc-------------hhcceeeeeecccccceeEEeeecc
Confidence 45789999999999888776 9999999999998 552 223444443 799999999999886
Q ss_pred CCCcccCcCCCEEEEEeCCCcEEEEECCC----------CceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcE
Q 000450 582 VGTAKGWSFNEVLVSGSMDCSIRIWDLGS----------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 651 (1496)
Q Consensus 582 ~~~~~~~~~~~~L~SGs~DgtV~lWDl~t----------g~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV 651 (1496)
. .+++++||+.|..|+++|+.. .+..+.+..|+..|..++..|++ .+.|.++++||++
T Consensus 105 t-------nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-----PhtfwsasEDGti 172 (758)
T KOG1310|consen 105 T-------NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-----PHTFWSASEDGTI 172 (758)
T ss_pred C-------CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCC-----CceEEEecCCcce
Confidence 2 378999999999999999984 23556778899999999999983 4899999999999
Q ss_pred EEEECCCCc-------EEEEe-cCCC--CCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 652 ALASLETLR-------VERMF-PGHP--NYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 652 ~lWdl~~~~-------~l~~~-~gH~--~~V~~V~~spdg~-~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
+-+|++... +...+ ..+. -...++..+|... +|++|+.| --.++||.+
T Consensus 173 rQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsd--------pfarLYD~R 231 (758)
T KOG1310|consen 173 RQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSD--------PFARLYDRR 231 (758)
T ss_pred eeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCC--------chhhhhhhh
Confidence 999998632 11111 1122 2457889999664 78888887 889999963
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-08 Score=116.51 Aligned_cols=151 Identities=15% Similarity=0.192 Sum_probs=118.5
Q ss_pred EEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCC
Q 000450 513 SSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNE 592 (1496)
Q Consensus 513 ts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~ 592 (1496)
..+++..+.. .+++|..||.++||.|..+ ..+.....|.+.|.+|.|+|| ++
T Consensus 148 k~vaf~~~gs----~latgg~dg~lRv~~~Ps~---------------~t~l~e~~~~~eV~DL~FS~d---------gk 199 (398)
T KOG0771|consen 148 KVVAFNGDGS----KLATGGTDGTLRVWEWPSM---------------LTILEEIAHHAEVKDLDFSPD---------GK 199 (398)
T ss_pred eEEEEcCCCC----EeeeccccceEEEEecCcc---------------hhhhhhHhhcCccccceeCCC---------Cc
Confidence 3455444444 8999999999999888632 234445679999999999998 89
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEc-----------------------------------------cc-----------
Q 000450 593 VLVSGSMDCSIRIWDLGSGNLITVMH-----------------------------------------HH----------- 620 (1496)
Q Consensus 593 ~L~SGs~DgtV~lWDl~tg~~l~~~~-----------------------------------------~H----------- 620 (1496)
+|++-+.| ..+|||..+|..+.... .+
T Consensus 200 ~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~ 278 (398)
T KOG0771|consen 200 FLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI 278 (398)
T ss_pred EEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh
Confidence 99999999 89999999872111000 01
Q ss_pred --CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEec-CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCC
Q 000450 621 --VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-GHPNYPAKVVWDCPRGYIACLCRDHSRTSDA 697 (1496)
Q Consensus 621 --~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~-gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~ 697 (1496)
...|.+++++++ |++++-|+.||.|.+++..+.++++..+ .|...|+.+.|+||.+++++.+.|
T Consensus 279 ~~~~siSsl~VS~d------Gkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~------- 345 (398)
T KOG0771|consen 279 KRFKSISSLAVSDD------GKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSD------- 345 (398)
T ss_pred hccCcceeEEEcCC------CcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccC-------
Confidence 136888999988 9999999999999999999999887664 699999999999999999987776
Q ss_pred CCEEEEEEC
Q 000450 698 VDVLFIWDV 706 (1496)
Q Consensus 698 dg~V~VWDl 706 (1496)
.+..|-.+
T Consensus 346 -~~~~v~~l 353 (398)
T KOG0771|consen 346 -NEAAVTKL 353 (398)
T ss_pred -CceeEEEE
Confidence 56666544
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.6e-08 Score=124.46 Aligned_cols=143 Identities=22% Similarity=0.255 Sum_probs=122.0
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
++++|+.-|.|.+|.|. .+.+++ .+.||.+.+..+.++.| +++++|.|+|.++++|
T Consensus 147 ~i~~gsv~~~iivW~~~--------------~dn~p~-~l~GHeG~iF~i~~s~d---------g~~i~s~SdDRsiRlW 202 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPH--------------EDNKPI-RLKGHEGSIFSIVTSLD---------GRYIASVSDDRSIRLW 202 (967)
T ss_pred EEEeccccccEEEEecc--------------ccCCcc-eecccCCceEEEEEccC---------CcEEEEEecCcceeee
Confidence 88999999999996654 112233 68899999999999987 8999999999999999
Q ss_pred ECCCCceEE-EEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC-CcEEEEEcCCCCEE
Q 000450 607 DLGSGNLIT-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN-YPAKVVWDCPRGYI 684 (1496)
Q Consensus 607 Dl~tg~~l~-~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~-~V~~V~~spdg~~L 684 (1496)
++++.+... +..+|+..|+++.|.|. .++|++.|-+.++|+.. +..+..+.+|.. .++.++..++...+
T Consensus 203 ~i~s~~~~~~~~fgHsaRvw~~~~~~n--------~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~ 273 (967)
T KOG0974|consen 203 PIDSREVLGCTGFGHSARVWACCFLPN--------RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIK 273 (967)
T ss_pred ecccccccCcccccccceeEEEEeccc--------eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEE
Confidence 999988765 77799999999999985 89999999999999755 555668888865 68999999999999
Q ss_pred EEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 685 ACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 685 ~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
+|++.| +.+++||.....
T Consensus 274 vT~g~D--------s~lk~~~l~~r~ 291 (967)
T KOG0974|consen 274 VTGGND--------STLKLWDLNGRG 291 (967)
T ss_pred EeeccC--------cchhhhhhhccc
Confidence 999988 999999987643
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-09 Score=133.37 Aligned_cols=120 Identities=18% Similarity=0.347 Sum_probs=109.5
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCC
Q 000450 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1496)
Q Consensus 561 ~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~ 640 (1496)
+.++.+.||...|.|..|... +.++++|++|..|+||..+++.++....+|.+.|+.++.+.+ ..
T Consensus 181 k~ikrLlgH~naVyca~fDrt---------g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~------n~ 245 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRT---------GRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN------NT 245 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccc---------cceEeecCccceeeeeeccchhhhccCCCCccccchhccchh------hh
Confidence 445667899999999999875 899999999999999999999999999999999999999887 67
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 641 CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 641 ~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
.++++|.|..|++|-+.++.++..+.||.+.|++++|+|-. +.+.| |++++||.+
T Consensus 246 ~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~d--------gt~~~wd~r 300 (1113)
T KOG0644|consen 246 MIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDD--------GTCRIWDAR 300 (1113)
T ss_pred hhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCC--------CceEecccc
Confidence 89999999999999999999999999999999999999965 33444 999999987
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.9e-07 Score=114.87 Aligned_cols=206 Identities=16% Similarity=0.119 Sum_probs=142.8
Q ss_pred eecccccCccccccccCCCC--CCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQ--AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~--~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~ 555 (1496)
++.+..+|.+-+||+..... ...+......|...|+++.++.... +..+++++.||.|..|.-+.+... ...-
T Consensus 258 l~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~--~~~f~s~ssDG~i~~W~~~~l~~P---~e~~ 332 (555)
T KOG1587|consen 258 LAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEH--NTEFFSLSSDGSICSWDTDMLSLP---VEGL 332 (555)
T ss_pred EEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCC--CCceEEEecCCcEeeeeccccccc---hhhc
Confidence 67778899999999987654 3334444467888898888766443 246899999999999765544331 1000
Q ss_pred ccCCcce-EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEE---EECCCCc-----eEEEEcccCCCEEE
Q 000450 556 KVNSHVS-RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI---WDLGSGN-----LITVMHHHVAPVRQ 626 (1496)
Q Consensus 556 d~~s~~~-~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~l---WDl~tg~-----~l~~~~~H~~~V~~ 626 (1496)
..++... ...+ .-...++++.|.+. +...++.|+.+|.|.- ++.+.+. ....+..|.++|++
T Consensus 333 ~~~~~~~~~~~~-~~~~~~t~~~F~~~--------~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~ 403 (555)
T KOG1587|consen 333 LLESKKHKGQQS-SKAVGATSLKFEPT--------DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYA 403 (555)
T ss_pred cccccccccccc-ccccceeeEeeccC--------CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEe
Confidence 0000000 0011 11346899999886 3788999999999876 3443332 23466778999999
Q ss_pred EEECCCCCCCCCCCEEEEEeCCCcEEEEECC-CCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000450 627 IILSPPQTEHPWSDCFLSVGEDFSVALASLE-TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 627 l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~-~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWD 705 (1496)
+.++|-. -..|.+++ |.+|+||+.. ...++..+..+...|++++|||...-++....+ ||.|.+||
T Consensus 404 v~~nPF~-----~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~-------~G~l~iWD 470 (555)
T KOG1587|consen 404 VSRNPFY-----PKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDG-------DGNLDIWD 470 (555)
T ss_pred eecCCCc-----cceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcC-------CCceehhh
Confidence 9999972 33555555 9999999988 778888888899999999999988755444332 39999999
Q ss_pred CCCCe
Q 000450 706 VKTGA 710 (1496)
Q Consensus 706 l~tg~ 710 (1496)
+....
T Consensus 471 Ll~~~ 475 (555)
T KOG1587|consen 471 LLQDD 475 (555)
T ss_pred hhccc
Confidence 96543
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.5e-07 Score=115.79 Aligned_cols=239 Identities=14% Similarity=0.084 Sum_probs=158.1
Q ss_pred CCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEE
Q 000450 496 RQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLC 575 (1496)
Q Consensus 496 ~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~ 575 (1496)
.+.|.++..+.+|...|..++..++.. +.+++|+.||+|++|+...+.+. ..+.++..++.--..++.+
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~---s~FvsgS~DGtVKvW~~~k~~~~--------~~s~rS~ltys~~~sr~~~ 1103 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHT---SLFVSGSDDGTVKVWNLRKLEGE--------GGSARSELTYSPEGSRVEK 1103 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCC---ceEEEecCCceEEEeeehhhhcC--------cceeeeeEEEeccCCceEE
Confidence 345677788889999998888766552 38999999999999666544432 1233444555444667888
Q ss_pred EEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC--c-----------------eE--E-------------------
Q 000450 576 LAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG--N-----------------LI--T------------------- 615 (1496)
Q Consensus 576 La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg--~-----------------~l--~------------------- 615 (1496)
+...+. ++.+|.|+.||.|++.++... . .+ +
T Consensus 1104 vt~~~~---------~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~ 1174 (1431)
T KOG1240|consen 1104 VTMCGN---------GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSR 1174 (1431)
T ss_pred EEeccC---------CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccc
Confidence 887765 678888899999999888641 0 00 0
Q ss_pred ---------------EEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEec-CCCCCcEEEEEcC
Q 000450 616 ---------------VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-GHPNYPAKVVWDC 679 (1496)
Q Consensus 616 ---------------~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~-gH~~~V~~V~~sp 679 (1496)
......|.|++++.+|. ++.++.|..-|.+.+||++-+.++.... ++..++..+..+|
T Consensus 1175 iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~------~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1175 IVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPW------CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred eEEecchhhhhHHhhhcCccccceeEEEecCC------ceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeec
Confidence 01112356788888876 8899999999999999999888776653 3446787777766
Q ss_pred CC---CEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeeccc---ccccccceEEcCCcccccccee
Q 000450 680 PR---GYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGI---SMNSISGSVLNGNTSVSSLLLP 753 (1496)
Q Consensus 680 dg---~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~---~~~~~sg~v~~g~~~~s~~l~~ 753 (1496)
-. ...++++.. +.+.|.+|++++|.+-+++-.-.....+..+.+.. .+.... .+.+|--...+-++.
T Consensus 1249 ~~~~~S~~vs~~~~------~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~-~~~~~~~~~~~~~lt 1321 (1431)
T KOG1240|consen 1249 TYPQESVSVSAGSS------SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLA-GISCGVCEKNGFLLT 1321 (1431)
T ss_pred cCCCCceEEEeccc------CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCccc-ceeeecccCCceeee
Confidence 43 466665542 12789999999998887776553444444343321 011111 122233344455556
Q ss_pred eccCCcEEeecccc
Q 000450 754 IHEDGTFRQSQIQN 767 (1496)
Q Consensus 754 ~~~D~~ir~W~l~~ 767 (1496)
...|.+||.|+...
T Consensus 1322 ggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1322 GGSDMKIRKWDPTR 1335 (1431)
T ss_pred cCCccceeeccCCC
Confidence 66699999999633
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.3e-07 Score=109.77 Aligned_cols=182 Identities=13% Similarity=0.115 Sum_probs=128.8
Q ss_pred CcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccC--CCC-----------------------CCc
Q 000450 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH--NSP-----------------------GAS 554 (1496)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~--d~~-----------------------~~~ 554 (1496)
.+.+++++|.+.|.++++..+.. ++++|+.|..+.+|.-. +++. .++ .-.
T Consensus 44 ~llqtLKgHKDtVycVAys~dGk----rFASG~aDK~VI~W~~k-lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFgl 118 (1081)
T KOG1538|consen 44 TLLQPLKGHKDTVYCVAYAKDGK----RFASGSADKSVIIWTSK-LEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGL 118 (1081)
T ss_pred ccccccccccceEEEEEEccCCc----eeccCCCceeEEEeccc-ccceeeeccCCeeeEeecCchHHHhhhcchhhccc
Confidence 56678999999999999888887 99999999999995321 1110 000 012
Q ss_pred cccCCcceEEEEecC--CccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEc---ccCCCEEEEEE
Q 000450 555 LKVNSHVSRQYFLGH--TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH---HHVAPVRQIIL 629 (1496)
Q Consensus 555 ~d~~s~~~~~~l~gH--~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~---~H~~~V~~l~~ 629 (1496)
|..+... ...| ..+|.+.+|..| |++|+-|-.||||.+-+- +|+....+. +...+|+++.|
T Consensus 119 WS~~qK~----V~K~kss~R~~~CsWtnD---------GqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~ 184 (1081)
T KOG1538|consen 119 WSPEQKS----VSKHKSSSRIICCSWTND---------GQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICW 184 (1081)
T ss_pred cChhhhh----HHhhhhheeEEEeeecCC---------CcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEe
Confidence 2221110 0112 235666677665 899999999999999874 454433333 46678999999
Q ss_pred CCCCCC----------------------------------------CCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC
Q 000450 630 SPPQTE----------------------------------------HPWSDCFLSVGEDFSVALASLETLRVERMFPGHP 669 (1496)
Q Consensus 630 sPd~~~----------------------------------------~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~ 669 (1496)
+|..+. -+.|.+++.|+.|+.++++- +.|-.+.+.....
T Consensus 185 ~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D 263 (1081)
T KOG1538|consen 185 NPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQD 263 (1081)
T ss_pred cCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccc
Confidence 997432 25677777888888887775 4455566665667
Q ss_pred CCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000450 670 NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 670 ~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg 709 (1496)
.+|+.|..+|++.+++.||.| |+|--|++-..
T Consensus 264 ~WIWtV~~~PNsQ~v~~GCqD--------GTiACyNl~fS 295 (1081)
T KOG1538|consen 264 SWIWTVQAKPNSQYVVVGCQD--------GTIACYNLIFS 295 (1081)
T ss_pred eeEEEEEEccCCceEEEEEcc--------CeeehhhhHHh
Confidence 799999999999999999999 99999998543
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.3e-07 Score=111.64 Aligned_cols=191 Identities=14% Similarity=0.133 Sum_probs=138.4
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccC----------------CEEEEEEcCCcEEEEE
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAP----------------YAIVYGFFSGEIEVIQ 541 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P----------------~~lv~Gs~dG~I~V~~ 541 (1496)
++....++.+++|++.+++.. +.......-.+.-++..+.=...++| ..+|.|...|+|.+
T Consensus 8 ~A~~~~~g~l~iw~t~~~~~~-~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~-- 84 (541)
T KOG4547|consen 8 FALSTGDGRLRIWDTAKNQLQ-QEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL-- 84 (541)
T ss_pred EeecCCCCeEEEEEccCceee-eeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE--
Confidence 455566777888887765331 11111111122233332222222444 16889999999888
Q ss_pred ecccccCCCCCCccccCCcceEEEE--ecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcc
Q 000450 542 FDLFERHNSPGASLKVNSHVSRQYF--LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH 619 (1496)
Q Consensus 542 ~~~l~~~d~~~~~~d~~s~~~~~~l--~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~ 619 (1496)
++ ...++....+ .+|.+.|+++.++.+ -..|.|++.|+.|..|+...+..++.+.+
T Consensus 85 ys-------------~~~g~it~~~st~~h~~~v~~~~~~~~---------~~ciyS~~ad~~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 85 YS-------------VAGGEITAKLSTDKHYGNVNEILDAQR---------LGCIYSVGADLKVVYILEKEKVIIRIWKE 142 (541)
T ss_pred EE-------------ecCCeEEEEEecCCCCCcceeeecccc---------cCceEecCCceeEEEEecccceeeeeecc
Confidence 33 2234445555 469999999998875 57899999999999999999999999999
Q ss_pred cCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCC-----CCEEEEEEcCCCCC
Q 000450 620 HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP-----RGYIACLCRDHSRT 694 (1496)
Q Consensus 620 H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spd-----g~~L~tgs~D~sg~ 694 (1496)
....+.++.++|| +.++++++ +.|++||+++++.+..|.||.++|.++.|.-+ |.|++++..-
T Consensus 143 ~~~~~~sl~is~D------~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~---- 210 (541)
T KOG4547|consen 143 QKPLVSSLCISPD------GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA---- 210 (541)
T ss_pred CCCccceEEEcCC------CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccc----
Confidence 9999999999999 88998886 68999999999999999999999999999776 6777654322
Q ss_pred CCCCCEEEEEECCC
Q 000450 695 SDAVDVLFIWDVKT 708 (1496)
Q Consensus 695 ~D~dg~V~VWDl~t 708 (1496)
+.-+.+|-++.
T Consensus 211 ---~r~i~~w~v~~ 221 (541)
T KOG4547|consen 211 ---ERGITVWVVEK 221 (541)
T ss_pred ---ccceeEEEEEc
Confidence 14577786643
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.3e-07 Score=102.44 Aligned_cols=119 Identities=13% Similarity=0.186 Sum_probs=97.6
Q ss_pred CCccEEEEEEecCCCCcccCcCCCEEEE-Ee-CCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEe
Q 000450 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVS-GS-MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 646 (1496)
Q Consensus 569 H~~~V~~La~spd~~~~~~~~~~~~L~S-Gs-~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs 646 (1496)
|...+.++.+++. +.+|+- ++ .-|.|.+||+.+-+....+..|.+++.+++|+|+ |.++|++|
T Consensus 128 n~~gl~AlS~n~~---------n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~------G~llATAS 192 (391)
T KOG2110|consen 128 NPKGLCALSPNNA---------NCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPD------GTLLATAS 192 (391)
T ss_pred CccceEeeccCCC---------CceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCC------CCEEEEec
Confidence 3444665555553 344442 22 3578999999999999999999999999999999 99999999
Q ss_pred CCCcE-EEEECCCCcEEEEecCCCC--CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 647 EDFSV-ALASLETLRVERMFPGHPN--YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 647 ~DgsV-~lWdl~~~~~l~~~~gH~~--~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
+.|+| ||+++.+|+.+..|+.... .|.+++|+||+.+|.+.+.. ++|+|+.++...
T Consensus 193 eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T--------eTVHiFKL~~~~ 251 (391)
T KOG2110|consen 193 EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT--------ETVHIFKLEKVS 251 (391)
T ss_pred cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC--------CeEEEEEecccc
Confidence 99976 8999999999999975433 57999999999999988877 999999987644
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.3e-07 Score=113.37 Aligned_cols=197 Identities=12% Similarity=0.062 Sum_probs=127.7
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
+.+......+.+||...++.-...... .-....|+.+.++.+.. -..+++|+.||.|+| |+..... |
T Consensus 1079 i~~ad~r~~i~vwd~e~~~~l~~F~n~-~~~~t~Vs~l~liNe~D--~aLlLtas~dGvIRI--wk~y~~~------~-- 1145 (1387)
T KOG1517|consen 1079 IAAADDRERIRVWDWEKGRLLNGFDNG-AFPDTRVSDLELINEQD--DALLLTASSDGVIRI--WKDYADK------W-- 1145 (1387)
T ss_pred eEEcCCcceEEEEecccCceeccccCC-CCCCCccceeeeecccc--hhheeeeccCceEEE--ecccccc------c--
Confidence 444455678899998876442211111 11235688888776542 127899999999999 5432221 1
Q ss_pred CCcceEEEE---ec----CCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEccc-CCCEEEEEE
Q 000450 558 NSHVSRQYF---LG----HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH-VAPVRQIIL 629 (1496)
Q Consensus 558 ~s~~~~~~l---~g----H~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H-~~~V~~l~~ 629 (1496)
...+.+..+ .+ -.+.-.-+.|... ..+|+++|.-..|+|||.......+.+... ...|+++.-
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~---------~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQ---------SGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA 1216 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhh---------CCeEEecCCeeEEEEEecccceeEeecccCCCccceeecc
Confidence 111222211 22 1222233456654 344444445789999999988877766543 345666654
Q ss_pred CCCCCCCCCCCEEEEEeCCCcEEEEECCCCc---EEEEecCCCCC--cEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEE
Q 000450 630 SPPQTEHPWSDCFLSVGEDFSVALASLETLR---VERMFPGHPNY--PAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFI 703 (1496)
Q Consensus 630 sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~---~l~~~~gH~~~--V~~V~~spdg~-~L~tgs~D~sg~~D~dg~V~V 703 (1496)
+-. .|+.++.|..||+|++||.+... .+...+.|... |..+.+.+.|- .|++||.| |.|++
T Consensus 1217 ~~~-----~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~--------G~I~~ 1283 (1387)
T KOG1517|consen 1217 DLV-----HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD--------GDIQL 1283 (1387)
T ss_pred ccc-----CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC--------CeEEE
Confidence 333 28999999999999999987532 46777889887 99999988664 59999999 99999
Q ss_pred EECCCC
Q 000450 704 WDVKTG 709 (1496)
Q Consensus 704 WDl~tg 709 (1496)
||++..
T Consensus 1284 ~DlR~~ 1289 (1387)
T KOG1517|consen 1284 LDLRMS 1289 (1387)
T ss_pred EecccC
Confidence 999874
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.1e-08 Score=113.94 Aligned_cols=161 Identities=17% Similarity=0.197 Sum_probs=129.1
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.++..+.||.+.| .. ..++..+....|.+.|.|-.|+|| |.-|++.+.||.|++|
T Consensus 77 ~~~i~s~DGkf~i--l~--------------k~~rVE~sv~AH~~A~~~gRW~~d---------GtgLlt~GEDG~iKiW 131 (737)
T KOG1524|consen 77 TLLICSNDGRFVI--LN--------------KSARVERSISAHAAAISSGRWSPD---------GAGLLTAGEDGVIKIW 131 (737)
T ss_pred eEEEEcCCceEEE--ec--------------ccchhhhhhhhhhhhhhhcccCCC---------CceeeeecCCceEEEE
Confidence 5777889999998 22 234556677899999999999998 8999999999999999
Q ss_pred ECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEE
Q 000450 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIAC 686 (1496)
Q Consensus 607 Dl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~t 686 (1496)
. ++|.+..++.....+|+|++|.|+. .+.+.+.+ +.+.+=.+.-...+.....|.+-|.++.|++..+.+++
T Consensus 132 S-rsGMLRStl~Q~~~~v~c~~W~p~S-----~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~s 203 (737)
T KOG1524|consen 132 S-RSGMLRSTVVQNEESIRCARWAPNS-----NSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIAS 203 (737)
T ss_pred e-ccchHHHHHhhcCceeEEEEECCCC-----CceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceee
Confidence 8 6788877887788899999999993 34444443 34555566666667778899999999999999999999
Q ss_pred EEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeec
Q 000450 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1496)
Q Consensus 687 gs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~ 729 (1496)
|+.| -..+|||.. |+.+..-..|.-+++.+.|.+
T Consensus 204 gGED--------~kfKvWD~~-G~~Lf~S~~~ey~ITSva~np 237 (737)
T KOG1524|consen 204 GGED--------FRFKIWDAQ-GANLFTSAAEEYAITSVAFNP 237 (737)
T ss_pred cCCc--------eeEEeeccc-CcccccCChhccceeeeeecc
Confidence 9999 999999974 666666667777777766664
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.6e-07 Score=104.96 Aligned_cols=173 Identities=12% Similarity=0.026 Sum_probs=131.4
Q ss_pred ccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEec-CCccEEEEEEec
Q 000450 502 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLG-HTGAVLCLAAHR 580 (1496)
Q Consensus 502 ~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~g-H~~~V~~La~sp 580 (1496)
...+.+|.+-|.++.|..... +|++|+.|-.+++|..+.+. ...+.++++.... |...|.||+|..
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~----~L~SGGDD~~~~~W~~de~~---------~~k~~KPI~~~~~~H~SNIF~L~F~~ 115 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDR----FLASGGDDMHGRVWNVDELM---------VRKTPKPIGVMEHPHRSNIFSLEFDL 115 (609)
T ss_pred hhhhhhhccccceeeeccCCe----EEeecCCcceeeeechHHHH---------hhcCCCCceeccCccccceEEEEEcc
Confidence 344688999999998665554 89999999999996554221 1234466665543 447899999987
Q ss_pred CCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEccc--CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q 000450 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH--VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1496)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H--~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~ 658 (1496)
. ++.+.||+.+++|...|+++.+.+.++... .+.|..+..+|. .++|++.+.|+.|.+||.+.
T Consensus 116 ~---------N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~------DN~~~~~t~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 116 E---------NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT------DNTLIVVTRAKLVSFIDNRD 180 (609)
T ss_pred C---------CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCC------CceEEEEecCceEEEEeccC
Confidence 5 789999999999999999999988887543 358999999998 89999999999999999987
Q ss_pred Cc-EEE--EecCCCCCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 659 LR-VER--MFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 659 ~~-~l~--~~~gH~~~V~~V~~spdg~-~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
.. ... ...........+-|+|... +|++.+.. +-+-+||++..+
T Consensus 181 ~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~--------~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 181 RQNPISLVLPANSGKNFYTAEFHPETPALILVNSET--------GGPNVFDRRMQA 228 (609)
T ss_pred CCCCCceeeecCCCccceeeeecCCCceeEEecccc--------CCCCceeecccc
Confidence 54 221 1112334567899999765 55666665 789999997644
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=111.88 Aligned_cols=152 Identities=14% Similarity=0.062 Sum_probs=114.1
Q ss_pred cccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEec
Q 000450 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1496)
Q Consensus 501 ~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~sp 580 (1496)
.-..+..|.+.+.|-.+.++.. .+++.++||.|++|.- +|-...++.....+|.|++|.|
T Consensus 96 VE~sv~AH~~A~~~gRW~~dGt----gLlt~GEDG~iKiWSr----------------sGMLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 96 VERSISAHAAAISSGRWSPDGA----GLLTAGEDGVIKIWSR----------------SGMLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred hhhhhhhhhhhhhhcccCCCCc----eeeeecCCceEEEEec----------------cchHHHHHhhcCceeEEEEECC
Confidence 3345678888888877444444 8999999999999432 2222233334456899999999
Q ss_pred CCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCc
Q 000450 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1496)
Q Consensus 581 d~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~ 660 (1496)
+ +...+.+.+. .+.+=-+.....+-.++.|.+-|.++.|+|. .+.++||++|-..++||-. |+
T Consensus 156 ~--------S~~vl~c~g~--h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~------s~lI~sgGED~kfKvWD~~-G~ 218 (737)
T KOG1524|consen 156 N--------SNSIVFCQGG--HISIKPLAANSKIIRWRAHDGLVLSLSWSTQ------SNIIASGGEDFRFKIWDAQ-GA 218 (737)
T ss_pred C--------CCceEEecCC--eEEEeecccccceeEEeccCcEEEEeecCcc------ccceeecCCceeEEeeccc-Cc
Confidence 8 2667777654 3555566666667889999999999999998 8999999999999999965 66
Q ss_pred EEEEecCCCCCcEEEEEcCCCCEEEEEEcC
Q 000450 661 VERMFPGHPNYPAKVVWDCPRGYIACLCRD 690 (1496)
Q Consensus 661 ~l~~~~gH~~~V~~V~~spdg~~L~tgs~D 690 (1496)
.+..-..|..+|++|+|.|| ...++++.+
T Consensus 219 ~Lf~S~~~ey~ITSva~npd-~~~~v~S~n 247 (737)
T KOG1524|consen 219 NLFTSAAEEYAITSVAFNPE-KDYLLWSYN 247 (737)
T ss_pred ccccCChhccceeeeeeccc-cceeeeeee
Confidence 66666778889999999998 444556653
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.9e-07 Score=110.36 Aligned_cols=190 Identities=8% Similarity=0.085 Sum_probs=123.1
Q ss_pred CccccccccCCCCCCCcccccccCCccEEEEEeeccccccCC--EEEEEE-cCCcEEEEEecccccCCCCCCccccCCcc
Q 000450 485 DTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGF-FSGEIEVIQFDLFERHNSPGASLKVNSHV 561 (1496)
Q Consensus 485 ~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~--~lv~Gs-~dG~I~V~~~~~l~~~d~~~~~~d~~s~~ 561 (1496)
..+.+||+..... .....+.+|. .+.. |+|+ .++++. .+|.+.||.|+ ..++.
T Consensus 228 ~~i~i~dl~tg~~--~~l~~~~g~~---~~~~------wSPDG~~La~~~~~~g~~~Iy~~d-------------~~~~~ 283 (429)
T PRK01742 228 SQLVVHDLRSGAR--KVVASFRGHN---GAPA------FSPDGSRLAFASSKDGVLNIYVMG-------------ANGGT 283 (429)
T ss_pred cEEEEEeCCCCce--EEEecCCCcc---Ccee------ECCCCCEEEEEEecCCcEEEEEEE-------------CCCCC
Confidence 3577888754322 1122233332 2334 5665 677764 68888887666 22233
Q ss_pred eEEEEecCCccEEEEEEecCCCCcccCcCCCEEE-EEeCCCcEEEEECCCC-ceEEEEcccCCCEEEEEECCCCCCCCCC
Q 000450 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLV-SGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1496)
Q Consensus 562 ~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~-SGs~DgtV~lWDl~tg-~~l~~~~~H~~~V~~l~~sPd~~~~~~g 639 (1496)
...+..|...+....|+|| ++.|+ ++..++...+|++... .....+ .+.+ ....|+|+ |
T Consensus 284 -~~~lt~~~~~~~~~~wSpD---------G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpD------G 344 (429)
T PRK01742 284 -PSQLTSGAGNNTEPSWSPD---------GQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISAD------G 344 (429)
T ss_pred -eEeeccCCCCcCCEEECCC---------CCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCC------C
Confidence 3456667778889999998 66555 4456788888887532 222333 3443 45778998 8
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC--CCCeEEEEEeC
Q 000450 640 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV--KTGARERVLRG 717 (1496)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl--~tg~~~~~l~g 717 (1496)
+.++.++.|+ +.+||+.+++.......+ ....+.|+|||++|+.++.+ +.+++|++ .+|...+.+.+
T Consensus 345 ~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~--------g~~~~l~~~~~~G~~~~~l~~ 413 (429)
T PRK01742 345 KTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQ--------GLGKVLQLVSADGRFKARLPG 413 (429)
T ss_pred CEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcC--------CCceEEEEEECCCCceEEccC
Confidence 8888888766 555999988765443332 24568899999999999887 76777765 36888888988
Q ss_pred CCCCceeeeee
Q 000450 718 TASHSMFDHFC 728 (1496)
Q Consensus 718 h~a~vi~~~~~ 728 (1496)
|.+.+....+.
T Consensus 414 ~~g~~~~p~ws 424 (429)
T PRK01742 414 SDGQVKFPAWS 424 (429)
T ss_pred CCCCCCCcccC
Confidence 87654443333
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.4e-07 Score=114.18 Aligned_cols=146 Identities=17% Similarity=0.159 Sum_probs=116.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEE-EecCCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER-MFPGHP 669 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~-~~~gH~ 669 (1496)
.-++++|+.-+.|.+|+...-+.-..+.+|.+.|.++.++-+ |++++++|.|+++|+|++++.+.+. ..-||+
T Consensus 145 ~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~d------g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 145 ELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLD------GRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccC------CcEEEEEecCcceeeeecccccccCccccccc
Confidence 568999999999999999843333468999999999999998 9999999999999999999988876 677999
Q ss_pred CCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccc
Q 000450 670 NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSS 749 (1496)
Q Consensus 670 ~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~ 749 (1496)
++|+.++|.|. ++++++.| .+.++|+. .++.+.++.+|...-+--...+.....
T Consensus 219 aRvw~~~~~~n--~i~t~ged--------ctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~--------------- 272 (967)
T KOG0974|consen 219 ARVWACCFLPN--RIITVGED--------CTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVII--------------- 272 (967)
T ss_pred ceeEEEEeccc--eeEEeccc--------eEEEEEec-ccceehhhhhhhhcceeEEEEcCCceE---------------
Confidence 99999999998 89999999 99999975 456666899998766553233221111
Q ss_pred cceeeccCCcEEeecccccc
Q 000450 750 LLLPIHEDGTFRQSQIQNDE 769 (1496)
Q Consensus 750 ~l~~~~~D~~ir~W~l~~~e 769 (1496)
.++-..|+++|.|++....
T Consensus 273 -~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 273 -KVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred -EEeeccCcchhhhhhhccc
Confidence 1222338899999875443
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.6e-07 Score=99.25 Aligned_cols=192 Identities=12% Similarity=0.035 Sum_probs=142.2
Q ss_pred ecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccC
Q 000450 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1496)
Q Consensus 479 ~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~ 558 (1496)
+.+..+..+.+++..+..+ -....++..|...|+.+.+.+... +|++++.|..-.| |....++
T Consensus 26 Av~~~~~evhiy~~~~~~~-w~~~htls~Hd~~vtgvdWap~sn----rIvtcs~drnayV--w~~~~~~---------- 88 (361)
T KOG1523|consen 26 AVSPNNHEVHIYSMLGADL-WEPAHTLSEHDKIVTGVDWAPKSN----RIVTCSHDRNAYV--WTQPSGG---------- 88 (361)
T ss_pred EeccCCceEEEEEecCCCC-ceeceehhhhCcceeEEeecCCCC----ceeEccCCCCccc--cccCCCC----------
Confidence 3334444455555444332 134567889999999988444443 8999999999999 5532221
Q ss_pred CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceE----EEEcccCCCEEEEEECCCCC
Q 000450 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLI----TVMHHHVAPVRQIILSPPQT 634 (1496)
Q Consensus 559 s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l----~~~~~H~~~V~~l~~sPd~~ 634 (1496)
+-++...+..|+..++|+.|+|. ++.++.||.-..|.||-++..+-- +.-+-+...|+++.|+|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~---------enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn-- 157 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPK---------ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN-- 157 (361)
T ss_pred eeccceeEEEeccceeeEeecCc---------CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC--
Confidence 22455667779999999999997 799999999999999998755422 233446678999999998
Q ss_pred CCCCCCEEEEEeCCCcEEEEEC-----CC-------------CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCC
Q 000450 635 EHPWSDCFLSVGEDFSVALASL-----ET-------------LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSD 696 (1496)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl-----~~-------------~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D 696 (1496)
+-+++.||.|+.+++++. ++ |+.+..+....+.|..+.|+|+|..|+-.+.|
T Consensus 158 ----nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd------ 227 (361)
T KOG1523|consen 158 ----NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD------ 227 (361)
T ss_pred ----cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC------
Confidence 789999999999999974 21 23334444567789999999999999999998
Q ss_pred CCCEEEEEECCCCe
Q 000450 697 AVDVLFIWDVKTGA 710 (1496)
Q Consensus 697 ~dg~V~VWDl~tg~ 710 (1496)
+++.+=|.....
T Consensus 228 --s~v~~~da~~p~ 239 (361)
T KOG1523|consen 228 --STVSFVDAAGPS 239 (361)
T ss_pred --CceEEeecCCCc
Confidence 899999886654
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-06 Score=99.62 Aligned_cols=184 Identities=17% Similarity=0.150 Sum_probs=119.8
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
++....+..+++++.....+. .+.. .....|+|+++-+-.. ..++.|+..| |.+|..+.-.......+ .
T Consensus 113 fava~nddvVriy~ksst~pt-~Lks---~sQrnvtclawRPlsa---selavgCr~g-IciW~~s~tln~~r~~~---~ 181 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSSTCPT-KLKS---VSQRNVTCLAWRPLSA---SELAVGCRAG-ICIWSDSRTLNANRNIR---M 181 (445)
T ss_pred hhhhccCcEEEEeccCCCCCc-eecc---hhhcceeEEEeccCCc---ceeeeeecce-eEEEEcCcccccccccc---c
Confidence 445556667777776653331 1111 1135689998433221 2788888765 66644331111000000 0
Q ss_pred CCcce--EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEe-CCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCC
Q 000450 558 NSHVS--RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634 (1496)
Q Consensus 558 ~s~~~--~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs-~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~ 634 (1496)
.+.-+ +..-.|| ..|+++.|.+| +..|++++ .|..|.|||..+|..+....--.+.+.-+.|+||
T Consensus 182 ~s~~~~qvl~~pgh-~pVtsmqwn~d---------gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd-- 249 (445)
T KOG2139|consen 182 MSTHHLQVLQDPGH-NPVTSMQWNED---------GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD-- 249 (445)
T ss_pred ccccchhheeCCCC-ceeeEEEEcCC---------CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCC--
Confidence 01111 2223456 68999999997 78888887 5678999999999876555445677999999999
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCC-CcEEEEecCCCCCcEEEEEcCCCCEEEEEEc
Q 000450 635 EHPWSDCFLSVGEDFSVALASLET-LRVERMFPGHPNYPAKVVWDCPRGYIACLCR 689 (1496)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl~~-~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~ 689 (1496)
+++|..+.-|+..++|+... ..+++-.. ..+.|...+|+|+|++|+-.+.
T Consensus 250 ----gd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 250 ----GDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred ----CCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc
Confidence 99999999999999996543 33333333 3348999999999999988776
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.5e-08 Score=113.87 Aligned_cols=181 Identities=15% Similarity=0.188 Sum_probs=133.9
Q ss_pred cccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCC
Q 000450 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1496)
Q Consensus 503 ~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~ 582 (1496)
..+..| ..|..+.|++.-. .|++++..|.+.. . |+.+|+.+..+..-.+.+..+.-+|.
T Consensus 204 HClk~~-~~v~rLeFLPyHf----LL~~~~~~G~L~Y---~------------DVS~GklVa~~~t~~G~~~vm~qNP~- 262 (545)
T KOG1272|consen 204 HCLKRH-IRVARLEFLPYHF----LLVAASEAGFLKY---Q------------DVSTGKLVASIRTGAGRTDVMKQNPY- 262 (545)
T ss_pred eehhhc-Cchhhhcccchhh----eeeecccCCceEE---E------------eechhhhhHHHHccCCccchhhcCCc-
Confidence 334433 4577777444333 7888888888875 2 45567777777666788888888886
Q ss_pred CCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000450 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1496)
Q Consensus 583 ~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l 662 (1496)
+..+-.|...|+|.+|.....+++..+..|.++|.+|++.|. |++++|.+.|+.++|||++....+
T Consensus 263 --------NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~------G~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 263 --------NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRG------GRYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred --------cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCC------CcEEeecccccceeEeeecccccc
Confidence 788999999999999999999999999999999999999998 999999999999999999998877
Q ss_pred EEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE-CCC--CeEEEEEeCCC--CCceeeeeec
Q 000450 663 RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD-VKT--GARERVLRGTA--SHSMFDHFCK 729 (1496)
Q Consensus 663 ~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWD-l~t--g~~~~~l~gh~--a~vi~~~~~~ 729 (1496)
.++.. ..+...+++|--| .|+++-. ..|.||. .-. +....-+..|. +.+..+.||+
T Consensus 329 ~t~~t-p~~a~~ls~Sqkg-lLA~~~G---------~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP 389 (545)
T KOG1272|consen 329 HTYRT-PHPASNLSLSQKG-LLALSYG---------DHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCP 389 (545)
T ss_pred ceeec-CCCcccccccccc-ceeeecC---------CeeeeehhhhcCCCCCCcchhhhccCcccccceecc
Confidence 76654 4566778887544 4554443 4799994 322 23333333333 2455567885
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.4e-07 Score=101.21 Aligned_cols=159 Identities=12% Similarity=0.059 Sum_probs=126.9
Q ss_pred CccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccC
Q 000450 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW 588 (1496)
Q Consensus 509 ~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~ 588 (1496)
...|+|-++.++.. .++.+..+.++.|+.+.. ... -+..+++..|...|+++.|.|.
T Consensus 10 ~~pitchAwn~drt----~iAv~~~~~evhiy~~~~-------~~~-----w~~~htls~Hd~~vtgvdWap~------- 66 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT----QIAVSPNNHEVHIYSMLG-------ADL-----WEPAHTLSEHDKIVTGVDWAPK------- 66 (361)
T ss_pred cCceeeeeecCCCc----eEEeccCCceEEEEEecC-------CCC-----ceeceehhhhCcceeEEeecCC-------
Confidence 35788888666665 899999999999966541 111 2567889999999999999997
Q ss_pred cCCCEEEEEeCCCcEEEEECCC-C--ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcE----
Q 000450 589 SFNEVLVSGSMDCSIRIWDLGS-G--NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV---- 661 (1496)
Q Consensus 589 ~~~~~L~SGs~DgtV~lWDl~t-g--~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~---- 661 (1496)
.+.+++|+.|..-.+|.... + ++.-.+.-+...+++|.|+|. .+.|++||.-+.|.||=++...-
T Consensus 67 --snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~------enkFAVgSgar~isVcy~E~ENdWWVs 138 (361)
T KOG1523|consen 67 --SNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPK------ENKFAVGSGARLISVCYYEQENDWWVS 138 (361)
T ss_pred --CCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCc------CceEEeccCccEEEEEEEecccceehh
Confidence 78999999999999999843 3 344566678889999999999 89999999999999987764321
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 662 ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 662 l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
.+.-..+.+.|+++.|+|++-+|++|+.| +..||+..
T Consensus 139 KhikkPirStv~sldWhpnnVLlaaGs~D--------~k~rVfSa 175 (361)
T KOG1523|consen 139 KHIKKPIRSTVTSLDWHPNNVLLAAGSTD--------GKCRVFSA 175 (361)
T ss_pred hhhCCccccceeeeeccCCcceecccccC--------cceeEEEE
Confidence 11223456678999999999999999999 99999864
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.9e-07 Score=105.98 Aligned_cols=126 Identities=17% Similarity=0.164 Sum_probs=107.4
Q ss_pred eEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECC------CCceEEEEcc-cCCCEEEEEECCCCC
Q 000450 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG------SGNLITVMHH-HVAPVRQIILSPPQT 634 (1496)
Q Consensus 562 ~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~------tg~~l~~~~~-H~~~V~~l~~sPd~~ 634 (1496)
+.+-+.+|.+.|++|.|+.+ +++|+||+.|..+++|.+. +.+++..+.. |..-|.+++|.-.
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N---------~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-- 116 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHN---------DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-- 116 (609)
T ss_pred hhhhhhhhccccceeeeccC---------CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC--
Confidence 34456799999999999986 8999999999999999985 4566766655 4488999999987
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCC--CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGH--PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH--~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
...+.+|+.|++|.+.|+++.+.+..+... .+.|+.+..+|.++.+++.+.+ +.|.+||.+...
T Consensus 117 ----N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~--------~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 117 ----NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRA--------KLVSFIDNRDRQ 182 (609)
T ss_pred ----CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecC--------ceEEEEeccCCC
Confidence 778999999999999999999988887522 2389999999999999999998 999999997643
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00022 Score=86.61 Aligned_cols=110 Identities=24% Similarity=0.222 Sum_probs=76.2
Q ss_pred EEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccccccccccccCCCCEEEEEeC
Q 000450 31 LYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALISACT 110 (1496)
Q Consensus 31 LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g~~s~d~~~LaSas~ 110 (1496)
+++-..+|+|.+.|..+ .+.+..+....+.-..+. +++|+.++..++.
T Consensus 9 ~V~~~~~~~v~viD~~t-----~~~~~~i~~~~~~h~~~~---------------------------~s~Dgr~~yv~~r 56 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGAT-----NKVVARIPTGGAPHAGLK---------------------------FSPDGRYLYVANR 56 (369)
T ss_dssp EEEEGGGTEEEEEETTT------SEEEEEE-STTEEEEEE----------------------------TT-SSEEEEEET
T ss_pred EEEecCCCEEEEEECCC-----CeEEEEEcCCCCceeEEE---------------------------ecCCCCEEEEEcC
Confidence 35667889999999984 345555553333222233 6888889999999
Q ss_pred CCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCcccccccccccccccccccCCCCCCCCcc
Q 000450 111 DGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDKEVPMKNPPKC 190 (1496)
Q Consensus 111 DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~~~~d~~~~~~~~~~~ 190 (1496)
||.|.++|+.+++.+.+.+. |....-.++++|++++.++++ ..+
T Consensus 57 dg~vsviD~~~~~~v~~i~~----G~~~~~i~~s~DG~~~~v~n~--------------------------------~~~ 100 (369)
T PF02239_consen 57 DGTVSVIDLATGKVVATIKV----GGNPRGIAVSPDGKYVYVANY--------------------------------EPG 100 (369)
T ss_dssp TSEEEEEETTSSSEEEEEE-----SSEEEEEEE--TTTEEEEEEE--------------------------------ETT
T ss_pred CCeEEEEECCcccEEEEEec----CCCcceEEEcCCCCEEEEEec--------------------------------CCC
Confidence 99999999999999988765 333444678899999988876 127
Q ss_pred EEEEEECCceEEEEEEec
Q 000450 191 TLVIVDTYGLTIVQTVFH 208 (1496)
Q Consensus 191 ~I~v~D~~t~~~l~~l~~ 208 (1496)
.+.++|..|+++++.+..
T Consensus 101 ~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 101 TVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp EEEEEETTT--EEEEEE-
T ss_pred ceeEeccccccceeeccc
Confidence 899999999999998865
|
... |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.8e-06 Score=102.58 Aligned_cols=122 Identities=16% Similarity=0.243 Sum_probs=111.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEc--ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH 668 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~--~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH 668 (1496)
...++-|...|.|-+++...|+.-..+. .|.++|.++.++-+ -.||.|++.|..+.+|+..+++..+.+.+.
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~------~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~ 143 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQR------LGCIYSVGADLKVVYILEKEKVIIRIWKEQ 143 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccc------cCceEecCCceeEEEEecccceeeeeeccC
Confidence 4578888899999999999999888776 58999999998877 679999999999999999999999999988
Q ss_pred CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000450 669 PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1496)
Q Consensus 669 ~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~ 728 (1496)
...+.+++.+||++.|++++ +.|++||+++++.+..++||.+.+-+..|-
T Consensus 144 ~~~~~sl~is~D~~~l~~as----------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~ 193 (541)
T KOG4547|consen 144 KPLVSSLCISPDGKILLTAS----------RQIKVLDIETKEVVITFTGHGSPVRTLSFT 193 (541)
T ss_pred CCccceEEEcCCCCEEEecc----------ceEEEEEccCceEEEEecCCCcceEEEEEE
Confidence 88999999999999999987 579999999999999999999998888776
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-07 Score=110.12 Aligned_cols=134 Identities=16% Similarity=0.115 Sum_probs=118.6
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCC
Q 000450 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1496)
Q Consensus 560 ~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g 639 (1496)
|..+++++.| ..|..|.|-|- .-+|++++..|.++.-|+.+|+.+..+..-.+.+..+.-+|- .
T Consensus 200 GtElHClk~~-~~v~rLeFLPy---------HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~------N 263 (545)
T KOG1272|consen 200 GTELHCLKRH-IRVARLEFLPY---------HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY------N 263 (545)
T ss_pred CcEEeehhhc-Cchhhhcccch---------hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc------c
Confidence 4456666655 46899999996 578999999999999999999999999988999999999997 7
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 640 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
..+..|...|+|.+|+....+++..+..|.++|.+|++.++|.|++|.+.| ..++|||+++...+.++..
T Consensus 264 aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~D--------r~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 264 AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLD--------RKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccc--------cceeEeeeccccccceeec
Confidence 789999999999999999999998888999999999999999999999999 9999999998776655543
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.8e-07 Score=103.98 Aligned_cols=112 Identities=14% Similarity=0.249 Sum_probs=75.9
Q ss_pred CCCCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEe-eccccceeEeeeccccccccCccccccccccc
Q 000450 13 TPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAML-CGHSAPIADLSICYPAMVSRDGKAEHWKAENS 91 (1496)
Q Consensus 13 ~~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L-~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~ 91 (1496)
.++.++|..|.|...|..|++|+.|-+|.+||... ..++..+ .||...|-.-.| .
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~-----~~~~l~f~SGH~~NvfQaKF---i---------------- 194 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVS-----GSPKLSFESGHCNNVFQAKF---I---------------- 194 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhc-----cCcccccccccccchhhhhc---c----------------
Confidence 46778999999999999999999999999999974 3343333 478777755543 0
Q ss_pred ccccccccCCCCEEEEEeCCCeEEEEECC-CCeEEEeecCCCCCCCCcEEEEcCCCC--eEEEEccc
Q 000450 92 SNVMGKSSLDNGALISACTDGVLCVWSRS-SGHCRRRRKLPPWVGSPSVICTLPSNP--RYVCIGCC 155 (1496)
Q Consensus 92 ~~~~g~~s~d~~~LaSas~DG~l~VWdv~-~G~ci~~~~l~~~~g~~~~i~~~s~~~--~ll~~G~~ 155 (1496)
-+.+...+++.+.||.+++=.+. +|.|.....+-+. ..|..+.+.-|+. .++.+|.+
T Consensus 195 ------P~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h-~g~vhklav~p~sp~~f~S~geD 254 (559)
T KOG1334|consen 195 ------PFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPH-EGPVHKLAVEPDSPKPFLSCGED 254 (559)
T ss_pred ------CCCCCcCceeccccCceeeeeeccccceecceecccc-cCccceeeecCCCCCcccccccc
Confidence 14566779999999999998875 5555544333322 2334444443332 35556654
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.1e-06 Score=94.35 Aligned_cols=175 Identities=12% Similarity=0.098 Sum_probs=120.2
Q ss_pred CccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEE
Q 000450 485 DTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQ 564 (1496)
Q Consensus 485 ~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~ 564 (1496)
..+-+||-...++. .++. -...|.++. +.++++|+.- .+.|.||.+.. ..+.++
T Consensus 75 NkviIWDD~k~~~i----~el~-f~~~I~~V~------l~r~riVvvl-~~~I~VytF~~--------------n~k~l~ 128 (346)
T KOG2111|consen 75 NKVIIWDDLKERCI----IELS-FNSEIKAVK------LRRDRIVVVL-ENKIYVYTFPD--------------NPKLLH 128 (346)
T ss_pred ceEEEEecccCcEE----EEEE-eccceeeEE------EcCCeEEEEe-cCeEEEEEcCC--------------Chhhee
Confidence 45667885544332 2221 235677766 6666777765 56888866541 112222
Q ss_pred EE---ecCCccEEEEEEecCCCCcccCcCCCEEE-EEeCCCcEEEEECCCCce--EEEEcccCCCEEEEEECCCCCCCCC
Q 000450 565 YF---LGHTGAVLCLAAHRMVGTAKGWSFNEVLV-SGSMDCSIRIWDLGSGNL--ITVMHHHVAPVRQIILSPPQTEHPW 638 (1496)
Q Consensus 565 ~l---~gH~~~V~~La~spd~~~~~~~~~~~~L~-SGs~DgtV~lWDl~tg~~--l~~~~~H~~~V~~l~~sPd~~~~~~ 638 (1496)
.+ ...+| +.++ .|.. ...+|+ -|-.-|.|+|-|+..-+. ...+..|.+.|.+++++-+
T Consensus 129 ~~et~~NPkG-lC~~--~~~~-------~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~------ 192 (346)
T KOG2111|consen 129 VIETRSNPKG-LCSL--CPTS-------NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ------ 192 (346)
T ss_pred eeecccCCCc-eEee--cCCC-------CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC------
Confidence 22 11222 2222 2220 123333 344568899999986655 4778899999999999998
Q ss_pred CCEEEEEeCCCcE-EEEECCCCcEEEEecCC--CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000450 639 SDCFLSVGEDFSV-ALASLETLRVERMFPGH--PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 639 g~~l~Sgs~DgsV-~lWdl~~~~~l~~~~gH--~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg 709 (1496)
|..+||+|..|++ ||||.++|..+..++.. .+.|.+++|||+..+|++++.- |+|+|+.++..
T Consensus 193 Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK--------gTlHiF~l~~~ 258 (346)
T KOG2111|consen 193 GTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK--------GTLHIFSLRDT 258 (346)
T ss_pred ccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCC--------CeEEEEEeecC
Confidence 9999999999975 99999999999998643 3479999999999999999888 99999998753
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.4e-06 Score=96.02 Aligned_cols=157 Identities=16% Similarity=0.221 Sum_probs=112.0
Q ss_pred ccCC--EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEec-CCccEEEEEEecCCCCcccCcCCCEEEEEeC
Q 000450 523 YAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLG-HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM 599 (1496)
Q Consensus 523 f~P~--~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~g-H~~~V~~La~spd~~~~~~~~~~~~L~SGs~ 599 (1496)
|++. .++.+..|-.|++ ++. .+ ++...++. -...|+|++|-|. ....|+.|..
T Consensus 106 WhqH~~~fava~nddvVri--y~k-------------ss-t~pt~Lks~sQrnvtclawRPl--------saselavgCr 161 (445)
T KOG2139|consen 106 WHQHIIAFAVATNDDVVRI--YDK-------------SS-TCPTKLKSVSQRNVTCLAWRPL--------SASELAVGCR 161 (445)
T ss_pred echhhhhhhhhccCcEEEE--ecc-------------CC-CCCceecchhhcceeEEEeccC--------Ccceeeeeec
Confidence 5554 5677888888888 441 11 22222322 2346999999997 2567777766
Q ss_pred CCcEEEEECCCC----ce----------EEEEcccCCCEEEEEECCCCCCCCCCCEEEEEe-CCCcEEEEECCCCcEEEE
Q 000450 600 DCSIRIWDLGSG----NL----------ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG-EDFSVALASLETLRVERM 664 (1496)
Q Consensus 600 DgtV~lWDl~tg----~~----------l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs-~DgsV~lWdl~~~~~l~~ 664 (1496)
. -|++|..... .. +..-.+| .+|+++.|++| |..+++++ .|.+|.|||..++.++..
T Consensus 162 ~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d------gt~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 162 A-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED------GTILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred c-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCC------CCEEeecccCcceEEEEcCCCCCcccc
Confidence 5 4999987531 11 1122345 58999999999 88888877 578999999999988766
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEE-ECCCCeEEEEEeCCC
Q 000450 665 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW-DVKTGARERVLRGTA 719 (1496)
Q Consensus 665 ~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VW-Dl~tg~~~~~l~gh~ 719 (1496)
.+...+.+.-++||||+.+|+++.-| +..++| ..++...++-..|..
T Consensus 234 ~~~glgg~slLkwSPdgd~lfaAt~d--------avfrlw~e~q~wt~erw~lgsg 281 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSPDGDVLFAATCD--------AVFRLWQENQSWTKERWILGSG 281 (445)
T ss_pred cccCCCceeeEEEcCCCCEEEEeccc--------ceeeeehhcccceecceeccCC
Confidence 65566678899999999999999998 999999 445556666655544
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.7e-06 Score=89.59 Aligned_cols=136 Identities=13% Similarity=0.185 Sum_probs=87.6
Q ss_pred EEEEECC-CCceEEEEcc-cCCCEEEEEECCCCCCCCCCCEEEEE--eCCCcEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 000450 603 IRIWDLG-SGNLITVMHH-HVAPVRQIILSPPQTEHPWSDCFLSV--GEDFSVALASLETLRVERMFPGHPNYPAKVVWD 678 (1496)
Q Consensus 603 V~lWDl~-tg~~l~~~~~-H~~~V~~l~~sPd~~~~~~g~~l~Sg--s~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~s 678 (1496)
..+|.++ .+.....+.. ..++|.+++|+|+ |+.|+.+ ..+..|.+||++ ++.+..+. ...+..|.|+
T Consensus 39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~------g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~ws 109 (194)
T PF08662_consen 39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPN------GNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWS 109 (194)
T ss_pred EEEEEEecCCCccceeeccCCCceEEEEECcC------CCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEEC
Confidence 4444442 2233444433 4567999999999 7776544 467899999997 67777764 4567899999
Q ss_pred CCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCC
Q 000450 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDG 758 (1496)
Q Consensus 679 pdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~ 758 (1496)
|+|++|++++.+ +..|.|.+||+++.+.+.... |. ......+++ ....+++..+... ...|.
T Consensus 110 P~G~~l~~~g~~-----n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsP------dGr~~~ta~t~~r-----~~~dn 171 (194)
T PF08662_consen 110 PDGRFLVLAGFG-----NLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSP------DGRYLATATTSPR-----LRVDN 171 (194)
T ss_pred CCCCEEEEEEcc-----CCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcC------CCCEEEEEEeccc-----eeccc
Confidence 999999998754 222789999999888877764 22 233334542 1222222222111 12378
Q ss_pred cEEeecc
Q 000450 759 TFRQSQI 765 (1496)
Q Consensus 759 ~ir~W~l 765 (1496)
.+++|+.
T Consensus 172 g~~Iw~~ 178 (194)
T PF08662_consen 172 GFKIWSF 178 (194)
T ss_pred cEEEEEe
Confidence 8999985
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.7e-05 Score=89.43 Aligned_cols=117 Identities=18% Similarity=0.239 Sum_probs=92.3
Q ss_pred CCccEEEEEeeccccccCCEEEEE--EcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000450 508 KEKIVSSSMVISESFYAPYAIVYG--FFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1496)
Q Consensus 508 h~~~Vts~~~~s~~~f~P~~lv~G--s~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~ 585 (1496)
|...+.+..+...+. +++.- ...|+|.+ |+ ..+-+++..+..|.+.+-||+|+++
T Consensus 128 n~~gl~AlS~n~~n~----ylAyp~s~t~GdV~l--~d-------------~~nl~~v~~I~aH~~~lAalafs~~---- 184 (391)
T KOG2110|consen 128 NPKGLCALSPNNANC----YLAYPGSTTSGDVVL--FD-------------TINLQPVNTINAHKGPLAALAFSPD---- 184 (391)
T ss_pred CccceEeeccCCCCc----eEEecCCCCCceEEE--EE-------------cccceeeeEEEecCCceeEEEECCC----
Confidence 445566655444443 55543 23688888 33 3344678889999999999999997
Q ss_pred ccCcCCCEEEEEeCCCc-EEEEECCCCceEEEEcccCC--CEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q 000450 586 KGWSFNEVLVSGSMDCS-IRIWDLGSGNLITVMHHHVA--PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1496)
Q Consensus 586 ~~~~~~~~L~SGs~Dgt-V~lWDl~tg~~l~~~~~H~~--~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~ 658 (1496)
|.+||++|..|| |||+++.+|+.+..|+--.. .|.+++|+|+ +++|++.|.-++|.++-++.
T Consensus 185 -----G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d------s~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 185 -----GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD------SQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred -----CCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC------CCeEEEecCCCeEEEEEecc
Confidence 999999999997 56999999999999876543 4789999999 89999999999999998864
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.4e-06 Score=102.29 Aligned_cols=176 Identities=14% Similarity=0.095 Sum_probs=110.2
Q ss_pred CccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcC-CcEEEEEecccccCCCCCCccccCCcc--
Q 000450 485 DTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFS-GEIEVIQFDLFERHNSPGASLKVNSHV-- 561 (1496)
Q Consensus 485 ~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~d-G~I~V~~~~~l~~~d~~~~~~d~~s~~-- 561 (1496)
+.+.+||..... .+.+..|...+.+..+.++.. .+++.+.+ +.-.|+.|+ ..+++
T Consensus 184 ~~i~i~d~dg~~-----~~~lt~~~~~v~~p~wSPDG~----~la~~s~~~~~~~i~i~d-------------l~tg~~~ 241 (429)
T PRK01742 184 YEVRVADYDGFN-----QFIVNRSSQPLMSPAWSPDGS----KLAYVSFENKKSQLVVHD-------------LRSGARK 241 (429)
T ss_pred EEEEEECCCCCC-----ceEeccCCCccccceEcCCCC----EEEEEEecCCCcEEEEEe-------------CCCCceE
Confidence 466777764321 233455666777777444443 77776643 333333354 22232
Q ss_pred eEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEE-eCCCcEEEE--ECCCCceEEEEcccCCCEEEEEECCCCCCCCC
Q 000450 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG-SMDCSIRIW--DLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1496)
Q Consensus 562 ~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SG-s~DgtV~lW--Dl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~ 638 (1496)
.+..+.+|. ..++|+|| ++.|+.+ +.|+.+.|| |+.+++ +..+..+...+....|+||
T Consensus 242 ~l~~~~g~~---~~~~wSPD---------G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpD------ 302 (429)
T PRK01742 242 VVASFRGHN---GAPAFSPD---------GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPD------ 302 (429)
T ss_pred EEecCCCcc---CceeECCC---------CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCC------
Confidence 233344443 46799998 7766655 568876655 666665 4556677777889999999
Q ss_pred CCEEEEEe-CCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 639 SDCFLSVG-EDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 639 g~~l~Sgs-~DgsV~lWdl~~~-~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
|+.++.++ .++...||+++.. .....+ ++.. ....|+|||++|+..+.+ + +.+||+.+|+...
T Consensus 303 G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~--------~-i~~~Dl~~g~~~~ 367 (429)
T PRK01742 303 GQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGD--------N-VVKQDLTSGSTEV 367 (429)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCC--------C-EEEEECCCCCeEE
Confidence 77666554 5788889887532 222223 3433 457899999999887765 4 6669999987653
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00015 Score=88.03 Aligned_cols=103 Identities=12% Similarity=0.080 Sum_probs=74.7
Q ss_pred CcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEE----eCCCcEEEEECCCCcEEEEecCC-CCCcEEE
Q 000450 601 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV----GEDFSVALASLETLRVERMFPGH-PNYPAKV 675 (1496)
Q Consensus 601 gtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sg----s~DgsV~lWdl~~~~~l~~~~gH-~~~V~~V 675 (1496)
..+.+||..+.+.+.++....++ .-+..+|+ ++++... ....+|.++|.++.+.+..+... ...+..+
T Consensus 249 ~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~------s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ 321 (369)
T PF02239_consen 249 DPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPD------SRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHM 321 (369)
T ss_dssp -TTT-STTTBTSEEEEEE-SSSS---EE--TT-------SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEE
T ss_pred CccccchhhcCeEEEEEECCCCc-ceeecCCC------CccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEecc
Confidence 35668999999999999988888 77888998 7777776 45689999999999888887532 2358899
Q ss_pred EEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 676 VWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 676 ~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
.|++||+++.++..+ .++.|.|||.+|.+++..+.
T Consensus 322 ef~~dG~~v~vS~~~------~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 322 EFNPDGKEVWVSVWD------GNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EE-TTSSEEEEEEE--------TTEEEEEETTTTEEEEEEE
T ss_pred EECCCCCEEEEEEec------CCCEEEEEECCCcEEEEEEE
Confidence 999999999887776 22589999999999998887
|
... |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.8e-06 Score=105.39 Aligned_cols=152 Identities=17% Similarity=0.194 Sum_probs=115.1
Q ss_pred cccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC-------ceEEEEcccCCCEEEE
Q 000450 555 LKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-------NLITVMHHHVAPVRQI 627 (1496)
Q Consensus 555 ~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg-------~~l~~~~~H~~~V~~l 627 (1496)
|+. .|..+..+..|...|..++.++.+ +.+++|||.||+|++||+..- +...++....+++.++
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~--------~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~v 1104 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEH--------TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKV 1104 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCC--------CceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEE
Confidence 444 467888899999999999998863 689999999999999998742 2334444456788999
Q ss_pred EECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-------------------cEEEEe-----------------------
Q 000450 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETL-------------------RVERMF----------------------- 665 (1496)
Q Consensus 628 ~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~-------------------~~l~~~----------------------- 665 (1496)
.+.+. ++.+|.++.||.|++.+++-. ..+.+.
T Consensus 1105 t~~~~------~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~ 1178 (1431)
T KOG1240|consen 1105 TMCGN------GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSW 1178 (1431)
T ss_pred EeccC------CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEe
Confidence 98887 899999999999999987641 111000
Q ss_pred -------------cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCCCceeeeeec
Q 000450 666 -------------PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR-GTASHSMFDHFCK 729 (1496)
Q Consensus 666 -------------~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~-gh~a~vi~~~~~~ 729 (1496)
....+.|++++.+|.+.+++.|..- |.+-+||++-+.++.... ++.+.+..+..|+
T Consensus 1179 D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~--------G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1179 DTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSR--------GQLVLWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred cchhhhhHHhhhcCccccceeEEEecCCceEEEEecCC--------ceEEEEEeecCceeecccCcccCCcceEEeec
Confidence 0123568999999999999999988 999999999998876653 4445665555553
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.5e-05 Score=92.00 Aligned_cols=162 Identities=12% Similarity=0.086 Sum_probs=122.1
Q ss_pred ccCCEEEEEEcC--CcEEEEEecccccCCCCCCccccCCcceEEEEecCC--ccEEEEEEecCCCCcccCcCCCEEEEEe
Q 000450 523 YAPYAIVYGFFS--GEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHT--GAVLCLAAHRMVGTAKGWSFNEVLVSGS 598 (1496)
Q Consensus 523 f~P~~lv~Gs~d--G~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~--~~V~~La~spd~~~~~~~~~~~~L~SGs 598 (1496)
-+|+.+++|+.. ..++||+... ..+.|.....+. -.| +=. -.++.+.|-+.. ....|+++.
T Consensus 159 ~~p~Iva~GGke~~n~lkiwdle~------~~qiw~aKNvpn-D~L-~LrVPvW~tdi~Fl~g~-------~~~~fat~T 223 (412)
T KOG3881|consen 159 TDPYIVATGGKENINELKIWDLEQ------SKQIWSAKNVPN-DRL-GLRVPVWITDIRFLEGS-------PNYKFATIT 223 (412)
T ss_pred CCCceEecCchhcccceeeeeccc------ceeeeeccCCCC-ccc-cceeeeeeccceecCCC-------CCceEEEEe
Confidence 356678888887 6677743321 112232211100 000 011 134677786641 257899999
Q ss_pred CCCcEEEEECCCCc-eEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE-ecCCCCCcEEEE
Q 000450 599 MDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM-FPGHPNYPAKVV 676 (1496)
Q Consensus 599 ~DgtV~lWDl~tg~-~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~-~~gH~~~V~~V~ 676 (1496)
.-+.|++||.+.++ ++..|..-..+|.++...|. ++.+.+|..-+.+..+|++.++.+.. +.|-.+.|.+|.
T Consensus 224 ~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~------gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih 297 (412)
T KOG3881|consen 224 RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPS------GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIH 297 (412)
T ss_pred cceeEEEecCcccCcceeEeccccCcceeeeecCC------CcEEEEecccchhheecccCceeeccccCCccCCcceEE
Confidence 99999999999775 66778777889999999998 89999999999999999999998866 888899999999
Q ss_pred EcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 677 WDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 677 ~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
.+|..++|++++-| ..|||+|++|.+++.
T Consensus 298 ~hp~~~~las~GLD--------RyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 298 CHPTHPVLASCGLD--------RYVRIHDIKTRKLLH 326 (412)
T ss_pred EcCCCceEEeeccc--------eeEEEeecccchhhh
Confidence 99999999999999 999999999966653
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.3e-06 Score=98.47 Aligned_cols=156 Identities=17% Similarity=0.245 Sum_probs=116.0
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcc------cCC-----CEEE
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH------HVA-----PVRQ 626 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~------H~~-----~V~~ 626 (1496)
+.|..+..|.-..+.++++..++. ..+|+.|+.||.|..||.++.....++.. |.+ .|++
T Consensus 163 EqGrfL~P~~~~~~~lN~v~in~~---------hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTa 233 (703)
T KOG2321|consen 163 EQGRFLNPFETDSGELNVVSINEE---------HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTA 233 (703)
T ss_pred cccccccccccccccceeeeecCc---------cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceE
Confidence 345566666666789999999997 68999999999999999998765554432 333 3999
Q ss_pred EEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC--CCcEEEEEcCC--CCEEEEEEcCCCCCCCCCCEEE
Q 000450 627 IILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP--NYPAKVVWDCP--RGYIACLCRDHSRTSDAVDVLF 702 (1496)
Q Consensus 627 l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~--~~V~~V~~spd--g~~L~tgs~D~sg~~D~dg~V~ 702 (1496)
+.|+-+ |-.++.|..+|.|.|||++..+++..- .|. -+|..+.|.+. +..+++... ..++
T Consensus 234 l~F~d~------gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l~~~~~~~q~~v~S~Dk---------~~~k 297 (703)
T KOG2321|consen 234 LKFRDD------GLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKLDWQDTDQQNKVVSMDK---------RILK 297 (703)
T ss_pred EEecCC------ceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeeecccccCCCceEEecch---------HHhh
Confidence 999987 789999999999999999998886553 354 47899999765 445555433 6899
Q ss_pred EEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCc
Q 000450 703 IWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNT 745 (1496)
Q Consensus 703 VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~ 745 (1496)
|||-.+|+....+..... ...+| +...+|.++.++.
T Consensus 298 iWd~~~Gk~~asiEpt~~---lND~C----~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 298 IWDECTGKPMASIEPTSD---LNDFC----FVPGSGMFFTANE 333 (703)
T ss_pred hcccccCCceeeccccCC---cCcee----eecCCceEEEecC
Confidence 999999998887765443 23355 2233666655554
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.2e-06 Score=91.05 Aligned_cols=148 Identities=14% Similarity=0.042 Sum_probs=109.7
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.++++-.+|++.+..... .. -+..+.+++|.-..+...|+.. ..+++.+||.|+.+..|
T Consensus 135 ~i~vs~s~G~~~~v~~t~----------~~---le~vq~wk~He~E~Wta~f~~~--------~pnlvytGgDD~~l~~~ 193 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETE----------MV---LEKVQTWKVHEFEAWTAKFSDK--------EPNLVYTGGDDGSLSCW 193 (339)
T ss_pred eEEEEcCCCcEEEEecce----------ee---eeecccccccceeeeeeecccC--------CCceEEecCCCceEEEE
Confidence 677777888888543321 01 1334578899999999999765 37899999999999999
Q ss_pred ECC-CCceEEE-EcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC-CcEEEEecCCCCCcEEEEEcCCCC-
Q 000450 607 DLG-SGNLITV-MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-LRVERMFPGHPNYPAKVVWDCPRG- 682 (1496)
Q Consensus 607 Dl~-tg~~l~~-~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~-~~~l~~~~gH~~~V~~V~~spdg~- 682 (1496)
|++ .++.+.. -+.|+..|.++.-+|.. +.++++|+.|..|++||.++ ++++..-+ -.+.|+.++++|.-.
T Consensus 194 D~R~p~~~i~~n~kvH~~GV~SI~ss~~~-----~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~ 267 (339)
T KOG0280|consen 194 DIRIPKTFIWHNSKVHTSGVVSIYSSPPK-----PTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFH 267 (339)
T ss_pred EecCCcceeeecceeeecceEEEecCCCC-----CceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhh
Confidence 999 4555533 66789999999888763 78999999999999999985 56665543 236799999999543
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000450 683 YIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 683 ~L~tgs~D~sg~~D~dg~V~VWDl~tg 709 (1496)
.|+.+|.- .-.+|-++..+
T Consensus 268 ~lL~~CMh--------~G~ki~~~~~~ 286 (339)
T KOG0280|consen 268 RLLAACMH--------NGAKILDSSDK 286 (339)
T ss_pred HHHHHHHh--------cCceEEEeccc
Confidence 44555654 44677776554
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.4e-05 Score=86.14 Aligned_cols=102 Identities=18% Similarity=0.195 Sum_probs=74.2
Q ss_pred cEEEEEEecCCCCcccCcCCCEEEEEeCC--CcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCC
Q 000450 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMD--CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 649 (1496)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~~L~SGs~D--gtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~Dg 649 (1496)
.+.-++|++| ..++++-... ..+-+||+...++...+ ....+|+...|.|. ...++.+....
T Consensus 320 g~g~lafs~D---------s~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~------~prL~vctg~s 383 (447)
T KOG4497|consen 320 GAGKLAFSCD---------STYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPG------RPRLVVCTGKS 383 (447)
T ss_pred ccceeeecCC---------ceEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEeCCC------CceEEEEcCCc
Confidence 4677899997 6777776432 46789999876654444 45678999999997 34444444445
Q ss_pred cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcC
Q 000450 650 SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRD 690 (1496)
Q Consensus 650 sV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D 690 (1496)
.+.+|.....+++.. ++....|.+++|.-+|.+++-.+.|
T Consensus 384 rLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 384 RLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKD 423 (447)
T ss_pred eEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCC
Confidence 588898776555443 5566789999999999999888877
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.3e-05 Score=86.40 Aligned_cols=104 Identities=19% Similarity=0.381 Sum_probs=83.5
Q ss_pred EEEE-EEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCc-EE
Q 000450 527 AIVY-GFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS-IR 604 (1496)
Q Consensus 527 ~lv~-Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~Dgt-V~ 604 (1496)
.||+ |..-|.|.|..+.. ... + +-..+..|...|.|++.+.+ |.++||+|..|| ||
T Consensus 150 ~LafPg~k~GqvQi~dL~~-----------~~~-~-~p~~I~AH~s~Iacv~Ln~~---------Gt~vATaStkGTLIR 207 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLAS-----------TKP-N-APSIINAHDSDIACVALNLQ---------GTLVATASTKGTLIR 207 (346)
T ss_pred EEEcCCCccceEEEEEhhh-----------cCc-C-CceEEEcccCceeEEEEcCC---------ccEEEEeccCcEEEE
Confidence 3444 45578999965541 111 1 23567899999999999886 899999999997 67
Q ss_pred EEECCCCceEEEEccc--CCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q 000450 605 IWDLGSGNLITVMHHH--VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1496)
Q Consensus 605 lWDl~tg~~l~~~~~H--~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~ 658 (1496)
|||..+|+.+..++-- ...|.+++|+|+ ..++|..|.-|++.++.++.
T Consensus 208 IFdt~~g~~l~E~RRG~d~A~iy~iaFSp~------~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 208 IFDTEDGTLLQELRRGVDRADIYCIAFSPN------SSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEcCCCcEeeeeecCCchheEEEEEeCCC------ccEEEEEcCCCeEEEEEeec
Confidence 9999999999988753 346999999999 89999999999999999875
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.3e-05 Score=92.42 Aligned_cols=163 Identities=12% Similarity=0.042 Sum_probs=104.7
Q ss_pred ccCC--EEEEE-EcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeC
Q 000450 523 YAPY--AIVYG-FFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM 599 (1496)
Q Consensus 523 f~P~--~lv~G-s~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~ 599 (1496)
|+|+ .+++. ..+|...|+.|+ .++++.. .+..+...+....|+|| ++.|+..+.
T Consensus 250 ~SPDG~~La~~~~~~g~~~I~~~d-------------~~tg~~~-~lt~~~~~~~~~~wSPD---------G~~I~f~s~ 306 (429)
T PRK03629 250 FSPDGSKLAFALSKTGSLNLYVMD-------------LASGQIR-QVTDGRSNNTEPTWFPD---------SQNLAYTSD 306 (429)
T ss_pred ECCCCCEEEEEEcCCCCcEEEEEE-------------CCCCCEE-EccCCCCCcCceEECCC---------CCEEEEEeC
Confidence 5555 56654 456765565555 2333433 34444456788999998 777766554
Q ss_pred C-Cc--EEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCC---CcEEEEECCCCcEEEEecCCCCCcE
Q 000450 600 D-CS--IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED---FSVALASLETLRVERMFPGHPNYPA 673 (1496)
Q Consensus 600 D-gt--V~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~D---gsV~lWdl~~~~~l~~~~gH~~~V~ 673 (1496)
+ +. |.++|+.+++. ..+..+........|+|+ |+.++..+.+ ..|.+||+.+++....... ....
T Consensus 307 ~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpD------G~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~--~~~~ 377 (429)
T PRK03629 307 QAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSD------GKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT--FLDE 377 (429)
T ss_pred CCCCceEEEEECCCCCe-EEeecCCCCccCEEECCC------CCEEEEEEccCCCceEEEEECCCCCeEEeCCC--CCCC
Confidence 3 44 44557766654 344444555677889999 8888776543 4588999988875433222 2234
Q ss_pred EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCce
Q 000450 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSM 723 (1496)
Q Consensus 674 ~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi 723 (1496)
...|+|||++|+..+.+ + . ...+++|++ +|...+.+.+|...+.
T Consensus 378 ~p~~SpDG~~i~~~s~~--~--~-~~~l~~~~~-~G~~~~~l~~~~~~~~ 421 (429)
T PRK03629 378 TPSIAPNGTMVIYSSSQ--G--M-GSVLNLVST-DGRFKARLPATDGQVK 421 (429)
T ss_pred CceECCCCCEEEEEEcC--C--C-ceEEEEEEC-CCCCeEECccCCCCcC
Confidence 67899999999998877 1 1 145888888 5666677777765443
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.8e-05 Score=88.45 Aligned_cols=193 Identities=18% Similarity=0.136 Sum_probs=134.0
Q ss_pred ecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccC
Q 000450 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1496)
Q Consensus 479 ~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~ 558 (1496)
...+.+-++++|-..+....-.. ....-+..+++..+..+.. +|++|..+|++.-+.... +.+
T Consensus 40 ~~~s~drtvrv~lkrds~q~wps--I~~~mP~~~~~~~y~~e~~----~L~vg~~ngtvtefs~se-----------dfn 102 (404)
T KOG1409|consen 40 ISVSEDRTVRVWLKRDSGQYWPS--IYHYMPSPCSAMEYVSESR----RLYVGQDNGTVTEFALSE-----------DFN 102 (404)
T ss_pred EEccccceeeeEEeccccccCch--hhhhCCCCceEeeeeccce----EEEEEEecceEEEEEhhh-----------hhh
Confidence 34455677888876654321111 1122245677777655555 899999999998643321 122
Q ss_pred CcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC---------------------------
Q 000450 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG--------------------------- 611 (1496)
Q Consensus 559 s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg--------------------------- 611 (1496)
.....+....|..+|..+.|+.. .+++++.+.|..+..--.+.+
T Consensus 103 km~~~r~~~~h~~~v~~~if~~~---------~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~ 173 (404)
T KOG1409|consen 103 KMTFLKDYLAHQARVSAIVFSLT---------HEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH 173 (404)
T ss_pred hcchhhhhhhhhcceeeEEecCC---------ceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence 22334555668888888877654 567777777755543322221
Q ss_pred --------------ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEecCCCCCcEEEE
Q 000450 612 --------------NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV-ERMFPGHPNYPAKVV 676 (1496)
Q Consensus 612 --------------~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~-l~~~~gH~~~V~~V~ 676 (1496)
.++.++.+|.++++++.|.|. ...+.||+.|..|.+||+-.++- .....+|...|..+.
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~------~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG------QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS 247 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCC------CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhh
Confidence 245678899999999999997 78999999999999999965543 356678999998888
Q ss_pred EcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 677 WDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 677 ~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
.-+.-+.|++++.| |.|-+||+...+.
T Consensus 248 ~~~~t~~l~S~~ed--------g~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 248 YAQHTRQLISCGED--------GGIVVWNMNVKRV 274 (404)
T ss_pred hhhhheeeeeccCC--------CeEEEEeccceee
Confidence 87778889988888 9999999976443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0001 Score=88.18 Aligned_cols=116 Identities=13% Similarity=0.208 Sum_probs=79.2
Q ss_pred EEEEEEecCCCCcccCcCCCEEEEEeC-CCcEEEEECCC--Cc--eEEEEccc------CCCEEEEEECCCCCCCCCCCE
Q 000450 573 VLCLAAHRMVGTAKGWSFNEVLVSGSM-DCSIRIWDLGS--GN--LITVMHHH------VAPVRQIILSPPQTEHPWSDC 641 (1496)
Q Consensus 573 V~~La~spd~~~~~~~~~~~~L~SGs~-DgtV~lWDl~t--g~--~l~~~~~H------~~~V~~l~~sPd~~~~~~g~~ 641 (1496)
...++|+|+ +++++++.. +++|.+||+.. ++ .+..+..+ ......+.++|+ +++
T Consensus 177 p~~~~~~pd---------g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd------g~~ 241 (330)
T PRK11028 177 PRHMVFHPN---------QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD------GRH 241 (330)
T ss_pred CceEEECCC---------CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC------CCE
Confidence 457899997 787777665 89999999973 33 23333221 112335889998 787
Q ss_pred EEEEe-CCCcEEEEECCCCc----EEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC--CCeE
Q 000450 642 FLSVG-EDFSVALASLETLR----VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK--TGAR 711 (1496)
Q Consensus 642 l~Sgs-~DgsV~lWdl~~~~----~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~--tg~~ 711 (1496)
++++. .+++|.+|+++... .+..... ...+..+.|+|||++|++++.. +++|.+|++. +|.+
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~-------~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQK-------SHHISVYEIDGETGLL 310 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEcc-------CCcEEEEEEcCCCCcE
Confidence 77764 47899999996432 2222221 1246689999999999998863 2899999774 5554
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00012 Score=91.25 Aligned_cols=168 Identities=16% Similarity=0.139 Sum_probs=105.5
Q ss_pred cccCCccEEEEEeeccccccCCEEEEEEcC-CcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000450 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFS-GEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1496)
Q Consensus 505 ~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~d-G~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~ 583 (1496)
+..+...+.+..+.++.. .+++.+.+ +.-.|+.|+ ..+++. ..+..+.+...+..|+||
T Consensus 199 lt~~~~~v~~p~wSpDg~----~la~~s~~~~~~~l~~~d-------------l~~g~~-~~l~~~~g~~~~~~~SpD-- 258 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGK----KLAYVSFERGRSAIYVQD-------------LATGQR-ELVASFRGINGAPSFSPD-- 258 (433)
T ss_pred eecCCCccccccCCCCCC----EEEEEecCCCCcEEEEEE-------------CCCCCE-EEeccCCCCccCceECCC--
Confidence 344555666666333333 67776643 333343344 222332 233344445567899998
Q ss_pred CcccCcCCC-EEEEEeCCC--cEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC-CCc--EEEEECC
Q 000450 584 TAKGWSFNE-VLVSGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DFS--VALASLE 657 (1496)
Q Consensus 584 ~~~~~~~~~-~L~SGs~Dg--tV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~-Dgs--V~lWdl~ 657 (1496)
++ ++++.+.++ .|.+||+.+++. ..+..+........|+|| |+.++.++. ++. |.++|+.
T Consensus 259 -------G~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spD------G~~l~f~sd~~g~~~iy~~dl~ 324 (433)
T PRK04922 259 -------GRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPD------GKSIYFTSDRGGRPQIYRVAAS 324 (433)
T ss_pred -------CCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCC------CCEEEEEECCCCCceEEEEECC
Confidence 55 445666665 599999998875 445556555678899999 887776664 444 6666777
Q ss_pred CCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEE
Q 000450 658 TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1496)
Q Consensus 658 ~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~ 712 (1496)
+++..+.. .+.......+|+|||++|+..+.+ ++...|++||+.+++..
T Consensus 325 ~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~~-----~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 325 GGSAERLT-FQGNYNARASVSPDGKKIAMVHGS-----GGQYRIAVMDLSTGSVR 373 (433)
T ss_pred CCCeEEee-cCCCCccCEEECCCCCEEEEEECC-----CCceeEEEEECCCCCeE
Confidence 77654332 233445578999999999887654 11247999999888764
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.5e-06 Score=96.41 Aligned_cols=230 Identities=18% Similarity=0.094 Sum_probs=144.3
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCC-EEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY-AIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~-~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d 556 (1496)
++.++.+..+-+||.....+. ..-..+|...|....|++... + .++..+.||.+++.... .
T Consensus 157 l~SgSDD~~vv~WdW~~~~~~---l~f~SGH~~NvfQaKFiP~s~---d~ti~~~s~dgqvr~s~i~--~---------- 218 (559)
T KOG1334|consen 157 LASGSDDLQVVVWDWVSGSPK---LSFESGHCNNVFQAKFIPFSG---DRTIVTSSRDGQVRVSEIL--E---------- 218 (559)
T ss_pred eeccCccceEEeehhhccCcc---cccccccccchhhhhccCCCC---CcCceeccccCceeeeeec--c----------
Confidence 555666778889998765442 223467877777766444222 2 68888999999984332 1
Q ss_pred cCCcce--EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEc---ccCC---CEEEEE
Q 000450 557 VNSHVS--RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH---HHVA---PVRQII 628 (1496)
Q Consensus 557 ~~s~~~--~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~---~H~~---~V~~l~ 628 (1496)
++.+ ...+..|.++|..++.-|+ ....|.|++.|+.|.-.|++.+.+-..+. .+.. ....++
T Consensus 219 --t~~~e~t~rl~~h~g~vhklav~p~--------sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 219 --TGYVENTKRLAPHEGPVHKLAVEPD--------SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred --ccceecceecccccCccceeeecCC--------CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 1222 2446679999999999987 26789999999999999998765433222 2222 345666
Q ss_pred ECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-------------------------------------------------
Q 000450 629 LSPPQTEHPWSDCFLSVGEDFSVALASLETL------------------------------------------------- 659 (1496)
Q Consensus 629 ~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~------------------------------------------------- 659 (1496)
..|.. ...+++++.|..+++||.+..
T Consensus 289 ~~P~n-----t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF 363 (559)
T KOG1334|consen 289 VDPRN-----TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLF 363 (559)
T ss_pred cCCCC-----ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEe
Confidence 66653 346666666666666665421
Q ss_pred -----------------cEEEE-ecCCCC--CcEEEEE-cCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCC
Q 000450 660 -----------------RVERM-FPGHPN--YPAKVVW-DCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1496)
Q Consensus 660 -----------------~~l~~-~~gH~~--~V~~V~~-spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh 718 (1496)
..+.. +.||.+ .|..|-| -|...|+++|+.= |.|.||+-.+++.++.+.|.
T Consensus 364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC--------GhIFiW~K~t~eii~~MegD 435 (559)
T KOG1334|consen 364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC--------GHIFIWDKKTGEIIRFMEGD 435 (559)
T ss_pred ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCcc--------ceEEEEecchhHHHHHhhcc
Confidence 11111 445544 3444443 4556677666544 99999999999999999987
Q ss_pred CCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEeecc
Q 000450 719 ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 719 ~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l 765 (1496)
...+-++.-.+.+. ...++.+ |.-||+|.-
T Consensus 436 r~VVNCLEpHP~~P------------vLAsSGi-----d~DVKIWTP 465 (559)
T KOG1334|consen 436 RHVVNCLEPHPHLP------------VLASSGI-----DHDVKIWTP 465 (559)
T ss_pred cceEeccCCCCCCc------------hhhccCC-----ccceeeecC
Confidence 75333332222211 1223334 778999963
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00018 Score=89.53 Aligned_cols=159 Identities=14% Similarity=0.056 Sum_probs=100.3
Q ss_pred ccCC--EEE-EEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEe-
Q 000450 523 YAPY--AIV-YGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS- 598 (1496)
Q Consensus 523 f~P~--~lv-~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs- 598 (1496)
|+|+ .++ +.+.+|.-.|+.|+ ..+++ ...+..|.+......|+|| ++.|+..+
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d-------------~~~g~-~~~lt~~~~~~~~~~~spD---------G~~l~f~sd 311 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMD-------------LGSRQ-LTRLTNHFGIDTEPTWAPD---------GKSIYFTSD 311 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEE-------------CCCCC-eEECccCCCCccceEECCC---------CCEEEEEEC
Confidence 5554 554 44566765554455 22333 2345556556677899997 67666555
Q ss_pred CCCc--EEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCC---cEEEEECCCCcEEEEecCCCCCcE
Q 000450 599 MDCS--IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF---SVALASLETLRVERMFPGHPNYPA 673 (1496)
Q Consensus 599 ~Dgt--V~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~Dg---sV~lWdl~~~~~l~~~~gH~~~V~ 673 (1496)
.++. |.++|+.+++... +..+........|+|+ |+.++..+.++ .|.+||+.+++..... +.....
T Consensus 312 ~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpD------G~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt--~~~~~~ 382 (433)
T PRK04922 312 RGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPD------GKKIAMVHGSGGQYRIAVMDLSTGSVRTLT--PGSLDE 382 (433)
T ss_pred CCCCceEEEEECCCCCeEE-eecCCCCccCEEECCC------CCEEEEEECCCCceeEEEEECCCCCeEECC--CCCCCC
Confidence 4444 6677777776433 3333344557899999 88877665433 6999999888765332 222345
Q ss_pred EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCC
Q 000450 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1496)
Q Consensus 674 ~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~ 719 (1496)
...|+|||++|+..+.+ .+.+.|+++++. |...+.+..+.
T Consensus 383 ~p~~spdG~~i~~~s~~-----~g~~~L~~~~~~-g~~~~~l~~~~ 422 (433)
T PRK04922 383 SPSFAPNGSMVLYATRE-----GGRGVLAAVSTD-GRVRQRLVSAD 422 (433)
T ss_pred CceECCCCCEEEEEEec-----CCceEEEEEECC-CCceEEcccCC
Confidence 67999999998887765 122679999985 44455555443
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.5e-06 Score=110.86 Aligned_cols=180 Identities=14% Similarity=0.120 Sum_probs=130.9
Q ss_pred eecccccCccccccccCCCCCCCcccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000450 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1496)
Q Consensus 478 l~~s~~~~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~ 557 (1496)
+.+++.++.++.|+.....+.. .....+ +..|+.+.+...+. ....+-.||.+.+ |+ .
T Consensus 2223 Yltgs~dgsv~~~~w~~~~~v~--~~rt~g-~s~vtr~~f~~qGn----k~~i~d~dg~l~l--~q-------------~ 2280 (2439)
T KOG1064|consen 2223 YLTGSQDGSVRMFEWGHGQQVV--CFRTAG-NSRVTRSRFNHQGN----KFGIVDGDGDLSL--WQ-------------A 2280 (2439)
T ss_pred EEecCCCceEEEEeccCCCeEE--EeeccC-cchhhhhhhcccCC----ceeeeccCCceee--cc-------------c
Confidence 4566778888888876543321 111122 26677776555554 6777777888887 55 1
Q ss_pred CCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEE---eCCCcEEEEECCCC---ceEEEEcccCCCEEEEEECC
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG---SMDCSIRIWDLGSG---NLITVMHHHVAPVRQIILSP 631 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SG---s~DgtV~lWDl~tg---~~l~~~~~H~~~V~~l~~sP 631 (1496)
+.++....+.|......+.|- +..++++ +.++.+.+||..-. .+++ +.|.+.++++++-|
T Consensus 2281 -~pk~~~s~qchnk~~~Df~Fi-----------~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2281 -SPKPYTSWQCHNKALSDFRFI-----------GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP 2346 (2439)
T ss_pred -CCcceeccccCCccccceeee-----------ehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC
Confidence 135666677888888888875 3445555 36789999996532 2445 78999999999999
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 632 PQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 632 d~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
. .+.|+|||.+|.|++||++..+.++.++. +. ...++++|+.. |.++||++....+
T Consensus 2347 ~------~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~--------g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2347 K------HQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSE--------GNIKIWRLSEFGL 2402 (2439)
T ss_pred c------ceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcc--------cceEEEEccccch
Confidence 8 89999999999999999998887777653 55 56789998888 9999999988777
Q ss_pred EEEEeC
Q 000450 712 ERVLRG 717 (1496)
Q Consensus 712 ~~~l~g 717 (1496)
+.++.+
T Consensus 2403 l~~~p~ 2408 (2439)
T KOG1064|consen 2403 LHTFPS 2408 (2439)
T ss_pred hhcCch
Confidence 776654
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00016 Score=90.02 Aligned_cols=131 Identities=11% Similarity=0.112 Sum_probs=96.5
Q ss_pred eEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeC---CCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCC
Q 000450 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM---DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1496)
Q Consensus 562 ~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~---DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~ 638 (1496)
..+.+..|...+.+..|+|| ++.|+..+. +..|.+||+.+++.. .+..+.+.+....|+||
T Consensus 193 ~~~~lt~~~~~v~~p~wSpD---------G~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPD------ 256 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFSPN---------RQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPD------ 256 (435)
T ss_pred CcEEEecCCCCeEeeEECCC---------CCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCC------
Confidence 34556778889999999998 777776653 468999999988753 45556677888999999
Q ss_pred CCEE-EEEeCCCc--EEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 639 SDCF-LSVGEDFS--VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 639 g~~l-~Sgs~Dgs--V~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
|+.+ ++.+.|+. |.+||+.+++.. .+..+........|+|||++|+..+.. +++..|++||+.+++..+.
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~-----~g~~~Iy~~d~~g~~~~~l 329 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDR-----SGSPQLYVMNADGSNPRRI 329 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECC-----CCCCeEEEEECCCCCeEEe
Confidence 7655 46666665 777798887664 455566667789999999999877643 1225799999987765443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00026 Score=87.97 Aligned_cols=168 Identities=14% Similarity=0.115 Sum_probs=103.4
Q ss_pred ccCCccEEEEEeeccccccCCEEEEEEc-CCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000450 506 VHKEKIVSSSMVISESFYAPYAIVYGFF-SGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1496)
Q Consensus 506 ~~h~~~Vts~~~~s~~~f~P~~lv~Gs~-dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~ 584 (1496)
..+...+.+..+.++.. .+++.+. ++.-.|+.|+ ..+++.. .+....+.+.+.+|+||
T Consensus 192 ~~~~~~v~~p~wSPDG~----~la~~s~~~~~~~I~~~d-------------l~~g~~~-~l~~~~g~~~~~~~SPD--- 250 (427)
T PRK02889 192 LSSPEPIISPAWSPDGT----KLAYVSFESKKPVVYVHD-------------LATGRRR-VVANFKGSNSAPAWSPD--- 250 (427)
T ss_pred ccCCCCcccceEcCCCC----EEEEEEccCCCcEEEEEE-------------CCCCCEE-EeecCCCCccceEECCC---
Confidence 34556666666333333 6777664 3433444455 3334332 23334455678899998
Q ss_pred cccCcCCCEE-EEEeCCCcEEEEEC--CCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC-CCcEEEEEC--CC
Q 000450 585 AKGWSFNEVL-VSGSMDCSIRIWDL--GSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DFSVALASL--ET 658 (1496)
Q Consensus 585 ~~~~~~~~~L-~SGs~DgtV~lWDl--~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~-DgsV~lWdl--~~ 658 (1496)
++.| ++.+.|+...+|.+ ..+. +..+..+.+.+....|+|| |+.++..+. ++...+|.+ .+
T Consensus 251 ------G~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpD------G~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 251 ------GRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPD------GRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred ------CCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCC------CCEEEEEecCCCCcEEEEEECCC
Confidence 5555 56778887666654 4444 5566666666678889999 887776554 456666654 45
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 659 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 659 ~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
++..+.. .+........|+|||++|+..+.+ +++..|++||+.+++...
T Consensus 318 g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~s~~-----~g~~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 318 GAAQRVT-FTGSYNTSPRISPDGKLLAYISRV-----GGAFKLYVQDLATGQVTA 366 (427)
T ss_pred CceEEEe-cCCCCcCceEECCCCCEEEEEEcc-----CCcEEEEEEECCCCCeEE
Confidence 5443322 222334567899999999877655 111479999999887543
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00013 Score=87.52 Aligned_cols=107 Identities=11% Similarity=0.093 Sum_probs=88.8
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe------cC
Q 000450 594 LVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF------PG 667 (1496)
Q Consensus 594 L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~------~g 667 (1496)
|..++....|.=.+++.|.-+..|....+.+++|.+++. ..+|++|+.||.|-.||.++...+.++ ..
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~------hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s 221 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE------HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNS 221 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCc------cceEEecccCceEEEecchhhhhheeeecccccCC
Confidence 333444456888999999999999999999999999998 789999999999999999876554443 23
Q ss_pred CCC-----CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 668 HPN-----YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 668 H~~-----~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
|.+ .|+++.|+.+|-.+++|..+ |.|+|||+++.+.+.+
T Consensus 222 ~pg~~~~~svTal~F~d~gL~~aVGts~--------G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 222 HPGGDAAPSVTALKFRDDGLHVAVGTST--------GSVLIYDLRASKPLLV 265 (703)
T ss_pred CccccccCcceEEEecCCceeEEeeccC--------CcEEEEEcccCCceee
Confidence 443 48999999999999999998 9999999999887654
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00024 Score=88.62 Aligned_cols=166 Identities=14% Similarity=0.082 Sum_probs=110.0
Q ss_pred cccCCccEEEEEeeccccccCCEEEEEEc-CCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000450 505 FVHKEKIVSSSMVISESFYAPYAIVYGFF-SGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1496)
Q Consensus 505 ~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~-dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~ 583 (1496)
+..|...+.+..+.++.. .|++.+. +|.-.|+.|+ ..+++. ..+..+.+.+.+.+|+||
T Consensus 197 lt~~~~~v~~p~wSpDG~----~lay~s~~~g~~~i~~~d-------------l~~g~~-~~l~~~~g~~~~~~~SPD-- 256 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQ----EITYMSYANGRPRVYLLD-------------LETGQR-ELVGNFPGMTFAPRFSPD-- 256 (435)
T ss_pred EecCCCCeEeeEECCCCC----EEEEEEecCCCCEEEEEE-------------CCCCcE-EEeecCCCcccCcEECCC--
Confidence 455666777777444443 7777653 3444444455 333333 345566777888999998
Q ss_pred CcccCcCCCE-EEEEeCCCc--EEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC-C--CcEEEEECC
Q 000450 584 TAKGWSFNEV-LVSGSMDCS--IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-D--FSVALASLE 657 (1496)
Q Consensus 584 ~~~~~~~~~~-L~SGs~Dgt--V~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~-D--gsV~lWdl~ 657 (1496)
++. +++.+.|+. |.+||+.+++. ..+..+.+......|+|| |+.++..+. + ..|.+||+.
T Consensus 257 -------G~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spD------G~~i~f~s~~~g~~~Iy~~d~~ 322 (435)
T PRK05137 257 -------GRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPD------GSQIVFESDRSGSPQLYVMNAD 322 (435)
T ss_pred -------CCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCC------CCEEEEEECCCCCCeEEEEECC
Confidence 554 457676665 77789987765 456666666778899999 887776663 3 368888987
Q ss_pred CCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 658 TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 658 ~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
+++..+.. .+...+....|+|||++|+....+ .++..|++||+.++.
T Consensus 323 g~~~~~lt-~~~~~~~~~~~SpdG~~ia~~~~~-----~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 323 GSNPRRIS-FGGGRYSTPVWSPRGDLIAFTKQG-----GGQFSIGVMKPDGSG 369 (435)
T ss_pred CCCeEEee-cCCCcccCeEECCCCCEEEEEEcC-----CCceEEEEEECCCCc
Confidence 76654433 334556678999999999887654 112479999986654
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0003 Score=87.44 Aligned_cols=167 Identities=10% Similarity=0.031 Sum_probs=102.6
Q ss_pred ccCCccEEEEEeeccccccCCEEEEEE-cCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCC
Q 000450 506 VHKEKIVSSSMVISESFYAPYAIVYGF-FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1496)
Q Consensus 506 ~~h~~~Vts~~~~s~~~f~P~~lv~Gs-~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~ 584 (1496)
..+...+.+..+.++.. .+++.+ .+|.-.++.|+ ..+++.. .+....+.+..+.|+||
T Consensus 195 t~~~~~~~~p~wSPDG~----~la~~s~~~g~~~i~i~d-------------l~~G~~~-~l~~~~~~~~~~~~SPD--- 253 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGS----KLAYVTFESGRSALVIQT-------------LANGAVR-QVASFPRHNGAPAFSPD--- 253 (429)
T ss_pred ecCCCceeeeEEcCCCC----EEEEEEecCCCcEEEEEE-------------CCCCCeE-EccCCCCCcCCeEECCC---
Confidence 33455666766444443 676654 33443443344 2223322 22222233456899998
Q ss_pred cccCcCCCEEE-EEeCCC--cEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCC-CcEEE--EECCC
Q 000450 585 AKGWSFNEVLV-SGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED-FSVAL--ASLET 658 (1496)
Q Consensus 585 ~~~~~~~~~L~-SGs~Dg--tV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~D-gsV~l--Wdl~~ 658 (1496)
++.|+ +.+.++ .|.+||+.+++... +..+...+....|+|+ |+.|+.++.+ +...| +|+.+
T Consensus 254 ------G~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPD------G~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 254 ------GSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPD------SQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred ------CCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCC------CCEEEEEeCCCCCceEEEEECCC
Confidence 66555 445455 58899999887654 4444556788999999 8888777654 44444 46776
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEE
Q 000450 659 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1496)
Q Consensus 659 ~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~ 712 (1496)
++.. .+..+........|+|||++|+..+.+ ++...|++||+.+++..
T Consensus 321 g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~-----~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 321 GAPQ-RITWEGSQNQDADVSSDGKFMVMVSSN-----GGQQHIAKQDLATGGVQ 368 (429)
T ss_pred CCeE-EeecCCCCccCEEECCCCCEEEEEEcc-----CCCceEEEEECCCCCeE
Confidence 6553 333344456678999999999887654 12257999999988753
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00012 Score=87.72 Aligned_cols=115 Identities=15% Similarity=0.154 Sum_probs=79.7
Q ss_pred cEEEEEEecCCCCcccCcCCCEE-EEEeCCCcEEEEECCCCceEE-------EEcccCCCEEEEEECCCCCCCCCCCEEE
Q 000450 572 AVLCLAAHRMVGTAKGWSFNEVL-VSGSMDCSIRIWDLGSGNLIT-------VMHHHVAPVRQIILSPPQTEHPWSDCFL 643 (1496)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~~L-~SGs~DgtV~lWDl~tg~~l~-------~~~~H~~~V~~l~~sPd~~~~~~g~~l~ 643 (1496)
...+++++|+ ++++ ++...+++|.+||+.+...+. .... ......+.|+|+ +++++
T Consensus 127 ~~~~~~~~p~---------g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pd------g~~ly 190 (330)
T PRK11028 127 GCHSANIDPD---------NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPN------QQYAY 190 (330)
T ss_pred cccEeEeCCC---------CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCC------CCEEE
Confidence 3567788997 5555 666677999999998633221 1111 234578999999 88887
Q ss_pred EEeC-CCcEEEEECCC--C--cEEEEecCC------CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000450 644 SVGE-DFSVALASLET--L--RVERMFPGH------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 644 Sgs~-DgsV~lWdl~~--~--~~l~~~~gH------~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg 709 (1496)
++.. +++|.+|+++. + +.+..+..+ ......+.++|+++++++++.. +++|.+|++.+.
T Consensus 191 v~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~-------~~~I~v~~i~~~ 260 (330)
T PRK11028 191 CVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT-------ASLISVFSVSED 260 (330)
T ss_pred EEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC-------CCeEEEEEEeCC
Confidence 7766 99999999973 3 334443322 1234468999999999998763 279999999653
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.8e-05 Score=88.38 Aligned_cols=102 Identities=26% Similarity=0.441 Sum_probs=81.7
Q ss_pred EEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEEC
Q 000450 529 VYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDL 608 (1496)
Q Consensus 529 v~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl 608 (1496)
..|-..|.|.+.+.. ...-.++.++.+|.+.++++.|.+. ..+|.||..|..|.+||+
T Consensus 169 fvGd~~gqvt~lr~~-------------~~~~~~i~~~~~h~~~~~~l~Wd~~---------~~~LfSg~~d~~vi~wdi 226 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLE-------------QNGCQLITTFNGHTGEVTCLKWDPG---------QRLLFSGASDHSVIMWDI 226 (404)
T ss_pred EecccccceEEEEEe-------------ecCCceEEEEcCcccceEEEEEcCC---------CcEEEeccccCceEEEec
Confidence 345556777764443 2233567889999999999999986 789999999999999999
Q ss_pred CCCc-eEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q 000450 609 GSGN-LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1496)
Q Consensus 609 ~tg~-~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~ 658 (1496)
--++ ....+.+|.+.|..+...+. -+.+.|++.|+.|.+||.+.
T Consensus 227 gg~~g~~~el~gh~~kV~~l~~~~~------t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 227 GGRKGTAYELQGHNDKVQALSYAQH------TRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred cCCcceeeeeccchhhhhhhhhhhh------heeeeeccCCCeEEEEeccc
Confidence 6544 34677889999998887766 67899999999999999863
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0056 Score=74.32 Aligned_cols=122 Identities=16% Similarity=0.209 Sum_probs=91.8
Q ss_pred CccEEEEEEecCCCCcccCcCCCE--EEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC
Q 000450 570 TGAVLCLAAHRMVGTAKGWSFNEV--LVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1496)
Q Consensus 570 ~~~V~~La~spd~~~~~~~~~~~~--L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~ 647 (1496)
.++|.++.|+|+ ++- ++-|-+--+|.++|++ ++++..| -.++-+++.|+|. |++++-+|=
T Consensus 270 ~GPVhdv~W~~s---------~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~------g~ii~lAGF 331 (566)
T KOG2315|consen 270 EGPVHDVTWSPS---------GREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPH------GNIILLAGF 331 (566)
T ss_pred CCCceEEEECCC---------CCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCC------CCEEEEeec
Confidence 689999999997 443 3445677899999985 6777666 3678899999999 898887764
Q ss_pred ---CCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 648 ---DFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 648 ---DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
-|.+-+||+.+.+++..+..- .-+-+.|+|||.+++|+..- .--.-|+.++||+. +|.++..
T Consensus 332 GNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTa--PRlrvdNg~Kiwhy-tG~~l~~ 396 (566)
T KOG2315|consen 332 GNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTA--PRLRVDNGIKIWHY-TGSLLHE 396 (566)
T ss_pred CCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEecc--ccEEecCCeEEEEe-cCceeeh
Confidence 489999999998888877643 34568999999999988741 11112278999997 6666544
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00024 Score=88.35 Aligned_cols=160 Identities=11% Similarity=0.040 Sum_probs=101.8
Q ss_pred ccCC--EEEE-EEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEe-
Q 000450 523 YAPY--AIVY-GFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS- 598 (1496)
Q Consensus 523 f~P~--~lv~-Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs- 598 (1496)
|+|+ .++. .+.+|...||.++. .++. ...+..|.+.+....|+|| ++.|+..+
T Consensus 247 ~SPDG~~la~~~~~~g~~~Iy~~d~-------------~~~~-~~~lt~~~~~~~~~~wSpD---------G~~l~f~s~ 303 (427)
T PRK02889 247 WSPDGRTLAVALSRDGNSQIYTVNA-------------DGSG-LRRLTQSSGIDTEPFFSPD---------GRSIYFTSD 303 (427)
T ss_pred ECCCCCEEEEEEccCCCceEEEEEC-------------CCCC-cEECCCCCCCCcCeEEcCC---------CCEEEEEec
Confidence 5555 5654 56788888866652 1222 3345555556677889998 67666544
Q ss_pred CCCcEEEEEC--CCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCC---cEEEEECCCCcEEEEecCCCCCcE
Q 000450 599 MDCSIRIWDL--GSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF---SVALASLETLRVERMFPGHPNYPA 673 (1496)
Q Consensus 599 ~DgtV~lWDl--~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~Dg---sV~lWdl~~~~~l~~~~gH~~~V~ 673 (1496)
.++...+|.+ .+++.. .+..+........|+|+ |+.++..+.++ .|.+||+.+++......+ ....
T Consensus 304 ~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpD------G~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~ 374 (427)
T PRK02889 304 RGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPD------GKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDE 374 (427)
T ss_pred CCCCcEEEEEECCCCceE-EEecCCCCcCceEECCC------CCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCcc
Confidence 4566666654 445432 22223334456789999 88888776654 699999998876543332 2346
Q ss_pred EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCC
Q 000450 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 720 (1496)
Q Consensus 674 ~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a 720 (1496)
...|+|||++|+..+.+ .+...+++-++ +|...+.+..+.+
T Consensus 375 ~p~~spdg~~l~~~~~~-----~g~~~l~~~~~-~g~~~~~l~~~~g 415 (427)
T PRK02889 375 SPSFAPNGRYILYATQQ-----GGRSVLAAVSS-DGRIKQRLSVQGG 415 (427)
T ss_pred CceECCCCCEEEEEEec-----CCCEEEEEEEC-CCCceEEeecCCC
Confidence 78999999999988876 11245777777 5666666655443
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.1e-05 Score=95.09 Aligned_cols=180 Identities=12% Similarity=0.134 Sum_probs=130.3
Q ss_pred ccccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecC
Q 000450 502 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 581 (1496)
Q Consensus 502 ~~~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd 581 (1496)
.+.+.+|...|.+++-++... .+++++.|.++++|... ..+| ...+..+..++..|+.+|..+-|-.+
T Consensus 728 L~nf~GH~~~iRai~AidNEN----SFiSASkDKTVKLWSik--~EgD------~~~tsaCQfTY~aHkk~i~~igfL~~ 795 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNEN----SFISASKDKTVKLWSIK--PEGD------EIGTSACQFTYQAHKKPIHDIGFLAD 795 (1034)
T ss_pred eecccCcHHHhHHHHhccccc----ceeeccCCceEEEEEec--cccC------ccccceeeeEhhhccCcccceeeeec
Confidence 356789999999887666554 79999999999995543 2221 23455688889999999999999876
Q ss_pred CCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcc--cCCCEEEEEECCCCCCCCCCCEEEEE-eCCCcEEEEECCC
Q 000450 582 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--HVAPVRQIILSPPQTEHPWSDCFLSV-GEDFSVALASLET 658 (1496)
Q Consensus 582 ~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~--H~~~V~~l~~sPd~~~~~~g~~l~Sg-s~DgsV~lWdl~~ 658 (1496)
.+.++|+ |+-|.+||..-|+++..+.. ..+.+..+..-|+. +...+..| +...+|+++|.+.
T Consensus 796 ---------lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv----~~~iliAgcsaeSTVKl~DaRs 860 (1034)
T KOG4190|consen 796 ---------LRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV----DRHILIAGCSAESTVKLFDARS 860 (1034)
T ss_pred ---------cceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccC----cchheeeeccchhhheeeeccc
Confidence 5677765 89999999998887764432 11223333333331 13444444 7789999999998
Q ss_pred CcEEEEe-----cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 659 LRVERMF-----PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 659 ~~~l~~~-----~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
++-...+ ++..+-+.+++..|.|++++++-.+ |+|.+-|.++|+.+...+
T Consensus 861 ce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSn--------Gci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 861 CEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSN--------GCIAILDARNGKVINSWR 915 (1034)
T ss_pred ccceeeEEeccCCCCchheeEEEeccCcchhhHHhcC--------CcEEEEecCCCceeccCC
Confidence 7644333 4455668999999999999998887 999999999999776544
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00023 Score=82.54 Aligned_cols=192 Identities=15% Similarity=0.085 Sum_probs=134.1
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCC--CcEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD--CSIR 604 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~D--gtV~ 604 (1496)
.|+++-.+|.+.+|.-. . .+..+.+ ...+..| ..+..+.-++. ...++++||.. ..+.
T Consensus 117 ~Litc~~sG~l~~~~~k---~-------~d~hss~-l~~la~g-~g~~~~r~~~~--------~p~Iva~GGke~~n~lk 176 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDK---S-------GDLHSSK-LIKLATG-PGLYDVRQTDT--------DPYIVATGGKENINELK 176 (412)
T ss_pred EEEEEecCCcEEEEecc---C-------Ccccccc-ceeeecC-CceeeeccCCC--------CCceEecCchhccccee
Confidence 78888999999994322 0 1111112 2223222 33444444443 26788889988 8899
Q ss_pred EEECCCCceEEEEcccC---------CCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEE
Q 000450 605 IWDLGSGNLITVMHHHV---------APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAK 674 (1496)
Q Consensus 605 lWDl~tg~~l~~~~~H~---------~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~-~~l~~~~gH~~~V~~ 674 (1496)
+||++..+.+..-+.-. -.++.+.|-|.. ....|+++..-+.|++||.+.+ +++..|.--..++++
T Consensus 177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~----~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~ 252 (412)
T KOG3881|consen 177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGS----PNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISS 252 (412)
T ss_pred eeecccceeeeeccCCCCccccceeeeeeccceecCCC----CCceEEEEecceeEEEecCcccCcceeEeccccCccee
Confidence 99999875443322110 124577776641 1468999999999999999865 578888888889999
Q ss_pred EEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE-EeCCCCCceeeeeecccccccccceEEcCCcccccccee
Q 000450 675 VVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV-LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLP 753 (1496)
Q Consensus 675 V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~-l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~ 753 (1496)
+...|+++++++|..- |.+..+|++++++... +.|.++.+..+|..+. +....+..+
T Consensus 253 ~~l~p~gn~Iy~gn~~--------g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~------------~~~las~GL-- 310 (412)
T KOG3881|consen 253 TGLTPSGNFIYTGNTK--------GQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPT------------HPVLASCGL-- 310 (412)
T ss_pred eeecCCCcEEEEeccc--------chhheecccCceeeccccCCccCCcceEEEcCC------------CceEEeecc--
Confidence 9999999999999887 9999999999998876 8888877777755521 234445555
Q ss_pred eccCCcEEeecccc
Q 000450 754 IHEDGTFRQSQIQN 767 (1496)
Q Consensus 754 ~~~D~~ir~W~l~~ 767 (1496)
|.-+|+.++++
T Consensus 311 ---DRyvRIhD~kt 321 (412)
T KOG3881|consen 311 ---DRYVRIHDIKT 321 (412)
T ss_pred ---ceeEEEeeccc
Confidence 88899987643
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.6e-05 Score=87.96 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=86.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe-cCCCC
Q 000450 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF-PGHPN 670 (1496)
Q Consensus 592 ~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~-~gH~~ 670 (1496)
......+.+..+.+|....+.+. .+-+|...++.|+|+|| ++.++++..|..|++-....--.+..| .||..
T Consensus 123 ~v~dkagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D------~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e 195 (390)
T KOG3914|consen 123 LVADKAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPD------DQFIITADRDEKIRVSRYPATFVIESFCLGHKE 195 (390)
T ss_pred EEEeecCCceeeeeecccccCcc-hhhhhhhhhheeeecCC------CCEEEEecCCceEEEEecCcccchhhhccccHh
Confidence 34445566677888887765544 44589999999999999 899999999999999887765555554 58999
Q ss_pred CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 671 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 671 ~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
.|..++.-++. .|++++.| ++|++||+++|++++++.
T Consensus 196 FVS~isl~~~~-~LlS~sGD--------~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 196 FVSTISLTDNY-LLLSGSGD--------KTLRLWDITSGKLLDTCD 232 (390)
T ss_pred heeeeeeccCc-eeeecCCC--------CcEEEEecccCCcccccc
Confidence 99999997764 47777666 999999999999886653
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.3e-05 Score=89.07 Aligned_cols=127 Identities=16% Similarity=0.169 Sum_probs=103.3
Q ss_pred CCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC-----ceEEEEcccCCCEEEEEECC-CCCCCCCCCEE
Q 000450 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-----NLITVMHHHVAPVRQIILSP-PQTEHPWSDCF 642 (1496)
Q Consensus 569 H~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg-----~~l~~~~~H~~~V~~l~~sP-d~~~~~~g~~l 642 (1496)
-++.|.++.|+.. +.+++.|...|.|...|++.+ .+.+.+ -|...|+++..-. + ++++
T Consensus 251 sksDVfAlQf~~s---------~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s------~q~L 314 (425)
T KOG2695|consen 251 SKSDVFALQFAGS---------DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFS------QQKL 314 (425)
T ss_pred cchhHHHHHhccc---------CCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccc------cceE
Confidence 4677889998875 789999999999999999865 344555 4788888887655 3 7899
Q ss_pred EEEeCCCcEEEEECCCCcE---EEEecCCCCCcE--EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 643 LSVGEDFSVALASLETLRV---ERMFPGHPNYPA--KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 643 ~Sgs~DgsV~lWdl~~~~~---l~~~~gH~~~V~--~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
++.+-+|+|++||++--++ ++++.||.+.-. -+...+....+++++.| ...|||.++.|++++++.-
T Consensus 315 maS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD--------cytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 315 MASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD--------CYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe--------eEEEEEecccCceeeccCC
Confidence 9999999999999987777 999999977432 34456788899988888 9999999999999988765
Q ss_pred CC
Q 000450 718 TA 719 (1496)
Q Consensus 718 h~ 719 (1496)
.-
T Consensus 387 ~~ 388 (425)
T KOG2695|consen 387 PY 388 (425)
T ss_pred CC
Confidence 43
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0011 Score=82.30 Aligned_cols=107 Identities=18% Similarity=0.223 Sum_probs=84.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC----------CCcEEEEECCCCcE
Q 000450 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE----------DFSVALASLETLRV 661 (1496)
Q Consensus 592 ~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~----------DgsV~lWdl~~~~~ 661 (1496)
.+++.|...|+|-+.|+.++..-..|..|++.|.++.|--. ..|+|-+. -+.+.+-|+++|..
T Consensus 438 pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~-------sslvSfsys~~n~~sg~vrN~l~vtdLrtGls 510 (1062)
T KOG1912|consen 438 PLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGN-------SSLVSFSYSHVNSASGGVRNDLVVTDLRTGLS 510 (1062)
T ss_pred eeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccc-------eeEEEeeeccccccccceeeeEEEEEcccccc
Confidence 47889999999999999999999999999999999999654 24444332 34566889998865
Q ss_pred E--EEecC-CCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 662 E--RMFPG-HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 662 l--~~~~g-H~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
. +.+++ ...+|..+..+..++||+..-.| .-+.+||+++-++++
T Consensus 511 k~fR~l~~~despI~~irvS~~~~yLai~Fr~--------~plEiwd~kt~~~lr 557 (1062)
T KOG1912|consen 511 KRFRGLQKPDESPIRAIRVSSSGRYLAILFRR--------EPLEIWDLKTLRMLR 557 (1062)
T ss_pred cccccCCCCCcCcceeeeecccCceEEEEecc--------cchHHHhhccchHHH
Confidence 3 22222 34589999999999999999999 899999998866543
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.3e-05 Score=61.67 Aligned_cols=38 Identities=34% Similarity=0.563 Sum_probs=36.0
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEE
Q 000450 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1496)
Q Consensus 561 ~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWD 607 (1496)
+++.++.+|.+.|++++|+|+ +.+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~---------~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPD---------GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETT---------SSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecc---------cccceeeCCCCEEEEEC
Confidence 578899999999999999997 89999999999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0012 Score=81.97 Aligned_cols=133 Identities=14% Similarity=0.087 Sum_probs=88.6
Q ss_pred eEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEe-CCCcEEEEE--CCC-CceEEEEcccCCCEEEEEECCCCCCCC
Q 000450 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-MDCSIRIWD--LGS-GNLITVMHHHVAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 562 ~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs-~DgtV~lWD--l~t-g~~l~~~~~H~~~V~~l~~sPd~~~~~ 637 (1496)
..+...++.+......|+|| ++.|+..+ .++...+|. +.. +.....+..+.+.+....|+||
T Consensus 272 ~~~lt~~~~~~~~~p~wSPD---------G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPD----- 337 (428)
T PRK01029 272 PRRLLNEAFGTQGNPSFSPD---------GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPD----- 337 (428)
T ss_pred ceEeecCCCCCcCCeEECCC---------CCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCC-----
Confidence 33334343344567899998 67655444 566655654 432 3334555555567788999999
Q ss_pred CCCEEEEEeCC---CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 638 WSDCFLSVGED---FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 638 ~g~~l~Sgs~D---gsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
|+.|+..+.+ ..|.+||+.+++...... ....+....|+|||++|+....+ ++...|++||+.+++..+.
T Consensus 338 -G~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~-----~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 338 -GKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGN-----SNESELYLISLITKKTRKI 410 (428)
T ss_pred -CCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECC-----CCCceEEEEECCCCCEEEe
Confidence 8877766543 468999999888754433 33456789999999998865543 2236899999988876544
Q ss_pred E
Q 000450 715 L 715 (1496)
Q Consensus 715 l 715 (1496)
.
T Consensus 411 t 411 (428)
T PRK01029 411 V 411 (428)
T ss_pred e
Confidence 4
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=4.8e-05 Score=100.75 Aligned_cols=147 Identities=10% Similarity=0.145 Sum_probs=115.7
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEE--ecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF--LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR 604 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l--~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~ 604 (1496)
+.++|+.||.+++|.|.. +..+.++ .|. ..|+.+.|+.. |..+..+..||.+.
T Consensus 2222 ~Yltgs~dgsv~~~~w~~---------------~~~v~~~rt~g~-s~vtr~~f~~q---------Gnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGH---------------GQQVVCFRTAGN-SRVTRSRFNHQ---------GNKFGIVDGDGDLS 2276 (2439)
T ss_pred eEEecCCCceEEEEeccC---------------CCeEEEeeccCc-chhhhhhhccc---------CCceeeeccCCcee
Confidence 778999999999988861 2223333 233 78999999876 78888888999999
Q ss_pred EEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEe---CCCcEEEEECCC--C-cEEEEecCCCCCcEEEEEc
Q 000450 605 IWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG---EDFSVALASLET--L-RVERMFPGHPNYPAKVVWD 678 (1496)
Q Consensus 605 lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs---~DgsV~lWdl~~--~-~~l~~~~gH~~~V~~V~~s 678 (1496)
+|.+. .+.....+.|......+.|-- ..+++.+ .++.+.+||..- + .++. ..|...++++++-
T Consensus 2277 l~q~~-pk~~~s~qchnk~~~Df~Fi~--------s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~ 2345 (2439)
T KOG1064|consen 2277 LWQAS-PKPYTSWQCHNKALSDFRFIG--------SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYA 2345 (2439)
T ss_pred ecccC-CcceeccccCCccccceeeee--------hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEc
Confidence 99986 677788888988888888753 3556553 578999999642 2 3444 6799999999999
Q ss_pred CCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 679 pdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
|....|++|+.+ |.|++||++..++.+++..
T Consensus 2346 P~~qllisggr~--------G~v~l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2346 PKHQLLISGGRK--------GEVCLFDIRQRQLRHTFQA 2376 (2439)
T ss_pred CcceEEEecCCc--------CcEEEeehHHHHHHHHhhh
Confidence 999999999999 9999999998887766654
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.84 E-value=4e-05 Score=61.22 Aligned_cols=39 Identities=23% Similarity=0.527 Sum_probs=37.0
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000450 659 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 659 ~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWD 705 (1496)
+++++.+.+|...|++++|+|++.+|++++.| ++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D--------~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSD--------GTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETT--------SEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCC--------CEEEEEC
Confidence 46889999999999999999999999999999 9999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00015 Score=90.58 Aligned_cols=176 Identities=16% Similarity=0.130 Sum_probs=124.8
Q ss_pred ccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCc
Q 000450 523 YAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS 602 (1496)
Q Consensus 523 f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~Dgt 602 (1496)
|+-..++.|..+|.+.+...+ +.+ .+...|+.. .. .|.+++|||.||+
T Consensus 47 v~~~~~~~GtH~g~v~~~~~~----------------~~~-~~~~~~s~~------~~---------~Gey~asCS~DGk 94 (846)
T KOG2066|consen 47 VHDKFFALGTHRGAVYLTTCQ----------------GNP-KTNFDHSSS------IL---------EGEYVASCSDDGK 94 (846)
T ss_pred hhcceeeeccccceEEEEecC----------------Ccc-ccccccccc------cc---------CCceEEEecCCCc
Confidence 666689999999999985443 122 233344433 22 3899999999999
Q ss_pred EEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECC---CCcEEEEecCCCCCcEEEEEcC
Q 000450 603 IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE---TLRVERMFPGHPNYPAKVVWDC 679 (1496)
Q Consensus 603 V~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~---~~~~l~~~~gH~~~V~~V~~sp 679 (1496)
|.|-.+.+.+..+++.- ..++.+|+++|+ ..+...+.+++||.-| +.++.-+ ....+ .+..-.++|.+|+|.
T Consensus 95 v~I~sl~~~~~~~~~df-~rpiksial~Pd-~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~- 169 (846)
T KOG2066|consen 95 VVIGSLFTDDEITQYDF-KRPIKSIALHPD-FSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR- 169 (846)
T ss_pred EEEeeccCCccceeEec-CCcceeEEeccc-hhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec-
Confidence 99999999988877754 458999999998 4445567899999888 6665422 11222 334456789999997
Q ss_pred CCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCc
Q 000450 680 PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNT 745 (1496)
Q Consensus 680 dg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~ 745 (1496)
|.+++-+..+ -|+|||+.+++.+..+.-....+-...|-+.......+..++.|..
T Consensus 170 -g~lIAWand~---------Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d 225 (846)
T KOG2066|consen 170 -GNLIAWANDD---------GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD 225 (846)
T ss_pred -CcEEEEecCC---------CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCC
Confidence 6688887766 4899999999988877765545544445555556666677776654
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0012 Score=81.46 Aligned_cols=124 Identities=18% Similarity=0.133 Sum_probs=86.2
Q ss_pred EecCCccEEEEEEecCCCCcccCcCCC-EEEEEeCCC--cEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEE
Q 000450 566 FLGHTGAVLCLAAHRMVGTAKGWSFNE-VLVSGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642 (1496)
Q Consensus 566 l~gH~~~V~~La~spd~~~~~~~~~~~-~L~SGs~Dg--tV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l 642 (1496)
+..+.+.+.++.|+|| ++ ++++.+.++ .|.+||+.++.. ..+..+........|+|+ ++.+
T Consensus 229 ~~~~~~~~~~~~~spD---------g~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~d------g~~l 292 (417)
T TIGR02800 229 VASFPGMNGAPAFSPD---------GSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPD------GKSI 292 (417)
T ss_pred eecCCCCccceEECCC---------CCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCC------CCEE
Confidence 3445566778899998 55 445555554 588999987764 344455555567789998 7877
Q ss_pred EEEeCC-C--cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 643 LSVGED-F--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 643 ~Sgs~D-g--sV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
+.++.. + .|.++|+.+++.. .+..+...+....|+|++++++..+.+ .+...|++||+.++..
T Consensus 293 ~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~-----~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 293 AFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHRE-----GGGFNIAVMDLDGGGE 358 (417)
T ss_pred EEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEcc-----CCceEEEEEeCCCCCe
Confidence 766543 3 5778888877654 333455567788999999999988876 1113899999988654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00011 Score=83.57 Aligned_cols=129 Identities=14% Similarity=0.205 Sum_probs=93.6
Q ss_pred ecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCce---EEEEccc-----CCCEEEEEECCCCCCCCC
Q 000450 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL---ITVMHHH-----VAPVRQIILSPPQTEHPW 638 (1496)
Q Consensus 567 ~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~---l~~~~~H-----~~~V~~l~~sPd~~~~~~ 638 (1496)
.+|+--|+++.++.| .+.++|+ .|-.|.+|+++--.. +..++.+ +.-|++..|+|..
T Consensus 161 NaHtyhiNSIS~NsD---------~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~----- 225 (433)
T KOG1354|consen 161 NAHTYHINSISVNSD---------KETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH----- 225 (433)
T ss_pred ccceeEeeeeeecCc---------cceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH-----
Confidence 578888999999887 7888887 588999999874332 1222222 3458888999986
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEE----EEe------------cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEE
Q 000450 639 SDCFLSVGEDFSVALASLETLRVE----RMF------------PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLF 702 (1496)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~~~~~l----~~~------------~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~ 702 (1496)
.+.|+-.+..|+|+|-|++..... ..| .+--+.|..++|++.|+|+++-.. -+|+
T Consensus 226 cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy---------ltvk 296 (433)
T KOG1354|consen 226 CNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY---------LTVK 296 (433)
T ss_pred ccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc---------ceeE
Confidence 568999999999999999842110 111 112236789999999999997665 4999
Q ss_pred EEEC-CCCeEEEEEeCCC
Q 000450 703 IWDV-KTGARERVLRGTA 719 (1496)
Q Consensus 703 VWDl-~tg~~~~~l~gh~ 719 (1496)
+||+ ...+.+.++.-|.
T Consensus 297 ~wD~nme~~pv~t~~vh~ 314 (433)
T KOG1354|consen 297 LWDLNMEAKPVETYPVHE 314 (433)
T ss_pred EEeccccCCcceEEeehH
Confidence 9999 4566677777665
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0028 Score=78.23 Aligned_cols=184 Identities=10% Similarity=0.039 Sum_probs=109.3
Q ss_pred CccccccccCCCCCCCcccccccCCccEEEEEeeccccccCC--EEEE-EEcCCcEEEEEecccccCCCCCCccccCCcc
Q 000450 485 DTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY--AIVY-GFFSGEIEVIQFDLFERHNSPGASLKVNSHV 561 (1496)
Q Consensus 485 ~~i~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~~s~~~f~P~--~lv~-Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~ 561 (1496)
..+.+|++..... ..+..+...+.+.. |+|+ .+++ ...+|...|+.|+ ..++.
T Consensus 214 ~~i~v~d~~~g~~-----~~~~~~~~~~~~~~------~spDg~~l~~~~~~~~~~~i~~~d-------------~~~~~ 269 (417)
T TIGR02800 214 PEIYVQDLATGQR-----EKVASFPGMNGAPA------FSPDGSKLAVSLSKDGNPDIYVMD-------------LDGKQ 269 (417)
T ss_pred cEEEEEECCCCCE-----EEeecCCCCccceE------ECCCCCEEEEEECCCCCccEEEEE-------------CCCCC
Confidence 3566777654321 11122333344444 5554 5554 4556665555455 22222
Q ss_pred eEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeC-CC--cEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCC
Q 000450 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-DC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1496)
Q Consensus 562 ~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~-Dg--tV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~ 638 (1496)
...+..|.+......|+|+ ++.|+..+. ++ .|.+||+.+++. ..+..+...+....|+|+
T Consensus 270 -~~~l~~~~~~~~~~~~s~d---------g~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spd------ 332 (417)
T TIGR02800 270 -LTRLTNGPGIDTEPSWSPD---------GKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPD------ 332 (417)
T ss_pred -EEECCCCCCCCCCEEECCC---------CCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCC------
Confidence 2334445555556788887 676655543 33 588888887764 344445566778899999
Q ss_pred CCEEEEEeCCC---cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 639 SDCFLSVGEDF---SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 639 g~~l~Sgs~Dg---sV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
++.++..+.++ .|.+||+.++.... +... .......|+||+++|+..+.+ ++...+++.+. +|...+.+
T Consensus 333 g~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~-----~~~~~l~~~~~-~g~~~~~~ 404 (417)
T TIGR02800 333 GDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTR-----GGRGVLGLVST-DGRFRARL 404 (417)
T ss_pred CCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeC-----CCcEEEEEEEC-CCceeeEC
Confidence 88888888776 88999998865433 3322 224456899999999988876 22235666664 34544554
Q ss_pred eC
Q 000450 716 RG 717 (1496)
Q Consensus 716 ~g 717 (1496)
..
T Consensus 405 ~~ 406 (417)
T TIGR02800 405 PL 406 (417)
T ss_pred CC
Confidence 43
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0039 Score=77.62 Aligned_cols=165 Identities=16% Similarity=0.086 Sum_probs=101.2
Q ss_pred cCCccEEEEEeeccccccCCEEEEEEc-CCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000450 507 HKEKIVSSSMVISESFYAPYAIVYGFF-SGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1496)
Q Consensus 507 ~h~~~Vts~~~~s~~~f~P~~lv~Gs~-dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~ 585 (1496)
.+...+.+..+.++.. .+++.+. ++.-.|+.|+ ..+++.. .+....+.+....|+||
T Consensus 196 ~~~~~~~~p~wSpDG~----~la~~s~~~~~~~l~~~~-------------l~~g~~~-~l~~~~g~~~~~~~SpD---- 253 (430)
T PRK00178 196 QSREPILSPRWSPDGK----RIAYVSFEQKRPRIFVQN-------------LDTGRRE-QITNFEGLNGAPAWSPD---- 253 (430)
T ss_pred cCCCceeeeeECCCCC----EEEEEEcCCCCCEEEEEE-------------CCCCCEE-EccCCCCCcCCeEECCC----
Confidence 3445566666333333 6766554 3443454454 2233322 23333344557899998
Q ss_pred ccCcCCCEEE-EEeCCC--cEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC-CC--cEEEEECCCC
Q 000450 586 KGWSFNEVLV-SGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DF--SVALASLETL 659 (1496)
Q Consensus 586 ~~~~~~~~L~-SGs~Dg--tV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~-Dg--sV~lWdl~~~ 659 (1496)
++.|+ +.+.++ .|.+||+.+++.. .+..+........|+|+ |+.++..+. ++ .|.++|+.++
T Consensus 254 -----G~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spD------g~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 254 -----GSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKD------GRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred -----CCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCC------CCEEEEEECCCCCceEEEEECCCC
Confidence 66554 665555 5888899887654 45556666677889999 776665543 33 5777788887
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 660 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 660 ~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
+..+... .........|+|||++|+....+ ++...|++||+.+++.
T Consensus 322 ~~~~lt~-~~~~~~~~~~Spdg~~i~~~~~~-----~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 322 RAERVTF-VGNYNARPRLSADGKTLVMVHRQ-----DGNFHVAAQDLQRGSV 367 (430)
T ss_pred CEEEeec-CCCCccceEECCCCCEEEEEEcc-----CCceEEEEEECCCCCE
Confidence 7544322 12234467899999999887654 1124699999998865
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00094 Score=75.08 Aligned_cols=118 Identities=14% Similarity=0.031 Sum_probs=92.9
Q ss_pred EEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEE--EEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCc
Q 000450 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLIT--VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS 650 (1496)
Q Consensus 573 V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~--~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~Dgs 650 (1496)
..++.|++. +..++++-.+|.+.+-+...+.+.. .++.|.-+++...|+-.+ .+.+.+||.|+.
T Consensus 124 ~lslD~~~~---------~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~-----pnlvytGgDD~~ 189 (339)
T KOG0280|consen 124 ALSLDISTS---------GTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKE-----PNLVYTGGDDGS 189 (339)
T ss_pred eeEEEeecc---------CceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCC-----CceEEecCCCce
Confidence 346677764 6778888889999876666555544 889999999999998763 579999999999
Q ss_pred EEEEECC-CCcEEEE-ecCCCCCcEEEEEcC-CCCEEEEEEcCCCCCCCCCCEEEEEECCC-CeEE
Q 000450 651 VALASLE-TLRVERM-FPGHPNYPAKVVWDC-PRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARE 712 (1496)
Q Consensus 651 V~lWdl~-~~~~l~~-~~gH~~~V~~V~~sp-dg~~L~tgs~D~sg~~D~dg~V~VWDl~t-g~~~ 712 (1496)
+..||++ .++.+.. -..|...|.+|.-+| .+.+++||+.| ..|++||.++ |+.+
T Consensus 190 l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYD--------e~i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 190 LSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYD--------ECIRVLDTRNMGKPL 247 (339)
T ss_pred EEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccc--------cceeeeehhcccCcc
Confidence 9999999 4444433 456888999999886 46799999998 8999999984 4443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0026 Score=79.17 Aligned_cols=130 Identities=15% Similarity=0.167 Sum_probs=90.9
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCC---CcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCC
Q 000450 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD---CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1496)
Q Consensus 563 ~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~D---gtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g 639 (1496)
.+.+..|...+....|+|| ++.|+..+.+ ..|.+||+.+++... +....+.+....|+|+ |
T Consensus 191 ~~~l~~~~~~~~~p~wSpD---------G~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpD------G 254 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPD---------GKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPD------G 254 (430)
T ss_pred ceEEecCCCceeeeeECCC---------CCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCC------C
Confidence 3455567778999999998 7777665533 368999999887543 3333445567899999 7
Q ss_pred CEEE-EEeCCC--cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 640 DCFL-SVGEDF--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 640 ~~l~-Sgs~Dg--sV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
+.++ +.+.++ .|.+||+++++..+ +..+........|+|||+.|+..+.. ++...|+++|+.+|+..+.
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~-----~g~~~iy~~d~~~g~~~~l 326 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDR-----GGKPQIYKVNVNGGRAERV 326 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECC-----CCCceEEEEECCCCCEEEe
Confidence 7665 555555 58888998877543 44455556778999999988776543 1225799999988875443
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0027 Score=78.97 Aligned_cols=125 Identities=16% Similarity=0.171 Sum_probs=79.1
Q ss_pred CccEEEEEEecCCCCcccCcCCCEEEEEe-C----CCcEEEEECCCC---ceEEEEcccCCCEEEEEECCCCCCCCCCCE
Q 000450 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGS-M----DCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1496)
Q Consensus 570 ~~~V~~La~spd~~~~~~~~~~~~L~SGs-~----DgtV~lWDl~tg---~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~ 641 (1496)
.+.....+|+|| ++.|+-.+ . |-.+..||+..+ +.......+.+......|+|| |+.
T Consensus 230 ~g~~~~p~wSPD---------G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD------G~~ 294 (428)
T PRK01029 230 QGNQLMPTFSPR---------KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD------GTR 294 (428)
T ss_pred CCCccceEECCC---------CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCC------CCE
Confidence 344556899998 66555433 2 334555887653 333333333344567899999 887
Q ss_pred EEEEe-CCCcEEEEE--CCC-CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 642 FLSVG-EDFSVALAS--LET-LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 642 l~Sgs-~DgsV~lWd--l~~-~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
|+..+ .++...+|. +.. +.....+..+...+....|+|||++|+..+.+ ++...|++||+.+|+....
T Consensus 295 Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~-----~g~~~I~v~dl~~g~~~~L 366 (428)
T PRK01029 295 LVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI-----KGVRQICVYDLATGRDYQL 366 (428)
T ss_pred EEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcC-----CCCcEEEEEECCCCCeEEc
Confidence 77665 466656664 432 23344454455567789999999999877654 2225799999999876443
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00034 Score=79.87 Aligned_cols=118 Identities=20% Similarity=0.231 Sum_probs=87.3
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.+..|+.+|.|.++++..-. -..+.+.+.+. |...|+|+..-.. +++.|.+.+++|+|++|
T Consensus 266 Lv~~GcRngeI~~iDLR~rn----------qG~~~~a~rly-h~Ssvtslq~Lq~--------s~q~LmaS~M~gkikLy 326 (425)
T KOG2695|consen 266 LVFNGCRNGEIFVIDLRCRN----------QGNGWCAQRLY-HDSSVTSLQILQF--------SQQKLMASDMTGKIKLY 326 (425)
T ss_pred eeEecccCCcEEEEEeeecc----------cCCCcceEEEE-cCcchhhhhhhcc--------ccceEeeccCcCceeEe
Confidence 78999999999996654211 11233444444 8889999886542 27889999999999999
Q ss_pred ECCCCce---EEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecC
Q 000450 607 DLGSGNL---ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG 667 (1496)
Q Consensus 607 Dl~tg~~---l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~g 667 (1496)
|++.-++ ++++.+|...-.-+-+.-+ +....+++++.|.-.|+|.++.+..+.+++-
T Consensus 327 D~R~~K~~~~V~qYeGHvN~~a~l~~~v~----~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 327 DLRATKCKKSVMQYEGHVNLSAYLPAHVK----EEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eehhhhcccceeeeecccccccccccccc----cccceEEEccCeeEEEEEecccCceeeccCC
Confidence 9987776 8899999764443333222 2256888899999999999999999888763
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00034 Score=81.65 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=74.5
Q ss_pred EEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEc-ccCCCEEEEEECCCCCCCCCCCEE
Q 000450 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH-HHVAPVRQIILSPPQTEHPWSDCF 642 (1496)
Q Consensus 564 ~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~-~H~~~V~~l~~sPd~~~~~~g~~l 642 (1496)
..+-||-..++.++++|| +++++++..|..|++=....-..+..|. ||+.-|..+++-++ +.|
T Consensus 145 ~~~lGhvSml~dVavS~D---------~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-------~~L 208 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPD---------DQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-------YLL 208 (390)
T ss_pred chhhhhhhhhheeeecCC---------CCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-------cee
Confidence 345699999999999998 7999999999999987666555555554 59999999999875 569
Q ss_pred EEEeCCCcEEEEECCCCcEEEEec
Q 000450 643 LSVGEDFSVALASLETLRVERMFP 666 (1496)
Q Consensus 643 ~Sgs~DgsV~lWdl~~~~~l~~~~ 666 (1496)
+|+|.|+++++||+++|+++.++.
T Consensus 209 lS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eecCCCCcEEEEecccCCcccccc
Confidence 999999999999999999987774
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0043 Score=77.67 Aligned_cols=128 Identities=12% Similarity=0.091 Sum_probs=87.9
Q ss_pred EEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeC-CC--cEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCC
Q 000450 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-DC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1496)
Q Consensus 564 ~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~-Dg--tV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~ 640 (1496)
+.+..+...+.+..|+|| ++.|+-.+. ++ .|.+||+.+++... +....+......|+|| |+
T Consensus 211 ~~l~~~~~~~~~p~wSPD---------G~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPD------G~ 274 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPD---------GRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPD------GK 274 (448)
T ss_pred eEeecCCCcccCceECCC---------CCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCC------CC
Confidence 345556778899999998 676665543 33 58899998887532 2222333457889999 77
Q ss_pred EEE-EEeCCCc--EEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 641 CFL-SVGEDFS--VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 641 ~l~-Sgs~Dgs--V~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
.|+ +.+.++. |.++|+.+++.. .+..+........|+|||++|+..+.. ++...|+++|+.+++..+
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~-----~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSER-----GGKPQIYRVNLASGKVSR 344 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECC-----CCCceEEEEECCCCCEEE
Confidence 555 5566665 777788877654 344455566788999999998876643 122578899998887644
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.3 Score=58.88 Aligned_cols=81 Identities=12% Similarity=0.076 Sum_probs=63.0
Q ss_pred CCEEEEEECCCCCCCCCCCEEEEEe----------CCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCC-EEEEEEcC
Q 000450 622 APVRQIILSPPQTEHPWSDCFLSVG----------EDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRG-YIACLCRD 690 (1496)
Q Consensus 622 ~~V~~l~~sPd~~~~~~g~~l~Sgs----------~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~-~L~tgs~D 690 (1496)
+.+.-++++|+ ++.+.... ..+.|.++|..+++.+..+.. ...++.++++||++ +|++.+..
T Consensus 248 ~g~q~ia~~~d------g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~ 320 (352)
T TIGR02658 248 GGWQQVAYHRA------RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTG 320 (352)
T ss_pred CcceeEEEcCC------CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCC
Confidence 44556899998 56555432 225899999999999988863 34789999999999 88877743
Q ss_pred CCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 691 HSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 691 ~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
++.|.|.|+.+++.++.+.
T Consensus 321 -------s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 321 -------DKTLYIFDAETGKELSSVN 339 (352)
T ss_pred -------CCcEEEEECcCCeEEeeec
Confidence 2789999999999998874
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.097 Score=64.00 Aligned_cols=115 Identities=17% Similarity=0.270 Sum_probs=82.5
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCC---CcE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD---CSI 603 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~D---gtV 603 (1496)
.++.|+.=-.+.|++.+ +.++. .--.++=+++.|+|. +++++-+|.+ |.|
T Consensus 286 ~VvyGfMPAkvtifnlr----------------~~~v~--df~egpRN~~~fnp~---------g~ii~lAGFGNL~G~m 338 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNLR----------------GKPVF--DFPEGPRNTAFFNPH---------GNIILLAGFGNLPGDM 338 (566)
T ss_pred EEEEecccceEEEEcCC----------------CCEeE--eCCCCCccceEECCC---------CCEEEEeecCCCCCce
Confidence 57788887778873322 22333 233567789999996 7877766644 789
Q ss_pred EEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC------CCcEEEEECCCCcEEE--EecCCCCCcEEE
Q 000450 604 RIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE------DFSVALASLETLRVER--MFPGHPNYPAKV 675 (1496)
Q Consensus 604 ~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~------DgsV~lWdl~~~~~l~--~~~gH~~~V~~V 675 (1496)
-+||..+.+++..+..-.. +-+.|+|| |.+|+++.. |..++||+.. |+.+. +|+. ..+.+
T Consensus 339 EvwDv~n~K~i~~~~a~~t--t~~eW~Pd------Ge~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~s---EL~qv 406 (566)
T KOG2315|consen 339 EVWDVPNRKLIAKFKAANT--TVFEWSPD------GEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKS---ELLQV 406 (566)
T ss_pred EEEeccchhhccccccCCc--eEEEEcCC------CcEEEEEeccccEEecCCeEEEEec-CceeehhhhhH---hHhhe
Confidence 9999999999988876543 55789999 899888764 7899999976 55443 2322 57889
Q ss_pred EEcCC
Q 000450 676 VWDCP 680 (1496)
Q Consensus 676 ~~spd 680 (1496)
.|.|-
T Consensus 407 ~W~P~ 411 (566)
T KOG2315|consen 407 EWRPF 411 (566)
T ss_pred eeeec
Confidence 99874
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00023 Score=78.51 Aligned_cols=94 Identities=15% Similarity=0.141 Sum_probs=71.7
Q ss_pred cEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEE-EEecCCCCCcEEEEEcC-
Q 000450 602 SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE-RMFPGHPNYPAKVVWDC- 679 (1496)
Q Consensus 602 tV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l-~~~~gH~~~V~~V~~sp- 679 (1496)
..+.|+++..+.+..-+.-...|.+++-+|.. .+.+++|+.||.+.+||.++.... ..+..|..+++.|-|+|
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~q-----q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk 234 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQ-----QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK 234 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCccc-----ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC
Confidence 45667766544332222223348888888874 678999999999999999987543 44578999999999999
Q ss_pred CCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 680 PRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 680 dg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
++..|++++.| |.+.-||..+
T Consensus 235 ~p~~Lft~sed--------Gslw~wdas~ 255 (319)
T KOG4714|consen 235 NPEHLFTCSED--------GSLWHWDAST 255 (319)
T ss_pred CchheeEecCC--------CcEEEEcCCC
Confidence 56789999998 9999999865
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.041 Score=68.09 Aligned_cols=119 Identities=13% Similarity=0.139 Sum_probs=85.0
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEE
Q 000450 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642 (1496)
Q Consensus 563 ~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l 642 (1496)
..++.|-+++|.+++.+ ..+|+.+-..|.|.-+.+..+-+...... ...|.++.++-+ ...+
T Consensus 497 ~kt~~G~~DpICAl~~s-----------dk~l~vareSG~I~rySl~nv~l~n~y~~-n~~~y~~~lNCn------stRl 558 (1189)
T KOG2041|consen 497 TKTLLGSKDPICALCIS-----------DKFLMVARESGGIYRYSLNNVVLTNSYPV-NPSIYSIKLNCN------STRL 558 (1189)
T ss_pred ceeeccCCCcceeeeec-----------ceEEEEEeccCceEEEEecceeeeecccc-CchheeEeeccC------cchh
Confidence 35677888999999875 58899999999999999988776665543 346888888765 5567
Q ss_pred EEEeCCCcEEEEECC---CCcEEE-EecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 643 LSVGEDFSVALASLE---TLRVER-MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 643 ~Sgs~DgsV~lWdl~---~~~~l~-~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
+...--|.+.+.|+. ++..+. .+......|+.+.|..|...|+..-.. -.++|++-.
T Consensus 559 AiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeK--------trmyifrgn 619 (1189)
T KOG2041|consen 559 AIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEK--------TRMYIFRGN 619 (1189)
T ss_pred hhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhh--------ceEEEecCc
Confidence 777667788888876 344444 334455679999998887766554433 456666543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00044 Score=84.46 Aligned_cols=169 Identities=18% Similarity=0.178 Sum_probs=121.9
Q ss_pred ccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccC-CCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccC
Q 000450 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH-NSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW 588 (1496)
Q Consensus 510 ~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~-d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~ 588 (1496)
..+.+..+..+.. ++++|+.||-++|...+.-... ...+ +-...+...-+++.||++.|.-+.|+..
T Consensus 15 vkL~c~~WNke~g----yIAcgG~dGlLKVlKl~t~t~d~~~~g-laa~snLsmNQtLeGH~~sV~vvTWNe~------- 82 (1189)
T KOG2041|consen 15 VKLHCAEWNKESG----YIACGGADGLLKVLKLGTDTTDLNKSG-LAAASNLSMNQTLEGHNASVMVVTWNEN------- 82 (1189)
T ss_pred ceEEEEEEcccCC----eEEeccccceeEEEEccccCCcccccc-cccccccchhhhhccCcceEEEEEeccc-------
Confidence 4566777666666 8999999999999776532111 0011 1112222345778999999999999986
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceEEEEcc--cCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEE-EEe
Q 000450 589 SFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE-RMF 665 (1496)
Q Consensus 589 ~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~--H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l-~~~ 665 (1496)
.+.|-|...+|.|.+|-+..|.-...+.. ..+.|.++.|+-| |..++-+-.||.|.+=.++..+.. +.+
T Consensus 83 --~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d------G~kIcIvYeDGavIVGsvdGNRIwgKeL 154 (1189)
T KOG2041|consen 83 --NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD------GTKICIVYEDGAVIVGSVDGNRIWGKEL 154 (1189)
T ss_pred --cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC------CcEEEEEEccCCEEEEeeccceecchhc
Confidence 78899999999999999998875433332 3457899999999 899999999999988777654432 122
Q ss_pred cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 666 PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 666 ~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
.|. ....+.|++|.+.++.+-.+ |.+.++|...
T Consensus 155 kg~--~l~hv~ws~D~~~~Lf~~an--------ge~hlydnqg 187 (1189)
T KOG2041|consen 155 KGQ--LLAHVLWSEDLEQALFKKAN--------GETHLYDNQG 187 (1189)
T ss_pred chh--eccceeecccHHHHHhhhcC--------CcEEEecccc
Confidence 221 23478999999988877776 8999999753
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0086 Score=74.98 Aligned_cols=152 Identities=18% Similarity=0.144 Sum_probs=93.8
Q ss_pred ccCC--EEEEEE-cCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEE-EEEe
Q 000450 523 YAPY--AIVYGF-FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVL-VSGS 598 (1496)
Q Consensus 523 f~P~--~lv~Gs-~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L-~SGs 598 (1496)
|+|+ .++..+ .+|...||.++ ..+++.. .+....+......|+|| ++.| ++.+
T Consensus 225 wSPDG~~La~~s~~~g~~~L~~~d-------------l~tg~~~-~lt~~~g~~~~~~wSPD---------G~~La~~~~ 281 (448)
T PRK04792 225 WSPDGRKLAYVSFENRKAEIFVQD-------------IYTQVRE-KVTSFPGINGAPRFSPD---------GKKLALVLS 281 (448)
T ss_pred ECCCCCEEEEEEecCCCcEEEEEE-------------CCCCCeE-EecCCCCCcCCeeECCC---------CCEEEEEEe
Confidence 5554 676654 35565665555 2223321 12222233446789998 5644 5566
Q ss_pred CCCc--EEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC-CC--cEEEEECCCCcEEEE-ecCCCCCc
Q 000450 599 MDCS--IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DF--SVALASLETLRVERM-FPGHPNYP 672 (1496)
Q Consensus 599 ~Dgt--V~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~-Dg--sV~lWdl~~~~~l~~-~~gH~~~V 672 (1496)
.++. |.+||+.+++. ..+..+........|+|| ++.++..+. ++ .|.++|+.+++..+. +.++ ..
T Consensus 282 ~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpD------G~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~--~~ 352 (448)
T PRK04792 282 KDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPD------GKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE--QN 352 (448)
T ss_pred CCCCeEEEEEECCCCCe-EECccCCCCccceEECCC------CCEEEEEECCCCCceEEEEECCCCCEEEEecCCC--CC
Confidence 6775 77889887764 444555556678899999 776665543 33 466668877776443 2322 33
Q ss_pred EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 673 AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 673 ~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
....|+|||++|+....+ ++...|+++|+.+++.
T Consensus 353 ~~~~~SpDG~~l~~~~~~-----~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRT-----NGKFNIARQDLETGAM 386 (448)
T ss_pred cCeeECCCCCEEEEEEec-----CCceEEEEEECCCCCe
Confidence 457999999999887654 1113678889988875
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00035 Score=82.91 Aligned_cols=172 Identities=16% Similarity=0.179 Sum_probs=119.4
Q ss_pred CCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCc--eeeeEEeeccccceeEeeeccccccccCccccccccc
Q 000450 12 GTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSE--IKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAE 89 (1496)
Q Consensus 12 ~~~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~--~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~ 89 (1496)
-+.+...|.+++.-.+..-.++++.|.+|++|.+.++..+. .....+...|+.+|..+.|
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igf------------------ 792 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGF------------------ 792 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceee------------------
Confidence 34566678888888788889999999999999998632111 1234456789999999984
Q ss_pred ccccccccccCCCCEEEEEeCCCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCC-CCeEEEEcccccccCCccccccc
Q 000450 90 NSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPS-NPRYVCIGCCFIDTNQLSDHHSF 168 (1496)
Q Consensus 90 ~~~~~~g~~s~d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~-~~~ll~~G~~~id~~~l~~~~~~ 168 (1496)
-.|..++ +|.||.|.+||---|+.+....-.+.+|..+.|..++. +..++..||.
T Consensus 793 ---------L~~lr~i--~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcs------------- 848 (1034)
T KOG4190|consen 793 ---------LADLRSI--ASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCS------------- 848 (1034)
T ss_pred ---------eecccee--eeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeecc-------------
Confidence 3344444 46799999999888877765444455677888888876 5556666664
Q ss_pred ccccccccccccCCCCCCCCccEEEEEECCceEEEEEEecCcccc---CCeEEEEEeeccCCCCceeEEEEeCCCcEEEE
Q 000450 169 ESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSI---GPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLV 245 (1496)
Q Consensus 169 ~~v~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~---~~i~~l~~s~~~~d~~~~~llvas~dG~V~lW 245 (1496)
...+|.++|.++.+-+..+.. +..+ .-++++++.+ .|+ .+.+|-++|.|.+.
T Consensus 849 -------------------aeSTVKl~DaRsce~~~E~kV-cna~~Pna~~R~iaVa~---~GN--~lAa~LSnGci~~L 903 (1034)
T KOG4190|consen 849 -------------------AESTVKLFDARSCEWTCELKV-CNAPGPNALTRAIAVAD---KGN--KLAAALSNGCIAIL 903 (1034)
T ss_pred -------------------chhhheeeecccccceeeEEe-ccCCCCchheeEEEecc---Ccc--hhhHHhcCCcEEEE
Confidence 126788888887766655543 2222 2367888763 344 36666788999999
Q ss_pred ECCCC
Q 000450 246 PISKE 250 (1496)
Q Consensus 246 dl~~~ 250 (1496)
|..++
T Consensus 904 DaR~G 908 (1034)
T KOG4190|consen 904 DARNG 908 (1034)
T ss_pred ecCCC
Confidence 87776
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00065 Score=83.57 Aligned_cols=160 Identities=19% Similarity=0.249 Sum_probs=114.5
Q ss_pred EEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC---ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCC
Q 000450 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 649 (1496)
Q Consensus 573 V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg---~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~Dg 649 (1496)
|-...|+|.- + ...++++.+...+ .+|++... ..-..+.+|+..|+.+-|+|.. ...+++++.|.
T Consensus 70 vad~qws~h~--a----~~~wiVsts~qka-iiwnlA~ss~~aIef~lhghsraitd~n~~~q~-----pdVlatcsvdt 137 (1081)
T KOG0309|consen 70 VADVQWSPHP--A----KPYWIVSTSNQKA-IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQH-----PDVLATCSVDT 137 (1081)
T ss_pred hcceecccCC--C----CceeEEecCcchh-hhhhhhcCCccceEEEEecCccceeccccCCCC-----Ccceeeccccc
Confidence 5566777641 1 2567888776554 57998643 2346778999999999999984 56999999999
Q ss_pred cEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCC-eEEEEEeCCCCCceeeee
Q 000450 650 SVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHF 727 (1496)
Q Consensus 650 sV~lWdl~~~-~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg-~~~~~l~gh~a~vi~~~~ 727 (1496)
.|..||++.. +++..+..-...-..|+|+.-...+++.+.. ..|+|||.+-| ..+..+.||.+.+..+.|
T Consensus 138 ~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg--------~~i~vwd~r~gs~pl~s~K~~vs~vn~~~f 209 (1081)
T KOG0309|consen 138 YVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHG--------NDIFVWDLRKGSTPLCSLKGHVSSVNSIDF 209 (1081)
T ss_pred cceeeeccCCCcceeeeecccccCceeeecccCcchhhhccC--------CceEEEeccCCCcceEEecccceeeehHHH
Confidence 9999999874 4566665555567789999766655555554 67999999875 578899999887776654
Q ss_pred ecccccccccceEEcCCccccccceeeccCCcEEeeccccc
Q 000450 728 CKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQND 768 (1496)
Q Consensus 728 ~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~W~l~~~ 768 (1496)
... .-..++..+.|++++.|+....
T Consensus 210 nr~----------------~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 210 NRF----------------KYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred hhh----------------hhhhhcccCCCCceeeeccccc
Confidence 421 1122345566999999986443
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.22 Score=60.24 Aligned_cols=123 Identities=18% Similarity=0.296 Sum_probs=83.2
Q ss_pred ccEEEEEEecCCCCcccCcCCC-EEEEEeCCCcEEEEECC--CCce--EEEEcc----c--CCCEEEEEECCCCCCCCCC
Q 000450 571 GAVLCLAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLG--SGNL--ITVMHH----H--VAPVRQIILSPPQTEHPWS 639 (1496)
Q Consensus 571 ~~V~~La~spd~~~~~~~~~~~-~L~SGs~DgtV~lWDl~--tg~~--l~~~~~----H--~~~V~~l~~sPd~~~~~~g 639 (1496)
..-..++|+|+ ++ ..+..-.+++|.++++. ++.. +..+.. . ......|.++|+ |
T Consensus 192 ~GPRh~~f~pd---------g~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd------g 256 (345)
T PF10282_consen 192 SGPRHLAFSPD---------GKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD------G 256 (345)
T ss_dssp SSEEEEEE-TT---------SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT------S
T ss_pred CCCcEEEEcCC---------cCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC------C
Confidence 34578999997 55 44666778899999988 4432 222221 1 125788999999 6
Q ss_pred CE-EEEEeCCCcEEEEECC--CCc--EEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC--CCCeEE
Q 000450 640 DC-FLSVGEDFSVALASLE--TLR--VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV--KTGARE 712 (1496)
Q Consensus 640 ~~-l~Sgs~DgsV~lWdl~--~~~--~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl--~tg~~~ 712 (1496)
++ +++.-.+.+|.+|+++ +++ .+..++.....+..+.++|+|++|++++.+ .+.|.+|++ ++|.+.
T Consensus 257 ~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~-------s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 257 RFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD-------SNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp SEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT-------TTEEEEEEEETTTTEEE
T ss_pred CEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC-------CCeEEEEEEeCCCCcEE
Confidence 65 4555578899999993 343 344444445568999999999999999987 268998865 688875
Q ss_pred EEE
Q 000450 713 RVL 715 (1496)
Q Consensus 713 ~~l 715 (1496)
..-
T Consensus 330 ~~~ 332 (345)
T PF10282_consen 330 PVG 332 (345)
T ss_dssp EEE
T ss_pred Eec
Confidence 543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.02 Score=67.98 Aligned_cols=129 Identities=16% Similarity=0.231 Sum_probs=104.1
Q ss_pred ecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCC-cEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEE
Q 000450 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDC-SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1496)
Q Consensus 567 ~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~Dg-tV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sg 645 (1496)
.+|.+.|.-..+.-+ ++-++-|..|+ .+-++|..+++. ..+...-+.|.++..+|+ |+.++.+
T Consensus 356 v~~~~~VrY~r~~~~---------~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~d------GK~~vva 419 (668)
T COG4946 356 VGKKGGVRYRRIQVD---------PEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPD------GKKVVVA 419 (668)
T ss_pred cCCCCceEEEEEccC---------CcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCC------CcEEEEE
Confidence 378888887777665 56788899999 899999987764 555667788999999999 8888888
Q ss_pred eCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 646 GEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 646 s~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
-....+.+.|++++.....-....+-|+...|||++++++-+--+ |+.- ..|+++|+.+++....-
T Consensus 420 Ndr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~--gy~t--q~Iklydm~~~Kiy~vT 485 (668)
T COG4946 420 NDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPE--GYYT--QSIKLYDMDGGKIYDVT 485 (668)
T ss_pred cCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCc--ceee--eeEEEEecCCCeEEEec
Confidence 888899999999998765545556679999999999999987654 3333 68999999998876543
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0033 Score=79.62 Aligned_cols=140 Identities=13% Similarity=0.178 Sum_probs=110.7
Q ss_pred CEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEe-------
Q 000450 526 YAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS------- 598 (1496)
Q Consensus 526 ~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs------- 598 (1496)
..+.+|...|+|.+ .|..+.+.++++..|++.|..+..+ |++|+++|
T Consensus 188 r~lf~G~t~G~V~L---------------rD~~s~~~iht~~aHs~siSDfDv~-----------GNlLitCG~S~R~~~ 241 (1118)
T KOG1275|consen 188 RNLFCGDTRGTVFL---------------RDPNSFETIHTFDAHSGSISDFDVQ-----------GNLLITCGYSMRRYN 241 (1118)
T ss_pred cEEEeecccceEEe---------------ecCCcCceeeeeeccccceeeeecc-----------CCeEEEeeccccccc
Confidence 37889999999998 2455668899999999999977654 78899987
Q ss_pred --CCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEE---CCCC-cEEEEecCCCCCc
Q 000450 599 --MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS---LETL-RVERMFPGHPNYP 672 (1496)
Q Consensus 599 --~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWd---l~~~-~~l~~~~gH~~~V 672 (1496)
.|.-|+|||++..+.+.-+.-+.++ .-+.|.|.- ...++.++..|...+-| +.+. --+.++..-...+
T Consensus 242 l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl-----~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i 315 (1118)
T KOG1275|consen 242 LAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSL-----TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGI 315 (1118)
T ss_pred ccccchhhhhhhhhhhccCCcccccCc-hhhhhcccc-----cceEEEEecccceeeccccccCCCccceeEEccCCCcc
Confidence 5678999999988887777777766 567788873 55788888999999998 4332 1234444445568
Q ss_pred EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000450 673 AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 673 ~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWD 705 (1496)
.+..+++.++.|+.|..+ |.|.+|-
T Consensus 316 ~~fDiSsn~~alafgd~~--------g~v~~wa 340 (1118)
T KOG1275|consen 316 SAFDISSNGDALAFGDHE--------GHVNLWA 340 (1118)
T ss_pred eeEEecCCCceEEEeccc--------CcEeeec
Confidence 999999999999999888 9999996
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0053 Score=76.44 Aligned_cols=138 Identities=18% Similarity=0.122 Sum_probs=100.5
Q ss_pred ccCC-EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcc-cC--cCCCEEEEEe
Q 000450 523 YAPY-AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK-GW--SFNEVLVSGS 598 (1496)
Q Consensus 523 f~P~-~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~-~~--~~~~~L~SGs 598 (1496)
++|. .+++|+.+- |.|+ |..+-+.++.+.-|...|+.+.|.|.....+ .+ ...-+++++.
T Consensus 23 w~~~GLiAygshsl-V~VV---------------Ds~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD 86 (1062)
T KOG1912|consen 23 WSPSGLIAYGSHSL-VSVV---------------DSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD 86 (1062)
T ss_pred cCccceEEEecCce-EEEE---------------ehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecc
Confidence 5555 567776543 4441 2334466788888999999999987531111 11 1244788888
Q ss_pred CCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEE
Q 000450 599 MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS-DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW 677 (1496)
Q Consensus 599 ~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g-~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~ 677 (1496)
..|.|.+||...+..+..+..|..+|..+.|-|.. ++. +.++....-.++-+|+..+|+.+-..........++.+
T Consensus 87 ~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~r---d~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~ 163 (1062)
T KOG1912|consen 87 ISGRIILVDFVLASVINWLSHSNDSVQDLCWVPAR---DDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRV 163 (1062)
T ss_pred ccCcEEEEEehhhhhhhhhcCCCcchhheeeeecc---CcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeee
Confidence 99999999999999999999999999999997762 234 57888888899999999999887666555555566666
Q ss_pred cC
Q 000450 678 DC 679 (1496)
Q Consensus 678 sp 679 (1496)
.|
T Consensus 164 DP 165 (1062)
T KOG1912|consen 164 DP 165 (1062)
T ss_pred CC
Confidence 66
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0016 Score=72.13 Aligned_cols=74 Identities=20% Similarity=0.342 Sum_probs=64.1
Q ss_pred cEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceE-EEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCc
Q 000450 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS 650 (1496)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l-~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~Dgs 650 (1496)
.|++++-+|. ..++++.|+.||.+.+||.+..... ..++.|..+|+.+-|+|.. +..|.++++||+
T Consensus 181 ~v~~l~~hp~--------qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~-----p~~Lft~sedGs 247 (319)
T KOG4714|consen 181 AVTALCSHPA--------QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKN-----PEHLFTCSEDGS 247 (319)
T ss_pred cchhhhCCcc--------cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCC-----chheeEecCCCc
Confidence 4999999997 3678999999999999999987533 5678899999999999985 778999999999
Q ss_pred EEEEECCC
Q 000450 651 VALASLET 658 (1496)
Q Consensus 651 V~lWdl~~ 658 (1496)
+.-||-.+
T Consensus 248 lw~wdas~ 255 (319)
T KOG4714|consen 248 LWHWDAST 255 (319)
T ss_pred EEEEcCCC
Confidence 99999763
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.15 Score=61.62 Aligned_cols=201 Identities=13% Similarity=0.115 Sum_probs=111.1
Q ss_pred eEEEEEEcCCCCEEEEEe-CCCcEEEEEccCCCCCceeeeEEeecccc-----------ceeEeeeccccccccCccccc
Q 000450 18 RVTATSALTQPPTLYTGG-SDGSILWWSFSDSSYSEIKPVAMLCGHSA-----------PIADLSICYPAMVSRDGKAEH 85 (1496)
Q Consensus 18 ~Vtava~SpDg~~LaTGs-~DG~I~lWdl~~~~~~~~~~~~~L~GHt~-----------~Vt~La~c~~~~~s~dg~~~~ 85 (1496)
.-..++++||+++|+++. .+|.|.+++++. ++.+.....+..|.+ -..++.
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~--~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~--------------- 150 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDD--DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVV--------------- 150 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECT--TSEEEEEEEEEESEEEESSTTTTSSTCEEEEE---------------
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccC--CcccceeeeecccCCCCCcccccccccceeEE---------------
Confidence 345789999999999886 689999999984 333332222222221 111222
Q ss_pred ccccccccccccccCCCCEEEEEeC-CCeEEEEECCCCe--EEE--eecCCCCCCCCcEEEEcCCCCeEEEEcccccccC
Q 000450 86 WKAENSSNVMGKSSLDNGALISACT-DGVLCVWSRSSGH--CRR--RRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTN 160 (1496)
Q Consensus 86 ~~~~~~~~~~g~~s~d~~~LaSas~-DG~l~VWdv~~G~--ci~--~~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~ 160 (1496)
++||+++++.... ...|.+++++.+. ... ..+++. |..-.-..|+++++++.+-+.
T Consensus 151 ------------~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~--G~GPRh~~f~pdg~~~Yv~~e----- 211 (345)
T PF10282_consen 151 ------------FSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP--GSGPRHLAFSPDGKYAYVVNE----- 211 (345)
T ss_dssp ------------E-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST--TSSEEEEEE-TTSSEEEEEET-----
T ss_pred ------------ECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc--CCCCcEEEEcCCcCEEEEecC-----
Confidence 5788887876543 4579999998654 422 234443 333333456666655443322
Q ss_pred CcccccccccccccccccccCCCCCCCCccEEEEEECC--c--eEEEEEEecC--ccccC-CeEEEEEeeccCCCCceeE
Q 000450 161 QLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTY--G--LTIVQTVFHG--NLSIG-PWKFMDVVSLGEDMGKHYG 233 (1496)
Q Consensus 161 ~l~~~~~~~~v~~~~~~~d~~~~~~~~~~~~I~v~D~~--t--~~~l~~l~~~--~~s~~-~i~~l~~s~~~~d~~~~~l 233 (1496)
...+|.+++.. + .+.++++... ..... +...+.++ ||++ .+
T Consensus 212 ---------------------------~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is---pdg~--~l 259 (345)
T PF10282_consen 212 ---------------------------LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS---PDGR--FL 259 (345)
T ss_dssp ---------------------------TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE----TTSS--EE
T ss_pred ---------------------------CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe---cCCC--EE
Confidence 12566666655 3 3444444321 11111 45677777 5665 37
Q ss_pred EEE-eCCCcEEEEECCCCCccccccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCe
Q 000450 234 LMV-DSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDH 300 (1496)
Q Consensus 234 lva-s~dG~V~lWdl~~~~~~~~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~ 300 (1496)
+++ ...+.|.+++++... + .+..+.........-+.++++|+|+.|+.++.+.
T Consensus 260 yvsnr~~~sI~vf~~d~~~------g--------~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 260 YVSNRGSNSISVFDLDPAT------G--------TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS 313 (345)
T ss_dssp EEEECTTTEEEEEEECTTT------T--------TEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred EEEeccCCEEEEEEEecCC------C--------ceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence 777 778999999995431 0 0111111111112247899999999999887543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.001 Score=78.19 Aligned_cols=171 Identities=18% Similarity=0.182 Sum_probs=121.1
Q ss_pred cCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcc
Q 000450 507 HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 586 (1496)
Q Consensus 507 ~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~ 586 (1496)
-|.+.|+.+...... .++.++.||.++. |.... ..--+.+..+..|-+.|.+++.+.+
T Consensus 7 mhrd~i~hv~~tka~-----fiiqASlDGh~KF--WkKs~----------isGvEfVKhFraHL~~I~sl~~S~d----- 64 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAK-----FIIQASLDGHKKF--WKKSR----------ISGVEFVKHFRAHLGVILSLAVSYD----- 64 (558)
T ss_pred cccceeeeEeeehhh-----eEEeeecchhhhh--cCCCC----------ccceeehhhhHHHHHHHHhhhcccc-----
Confidence 367777776533333 6899999999998 43100 0111344556677777777777665
Q ss_pred cCcCCCEEEEEeC-CCcEEEEECCCCc------------------------------------------------eEEEE
Q 000450 587 GWSFNEVLVSGSM-DCSIRIWDLGSGN------------------------------------------------LITVM 617 (1496)
Q Consensus 587 ~~~~~~~L~SGs~-DgtV~lWDl~tg~------------------------------------------------~l~~~ 617 (1496)
+.++.|++. |..++++|+.+-. ....-
T Consensus 65 ----g~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk 140 (558)
T KOG0882|consen 65 ----GWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK 140 (558)
T ss_pred ----ceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec
Confidence 677788776 8888888876321 01111
Q ss_pred cccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCC-Cc-----E---------EEEecCCCCCcEEEEEcCCCC
Q 000450 618 HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-LR-----V---------ERMFPGHPNYPAKVVWDCPRG 682 (1496)
Q Consensus 618 ~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~-~~-----~---------l~~~~gH~~~V~~V~~spdg~ 682 (1496)
.-|..+|.++.++|. +++++|....|.|..|..+. .+ . +..++.....+.++.|+|++.
T Consensus 141 klH~sPV~~i~y~qa------~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~ 214 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQA------GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA 214 (558)
T ss_pred ccccCceEEEEeecc------ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC
Confidence 248889999999998 89999999999999999872 11 1 122233455678999999999
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 683 YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 683 ~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
.+.+-..| ..|++++.++|++++.+..
T Consensus 215 qistl~~D--------rkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 215 QISTLNPD--------RKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred cccccCcc--------cEEEEEEeccchhhhhhhc
Confidence 99988877 9999999999999887753
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.2 Score=58.70 Aligned_cols=205 Identities=11% Similarity=0.094 Sum_probs=119.1
Q ss_pred EEEEEcCCCCEEEEEe-CCCcEEEEEccCCCCCceeeeEEeeccccceeEe----eeccccccccCcccccccccccccc
Q 000450 20 TATSALTQPPTLYTGG-SDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADL----SICYPAMVSRDGKAEHWKAENSSNV 94 (1496)
Q Consensus 20 tava~SpDg~~LaTGs-~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~L----a~c~~~~~s~dg~~~~~~~~~~~~~ 94 (1496)
+-+++++||++|+++. .-|.|.+.-+.. .+...+..-+.-|+++.-.- ..|+.+
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~--dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a------------------- 150 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQA--DGSLQPVVQVVKHTGSGPHERQESPHVHSA------------------- 150 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEccc--CCccccceeeeecCCCCCCccccCCcccee-------------------
Confidence 8899999999999985 568899999974 34333333344455541110 001222
Q ss_pred cccccCCCCEEEEEe--CCCeEEEEECCCCeEEEee--cCCCCCCCCcEEEEcCCCCeEEEEcccccccCCccccccccc
Q 000450 95 MGKSSLDNGALISAC--TDGVLCVWSRSSGHCRRRR--KLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFES 170 (1496)
Q Consensus 95 ~g~~s~d~~~LaSas--~DG~l~VWdv~~G~ci~~~--~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~ 170 (1496)
.+.||+++|++.. .| +|.++++++|++-... .+++ |.-..-..|+|+++++.+-+.
T Consensus 151 --~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~--G~GPRHi~FHpn~k~aY~v~E--------------- 210 (346)
T COG2706 151 --NFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKP--GAGPRHIVFHPNGKYAYLVNE--------------- 210 (346)
T ss_pred --eeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCC--CCCcceEEEcCCCcEEEEEec---------------
Confidence 2688999998874 45 6999999999865442 2232 443344567777776554332
Q ss_pred ccccccccccCCCCCCCCccEEEEEECCc--e--EEEEEE---ecCccccCCeEEEEEeeccCCCCceeEEEE-eCCCcE
Q 000450 171 VEGDLVSEDKEVPMKNPPKCTLVIVDTYG--L--TIVQTV---FHGNLSIGPWKFMDVVSLGEDMGKHYGLMV-DSVGRL 242 (1496)
Q Consensus 171 v~~~~~~~d~~~~~~~~~~~~I~v~D~~t--~--~~l~~l---~~~~~s~~~i~~l~~s~~~~d~~~~~llva-s~dG~V 242 (1496)
.+.+|.+|.-.. + +.++++ ...-....|..++.++ +||+- +++. -....|
T Consensus 211 -----------------L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis---~dGrF--LYasNRg~dsI 268 (346)
T COG2706 211 -----------------LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS---PDGRF--LYASNRGHDSI 268 (346)
T ss_pred -----------------cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC---CCCCE--EEEecCCCCeE
Confidence 236777765443 2 333333 2222334566777877 56663 5555 334488
Q ss_pred EEEECCCCCccccccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEEeCCeE
Q 000450 243 QLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC 301 (1496)
Q Consensus 243 ~lWdl~~~~~~~~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~~ 301 (1496)
-++.++.... .+..+.........-+...|++.|+.|+....+.-
T Consensus 269 ~~f~V~~~~g--------------~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd 313 (346)
T COG2706 269 AVFSVDPDGG--------------KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSD 313 (346)
T ss_pred EEEEEcCCCC--------------EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCC
Confidence 8888876521 11111111111112356778899998888766543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.039 Score=75.80 Aligned_cols=116 Identities=13% Similarity=0.137 Sum_probs=84.1
Q ss_pred EEEEEEecCCCCcccCcCCC-EEEEEeCCCcEEEEECCCCceEEEEcc-------------c--------CCCEEEEEEC
Q 000450 573 VLCLAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLGSGNLITVMHH-------------H--------VAPVRQIILS 630 (1496)
Q Consensus 573 V~~La~spd~~~~~~~~~~~-~L~SGs~DgtV~lWDl~tg~~l~~~~~-------------H--------~~~V~~l~~s 630 (1496)
.+.++++|+ +. ++++-+.++.|++||+.++.......+ + -..-..++++
T Consensus 742 P~GIavspd---------G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd 812 (1057)
T PLN02919 742 PSGISLSPD---------LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA 812 (1057)
T ss_pred ccEEEEeCC---------CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe
Confidence 457899987 44 777778889999999987653211100 0 0112477888
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEec-------------CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCC
Q 000450 631 PPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-------------GHPNYPAKVVWDCPRGYIACLCRDHSRTSDA 697 (1496)
Q Consensus 631 Pd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~-------------gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~ 697 (1496)
|+ |+.+++-..++.|++||..++....... ++-..+..|+++++|+.+++-+.+
T Consensus 813 ~d------G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N------- 879 (1057)
T PLN02919 813 KD------GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN------- 879 (1057)
T ss_pred CC------CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC-------
Confidence 87 8899999999999999998877653321 112357899999999877766555
Q ss_pred CCEEEEEECCCCeE
Q 000450 698 VDVLFIWDVKTGAR 711 (1496)
Q Consensus 698 dg~V~VWDl~tg~~ 711 (1496)
++|++||+.+++.
T Consensus 880 -n~Irvid~~~~~~ 892 (1057)
T PLN02919 880 -SLIRYLDLNKGEA 892 (1057)
T ss_pred -CEEEEEECCCCcc
Confidence 8999999999865
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.049 Score=60.97 Aligned_cols=147 Identities=10% Similarity=-0.083 Sum_probs=99.7
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCc--cEEEEEEecCCCCcccCcCCCEEEEEeCCCcEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTG--AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR 604 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~--~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~ 604 (1496)
.+..++.|.++++...+. ...+. .-|.. .++++++++| +.++++-+....|.
T Consensus 130 ~~~i~sndht~k~~~~~~-------------~s~~~----~~h~~~~~~ns~~~snd---------~~~~~~Vgds~~Vf 183 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSG-------------DSNKF----AVHNQNLTQNSLHYSND---------PSWGSSVGDSRRVF 183 (344)
T ss_pred ceeeccCCcceeEEEEec-------------Ccccc----eeeccccceeeeEEcCC---------CceEEEecCCCcce
Confidence 466677788888744431 11111 12333 3788999997 89999999999999
Q ss_pred EEECCCC-ceE-E-EEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE-----ecCCCCCcEEEE
Q 000450 605 IWDLGSG-NLI-T-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM-----FPGHPNYPAKVV 676 (1496)
Q Consensus 605 lWDl~tg-~~l-~-~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~-----~~gH~~~V~~V~ 676 (1496)
.|.+... +.+ . ....-+..=.+..|+.. ...||++..||++.|||++.....+. -+.|.+.+..+.
T Consensus 184 ~y~id~~sey~~~~~~a~t~D~gF~~S~s~~------~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~ 257 (344)
T KOG4532|consen 184 RYAIDDESEYIENIYEAPTSDHGFYNSFSEN------DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCR 257 (344)
T ss_pred EEEeCCccceeeeeEecccCCCceeeeeccC------cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEE
Confidence 9998753 222 2 22222334466778776 67999999999999999997654332 246888999999
Q ss_pred EcCCCC---EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 677 WDCPRG---YIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 677 ~spdg~---~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
|+|-|. ++++-.. +.+.|-|++++.....
T Consensus 258 Fsl~g~lDLLf~sEhf---------s~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 258 FSLYGLLDLLFISEHF---------SRVHVVDTRNYVNHQV 289 (344)
T ss_pred ecCCCcceEEEEecCc---------ceEEEEEcccCceeeE
Confidence 997543 3333332 6899999999875443
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=96.89 E-value=2.8 Score=57.21 Aligned_cols=115 Identities=12% Similarity=0.101 Sum_probs=65.8
Q ss_pred CccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCce--------EEEEc----------ccCCCEEEEEECC
Q 000450 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL--------ITVMH----------HHVAPVRQIILSP 631 (1496)
Q Consensus 570 ~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~--------l~~~~----------~H~~~V~~l~~sP 631 (1496)
...|.+++|+++ +..++.-..|++|.+|....... ...+. .-...+..+.|..
T Consensus 426 ~~~v~~vaf~~~---------~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (928)
T PF04762_consen 426 PSPVNDVAFSPS---------NSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLN 496 (928)
T ss_pred CCCcEEEEEeCC---------CCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeC
Confidence 467999999986 55588888999999988543221 11111 1234567788766
Q ss_pred CCCCCCCCCEEEEEeCC---CcEEEEECCCCc---EEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000450 632 PQTEHPWSDCFLSVGED---FSVALASLETLR---VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 632 d~~~~~~g~~l~Sgs~D---gsV~lWdl~~~~---~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWD 705 (1496)
+ ...++....+ ..+.++++...+ .+.....-...+..+...++...++.-..| |.++..+
T Consensus 497 ~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~--------G~v~~~~ 562 (928)
T PF04762_consen 497 D------DTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTND--------GKVFQLS 562 (928)
T ss_pred C------CEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECC--------CEEEEee
Confidence 5 4444444443 567777774332 222222223445555555555445555555 7777554
Q ss_pred CC
Q 000450 706 VK 707 (1496)
Q Consensus 706 l~ 707 (1496)
..
T Consensus 563 ~~ 564 (928)
T PF04762_consen 563 SD 564 (928)
T ss_pred cC
Confidence 43
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.002 Score=79.40 Aligned_cols=128 Identities=15% Similarity=0.175 Sum_probs=97.7
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc-eEEEEcccCCCEEEEEECCCCCCCCCC
Q 000450 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSPPQTEHPWS 639 (1496)
Q Consensus 561 ~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~-~l~~~~~H~~~V~~l~~sPd~~~~~~g 639 (1496)
.....+.||+..|+.+-|+|.+ ...|++++.|..|..||+++.. ++..+......-.+|.|+-.. +
T Consensus 105 aIef~lhghsraitd~n~~~q~--------pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~-----p 171 (1081)
T KOG0309|consen 105 AIEFVLHGHSRAITDINFNPQH--------PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD-----P 171 (1081)
T ss_pred ceEEEEecCccceeccccCCCC--------CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccC-----c
Confidence 4456678999999999999974 7899999999999999998765 445555555567889998762 4
Q ss_pred CEEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCC-CCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 640 DCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCP-RGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~~~-~~l~~~~gH~~~V~~V~~spd-g~~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
+.+++ +.-+.|.+||++.| .++..+.+|...|..+.|..- ...+.+.+.| ++|+.||.....
T Consensus 172 ~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d--------~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 172 NVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSND--------GTVKFWDYSKST 235 (1081)
T ss_pred chhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCC--------Cceeeecccccc
Confidence 45544 45567999999865 578899999999999888542 3345555555 999999986543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.15 Score=70.29 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=82.2
Q ss_pred EEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEccc---------------CCCEEEEEECCCCCCCCC
Q 000450 574 LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH---------------VAPVRQIILSPPQTEHPW 638 (1496)
Q Consensus 574 ~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H---------------~~~V~~l~~sPd~~~~~~ 638 (1496)
..++++|+ .+.++++.+.++.|++||..++... .+.+. -.....++++|+
T Consensus 686 ~gVa~dp~--------~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspd------ 750 (1057)
T PLN02919 686 WDVCFEPV--------NEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPD------ 750 (1057)
T ss_pred eEEEEecC--------CCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCC------
Confidence 57888885 2678888889999999999877542 22211 123456889998
Q ss_pred CC-EEEEEeCCCcEEEEECCCCcEEEEecC---------------------CCCCcEEEEEcCCCCEEEEEEcCCCCCCC
Q 000450 639 SD-CFLSVGEDFSVALASLETLRVERMFPG---------------------HPNYPAKVVWDCPRGYIACLCRDHSRTSD 696 (1496)
Q Consensus 639 g~-~l~Sgs~DgsV~lWdl~~~~~l~~~~g---------------------H~~~V~~V~~spdg~~L~tgs~D~sg~~D 696 (1496)
++ .+++-+.++.|++||++++.......+ .-..+..++++++|..+++-..+
T Consensus 751 G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N------ 824 (1057)
T PLN02919 751 LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN------ 824 (1057)
T ss_pred CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC------
Confidence 66 666777889999999987654221110 11235689999999876666555
Q ss_pred CCCEEEEEECCCCeEEE
Q 000450 697 AVDVLFIWDVKTGARER 713 (1496)
Q Consensus 697 ~dg~V~VWDl~tg~~~~ 713 (1496)
++|++||..++....
T Consensus 825 --~rIrviD~~tg~v~t 839 (1057)
T PLN02919 825 --HKIKKLDPATKRVTT 839 (1057)
T ss_pred --CEEEEEECCCCeEEE
Confidence 899999998877653
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0079 Score=74.07 Aligned_cols=76 Identities=16% Similarity=0.080 Sum_probs=63.5
Q ss_pred cCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCC
Q 000450 620 HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVD 699 (1496)
Q Consensus 620 H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg 699 (1496)
....|.+++++|+ ...++.|+.||+|.+||...+... +....-.++.++|+|+|.++++|+.- |
T Consensus 258 L~s~v~~ca~sp~------E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~q--------G 321 (545)
T PF11768_consen 258 LPSQVICCARSPS------EDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQ--------G 321 (545)
T ss_pred cCCcceEEecCcc------cceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCC--------c
Confidence 5668999999999 789999999999999998766433 22345668999999999999999988 9
Q ss_pred EEEEEECCCCeE
Q 000450 700 VLFIWDVKTGAR 711 (1496)
Q Consensus 700 ~V~VWDl~tg~~ 711 (1496)
.+.+||+.-...
T Consensus 322 elQ~FD~ALspi 333 (545)
T PF11768_consen 322 ELQCFDMALSPI 333 (545)
T ss_pred eEEEEEeecCcc
Confidence 999999965544
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.49 Score=57.54 Aligned_cols=120 Identities=17% Similarity=0.206 Sum_probs=84.4
Q ss_pred cCCccEEEEEEecCCCCcccCcCCC-EEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEe
Q 000450 568 GHTGAVLCLAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 646 (1496)
Q Consensus 568 gH~~~V~~La~spd~~~~~~~~~~~-~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs 646 (1496)
+-.++|...+|.|+ + .+ -+++|-++-++.++|++.. ..+.+ ..+.=..+.|+|. +++++.++
T Consensus 272 ~~~~pVhdf~W~p~-----S---~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~------~r~il~ag 334 (561)
T COG5354 272 DLKDPVHDFTWEPL-----S---SRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPH------ERYILFAG 334 (561)
T ss_pred cccccceeeeeccc-----C---CceeEEecccccceeecccccc-eEEec--CCcccccccccCc------ccEEEEec
Confidence 55789999999997 1 33 4566779999999999754 44444 3445577889998 88888876
Q ss_pred CC---CcEEEEECCCCcEE-EEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 647 ED---FSVALASLETLRVE-RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 647 ~D---gsV~lWdl~~~~~l-~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
-| |.+-+||......+ ..+.+-. ..-+.|+||+.|+.+.... .--..|..|.|||+..
T Consensus 335 F~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts--~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 335 FDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTS--EKLRVDNSIKLWDVYG 396 (561)
T ss_pred CCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCC--cccccCcceEEEEecC
Confidence 55 78999998765443 3565443 3457899999998876531 1112347899999853
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.76 Score=56.15 Aligned_cols=109 Identities=11% Similarity=-0.013 Sum_probs=77.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~ 670 (1496)
+..+..++.++.+..||..+|+.+...... ......+ . +..+..++.|+.+..+|..+++.+-.......
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~--~------~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~ 310 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV--D------DNRLYVTDADGVVVALDRRSGSELWKNDELKY 310 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE--e------CCEEEEECCCCeEEEEECCCCcEEEccccccC
Confidence 456777888999999999999887665421 1111111 2 56777888999999999999988765532111
Q ss_pred -CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCC
Q 000450 671 -YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1496)
Q Consensus 671 -~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~ 719 (1496)
....... .+..|++++.+ |.|++||..+|+.+..+.-+.
T Consensus 311 ~~~ssp~i--~g~~l~~~~~~--------G~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 311 RQLTAPAV--VGGYLVVGDFE--------GYLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred CccccCEE--ECCEEEEEeCC--------CEEEEEECCCCCEEEEEEcCC
Confidence 1111122 46788899888 999999999999988877554
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0055 Score=75.36 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=63.2
Q ss_pred CcceeeeEecCCCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccC
Q 000450 1 MKCRSVACIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRD 80 (1496)
Q Consensus 1 ~~~~~~~~lw~~~~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~d 80 (1496)
|||-+|--+ |-...|+|++++|+...|+.|+.||+|++||... + ...+.-+.-..+.++
T Consensus 248 lqrvsvtsi----pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~---~----~t~~~ka~~~P~~ia---------- 306 (545)
T PF11768_consen 248 LQRVSVTSI----PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTR---G----VTLLAKAEFIPTLIA---------- 306 (545)
T ss_pred eeEEEEEEE----ecCCcceEEecCcccceEEEEecCCeEEEEEcCC---C----eeeeeeecccceEEE----------
Confidence 345455444 4556799999999999999999999999999873 1 122222334456666
Q ss_pred cccccccccccccccccccCCCCEEEEEeCCCeEEEEECCCC
Q 000450 81 GKAEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSG 122 (1496)
Q Consensus 81 g~~~~~~~~~~~~~~g~~s~d~~~LaSas~DG~l~VWdv~~G 122 (1496)
+.|++..++.|++-|+|.+||+.-.
T Consensus 307 -----------------WHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 307 -----------------WHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred -----------------EcCCCcEEEEEcCCceEEEEEeecC
Confidence 5778999999999999999998644
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.011 Score=68.01 Aligned_cols=171 Identities=15% Similarity=0.195 Sum_probs=112.9
Q ss_pred ccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000450 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1496)
Q Consensus 506 ~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~ 585 (1496)
..|+-.|.++.+.++.. .+++ ..|=.|.+|.+.... ...+.-|+ ++. .+..-+.-|++-.|||.+
T Consensus 161 NaHtyhiNSIS~NsD~E----t~lS-ADdLRINLWnlei~d---~sFnIVDI---KP~-nmEeLteVITsaEFhp~~--- 225 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKE----TFLS-ADDLRINLWNLEIID---QSFNIVDI---KPA-NMEELTEVITSAEFHPHH--- 225 (433)
T ss_pred ccceeEeeeeeecCccc----eEee-ccceeeeeccccccC---CceeEEEc---ccc-CHHHHHHHHhhhccCHhH---
Confidence 35777888988777765 4443 455555564333111 01111111 110 011123457888999974
Q ss_pred ccCcCCCEEEEEeCCCcEEEEECCCCceE----------------EEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCC
Q 000450 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLI----------------TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 649 (1496)
Q Consensus 586 ~~~~~~~~L~SGs~DgtV~lWDl~tg~~l----------------~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~Dg 649 (1496)
..+++=.+..|+|++-|++...+. .-|..-...|..+.|++. |+++++-+. -
T Consensus 226 -----cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~s------GryilsRDy-l 293 (433)
T KOG1354|consen 226 -----CNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHS------GRYILSRDY-L 293 (433)
T ss_pred -----ccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccC------CcEEEEecc-c
Confidence 678888888999999999843211 112223456889999998 899988743 6
Q ss_pred cEEEEEC-CCCcEEEEecCCCC------------Cc---EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 650 SVALASL-ETLRVERMFPGHPN------------YP---AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 650 sV~lWdl-~~~~~l~~~~gH~~------------~V---~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
+|++||+ ...+++.+++-|.. .| ..++|+.++.+++||+.. +..++++...|..
T Consensus 294 tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~--------n~frvf~~~~gsk 363 (433)
T KOG1354|consen 294 TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYN--------NVFRVFNLARGSK 363 (433)
T ss_pred eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEeccccc--------ceEEEecCCCCcc
Confidence 8999999 67788888877642 22 568999999999999988 8999999766653
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0054 Score=69.81 Aligned_cols=114 Identities=12% Similarity=-0.003 Sum_probs=88.5
Q ss_pred EEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEE
Q 000450 576 LAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 655 (1496)
Q Consensus 576 La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWd 655 (1496)
..|+|+ ++++++.+.- .+.|-|.++.+..+.|.. -..|.-+.|.-|. -.+++....|+.|.+|+
T Consensus 14 c~fSp~---------g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads-----~~ilC~~yk~~~vqvws 77 (447)
T KOG4497|consen 14 CSFSPC---------GNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADS-----CHILCVAYKDPKVQVWS 77 (447)
T ss_pred eeECCC---------CCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccc-----eeeeeeeeccceEEEEE
Confidence 367887 8999999865 788899888776555544 3467778888773 45677778899999999
Q ss_pred CCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEE
Q 000450 656 LETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1496)
Q Consensus 656 l~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~ 712 (1496)
+...+--..+....+++.+++|||||+.++..+.- +-.|.||.+.|.+..
T Consensus 78 l~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF-------~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 78 LVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEF-------DLRITVWSLNTQKGY 127 (447)
T ss_pred eecceeEEEeccCCCcceeeeECCCcceEeeeecc-------eeEEEEEEeccceeE
Confidence 98877777777777889999999999766654442 178999999887653
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.39 E-value=1.4 Score=51.93 Aligned_cols=247 Identities=16% Similarity=0.186 Sum_probs=130.6
Q ss_pred EEEEEeC----CCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccccccccccccCCCCEE
Q 000450 30 TLYTGGS----DGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGAL 105 (1496)
Q Consensus 30 ~LaTGs~----DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g~~s~d~~~L 105 (1496)
.++.|+. +..|.+|++++. .++..... +..+.+..+-|+ +++++++|
T Consensus 4 ~~YiGtyT~~~s~gI~v~~ld~~-~g~l~~~~-~v~~~~nptyl~---------------------------~~~~~~~L 54 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNLDTK-TGELSLLQ-LVAELGNPTYLA---------------------------VNPDQRHL 54 (346)
T ss_pred EEEEeeecccCCCceEEEEEeCc-ccccchhh-hccccCCCceEE---------------------------ECCCCCEE
Confidence 4555543 567999999842 22232222 345667777887 67888889
Q ss_pred EEEeC---CCeEEEEECC--CCeEEEe--ecCCCCCCCCcEEEEcCCCCeEEEEcccccccCCccccccccccccccccc
Q 000450 106 ISACT---DGVLCVWSRS--SGHCRRR--RKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSE 178 (1496)
Q Consensus 106 aSas~---DG~l~VWdv~--~G~ci~~--~~l~~~~g~~~~i~~~s~~~~ll~~G~~~id~~~l~~~~~~~~v~~~~~~~ 178 (1496)
.++-+ +|.+..+.++ +|++-.. ..++ |.|.+-..+.++++++.++.|.
T Consensus 55 Y~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~---g~~p~yvsvd~~g~~vf~AnY~---------------------- 109 (346)
T COG2706 55 YVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP---GSPPCYVSVDEDGRFVFVANYH---------------------- 109 (346)
T ss_pred EEEEecCCcCcEEEEEEcCCCCeEEEeeccccC---CCCCeEEEECCCCCEEEEEEcc----------------------
Confidence 88755 4677776665 4765433 3444 7776667888999888877761
Q ss_pred ccCCCCCCCCccEEEEEECCc-e---EEEEEEecC------ccccCCeEEEEEeeccCCCCceeEEEE-eCCCcEEEEEC
Q 000450 179 DKEVPMKNPPKCTLVIVDTYG-L---TIVQTVFHG------NLSIGPWKFMDVVSLGEDMGKHYGLMV-DSVGRLQLVPI 247 (1496)
Q Consensus 179 d~~~~~~~~~~~~I~v~D~~t-~---~~l~~l~~~------~~s~~~i~~l~~s~~~~d~~~~~llva-s~dG~V~lWdl 247 (1496)
.+.|.++-..+ + ..++.+.+. +.....+.+..|. |+++ .+++. -..-+|.++++
T Consensus 110 ----------~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t---P~~~--~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 110 ----------SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT---PDGR--YLVVPDLGTDRIFLYDL 174 (346)
T ss_pred ----------CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC---CCCC--EEEEeecCCceEEEEEc
Confidence 14444443332 1 112222221 1011113444444 5655 23333 33447889999
Q ss_pred CCCCccccccCCCcccCCCccceeeeccCcccCceEEEEecCCcEEEEE--eCCeEEEEEcCCCcccceeeeecceeEee
Q 000450 248 SKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALV--LKDHCIFRLLGSGSTIGEICFVDNLFCLE 325 (1496)
Q Consensus 248 ~~~~~~~~~~~~~l~~~ek~i~~v~~~~~~~~~~~~va~s~dg~~l~t~--~~~~~~~~l~d~~~~ige~~~~~~~l~~~ 325 (1496)
+.+.+. . ..+. .+ . ...+-+-|.|.|+|++.-++ ..+...++-++.. .+++.-...+.+..
T Consensus 175 ~dg~L~----~--~~~~--~v-----~--~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~--~g~~~~lQ~i~tlP 237 (346)
T COG2706 175 DDGKLT----P--ADPA--EV-----K--PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA--VGKFEELQTIDTLP 237 (346)
T ss_pred ccCccc----c--cccc--cc-----C--CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC--CceEEEeeeeccCc
Confidence 865310 0 0000 01 1 22455889999999876554 4566566444543 34443222222222
Q ss_pred CCCCCceeeeeEEeechhhhhhcccccccccccceEEEEcCCCc--EEEEEEecC
Q 000450 326 GGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGS--AIVYAISYM 378 (1496)
Q Consensus 326 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~G~--~~l~~l~~~ 378 (1496)
..-.+..+....-+.. +++|+..+..|. +.+|.+...
T Consensus 238 ~dF~g~~~~aaIhis~----------------dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 238 EDFTGTNWAAAIHISP----------------DGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred cccCCCCceeEEEECC----------------CCCEEEEecCCCCeEEEEEEcCC
Confidence 3333334445544444 346766666654 444555433
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.18 Score=60.32 Aligned_cols=146 Identities=13% Similarity=0.124 Sum_probs=107.1
Q ss_pred cCCccEEEEEeeccccccCCEEEEEEcCC-cEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCc
Q 000450 507 HKEKIVSSSMVISESFYAPYAIVYGFFSG-EIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1496)
Q Consensus 507 ~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG-~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~ 585 (1496)
+|.+.|.-..+..+. ..++.|..|| .+.|+..+ +++ ...+.+.-+.|.++..+++
T Consensus 357 ~~~~~VrY~r~~~~~----e~~vigt~dgD~l~iyd~~---------------~~e-~kr~e~~lg~I~av~vs~d---- 412 (668)
T COG4946 357 GKKGGVRYRRIQVDP----EGDVIGTNDGDKLGIYDKD---------------GGE-VKRIEKDLGNIEAVKVSPD---- 412 (668)
T ss_pred CCCCceEEEEEccCC----cceEEeccCCceEEEEecC---------------Cce-EEEeeCCccceEEEEEcCC----
Confidence 455666665544333 3799999999 66673332 333 3556666788999999997
Q ss_pred ccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCC----CcEEEEECCCCcE
Q 000450 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED----FSVALASLETLRV 661 (1496)
Q Consensus 586 ~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~D----gsV~lWdl~~~~~ 661 (1496)
+..++.+...+.+-+.|+.+|+....=+...+-|+...|+|+ ++.+|-+--+ ..|+++|+.+++.
T Consensus 413 -----GK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n------sr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 413 -----GKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN------SRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred -----CcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC------ceeEEEecCcceeeeeEEEEecCCCeE
Confidence 899999988889999999999977666667788999999999 8888876555 4789999998886
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEE
Q 000450 662 ERMFPGHPNYPAKVVWDCPRGYIACLC 688 (1496)
Q Consensus 662 l~~~~gH~~~V~~V~~spdg~~L~tgs 688 (1496)
...-. ..+.=.+-+|.||+++|.-.+
T Consensus 482 y~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 482 YDVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEecC-CcccccCcccCCCCcEEEEEe
Confidence 54432 122223568999999887654
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0038 Score=78.23 Aligned_cols=131 Identities=21% Similarity=0.204 Sum_probs=100.5
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCC
Q 000450 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1496)
Q Consensus 561 ~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~ 640 (1496)
++.+++..|+...+|++|+-+ .++|+.|+..|.|+++++.+|.......+|..+|+-+.=+.+ |.
T Consensus 1092 r~w~~frd~~~~fTc~afs~~---------~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~d------gs 1156 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGG---------TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVD------GS 1156 (1516)
T ss_pred ccchhhhccccceeeEEeecC---------CceEEeeeccceEEEEEccCccccccccccccccccccccCC------cc
Confidence 455677889999999999976 789999999999999999999999999999999999887777 66
Q ss_pred EEEEEeC-CC-cEEEEECC-CCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE-Ee
Q 000450 641 CFLSVGE-DF-SVALASLE-TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV-LR 716 (1496)
Q Consensus 641 ~l~Sgs~-Dg-sV~lWdl~-~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~-l~ 716 (1496)
..++.+. .. -..+|++. .+...++|.+ -.+++|+..-.+-+.|+.- ....|||++|+..+.+ ++
T Consensus 1157 ~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~--------d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEA--------DDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred eeeeeccccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccc--------cceEEEecccCcHHHHhcC
Confidence 5554443 33 57899985 3555566543 3478898765555555554 4789999999987666 44
Q ss_pred CC
Q 000450 717 GT 718 (1496)
Q Consensus 717 gh 718 (1496)
+.
T Consensus 1225 ~~ 1226 (1516)
T KOG1832|consen 1225 DT 1226 (1516)
T ss_pred cc
Confidence 43
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0049 Score=69.51 Aligned_cols=129 Identities=16% Similarity=0.226 Sum_probs=91.9
Q ss_pred ecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCce---EEEEccc-----CCCEEEEEECCCCCCCCC
Q 000450 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL---ITVMHHH-----VAPVRQIILSPPQTEHPW 638 (1496)
Q Consensus 567 ~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~---l~~~~~H-----~~~V~~l~~sPd~~~~~~ 638 (1496)
..|.--++++.|+.| .+.++|+ .|-.|.+|++..... +..++.| +.-|++..|+|..
T Consensus 169 NaH~yhiNSiS~NsD---------~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~----- 233 (460)
T COG5170 169 NAHPYHINSISFNSD---------KETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM----- 233 (460)
T ss_pred ccceeEeeeeeecCc---------hheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH-----
Confidence 567778999999886 6777776 588999999875431 2233333 3457888999985
Q ss_pred CCEEEEEeCCCcEEEEECCCCcE-E---EE------------ecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEE
Q 000450 639 SDCFLSVGEDFSVALASLETLRV-E---RM------------FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLF 702 (1496)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~~~~~-l---~~------------~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~ 702 (1496)
...|.-.+..|.|++-|++.... . .. |.+-...|..+.|++.|+|+++-.. -+|+
T Consensus 234 cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy---------ltvk 304 (460)
T COG5170 234 CNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY---------LTVK 304 (460)
T ss_pred cceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc---------ceEE
Confidence 56788888899999999983211 0 11 1222346788999999999987655 4999
Q ss_pred EEECCCC-eEEEEEeCCC
Q 000450 703 IWDVKTG-ARERVLRGTA 719 (1496)
Q Consensus 703 VWDl~tg-~~~~~l~gh~ 719 (1496)
|||+... .++.++.-|.
T Consensus 305 iwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 305 IWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred EEecccccCCceeechHH
Confidence 9999764 5677766554
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.19 Score=60.42 Aligned_cols=103 Identities=11% Similarity=0.028 Sum_probs=80.6
Q ss_pred CcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEE-EEe---------CCCcEEEEECCCCcEEEEecCCC-
Q 000450 601 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFL-SVG---------EDFSVALASLETLRVERMFPGHP- 669 (1496)
Q Consensus 601 gtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~-Sgs---------~DgsV~lWdl~~~~~l~~~~gH~- 669 (1496)
++|.+.|..+++.+..+..-..+-. + ++|| ++.+. +.+ .+..|.+||..+++.+..++.-.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spD------g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASD------GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG 98 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCC------CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence 8899999999999888876544433 4 9999 66544 444 58899999999999998886422
Q ss_pred ------CCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 670 ------NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 670 ------~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
.....++++|||++|++...+ .+..|.|.|+.+++.+.++.-
T Consensus 99 p~~~~~~~~~~~~ls~dgk~l~V~n~~------p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 99 PRFLVGTYPWMTSLTPDNKTLLFYQFS------PSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred chhhccCccceEEECCCCCEEEEecCC------CCCEEEEEECCCCcEEEEEeC
Confidence 234578999999999987643 238999999999999988765
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.09 Score=58.94 Aligned_cols=146 Identities=13% Similarity=0.047 Sum_probs=95.5
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcc-eEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV-SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~-~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~l 605 (1496)
.|+.|+..|...+|... +.+ ..+....|...|+-+.=..+. .--+.-++.|.++++
T Consensus 86 ~la~gG~~g~fd~~~~~---------------tn~~h~~~cd~snn~v~~~~r~cd~--------~~~~~i~sndht~k~ 142 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACN---------------TNDGHLYQCDVSNNDVTLVKRYCDL--------KFPLNIASNDHTGKT 142 (344)
T ss_pred EEEeccccceeeeeccc---------------Ccccceeeecccccchhhhhhhccc--------ccceeeccCCcceeE
Confidence 78889899999984332 111 122223344444322211120 234566789999999
Q ss_pred EECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-cE-EEEe-cCCCCCcEEEEEcCCCC
Q 000450 606 WDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RV-ERMF-PGHPNYPAKVVWDCPRG 682 (1496)
Q Consensus 606 WDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~-~~-l~~~-~gH~~~V~~V~~spdg~ 682 (1496)
.++.-+..........-.+.++.++++ +...++++....|-.|.+... +. +... ....+.=.+..|+....
T Consensus 143 ~~~~~~s~~~~~h~~~~~~ns~~~snd------~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~ 216 (344)
T KOG4532|consen 143 MVVSGDSNKFAVHNQNLTQNSLHYSND------PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL 216 (344)
T ss_pred EEEecCcccceeeccccceeeeEEcCC------CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc
Confidence 998755433222222123788999999 899999999999999998643 22 2312 22233346789999999
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEECCCC
Q 000450 683 YIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 683 ~L~tgs~D~sg~~D~dg~V~VWDl~tg 709 (1496)
.++++..| |++.|||++.-
T Consensus 217 ~FAv~~Qd--------g~~~I~DVR~~ 235 (344)
T KOG4532|consen 217 QFAVVFQD--------GTCAIYDVRNM 235 (344)
T ss_pred eEEEEecC--------CcEEEEEeccc
Confidence 99999999 99999999863
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.013 Score=68.66 Aligned_cols=94 Identities=13% Similarity=0.153 Sum_probs=77.0
Q ss_pred EEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCC
Q 000450 603 IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRG 682 (1496)
Q Consensus 603 V~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~ 682 (1496)
|++.+-.+.+....+..|...|..++|+|.. ..++..++.+..|+|.|+++..++.++..| ..+++++|.-|+.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~-----~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFN-----EGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDER 248 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccc-----cceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCc
Confidence 6666666666566777888999999999983 337889999999999999999999999888 7899999987765
Q ss_pred -EEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 683 -YIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 683 -~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
+|..|-.+ |.|+|||++.-+
T Consensus 249 h~IYaGl~n--------G~VlvyD~R~~~ 269 (463)
T KOG1645|consen 249 HVIYAGLQN--------GMVLVYDMRQPE 269 (463)
T ss_pred ceeEEeccC--------ceEEEEEccCCC
Confidence 66666665 999999998643
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.47 Score=58.96 Aligned_cols=122 Identities=11% Similarity=0.077 Sum_probs=81.0
Q ss_pred cEEEEEEecCCCCcccCcCCC-EEEEEeC---CCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEE-EEEe
Q 000450 572 AVLCLAAHRMVGTAKGWSFNE-VLVSGSM---DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF-LSVG 646 (1496)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~-~L~SGs~---DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l-~Sgs 646 (1496)
......|+|| ++ .++-.+. +..|.++|+.+|+...... ..+......|+|| |+.+ ++.+
T Consensus 189 ~~~~p~wSpD---------G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPD------G~~la~~~~ 252 (419)
T PRK04043 189 LNIFPKWANK---------EQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKD------GSKLLLTMA 252 (419)
T ss_pred CeEeEEECCC---------CCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCC------CCEEEEEEc
Confidence 6778899998 55 3553333 3579999999887654433 4556677889999 6644 4444
Q ss_pred CC--CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 647 ED--FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 647 ~D--gsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
.+ ..|.++|+.+++..+ +..+........|+|||+.|+..+.. .+...|++.|+.+|+..+..
T Consensus 253 ~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr-----~g~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 253 PKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDR-----LGYPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred cCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEECC-----CCCceEEEEECCCCCeEeCc
Confidence 34 567778888876543 33333323456899999988876643 11147999999988875544
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.18 Score=56.89 Aligned_cols=112 Identities=13% Similarity=-0.023 Sum_probs=79.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEE-EEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEe-cCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQ-IILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF-PGH 668 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~-l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~-~gH 668 (1496)
+..++.++.++.+..||..+|+.+..+.... ++.. ... . +..++.++.|+.+..+|.++|+.+... ...
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~~~--~------~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~ 106 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAPVV--D------GGRVYVGTSDGSLYALDAKTGKVLWSIYLTS 106 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGEEE--E------TTEEEEEETTSEEEEEETTTSCEEEEEEE-S
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEeeccc-cccceeee--c------ccccccccceeeeEecccCCcceeeeecccc
Confidence 5677777899999999999999988776522 2111 111 2 456777778899999999999998774 322
Q ss_pred CC---CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCC
Q 000450 669 PN---YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1496)
Q Consensus 669 ~~---~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~ 719 (1496)
.. .........+++.+++++.+ +.|+.+|+++|+.+.....+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~--------g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 107 SPPAGVRSSSSPAVDGDRLYVGTSS--------GKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp SCTCSTB--SEEEEETTEEEEEETC--------SEEEEEETTTTEEEEEEESST
T ss_pred ccccccccccCceEecCEEEEEecc--------CcEEEEecCCCcEEEEeecCC
Confidence 11 11222233347888888877 999999999999988887744
|
... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=1.4 Score=54.85 Aligned_cols=129 Identities=12% Similarity=0.102 Sum_probs=79.3
Q ss_pred CCccEEEEEEecCCCCcccCcCCC-EEEEEeCC--CcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEE
Q 000450 569 HTGAVLCLAAHRMVGTAKGWSFNE-VLVSGSMD--CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1496)
Q Consensus 569 H~~~V~~La~spd~~~~~~~~~~~-~L~SGs~D--gtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sg 645 (1496)
..+.+....|+|| ++ ++++.+.+ ..|.++|+.+++. ..+..+.+......|+|| |+.++-.
T Consensus 231 ~~g~~~~~~~SPD---------G~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPD------G~~I~F~ 294 (419)
T PRK04043 231 SQGMLVVSDVSKD---------GSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVED------DKRIVFV 294 (419)
T ss_pred CCCcEEeeEECCC---------CCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCC------CCEEEEE
Confidence 4555667889998 54 55555444 4677788887764 444444433345679999 7766555
Q ss_pred eC-CC--cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCC-CCCCEEEEEECCCCeEEEEEeC
Q 000450 646 GE-DF--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTS-DAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 646 s~-Dg--sV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~-D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
+. .+ .|.++|+.+++..+.... ... ...|+|||++|+..+..-.... .+...|++.|+.+|+. +.++.
T Consensus 295 Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~ 366 (419)
T PRK04043 295 SDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTA 366 (419)
T ss_pred ECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCC
Confidence 43 23 677888888877443321 111 2489999999987765410000 0114789999988865 44443
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.02 Score=43.05 Aligned_cols=38 Identities=34% Similarity=0.478 Sum_probs=33.5
Q ss_pred ceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEE
Q 000450 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1496)
Q Consensus 561 ~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWD 607 (1496)
++...+..|...|+++.|++. +..+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPD---------GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCC---------CCEEEEecCCCeEEEcC
Confidence 456677889999999999986 68999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.1 Score=66.87 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=78.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC---------CCcEEEEECCCCcE
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE---------DFSVALASLETLRV 661 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~---------DgsV~lWdl~~~~~ 661 (1496)
++.+..|...|+|.+-|.++.+.+++|..|++.|..+... |+.++++|. |..|+|||++..+.
T Consensus 187 nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--------GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra 258 (1118)
T KOG1275|consen 187 NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--------GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA 258 (1118)
T ss_pred CcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc--------CCeEEEeecccccccccccchhhhhhhhhhhc
Confidence 6899999999999999999999999999999999887764 678888864 77899999999887
Q ss_pred EEEecCCCCCcEEEEEcCCC-CEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 662 ERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 662 l~~~~gH~~~V~~V~~spdg-~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
+.-+.-+.+ ..-+.|+|.- ..+++.+.. |...+-|.
T Consensus 259 l~PI~~~~~-P~flrf~Psl~t~~~V~S~s--------Gq~q~vd~ 295 (1118)
T KOG1275|consen 259 LSPIQFPYG-PQFLRFHPSLTTRLAVTSQS--------GQFQFVDT 295 (1118)
T ss_pred cCCcccccC-chhhhhcccccceEEEEecc--------cceeeccc
Confidence 765554444 3557788853 355666655 78888774
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.021 Score=42.81 Aligned_cols=39 Identities=21% Similarity=0.401 Sum_probs=34.3
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEE
Q 000450 659 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 659 ~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWD 705 (1496)
++++..+..|...|.++.|.+++.++++++.| +.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d--------~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDD--------GTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCC--------CeEEEcC
Confidence 45667777899999999999999999999998 9999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.1 Score=50.33 Aligned_cols=103 Identities=18% Similarity=0.113 Sum_probs=72.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCCC----------E-EEEEECCCCCCCCCCCEEEEEeCCCc-EEEEECCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP----------V-RQIILSPPQTEHPWSDCFLSVGEDFS-VALASLET 658 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~----------V-~~l~~sPd~~~~~~g~~l~Sgs~Dgs-V~lWdl~~ 658 (1496)
+..++.+..++.|..+|+++|+.+.....+..+ + ..+.+. + + .+..++.++. +.+ |+.+
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~-~v~~~~~~g~~~~~-d~~t 192 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-D------G-RVYVSSGDGRVVAV-DLAT 192 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-T------T-EEEEECCTSSEEEE-ETTT
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-C------C-EEEEEcCCCeEEEE-ECCC
Confidence 577788888999999999999998887764432 1 222222 3 4 6666666775 666 9999
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 659 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 659 ~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
++.+-... ...+.. ...+++..|++++.+ +.|+.||++||+..-
T Consensus 193 g~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~--------~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 193 GEKLWSKP--ISGIYS-LPSVDGGTLYVTSSD--------GRLYALDLKTGKVVW 236 (238)
T ss_dssp TEEEEEEC--SS-ECE-CEECCCTEEEEEETT--------TEEEEEETTTTEEEE
T ss_pred CCEEEEec--CCCccC-CceeeCCEEEEEeCC--------CEEEEEECCCCCEEe
Confidence 99665433 222222 145678888888877 999999999999764
|
... |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.055 Score=65.70 Aligned_cols=111 Identities=17% Similarity=0.189 Sum_probs=87.3
Q ss_pred EEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeC------
Q 000450 574 LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE------ 647 (1496)
Q Consensus 574 ~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~------ 647 (1496)
+-+.|+|. |.+|+|--.-| |.+|-=.+...++.|. |. .|.-+.|||. .++|+|=|.
T Consensus 214 tyv~wSP~---------GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~------EkYLVT~s~~p~~~~ 275 (698)
T KOG2314|consen 214 TYVRWSPK---------GTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPN------EKYLVTYSPEPIIVE 275 (698)
T ss_pred eeEEecCC---------ceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCc------cceEEEecCCccccC
Confidence 56789997 89999987665 8899887777788884 55 4899999998 788888542
Q ss_pred -----CCcEEEEECCCCcEEEEecCCCC--Cc-EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 648 -----DFSVALASLETLRVERMFPGHPN--YP-AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 648 -----DgsV~lWdl~~~~~l~~~~gH~~--~V-~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
-..++|||+.+|...+.|+.-.. .+ .-..||.|++|++.-..| +|.|++..+..+
T Consensus 276 ~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~---------sisIyEtpsf~l 338 (698)
T KOG2314|consen 276 EDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN---------SISIYETPSFML 338 (698)
T ss_pred cccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc---------eEEEEecCceee
Confidence 26899999999999998875322 22 346899999999987765 899999876444
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=95.70 E-value=14 Score=50.62 Aligned_cols=81 Identities=21% Similarity=0.294 Sum_probs=61.1
Q ss_pred eEecCCC---CCCceEEEEEEcCCCCEEEEEeCCCcEEEE----EccCCCCCceeeeEEeeccccceeEeeecccccccc
Q 000450 7 ACIWSGT---PPSHRVTATSALTQPPTLYTGGSDGSILWW----SFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSR 79 (1496)
Q Consensus 7 ~~lw~~~---~psh~Vtava~SpDg~~LaTGs~DG~I~lW----dl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~ 79 (1496)
.+=|... .+...|.++.+.+|...|+.+.++|.|.+. |... .....+. --..+|.|.+
T Consensus 63 l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~---~~~E~VG---~vd~GI~a~~--------- 127 (928)
T PF04762_consen 63 LASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE---DEIEIVG---SVDSGILAAS--------- 127 (928)
T ss_pred EEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC---ceeEEEE---EEcCcEEEEE---------
Confidence 3346544 456789999999999999999999999999 5442 2233222 2345788888
Q ss_pred CcccccccccccccccccccCCCCEEEEEeCCCeEEEEECC
Q 000450 80 DGKAEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRS 120 (1496)
Q Consensus 80 dg~~~~~~~~~~~~~~g~~s~d~~~LaSas~DG~l~VWdv~ 120 (1496)
+|||+..|+-++.+|+|.+-+.+
T Consensus 128 ------------------WSPD~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 128 ------------------WSPDEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred ------------------ECCCcCEEEEEeCCCEEEEEecc
Confidence 68999999999999999887643
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.1 Score=62.11 Aligned_cols=207 Identities=16% Similarity=0.143 Sum_probs=126.1
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccceeEeeeccccccccCcccccccccccccccc
Q 000450 17 HRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMG 96 (1496)
Q Consensus 17 h~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g 96 (1496)
.-|+.+..+-- +++.+++.||.++.|--... .-..-+..+..|-+.|..|+
T Consensus 10 d~i~hv~~tka-~fiiqASlDGh~KFWkKs~i--sGvEfVKhFraHL~~I~sl~-------------------------- 60 (558)
T KOG0882|consen 10 DVITHVFPTKA-KFIIQASLDGHKKFWKKSRI--SGVEFVKHFRAHLGVILSLA-------------------------- 60 (558)
T ss_pred ceeeeEeeehh-heEEeeecchhhhhcCCCCc--cceeehhhhHHHHHHHHhhh--------------------------
Confidence 34777776644 79999999999999987621 11233444567888888886
Q ss_pred cccCCCCEEEEEeC-CCeEEEEECCCCeEEEeecCCCCCCCCcEEEEcCCCC---eEEEEcccccccCCccccccccccc
Q 000450 97 KSSLDNGALISACT-DGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNP---RYVCIGCCFIDTNQLSDHHSFESVE 172 (1496)
Q Consensus 97 ~~s~d~~~LaSas~-DG~l~VWdv~~G~ci~~~~l~~~~g~~~~i~~~s~~~---~ll~~G~~~id~~~l~~~~~~~~v~ 172 (1496)
.+-|+..+.|.+. |..+++.|+.+-..+.-.++. .-|..+.-....+ .+++++.. +
T Consensus 61 -~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~---~lPg~a~wv~skGd~~s~IAVs~~--~-------------- 120 (558)
T KOG0882|consen 61 -VSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV---DLPGFAEWVTSKGDKISLIAVSLF--K-------------- 120 (558)
T ss_pred -ccccceeEeeccCcccceeEEEeeccchhhhcccc---cCCCceEEecCCCCeeeeEEeecc--c--------------
Confidence 5677888999888 999999999877666555665 4455554333222 35555543 0
Q ss_pred ccccccccCCCCCCCCccEEEEEECCceEEEEEEecCccccCCeEEEEEeeccCCCCceeEEEEeCCCcEEEEECCCCCc
Q 000450 173 GDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESH 252 (1496)
Q Consensus 173 ~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~~~~s~~~i~~l~~s~~~~d~~~~~llvas~dG~V~lWdl~~~~~ 252 (1496)
.+.|.++|.+..-.-...+- ..+-.+|..+-+.+.. +..+..+..|+|+-|..+..
T Consensus 121 ----------------sg~i~VvD~~~d~~q~~~fk-klH~sPV~~i~y~qa~-----Ds~vSiD~~gmVEyWs~e~~-- 176 (558)
T KOG0882|consen 121 ----------------SGKIFVVDGFGDFCQDGYFK-KLHFSPVKKIRYNQAG-----DSAVSIDISGMVEYWSAEGP-- 176 (558)
T ss_pred ----------------CCCcEEECCcCCcCccceec-ccccCceEEEEeeccc-----cceeeccccceeEeecCCCc--
Confidence 26677787775442222222 2333457777777543 33555588999999998742
Q ss_pred cccccCCCc--ccCC-CccceeeeccCcccCceEEEEecCCcEEEEEeCCe
Q 000450 253 LDREEGNGL--CKSS-SQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDH 300 (1496)
Q Consensus 253 ~~~~~~~~l--~~~e-k~i~~v~~~~~~~~~~~~va~s~dg~~l~t~~~~~ 300 (1496)
.+..+..-. +++| ...+..++. ....++.|+|+|..+.+.+.++
T Consensus 177 ~qfPr~~l~~~~K~eTdLy~f~K~K----t~pts~Efsp~g~qistl~~Dr 223 (558)
T KOG0882|consen 177 FQFPRTNLNFELKHETDLYGFPKAK----TEPTSFEFSPDGAQISTLNPDR 223 (558)
T ss_pred ccCccccccccccccchhhcccccc----cCccceEEccccCcccccCccc
Confidence 001111111 1111 111111111 2235788999999999988765
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.0085 Score=75.34 Aligned_cols=162 Identities=16% Similarity=0.192 Sum_probs=109.0
Q ss_pred ccccCCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCC
Q 000450 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1496)
Q Consensus 504 ~~~~h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~ 583 (1496)
+|..|...-+|.++..... .++.|+..|.|++++ +.+|.-.....+|..+|+-+.-+-+
T Consensus 1096 ~frd~~~~fTc~afs~~~~----hL~vG~~~Geik~~n---------------v~sG~~e~s~ncH~SavT~vePs~d-- 1154 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTN----HLAVGSHAGEIKIFN---------------VSSGSMEESVNCHQSAVTLVEPSVD-- 1154 (1516)
T ss_pred hhhccccceeeEEeecCCc----eEEeeeccceEEEEE---------------ccCccccccccccccccccccccCC--
Confidence 3566777888888665554 899999999999944 3456666777899999998876655
Q ss_pred CcccCcCCCE-EEEEeCCC-cEEEEECC-CCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCc
Q 000450 584 TAKGWSFNEV-LVSGSMDC-SIRIWDLG-SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1496)
Q Consensus 584 ~~~~~~~~~~-L~SGs~Dg-tV~lWDl~-tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~ 660 (1496)
+.. |.+.+... -..+|++. ++...|+|... .++.|+... ...++.. .-..+.+||++++.
T Consensus 1155 -------gs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed----~~vkFsn~~-----q~r~~gt-~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1155 -------GSTQLTSSSSSSPLSALWDASSTGGPRHSFDED----KAVKFSNSL-----QFRALGT-EADDALLYDVQTCS 1217 (1516)
T ss_pred -------cceeeeeccccCchHHHhccccccCcccccccc----ceeehhhhH-----HHHHhcc-cccceEEEecccCc
Confidence 444 44443333 57799986 46667777653 457776541 2223333 23458899999998
Q ss_pred EEEEe-cCC---CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 661 VERMF-PGH---PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 661 ~l~~~-~gH---~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
++.++ .+- ...-+.+.|+|++..++ +| | .+||++..+.++.+.
T Consensus 1218 ~l~tylt~~~~~~y~~n~a~FsP~D~LIl---------nd--G--vLWDvR~~~aIh~FD 1264 (1516)
T KOG1832|consen 1218 PLQTYLTDTVTSSYSNNLAHFSPCDTLIL---------ND--G--VLWDVRIPEAIHRFD 1264 (1516)
T ss_pred HHHHhcCcchhhhhhccccccCCCcceEe---------eC--c--eeeeeccHHHHhhhh
Confidence 87663 321 12236789999998887 12 4 579998877666554
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.35 Score=59.06 Aligned_cols=107 Identities=13% Similarity=0.011 Sum_probs=72.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~ 670 (1496)
+..++.++.|+.+..+|..+|+.+....... .+. -+|- ..+..++.++.|+.+..||.++|+.+-.+.....
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~---~~p~----v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~ 176 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVL---SPPL----VANGLVVVRTNDGRLTALDAATGERLWTYSRVTP 176 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eee---cCCE----EECCEEEEECCCCeEEEEEcCCCceeeEEccCCC
Confidence 5677788889999999999999887665432 222 1121 0134677778899999999999998766643322
Q ss_pred Cc-----EEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 671 YP-----AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 671 ~V-----~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
.. ..... .+..++.+..+ +.++.+|.++|+.+...
T Consensus 177 ~~~~~~~~sp~~--~~~~v~~~~~~--------g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 177 ALTLRGSASPVI--ADGGVLVGFAG--------GKLVALDLQTGQPLWEQ 216 (377)
T ss_pred ceeecCCCCCEE--ECCEEEEECCC--------CEEEEEEccCCCEeeee
Confidence 11 01111 13467777776 89999999999876543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.064 Score=66.39 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=68.6
Q ss_pred CCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcE-EEEEcCCCCEEEEEEcCCCCCCCCCCE
Q 000450 622 APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPA-KVVWDCPRGYIACLCRDHSRTSDAVDV 700 (1496)
Q Consensus 622 ~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~-~V~~spdg~~L~tgs~D~sg~~D~dg~ 700 (1496)
..|..+.|+|. -..+|.+-.+|.|.+..+. .+.+-+++-|.-.++ +++|.|||+.|++|-.| |+
T Consensus 21 ~~i~~~ewnP~------~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kd--------G~ 85 (665)
T KOG4640|consen 21 INIKRIEWNPK------MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKD--------GT 85 (665)
T ss_pred cceEEEEEcCc------cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecC--------Ce
Confidence 35788999998 7899999999999999888 777788887777776 99999999999999999 99
Q ss_pred EEEEECCCCeEEEE
Q 000450 701 LFIWDVKTGARERV 714 (1496)
Q Consensus 701 V~VWDl~tg~~~~~ 714 (1496)
|++-|+++|..+..
T Consensus 86 I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 86 IRLHDVEKGGRLVS 99 (665)
T ss_pred EEEEEccCCCceec
Confidence 99999999887654
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=95.28 E-value=1.8 Score=49.76 Aligned_cols=85 Identities=25% Similarity=0.241 Sum_probs=53.2
Q ss_pred CCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCc---eeeeEEeec-cccceeEeeeccccccccCccccccc
Q 000450 12 GTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSE---IKPVAMLCG-HSAPIADLSICYPAMVSRDGKAEHWK 87 (1496)
Q Consensus 12 ~~~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~---~~~~~~L~G-Ht~~Vt~La~c~~~~~s~dg~~~~~~ 87 (1496)
++.|.-+=..+++|||+..||-+...|+|.++|+.. .+ +.|...+.| -+.+|..+.|+..- ...+|.
T Consensus 39 pkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g---~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~------~s~~ws 109 (282)
T PF15492_consen 39 PKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG---SELFVIPPAMSFPGDLSDAIAGLIFLEYK------KSAQWS 109 (282)
T ss_pred CCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc---ceeEEcCcccccCCccccceeeeEeeccc------cccccc
Confidence 344444567889999999999999999999999972 22 122111222 13466777653332 113444
Q ss_pred ccccccccccccCCCCEEEEEeCCCeEEEEECC
Q 000450 88 AENSSNVMGKSSLDNGALISACTDGVLCVWSRS 120 (1496)
Q Consensus 88 ~~~~~~~~g~~s~d~~~LaSas~DG~l~VWdv~ 120 (1496)
.+ |+.-..+|.++-.-+.
T Consensus 110 ~E---------------Llvi~Y~G~L~Sy~vs 127 (282)
T PF15492_consen 110 YE---------------LLVINYRGQLRSYLVS 127 (282)
T ss_pred ee---------------EEEEeccceeeeEEEE
Confidence 44 6677778888766654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.25 E-value=1 Score=57.99 Aligned_cols=127 Identities=14% Similarity=0.131 Sum_probs=87.5
Q ss_pred CccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECC----CCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEE
Q 000450 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG----SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1496)
Q Consensus 570 ~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~----tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sg 645 (1496)
..++.+++++.+ -..+|.|-.||.|.++.=+ .|....-...-..+|+.+.+.-+ +..++-+
T Consensus 125 ~~p~s~l~Vs~~---------l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d------~~s~lFv 189 (933)
T KOG2114|consen 125 PSPASSLAVSED---------LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD------GKSVLFV 189 (933)
T ss_pred CCcceEEEEEcc---------ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC------CceeEEE
Confidence 346888999886 6889999999999987522 12222222334579999999887 5553444
Q ss_pred eCCCcEEEEECCCCcE-EEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCC
Q 000450 646 GEDFSVALASLETLRV-ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR-GTAS 720 (1496)
Q Consensus 646 s~DgsV~lWdl~~~~~-l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~-gh~a 720 (1496)
..-..|.+|.+....+ +..+..|...+.|..+++...-+++++. .-+++||......-..+. ||..
T Consensus 190 ~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~---------e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 190 ATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS---------EFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred EecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC---------ceEEEEcCCCcceeeeecCCCeE
Confidence 5556799999984442 4556778888999999876664665554 479999987544444444 7774
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.027 Score=66.16 Aligned_cols=124 Identities=13% Similarity=0.051 Sum_probs=92.1
Q ss_pred cceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCC
Q 000450 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1496)
Q Consensus 560 ~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g 639 (1496)
.++.+.+.+|...|..++|+|.. ..++..++.+.+|+|.|+++......+..| ..+++++|.-++ .
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~--------~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde-----~ 248 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFN--------EGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDE-----R 248 (463)
T ss_pred cchhhcccccchhhhhhccCccc--------cceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCC-----c
Confidence 34455778888999999999962 458999999999999999999999999888 789999998885 7
Q ss_pred CEEEEEeCCCcEEEEECCCCcE-EEEecC--CCCCcEEE------EEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 640 DCFLSVGEDFSVALASLETLRV-ERMFPG--HPNYPAKV------VWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~~~~~-l~~~~g--H~~~V~~V------~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
+.+..|-..|.|.+||++..+- +..+.+ ...+|..+ +..+.|.+|+....+ +..|++.
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~----------l~f~ei~ 315 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV----------LQFYEIV 315 (463)
T ss_pred ceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh----------hhhhhhh
Confidence 7999999999999999986432 222221 12233332 334556777766654 5677664
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=95.16 E-value=4.5 Score=46.19 Aligned_cols=132 Identities=17% Similarity=0.147 Sum_probs=86.7
Q ss_pred CccEEEEEEecCCCCcccCcCCCEEEEEeCC--------CcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCE
Q 000450 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD--------CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1496)
Q Consensus 570 ~~~V~~La~spd~~~~~~~~~~~~L~SGs~D--------gtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~ 641 (1496)
....+.+++.++ +.+.++.... +.|..++.. ++.... ...-...+.++|+|+ ++.
T Consensus 85 ~~~~ND~~vd~~---------G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~-~~~~~~pNGi~~s~d------g~~ 147 (246)
T PF08450_consen 85 FNRPNDVAVDPD---------GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV-ADGLGFPNGIAFSPD------GKT 147 (246)
T ss_dssp TEEEEEEEE-TT---------S-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE-EEEESSEEEEEEETT------SSE
T ss_pred cCCCceEEEcCC---------CCEEEEecCCCccccccccceEEECCC-CeEEEE-ecCcccccceEECCc------chh
Confidence 356789999997 7877776644 457777776 554333 333456789999999 665
Q ss_pred E-EEEeCCCcEEEEECCCC-c------EEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEE
Q 000450 642 F-LSVGEDFSVALASLETL-R------VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 642 l-~Sgs~DgsV~lWdl~~~-~------~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~ 713 (1496)
| ++-+..+.|..+++... . ....+..-.+.+-.+++..+|++.++.... +.|.++|.+ |+++.
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~--------~~I~~~~p~-G~~~~ 218 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG--------GRIVVFDPD-GKLLR 218 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT--------TEEEEEETT-SCEEE
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC--------CEEEEECCC-ccEEE
Confidence 4 56677888999998532 1 222233333347889999999877665555 899999987 99888
Q ss_pred EEeCCCCCceeeee
Q 000450 714 VLRGTASHSMFDHF 727 (1496)
Q Consensus 714 ~l~gh~a~vi~~~~ 727 (1496)
.+.-.....+.+.|
T Consensus 219 ~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 219 EIELPVPRPTNCAF 232 (246)
T ss_dssp EEE-SSSSEEEEEE
T ss_pred EEcCCCCCEEEEEE
Confidence 87766444444433
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.16 E-value=1.9 Score=55.61 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=65.4
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccc-eeEeeeccccccccCcccccccccccccccccccCC
Q 000450 23 SALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAP-IADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLD 101 (1496)
Q Consensus 23 a~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~-Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~g~~s~d 101 (1496)
.+++.+..+|-|+.||.|.+.|-. .....-+..|... |+.|- ...+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s------~~~~~~fqa~~~siv~~L~---------------------------~~~~ 76 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS------FQLIRGFQAYEQSIVQFLY---------------------------ILNK 76 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc------ceeeehheecchhhhhHhh---------------------------cccC
Confidence 356788999999999999888765 3333444455555 44443 2334
Q ss_pred CCEEEEEeCCCe-----EEEEECCC------CeEE---Eee--cCCCCCCCCcEEEEcCCCCeEEEEccc
Q 000450 102 NGALISACTDGV-----LCVWSRSS------GHCR---RRR--KLPPWVGSPSVICTLPSNPRYVCIGCC 155 (1496)
Q Consensus 102 ~~~LaSas~DG~-----l~VWdv~~------G~ci---~~~--~l~~~~g~~~~i~~~s~~~~ll~~G~~ 155 (1496)
..+|+|.++|++ |+|||+.. .+|+ +.. +.| --..|..+.+.+.+-..++||..
T Consensus 77 ~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np-~~~~p~s~l~Vs~~l~~Iv~Gf~ 145 (933)
T KOG2114|consen 77 QNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNP-TNPSPASSLAVSEDLKTIVCGFT 145 (933)
T ss_pred ceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCC-CCCCcceEEEEEccccEEEEEec
Confidence 578999998875 89999872 4566 222 222 12356677788888778888864
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=94.68 E-value=1.5 Score=43.75 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=65.1
Q ss_pred EEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEE
Q 000450 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 652 (1496)
Q Consensus 573 V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~ 652 (1496)
|+++++..-. .++ ...|+.||.|..|++|+= .+.+..+.. +..|+++.-... ..|+.+-.+|+|.
T Consensus 2 V~al~~~d~d--~dg---~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-------~~F~Y~l~NGTVG 66 (111)
T PF14783_consen 2 VTALCLFDFD--GDG---ENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-------GRFAYALANGTVG 66 (111)
T ss_pred eeEEEEEecC--CCC---cceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-------CEEEEEecCCEEE
Confidence 6677765420 112 468999999999999983 467777765 456777776553 5799999999999
Q ss_pred EEECCCCcEEEEecCCCCCcEEEEEcC-C--C-CEEEEEEcC
Q 000450 653 LASLETLRVERMFPGHPNYPAKVVWDC-P--R-GYIACLCRD 690 (1496)
Q Consensus 653 lWdl~~~~~l~~~~gH~~~V~~V~~sp-d--g-~~L~tgs~D 690 (1496)
+|+-.. +.-+ ... ...+.++.+.. + | .-|++|-.+
T Consensus 67 vY~~~~-RlWR-iKS-K~~~~~~~~~D~~gdG~~eLI~Gwsn 105 (111)
T PF14783_consen 67 VYDRSQ-RLWR-IKS-KNQVTSMAFYDINGDGVPELIVGWSN 105 (111)
T ss_pred EEeCcc-eeee-ecc-CCCeEEEEEEcCCCCCceEEEEEecC
Confidence 997532 2222 222 22355665533 2 2 267888777
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=94.67 E-value=2.7 Score=49.47 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=82.0
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCC-----CcEEEEECC-CCceEEEEcccCCCEEEEEECCCCCCC
Q 000450 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD-----CSIRIWDLG-SGNLITVMHHHVAPVRQIILSPPQTEH 636 (1496)
Q Consensus 563 ~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~D-----gtV~lWDl~-tg~~l~~~~~H~~~V~~l~~sPd~~~~ 636 (1496)
-+.|+||. .|++| +++|.+.-+| |.|-|||.. +.+.+..|..|.-.-..+.+.||
T Consensus 49 gRHFyGHg------~fs~d---------G~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pD---- 109 (305)
T PF07433_consen 49 GRHFYGHG------VFSPD---------GRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPD---- 109 (305)
T ss_pred CCEEecCE------EEcCC---------CCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCC----
Confidence 35677883 67887 8888876544 789999998 66677778777666667777777
Q ss_pred CCCCEEEEE------------------eCCCcEEEEECCCCcEEEE--e-------------------------------
Q 000450 637 PWSDCFLSV------------------GEDFSVALASLETLRVERM--F------------------------------- 665 (1496)
Q Consensus 637 ~~g~~l~Sg------------------s~DgsV~lWdl~~~~~l~~--~------------------------------- 665 (1496)
|..|+.+ ..+-++.+.|..+|+.+.. +
T Consensus 110 --G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~ 187 (305)
T PF07433_consen 110 --GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPG 187 (305)
T ss_pred --CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCC
Confidence 4333332 1122333444444332211 1
Q ss_pred ------------------c-------CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 000450 666 ------------------P-------GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 666 ------------------~-------gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~ 716 (1496)
. .-.+++-+|++++++.++++.|-- -+.+.+||..+|+++....
T Consensus 188 ~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr-------Gg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 188 DAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR-------GGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred ccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC-------CCEEEEEECCCCCEeeccc
Confidence 0 112467888999999888776643 1799999999999877654
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.35 Score=55.16 Aligned_cols=83 Identities=16% Similarity=0.178 Sum_probs=55.9
Q ss_pred CCceEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCCCceeeeEEeeccccc------------eeEeeeccccccccCcc
Q 000450 15 PSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAP------------IADLSICYPAMVSRDGK 82 (1496)
Q Consensus 15 psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~------------Vt~La~c~~~~~s~dg~ 82 (1496)
....||+|-|...|.+|+||...|.|.++.-+-+.+-+.+-...+.+|... |..+.+|.+.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t------- 97 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT------- 97 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC-------
Confidence 346799999999999999999999999999873111112223345677543 4555543332
Q ss_pred cccccccccccccccccCCCCEEEEEeCCCeEEEEECCCC
Q 000450 83 AEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSG 122 (1496)
Q Consensus 83 ~~~~~~~~~~~~~g~~s~d~~~LaSas~DG~l~VWdv~~G 122 (1496)
....+.-.+.|.+|++|-+...
T Consensus 98 ------------------~r~hFLlstNdktiKlWKiyek 119 (460)
T COG5170 98 ------------------GRNHFLLSTNDKTIKLWKIYEK 119 (460)
T ss_pred ------------------CcceEEEecCCceeeeeeeecc
Confidence 1234555678999999998755
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.64 Score=59.35 Aligned_cols=142 Identities=14% Similarity=0.138 Sum_probs=95.9
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.+++++.||.+.|.... +.+...++ .-..++.+++++|+. .+...+.+++||.-| +.+.
T Consensus 85 y~asCS~DGkv~I~sl~---------------~~~~~~~~-df~rpiksial~Pd~----~~~~sk~fv~GG~ag-lvL~ 143 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLF---------------TDDEITQY-DFKRPIKSIALHPDF----SRQQSKQFVSGGMAG-LVLS 143 (846)
T ss_pred eEEEecCCCcEEEeecc---------------CCccceeE-ecCCcceeEEeccch----hhhhhhheeecCcce-EEEe
Confidence 89999999999984322 11112222 234578999999974 334467899999888 7776
Q ss_pred ECCCC-ceE-EEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC------CcEEEEEc
Q 000450 607 DLGSG-NLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN------YPAKVVWD 678 (1496)
Q Consensus 607 Dl~tg-~~l-~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~------~V~~V~~s 678 (1496)
.-.-. ... ..+..-.|+|.++.|. |+++|=++.+| |++||+.+++.+..++.... ....+.|.
T Consensus 144 er~wlgnk~~v~l~~~eG~I~~i~W~--------g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~ 214 (846)
T KOG2066|consen 144 ERNWLGNKDSVVLSEGEGPIHSIKWR--------GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ 214 (846)
T ss_pred hhhhhcCccceeeecCccceEEEEec--------CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec
Confidence 64321 111 2355667899999995 56888887666 99999998887766643222 34568898
Q ss_pred CCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 679 pdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
++.+ |+.|=. .+|+|..++.
T Consensus 215 ~~~~-LVIGW~---------d~v~i~~I~~ 234 (846)
T KOG2066|consen 215 DEDR-LVIGWG---------DSVKICSIKK 234 (846)
T ss_pred CCCe-EEEecC---------CeEEEEEEec
Confidence 7765 444443 3899998873
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=94.37 E-value=11 Score=43.49 Aligned_cols=128 Identities=14% Similarity=0.127 Sum_probs=85.9
Q ss_pred cEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEccc-------CCCEEEEEECCCCCCCCCCCEEEE
Q 000450 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH-------VAPVRQIILSPPQTEHPWSDCFLS 644 (1496)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H-------~~~V~~l~~sPd~~~~~~g~~l~S 644 (1496)
.=.-++|+|| +.+||.+...|+|+++|+.. ..+..+..- ...|..+.|.+......|...|+.
T Consensus 45 QWRkl~WSpD---------~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlv 114 (282)
T PF15492_consen 45 QWRKLAWSPD---------CTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLV 114 (282)
T ss_pred hheEEEECCC---------CcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEE
Confidence 3467899998 89999999999999999974 444443321 245777778766555566667888
Q ss_pred EeCCCcEEEEECC-----CCcEEEEec---CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCC-----CCEEEEEECCCCeE
Q 000450 645 VGEDFSVALASLE-----TLRVERMFP---GHPNYPAKVVWDCPRGYIACLCRDHSRTSDA-----VDVLFIWDVKTGAR 711 (1496)
Q Consensus 645 gs~DgsV~lWdl~-----~~~~l~~~~---gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~-----dg~V~VWDl~tg~~ 711 (1496)
..-+|.++=|-+. ..+.-++|. .+...|.++.++|..+.|++|+... ..|+ ..-+..|-+-.+..
T Consensus 115 i~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~--~~~~~s~a~~~GLtaWRiL~~~P 192 (282)
T PF15492_consen 115 INYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQ--NQDGMSKASSCGLTAWRILSDSP 192 (282)
T ss_pred EeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCC--CCCccccccccCceEEEEcCCCC
Confidence 8888877766542 234444443 3467899999999988887776531 1111 12467777666543
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=94.07 E-value=7.4 Score=48.05 Aligned_cols=224 Identities=14% Similarity=0.147 Sum_probs=116.0
Q ss_pred cEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCC-------------------CCCCccccC---------Ccce
Q 000450 511 IVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHN-------------------SPGASLKVN---------SHVS 562 (1496)
Q Consensus 511 ~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d-------------------~~~~~~d~~---------s~~~ 562 (1496)
.|+++.+..+.. -+++|..+|++.|++|..-.... .++.+-|+. ...+
T Consensus 3 ~v~~vs~a~~t~----Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P 78 (395)
T PF08596_consen 3 SVTHVSFAPETL----ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLP 78 (395)
T ss_dssp -EEEEEEETTTT----EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEE
T ss_pred eEEEEEecCCCc----eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCc
Confidence 466766555554 89999999999999996321110 011111211 1123
Q ss_pred EEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEE--cc------cCCCEEEEEECCCCC
Q 000450 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM--HH------HVAPVRQIILSPPQT 634 (1496)
Q Consensus 563 ~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~--~~------H~~~V~~l~~sPd~~ 634 (1496)
...+....++|++++.+. -.+++.|..||++.|-|++....+..- .. ....|+++.|..-.
T Consensus 79 ~~l~~~~~g~vtal~~S~----------iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~- 147 (395)
T PF08596_consen 79 LTLLDAKQGPVTALKNSD----------IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMT- 147 (395)
T ss_dssp EEEE---S-SEEEEEE-B----------TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-
T ss_pred hhheeccCCcEeEEecCC----------CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEe-
Confidence 444556689999999863 589999999999999999877766542 22 23457788775310
Q ss_pred CCCCC---CEEEEEeCCCcEEEEECC--C-CcE----EEEecCCCCCcEEEE-EcCC---------------------CC
Q 000450 635 EHPWS---DCFLSVGEDFSVALASLE--T-LRV----ERMFPGHPNYPAKVV-WDCP---------------------RG 682 (1496)
Q Consensus 635 ~~~~g---~~l~Sgs~DgsV~lWdl~--~-~~~----l~~~~gH~~~V~~V~-~spd---------------------g~ 682 (1496)
..-++ -++++|...|.+.+|.+. . ++- ......+.++|..|. ++.+ ..
T Consensus 148 ~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g 227 (395)
T PF08596_consen 148 LGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPG 227 (395)
T ss_dssp -TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----E
T ss_pred cCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCc
Confidence 01112 378888999999999774 1 221 112224556665554 3222 12
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeeecccccccccceEEcCCccccccceeeccCCcEEe
Q 000450 683 YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQ 762 (1496)
Q Consensus 683 ~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~~~~~~~~~sg~v~~g~~~~s~~l~~~~~D~~ir~ 762 (1496)
++++.+ + ..++|+...+++...... .....+...+ . +..-+......++.+..+|.++.
T Consensus 228 ~vVvvS-e--------~~irv~~~~~~k~~~K~~--~~~~~~~~~~----v------v~~~~~~~~~~Lv~l~~~G~i~i 286 (395)
T PF08596_consen 228 YVVVVS-E--------SDIRVFKPPKSKGAHKSF--DDPFLCSSAS----V------VPTISRNGGYCLVCLFNNGSIRI 286 (395)
T ss_dssp EEEEE--S--------SEEEEE-TT---EEEEE---SS-EEEEEEE----E------EEEE-EEEEEEEEEEETTSEEEE
T ss_pred EEEEEc-c--------cceEEEeCCCCcccceee--ccccccceEE----E------EeecccCCceEEEEEECCCcEEE
Confidence 444444 4 689999998877654433 2222222112 0 00000223445678888999999
Q ss_pred eccccccc
Q 000450 763 SQIQNDER 770 (1496)
Q Consensus 763 W~l~~~e~ 770 (1496)
..+..++.
T Consensus 287 ~SLP~Lke 294 (395)
T PF08596_consen 287 YSLPSLKE 294 (395)
T ss_dssp EETTT--E
T ss_pred EECCCchH
Confidence 88855544
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=94.02 E-value=4.9 Score=47.31 Aligned_cols=152 Identities=17% Similarity=0.184 Sum_probs=84.7
Q ss_pred CceEEEEEEcC-CCCEEEEEeCCCc-EEEEEccCCCCCcee------eeEEeeccccceeEeeeccccccccCccccccc
Q 000450 16 SHRVTATSALT-QPPTLYTGGSDGS-ILWWSFSDSSYSEIK------PVAMLCGHSAPIADLSICYPAMVSRDGKAEHWK 87 (1496)
Q Consensus 16 sh~Vtava~Sp-Dg~~LaTGs~DG~-I~lWdl~~~~~~~~~------~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~ 87 (1496)
+.+--.++++| ++..+|-+=.-|+ ..+||..+ ++.. +-..|.||
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~---g~~~~~~~a~~gRHFyGH------------------------- 55 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRT---GQLLQRLWAPPGRHFYGH------------------------- 55 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCC---CceeeEEcCCCCCEEecC-------------------------
Confidence 34555678888 4566666666676 66888874 2211 01122333
Q ss_pred ccccccccccccCCCCEEEEEe-----CCCeEEEEECCCC-eEEEeecCCCCCCC-CcEEEEcCCCCeEEEEcccccccC
Q 000450 88 AENSSNVMGKSSLDNGALISAC-----TDGVLCVWSRSSG-HCRRRRKLPPWVGS-PSVICTLPSNPRYVCIGCCFIDTN 160 (1496)
Q Consensus 88 ~~~~~~~~g~~s~d~~~LaSas-----~DG~l~VWdv~~G-~ci~~~~l~~~~g~-~~~i~~~s~~~~ll~~G~~~id~~ 160 (1496)
|.||+|+.+|.+.- ..|.|-|||+..+ +.+...... |. |-.+.. .+|++.|+++.-.|.+.
T Consensus 56 --------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~---GIGPHel~l-~pDG~tLvVANGGI~Th 123 (305)
T PF07433_consen 56 --------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSH---GIGPHELLL-MPDGETLVVANGGIETH 123 (305)
T ss_pred --------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCC---CcChhhEEE-cCCCCEEEEEcCCCccC
Confidence 23788888898853 4588999999844 333333333 33 444444 45664444443222222
Q ss_pred CcccccccccccccccccccCCCCCCCCccEEEEEECCceEEEEEEec-CccccCCeEEEEEe
Q 000450 161 QLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFH-GNLSIGPWKFMDVV 222 (1496)
Q Consensus 161 ~l~~~~~~~~v~~~~~~~d~~~~~~~~~~~~I~v~D~~t~~~l~~l~~-~~~s~~~i~~l~~s 222 (1496)
- -..++-.....+...+..+|..+++++....- ...+--.|+-+++.
T Consensus 124 p---------------d~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~ 171 (305)
T PF07433_consen 124 P---------------DSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVD 171 (305)
T ss_pred c---------------ccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEec
Confidence 1 00122234566788999999999998876321 01122236777765
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.27 Score=61.20 Aligned_cols=91 Identities=12% Similarity=0.051 Sum_probs=73.6
Q ss_pred cEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEE-EEEECCCCCCCCCCCEEEEEeCCCc
Q 000450 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVR-QIILSPPQTEHPWSDCFLSVGEDFS 650 (1496)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~-~l~~sPd~~~~~~g~~l~Sgs~Dgs 650 (1496)
.|.-+.|+|. ..++|.+..+|.|.+.-+. .+.+.++.-|...++ +++|.|| |+.++.|-.||+
T Consensus 22 ~i~~~ewnP~---------~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~D------GkllaVg~kdG~ 85 (665)
T KOG4640|consen 22 NIKRIEWNPK---------MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPD------GKLLAVGFKDGT 85 (665)
T ss_pred ceEEEEEcCc---------cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCC------CCEEEEEecCCe
Confidence 4667889996 7899999999999999887 778888887887887 9999999 999999999999
Q ss_pred EEEEECCCCcEEEEecC-CCCCcEEEEEc
Q 000450 651 VALASLETLRVERMFPG-HPNYPAKVVWD 678 (1496)
Q Consensus 651 V~lWdl~~~~~l~~~~g-H~~~V~~V~~s 678 (1496)
|++.|++++..+..+.. -...|.++.|.
T Consensus 86 I~L~Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 86 IRLHDVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred EEEEEccCCCceeccccccccchheeecc
Confidence 99999999887766421 12244455554
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.25 Score=60.32 Aligned_cols=85 Identities=20% Similarity=0.276 Sum_probs=65.3
Q ss_pred EEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCC--CCC-CE
Q 000450 624 VRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTS--DAV-DV 700 (1496)
Q Consensus 624 V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~--D~d-g~ 700 (1496)
-+-+.|||. |.+|+|--.-| |.+|--.+...++.|. |.+ |.-+.|||..+||+|-+....+.. |++ ..
T Consensus 213 etyv~wSP~------GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 213 ETYVRWSPK------GTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeEEecCC------ceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCce
Confidence 356889998 99999987665 8899877777777775 655 889999999999999775322211 111 47
Q ss_pred EEEEECCCCeEEEEEeC
Q 000450 701 LFIWDVKTGARERVLRG 717 (1496)
Q Consensus 701 V~VWDl~tg~~~~~l~g 717 (1496)
+.|||+.||.+.+.+.-
T Consensus 284 l~IWDI~tG~lkrsF~~ 300 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPV 300 (698)
T ss_pred EEEEEccccchhcceec
Confidence 99999999999888765
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=92.71 E-value=3.6 Score=41.23 Aligned_cols=107 Identities=11% Similarity=-0.002 Sum_probs=64.9
Q ss_pred EEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCC
Q 000450 512 VSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFN 591 (1496)
Q Consensus 512 Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~ 591 (1496)
|+++++.....--.+.|+.|++|..|+|++=+ ..+..+.. ++.|++|.... .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----------------e~~~Ei~e-~~~v~~L~~~~----------~ 53 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----------------EIVAEITE-TDKVTSLCSLG----------G 53 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----------------cEEEEEec-ccceEEEEEcC----------C
Confidence 45555444222122489999999999994322 33444443 45788887665 4
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCC-CEEEEEeCCCcEE
Q 000450 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS-DCFLSVGEDFSVA 652 (1496)
Q Consensus 592 ~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g-~~l~Sgs~DgsV~ 652 (1496)
..++-|-.+|||.+|+- ...+...+.... ++++.+.... .+| .-|++|-.+|.|-
T Consensus 54 ~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~-~~~~~~~D~~---gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 54 GRFAYALANGTVGVYDR--SQRLWRIKSKNQ-VTSMAFYDIN---GDGVPELIVGWSNGKVE 109 (111)
T ss_pred CEEEEEecCCEEEEEeC--cceeeeeccCCC-eEEEEEEcCC---CCCceEEEEEecCCeEE
Confidence 67999999999999985 333444444333 5555543321 012 2678888787663
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.37 Score=58.48 Aligned_cols=114 Identities=15% Similarity=0.215 Sum_probs=88.6
Q ss_pred CCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCC
Q 000450 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1496)
Q Consensus 569 H~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~D 648 (1496)
-.-++..+.++|. |.+|++...- -|.+|+-..+..+..|.. ..|.-+.|+|. +.+|.+=+..
T Consensus 31 ~~~p~~~~~~SP~---------G~~l~~~~~~-~V~~~~g~~~~~l~~~~~--~~V~~~~fSP~------~kYL~tw~~~ 92 (561)
T COG5354 31 ENWPVAYVSESPL---------GTYLFSEHAA-GVECWGGPSKAKLVRFRH--PDVKYLDFSPN------EKYLVTWSRE 92 (561)
T ss_pred cCcchhheeecCc---------chheehhhcc-ceEEccccchhheeeeec--CCceecccCcc------cceeeeeccC
Confidence 3457888899997 8888887655 489999888776666653 35899999998 7888875443
Q ss_pred ---------------CcEEEEECCCCcEEEEecCCCCC--cE-EEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 649 ---------------FSVALASLETLRVERMFPGHPNY--PA-KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 649 ---------------gsV~lWdl~~~~~l~~~~gH~~~--V~-~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
..+.+||+.++..+..|.+...+ .+ -+.|+-+++|++=... ..++|+++ |+.
T Consensus 93 pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~---------~sl~i~e~-t~n 162 (561)
T COG5354 93 PIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG---------SSLYIHEI-TDN 162 (561)
T ss_pred CccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc---------CeEEEEec-CCc
Confidence 34899999999999999887766 55 7899999998865433 47999997 544
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.23 Score=55.12 Aligned_cols=103 Identities=14% Similarity=0.166 Sum_probs=58.8
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.+++|..+|.|.++.|.. .+. ..+. ...+ ...|-|.-..-+ ++.+..+++.|+.|+.|
T Consensus 72 ~~~vG~~dg~v~~~n~n~-~g~-----~~d~-------~~s~-~e~i~~~Ip~~~--------~~~~~c~~~~dg~ir~~ 129 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNL-EGA-----HSDR-------VCSG-EESIDLGIPNGR--------DSSLGCVGAQDGRIRAC 129 (238)
T ss_pred eEEeecccceEEEecCCc-cch-----HHHh-------hhcc-cccceecccccc--------ccceeEEeccCCceeee
Confidence 799999999999988872 110 0010 0011 122222221111 25688899999999999
Q ss_pred ECCCCceEEEEcccC-CCEEEEEECCCCCCCCCCCEEEEE--eCCCcEEEEECC
Q 000450 607 DLGSGNLITVMHHHV-APVRQIILSPPQTEHPWSDCFLSV--GEDFSVALASLE 657 (1496)
Q Consensus 607 Dl~tg~~l~~~~~H~-~~V~~l~~sPd~~~~~~g~~l~Sg--s~DgsV~lWdl~ 657 (1496)
++..++.+...-.|. .++.....+.. +..++.. |.|..++.|++.
T Consensus 130 n~~p~k~~g~~g~h~~~~~e~~ivv~s------d~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 130 NIKPNKVLGYVGQHNFESGEELIVVGS------DEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccCceeeeeccccCCCcceeEEecC------CceEEeeccccchhhhhcchh
Confidence 999888777776676 33333333322 3344444 444555555543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=92.24 E-value=12 Score=42.70 Aligned_cols=109 Identities=10% Similarity=0.107 Sum_probs=71.3
Q ss_pred EEEEEEe-cCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcc-----cCCCEEEEEECCCCCCCCCCCEEEEEe
Q 000450 573 VLCLAAH-RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH-----HVAPVRQIILSPPQTEHPWSDCFLSVG 646 (1496)
Q Consensus 573 V~~La~s-pd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~-----H~~~V~~l~~sPd~~~~~~g~~l~Sgs 646 (1496)
...+++. ++ +.++++ ..+ .+.++|..+++....+.. .....+.+++.|+ |++.++-.
T Consensus 42 ~~G~~~~~~~---------g~l~v~-~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~------G~ly~t~~ 104 (246)
T PF08450_consen 42 PNGMAFDRPD---------GRLYVA-DSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD------GNLYVTDS 104 (246)
T ss_dssp EEEEEEECTT---------SEEEEE-ETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT------S-EEEEEE
T ss_pred CceEEEEccC---------CEEEEE-EcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC------CCEEEEec
Confidence 6667777 43 455444 444 456669998865443332 3346789999998 88777766
Q ss_pred CC--------CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 647 ED--------FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 647 ~D--------gsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
.. +.|..++.. ++...... .-...+.++|+||++.|++.... .+.|+.+++.
T Consensus 105 ~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~-------~~~i~~~~~~ 164 (246)
T PF08450_consen 105 GGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSF-------NGRIWRFDLD 164 (246)
T ss_dssp CCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETT-------TTEEEEEEEE
T ss_pred CCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccc-------cceeEEEecc
Confidence 54 457777766 55544433 34567899999999988765543 2789999885
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.26 Score=62.52 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=74.6
Q ss_pred CCEEEEEe----CCCcEEEEECCCCceEEE--EcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 000450 591 NEVLVSGS----MDCSIRIWDLGSGNLITV--MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 664 (1496)
Q Consensus 591 ~~~L~SGs----~DgtV~lWDl~tg~~l~~--~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~ 664 (1496)
..+++.++ .-|+|-|+- ++|++-+. ...| ++++.|+|. .-.+++|-.-|.+.+|...+.+.-..
T Consensus 27 ePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe------~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 27 EPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPE------EFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred CceeEEEEecCCCCceEEEEe-cCCCCCccccccee---hhhhccChH------HHHHhhccccceeEEEecCCceeeee
Confidence 45555444 345677774 56765432 2222 457899998 56788888889999999887776666
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 665 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 665 ~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
...|+.+|.-+.|||+|..|+++..- |.|.+|-..
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~--------g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNP--------GSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCC--------ceeEEEEee
Confidence 67899999999999999999998877 999999765
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.61 Score=58.83 Aligned_cols=104 Identities=11% Similarity=0.030 Sum_probs=79.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCceE-EEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcE---EEEe-
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV---ERMF- 665 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l-~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~---l~~~- 665 (1496)
+.+++-|+.-|.+.+++-..++.+ ....+-.+.+..+.++++ ..++|.|+..+.|.++.+..+.+ ...-
T Consensus 45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~------e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV------EYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch------hHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 689999999999999998776644 333334455566667887 67888899999999998876432 1111
Q ss_pred --cCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 666 --PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 666 --~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
..|...|++++|++++..+.+|..- |+|..-.+.+
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~--------Gkv~~~~L~s 155 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMKLYSGDSQ--------GKVVLTELDS 155 (726)
T ss_pred ccccCCceEEEEEecccccEEeecCCC--------ceEEEEEech
Confidence 2367899999999999999998777 9998877766
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=91.78 E-value=2.3 Score=56.16 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=89.9
Q ss_pred cccCCcceEEEEecCCcc-EEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCC-ceEEEEcc----cCCCEEEEE
Q 000450 555 LKVNSHVSRQYFLGHTGA-VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHH----HVAPVRQII 628 (1496)
Q Consensus 555 ~d~~s~~~~~~l~gH~~~-V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg-~~l~~~~~----H~~~V~~l~ 628 (1496)
.|.+.|+.+..+.-|... |..++-.... ++ - .....+.|-.+..+..||.+-. ..+..-.. ......|++
T Consensus 509 mDLe~GKVV~eW~~~~~~~v~~~~p~~K~-aq--l-t~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~a 584 (794)
T PF08553_consen 509 MDLERGKVVEEWKVHDDIPVVDIAPDSKF-AQ--L-TNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFA 584 (794)
T ss_pred EecCCCcEEEEeecCCCcceeEecccccc-cc--c-CCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEE
Confidence 367788888888877643 6655432110 00 0 1234566777889999999853 22211111 233566777
Q ss_pred ECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 629 LSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 629 ~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
-..+ .+||.|+.+|.|||||-...+....+++-..+|..|..+.||+||++.|.. .+-+++.
T Consensus 585 Tt~~-------G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t---------yLlLi~t 646 (794)
T PF08553_consen 585 TTED-------GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT---------YLLLIDT 646 (794)
T ss_pred ecCC-------ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc---------eEEEEEE
Confidence 6654 489999999999999954444556678888999999999999999998875 6777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.43 Score=52.99 Aligned_cols=92 Identities=9% Similarity=0.036 Sum_probs=55.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCceE-EEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP 669 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l-~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~ 669 (1496)
+..++.|+.|+.|.+|...-.... ..+..-..+|-+. + |.. +.+.+.++++.|+.|+.|++.-++.+.....|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~-I-p~~---~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG-I-PNG---RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceec-c-ccc---cccceeEEeccCCceeeeccccCceeeeecccc
Confidence 567889999999999987621111 1111111222222 2 221 125699999999999999999988887777776
Q ss_pred C-CcEEEEEcCCCCEEEEE
Q 000450 670 N-YPAKVVWDCPRGYIACL 687 (1496)
Q Consensus 670 ~-~V~~V~~spdg~~L~tg 687 (1496)
. ++.....+..++++...
T Consensus 145 ~~~~e~~ivv~sd~~i~~a 163 (238)
T KOG2444|consen 145 FESGEELIVVGSDEFLKIA 163 (238)
T ss_pred CCCcceeEEecCCceEEee
Confidence 3 33333333333444433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.3 Score=61.89 Aligned_cols=70 Identities=20% Similarity=0.164 Sum_probs=62.0
Q ss_pred EEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEE
Q 000450 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 652 (1496)
Q Consensus 573 V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~ 652 (1496)
+++|+|||. .-.|++|=.-|.+.+|...+.+.-..-..|..+|.-+.|+|+ |.+++++..-|.|.
T Consensus 62 atSLCWHpe---------~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~------G~~l~t~d~~g~v~ 126 (1416)
T KOG3617|consen 62 ATSLCWHPE---------EFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHD------GTVLMTLDNPGSVH 126 (1416)
T ss_pred hhhhccChH---------HHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCC------CCeEEEcCCCceeE
Confidence 678999996 568889988899999998877766666779999999999999 99999999999999
Q ss_pred EEECC
Q 000450 653 LASLE 657 (1496)
Q Consensus 653 lWdl~ 657 (1496)
+|.+.
T Consensus 127 lwr~d 131 (1416)
T KOG3617|consen 127 LWRYD 131 (1416)
T ss_pred EEEee
Confidence 99876
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.57 Score=39.51 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=34.6
Q ss_pred ecCCCCCCceEEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 000450 9 IWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFS 46 (1496)
Q Consensus 9 lw~~~~psh~Vtava~SpDg~~LaTGs~DG~I~lWdl~ 46 (1496)
+++.+..+.+|+++.++|....||.|..||+|.++.++
T Consensus 4 ~~~~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 4 QLGEKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred eecccCCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 45677777889999999999999999999999999996
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=90.76 E-value=8.8 Score=47.38 Aligned_cols=182 Identities=12% Similarity=0.094 Sum_probs=96.2
Q ss_pred CCccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEE--Eec------CCccEEEEEEe
Q 000450 508 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY--FLG------HTGAVLCLAAH 579 (1496)
Q Consensus 508 h~~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~--l~g------H~~~V~~La~s 579 (1496)
..+.|+++... +.. .++.|+++|.+.|.+.. .+..+.. +.. ....|+++.|.
T Consensus 85 ~~g~vtal~~S-~iG----Fvaigy~~G~l~viD~R---------------GPavI~~~~i~~~~~~~~~~~~vt~ieF~ 144 (395)
T PF08596_consen 85 KQGPVTALKNS-DIG----FVAIGYESGSLVVIDLR---------------GPAVIYNENIRESFLSKSSSSYVTSIEFS 144 (395)
T ss_dssp -S-SEEEEEE--BTS----EEEEEETTSEEEEEETT---------------TTEEEEEEEGGG--T-SS----EEEEEEE
T ss_pred cCCcEeEEecC-CCc----EEEEEecCCcEEEEECC---------------CCeEEeeccccccccccccccCeeEEEEE
Confidence 35789998864 444 69999999999995432 1111111 111 23468888886
Q ss_pred cCCCCcccCcCCCEEEEEeCCCcEEEEECCC---Cc----eEEEEcccCCCEEEEE-ECCCCCC--------------CC
Q 000450 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS---GN----LITVMHHHVAPVRQII-LSPPQTE--------------HP 637 (1496)
Q Consensus 580 pd~~~~~~~~~~~~L~SGs~DgtV~lWDl~t---g~----~l~~~~~H~~~V~~l~-~sPd~~~--------------~~ 637 (1496)
-.. -.+..|..-.|+.|...|.+.+|.+.- +. .......+.++|..+. ++.+... ..
T Consensus 145 vm~-~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~ 223 (395)
T PF08596_consen 145 VMT-LGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGI 223 (395)
T ss_dssp EEE--TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT-
T ss_pred EEe-cCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCC
Confidence 431 111234456899999999999998752 21 1122235667777766 4333111 01
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEE-----cCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEE
Q 000450 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW-----DCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1496)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~-----spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~ 712 (1496)
.-+.++....+..+|++.+-+.+..+...........+.+ ...+..|++-..+ |.|+++.+..-+.+
T Consensus 224 ~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~--------G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 224 SIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNN--------GSIRIYSLPSLKEI 295 (395)
T ss_dssp ---EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETT--------SEEEEEETTT--EE
T ss_pred CcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECC--------CcEEEEECCCchHh
Confidence 1123455566888999999888776554422222334445 2356678888887 99999999887776
Q ss_pred EEEeCC
Q 000450 713 RVLRGT 718 (1496)
Q Consensus 713 ~~l~gh 718 (1496)
..+.-+
T Consensus 296 ~~~~l~ 301 (395)
T PF08596_consen 296 KSVSLP 301 (395)
T ss_dssp EEEE-S
T ss_pred hcccCC
Confidence 665543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.72 E-value=25 Score=40.14 Aligned_cols=70 Identities=9% Similarity=-0.073 Sum_probs=55.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP 666 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~ 666 (1496)
+++++-|...+.+.+-+.++|..+..|..-..-=.+-...++ +..+.+++.|++....|.++..++...+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~------~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFD------GGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCC------CceEEEecCCCcEEEecccccceEEecc
Confidence 677999999999999999999888777543321122334556 8899999999999999999999987754
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.70 E-value=12 Score=50.40 Aligned_cols=158 Identities=12% Similarity=0.086 Sum_probs=94.4
Q ss_pred ccEEEEEeeccccccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEec-CCccEEEEEEecCCCCcccC
Q 000450 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLG-HTGAVLCLAAHRMVGTAKGW 588 (1496)
Q Consensus 510 ~~Vts~~~~s~~~f~P~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~g-H~~~V~~La~spd~~~~~~~ 588 (1496)
+.|.++.+..+.. .++.+..+|+|.+.+-. +. ...+.| -.+.|.+.+|+||
T Consensus 69 ~~i~s~~fl~d~~----~i~v~~~~G~iilvd~e---------------t~--~~eivg~vd~GI~aaswS~D------- 120 (1265)
T KOG1920|consen 69 DEIVSVQFLADTN----SICVITALGDIILVDPE---------------TL--ELEIVGNVDNGISAASWSPD------- 120 (1265)
T ss_pred cceEEEEEecccc----eEEEEecCCcEEEEccc---------------cc--ceeeeeeccCceEEEeecCC-------
Confidence 4677777555554 78999999999985322 11 111112 2457999999998
Q ss_pred cCCCEEEEEeCCCcEEEEEC----CC-------------------CceEEEEcccCC---------------------CE
Q 000450 589 SFNEVLVSGSMDCSIRIWDL----GS-------------------GNLITVMHHHVA---------------------PV 624 (1496)
Q Consensus 589 ~~~~~L~SGs~DgtV~lWDl----~t-------------------g~~l~~~~~H~~---------------------~V 624 (1496)
+++++-.+.+.++.+-+- -. |+.-..|++..+ .=
T Consensus 121 --ee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~ 198 (1265)
T KOG1920|consen 121 --EELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHK 198 (1265)
T ss_pred --CcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCC
Confidence 788888887777766443 11 111112332111 11
Q ss_pred EEEEECCCCCCCCCCCEEEEE----eCC-CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCC
Q 000450 625 RQIILSPPQTEHPWSDCFLSV----GED-FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVD 699 (1496)
Q Consensus 625 ~~l~~sPd~~~~~~g~~l~Sg----s~D-gsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg 699 (1496)
++|.|.-| |++|+.. -.+ +.|++||-+ |..-.+-....+-=.+++|.|.|..+++--.+ .+| +
T Consensus 199 ~~IsWRgD------g~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~---~sd--~ 266 (1265)
T KOG1920|consen 199 TSISWRGD------GEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCK---TSD--S 266 (1265)
T ss_pred ceEEEccC------CcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeec---CCC--C
Confidence 24667666 8888872 234 899999966 33211111112223579999999999876654 233 5
Q ss_pred EEEEEECCCCe
Q 000450 700 VLFIWDVKTGA 710 (1496)
Q Consensus 700 ~V~VWDl~tg~ 710 (1496)
.|.++.- +|-
T Consensus 267 ~IvffEr-NGL 276 (1265)
T KOG1920|consen 267 DIVFFER-NGL 276 (1265)
T ss_pred cEEEEec-CCc
Confidence 7888874 443
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.079 Score=65.52 Aligned_cols=142 Identities=18% Similarity=0.222 Sum_probs=93.1
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEe----CCCc
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS----MDCS 602 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs----~Dgt 602 (1496)
.++.|..+|.|.+.....-+ . ....+..+|....++++|++- +..+||.|- .|..
T Consensus 72 IlavG~atG~I~l~s~r~~h-----------d--Ss~E~tp~~ar~Ct~lAwneL--------Dtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPH-----------D--SSAEVTPGYARPCTSLAWNEL--------DTNHLAAGLDKHRNDSS 130 (783)
T ss_pred hhhhccccCceEEeecCCcc-----------c--ccceecccccccccccccccc--------cHHHHHhhhhhhcccCC
Confidence 67899999999985543100 0 123345678888999999885 356777773 6778
Q ss_pred EEEEECCCC--ceE--EEEcc-cCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCc-EEEEecCCCCCcEEEE
Q 000450 603 IRIWDLGSG--NLI--TVMHH-HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR-VERMFPGHPNYPAKVV 676 (1496)
Q Consensus 603 V~lWDl~tg--~~l--~~~~~-H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~-~l~~~~gH~~~V~~V~ 676 (1496)
+.|||+.++ .+. ..|.+ -.....++.|-.+ .+++.+|...+.++++|++..- ....+ ....+..+.
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd------~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~t 202 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRD------TKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGIT 202 (783)
T ss_pred ccceecccccCCCccccccccccccCccccccccC------cchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccce
Confidence 999999876 221 22222 2334456666655 6789999999999999998321 11111 233455677
Q ss_pred EcC-CCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 677 WDC-PRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 677 ~sp-dg~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
.+| .+.|++.-. | |.|.+||.
T Consensus 203 Vdp~~~nY~cs~~-d--------g~iAiwD~ 224 (783)
T KOG1008|consen 203 VDPFSPNYFCSNS-D--------GDIAIWDT 224 (783)
T ss_pred ecCCCCCceeccc-c--------Cceeeccc
Confidence 777 667876443 5 89999993
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=90.25 E-value=6.2 Score=48.65 Aligned_cols=112 Identities=11% Similarity=0.040 Sum_probs=69.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEE-EEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVR-QIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP 669 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~-~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~ 669 (1496)
+..++.+..|+.+..+|.++|+.+..+......+. ...-+|- ..+..++.++.|+.+..+|.++|+.+-.++...
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~----v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~ 235 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA----TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQ 235 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE----EECCEEEEEcCCCEEEEEEccCChhhheecccc
Confidence 34566677889999999999998877754321110 0001121 013356667788999999999988765543110
Q ss_pred C-------CcEEEEEcC--CCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEE
Q 000450 670 N-------YPAKVVWDC--PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1496)
Q Consensus 670 ~-------~V~~V~~sp--dg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~ 714 (1496)
. ....+.-+| .+..+++++.+ |.++..|..+|+.+-.
T Consensus 236 ~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~--------g~l~ald~~tG~~~W~ 281 (394)
T PRK11138 236 PTGATEIDRLVDVDTTPVVVGGVVYALAYN--------GNLVALDLRSGQIVWK 281 (394)
T ss_pred CCCccchhcccccCCCcEEECCEEEEEEcC--------CeEEEEECCCCCEEEe
Confidence 0 011111222 35677777777 8999999999987654
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.87 E-value=0.6 Score=61.33 Aligned_cols=82 Identities=10% Similarity=0.002 Sum_probs=63.3
Q ss_pred CCEEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 639 SDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~~~-~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
+..++.|++-|.|...|+... ++...-..-..+|++++|+-+|++++.|-.+ |-|.+||+.+++.++.+.-
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~--------G~V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGD--------GHVTVWDMHRAKILKVITE 170 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCC--------CcEEEEEccCCcceeeeee
Confidence 345777777788888887653 2222222235689999999999999988877 9999999999999999999
Q ss_pred CCCCceeeeee
Q 000450 718 TASHSMFDHFC 728 (1496)
Q Consensus 718 h~a~vi~~~~~ 728 (1496)
|.+++..+.+.
T Consensus 171 ~~ap~t~vi~v 181 (1206)
T KOG2079|consen 171 HGAPVTGVIFV 181 (1206)
T ss_pred cCCccceEEEE
Confidence 99888776554
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=89.86 E-value=11 Score=42.93 Aligned_cols=109 Identities=18% Similarity=0.058 Sum_probs=79.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~ 670 (1496)
..+++-||..+.+.--|..+|+.+..-.. ...|.+-+.- - |+.++-|+..+.+.+.+.++|.....|..-..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-v------gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-V------GDFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-E------CCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 67888899999999999999987643221 1223222211 1 67899999999999999999987777653322
Q ss_pred CcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 671 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 671 ~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
-=......+++..+.+|+.| ++.|.-|.++..++...
T Consensus 95 vk~~a~~d~~~glIycgshd--------~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHD--------GNFYALDPKTYGCVYKS 131 (354)
T ss_pred hccceEEcCCCceEEEecCC--------CcEEEecccccceEEec
Confidence 11234457889999999999 99999999998887653
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.48 E-value=1.5 Score=57.81 Aligned_cols=94 Identities=11% Similarity=0.080 Sum_probs=69.4
Q ss_pred CCEEEEEeCCCcEEEEECCCC-ceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP 669 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg-~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~ 669 (1496)
+.+++-|+..|.|-..|.... ...+.=..-.++|++++|+-+ |..++.|-.+|.|.+||...++.++.+.-|.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~d------g~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQD------GSLLLAGLGDGHVTVWDMHRAKILKVITEHG 172 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCC------CceeccccCCCcEEEEEccCCcceeeeeecC
Confidence 456777877788888776532 111222223679999999998 8999999999999999999999999887776
Q ss_pred CCcEE---EEEcCCCCEEEEEEcC
Q 000450 670 NYPAK---VVWDCPRGYIACLCRD 690 (1496)
Q Consensus 670 ~~V~~---V~~spdg~~L~tgs~D 690 (1496)
.+.+. +.|..++..++++...
T Consensus 173 ap~t~vi~v~~t~~nS~llt~D~~ 196 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTSDTG 196 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEccCC
Confidence 65544 4556677777776554
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=87.93 E-value=12 Score=46.10 Aligned_cols=109 Identities=7% Similarity=-0.118 Sum_probs=70.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCC
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1496)
Q Consensus 591 ~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~ 670 (1496)
+..++.++.++.+..+|.++|+.+.+............+. +..++.+..|+.+.-+|.++|+.+-.+.....
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~--------~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS--------DGLVLVHTSNGMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE--------CCEEEEECCCCEEEEEEccCCCEeeeecCCCC
Confidence 4566677889999999999999887765443211111111 34666778899999999999998877653211
Q ss_pred CcE-EEEEcC--CCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 671 YPA-KVVWDC--PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 671 ~V~-~V~~sp--dg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
.+. ...-+| .+..++.+..+ |.++..|.++|+.+...
T Consensus 192 ~~~~~~~~sP~v~~~~v~~~~~~--------g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 192 SLTLRGESAPATAFGGAIVGGDN--------GRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred cccccCCCCCEEECCEEEEEcCC--------CEEEEEEccCChhhhee
Confidence 000 000011 13456666666 89999999999876544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.55 E-value=9.4 Score=47.82 Aligned_cols=103 Identities=14% Similarity=0.149 Sum_probs=56.4
Q ss_pred EEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEE
Q 000450 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 652 (1496)
Q Consensus 573 V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~ 652 (1496)
-....|.+. ..+|.-....+|.++.-.+.+....+... ..+..+-. |.+|+..+.+ .|.
T Consensus 71 g~~~vw~~~----------n~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---------G~LL~~~~~~-~i~ 129 (443)
T PF04053_consen 71 GLSFVWSSR----------NRYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---------GNLLGVKSSD-FIC 129 (443)
T ss_dssp -SEEEE-TS----------SEEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----------SSSEEEEETT-EEE
T ss_pred eeEEEEecC----------ccEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---------CcEEEEECCC-CEE
Confidence 346677763 34666666888999632222222233222 12444432 4555555544 899
Q ss_pred EEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 653 LASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 653 lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
+||+.+++.++.+... +|..|.|++++.+++..+.+ +++|++..
T Consensus 130 ~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~---------~i~il~~~ 173 (443)
T PF04053_consen 130 FYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD---------SIYILKYN 173 (443)
T ss_dssp EE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S----------SEEEEEE-
T ss_pred EEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC---------eEEEEEec
Confidence 9999999999998743 38999999999999988875 78888754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=86.45 E-value=7.6 Score=51.50 Aligned_cols=101 Identities=14% Similarity=0.114 Sum_probs=64.7
Q ss_pred CEEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEE---EecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCc
Q 000450 526 YAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY---FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS 602 (1496)
Q Consensus 526 ~~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~---l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~Dgt 602 (1496)
....+|-.+..+.. ||.... ..+.+.. .........|++-.. ..++|.||.+|.
T Consensus 543 e~tflGls~n~lfr--iDpR~~-----------~~k~v~~~~k~Y~~~~~Fs~~aTt~----------~G~iavgs~~G~ 599 (794)
T PF08553_consen 543 EQTFLGLSDNSLFR--IDPRLS-----------GNKLVDSQSKQYSSKNNFSCFATTE----------DGYIAVGSNKGD 599 (794)
T ss_pred CceEEEECCCceEE--eccCCC-----------CCceeeccccccccCCCceEEEecC----------CceEEEEeCCCc
Confidence 35677777777666 653221 1111110 112234566776544 578999999999
Q ss_pred EEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcEEEEEC
Q 000450 603 IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1496)
Q Consensus 603 V~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWdl 656 (1496)
||+||-...+....|.+-..||..|.++.| |++++..| +..+.|++.
T Consensus 600 IRLyd~~g~~AKT~lp~lG~pI~~iDvt~D------GkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 600 IRLYDRLGKRAKTALPGLGDPIIGIDVTAD------GKWILATC-KTYLLLIDT 646 (794)
T ss_pred EEeecccchhhhhcCCCCCCCeeEEEecCC------CcEEEEee-cceEEEEEE
Confidence 999994332333455666889999999999 88877666 456667765
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.17 E-value=0.36 Score=60.00 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=75.6
Q ss_pred cEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEeCCCcE
Q 000450 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 651 (1496)
Q Consensus 572 ~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs~DgsV 651 (1496)
.+.+++|-.+ .+++++|.....+.++|++.. +.......+..|..+.+.|-. ++++|+-. |+.|
T Consensus 156 gqns~cwlrd---------~klvlaGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~-----~nY~cs~~-dg~i 219 (783)
T KOG1008|consen 156 GQNSVCWLRD---------TKLVLAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFS-----PNYFCSNS-DGDI 219 (783)
T ss_pred CccccccccC---------cchhhcccccchhhhhhhhhh-hhhhhhhhhhhcccceecCCC-----CCceeccc-cCce
Confidence 3446777654 688999998889999998732 223333445567777787732 67888776 9999
Q ss_pred EEEE-CCCCc-EEEEecCCC----CCcEEEEEcCCCC-EEEEEEcCCCCCCCCCCEEEEEECC
Q 000450 652 ALAS-LETLR-VERMFPGHP----NYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 652 ~lWd-l~~~~-~l~~~~gH~----~~V~~V~~spdg~-~L~tgs~D~sg~~D~dg~V~VWDl~ 707 (1496)
.+|| .++-+ +++.+.... ..+..++|.|... .+++...| -++|+.+|+.
T Consensus 220 AiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd-------S~tIrlydi~ 275 (783)
T KOG1008|consen 220 AIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD-------SITIRLYDIC 275 (783)
T ss_pred eeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC-------cceEEEeccc
Confidence 9999 44332 222222222 2488999999654 56666666 2789999984
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.01 E-value=6.4 Score=48.63 Aligned_cols=133 Identities=13% Similarity=0.080 Sum_probs=86.8
Q ss_pred cccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEEECCCCc--eEEEEcccC----CCEEEEE
Q 000450 555 LKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN--LITVMHHHV----APVRQII 628 (1496)
Q Consensus 555 ~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lWDl~tg~--~l~~~~~H~----~~V~~l~ 628 (1496)
.|++.|+.+...+-|.. |+-+.+.|+.-.+ .-...+. +.|-.|..|+=||.+-.. .+..-..|. .-..|.+
T Consensus 361 lDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~-Ql~~e~T-lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~a 437 (644)
T KOG2395|consen 361 LDIERGKIVEEWKFEDD-INMVDITPDFKFA-QLTSEQT-LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFA 437 (644)
T ss_pred eecccceeeeEeeccCC-cceeeccCCcchh-ccccccc-EEeecCCceEEecccccCcceeeeeeccccccccccceee
Confidence 35777888887777666 7777777762000 0001122 345568889999987322 222222221 1234444
Q ss_pred ECCCCCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 629 LSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 629 ~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
-.- ..+++.||.+|.|||||--..+....++|-..+|..|..+.||++|++.|.. .+-+-++
T Consensus 438 TT~-------sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t---------yLlLi~t 499 (644)
T KOG2395|consen 438 TTE-------SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT---------YLLLIDT 499 (644)
T ss_pred ecC-------CceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc---------EEEEEEE
Confidence 433 3489999999999999974444456678999999999999999999988864 5666554
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.43 E-value=38 Score=42.36 Aligned_cols=122 Identities=19% Similarity=0.133 Sum_probs=71.7
Q ss_pred EEEEecCCCCcccCcCCCEEEEEeCCCc--EEEEECCCCceEEEEcccCCCEEEEEECCCCCCCCCCCEEEEEe-CCCc-
Q 000450 575 CLAAHRMVGTAKGWSFNEVLVSGSMDCS--IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG-EDFS- 650 (1496)
Q Consensus 575 ~La~spd~~~~~~~~~~~~L~SGs~Dgt--V~lWDl~tg~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~Sgs-~Dgs- 650 (1496)
..+|+|| + ..++++...|+. |.+.|+..++ +..+..-.+.-..=.|+|| |+.++-.+ ..|.
T Consensus 242 ~P~fspD-----G---~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spd------G~~ivf~Sdr~G~p 306 (425)
T COG0823 242 APAFSPD-----G---SKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPD------GSKIVFTSDRGGRP 306 (425)
T ss_pred CccCCCC-----C---CEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCC------CCEEEEEeCCCCCc
Confidence 5578887 2 556777777775 5566776665 3334433333335557787 77666554 3443
Q ss_pred -EEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEEeC
Q 000450 651 -VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 651 -V~lWdl~~~~~l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l~g 717 (1496)
|.+.|++..... .+.-....-..-.|+|||++++..+.. +++-.|.+.|+.++..++.++.
T Consensus 307 ~I~~~~~~g~~~~-riT~~~~~~~~p~~SpdG~~i~~~~~~-----~g~~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 307 QIYLYDLEGSQVT-RLTFSGGGNSNPVWSPDGDKIVFESSS-----GGQWDIDKNDLASGGKIRILTS 368 (425)
T ss_pred ceEEECCCCCcee-EeeccCCCCcCccCCCCCCEEEEEecc-----CCceeeEEeccCCCCcEEEccc
Confidence 555566655542 222222222267899999999877643 1112377777777765666554
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=83.76 E-value=58 Score=37.67 Aligned_cols=145 Identities=14% Similarity=0.172 Sum_probs=87.6
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCcceEEEEecCCccEEEEEEecCCCCcccCcCCCEEEEEeCCCcEEEE
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~V~~~~~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~La~spd~~~~~~~~~~~~L~SGs~DgtV~lW 606 (1496)
.++.|+++| +.++..+ ......+.. +...|..+...++ -+.|+.=+ |+.+.++
T Consensus 9 ~L~vGt~~G-l~~~~~~--------------~~~~~~~i~--~~~~I~ql~vl~~---------~~~llvLs-d~~l~~~ 61 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLS--------------DPSKPTRIL--KLSSITQLSVLPE---------LNLLLVLS-DGQLYVY 61 (275)
T ss_pred EEEEEECCC-EEEEEec--------------CCccceeEe--ecceEEEEEEecc---------cCEEEEEc-CCccEEE
Confidence 799999998 6664431 011122222 2233999999886 34444433 5999999
Q ss_pred ECCCCceEEE--------------EcccCCCEEEEE-ECCCCCCCCCCCEEEEEeCCCcEEEEECCCC-----cEEEEec
Q 000450 607 DLGSGNLITV--------------MHHHVAPVRQII-LSPPQTEHPWSDCFLSVGEDFSVALASLETL-----RVERMFP 666 (1496)
Q Consensus 607 Dl~tg~~l~~--------------~~~H~~~V~~l~-~sPd~~~~~~g~~l~Sgs~DgsV~lWdl~~~-----~~l~~~~ 666 (1496)
++........ -......+...+ -... .+...+.+...+.|.+|..... +..+.+.
T Consensus 62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~-----~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~ 136 (275)
T PF00780_consen 62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGH-----EGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS 136 (275)
T ss_pred EchhhccccccccccccccccccccccccCCeeEEeecccc-----ccceEEEEEECCEEEEEEEECCcccccceeEEEE
Confidence 9976543321 111233444444 1111 1445555666679999887652 4455554
Q ss_pred CCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeEEEEE
Q 000450 667 GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1496)
Q Consensus 667 gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~~~~l 715 (1496)
-...+..+.|. ++.+++|..+ ...+.|+.++.....+
T Consensus 137 -lp~~~~~i~~~--~~~i~v~~~~---------~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 137 -LPDPPSSIAFL--GNKICVGTSK---------GFYLIDLNTGSPSELL 173 (275)
T ss_pred -cCCCcEEEEEe--CCEEEEEeCC---------ceEEEecCCCCceEEe
Confidence 34678999998 5678887764 6889999988765544
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.45 E-value=60 Score=36.75 Aligned_cols=92 Identities=10% Similarity=-0.010 Sum_probs=57.1
Q ss_pred EEEEEECCCCCCCCCCCEEEEEeCCCcEEEEE--CCCC-----cEEEEecC----CCCCcEEEEEcCCCCEEEEEEcCCC
Q 000450 624 VRQIILSPPQTEHPWSDCFLSVGEDFSVALAS--LETL-----RVERMFPG----HPNYPAKVVWDCPRGYIACLCRDHS 692 (1496)
Q Consensus 624 V~~l~~sPd~~~~~~g~~l~Sgs~DgsV~lWd--l~~~-----~~l~~~~g----H~~~V~~V~~spdg~~L~tgs~D~s 692 (1496)
-+.++|+.+. ......-+.+.+|.-|| ..+| +.+..++. ..-..-.++...+|...++.-..
T Consensus 160 sNgl~Wd~d~-----K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng-- 232 (310)
T KOG4499|consen 160 SNGLAWDSDA-----KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG-- 232 (310)
T ss_pred CccccccccC-----cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC--
Confidence 3466776652 23445556788898888 4444 33333322 11123345556666655544443
Q ss_pred CCCCCCCEEEEEECCCCeEEEEEeCCCCCceeeeee
Q 000450 693 RTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1496)
Q Consensus 693 g~~D~dg~V~VWDl~tg~~~~~l~gh~a~vi~~~~~ 728 (1496)
++|+..|..||+.+.++.=.+.++.++.|.
T Consensus 233 ------~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 233 ------GTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ------cEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 899999999999999988877777765443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=82.34 E-value=13 Score=47.95 Aligned_cols=93 Identities=14% Similarity=0.134 Sum_probs=67.4
Q ss_pred CCcEEEEECCC----C-ceEEEEcccCCCEEEEEECCCCCCCCCCCEEE-EEeCCCcEEEEECCCCcE------------
Q 000450 600 DCSIRIWDLGS----G-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFL-SVGEDFSVALASLETLRV------------ 661 (1496)
Q Consensus 600 DgtV~lWDl~t----g-~~l~~~~~H~~~V~~l~~sPd~~~~~~g~~l~-Sgs~DgsV~lWdl~~~~~------------ 661 (1496)
+++|.+.|..+ + +.+..+.. ......+.++|| |++++ ++..+.+|.+.|+.+.+.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPD------GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~v 367 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPD------GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAV 367 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCC------CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceE
Confidence 67899999988 3 44444433 445688999999 67554 556699999999987652
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCC
Q 000450 662 ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 662 l~~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~t 708 (1496)
+....- .-.+...+|.++|....+...| ..|-.||+.+
T Consensus 368 vaevev-GlGPLHTaFDg~G~aytslf~d--------sqv~kwn~~~ 405 (635)
T PRK02888 368 VAEPEL-GLGPLHTAFDGRGNAYTTLFLD--------SQIVKWNIEA 405 (635)
T ss_pred EEeecc-CCCcceEEECCCCCEEEeEeec--------ceeEEEehHH
Confidence 333332 2345678999999877777777 8999999976
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=82.23 E-value=3.2 Score=35.07 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCeE
Q 000450 669 PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1496)
Q Consensus 669 ~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~~ 711 (1496)
...|..++|+|..++|+.+..| |.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~--------g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTED--------GEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECC--------CeEEEEEC-CCcC
Confidence 4568999999999999999998 99999988 5554
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=81.02 E-value=60 Score=41.38 Aligned_cols=103 Identities=14% Similarity=0.178 Sum_probs=63.9
Q ss_pred CCCcEEEEECCCCceEEEEcccCCC--------------------E-EEEEECCCCCCCCCCCEEEEEeCCC--------
Q 000450 599 MDCSIRIWDLGSGNLITVMHHHVAP--------------------V-RQIILSPPQTEHPWSDCFLSVGEDF-------- 649 (1496)
Q Consensus 599 ~DgtV~lWDl~tg~~l~~~~~H~~~--------------------V-~~l~~sPd~~~~~~g~~l~Sgs~Dg-------- 649 (1496)
.++.|...|..+|+.+-.+...... | ...++.+. +..+..++.|+
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~------~g~V~vg~~~g~~~~~~~~ 246 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPK------TNLVYVGTGNGSPWNWGGR 246 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCC------CCEEEEECCCCCCCccCCc
Confidence 4688999999999988776542111 1 01222332 45666666554
Q ss_pred ----------cEEEEECCCCcEEEEec--CCCCC----cEEEEEc----CCCC---EEEEEEcCCCCCCCCCCEEEEEEC
Q 000450 650 ----------SVALASLETLRVERMFP--GHPNY----PAKVVWD----CPRG---YIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 650 ----------sV~lWdl~~~~~l~~~~--gH~~~----V~~V~~s----pdg~---~L~tgs~D~sg~~D~dg~V~VWDl 706 (1496)
.|.-+|.++|+.+-.+. .|... .....+. -++. .+++++.+ |.++..|.
T Consensus 247 ~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~--------G~l~ald~ 318 (488)
T cd00216 247 RTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN--------GFFYVLDR 318 (488)
T ss_pred cCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCC--------ceEEEEEC
Confidence 78889999999886653 22110 0001111 1232 57777777 99999999
Q ss_pred CCCeEEEEE
Q 000450 707 KTGARERVL 715 (1496)
Q Consensus 707 ~tg~~~~~l 715 (1496)
++|+.+-..
T Consensus 319 ~tG~~~W~~ 327 (488)
T cd00216 319 TTGKLISAR 327 (488)
T ss_pred CCCcEeeEe
Confidence 999987654
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=80.23 E-value=8.9 Score=49.50 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=27.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEeecCC
Q 000450 101 DNGALISACTDGVLCVWSRSSGHCRRRRKLP 131 (1496)
Q Consensus 101 d~~~LaSas~DG~l~VWdv~~G~ci~~~~l~ 131 (1496)
+..+|++.+.|++||+||+.+++|+....+.
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 6789999999999999999999998876553
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=80.11 E-value=18 Score=46.58 Aligned_cols=106 Identities=12% Similarity=0.044 Sum_probs=66.8
Q ss_pred EEEEeCCCcEEEEEC---CCCceEEEEcccCCCEEEEEECCCC--CCCCCCCEEEEEeCCCcEEEEECCC-----CcEEE
Q 000450 594 LVSGSMDCSIRIWDL---GSGNLITVMHHHVAPVRQIILSPPQ--TEHPWSDCFLSVGEDFSVALASLET-----LRVER 663 (1496)
Q Consensus 594 L~SGs~DgtV~lWDl---~tg~~l~~~~~H~~~V~~l~~sPd~--~~~~~g~~l~Sgs~DgsV~lWdl~~-----~~~l~ 663 (1496)
++..+.|+....... +.+..+..+...... ..+.|++.. ...++|++... .++.|.+.|.++ .+.+.
T Consensus 239 ~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~ 315 (635)
T PRK02888 239 NVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-WVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTR 315 (635)
T ss_pred cceECCCCCEEEEeccCcccCcceeeeccccCc-eEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEE
Confidence 445555666554443 445555554432222 455565531 11233664443 367899999998 45555
Q ss_pred EecCCCCCcEEEEEcCCCCEEEEEEcCCCCCCCCCCEEEEEECCCCe
Q 000450 664 MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 664 ~~~gH~~~V~~V~~spdg~~L~tgs~D~sg~~D~dg~V~VWDl~tg~ 710 (1496)
.++ -...+..|.++|||+++++++.- ..+|.|.|+.+.+
T Consensus 316 yIP-VGKsPHGV~vSPDGkylyVankl-------S~tVSVIDv~k~k 354 (635)
T PRK02888 316 YVP-VPKNPHGVNTSPDGKYFIANGKL-------SPTVTVIDVRKLD 354 (635)
T ss_pred EEE-CCCCccceEECCCCCEEEEeCCC-------CCcEEEEEChhhh
Confidence 555 44567899999999999987764 2789999998754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1496 | ||||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 3e-05 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 3e-05 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 6e-04 |
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1496 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-06 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.004 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.001 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.002 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.004 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.4 bits (137), Expect = 4e-09
Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 14/159 (8%)
Query: 547 RHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606
A L+ + HV + ++ T K L+SGS D +I++W
Sbjct: 173 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 232
Query: 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP 666
D+ +G + + H VR ++ H LS +D ++ + + R +
Sbjct: 233 DVSTGMCLMTLVGHDNWVRGVLF------HSGGKFILSCADDKTLRVWDYKNKRCMKTLN 286
Query: 667 GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705
H ++ + + Y+ D + + +W+
Sbjct: 287 AHEHFVTSLDFHKTAPYVVTGSVDQT--------VKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.7 bits (135), Expect = 8e-09
Identities = 40/235 (17%), Positives = 69/235 (29%), Gaps = 50/235 (21%)
Query: 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVA 622
+ GH V + H V+VS S D +I++WD +G+ + H
Sbjct: 10 KYALSGHRSPVTRVIFH---------PVFSVMVSASEDATIKVWDYETGDFERTLKGHTD 60
Query: 623 PVRQIILSP------------------------------------PQTEHPWSDCFLSVG 646
V+ I + P D +S
Sbjct: 61 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120
Query: 647 EDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706
D ++ + ++T + F GH + V + IA D + V V +
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT-----VRVWVVATK 175
Query: 707 KTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFR 761
+ A R R + S++ +GS + LL D T +
Sbjct: 176 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.7 bits (117), Expect = 1e-06
Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 23/170 (13%)
Query: 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFN-EVLVSGSMDCSIRIWDLGSGNLITVMHHHV 621
+ + + V HR + + ++ S S D ++R+W + + + H
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 185
Query: 622 APVRQIILSPPQTEHPWSDC--------------FLSVGEDFSVALASLETLRVERMFPG 667
V I +P + S+ LS D ++ + + T G
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245
Query: 668 HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717
H N+ V++ +I D + L +WD K + L
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKT--------LRVWDYKNKRCMKTLNA 287
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.3 bits (121), Expect = 4e-07
Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 16/141 (11%)
Query: 579 HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638
V + + VSG+ D S ++WD+ G H + + I P
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF------PN 237
Query: 639 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPA--KVVWDCPRGYIACLCRDHSRTSD 696
+ F + +D + L L + + V + + D +
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN---- 293
Query: 697 AVDVLFIWDVKTGARERVLRG 717
+WD R VL G
Sbjct: 294 ----CNVWDALKADRAGVLAG 310
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.0 bits (110), Expect = 1e-05
Identities = 25/149 (16%), Positives = 44/149 (29%), Gaps = 21/149 (14%)
Query: 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITV 616
V + RQ F GH + + +GS D + R++DL + +
Sbjct: 213 VREGMCRQTFTGHESDINAICFF---------PNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 617 MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVV 676
H +S L+ +DF+ + + GH N + +
Sbjct: 264 YSHDNIICGITSVSF----SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319
Query: 677 WDCPRGYIACLCRDHSRTSDAVDVLFIWD 705
+A D L IW+
Sbjct: 320 VTDDGMAVATGSWDSF--------LKIWN 340
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.3 bits (121), Expect = 5e-07
Identities = 15/69 (21%), Positives = 31/69 (44%)
Query: 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS 650
+E ++SGS D + WD SGN + ++ H V + ++ + P + F + D
Sbjct: 320 DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK 379
Query: 651 VALASLETL 659
+ + +
Sbjct: 380 ARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.0 bits (115), Expect = 3e-06
Identities = 23/141 (16%), Positives = 53/141 (37%), Gaps = 17/141 (12%)
Query: 588 WSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH-------HVAPVRQIILSPPQTEHPWSD 640
+ + +GS+D ++R+WD +G L+ + H V ++ +
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT------RDGQ 267
Query: 641 CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSR----TSD 696
+S D SV L +L+ + + +V + + ++ + + +
Sbjct: 268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 327
Query: 697 AVDVLFIWDVKTGARERVLRG 717
+ WD K+G +L+G
Sbjct: 328 KDRGVLFWDKKSGNPLLMLQG 348
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.7 bits (109), Expect = 1e-05
Identities = 26/156 (16%), Positives = 46/156 (29%), Gaps = 29/156 (18%)
Query: 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP 623
+ GH +V + R + +VSGS+D S+++W+L + N + +
Sbjct: 248 ESGTGHKDSVYSVVFTRD---------GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298
Query: 624 VRQIILSPPQTE------HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN------Y 671
++ + + LS +D V ++ M GH N
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 358
Query: 672 PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707
A D IW K
Sbjct: 359 ANGSSLGPEYNVFATGSGDCK--------ARIWKYK 386
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.9 bits (117), Expect = 1e-06
Identities = 21/172 (12%), Positives = 51/172 (29%), Gaps = 23/172 (13%)
Query: 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVA 622
R GH +V+ + +++G+ D IR++D + + + H
Sbjct: 5 RTTLRGHMTSVITCLQFE----------DNYVITGADDKMIRVYDSINKKFLLQLSGHDG 54
Query: 623 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRG 682
V + + +S D +V + ++ +F GH + + +
Sbjct: 55 GVWALKYAH-------GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 107
Query: 683 YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMN 734
+ T L +W + + + + H +
Sbjct: 108 IKYIVTGSRDNT------LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 153
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 3e-06
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 12/82 (14%)
Query: 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFN-EVLVSGSMDCSIRIWDLGSGNLITVMHHH 620
S + GH V+ F +VSGS D ++++W +G + + H
Sbjct: 8 SPKVLKGHDDHVITC-----------LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH 56
Query: 621 VAPVRQIILSPPQTEHPWSDCF 642
V + +D
Sbjct: 57 TGGVWSSQMRDNIIISGSTDRT 78
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 5e-04
Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 16/159 (10%)
Query: 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVA 622
+ + + L H + + +VSGS+D SIR+WD+ +GN I + H +
Sbjct: 160 KVWDPETETCLHTLQGHTNRVYSLQFD-GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 218
Query: 623 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRG 682
+ L + +S D +V + ++T + + G + + V
Sbjct: 219 LTSGMELKD--------NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 270
Query: 683 YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASH 721
D + +WD+KTG R L S
Sbjct: 271 NFVITSSDDGT-------VKLWDLKTGEFIRNLVTLESG 302
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 11/75 (14%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
+ V CL ++ +VSG D +I+IWD + ++ H V +
Sbjct: 13 ETSKGVYCLQYD-----------DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 61
Query: 628 ILSPPQTEHPWSDCF 642
SD
Sbjct: 62 QYDERVIITGSSDST 76
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (88), Expect = 0.004
Identities = 21/154 (13%), Positives = 44/154 (28%), Gaps = 18/154 (11%)
Query: 588 WSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647
++ +VS S D +I++W+ + + ++ H + + +S
Sbjct: 145 DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL--------QYRDRLVVSGSS 196
Query: 648 DFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707
D ++ L +E R+ GH I D + +WD+
Sbjct: 197 DNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGK--------IKVWDLV 246
Query: 708 TGARERVLRGTASHSMFDHFCKGISMNSISGSVL 741
R GT + +
Sbjct: 247 AALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQI 280
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.7 bits (106), Expect = 2e-05
Identities = 15/130 (11%), Positives = 29/130 (22%), Gaps = 10/130 (7%)
Query: 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLI-TVMHHHV 621
Q GH A+ L++ + + L S + I WD+ +G H
Sbjct: 5 DQVRYGHNKAITALSSS---------ADGKTLFSADAEGHINSWDISTGISNRVFPDVHA 55
Query: 622 APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPR 681
+ I + S + ++ D
Sbjct: 56 TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV 115
Query: 682 GYIACLCRDH 691
+
Sbjct: 116 AACYKHIAIY 125
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 1e-04
Identities = 23/205 (11%), Positives = 50/205 (24%), Gaps = 30/205 (14%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLI------------T 615
H + ++A N VS S D +++WD +
Sbjct: 12 AHDADIFSVSAC-----------NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK 60
Query: 616 VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKV 675
HHV ++ I + + + + +
Sbjct: 61 SGLHHVDVLQAIERDAFE-----LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDS 115
Query: 676 VWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNS 735
+ + R V T + S+S+ ++ + +
Sbjct: 116 DMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG 175
Query: 736 ISGSVLNGNTSVSSLLLPIHEDGTF 760
S + + +S + I E G
Sbjct: 176 TVESPMTPSQFATS--VDISERGLI 198
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.5 bits (95), Expect = 5e-04
Identities = 18/175 (10%), Positives = 30/175 (17%), Gaps = 18/175 (10%)
Query: 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVR 625
GH + L + L+SGS D I W S H +
Sbjct: 9 ISGHNKGITALTVNP-------------LISGSYDGRIMEWSSSSM-----HQDHSNLIV 50
Query: 626 QIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIA 685
+ S Q S + + G
Sbjct: 51 SLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFT 110
Query: 686 CLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSV 740
R + + + + D +
Sbjct: 111 GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP 165
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (93), Expect = 0.001
Identities = 10/76 (13%), Positives = 21/76 (27%), Gaps = 8/76 (10%)
Query: 579 HRMVGTAKGWSFN-EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637
H + +++ + VS D + W G I + V +S
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES-SSVLSCDIS------V 316
Query: 638 WSDCFLSVGEDFSVAL 653
++ D +
Sbjct: 317 DDKYIVTGSGDKKATV 332
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 0.002
Identities = 5/74 (6%), Positives = 16/74 (21%), Gaps = 12/74 (16%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH---HVAPV 624
+ + +L+ S D S+ ++ + + P+
Sbjct: 9 APKDYISDIKII---------PSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59
Query: 625 RQIILSPPQTEHPW 638
+
Sbjct: 60 LCCNFIDNTDLQIY 73
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.004
Identities = 9/68 (13%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 588 WSFNEVLVSGSMDCSIRIWDLGSGNLITV--MHHHVAPVRQIILSPPQTEHPWSDCFLSV 645
W ++ + D +IR+WD+ + + + +Q+ + +S+
Sbjct: 260 WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-----IISL 314
Query: 646 GEDFSVAL 653
D ++
Sbjct: 315 SLDGTLNF 322
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1496 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.98 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.93 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.93 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.9 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.89 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.88 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.88 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.87 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.86 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.86 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.75 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.73 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.72 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.7 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.68 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.64 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.63 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.55 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.49 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.32 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.27 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.26 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.16 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.04 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.83 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.77 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.61 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.58 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.44 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.89 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 96.78 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 96.43 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 96.4 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 96.12 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 94.54 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 93.75 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 93.14 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 93.06 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 92.57 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 92.45 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 91.73 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 91.12 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-30 Score=217.43 Aligned_cols=154 Identities=13% Similarity=0.082 Sum_probs=127.9
Q ss_pred CCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCC
Q ss_conf 78538999962056535989999996992999980454347999884335776267998348866899999217877656
Q 000450 508 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKG 587 (1496)
Q Consensus 508 h~~~Vts~~~is~~~f~P~~lv~Gs~dG~I~I~~~d~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~L~~spd~~~~~~ 587 (1496)
|...++++.+.+... .+++|+.||.+.+| + ..+++....+ .|.+.|++++|+|+
T Consensus 182 ~~~~v~~l~~s~~~~----~~~~~~~d~~v~i~--d-------------~~~~~~~~~~-~~~~~i~~l~~~~~------ 235 (337)
T d1gxra_ 182 HTDGASCIDISNDGT----KLWTGGLDNTVRSW--D-------------LREGRQLQQH-DFTSQIFSLGYCPT------ 235 (337)
T ss_dssp CSSCEEEEEECTTSS----EEEEEETTSEEEEE--E-------------TTTTEEEEEE-ECSSCEEEEEECTT------
T ss_pred CCCCCCCCCCCCCCC----CCCCCCCCCCCCCC--C-------------CCCCEEECCC-CCCCCEEEEEECCC------
T ss_conf 111111012344432----11223566553211--1-------------1110000024-66661579997153------
Q ss_pred CCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECC
Q ss_conf 76897999996999499997999956999802698789999899999999999999996898099998899928899427
Q 000450 588 WSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG 667 (1496)
Q Consensus 588 ~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~~~~l~~~~g 667 (1496)
+..+++|+.|+.+++||+..++.. ....|.++|+++.|+|+ ++.+++++.|+.|++||+.+++++..+.
T Consensus 236 ---~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~------g~~l~s~s~Dg~i~iwd~~~~~~~~~~~- 304 (337)
T d1gxra_ 236 ---GEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYC------GKWFVSTGKDNLLNAWRTPYGASIFQSK- 304 (337)
T ss_dssp ---SSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTT------SSEEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred ---CCCCCEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEECCC------CCEEEEEECCCEEEEEECCCCCEEEECC-
T ss_conf ---030000002564211111111100-00124565416999899------9999999489969999899997999926-
Q ss_pred CCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 999828999949999999997489998899988999989
Q 000450 668 HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 668 H~~~V~~V~wspd~~~Lvtgs~D~s~~~D~dg~I~VWDi 706 (1496)
|...|.+++|+|++++|++++.| ++|+|||+
T Consensus 305 ~~~~v~~~~~s~d~~~l~t~s~D--------~~I~vWdl 335 (337)
T d1gxra_ 305 ESSSVLSCDISVDDKYIVTGSGD--------KKATVYEV 335 (337)
T ss_dssp CSSCEEEEEECTTSCEEEEEETT--------SCEEEEEE
T ss_pred CCCCEEEEEEECCCCEEEEEECC--------CEEEEEEE
T ss_conf 99987999992799999999089--------96999977
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.3e-30 Score=215.06 Aligned_cols=87 Identities=22% Similarity=0.342 Sum_probs=69.4
Q ss_pred ECCCCCCC--------CEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 41899999--------5089999938999799980788599998667899720224884064434467553033320368
Q 000450 9 IWSGTPPS--------HRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRD 80 (1496)
Q Consensus 9 lw~~~~p~--------h~Vtaia~SpDg~~LvTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~d 80 (1496)
.|-|.||. ..|++++|+|++++|+||+.||+|++||+.+ .+....+.+|..+|.+++
T Consensus 2 ~w~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~-----~~~~~~~~~h~~~V~~~~---------- 66 (317)
T d1vyhc1 2 EWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET-----GDFERTLKGHTDSVQDIS---------- 66 (317)
T ss_dssp CCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT-----CCCCEEECCCSSCEEEEE----------
T ss_pred CCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-----CCEEEEEECCCCCEEEEE----------
T ss_conf 36898984489858888768999938989999993899299998999-----979999957888677776----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEE
Q ss_conf 63222222356664455469999899983798199998899817885
Q 000450 81 GKAEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRR 127 (1496)
Q Consensus 81 g~~~~~~~~~~~~~~~~~s~d~~~LvSas~DG~I~VWdv~~G~ci~~ 127 (1496)
+++++.++++++.++.+.+|+.........
T Consensus 67 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (317)
T d1vyhc1 67 -----------------FDHSGKLLASCSADMTIKLWDFQGFECIRT 96 (317)
T ss_dssp -----------------ECTTSSEEEEEETTSCCCEEETTSSCEEEC
T ss_pred -----------------EECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf -----------------301111011111111101110011111111
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-29 Score=213.56 Aligned_cols=150 Identities=21% Similarity=0.203 Sum_probs=118.7
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 99999969929999804543479998843357762679983488668999992178776567689799999699949999
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~I~~~d~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iW 606 (1496)
.+++|+.||.+.+|....... .... ........+|.+.|+++.|+|+ +.++++|+.|+.|++|
T Consensus 219 ~l~~~~~d~~i~i~~~~~~~~------~~~~--~~~~~~~~~h~~~v~~l~~s~~---------~~~l~s~~~d~~i~iw 281 (388)
T d1erja_ 219 YIAAGSLDRAVRVWDSETGFL------VERL--DSENESGTGHKDSVYSVVFTRD---------GQSVVSGSLDRSVKLW 281 (388)
T ss_dssp EEEEEETTSCEEEEETTTCCE------EEEE--C------CCCSSCEEEEEECTT---------SSEEEEEETTSEEEEE
T ss_pred EEEEECCCCEEEEEECCCCCC------CEEE--CCCCCCCCCCCCCEEEEEECCC---------CCEEEEEECCCCEEEE
T ss_conf 589973898199963455730------0010--2443334577898789999799---------9999999789928987
Q ss_pred ECCCCC------------EEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEE
Q ss_conf 799995------------69998026987899998999999999999999968980999988999288994279998289
Q 000450 607 DLGSGN------------LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAK 674 (1496)
Q Consensus 607 Dl~tg~------------~l~~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~~~~l~~~~gH~~~V~~ 674 (1496)
|+..+. .......|...|.++.|+|+ ++++++++.|+.|++||+++++++..+.+|.+.|.+
T Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~ 355 (388)
T d1erja_ 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN------DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355 (388)
T ss_dssp EC---------------CEEEEEECCSSCEEEEEECGG------GCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred ECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCC------CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEE
T ss_conf 51577643210134442001101245532789998899------999999969897999999999699999688997899
Q ss_pred EEE------CCCCCEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf 999------499999999974899988999889999899
Q 000450 675 VVW------DCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 675 V~w------spd~~~Lvtgs~D~s~~~D~dg~I~VWDi~ 707 (1496)
+++ +|++.+|++++.| |+|+||+++
T Consensus 356 ~~~~~~~~~spd~~~l~s~s~D--------g~I~iW~~~ 386 (388)
T d1erja_ 356 VAVANGSSLGPEYNVFATGSGD--------CKARIWKYK 386 (388)
T ss_dssp EEECSSCTTCTTCEEEEEEETT--------SEEEEEEEE
T ss_pred EEEECCCCCCCCCCEEEEEECC--------CEEEEEEEE
T ss_conf 9984674258999999999189--------979997621
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-28 Score=205.62 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=55.1
Q ss_pred CEEEEEECCCCEEEEECCCCCCCC-EEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 979998078859999866789972-0224884064434467553033320368632222223566644554699998999
Q 000450 29 PTLYTGGSDGSILWWSFSDSSYSE-IKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALIS 107 (1496)
Q Consensus 29 ~~LvTGs~DG~I~lWdl~~~~~~~-~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~~~~s~d~~~LvS 107 (1496)
....++..++...+|+... ... ........+|+++|+|++ +++|+.+|+|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~H~~~V~~l~---------------------------fs~dg~~las 79 (388)
T d1erja_ 29 PDALKKQTNDYYILYNPAL--PREIDVELHKSLDHTSVVCCVK---------------------------FSNDGEYLAT 79 (388)
T ss_dssp CTTSEEECSSCEEEECTTS--CCCEEEEEEEEEECSSCCCEEE---------------------------ECTTSSEEEE
T ss_pred CCCCCCCCCCCEEEECCCC--CCCEEEEEEEECCCCCCEEEEE---------------------------ECCCCCEEEE
T ss_conf 5322468897089868877--7620541076079999689999---------------------------9999999999
Q ss_pred EECCCEEEEEECCCCEEEEEECCC
Q ss_conf 837981999988998178853199
Q 000450 108 ACTDGVLCVWSRSSGHCRRRRKLP 131 (1496)
Q Consensus 108 as~DG~I~VWdv~~G~ci~~~~l~ 131 (1496)
++ |++|+|||+.+|+++.....+
T Consensus 80 g~-d~~i~iW~~~~~~~~~~~~~~ 102 (388)
T d1erja_ 80 GC-NKTTQVYRVSDGSLVARLSDD 102 (388)
T ss_dssp EC-BSCEEEEETTTCCEEEEECC-
T ss_pred EE-CCEEEEEEECCCCEEEEECCC
T ss_conf 94-994899981364057663166
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5e-28 Score=202.19 Aligned_cols=141 Identities=18% Similarity=0.256 Sum_probs=128.6
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 99999969929999804543479998843357762679983488668999992178776567689799999699949999
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~I~~~d~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iW 606 (1496)
.+++|..||.+.+| +..++.+...+.+|.+.|++++|+|+ +.++++|+.|+.|++|
T Consensus 198 ~~~~~~~d~~v~i~---------------d~~~~~~~~~~~~h~~~i~~v~~~p~---------~~~l~s~s~d~~i~~~ 253 (340)
T d1tbga_ 198 LFVSGACDASAKLW---------------DVREGMCRQTFTGHESDINAICFFPN---------GNAFATGSDDATCRLF 253 (340)
T ss_dssp EEEEEETTTEEEEE---------------ETTTTEEEEEECCCSSCEEEEEECTT---------SSEEEEEETTSCEEEE
T ss_pred EEEEEECCCEEEEE---------------ECCCCCEEEEEECCCCCEEEEEECCC---------CCEEEEEECCCEEEEE
T ss_conf 26876057369999---------------99999488999578898589999799---------8999999699969997
Q ss_pred ECCCCCEEEEEC--CCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCEE
Q ss_conf 799995699980--269878999989999999999999999689809999889992889942799982899994999999
Q 000450 607 DLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYI 684 (1496)
Q Consensus 607 Dl~tg~~l~~l~--~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~~~~l~~~~gH~~~V~~V~wspd~~~L 684 (1496)
|+........+. .+..+|.++.|+|+ +.++++++.|+.|++||+.+++++..+.+|..+|++++|+|++.+|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l 327 (340)
T d1tbga_ 254 DLRADQELMTYSHDNIICGITSVSFSKS------GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV 327 (340)
T ss_dssp ETTTTEEEEEECCTTCCSCEEEEEECSS------SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCE
T ss_pred EECCCCCCCCCCCCCCCCCEEEEEECCC------CCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEE
T ss_conf 5212211111112244574589999899------9999999797989999999993989984899978999990899999
Q ss_pred EEEECCCCCCCCCCCEEEEEE
Q ss_conf 999748999889998899998
Q 000450 685 ACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 685 vtgs~D~s~~~D~dg~I~VWD 705 (1496)
++++.| |.|+|||
T Consensus 328 ~s~s~D--------g~v~iWd 340 (340)
T d1tbga_ 328 ATGSWD--------SFLKIWN 340 (340)
T ss_dssp EEEETT--------SCEEEEC
T ss_pred EEECCC--------CEEEEEC
T ss_conf 999069--------9799859
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.4e-28 Score=205.88 Aligned_cols=141 Identities=16% Similarity=0.237 Sum_probs=115.6
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 99999969929999804543479998843357762679983488668999992178776567689799999699949999
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~I~~~d~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iW 606 (1496)
.+++|+.||.|++| + ..+......+.+|...|+++.++|+ ++++++|+.|+.|++|
T Consensus 161 ~l~sgs~d~~i~i~--d-------------~~~~~~~~~~~~~~~~i~~v~~~p~---------~~~l~~~~~d~~v~~~ 216 (311)
T d1nr0a1 161 RIISGSDDNTVAIF--E-------------GPPFKFKSTFGEHTKFVHSVRYNPD---------GSLFASTGGDGTIVLY 216 (311)
T ss_dssp EEEEEETTSCEEEE--E-------------TTTBEEEEEECCCSSCEEEEEECTT---------SSEEEEEETTSCEEEE
T ss_pred EECCCCCCCCCCCC--C-------------CCCCCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCCC
T ss_conf 20001122111111--1-------------1111111111111111111234764---------2212111111111000
Q ss_pred ECCCCCEEEEEC-------CCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCC---CCEEEE
Q ss_conf 799995699980-------2698789999899999999999999996898099998899928899427999---828999
Q 000450 607 DLGSGNLITVMH-------HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN---YPAKVV 676 (1496)
Q Consensus 607 Dl~tg~~l~~l~-------~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~~~~l~~~~gH~~---~V~~V~ 676 (1496)
|..++.....+. +|.++|+++.|+|+ ++.+++++.|++|++||++++++++++..|.. .+.++.
T Consensus 217 d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~------~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~ 290 (311)
T d1nr0a1 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD------GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 290 (311)
T ss_dssp ETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT------SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEE
T ss_conf 124464112221111111002465321024788------99999993799699999999969999979998633299999
Q ss_pred ECCCCCEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf 9499999999974899988999889999899
Q 000450 677 WDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 677 wspd~~~Lvtgs~D~s~~~D~dg~I~VWDi~ 707 (1496)
| ++.++++++.| |.|++||++
T Consensus 291 ~--~~~~l~s~s~d--------G~i~~wd~d 311 (311)
T d1nr0a1 291 W--TKQALVSISAN--------GFINFVNPE 311 (311)
T ss_dssp E--CSSCEEEEETT--------CCEEEEETT
T ss_pred E--CCCEEEEEECC--------CEEEEEECC
T ss_conf 5--19999999899--------979999588
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.9e-29 Score=209.05 Aligned_cols=349 Identities=9% Similarity=0.045 Sum_probs=200.5
Q ss_pred CEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 50899999389997999807885999986678997202248840644344675530333203686322222235666445
Q 000450 17 HRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMG 96 (1496)
Q Consensus 17 h~Vtaia~SpDg~~LvTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~~ 96 (1496)
.+|+|++|+||+++||+|+.||.|++||++ +.+......|.||..+|++++
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~---~~~~~~~~~l~gH~~~V~~l~-------------------------- 58 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKS---GNKWVQVHELKEHNGQVTGVD-------------------------- 58 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEE---TTEEEEEEEEECCSSCEEEEE--------------------------
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECC---CCCEEEEEEECCCCCCEEEEE--------------------------
T ss_conf 883899998999999999488989999888---997899999558899888999--------------------------
Q ss_pred CCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 54699998999837981999988998178853199987889479974899959999030023587666531222246643
Q 000450 97 KSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLV 176 (1496)
Q Consensus 97 ~~s~d~~~LvSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~~~~~~ll~~g~~~id~~~l~~~~~~~si~~~~~ 176 (1496)
+++++.+|+|++.|++++|||+.++.......+..
T Consensus 59 -fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-------------------------------------------- 93 (371)
T d1k8kc_ 59 -WAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR-------------------------------------------- 93 (371)
T ss_dssp -EETTTTEEEEEETTSCEEEEEEETTEEEEEEECCC--------------------------------------------
T ss_pred -ECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCC--------------------------------------------
T ss_conf -97999999999799939998620332110012232--------------------------------------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCCC
Q ss_conf 44567888999962799997875079999851764358727999953057887115999918882999997889865322
Q 000450 177 SEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDRE 256 (1496)
Q Consensus 177 ~~d~~~~~~~~~~~~i~i~d~~t~~il~~l~s~~~s~~~i~~~~v~~~~~d~~~~~~lias~dG~i~vW~l~~~~~~~~~ 256 (1496)
. ...+.++.|. |+++ .+++++.+|++++|+++.....
T Consensus 94 ---------------------------------~--~~~v~~i~~~---p~~~--~l~~~s~d~~i~i~~~~~~~~~--- 130 (371)
T d1k8kc_ 94 ---------------------------------I--NRAARCVRWA---PNEK--KFAVGSGSRVISICYFEQENDW--- 130 (371)
T ss_dssp ---------------------------------C--SSCEEEEEEC---TTSS--EEEEEETTSSEEEEEEETTTTE---
T ss_pred ---------------------------------C--CCCCCCCCCC---CCCC--CCEEECCCCCCEEEEEECCCCC---
T ss_conf ---------------------------------2--1100011111---1121--1000002576302544203343---
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCEEEEEECCCCCCCCEEEEECCEEEEECCCCCCEEEEE
Q ss_conf 47875457884100100267545731999902996999991983799975888642115542030485178888505544
Q 000450 257 EGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGA 336 (1496)
Q Consensus 257 ~~~~l~~~ek~i~~~~~~~~~~~~~~~vs~s~~g~~i~~v~~~~~~~~l~d~~~~ige~~~~~~~lc~~~~~~~~~~v~g 336 (1496)
.. .......+...+.+++++|++..+++++.++
T Consensus 131 ~~-----------~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~------------------------------------ 163 (371)
T d1k8kc_ 131 WV-----------CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF------------------------------------ 163 (371)
T ss_dssp EE-----------EEEECTTCCSCEEEEEECTTSSEEEEEETTS------------------------------------
T ss_pred CC-----------CCCCCCCCCCCCCCCCCCCCCCCEECCCCCC------------------------------------
T ss_conf 31-----------1100101112221111111111100013476------------------------------------
Q ss_pred EEEECHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEEECCEEEEEEE
Q ss_conf 87200022210134552355541299992899699999724788776557043067678988502377841220466632
Q 000450 337 MFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRME 416 (1496)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~v~vw~~~G~~~iy~i~~~~~~~~~~~~~~ip~~~~~~~~~~~~~f~~~~~~L~~v~ 416 (1496)
.+.+|.......... +.
T Consensus 164 --------------------------------~v~v~~~~~~~~~~~-------~~------------------------ 180 (371)
T d1k8kc_ 164 --------------------------------KCRIFSAYIKEVEER-------PA------------------------ 180 (371)
T ss_dssp --------------------------------CEEEEECCCTTTSCC-------CC------------------------
T ss_pred --------------------------------EEEEEEECCCCCCCC-------CC------------------------
T ss_conf --------------------------------799984015764310-------01------------------------
Q ss_pred EEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 12103455554457179998234578998530385158705662136654568889401202113356861233456788
Q 000450 417 TVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSR 496 (1496)
Q Consensus 417 s~~~~~~~~~~~~p~v~vwsl~~~~~~~~~~~k~l~~G~~~~~w~~~~~~~~~~dg~~~~~l~~s~~~s~v~~Wd~~~~~ 496 (1496)
...|. .....
T Consensus 181 ---------------~~~~~---~~~~~---------------------------------------------------- 190 (371)
T d1k8kc_ 181 ---------------PTPWG---SKMPF---------------------------------------------------- 190 (371)
T ss_dssp ---------------CBTTB---SCCCT----------------------------------------------------
T ss_pred ---------------CCCCC---CCCCC----------------------------------------------------
T ss_conf ---------------22111---11111----------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 78986201333785389999620565359899999969929999804543479998843357762679983488668999
Q 000450 497 QAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCL 576 (1496)
Q Consensus 497 ~~~~l~~~~~~h~~~Vts~~~is~~~f~P~~lv~Gs~dG~I~I~~~d~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~L 576 (1496)
++.......|...|.++.+.++.. .+++|+.||.+.+|. ..++.....+.+|..+|+++
T Consensus 191 --~~~~~~~~~~~~~v~~~~~s~~g~----~l~s~~~d~~i~iwd---------------~~~~~~~~~~~~~~~~v~s~ 249 (371)
T d1k8kc_ 191 --GELMFESSSSCGWVHGVCFSANGS----RVAWVSHDSTVCLAD---------------ADKKMAVATLASETLPLLAV 249 (371)
T ss_dssp --TCEEEECCCCSSCEEEEEECSSSS----EEEEEETTTEEEEEE---------------GGGTTEEEEEECSSCCEEEE
T ss_pred --EEEEEECCCCCCCEEEEEEECCCC----CCCCCCCCCCCEEEE---------------EECCCCEEEEECCCCCCEEE
T ss_conf --011244047667478987512332----100001478605886---------------41012100000146652036
Q ss_pred EEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEC
Q ss_conf 99217877656768979999969994999979999569998026987899998999999999999999968980999988
Q 000450 577 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1496)
Q Consensus 577 ~~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl 656 (1496)
+|+++ +.++++| .|+.+++|..........+..+............. . ...+. ..|........
T Consensus 250 ~fs~d---------~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~--~~~~~~~~~~~ 313 (371)
T d1k8kc_ 250 TFITE---------SSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT---A-RERFQ--NLDKKASSEGS 313 (371)
T ss_dssp EEEET---------TEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------C---H-HHHHH--HCCCCC-----
T ss_pred EECCC---------CCEEEEE-CCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCC---C-EEEEE--CCCCEEEEECC
T ss_conf 54699---------9799998-19926787760898628872020676542124622---0-01685--06520587124
Q ss_pred CCCCEEEEECCCCCCCEEEEECCCC----CEEEEEECCCCCCCCCCCEEEEEECCC
Q ss_conf 9992889942799982899994999----999999748999889998899998999
Q 000450 657 ETLRVERMFPGHPNYPAKVVWDCPR----GYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 657 ~~~~~l~~~~gH~~~V~~V~wspd~----~~Lvtgs~D~s~~~D~dg~I~VWDi~t 708 (1496)
. .........|.+.|+++.+.+.+ ..+++++.| |.|++||+++
T Consensus 314 ~-~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~D--------g~v~iW~~~~ 360 (371)
T d1k8kc_ 314 A-AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD--------GGMSIWDVRS 360 (371)
T ss_dssp -----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETT--------SEEEEEEHHH
T ss_pred C-CCCCEECCCCCCCEEEEEEECCCCCCEEEEEEECCC--------CEEEEEECCC
T ss_conf 5-566141255569889999948998656799999189--------9399996986
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-27 Score=198.42 Aligned_cols=148 Identities=20% Similarity=0.315 Sum_probs=121.7
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 35989999996992999980454347999884335776267998348866899999217877656768979999969994
Q 000450 523 YAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS 602 (1496)
Q Consensus 523 f~P~~lv~Gs~dG~I~I~~~d~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~Dgt 602 (1496)
+.+..+++|+.||.|++|. ...+.....+.+|...|.++.++ ++++++|+.|+.
T Consensus 185 ~~~~~l~s~~~dg~i~~~d---------------~~~~~~~~~~~~~~~~v~~~~~~-----------~~~l~s~s~d~~ 238 (342)
T d2ovrb2 185 FDGIHVVSGSLDTSIRVWD---------------VETGNCIHTLTGHQSLTSGMELK-----------DNILVSGNADST 238 (342)
T ss_dssp ECSSEEEEEETTSCEEEEE---------------TTTCCEEEEECCCCSCEEEEEEE-----------TTEEEEEETTSC
T ss_pred CCCCEEEEEECCCEEEEEE---------------CCCCEEEEEECCCCCCEEEEECC-----------CCEEEEECCCCE
T ss_conf 8999999995899399952---------------55653656741665320577068-----------999999748988
Q ss_pred EEEEECCCCCEEEEECC---CCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEC-----CCCCCCEE
Q ss_conf 99997999956999802---69878999989999999999999999689809999889992889942-----79998289
Q 000450 603 IRIWDLGSGNLITVMHH---HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-----GHPNYPAK 674 (1496)
Q Consensus 603 I~iWDl~tg~~l~~l~~---H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~~~~l~~~~-----gH~~~V~~ 674 (1496)
|++||+...+....+.. |...+.++.++++ .+++++.|++|++||++++++++.+. +|...|++
T Consensus 239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~ 310 (342)
T d2ovrb2 239 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--------FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 310 (342)
T ss_dssp EEEEETTTCCEEEEECSTTSCSSCEEEEEECSS--------EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEE
T ss_pred EEEEECCCCCCCCCCCCCCEEEECEEECCCCCC--------EEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEE
T ss_conf 999865544221112210001101000013798--------449990899899999999979899862347898897899
Q ss_pred EEECCCCCEEEEEECCCCCCCCCCCEEEEEECCC
Q ss_conf 9994999999999748999889998899998999
Q 000450 675 VVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 675 V~wspd~~~Lvtgs~D~s~~~D~dg~I~VWDi~t 708 (1496)
++|+|++.++++|+.| |+.+ ..|++||...
T Consensus 311 v~~s~~~~~la~g~~d--Gt~~--~~l~~~Df~~ 340 (342)
T d2ovrb2 311 IRASNTKLVCAVGSRN--GTEE--TKLLVLDFDV 340 (342)
T ss_dssp EEECSSEEEEEEECSS--SSSC--CEEEEEECCC
T ss_pred EEECCCCCEEEEEECC--CCCE--EEEEEEECCC
T ss_conf 9987999899999689--9970--4899993899
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.8e-28 Score=200.90 Aligned_cols=77 Identities=25% Similarity=0.330 Sum_probs=64.3
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999938999799980788599998667899720224884064434467553033320368632222223566644554
Q 000450 19 VTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKS 98 (1496)
Q Consensus 19 Vtaia~SpDg~~LvTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~~~~ 98 (1496)
|+|+.+ |+++|+||+.||+|++||+.. .+....+.||+++|++++ +
T Consensus 16 itc~~~--~~~~l~tgs~Dg~i~vWd~~~-----~~~~~~l~~H~~~V~~l~---------------------------~ 61 (355)
T d1nexb2 16 ITCLQF--EDNYVITGADDKMIRVYDSIN-----KKFLLQLSGHDGGVWALK---------------------------Y 61 (355)
T ss_dssp EEEEEE--ETTEEEEEETTTEEEEEETTT-----TEEEEEEECCSSCEEEEE---------------------------E
T ss_pred EEEEEE--CCCEEEEEECCCEEEEEECCC-----CCEEEEEECCCCCEEEEE---------------------------E
T ss_conf 999998--899999991899099998999-----939999978999889999---------------------------8
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCEEEEEECC
Q ss_conf 69999899983798199998899817885319
Q 000450 99 SLDNGALISACTDGVLCVWSRSSGHCRRRRKL 130 (1496)
Q Consensus 99 s~d~~~LvSas~DG~I~VWdv~~G~ci~~~~l 130 (1496)
++ +.+|+|++.||++++|+...+++......
T Consensus 62 s~-~~~l~s~s~D~~i~iw~~~~~~~~~~~~~ 92 (355)
T d1nexb2 62 AH-GGILVSGSTDRTVRVWDIKKGCCTHVFEG 92 (355)
T ss_dssp ET-TTEEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred CC-CCEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 69-99999996452443211111111111100
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.98 E-value=9.8e-28 Score=200.21 Aligned_cols=164 Identities=17% Similarity=0.250 Sum_probs=128.7
Q ss_pred CCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCC----
Q ss_conf 8538999962056535989999996992999980454347999884335776267998348866899999217877----
Q 000450 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT---- 584 (1496)
Q Consensus 509 ~~~Vts~~~is~~~f~P~~lv~Gs~dG~I~I~~~d~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~L~~spd~~~---- 584 (1496)
...+.+..+.++.. .+++|+.||.+++|. ..+......+.+|...+.++.++++...
T Consensus 143 ~~~~~~~~~~~~~~----~l~~~~~d~~v~~~~---------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 203 (317)
T d1vyhc1 143 REWVRMVRPNQDGT----LIASCSNDQTVRVWV---------------VATKECKAELREHRHVVECISWAPESSYSSIS 203 (317)
T ss_dssp SSCEEEEEECTTSS----EEEEEETTSCEEEEE---------------TTTCCEEEEECCCSSCEEEEEECCSCGGGGGG
T ss_pred CCCCEEEECCCCCC----EEEEEECCCEEEEEE---------------ECCCEEEEEEECCCCCCEEEEEEECCCCCEEE
T ss_conf 77630000166799----999992798299975---------------12540347882477873379986325641110
Q ss_pred -------CCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECC
Q ss_conf -------6567689799999699949999799995699980269878999989999999999999999689809999889
Q 000450 585 -------AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 657 (1496)
Q Consensus 585 -------~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~ 657 (1496)
......+..+++|+.|+.|++||+.+++++.++.+|..+|.++.++|+ ++++++++.|+.|++||++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~s~~~dg~i~iwd~~ 277 (317)
T d1vyhc1 204 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSG------GKFILSCADDKTLRVWDYK 277 (317)
T ss_dssp GCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS------SSCEEEEETTTEEEEECCT
T ss_pred CCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC------CCEEEEEECCCEEEEEECC
T ss_conf 3456303430258861475169978999888999688999688998799998799------9999999798949999999
Q ss_pred CCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf 992889942799982899994999999999748999889998899998
Q 000450 658 TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 658 ~~~~l~~~~gH~~~V~~V~wspd~~~Lvtgs~D~s~~~D~dg~I~VWD 705 (1496)
+++++..+.+|...|++++|+|++++|++++.| |+|++||
T Consensus 278 ~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~D--------g~i~iWd 317 (317)
T d1vyhc1 278 NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD--------QTVKVWE 317 (317)
T ss_dssp TSCCCEEEECCSSCEEEEEECSSSSCEEEEETT--------SEEEEEC
T ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEECC--------CEEEEEC
T ss_conf 991999992899988999994999999999289--------9499829
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=3e-26 Score=190.16 Aligned_cols=142 Identities=15% Similarity=0.163 Sum_probs=112.7
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEE-EEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEE
Q ss_conf 9999996992999980454347999884335776267-998348866899999217877656768979999969994999
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSR-QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1496)
Q Consensus 527 ~lv~Gs~dG~I~I~~~d~l~~~d~~~~~~d~~s~~~~-~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~i 605 (1496)
.+++|+.||.+.+|... +.... .....|...|++++|+|+ +.++++++.|+.|++
T Consensus 150 ~l~~g~~dg~i~~~d~~---------------~~~~~~~~~~~~~~~i~~~~~~~~---------~~~l~~~~~d~~i~~ 205 (299)
T d1nr0a2 150 FVAVGGQDSKVHVYKLS---------------GASVSEVKTIVHPAEITSVAFSNN---------GAFLVATDQSRKVIP 205 (299)
T ss_dssp EEEEEETTSEEEEEEEE---------------TTEEEEEEEEECSSCEEEEEECTT---------SSEEEEEETTSCEEE
T ss_pred CCCCCCCCCCCCCCCCC---------------CCCCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCC
T ss_conf 11111111111111111---------------111111111111111111111111---------111111111111111
Q ss_pred EECCCCCEE---EEECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCE--EEEECCCC-CCCEEEEECC
Q ss_conf 979999569---99802698789999899999999999999996898099998899928--89942799-9828999949
Q 000450 606 WDLGSGNLI---TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV--ERMFPGHP-NYPAKVVWDC 679 (1496)
Q Consensus 606 WDl~tg~~l---~~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~~~~--l~~~~gH~-~~V~~V~wsp 679 (1496)
||+.++... ..+..|..+|+++.|+|+ +.++++++.|+.|++||+++... ......|. ..+.++.| +
T Consensus 206 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~------~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~ 278 (299)
T d1nr0a2 206 YSVANNFELAHTNSWTFHTAKVACVSWSPD------NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-L 278 (299)
T ss_dssp EEGGGTTEESCCCCCCCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-E
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEE-C
T ss_conf 111111111111111111111111124666------451388828997999989999731489834898896899997-7
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf 9999999974899988999889999899
Q 000450 680 PRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 680 d~~~Lvtgs~D~s~~~D~dg~I~VWDi~ 707 (1496)
++.+|++++.| +.|++||+.
T Consensus 279 ~~~~l~s~s~D--------~~i~iWdl~ 298 (299)
T d1nr0a2 279 NETTIVSAGQD--------SNIKFWNVP 298 (299)
T ss_dssp ETTEEEEEETT--------SCEEEEECC
T ss_pred CCCEEEEEECC--------CEEEEEECC
T ss_conf 98999999289--------979999444
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1.7e-25 Score=184.99 Aligned_cols=159 Identities=20% Similarity=0.259 Sum_probs=125.1
Q ss_pred EECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEE
Q ss_conf 83488668999992178776567689799999699949999799995699980269878999989999999999999999
Q 000450 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1496)
Q Consensus 566 l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sg 645 (1496)
...+...+.+..+.+. ..++++|+.|+.|++||+++++++.++..|.++|++++|+|+ ++.++++
T Consensus 180 ~~~~~~~~~~~~~~~~---------~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~------~~~l~s~ 244 (340)
T d1tbga_ 180 FTGHTGDVMSLSLAPD---------TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN------GNAFATG 244 (340)
T ss_dssp EECCSSCEEEEEECTT---------SSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTT------SSEEEEE
T ss_pred CCCCCEEEEEECCCCC---------CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC------CCEEEEE
T ss_conf 2331015763001244---------212687605736999999999488999578898589999799------8999999
Q ss_pred ECCCCEEEEECCCCCEEEEE--CCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCE
Q ss_conf 68980999988999288994--2799982899994999999999748999889998899998999908999817788711
Q 000450 646 GEDFSVALASLETLRVERMF--PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSM 723 (1496)
Q Consensus 646 s~DgsV~lwdl~~~~~l~~~--~gH~~~V~~V~wspd~~~Lvtgs~D~s~~~D~dg~I~VWDi~tg~~~~~l~gh~a~~i 723 (1496)
+.|+.+++|+++..+.+..+ ..+...+.++.|+|++.+|++++.| |.|++||+.+++++..+.+|.+.+.
T Consensus 245 s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d--------g~i~iwd~~~~~~~~~~~~H~~~V~ 316 (340)
T d1tbga_ 245 SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD--------FNCNVWDALKADRAGVLAGHDNRVS 316 (340)
T ss_dssp ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETT--------SCEEEEETTTCCEEEEECCCSSCEE
T ss_pred ECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECC--------CEEEEEECCCCCEEEEECCCCCCEE
T ss_conf 69996999752122111111122445745899998999999999797--------9899999999939899848999789
Q ss_pred EEEEECCCCCCCCCCEEECCCCCCCCCCEEECCCCCEEEEC
Q ss_conf 12232164111343427707843433521101499578612
Q 000450 724 FDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1496)
Q Consensus 724 ~~~~~~~~~~~~~sg~i~~g~~~~s~~l~~i~~D~~ir~W~ 764 (1496)
...|++. +.... ....|++++.|+
T Consensus 317 ~l~~s~d------------~~~l~-----s~s~Dg~v~iWd 340 (340)
T d1tbga_ 317 CLGVTDD------------GMAVA-----TGSWDSFLKIWN 340 (340)
T ss_dssp EEEECTT------------SSCEE-----EEETTSCEEEEC
T ss_pred EEEEECC------------CCEEE-----EECCCCEEEEEC
T ss_conf 9999089------------99999-----990699799859
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.4e-24 Score=176.22 Aligned_cols=182 Identities=21% Similarity=0.298 Sum_probs=137.1
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 99999969929999804543479998843357762679983488668999992178776567689799999699949999
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~I~~~d~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iW 606 (1496)
.++.++.||.++++. .........+.+|...+.+..+ + +..+++|+.|++|++|
T Consensus 149 ~~~~~~~d~~i~~~d---------------~~~~~~~~~~~~~~~~~~~~~~--~---------~~~l~s~~~dg~i~~~ 202 (342)
T d2ovrb2 149 RVVSGAYDFMVKVWD---------------PETETCLHTLQGHTNRVYSLQF--D---------GIHVVSGSLDTSIRVW 202 (342)
T ss_dssp CEEEEETTSCEEEEE---------------GGGTEEEEEECCCSSCEEEEEE--C---------SSEEEEEETTSCEEEE
T ss_pred EEEEECCCCEEEEEE---------------CCCCEEEEEECCCCCCCCCCCC--C---------CCEEEEEECCCEEEEE
T ss_conf 024335898699952---------------5234366787275444210068--9---------9999999589939995
Q ss_pred ECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCC---CCCCEEEEECCCCCE
Q ss_conf 79999569998026987899998999999999999999968980999988999288994279---998289999499999
Q 000450 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH---PNYPAKVVWDCPRGY 683 (1496)
Q Consensus 607 Dl~tg~~l~~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~~~~l~~~~gH---~~~V~~V~wspd~~~ 683 (1496)
|+..++++..+..|...+.++.+++ +++++++.|+.+++||+...+....+.++ ...+.++.++ +++
T Consensus 203 d~~~~~~~~~~~~~~~~v~~~~~~~--------~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 272 (342)
T d2ovrb2 203 DVETGNCIHTLTGHQSLTSGMELKD--------NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNF 272 (342)
T ss_dssp ETTTCCEEEEECCCCSCEEEEEEET--------TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSE
T ss_pred ECCCCEEEEEECCCCCCEEEEECCC--------CEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECEEECCCC--CCE
T ss_conf 2556536567416653205770689--------999997489889998655442211122100011010000137--984
Q ss_pred EEEEECCCCCCCCCCCEEEEEECCCCEEEEEEE-----CCCCCCEEEEEECCCCCCCCCCEEECCCCCCCCCCEEECCCC
Q ss_conf 999974899988999889999899990899981-----778871112232164111343427707843433521101499
Q 000450 684 IACLCRDHSRTSDAVDVLFIWDVKTGARERVLR-----GTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDG 758 (1496)
Q Consensus 684 Lvtgs~D~s~~~D~dg~I~VWDi~tg~~~~~l~-----gh~a~~i~~~~~~~~~~~~~sg~i~~g~~~~s~~l~~i~~D~ 758 (1496)
+++++.| |+|++||+++|++++.+. +|.+.+....|.+ ....+..|+.+++. +.
T Consensus 273 ~~s~s~D--------g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~------~~~~la~g~~dGt~-------~~ 331 (342)
T d2ovrb2 273 VITSSDD--------GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN------TKLVCAVGSRNGTE-------ET 331 (342)
T ss_dssp EEEEETT--------SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS------SEEEEEEECSSSSS-------CC
T ss_pred EEEECCC--------CEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECC------CCCEEEEEECCCCC-------EE
T ss_conf 4999089--------989999999997989986234789889789999879------99899999689997-------04
Q ss_pred CEEEECC
Q ss_conf 5786126
Q 000450 759 TFRQSQI 765 (1496)
Q Consensus 759 ~ir~W~l 765 (1496)
+++.|++
T Consensus 332 ~l~~~Df 338 (342)
T d2ovrb2 332 KLLVLDF 338 (342)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
T ss_conf 8999938
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=1.1e-24 Score=179.63 Aligned_cols=166 Identities=18% Similarity=0.188 Sum_probs=133.5
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 26799834886689999921787765676897999996999499997999956999802698789999899999999999
Q 000450 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1496)
Q Consensus 561 ~~~~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~~i~~sPd~~~~~~~~ 640 (1496)
+....+.+|.+.|++++|+|+ ....+++|+.|++|++||+++++....+..|..+|+++.++|+ ++
T Consensus 137 ~~~~~l~~h~~~v~~v~~~~~--------~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~------~~ 202 (311)
T d1nr0a1 137 TSNGNLTGQARAMNSVDFKPS--------RPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD------GS 202 (311)
T ss_dssp CBCBCCCCCSSCEEEEEECSS--------SSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT------SS
T ss_pred CCCCCCCCCCCCCCCCCCCCC--------CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CC
T ss_conf 111111111111111111211--------1012000112211111111111111111111111111234764------22
Q ss_pred EEEEEECCCCEEEEECCCCCEEEEEC-------CCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 99999689809999889992889942-------79998289999499999999974899988999889999899990899
Q 000450 641 CFLSVGEDFSVALASLETLRVERMFP-------GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 641 ~l~Sgs~DgsV~lwdl~~~~~l~~~~-------gH~~~V~~V~wspd~~~Lvtgs~D~s~~~D~dg~I~VWDi~tg~~~~ 713 (1496)
++++++.|+.+++||+++++....+. +|.+.|++++|+|++++|++++.| +.|++||++++++++
T Consensus 203 ~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D--------g~v~iwd~~t~~~~~ 274 (311)
T d1nr0a1 203 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD--------KTIKIWNVATLKVEK 274 (311)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT--------SEEEEEETTTTEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC--------CEEEEEECCCCCEEE
T ss_conf 121111111110001244641122211111110024653210247889999999379--------969999999996999
Q ss_pred EEECCCCCCEEE-EEECCCCCCCCCCEEECCCCCCCCCCEEECCCCCEEEECC
Q ss_conf 981778871112-2321641113434277078434335211014995786126
Q 000450 714 VLRGTASHSMFD-HFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 714 ~l~gh~a~~i~~-~~~~~~~~~~~sg~i~~g~~~~s~~l~~i~~D~~ir~W~l 765 (1496)
++..|....... .+. ..+. .++....|+.++.|++
T Consensus 275 ~l~~~~~~~~~~~~~~------------~~~~-----~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 275 TIPVGTRIEDQQLGII------------WTKQ-----ALVSISANGFINFVNP 310 (311)
T ss_dssp EEECCSSGGGCEEEEE------------ECSS-----CEEEEETTCCEEEEET
T ss_pred EEECCCCCCCEEEEEE------------ECCC-----EEEEEECCCEEEEEEC
T ss_conf 9979998633299999------------5199-----9999989997999958
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.2e-24 Score=179.22 Aligned_cols=158 Identities=16% Similarity=0.123 Sum_probs=110.8
Q ss_pred CCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEE---EECCCCCEEEEEEECCCCC
Q ss_conf 7853899996205653598999999699299998045434799988433577626799---8348866899999217877
Q 000450 508 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY---FLGHTGAVLCLAAHRMVGT 584 (1496)
Q Consensus 508 h~~~Vts~~~is~~~f~P~~lv~Gs~dG~I~I~~~d~l~~~d~~~~~~d~~s~~~~~~---l~gH~~~V~~L~~spd~~~ 584 (1496)
|...|+++.+.+... ..+++++.||.+.+|... +.+.... ..+|...|++++|+|+
T Consensus 158 h~~~v~~~~~~~~~~---~~~~~~~~d~~v~~~d~~---------------~~~~~~~~~~~~~~~~~v~~v~~~pd--- 216 (325)
T d1pgua1 158 HSQRINACHLKQSRP---MRSMTVGDDGSVVFYQGP---------------PFKFSASDRTHHKQGSFVRDVEFSPD--- 216 (325)
T ss_dssp CSSCEEEEEECSSSS---CEEEEEETTTEEEEEETT---------------TBEEEEEECSSSCTTCCEEEEEECST---
T ss_pred CCCCCCCCCCCCCCC---CEEEEEECCCCCCCCCCC---------------CCCCCEECCCCCCCCCCCEEEEECCC---
T ss_conf 123432111123432---068886211122111122---------------11000000001577775277630345---
Q ss_pred CCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEC---CCCCCCCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 6567689799999699949999799995699980269878999989---9999999999999996898099998899928
Q 000450 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILS---PPQTEHPWSDCFLSVGEDFSVALASLETLRV 661 (1496)
Q Consensus 585 ~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~~i~~s---Pd~~~~~~~~~l~Sgs~DgsV~lwdl~~~~~ 661 (1496)
.+.++++++.|+.|++||+++++.+..+.+|..++..+.|+ |+ +++|++++.|++|++||++++++
T Consensus 217 -----~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~d------g~~l~s~s~D~~i~iwd~~~~~~ 285 (325)
T d1pgua1 217 -----SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD------SQKFATVGADATIRVWDVTTSKC 285 (325)
T ss_dssp -----TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESS------SSEEEEEETTSEEEEEETTTTEE
T ss_pred -----CCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCC------CCEEEEEECCCEEEEEECCCCCE
T ss_conf -----3100001123321013430012221111111111111000000368------99999995899399999999978
Q ss_pred EEEECCCCCC--CE--EEEECCCCCEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 8994279998--28--999949999999997489998899988999989
Q 000450 662 ERMFPGHPNY--PA--KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 662 l~~~~gH~~~--V~--~V~wspd~~~Lvtgs~D~s~~~D~dg~I~VWDi 706 (1496)
+..+..|... +. ++.|.+ +.+|++++.| |.|++||+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~d--------g~i~vwdl 325 (325)
T d1pgua1 286 VQKWTLDKQQLGNQQVGVVATG-NGRIISLSLD--------GTLNFYEL 325 (325)
T ss_dssp EEEEECCTTCGGGCEEEEEEEE-TTEEEEEETT--------SCEEEEET
T ss_pred EEEEEECCCCCCCEEEEEEECC-CCEEEEEECC--------CEEEEEEC
T ss_conf 8999954874067699999889-9999999799--------99999979
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.8e-24 Score=175.22 Aligned_cols=181 Identities=15% Similarity=0.217 Sum_probs=124.3
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 99999969929999804543479998843357762679983488668999992178776567689799999699949999
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~I~~~d~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iW 606 (1496)
.+++++.++.+.++. ..++.......+|...|++++|+++ +..+++|+.|+.|++|
T Consensus 155 ~l~s~~~d~~i~~~~---------------~~~~~~~~~~~~~~~~v~~l~~s~~---------~~~~~~~~~d~~v~i~ 210 (337)
T d1gxra_ 155 VCFSCCSDGNIAVWD---------------LHNQTLVRQFQGHTDGASCIDISND---------GTKLWTGGLDNTVRSW 210 (337)
T ss_dssp EEEEEETTSCEEEEE---------------TTTTEEEEEECCCSSCEEEEEECTT---------SSEEEEEETTSEEEEE
T ss_pred CCCCCCCCCCCCCCC---------------CCCCCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCCC
T ss_conf 111111111111111---------------1111111111111111110123444---------3211223566553211
Q ss_pred ECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCEEEE
Q ss_conf 79999569998026987899998999999999999999968980999988999288994279998289999499999999
Q 000450 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIAC 686 (1496)
Q Consensus 607 Dl~tg~~l~~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~~~~l~~~~gH~~~V~~V~wspd~~~Lvt 686 (1496)
|+++++.+..+ .|.++|.++.|+|+ ++.+++++.|+.+++||++..+... ...|...|.++.|+|++++|++
T Consensus 211 d~~~~~~~~~~-~~~~~i~~l~~~~~------~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~v~~s~~g~~l~s 282 (337)
T d1gxra_ 211 DLREGRQLQQH-DFTSQIFSLGYCPT------GEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVS 282 (337)
T ss_dssp ETTTTEEEEEE-ECSSCEEEEEECTT------SSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEE
T ss_pred CCCCCEEECCC-CCCCCEEEEEECCC------CCCCCEECCCCCCCCCCCCCCCCCC-CCCCCCCCCEEEECCCCCEEEE
T ss_conf 11110000024-66661579997153------0300000025642111111111000-0124565416999899999999
Q ss_pred EECCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCEEECCCCCCCCCCEEECCCCCEEEECC
Q ss_conf 9748999889998899998999908999817788711122321641113434277078434335211014995786126
Q 000450 687 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 687 gs~D~s~~~D~dg~I~VWDi~tg~~~~~l~gh~a~~i~~~~~~~~~~~~~sg~i~~g~~~~s~~l~~i~~D~~ir~W~l 765 (1496)
++.| +.|++||..+++.+..+. |...+....|++ + +.. ++....|++++.|++
T Consensus 283 ~s~D--------g~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~----d--------~~~-----l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 283 TGKD--------NLLNAWRTPYGASIFQSK-ESSSVLSCDISV----D--------DKY-----IVTGSGDKKATVYEV 335 (337)
T ss_dssp EETT--------SEEEEEETTTCCEEEEEE-CSSCEEEEEECT----T--------SCE-----EEEEETTSCEEEEEE
T ss_pred EECC--------CEEEEEECCCCCEEEECC-CCCCEEEEEEEC----C--------CCE-----EEEEECCCEEEEEEE
T ss_conf 9489--------969999899997999926-999879999927----9--------999-----999908996999977
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.3e-23 Score=172.19 Aligned_cols=135 Identities=26% Similarity=0.369 Sum_probs=110.1
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 99999969929999804543479998843357762679983488668999992178776567689799999699949999
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1496)
Q Consensus 527 ~lv~Gs~dG~I~I~~~d~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iW 606 (1496)
.++.++.|+.+.+ |+ ..+++....+.+|...|..+.++ +..+++++.|++|++|
T Consensus 150 ~~~~~s~d~~i~~--~d-------------~~~~~~~~~~~~~~~~v~~~~~~-----------~~~l~~~~~dg~i~i~ 203 (293)
T d1p22a2 150 YIVSASGDRTIKV--WN-------------TSTCEFVRTLNGHKRGIACLQYR-----------DRLVVSGSSDNTIRLW 203 (293)
T ss_dssp EEEEEETTSEEEE--EE-------------TTTCCEEEEEECCSSCEEEEEEE-----------TTEEEEEETTSCEEEE
T ss_pred CCCCCCCCCCEEE--EC-------------CCCCCEEEEECCCCCCCCCCCCC-----------CCEEEEECCCCEEEEE
T ss_conf 2011069986041--00-------------78883889971554453221689-----------8758876589989998
Q ss_pred ECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCC---------CCEEEEECCCCCCCEEEEE
Q ss_conf 7999956999802698789999899999999999999996898099998899---------9288994279998289999
Q 000450 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET---------LRVERMFPGHPNYPAKVVW 677 (1496)
Q Consensus 607 Dl~tg~~l~~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~---------~~~l~~~~gH~~~V~~V~w 677 (1496)
|+.+...+..+..|...+.... ++ +..+++++.|+.|++||+.. ..++..+.+|.+.|++++|
T Consensus 204 d~~~~~~~~~~~~~~~~v~~~~--~~------~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~ 275 (293)
T d1p22a2 204 DIECGACLRVLEGHEELVRCIR--FD------NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF 275 (293)
T ss_dssp ETTTCCEEEEECCCSSCEEEEE--CC------SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE
T ss_pred ECCCCEEEEEECCCCEEEEECC--CC------CEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEE
T ss_conf 6655614665214310000014--54------107999867997999988888644456775455784588998899997
Q ss_pred CCCCCEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf 4999999999748999889998899998
Q 000450 678 DCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 678 spd~~~Lvtgs~D~s~~~D~dg~I~VWD 705 (1496)
+ +.+|++++.| ++|++||
T Consensus 276 d--~~~l~s~s~D--------g~i~iWD 293 (293)
T d1p22a2 276 D--EFQIVSSSHD--------DTILIWD 293 (293)
T ss_dssp C--SSCEEECCSS--------SEEEEEC
T ss_pred C--CCEEEEEECC--------CEEEEEC
T ss_conf 1--9999999229--------9899959
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=2e-24 Score=177.84 Aligned_cols=115 Identities=15% Similarity=0.230 Sum_probs=56.8
Q ss_pred EEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEE-EECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCE
Q ss_conf 8999992178776567689799999699949999799995699-980269878999989999999999999999689809
Q 000450 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLIT-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 651 (1496)
Q Consensus 573 V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~-~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV 651 (1496)
+.+++++|+ ++++++|+.|+.|++||+.+++... ....|..+|+++.|+|+ +.++++++.|+.+
T Consensus 139 ~~~~~~s~~---------~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~d~~i 203 (299)
T d1nr0a2 139 SSCVALSND---------KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN------GAFLVATDQSRKV 203 (299)
T ss_dssp EEEEEECTT---------SCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTT------SSEEEEEETTSCE
T ss_pred CCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCC
T ss_conf 332211111---------1111111111111111111111111111111111111111111------1111111111111
Q ss_pred EEEECCCCCEE---EEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCE
Q ss_conf 99988999288---994279998289999499999999974899988999889999899990
Q 000450 652 ALASLETLRVE---RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1496)
Q Consensus 652 ~lwdl~~~~~l---~~~~gH~~~V~~V~wspd~~~Lvtgs~D~s~~~D~dg~I~VWDi~tg~ 710 (1496)
++||+.++..+ ..+.+|...|++++|+|++.+|++++.| +.|++||++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~d--------g~i~iwd~~~~~ 257 (299)
T d1nr0a2 204 IPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD--------NSVIVWNMNKPS 257 (299)
T ss_dssp EEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT--------SCEEEEETTCTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC--------CEEEEEECCCCC
T ss_conf 111111111111111111111111111246664513888289--------979999899997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3.8e-22 Score=162.38 Aligned_cols=132 Identities=14% Similarity=0.176 Sum_probs=96.1
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEE------CCCCCCEEEEEECCCCCCCCCCCEE
Q ss_conf 8866899999217877656768979999969994999979999569998------0269878999989999999999999
Q 000450 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM------HHHVAPVRQIILSPPQTEHPWSDCF 642 (1496)
Q Consensus 569 H~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l------~~H~~~V~~i~~sPd~~~~~~~~~l 642 (1496)
+...+++++|+|+ .++++|+.|++|++||+.+++++..+ .+|..+|++++|+|+ ++++
T Consensus 183 ~~~~~~~v~~s~d----------g~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd------g~~l 246 (393)
T d1sq9a_ 183 PSQFATSVDISER----------GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ------GSLL 246 (393)
T ss_dssp SCCCCCEEEECTT----------SEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS------TTEE
T ss_pred CCCCEEEEEECCC----------CEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCC------CCEE
T ss_conf 8986789997899----------98999938982999860233211000011111242563877004665------3201
Q ss_pred EEEECCCC---EEEEECCCCCEEEEEC-------------CCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 99968980---9999889992889942-------------7999828999949999999997489998899988999989
Q 000450 643 LSVGEDFS---VALASLETLRVERMFP-------------GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 643 ~Sgs~Dgs---V~lwdl~~~~~l~~~~-------------gH~~~V~~V~wspd~~~Lvtgs~D~s~~~D~dg~I~VWDi 706 (1496)
++++.|++ +++||+++++++..+. +|...|++++|+|++++|++++.| ++|++||+
T Consensus 247 ~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D--------~~v~vWd~ 318 (393)
T d1sq9a_ 247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD--------GKLRFWDV 318 (393)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT--------SEEEEEET
T ss_pred EEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCC--------CEEEEEEC
T ss_conf 1242898842100103532134443115666643102320235866600138988806987799--------98999999
Q ss_pred CCCEEEEEEECCCCCCEE
Q ss_conf 999089998177887111
Q 000450 707 KTGARERVLRGTASHSMF 724 (1496)
Q Consensus 707 ~tg~~~~~l~gh~a~~i~ 724 (1496)
++|++++++.||...+..
T Consensus 319 ~~g~~~~~l~gH~~~v~~ 336 (393)
T d1sq9a_ 319 KTKERITTLNMHCDDIEI 336 (393)
T ss_dssp TTTEEEEEEECCGGGCSS
T ss_pred CCCCEEEEECCCCCCCCC
T ss_conf 999799999886876137
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=6.9e-23 Score=167.37 Aligned_cols=147 Identities=14% Similarity=0.243 Sum_probs=116.7
Q ss_pred EEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCCCCEEEEE-ECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEE
Q ss_conf 999999699-2999980454347999884335776267998-34886689999921787765676897999996999499
Q 000450 527 AIVYGFFSG-EIEVIQFDLFERHNSPGASLKVNSHVSRQYF-LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR 604 (1496)
Q Consensus 527 ~lv~Gs~dG-~I~I~~~d~l~~~d~~~~~~d~~s~~~~~~l-~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~ 604 (1496)
.+++++.++ .+++|... .......+ ..|.+.+++++|+|+ +.+|++|+.|+.|+
T Consensus 132 ~~~v~~~~~~~v~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~s~~---------~~~l~~g~~dg~i~ 187 (287)
T d1pgua2 132 YVAVGLEEGNTIQVFKLS---------------DLEVSFDLKTPLRAKPSYISISPS---------ETYIAAGDVMGKIL 187 (287)
T ss_dssp EEEEEETTTSCEEEEETT---------------EEEEEEECSSCCSSCEEEEEECTT---------SSEEEEEETTSCEE
T ss_pred CEEEECCCCCEEEEEECC---------------CCCEEEEEEECCCCCEEEEEECCC---------CCCCCCCCCCCCCC
T ss_conf 111000221000210001---------------221000121024785369995167---------65211011111100
Q ss_pred EEECCCCCEEE-EECCCCCCEEEEEECCCCCC----CCCCCEEEEEECCCCEEEEECCC-CCEEEEECCCCCCCEEEEEC
Q ss_conf 99799995699-98026987899998999999----99999999996898099998899-92889942799982899994
Q 000450 605 IWDLGSGNLIT-VMHHHVAPVRQIILSPPQTE----HPWSDCFLSVGEDFSVALASLET-LRVERMFPGHPNYPAKVVWD 678 (1496)
Q Consensus 605 iWDl~tg~~l~-~l~~H~~~V~~i~~sPd~~~----~~~~~~l~Sgs~DgsV~lwdl~~-~~~l~~~~gH~~~V~~V~ws 678 (1496)
+||+.++.... .+..|.++|.++.|+|.... ...+.++++++.|++|++||+++ .+.+..+.+|...|+++.|+
T Consensus 188 i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~ 267 (287)
T d1pgua2 188 LYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE 267 (287)
T ss_dssp EEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEE
T ss_pred CEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEC
T ss_conf 00002332110001111111100000136541001267887027664999599988899975899927878985899998
Q ss_pred CCCCEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 9999999997489998899988999989
Q 000450 679 CPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 679 pd~~~Lvtgs~D~s~~~D~dg~I~VWDi 706 (1496)
|++ .+++++.| ++|++|++
T Consensus 268 ~~~-~l~s~g~D--------~~v~iW~i 286 (287)
T d1pgua2 268 TPS-TLVSSGAD--------ACIKRWNV 286 (287)
T ss_dssp ETT-EEEEEETT--------SCEEEEEE
T ss_pred CCC-EEEEEECC--------CEEEEEEE
T ss_conf 999-89999799--------92999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=2.7e-23 Score=170.17 Aligned_cols=130 Identities=12% Similarity=0.013 Sum_probs=63.6
Q ss_pred CCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCC-CCCCCCCC--CCCCCEEEEEECCCCCEEEEEEECCCCCC
Q ss_conf 8538999962056535989999996992999980454347-99988433--57762679983488668999992178776
Q 000450 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH-NSPGASLK--VNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1496)
Q Consensus 509 ~~~Vts~~~is~~~f~P~~lv~Gs~dG~I~I~~~d~l~~~-d~~~~~~d--~~s~~~~~~l~gH~~~V~~L~~spd~~~~ 585 (1496)
...|++..+.++.. .+++|+.||.+++|........ ......|. ...+.......+|.+.|.+++|+|+
T Consensus 141 ~~~v~~v~~~p~~~----~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---- 212 (371)
T d1k8kc_ 141 RSTVLSLDWHPNSV----LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN---- 212 (371)
T ss_dssp CSCEEEEEECTTSS----EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS----
T ss_pred CCCCCCCCCCCCCC----CEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECC----
T ss_conf 12221111111111----1000134767999840157643100122111111110112440476674789875123----
Q ss_pred CCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCC
Q ss_conf 5676897999996999499997999956999802698789999899999999999999996898099998899
Q 000450 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1496)
Q Consensus 586 ~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~ 658 (1496)
++.+++++.|++|++||+..+..+..+..|..+|.++.|+|+ +.++++ +.|+.+.+|..+.
T Consensus 213 -----g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d------~~~la~-g~d~~~~~~~~~~ 273 (371)
T d1k8kc_ 213 -----GSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITE------SSLVAA-GHDCFPVLFTYDS 273 (371)
T ss_dssp -----SSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEET------TEEEEE-ETTSSCEEEEEET
T ss_pred -----CCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEEECCC------CCEEEE-ECCCCEEEEEEEC
T ss_conf -----321000014786058864101210000014665203654699------979999-8199267877608
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.9e-22 Score=164.44 Aligned_cols=148 Identities=14% Similarity=0.135 Sum_probs=117.4
Q ss_pred CCEEEEEEECCCCCCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCC
Q ss_conf 53899996205653598-99999969929999804543479998843357762679983488668999992178776567
Q 000450 510 KIVSSSMVISESFYAPY-AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW 588 (1496)
Q Consensus 510 ~~Vts~~~is~~~f~P~-~lv~Gs~dG~I~I~~~d~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~L~~spd~~~~~~~ 588 (1496)
..+.++. |+|+ .+++|+.||.|++|.... + + ..........+.+|...|++++|+|+
T Consensus 185 ~~~~~v~------~s~dg~lasgs~Dg~i~iwd~~~--~-----~--~~~~~~~~~~l~~h~~~V~~l~~spd------- 242 (393)
T d1sq9a_ 185 QFATSVD------ISERGLIATGFNNGTVQISELST--L-----R--PLYNFESQHSMINNSNSIRSVKFSPQ------- 242 (393)
T ss_dssp CCCCEEE------ECTTSEEEEECTTSEEEEEETTT--T-----E--EEEEEECCC---CCCCCEEEEEECSS-------
T ss_pred CCEEEEE------ECCCCEEEEEECCCCEEEEEECC--C-----C--CCCCCCCCCCCCCCCCEEEECCCCCC-------
T ss_conf 8678999------78999899993898299986023--3-----2--11000011111242563877004665-------
Q ss_pred CCCCEEEEEECCCC---EEEEECCCCCEEEEEC-------------CCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEE
Q ss_conf 68979999969994---9999799995699980-------------2698789999899999999999999996898099
Q 000450 589 SFNEVLVSGSMDCS---IRIWDLGSGNLITVMH-------------HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 652 (1496)
Q Consensus 589 ~~~~~LvSGs~Dgt---I~iWDl~tg~~l~~l~-------------~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~ 652 (1496)
+++|++|+.|++ |++||+.+++.+..+. +|.+.|++++|+|+ +++++|++.|++|+
T Consensus 243 --g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd------~~~l~S~s~D~~v~ 314 (393)
T d1sq9a_ 243 --GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS------GETLCSAGWDGKLR 314 (393)
T ss_dssp --TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS------SSEEEEEETTSEEE
T ss_pred --CCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCC------CCEEEEECCCCEEE
T ss_conf --3201124289884210010353213444311566664310232023586660013898------88069877999899
Q ss_pred EEECCCCCEEEEECCCCCCCE----EEEECCCCCEEEEE
Q ss_conf 998899928899427999828----99994999999999
Q 000450 653 LASLETLRVERMFPGHPNYPA----KVVWDCPRGYIACL 687 (1496)
Q Consensus 653 lwdl~~~~~l~~~~gH~~~V~----~V~wspd~~~Lvtg 687 (1496)
+||+++++++..+.+|...|. .+.|+|++..++++
T Consensus 315 vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 315 FWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp EEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred EEECCCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEEC
T ss_conf 999999979999988687613773489999999999983
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.4e-22 Score=165.33 Aligned_cols=88 Identities=9% Similarity=0.059 Sum_probs=70.4
Q ss_pred CCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999508999993899979998078859999866789972022488406443446755303332036863222222356
Q 000450 12 GTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENS 91 (1496)
Q Consensus 12 ~~~p~h~Vtaia~SpDg~~LvTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~ 91 (1496)
..+|...|++++|+||+++|+||+.||+|++||+.. ...........+|.++|++++|
T Consensus 7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~--~~~~~~~~~~~~h~~~V~~v~f-------------------- 64 (342)
T d1yfqa_ 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDI--QAKNVDLLQSLRYKHPLLCCNF-------------------- 64 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEET--TTTEEEEEEEEECSSCEEEEEE--------------------
T ss_pred CCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC--CCCCEEEEEECCCCCCEEEEEE--------------------
T ss_conf 889989788899958999999997999299997569--9863689885589998899999--------------------
Q ss_pred CCCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEE
Q ss_conf 664455469999899983798199998899817885
Q 000450 92 SNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRR 127 (1496)
Q Consensus 92 ~~~~~~~s~d~~~LvSas~DG~I~VWdv~~G~ci~~ 127 (1496)
...++.+|+|++.||.+++|+...+.....
T Consensus 65 ------~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~ 94 (342)
T d1yfqa_ 65 ------IDNTDLQIYVGTVQGEILKVDLIGSPSFQA 94 (342)
T ss_dssp ------EESSSEEEEEEETTSCEEEECSSSSSSEEE
T ss_pred ------ECCCCCEEEECCCCCCEEEEECCCCCCCCC
T ss_conf ------589997899812653114542044320000
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=5.4e-23 Score=168.13 Aligned_cols=170 Identities=13% Similarity=0.087 Sum_probs=132.7
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEC---CCCCCEEEEEECCCCCC
Q ss_conf 762679983488668999992178776567689799999699949999799995699980---26987899998999999
Q 000450 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH---HHVAPVRQIILSPPQTE 635 (1496)
Q Consensus 559 s~~~~~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~---~H~~~V~~i~~sPd~~~ 635 (1496)
++.+...+.+|...|++++|+++ ....+++++.|+.+++||...++....+. .|...|.++.|+|+.
T Consensus 148 ~~~~~~~~~~h~~~v~~~~~~~~--------~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~-- 217 (325)
T d1pgua1 148 SGNSLGEVSGHSQRINACHLKQS--------RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS-- 217 (325)
T ss_dssp TCCEEEECCSCSSCEEEEEECSS--------SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT--
T ss_pred CCCCCEEEEECCCCCCCCCCCCC--------CCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCC--
T ss_conf 33110012001234321111234--------32068886211122111122110000000015777752776303453--
Q ss_pred CCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEEEEC---CCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEE
Q ss_conf 9999999999689809999889992889942799982899994---9999999997489998899988999989999089
Q 000450 636 HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWD---CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1496)
Q Consensus 636 ~~~~~~l~Sgs~DgsV~lwdl~~~~~l~~~~gH~~~V~~V~ws---pd~~~Lvtgs~D~s~~~D~dg~I~VWDi~tg~~~ 712 (1496)
+..+++++.|+.|++||+++++++..+.+|..++..+.|+ |++.+|++++.| +.|+|||+++++++
T Consensus 218 ---~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D--------~~i~iwd~~~~~~~ 286 (325)
T d1pgua1 218 ---GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD--------ATIRVWDVTTSKCV 286 (325)
T ss_dssp ---CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT--------SEEEEEETTTTEEE
T ss_pred ---CEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECC--------CEEEEEECCCCCEE
T ss_conf ---1000011233210134300122211111111111110000003689999999589--------93999999999788
Q ss_pred EEEECCCCCCEE--EEEECCCCCCCCCCEEECCCCCCCCCCEEECCCCCEEEECC
Q ss_conf 998177887111--22321641113434277078434335211014995786126
Q 000450 713 RVLRGTASHSMF--DHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1496)
Q Consensus 713 ~~l~gh~a~~i~--~~~~~~~~~~~~sg~i~~g~~~~s~~l~~i~~D~~ir~W~l 765 (1496)
+.+..|...... ..++ . .....++....|++++.|+|
T Consensus 287 ~~~~~~~~~~~~~~~~~~------------~----~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 287 QKWTLDKQQLGNQQVGVV------------A----TGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEECCTTCGGGCEEEEE------------E----EETTEEEEEETTSCEEEEET
T ss_pred EEEEECCCCCCCEEEEEE------------E----CCCCEEEEEECCCEEEEEEC
T ss_conf 999954874067699999------------8----89999999979999999979
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=9.5e-21 Score=152.91 Aligned_cols=123 Identities=17% Similarity=0.200 Sum_probs=92.3
Q ss_pred CCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEE-EEEECCCCCEEEEEEECCCCCC-
Q ss_conf 78538999962056535989999996992999980454347999884335776267-9983488668999992178776-
Q 000450 508 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSR-QYFLGHTGAVLCLAAHRMVGTA- 585 (1496)
Q Consensus 508 h~~~Vts~~~is~~~f~P~~lv~Gs~dG~I~I~~~d~l~~~d~~~~~~d~~s~~~~-~~l~gH~~~V~~L~~spd~~~~- 585 (1496)
+...++++.+.++.. .+++|+.||.+.+|... ++... ..+.+|.+.|++++|+|.....
T Consensus 161 ~~~~v~~~~~s~~~~----~l~~g~~dg~i~i~d~~---------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 221 (287)
T d1pgua2 161 LRAKPSYISISPSET----YIAAGDVMGKILLYDLQ---------------SREVKTSRWAFRTSKINAISWKPAEKGAN 221 (287)
T ss_dssp CSSCEEEEEECTTSS----EEEEEETTSCEEEEETT---------------TTEEEECCSCCCSSCEEEEEECCCC----
T ss_pred CCCCEEEEEECCCCC----CCCCCCCCCCCCCEEEC---------------CCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 478536999516765----21101111110000002---------------33211000111111110000013654100
Q ss_pred CCCCCCCEEEEEECCCCEEEEECCC-CCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEC
Q ss_conf 5676897999996999499997999-9569998026987899998999999999999999968980999988
Q 000450 586 KGWSFNEVLVSGSMDCSIRIWDLGS-GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1496)
Q Consensus 586 ~~~~~~~~LvSGs~DgtI~iWDl~t-g~~l~~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl 656 (1496)
....++.++++|+.|++|++||+.. .+.+..+.+|.+.|+++.|+|+ + .+++++.|++|++|++
T Consensus 222 ~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~------~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 222 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP------S-TLVSSGADACIKRWNV 286 (287)
T ss_dssp --CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET------T-EEEEEETTSCEEEEEE
T ss_pred CCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCC------C-EEEEEECCCEEEEEEE
T ss_conf 126788702766499959998889997589992787898589999899------9-8999979992999997
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.89 E-value=1.8e-18 Score=137.50 Aligned_cols=101 Identities=13% Similarity=0.050 Sum_probs=73.3
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCCCCCCCEEE-------EEECCCCEEEEECCCCCEEEEE---------CCCCCCCE
Q ss_conf 9956999802698789999899999999999999-------9968980999988999288994---------27999828
Q 000450 610 SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFL-------SVGEDFSVALASLETLRVERMF---------PGHPNYPA 673 (1496)
Q Consensus 610 tg~~l~~l~~H~~~V~~i~~sPd~~~~~~~~~l~-------Sgs~DgsV~lwdl~~~~~l~~~---------~gH~~~V~ 673 (1496)
.++....+.+|...+..+.|+|+ +..++ +++.|++|++||++++++..++ ..|...+.
T Consensus 292 ~~~~~~~l~g~~~~v~~v~~sPd------g~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~ 365 (426)
T d1hzua2 292 AWKKVAELQGQGGGSLFIKTHPK------SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVV 365 (426)
T ss_dssp BTSEEEEEECSSSCCCCEECCTT------CSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEE
T ss_pred CCEEEEEEECCCCCEEEEECCCC------CCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCCEE
T ss_conf 02586898668876367874899------861888506798802288799998987876708950211025677885189
Q ss_pred EEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEECCC
Q ss_conf 9999499999999974899988999889999899990899981778
Q 000450 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1496)
Q Consensus 674 ~V~wspd~~~Lvtgs~D~s~~~D~dg~I~VWDi~tg~~~~~l~gh~ 719 (1496)
.+.|+|||+++++.+.. +.+.++.|+|||.+|+++..++.++.
T Consensus 366 ~~~fSpDGk~i~vs~~~---~~~~~~~i~v~D~~T~k~~~~i~~~~ 408 (426)
T d1hzua2 366 QPEYNKRGDEVWFSVWN---GKNDSSALVVVDDKTLKLKAVVKDPR 408 (426)
T ss_dssp EEEECSSSSEEEEEECC---CTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred EEEECCCCCEEEEEEEC---CCCCCCEEEEEECCCCEEEEEECCCC
T ss_conf 87999999999999724---88889829999999873899987898
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=1.9e-19 Score=144.14 Aligned_cols=146 Identities=16% Similarity=0.119 Sum_probs=101.7
Q ss_pred CEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEE
Q ss_conf 89999996992999980454347999884335776267998348866899999217877656768979999969994999
Q 000450 526 YAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1496)
Q Consensus 526 ~~lv~Gs~dG~I~I~~~d~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~i 605 (1496)
..++.++.||.+++|.+.... ..........+...+.+..+.+. ++..+++++.|+.+.+
T Consensus 161 ~~~~~~~~d~~i~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~s~dg~~~v 220 (342)
T d1yfqa_ 161 SRLIVGMNNSQVQWFRLPLCE------------DDNGTIEESGLKYQIRDVALLPK--------EQEGYACSSIDGRVAV 220 (342)
T ss_dssp SEEEEEESTTEEEEEESSCCT------------TCCCEEEECSCSSCEEEEEECSG--------GGCEEEEEETTSEEEE
T ss_pred CCEEEECCCCCEEEEECCCCC------------CCCEEEEECCCCCCEEEEEEECC--------CCCEEEEECCCCEEEE
T ss_conf 702465179847887605676------------34111210254221014676369--------9987886548995999
Q ss_pred EECCCCCEE------E---------EECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCC
Q ss_conf 979999569------9---------9802698789999899999999999999996898099998899928899427999
Q 000450 606 WDLGSGNLI------T---------VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1496)
Q Consensus 606 WDl~tg~~l------~---------~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~~~~l~~~~gH~~ 670 (1496)
|+....... . ....|...|+++.|+|+ +++|++++.||+|++||+++++.+..+..+ .
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~------~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~ 293 (342)
T d1yfqa_ 221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR------HKFLYTAGSDGIISCWNLQTRKKIKNFAKF-N 293 (342)
T ss_dssp EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT------TCCEEEEETTSCEEEEETTTTEEEEECCCC-S
T ss_pred EEECCCCCEEECCCCCEEEEEEECCCCCCCCCCCEEEEECCC------CCEEEEECCCCEEEEEECCCCCEEEEECCC-C
T ss_conf 980598640111235125655531477762354315996698------447999879998999999989498870589-9
Q ss_pred CCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 828999949999999997489998899988999989
Q 000450 671 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1496)
Q Consensus 671 ~V~~V~wspd~~~Lvtgs~D~s~~~D~dg~I~VWDi 706 (1496)
.+..++|+|+++++++++.| +.+++|..
T Consensus 294 ~~~~~~~s~~~~~l~~a~sd--------d~~~~~~~ 321 (342)
T d1yfqa_ 294 EDSVVKIACSDNILCLATSD--------DTFKTNAA 321 (342)
T ss_dssp SSEEEEEEECSSEEEEEEEC--------THHHHCSS
T ss_pred CCEEEEEEECCCEEEEEECC--------CCEEEEEE
T ss_conf 98799999479999999919--------92788301
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=1e-19 Score=145.95 Aligned_cols=162 Identities=20% Similarity=0.264 Sum_probs=118.4
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCE
Q ss_conf 59899999969929999804543479998843357762679983488668999992178776567689799999699949
Q 000450 524 APYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSI 603 (1496)
Q Consensus 524 ~P~~lv~Gs~dG~I~I~~~d~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI 603 (1496)
.+..++.+..|+.+.+ |+ ..+++......++...+.++.++++ +..+++++.|++|
T Consensus 170 ~~~~~~~~~~d~~i~~--~d-------------~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~d~~i 225 (355)
T d1nexb2 170 HGNIVVSGSYDNTLIV--WD-------------VAQMKCLYILSGHTDRIYSTIYDHE---------RKRCISASMDTTI 225 (355)
T ss_dssp ETTEEEEEETTSCEEE--EE-------------TTTTEEEEEECCCSSCEEEEEEETT---------TTEEEEEETTSCE
T ss_pred CCCEEEEECCCCEEEE--EE-------------CCCCCCEEEEECCCCCCCCCCCCCC---------CEEEECCCCCCEE
T ss_conf 5633442114420444--30-------------1311000110001233211111121---------0021012456368
Q ss_pred EEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEE-EECCCCC
Q ss_conf 999799995699980269878999989999999999999999689809999889992889942799982899-9949999
Q 000450 604 RIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKV-VWDCPRG 682 (1496)
Q Consensus 604 ~iWDl~tg~~l~~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~~~~l~~~~gH~~~V~~V-~wspd~~ 682 (1496)
++||+.++..+..+.+|..+|.++.++++ .+++++.|++|++||+++...... .|...+..+ .+++++.
T Consensus 226 ~i~d~~~~~~~~~~~~h~~~v~~~~~~~~--------~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~ 295 (355)
T d1nexb2 226 RIWDLENGELMYTLQGHTALVGLLRLSDK--------FLVSAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFYVSDN 295 (355)
T ss_dssp EEEETTTCCEEEEECCCSSCCCEEEECSS--------EEEEECTTSEEEEEETTTCCEEEE--EECTTCCCCCEEEECSS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCC--------EEEEEECCCCCCCCCCCCCCEECC--CCCCCCEEEEEECCCCC
T ss_conf 76301221111111111111111123210--------033320111111111111110001--24688229999849998
Q ss_pred EEEEEECCCCCCCCCCCEEEEEECCCCEEEE-EEECCCCCCEEEEEE
Q ss_conf 9999974899988999889999899990899-981778871112232
Q 000450 683 YIACLCRDHSRTSDAVDVLFIWDVKTGARER-VLRGTASHSMFDHFC 728 (1496)
Q Consensus 683 ~Lvtgs~D~s~~~D~dg~I~VWDi~tg~~~~-~l~gh~a~~i~~~~~ 728 (1496)
++++ +.| +.|++||+++|++++ .+.+|...+....|.
T Consensus 296 ~l~~-g~d--------~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~ 333 (355)
T d1nexb2 296 ILVS-GSE--------NQFNIYNLRSGKLVHANILKDADQIWSVNFK 333 (355)
T ss_dssp EEEE-EET--------TEEEEEETTTCCBCCSCTTTTCSEEEEEEEE
T ss_pred EEEE-EEC--------CEEEEEECCCCCEEEEEECCCCCCEEEEEEC
T ss_conf 9999-809--------9799999999979888845899989999983
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=5.2e-20 Score=147.91 Aligned_cols=125 Identities=10% Similarity=-0.049 Sum_probs=93.5
Q ss_pred ECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf 34886689999921787765676897999996999499997999956999802698789999899999999999999996
Q 000450 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 646 (1496)
Q Consensus 567 ~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs 646 (1496)
..|...|....+.++ +..+++++.|.+.++|+..+.. .|.....++.+ || ++.+++++
T Consensus 290 ~~~~~~v~~~~~~~~---------g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-pD------g~~la~~s 347 (432)
T d1qksa2 290 PDNAWKILDSFPALG---------GGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-FD------IKAMTGDG 347 (432)
T ss_dssp TTTBTSEEEEEECSC---------SCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-EE------GGGCCCSS
T ss_pred CCCCCEEEEEEECCC---------CCEEEEEECCCCCCEEECCCCC------CCCCEEEEEEE-EE------CHHHCCCC
T ss_conf 465657779988689---------9768887268864102112678------88770359999-96------24610455
Q ss_pred CCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEECCC
Q ss_conf 8980999988999288994279998289999499999999974899988999889999899990899981778
Q 000450 647 EDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1496)
Q Consensus 647 ~DgsV~lwdl~~~~~l~~~~gH~~~V~~V~wspd~~~Lvtgs~D~s~~~D~dg~I~VWDi~tg~~~~~l~gh~ 719 (1496)
.|+++++|++.++..+ ..|...+..+.|+|||++++.++.. +++.++.|.|||.+|+++.+++++..
T Consensus 348 ~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~DG~~v~~S~~~---~~~~~g~i~i~D~~T~k~~~~i~~~~ 414 (432)
T d1qksa2 348 SDPEFKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWN---GKDQESALVVVDDKTLELKHVIKDER 414 (432)
T ss_dssp SCCCEEEECHHHHHTC---CSSCCEEEEEEECTTSSEEEEEEEC---CTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred CCCCEEECCCCCCCCC---CCCCCCEEEEEECCCCCEEEEEEEC---CCCCCCCEEEEECCCCEEEEEECCCC
T ss_conf 6784486334344445---7899868976798999999999704---88888868999999955886846888
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=4.2e-19 Score=141.79 Aligned_cols=99 Identities=22% Similarity=0.336 Sum_probs=79.4
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 35989999996992999980454347999884335776267998348866899999217877656768979999969994
Q 000450 523 YAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS 602 (1496)
Q Consensus 523 f~P~~lv~Gs~dG~I~I~~~d~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~Dgt 602 (1496)
+.+..+++|+.||.|++| + ..+......+.+|...+.++. ++ +..+++|+.|+.
T Consensus 186 ~~~~~l~~~~~dg~i~i~--d-------------~~~~~~~~~~~~~~~~v~~~~--~~---------~~~l~sg~~dg~ 239 (293)
T d1p22a2 186 YRDRLVVSGSSDNTIRLW--D-------------IECGACLRVLEGHEELVRCIR--FD---------NKRIVSGAYDGK 239 (293)
T ss_dssp EETTEEEEEETTSCEEEE--E-------------TTTCCEEEEECCCSSCEEEEE--CC---------SSEEEEEETTSC
T ss_pred CCCCEEEEECCCCEEEEE--E-------------CCCCEEEEEECCCCEEEEECC--CC---------CEEEEEECCCCE
T ss_conf 898758876589989998--6-------------655614665214310000014--54---------107999867997
Q ss_pred EEEEECCC---------CCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 99997999---------956999802698789999899999999999999996898099998
Q 000450 603 IRIWDLGS---------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 655 (1496)
Q Consensus 603 I~iWDl~t---------g~~l~~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwd 655 (1496)
|++||+.. ..++..+.+|.++|+++.|++ .++++++.|++|++||
T Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~--------~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 240 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--------FQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS--------SCEEECCSSSEEEEEC
T ss_pred EEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEECC--------CEEEEEECCCEEEEEC
T ss_conf 99998888864445677545578458899889999719--------9999992299899959
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.86 E-value=5.8e-19 Score=140.83 Aligned_cols=72 Identities=11% Similarity=0.042 Sum_probs=56.3
Q ss_pred EEEECC-CCCEEEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999938-9997999807885999986678997202248840644344675530333203686322222235666445546
Q 000450 21 ATSALT-QPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSS 99 (1496)
Q Consensus 21 aia~Sp-Dg~~LvTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~~~~s 99 (1496)
+-.||| ||+++|+++ +|.|.+||+.. +. .+. .+|...|.+++ ++
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~---~~--~~~--~~~~~~v~~~~---------------------------~s 51 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSG---TY--VLK--VPEPLRIRYVR---------------------------RG 51 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTS---SB--EEE--CSCCSCEEEEE---------------------------EC
T ss_pred CCCCCCCCCCEEEEEE-CCEEEEEECCC---CC--EEE--CCCCCCEEEEE---------------------------EC
T ss_conf 0514688999999998-99699998999---94--899--16999888899---------------------------98
Q ss_pred CCCCEEEEEECCC--EEEEEECCCCEEEEE
Q ss_conf 9999899983798--199998899817885
Q 000450 100 LDNGALISACTDG--VLCVWSRSSGHCRRR 127 (1496)
Q Consensus 100 ~d~~~LvSas~DG--~I~VWdv~~G~ci~~ 127 (1496)
+|+++|++++.|. .+++||+..|...+.
T Consensus 52 pDg~~l~~~~~~~g~~v~v~d~~~~~~~~~ 81 (360)
T d1k32a3 52 GDTKVAFIHGTREGDFLGIYDYRTGKAEKF 81 (360)
T ss_dssp SSSEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred CCCCEEEEEECCCCCEEEEEECCCCCEEEE
T ss_conf 999999999928998999998999948875
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.86 E-value=6.2e-18 Score=133.84 Aligned_cols=107 Identities=14% Similarity=0.148 Sum_probs=83.0
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEE-------EEECCCCEEEEECCCCCEEEEEC---------CCC
Q ss_conf 77626799834886689999921787765676897999-------99699949999799995699980---------269
Q 000450 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLV-------SGSMDCSIRIWDLGSGNLITVMH---------HHV 621 (1496)
Q Consensus 558 ~s~~~~~~l~gH~~~V~~L~~spd~~~~~~~~~~~~Lv-------SGs~DgtI~iWDl~tg~~l~~l~---------~H~ 621 (1496)
...+....+.+|...+..++|+|+ +..++ +++.|++|++||+.+++...++. .|.
T Consensus 291 ~~~~~~~~l~g~~~~v~~v~~sPd---------g~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~ 361 (426)
T d1hzua2 291 YAWKKVAELQGQGGGSLFIKTHPK---------SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA 361 (426)
T ss_dssp TBTSEEEEEECSSSCCCCEECCTT---------CSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC
T ss_pred CCCEEEEEEECCCCCEEEEECCCC---------CCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCC
T ss_conf 302586898668876367874899---------86188850679880228879999898787670895021102567788
Q ss_pred CCEEEEEECCCCCCCCCCCEE-EEE----ECCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCEEE
Q ss_conf 878999989999999999999-999----6898099998899928899427999828999949999999
Q 000450 622 APVRQIILSPPQTEHPWSDCF-LSV----GEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIA 685 (1496)
Q Consensus 622 ~~V~~i~~sPd~~~~~~~~~l-~Sg----s~DgsV~lwdl~~~~~l~~~~gH~~~V~~V~wspd~~~Lv 685 (1496)
..|.++.|+|| |+.+ +++ +.|+.|++||.++++....+.++. .++|+|+|-+
T Consensus 362 ~rv~~~~fSpD------Gk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~ 418 (426)
T d1hzua2 362 KRVVQPEYNKR------GDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFNV 418 (426)
T ss_dssp CCEEEEEECSS------SSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred CCEEEEEECCC------CCEEEEEEECCCCCCCEEEEEECCCCEEEEEECCCC------CCCCCCEEEE
T ss_conf 51898799999------999999972488889829999999873899987898------4199955757
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.75 E-value=4.5e-12 Score=94.12 Aligned_cols=85 Identities=8% Similarity=-0.028 Sum_probs=61.2
Q ss_pred CCCCCEEEEEEECCCCCEEEEE-----ECCCCEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 9999508999993899979998-----07885999986678997202248840644344675530333203686322222
Q 000450 13 TPPSHRVTATSALTQPPTLYTG-----GSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWK 87 (1496)
Q Consensus 13 ~~p~h~Vtaia~SpDg~~LvTG-----s~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~ 87 (1496)
.....++..++++||++.++.. +.++++.+||..+ .+.+..+.++..+ .++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~t-----g~~~~~~~~~~~~--~~a----------------- 72 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGS-----GSILGHVNGGFLP--NPV----------------- 72 (373)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCC-----CCEEEEEECCCCC--CEE-----------------
T ss_conf 5678986563018999789997342257876599998999-----9799999579886--079-----------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEE----------CCCEEEEEECCCCEEEEEECCC
Q ss_conf 2356664455469999899983----------7981999988998178853199
Q 000450 88 AENSSNVMGKSSLDNGALISAC----------TDGVLCVWSRSSGHCRRRRKLP 131 (1496)
Q Consensus 88 ~~~~~~~~~~~s~d~~~LvSas----------~DG~I~VWdv~~G~ci~~~~l~ 131 (1496)
+++|+.+|+.++ .++.+.+||..+++.+.....+
T Consensus 73 ----------~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~ 116 (373)
T d2madh_ 73 ----------AAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP 116 (373)
T ss_pred ----------ECCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECC
T ss_conf ----------86899989999605775321245318999977789388897268
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.73 E-value=3.6e-14 Score=108.31 Aligned_cols=113 Identities=11% Similarity=-0.053 Sum_probs=86.3
Q ss_pred CCEEEEEECCCCEEEEECCCCCEEE-EECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCC
Q ss_conf 9799999699949999799995699-980269878999989999999999999999689809999889992889942799
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLIT-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP 669 (1496)
Q Consensus 591 ~~~LvSGs~DgtI~iWDl~tg~~l~-~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~~~~l~~~~gH~ 669 (1496)
...+.++..+..+.+||+.++.... .+..+...+..+.++++ +..++... ++.+.+||..+++.+..+. +.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~ 291 (346)
T d1jmxb_ 220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK------DPNQIYGV-LNRLAKYDLKQRKLIKAAN-LD 291 (346)
T ss_dssp ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSS------CTTEEEEE-ESEEEEEETTTTEEEEEEE-CS
T ss_pred CEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEECC------CCEEEEEC-CCEEEEEECCCCCEEEEEC-CC
T ss_conf 3257540478349999777883687876315660688897179------97899942-9838999899993999974-99
Q ss_pred CCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEECCC
Q ss_conf 98289999499999999974899988999889999899990899981778
Q 000450 670 NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1496)
Q Consensus 670 ~~V~~V~wspd~~~Lvtgs~D~s~~~D~dg~I~VWDi~tg~~~~~l~gh~ 719 (1496)
..+.+++|+||++++++++.| +.|+|||+++++.+..+.-..
T Consensus 292 ~~~~~va~s~DG~~l~v~~~d--------~~v~v~D~~t~~~i~~i~~p~ 333 (346)
T d1jmxb_ 292 HTYYCVAFDKKGDKLYLGGTF--------NDLAVFNPDTLEKVKNIKLPG 333 (346)
T ss_dssp SCCCEEEECSSSSCEEEESBS--------SEEEEEETTTTEEEEEEECSS
T ss_pred CCEEEEEECCCCCEEEEEECC--------CCEEEEECCCCCEEEEEECCC
T ss_conf 977899996899999999489--------929999996587979998899
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.72 E-value=9.6e-12 Score=91.93 Aligned_cols=132 Identities=11% Similarity=0.024 Sum_probs=92.2
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEE-CCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCC
Q ss_conf 7626799834886689999921787765676897999996-999499997999956999802698789999899999999
Q 000450 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 559 s~~~~~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs-~DgtI~iWDl~tg~~l~~l~~H~~~V~~i~~sPd~~~~~ 637 (1496)
+......+.. ...+.++.++++ +..++.++ .+..+.+|+.........+..+ ..+..+.+.++
T Consensus 147 ~~~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----- 210 (301)
T d1l0qa2 147 TKAVINTVSV-GRSPKGIAVTPD---------GTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPE----- 210 (301)
T ss_dssp TTEEEEEEEC-CSSEEEEEECTT---------SSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTT-----
T ss_pred CCCEEEECCC-CCCCEEEEEECC---------CCCEEEECCCCCCCCCCCCCCEEEEECCCCC-CCCCEEECCCC-----
T ss_conf 4630353156-788428886046---------5401310121111111111100011101335-77503110111-----
Q ss_pred CCCEEEEEE---CCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCEEEEEE-CCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 999999996---898099998899928899427999828999949999999997-4899988999889999899990899
Q 000450 638 WSDCFLSVG---EDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLC-RDHSRTSDAVDVLFIWDVKTGARER 713 (1496)
Q Consensus 638 ~~~~l~Sgs---~DgsV~lwdl~~~~~l~~~~gH~~~V~~V~wspd~~~Lvtgs-~D~s~~~D~dg~I~VWDi~tg~~~~ 713 (1496)
+..++.++ .++.|.+||+.+++.+..+..+ ..+..++|+||+++|++++ .| ++|++||+++++++.
T Consensus 211 -g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~--------~~i~v~D~~t~~~~~ 280 (301)
T d1l0qa2 211 -GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFC--------NTVSVIDTATNTITA 280 (301)
T ss_dssp -SSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTT--------TEEEEEETTTTEEEE
T ss_pred -CCCCCCCCCCCEEEEEEEEECCCCEEEEEECCC-CCEEEEEEECCCCEEEEEECCC--------CEEEEEECCCCEEEE
T ss_conf -101111002100002323656998199998489-9877999918989999998999--------969999999995999
Q ss_pred EEE
Q ss_conf 981
Q 000450 714 VLR 716 (1496)
Q Consensus 714 ~l~ 716 (1496)
++.
T Consensus 281 ~~~ 283 (301)
T d1l0qa2 281 TMA 283 (301)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 996
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.70 E-value=5.2e-15 Score=114.02 Aligned_cols=85 Identities=6% Similarity=0.026 Sum_probs=52.1
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCC--CEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 9995089999938999799980788--59999866789972022488406443446755303332036863222222356
Q 000450 14 PPSHRVTATSALTQPPTLYTGGSDG--SILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENS 91 (1496)
Q Consensus 14 ~p~h~Vtaia~SpDg~~LvTGs~DG--~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~ 91 (1496)
++..+|++++||||++.|++++.|. .|.+||+.. + ....+.+|...|.+++
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~---~---~~~~~~~~~~~v~~~~--------------------- 92 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT---G---KAEKFEENLGNVFAMG--------------------- 92 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT---C---CEEECCCCCCSEEEEE---------------------
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC---C---CEEEEECCCCEEEEEE---------------------
T ss_conf 699988889998999999999928998999998999---9---4887508971277412---------------------
Q ss_pred CCCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCC
Q ss_conf 6644554699998999837981999988998178853199
Q 000450 92 SNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLP 131 (1496)
Q Consensus 92 ~~~~~~~s~d~~~LvSas~DG~I~VWdv~~G~ci~~~~l~ 131 (1496)
+++|+++|++++.++.+.+|++.++++......+
T Consensus 93 ------~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (360)
T d1k32a3 93 ------VDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR 126 (360)
T ss_dssp ------ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred ------ECCCCCCCCEECCCCCCCCCCCCCCCEEEEEECC
T ss_conf ------1145432100011111000001222100000013
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.68 E-value=9.7e-14 Score=105.44 Aligned_cols=71 Identities=6% Similarity=-0.074 Sum_probs=51.4
Q ss_pred CEEEEEECCCCEEEEECCCCCCCCEEEEEEEEC--CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE-
Q ss_conf 979998078859999866789972022488406--44344675530333203686322222235666445546999989-
Q 000450 29 PTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCG--HSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGAL- 105 (1496)
Q Consensus 29 ~~LvTGs~DG~I~lWdl~~~~~~~~~~~~~L~G--Ht~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~~~~s~d~~~L- 105 (1496)
.+++|++.|++|.+||+.+ . +....+.. +...+.+++ +++|++++
T Consensus 2 ~~~vt~~~d~~v~v~D~~s---~--~~~~~i~~~~~~~~~~~i~---------------------------~spDg~~l~ 49 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEK---M--AVDKVITIADAGPTPMVPM---------------------------VAPGGRIAY 49 (337)
T ss_dssp EEEEEEETTTEEEEEETTT---T--EEEEEEECTTCTTCCCCEE---------------------------ECTTSSEEE
T ss_pred EEEEEECCCCEEEEEECCC---C--EEEEEEECCCCCCCCCEEE---------------------------ECCCCCEEE
T ss_conf 6999976799899999999---9--4999998778899823799---------------------------999989999
Q ss_pred EEEECCCEEEEEECCCCEEEEEECCC
Q ss_conf 99837981999988998178853199
Q 000450 106 ISACTDGVLCVWSRSSGHCRRRRKLP 131 (1496)
Q Consensus 106 vSas~DG~I~VWdv~~G~ci~~~~l~ 131 (1496)
++++.|+.|.+||+.+|+++.....+
T Consensus 50 v~~~~~~~v~v~D~~t~~~~~~~~~~ 75 (337)
T d1pbyb_ 50 ATVNKSESLVKIDLVTGETLGRIDLS 75 (337)
T ss_dssp EEETTTTEEEEEETTTCCEEEEEECC
T ss_pred EEECCCCEEEEEECCCCCEEEEEECC
T ss_conf 99789994999999999298887247
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.64 E-value=1.2e-11 Score=91.25 Aligned_cols=103 Identities=12% Similarity=-0.003 Sum_probs=80.2
Q ss_pred ECCCCEEEEECCCCCEEE-EECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEEE
Q ss_conf 699949999799995699-9802698789999899999999999999996898099998899928899427999828999
Q 000450 598 SMDCSIRIWDLGSGNLIT-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVV 676 (1496)
Q Consensus 598 s~DgtI~iWDl~tg~~l~-~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~~~~l~~~~gH~~~V~~V~ 676 (1496)
..+..+.+||..++.... .+..+...+..+.++|+ +..++.. |+.+++||+++++.+..+. +...+.+++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~ 286 (337)
T d1pbyb_ 216 AYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPA------KTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVN 286 (337)
T ss_dssp GEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTT------SSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEE
T ss_pred CCCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCC------CEEEEEC--CCCEEEEECCCCCEEEEEC-CCCCEEEEE
T ss_conf 367617999868885888983288750588874266------1399973--5528999898896999974-899889999
Q ss_pred ECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEEC
Q ss_conf 94999999999748999889998899998999908999817
Q 000450 677 WDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 677 wspd~~~Lvtgs~D~s~~~D~dg~I~VWDi~tg~~~~~l~g 717 (1496)
|+||+++|++++.| +.|+|||.++++.+..+.-
T Consensus 287 ~s~dG~~l~v~~~~--------~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 287 VSTDGSTVWLGGAL--------GDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp ECTTSCEEEEESBS--------SEEEEEETTTCCEEEEEEC
T ss_pred ECCCCCEEEEEECC--------CCEEEEECCCCCEEEEEEC
T ss_conf 97899999999499--------9299999998769899988
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.63 E-value=1.7e-10 Score=83.55 Aligned_cols=90 Identities=9% Similarity=0.034 Sum_probs=64.4
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEE---CCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCC
Q ss_conf 26799834886689999921787765676897999996---999499997999956999802698789999899999999
Q 000450 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS---MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1496)
Q Consensus 561 ~~~~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs---~DgtI~iWDl~tg~~l~~l~~H~~~V~~i~~sPd~~~~~ 637 (1496)
.....+.. ...+..+.++++ +..++.+. .+++|.+||+.+++....+..+ ..+..++|+|+
T Consensus 191 ~~~~~~~~-~~~~~~~~~~~~---------g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spd----- 254 (301)
T d1l0qa2 191 SVIDTVKV-EAAPSGIAVNPE---------GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPD----- 254 (301)
T ss_dssp EEEEEEEC-SSEEEEEEECTT---------SSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTT-----
T ss_pred EEEECCCC-CCCCCEEECCCC---------CCCCCCCCCCCEEEEEEEEECCCCEEEEEECCC-CCEEEEEEECC-----
T ss_conf 01110133-577503110111---------101111002100002323656998199998489-98779999189-----
Q ss_pred CCCE-EEEEECCCCEEEEECCCCCEEEEECC
Q ss_conf 9999-99996898099998899928899427
Q 000450 638 WSDC-FLSVGEDFSVALASLETLRVERMFPG 667 (1496)
Q Consensus 638 ~~~~-l~Sgs~DgsV~lwdl~~~~~l~~~~g 667 (1496)
++. +++++.|++|++||+++++++.+++.
T Consensus 255 -g~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 255 -GKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp -SSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred -CCEEEEEECCCCEEEEEECCCCEEEEEEEC
T ss_conf -899999989999699999999959999968
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.55 E-value=2.3e-12 Score=96.09 Aligned_cols=188 Identities=11% Similarity=-0.081 Sum_probs=110.8
Q ss_pred ECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 93899979998078859999866789972022488406443446755303332036863222222356664455469999
Q 000450 24 ALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNG 103 (1496)
Q Consensus 24 ~SpDg~~LvTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~~~~s~d~~ 103 (1496)
..++.-++++.+.||+|.+||..+ .+.+..+..|. .+..++ +++|++
T Consensus 28 ~~~~~~~~v~~~d~g~v~v~D~~t-----~~v~~~~~~g~-~~~~v~---------------------------fSpDG~ 74 (432)
T d1qksa2 28 WDLENLFSVTLRDAGQIALIDGST-----YEIKTVLDTGY-AVHISR---------------------------LSASGR 74 (432)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTT-----CCEEEEEECSS-CEEEEE---------------------------ECTTSC
T ss_pred CCCCCEEEEEECCCCEEEEEECCC-----CCEEEEEECCC-CEEEEE---------------------------ECCCCC
T ss_conf 787828999976999799998999-----83999973799-713799---------------------------889999
Q ss_pred EEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCEEE---ECCCCCEEE-EECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89998379819999889981788531999878894799---748999599-99030023587666531222246643445
Q 000450 104 ALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVIC---TLPSNPRYV-CIGCCFIDTNQLSDHHSFESVEGDLVSED 179 (1496)
Q Consensus 104 ~LvSas~DG~I~VWdv~~G~ci~~~~l~~~~g~~~~i~---~~~~~~~ll-~~g~~~id~~~l~~~~~~~si~~~~~~~d 179 (1496)
++++++.||.+.+||+.+++.......+.. ..|..+. .++++++++ ..+..
T Consensus 75 ~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~-~~~~~~~~s~~~SpDG~~l~vs~~~------------------------ 129 (432)
T d1qksa2 75 YLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYW------------------------ 129 (432)
T ss_dssp EEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEE------------------------
T ss_pred EEEEECCCCCEEEEEEECCCCEEEEEEECC-CCCCCEEEECCCCCCCCEEEEECCC------------------------
T ss_conf 999982899978998108981288998448-8987769843218888889998178------------------------
Q ss_pred CCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCC--------CCEEEEEEEECCCCCCCEEEEEE-ECCCCEEEEECCCC
Q ss_conf 6788899996279999787507999985176435--------87279999530578871159999-18882999997889
Q 000450 180 KEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSI--------GPWKFMDVVSLGEDMGKHYGLMV-DSVGRLQLVPISKE 250 (1496)
Q Consensus 180 ~~~~~~~~~~~~i~i~d~~t~~il~~l~s~~~s~--------~~i~~~~v~~~~~d~~~~~~lia-s~dG~i~vW~l~~~ 250 (1496)
.+.+.+||..+.+++..+......+ +...++.++ +++. .++++ ..++.+.+|+....
T Consensus 130 ---------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s---~dg~--~~~vs~~~~~~i~~~d~~~~ 195 (432)
T d1qksa2 130 ---------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS---HYRP--EFIVNVKETGKILLVDYTDL 195 (432)
T ss_dssp ---------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC---SSSS--EEEEEETTTTEEEEEETTCS
T ss_pred ---------CCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEEC---CCCC--EEEEEECCCCEEEEEECCCC
T ss_conf ---------982799907655422540247764352201688850589987---8999--89999816882999984378
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCE
Q ss_conf 86532247875457884100100267545731999902996999991983
Q 000450 251 SHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDH 300 (1496)
Q Consensus 251 ~~~~~~~~~~l~~~ek~i~~~~~~~~~~~~~~~vs~s~~g~~i~~v~~~~ 300 (1496)
+.. .+ .... .......++++|+|+.+++...+.
T Consensus 196 ~~~-------------~~---~~i~-~g~~~~~~~~spdg~~~~va~~~~ 228 (432)
T d1qksa2 196 NNL-------------KT---TEIS-AERFLHDGGLDGSHRYFITAANAR 228 (432)
T ss_dssp SEE-------------EE---EEEE-CCSSEEEEEECTTSCEEEEEEGGG
T ss_pred CCC-------------EE---EEEC-CCCCCCCCEECCCCCEEEEECCCC
T ss_conf 752-------------27---9983-367542653889887999951666
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.49 E-value=6.7e-12 Score=93.00 Aligned_cols=81 Identities=11% Similarity=0.049 Sum_probs=52.9
Q ss_pred CEEEEEEECCCCCEEEEE-----ECCCCEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 508999993899979998-----078859999866789972022488406443446755303332036863222222356
Q 000450 17 HRVTATSALTQPPTLYTG-----GSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENS 91 (1496)
Q Consensus 17 h~Vtaia~SpDg~~LvTG-----s~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~ 91 (1496)
++++..+.+||++.++.. ..+++|.+||..+ .+++..+.++..+ .++
T Consensus 2 ~p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~t-----g~~~~~~~~g~~~--~~a--------------------- 53 (355)
T d2bbkh_ 2 EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEA-----GRVIGMIDGGFLP--NPV--------------------- 53 (355)
T ss_dssp CCCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTT-----TEEEEEEEECSSC--EEE---------------------
T ss_pred CCCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCC-----CCEEEEEECCCCC--CEE---------------------
T ss_conf 971747658999999998266477767199999999-----9499999899998--569---------------------
Q ss_pred CCCCCCCCCCCCEEEEE----------ECCCEEEEEECCCCEEEEEECCC
Q ss_conf 66445546999989998----------37981999988998178853199
Q 000450 92 SNVMGKSSLDNGALISA----------CTDGVLCVWSRSSGHCRRRRKLP 131 (1496)
Q Consensus 92 ~~~~~~~s~d~~~LvSa----------s~DG~I~VWdv~~G~ci~~~~l~ 131 (1496)
+++|+++|+.+ +.||.|++||..+++.+.....+
T Consensus 54 ------~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~ 97 (355)
T d2bbkh_ 54 ------VADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELP 97 (355)
T ss_dssp ------ECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET
T ss_pred ------ECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECC
T ss_conf ------94899999999677764201589998999999999798898058
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=3e-08 Score=68.30 Aligned_cols=64 Identities=8% Similarity=0.114 Sum_probs=45.4
Q ss_pred EEEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-EE
Q ss_conf 79998078859999866789972022488406443446755303332036863222222356664455469999899-98
Q 000450 30 TLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALI-SA 108 (1496)
Q Consensus 30 ~LvTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~~~~~s~d~~~Lv-Sa 108 (1496)
.++++++|++|.+|++.. ++..+.+. ...|.+.|..|+ +++|+++|+ ++
T Consensus 6 v~v~~~~~~~I~v~~~~~--~~~l~~~~-~~~~~~~v~~la---------------------------~spDG~~L~v~~ 55 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNH--EGALTLTQ-VVDVPGQVQPMV---------------------------VSPDKRYLYVGV 55 (333)
T ss_dssp EEEEEGGGTEEEEEEECT--TSCEEEEE-EEECSSCCCCEE---------------------------ECTTSSEEEEEE
T ss_pred EEEECCCCCCEEEEEECC--CCCEEEEE-EECCCCCEEEEE---------------------------EECCCCEEEEEE
T ss_conf 999878999389999839--99769999-975799886899---------------------------958979999997
Q ss_pred ECCCEEEEEECCCCE
Q ss_conf 379819999889981
Q 000450 109 CTDGVLCVWSRSSGH 123 (1496)
Q Consensus 109 s~DG~I~VWdv~~G~ 123 (1496)
..|+.+.+|++..+.
T Consensus 56 ~~d~~i~~~~i~~~~ 70 (333)
T d1ri6a_ 56 RPEFRVLAYRIAPDD 70 (333)
T ss_dssp TTTTEEEEEEECTTT
T ss_pred CCCCEEEEEEEECCC
T ss_conf 789969999996898
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.27 E-value=5.9e-08 Score=66.25 Aligned_cols=63 Identities=16% Similarity=0.068 Sum_probs=39.5
Q ss_pred CCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCE-E-EEEECCCCCCCCCCCEEEEEECCCCEEEEEEECCCC
Q ss_conf 80999988999288994279998289999499999-9-999748999889998899998999908999817788
Q 000450 649 FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGY-I-ACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 720 (1496)
Q Consensus 649 gsV~lwdl~~~~~l~~~~gH~~~V~~V~wspd~~~-L-vtgs~D~s~~~D~dg~I~VWDi~tg~~~~~l~gh~a 720 (1496)
..|.+||..+++.+..+.. ...+.++.|+||++. + +++..| +.|+|||+++|+.++.+.++..
T Consensus 280 ~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d--------~~i~v~D~~tg~~~~~i~~~G~ 344 (355)
T d2bbkh_ 280 RFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGD--------KTLYIHDAESGEELRSVNQLGH 344 (355)
T ss_dssp EEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTT--------TEEEEEETTTCCEEEEECCCCS
T ss_pred CEEEEEECCCCCEEEEECC-CCCEEEEEECCCCCEEEEEEECCC--------CEEEEEECCCCCEEEEEECCCC
T ss_conf 7599986788849899668-998779999289996999997899--------9899999999989999928697
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.26 E-value=1.6e-09 Score=76.96 Aligned_cols=91 Identities=14% Similarity=0.035 Sum_probs=72.6
Q ss_pred EEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCEE
Q ss_conf 79983488668999992178776567689799999699949999799995699980269878999989999999999999
Q 000450 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642 (1496)
Q Consensus 563 ~~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~~i~~sPd~~~~~~~~~l 642 (1496)
...+..|...+..+.++++ +..++.+. ++.|.+||..+++.+..+. +...+.+++|+|| ++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~D------G~~l 306 (346)
T d1jmxb_ 244 TQEFADLTELYFTGLRSPK---------DPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKK------GDKL 306 (346)
T ss_dssp EEEEEECSSCEEEEEECSS---------CTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSS------SSCE
T ss_pred EEEEECCCCEEEEEEEECC---------CCEEEEEC-CCEEEEEECCCCCEEEEEC-CCCCEEEEEECCC------CCEE
T ss_conf 7876315660688897179---------97899942-9838999899993999974-9997789999689------9999
Q ss_pred EEEECCCCEEEEECCCCCEEEEECCCCC
Q ss_conf 9996898099998899928899427999
Q 000450 643 LSVGEDFSVALASLETLRVERMFPGHPN 670 (1496)
Q Consensus 643 ~Sgs~DgsV~lwdl~~~~~l~~~~gH~~ 670 (1496)
++++.|+.|++||.++++.+.++....+
T Consensus 307 ~v~~~d~~v~v~D~~t~~~i~~i~~p~g 334 (346)
T d1jmxb_ 307 YLGGTFNDLAVFNPDTLEKVKNIKLPGG 334 (346)
T ss_dssp EEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred EEEECCCCEEEEECCCCCEEEEEECCCC
T ss_conf 9994899299999965879799988999
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.16 E-value=1.9e-07 Score=62.77 Aligned_cols=78 Identities=12% Similarity=0.002 Sum_probs=51.2
Q ss_pred CCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCEE--EEEECCCCCCCCCCCEEEEEECCCCEEEEEEE
Q ss_conf 9999999689809999889992889942799982899994999999--99974899988999889999899990899981
Q 000450 639 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYI--ACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1496)
Q Consensus 639 ~~~l~Sgs~DgsV~lwdl~~~~~l~~~~gH~~~V~~V~wspd~~~L--vtgs~D~s~~~D~dg~I~VWDi~tg~~~~~l~ 716 (1496)
+..++....++.+.+||..+++.+..+. +...+..+.|+||++.+ ++++.| ++|+|||+.+|+.++++.
T Consensus 288 ~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d--------~~v~v~D~~tg~~~~~~~ 358 (373)
T d2madh_ 288 QSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGT--------EVLHIYDAGAGDQDQSTV 358 (373)
T ss_pred CCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEEEECCC--------CEEEEEECCCCCEEEEEC
T ss_conf 8247862589869999899996989866-8998258999989998999996799--------929999999998999988
Q ss_pred CCCCCCEEE
Q ss_conf 778871112
Q 000450 717 GTASHSMFD 725 (1496)
Q Consensus 717 gh~a~~i~~ 725 (1496)
++.......
T Consensus 359 ~~g~~P~~l 367 (373)
T d2madh_ 359 ELGSGPQVL 367 (373)
T ss_pred CCCCCCCEE
T ss_conf 889898189
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=2.4e-08 Score=68.86 Aligned_cols=80 Identities=10% Similarity=0.061 Sum_probs=48.7
Q ss_pred CCEEEEEECCCCCCCCCCC-EEEEEECCCCEEEEECCCCCEEEE---ECCCCCCCEEEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 8789999899999999999-999996898099998899928899---427999828999949999999997489998899
Q 000450 622 APVRQIILSPPQTEHPWSD-CFLSVGEDFSVALASLETLRVERM---FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDA 697 (1496)
Q Consensus 622 ~~V~~i~~sPd~~~~~~~~-~l~Sgs~DgsV~lwdl~~~~~l~~---~~gH~~~V~~V~wspd~~~Lvtgs~D~s~~~D~ 697 (1496)
.....+.++++ ++ .++....++.+.+|++........ .......+..++|+|||++|++++.+
T Consensus 230 ~~~~~~~~s~d------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~------- 296 (333)
T d1ri6a_ 230 RWAADIHITPD------GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK------- 296 (333)
T ss_dssp CCEEEEEECTT------SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT-------
T ss_pred CCCEEEEEECC------CCCEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECC-------
T ss_conf 53126899515------67205504568827878873999789999996789976289990798999999889-------
Q ss_pred CCEEEEE--ECCCCEEEEE
Q ss_conf 9889999--8999908999
Q 000450 698 VDVLFIW--DVKTGARERV 714 (1496)
Q Consensus 698 dg~I~VW--Di~tg~~~~~ 714 (1496)
++.|.+| |.++|.+...
T Consensus 297 ~~~v~v~~id~~tG~l~~~ 315 (333)
T d1ri6a_ 297 SHHISVYEIVGEQGLLHEK 315 (333)
T ss_dssp TCEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEEEECCCCCEEEE
T ss_conf 9939999997999968999
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.83 E-value=5e-07 Score=59.96 Aligned_cols=83 Identities=8% Similarity=-0.052 Sum_probs=42.2
Q ss_pred CEEEEEEECCCCCEEE---EEECCCCEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5089999938999799---9807885999986678997202248840644344675530333203686322222235666
Q 000450 17 HRVTATSALTQPPTLY---TGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1496)
Q Consensus 17 h~Vtaia~SpDg~~Lv---TGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~ 93 (1496)
.+...++..+|++..+ +...+|...+|-++. ...+.+.++.++..+. ++
T Consensus 20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~---~~~~~~~~~~~~~~~~--~a----------------------- 71 (368)
T d1mdah_ 20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCA---GCGVTLGHSLGAFLSL--AV----------------------- 71 (368)
T ss_dssp CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEET---TTTEEEEEEEECTTCE--EE-----------------------
T ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEC---CCCCEEEEEECCCCCC--CE-----------------------
T ss_conf 9866645589876126972045788621799708---9983778885787775--13-----------------------
Q ss_pred CCCCCCCCCCEEEEEE----------CCCEEEEEECCCCEEEEEECCC
Q ss_conf 4455469999899983----------7981999988998178853199
Q 000450 94 VMGKSSLDNGALISAC----------TDGVLCVWSRSSGHCRRRRKLP 131 (1496)
Q Consensus 94 ~~~~~s~d~~~LvSas----------~DG~I~VWdv~~G~ci~~~~l~ 131 (1496)
+++|+.+++.++ .|++|.+||..+++.+....+|
T Consensus 72 ----~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p 115 (368)
T d1mdah_ 72 ----AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP 115 (368)
T ss_dssp ----ECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET
T ss_pred ----ECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCC
T ss_conf ----98999889997556764010356786999989999383064378
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.77 E-value=5.7e-06 Score=52.83 Aligned_cols=116 Identities=10% Similarity=0.016 Sum_probs=66.2
Q ss_pred CCEEEEEECCCCEEEE--ECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECC-CC-----EEEEECCCCCEE
Q ss_conf 9799999699949999--799995699980269878999989999999999999999689-80-----999988999288
Q 000450 591 NEVLVSGSMDCSIRIW--DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED-FS-----VALASLETLRVE 662 (1496)
Q Consensus 591 ~~~LvSGs~DgtI~iW--Dl~tg~~l~~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~D-gs-----V~lwdl~~~~~l 662 (1496)
+..+.....|+...+| +...+. ...+..+...|..+. .++. ...++++..+ .+ +.-.++..+...
T Consensus 332 ~~~~~~s~~dg~~~ly~~~~~g~~-~~~lt~g~~~v~~~~-~~d~-----~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~ 404 (470)
T d2bgra1 332 SFYKIISNEEGYRHICYFQIDKKD-CTFITKGTWEVIGIE-ALTS-----DYLYYISNEYKGMPGGRNLYKIQLSDYTKV 404 (470)
T ss_dssp EEEEEEECTTSCEEEEEEETTCSC-CEESCCSSSCEEEEE-EECS-----SEEEEEESCGGGCTTCBEEEEEETTCTTCE
T ss_pred CCEEEEECCCCCCEEEEEECCCCC-EEEECCCCEEEEEEE-EECC-----CEEEEEEECCCCCCCEEEEEEEECCCCCCE
T ss_conf 847987436757645999526873-045116980487878-9779-----999999956899835179999988899860
Q ss_pred EE----ECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEECC
Q ss_conf 99----427999828999949999999997489998899988999989999089998177
Q 000450 663 RM----FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1496)
Q Consensus 663 ~~----~~gH~~~V~~V~wspd~~~Lvtgs~D~s~~~D~dg~I~VWDi~tg~~~~~l~gh 718 (1496)
.. +.+|...+..+.||||++|++..+.. .. +-.+.+|+..+|+.++.++..
T Consensus 405 ~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~---~~--~P~~~l~~~~~g~~v~~le~n 459 (470)
T d2bgra1 405 TCLSCELNPERCQYYSVSFSKEAKYYQLRCSG---PG--LPLYTLHSSVNDKGLRVLEDN 459 (470)
T ss_dssp EESSTTTSTTTBCBEEEEECTTSSEEEEEECS---BS--SCEEEEEETTTTEEEEEEECC
T ss_pred EEECCCCCCCCCCEEEEEECCCCCEEEEEECC---CC--CCEEEEEECCCCCEEEEEECC
T ss_conf 57035435888987999999899999998328---99--981999998999899998063
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.61 E-value=6.9e-06 Score=52.26 Aligned_cols=114 Identities=10% Similarity=0.097 Sum_probs=72.2
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCCCCCCCCC-EEEEEECCCCEEEEECCCCC-----------EEEEECCCCCCEEEEE
Q ss_conf 26799834886689999921787765676897-99999699949999799995-----------6999802698789999
Q 000450 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLGSGN-----------LITVMHHHVAPVRQII 628 (1496)
Q Consensus 561 ~~~~~l~gH~~~V~~L~~spd~~~~~~~~~~~-~LvSGs~DgtI~iWDl~tg~-----------~l~~l~~H~~~V~~i~ 628 (1496)
.....+..... ...+.++|| ++ .++++..|++|.+||+.+.. .+.-...-.-......
T Consensus 249 ~v~~~IPvgks-PhGv~vSPD---------Gkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~ 318 (441)
T d1qnia2 249 EFTRYIPVPKN-PHGLNTSPD---------GKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTT 318 (441)
T ss_dssp SSEEEECCBSS-CCCEEECTT---------SCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEE
T ss_pred CEEEEEECCCC-CCCCEECCC---------CCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCE
T ss_conf 06899717988-667268999---------87899907759938999832244575256884247996014554766522
Q ss_pred ECCCCCCCCCCCEEEEEECCCCEEEEECCC----------CCEEEEE-----CCCCCCCEEEEECCCCCEEEEEECC
Q ss_conf 899999999999999996898099998899----------9288994-----2799982899994999999999748
Q 000450 629 LSPPQTEHPWSDCFLSVGEDFSVALASLET----------LRVERMF-----PGHPNYPAKVVWDCPRGYIACLCRD 690 (1496)
Q Consensus 629 ~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~----------~~~l~~~-----~gH~~~V~~V~wspd~~~Lvtgs~D 690 (1496)
|.++ +..+.+...|..|..|++.. ...+..+ +||...+....++|||+||++++.-
T Consensus 319 fd~~------g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~ 389 (441)
T d1qnia2 319 FDGR------GNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKF 389 (441)
T ss_dssp ECSS------SEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESC
T ss_pred ECCC------CEEEECCCCCCEEEEECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 6578------5599852443168972354221332267776568645326689877524542238988489965744
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.58 E-value=1.1e-06 Score=57.59 Aligned_cols=112 Identities=10% Similarity=0.012 Sum_probs=64.6
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCC----
Q ss_conf 9999996992999980454347999884335776267998348866899999217877656768979999969994----
Q 000450 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS---- 602 (1496)
Q Consensus 527 ~lv~Gs~dG~I~I~~~d~l~~~d~~~~~~d~~s~~~~~~l~gH~~~V~~L~~spd~~~~~~~~~~~~LvSGs~Dgt---- 602 (1496)
.+.....+|...++.++. .... ...+..+...|..+. ..+ .+...+++..++.
T Consensus 334 ~~~~s~~dg~~~ly~~~~-------------~g~~-~~~lt~g~~~v~~~~-~~d--------~~~iyf~a~~~~~~p~~ 390 (470)
T d2bgra1 334 YKIISNEEGYRHICYFQI-------------DKKD-CTFITKGTWEVIGIE-ALT--------SDYLYYISNEYKGMPGG 390 (470)
T ss_dssp EEEEECTTSCEEEEEEET-------------TCSC-CEESCCSSSCEEEEE-EEC--------SSEEEEEESCGGGCTTC
T ss_pred EEEEECCCCCCEEEEEEC-------------CCCC-EEEECCCCEEEEEEE-EEC--------CCEEEEEEECCCCCCCE
T ss_conf 798743675764599952-------------6873-045116980487878-977--------99999999568998351
Q ss_pred EEEE--ECCCCCEEEEE----CCCCCCEEEEEECCCCCCCCCCCEEE---EEECCCCEEEEECCCCCEEEEECC
Q ss_conf 9999--79999569998----02698789999899999999999999---996898099998899928899427
Q 000450 603 IRIW--DLGSGNLITVM----HHHVAPVRQIILSPPQTEHPWSDCFL---SVGEDFSVALASLETLRVERMFPG 667 (1496)
Q Consensus 603 I~iW--Dl~tg~~l~~l----~~H~~~V~~i~~sPd~~~~~~~~~l~---Sgs~DgsV~lwdl~~~~~l~~~~g 667 (1496)
-.+| ++..+.....+ ..|...+..+.|+|+ +++++ ++..+..+.+|+..+++.++.+..
T Consensus 391 ~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpd------gky~~~~~s~~~~P~~~l~~~~~g~~v~~le~ 458 (470)
T d2bgra1 391 RNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKE------AKYYQLRCSGPGLPLYTLHSSVNDKGLRVLED 458 (470)
T ss_dssp BEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTT------SSEEEEEECSBSSCEEEEEETTTTEEEEEEEC
T ss_pred EEEEEEECCCCCCEEEECCCCCCCCCCEEEEEECCC------CCEEEEEECCCCCCEEEEEECCCCCEEEEEEC
T ss_conf 799999888998605703543588898799999989------99999983289998199999899989999806
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.44 E-value=7e-06 Score=52.20 Aligned_cols=111 Identities=7% Similarity=-0.046 Sum_probs=54.3
Q ss_pred EEECCCE--EEEEECCCCEEEEEECCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9837981--99998899817885319998788947997489995999903002358766653122224664344567888
Q 000450 107 SACTDGV--LCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDKEVPM 184 (1496)
Q Consensus 107 Sas~DG~--I~VWdv~~G~ci~~~~l~~~~g~~~~i~~~~~~~~ll~~g~~~id~~~l~~~~~~~si~~~~~~~d~~~~~ 184 (1496)
++..+|+ +.+||..+++.+...... ..+ ...++++++.+++...+.. ...
T Consensus 39 ~~~~~g~~~~~~~d~~~~~~~~~~~~~---~~~--~~a~spDg~~i~~~~~~~~-----------------------~~~ 90 (368)
T d1mdah_ 39 PAYFAGTTENWVSCAGCGVTLGHSLGA---FLS--LAVAGHSGSDFALASTSFA-----------------------RSA 90 (368)
T ss_dssp CTTTCSSEEEEEEETTTTEEEEEEEEC---TTC--EEEECTTSSCEEEEEEEET-----------------------TTT
T ss_pred ECCCCCCCEEEEEECCCCCEEEEEECC---CCC--CCEECCCCCEEEEECCCCC-----------------------CCC
T ss_conf 045788621799708998377888578---777--5139899988999755676-----------------------401
Q ss_pred CCCCCCEEEEEECCCEEEEEEEECCC---CCC-CCEEEEEEEECCCCCCCEEEEEE-ECCCCEEEEECCCC
Q ss_conf 99996279999787507999985176---435-87279999530578871159999-18882999997889
Q 000450 185 KNPPKCTLVIVDTYGLTIVQTVFHGN---LSI-GPWKFMDVVSLGEDMGKHYGLMV-DSVGRLQLVPISKE 250 (1496)
Q Consensus 185 ~~~~~~~i~i~d~~t~~il~~l~s~~---~s~-~~i~~~~v~~~~~d~~~~~~lia-s~dG~i~vW~l~~~ 250 (1496)
.......|.+||+.+++.+..+.-.. ... ..-..+.|+ +|++. ++++ ..++.+.+|++...
T Consensus 91 ~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~S---pDGk~--l~va~~~~~~v~~~d~~~~ 156 (368)
T d1mdah_ 91 KGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC---ASSAC--LLFFLFGSSAAAGLSVPGA 156 (368)
T ss_dssp SSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC---TTSSC--EEEEECSSSCEEEEEETTT
T ss_pred CCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEEC---CCCCE--EEEEECCCCEEEEEECCCC
T ss_conf 035678699998999938306437854210246886405887---89989--9999689985999989989
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.89 E-value=0.00056 Score=39.32 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=64.3
Q ss_pred CCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCC-EEEEEECCCCEEEEECCCCC---------
Q ss_conf 97999996999499997999956999802698789999899999999999-99999689809999889992---------
Q 000450 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD-CFLSVGEDFSVALASLETLR--------- 660 (1496)
Q Consensus 591 ~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~~i~~sPd~~~~~~~~-~l~Sgs~DgsV~lwdl~~~~--------- 660 (1496)
++++..+ .++.+.+++......+..+.....| ..+.++|| ++ .++++..|.+|.+||+++.+
T Consensus 229 Gk~~~v~-~~~v~vvd~~~~~~v~~~IPvgksP-hGv~vSPD------Gkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~ 300 (441)
T d1qnia2 229 GNFKTIG-DSKVPVVDGRGESEFTRYIPVPKNP-HGLNTSPD------GKYFIANGKLSPTVSVIAIDKLDDLFEDKIEL 300 (441)
T ss_dssp TCCBCCT-TCCCCEEECSSSCSSEEEECCBSSC-CCEEECTT------SCEEEEECTTSSBEEEEEGGGHHHHTTTSSCG
T ss_pred CCEEEEC-CCCCEEEECCCCCCEEEEEECCCCC-CCCEECCC------CCEEEEECCCCCCEEEEEEEHHHHHHHCCCCC
T ss_conf 9999969-9982899803687068997179886-67268999------87899907759938999832244575256884
Q ss_pred --EEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf --88994279998289999499999999974899988999889999899
Q 000450 661 --VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1496)
Q Consensus 661 --~l~~~~gH~~~V~~V~wspd~~~Lvtgs~D~s~~~D~dg~I~VWDi~ 707 (1496)
++.-.....-.+....|.+++....+...| ..|..|++.
T Consensus 301 ~~~~~~~~~~glgplh~~fd~~g~~yts~~~d--------s~v~kw~~~ 341 (441)
T d1qnia2 301 RDTIVAEPELGLGPLHTTFDGRGNAYTTLFID--------SQVCKWNIA 341 (441)
T ss_dssp GGGEEECCBCCSCEEEEEECSSSEEEEEETTT--------TEEEEEEHH
T ss_pred CEEEEEECCCCCCCCCCEECCCCEEEECCCCC--------CEEEEECCC
T ss_conf 24799601455476652265785599852443--------168972354
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=96.78 E-value=0.01 Score=30.77 Aligned_cols=120 Identities=13% Similarity=0.011 Sum_probs=73.9
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCE-EEEEECCCCEEEEECCCCCEEEEECC-------------------CCCCEEEEEE
Q ss_conf 866899999217877656768979-99996999499997999956999802-------------------6987899998
Q 000450 570 TGAVLCLAAHRMVGTAKGWSFNEV-LVSGSMDCSIRIWDLGSGNLITVMHH-------------------HVAPVRQIIL 629 (1496)
Q Consensus 570 ~~~V~~L~~spd~~~~~~~~~~~~-LvSGs~DgtI~iWDl~tg~~l~~l~~-------------------H~~~V~~i~~ 629 (1496)
......+.|+|+ +++ .++.-.+++|.+|++........... +......+.+
T Consensus 192 g~gPr~i~f~pd---------g~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 262 (365)
T d1jofa_ 192 GDHPRWVAMHPT---------GNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCAL 262 (365)
T ss_dssp TCCEEEEEECTT---------SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEE
T ss_pred CCCEEEEEECCC---------CCEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 874089998899---------86699951589989999955987537787312402455655666544443577631699
Q ss_pred CCCCCCCCCCCEEEEE-ECCC-----CEEEEECCCC-CEE-----EEECCCCCCCEEEEECC-CCCEEEEEECCCCCCCC
Q ss_conf 9999999999999999-6898-----0999988999-288-----99427999828999949-99999999748999889
Q 000450 630 SPPQTEHPWSDCFLSV-GEDF-----SVALASLETL-RVE-----RMFPGHPNYPAKVVWDC-PRGYIACLCRDHSRTSD 696 (1496)
Q Consensus 630 sPd~~~~~~~~~l~Sg-s~Dg-----sV~lwdl~~~-~~l-----~~~~gH~~~V~~V~wsp-d~~~Lvtgs~D~s~~~D 696 (1496)
+|+ ++.+... ..+. .+..|++... ... .........+..+.++| ++++|+++..+
T Consensus 263 spd------G~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~------ 330 (365)
T d1jofa_ 263 TFS------GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ------ 330 (365)
T ss_dssp CTT------SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS------
T ss_pred CCC------CCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCCCCEEEEEECC------
T ss_conf 899------99789971357875422799998568871446767667776799864789648999999999679------
Q ss_pred CCCEEEEEECCCCEE
Q ss_conf 998899998999908
Q 000450 697 AVDVLFIWDVKTGAR 711 (1496)
Q Consensus 697 ~dg~I~VWDi~tg~~ 711 (1496)
++.|.+|++....+
T Consensus 331 -s~~v~v~~~~~~~l 344 (365)
T d1jofa_ 331 -EGWLEIYRWKDEFL 344 (365)
T ss_dssp -SCEEEEEEEETTEE
T ss_pred -CCEEEEEEEECCCC
T ss_conf -99499999828867
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=96.43 E-value=0.017 Score=29.23 Aligned_cols=72 Identities=8% Similarity=0.041 Sum_probs=48.2
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99508999993899979998078859999866789972022488406443446755303332036863222222356664
Q 000450 15 PSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNV 94 (1496)
Q Consensus 15 p~h~Vtaia~SpDg~~LvTGs~DG~I~lWdl~~~~~~~~~~~~~L~GHt~~Vt~La~c~~~~~s~dg~~~~~~~~~~~~~ 94 (1496)
..+.+..++++|||+.++|...+++|..|+-. ++.. .+....+.+.+++
T Consensus 26 ~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~----g~~~---~~~~~~~~~~gla------------------------ 74 (302)
T d2p4oa1 26 VNTFLENLASAPDGTIFVTNHEVGEIVSITPD----GNQQ---IHATVEGKVSGLA------------------------ 74 (302)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT----CCEE---EEEECSSEEEEEE------------------------
T ss_pred CCCCCCCEEECCCCCEEEEECCCCEEEEEECC----CCEE---EEECCCCCCCEEE------------------------
T ss_conf 99884787799998899996889989999089----9889---9971799853689------------------------
Q ss_pred CCCCCCCCCEEEEEECCCEEEEEECC
Q ss_conf 45546999989998379819999889
Q 000450 95 MGKSSLDNGALISACTDGVLCVWSRS 120 (1496)
Q Consensus 95 ~~~~s~d~~~LvSas~DG~I~VWdv~ 120 (1496)
+.+|+.++++...++.+.+|+..
T Consensus 75 ---~~~dG~l~v~~~~~~~~~~~~~~ 97 (302)
T d2p4oa1 75 ---FTSNGDLVATGWNADSIPVVSLV 97 (302)
T ss_dssp ---ECTTSCEEEEEECTTSCEEEEEE
T ss_pred ---ECCCCCEEEEECCCCEEEEEEEC
T ss_conf ---86778869983289537888710
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=96.40 E-value=0.018 Score=29.09 Aligned_cols=16 Identities=13% Similarity=0.167 Sum_probs=7.9
Q ss_pred CEEEEEECCCCEEEEE
Q ss_conf 3199990299699999
Q 000450 281 GHLVSVATCGNIIALV 296 (1496)
Q Consensus 281 ~~~vs~s~~g~~i~~v 296 (1496)
...+++.++|+++++.
T Consensus 70 ~~gla~~~dG~l~v~~ 85 (302)
T d2p4oa1 70 VSGLAFTSNGDLVATG 85 (302)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred CCEEEECCCCCEEEEE
T ss_conf 5368986778869983
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=96.12 E-value=0.025 Score=28.12 Aligned_cols=120 Identities=8% Similarity=0.057 Sum_probs=61.4
Q ss_pred CEEEEEEECCCCCCCCCCCCCEEEEEEC-CCCEEEEECCC-CCEE--EEE--CCCCCCEEEEEECCCCCCCCCCCEE-EE
Q ss_conf 6899999217877656768979999969-99499997999-9569--998--0269878999989999999999999-99
Q 000450 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSM-DCSIRIWDLGS-GNLI--TVM--HHHVAPVRQIILSPPQTEHPWSDCF-LS 644 (1496)
Q Consensus 572 ~V~~L~~spd~~~~~~~~~~~~LvSGs~-DgtI~iWDl~t-g~~l--~~l--~~H~~~V~~i~~sPd~~~~~~~~~l-~S 644 (1496)
.+.++.|+|+ ++++++.+. ...|.+|+... +... ... .......+.+.|+|+ ++.+ ++
T Consensus 146 h~h~v~~sPd---------G~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pd------g~~~yv~ 210 (365)
T d1jofa_ 146 GIHGMVFDPT---------ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT------GNYLYAL 210 (365)
T ss_dssp CEEEEEECTT---------SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT------SSEEEEE
T ss_pred CCEEEEECCC---------CCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCC------CCEEEEE
T ss_conf 1159788899---------998998207998799997068871665251111278874089998899------8669995
Q ss_pred EECCCCEEEEECCCCCEE--E---EEC--------------CCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf 968980999988999288--9---942--------------799982899994999999999748999889998899998
Q 000450 645 VGEDFSVALASLETLRVE--R---MFP--------------GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1496)
Q Consensus 645 gs~DgsV~lwdl~~~~~l--~---~~~--------------gH~~~V~~V~wspd~~~Lvtgs~D~s~~~D~dg~I~VWD 705 (1496)
.-.+++|.+|++...+.. . ..+ .+......+.++|++++|+++.+.... ...+.|..|+
T Consensus 211 ~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~--~~~~~i~~~~ 288 (365)
T d1jofa_ 211 MEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF--ELQGYIAGFK 288 (365)
T ss_dssp ETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST--TSCCEEEEEE
T ss_pred CCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCC--CCCEEEEEEE
T ss_conf 15899899999559875377873124024556556665444435776316998999978997135787--5422799998
Q ss_pred CCC
Q ss_conf 999
Q 000450 706 VKT 708 (1496)
Q Consensus 706 i~t 708 (1496)
+..
T Consensus 289 ~~~ 291 (365)
T d1jofa_ 289 LRD 291 (365)
T ss_dssp ECT
T ss_pred ECC
T ss_conf 568
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.54 E-value=0.081 Score=24.70 Aligned_cols=44 Identities=7% Similarity=0.072 Sum_probs=30.6
Q ss_pred CCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEEC
Q ss_conf 9982899994999999999748999889998899998999908999817
Q 000450 669 PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 669 ~~~V~~V~wspd~~~Lvtgs~D~s~~~D~dg~I~VWDi~tg~~~~~l~g 717 (1496)
......+.|+|++++++..|.. . + .-.+++++..+++.++.+..
T Consensus 409 ~~~~~~~~~S~~~~y~v~~~s~---~-~-~P~~~~~~~~~~~~~~~Le~ 452 (465)
T d1xfda1 409 NCTYFSASFSHSMDFFLLKCEG---P-G-VPMVTVHNTTDKKKMFDLET 452 (465)
T ss_dssp SCCCCEEEECTTSSEEEEECCS---S-S-SCCEEEEETTTCCEEEEEEC
T ss_pred CCCEEEEEECCCCCEEEEEEEC---C-C-CCEEEEEECCCCCEEEEECC
T ss_conf 8987999999999999998006---9-9-98499999999979999738
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.75 E-value=0.12 Score=23.66 Aligned_cols=20 Identities=5% Similarity=0.250 Sum_probs=13.4
Q ss_pred EEEEEECCCCEEEEEECCEE
Q ss_conf 19999029969999919837
Q 000450 282 HLVSVATCGNIIALVLKDHC 301 (1496)
Q Consensus 282 ~~vs~s~~g~~i~~v~~~~~ 301 (1496)
....++|+|+.++.+..+..
T Consensus 117 ~~~~wSPDG~~iafv~~~nl 136 (465)
T d1xfda1 117 QYAGWGPKGQQLIFIFENNI 136 (465)
T ss_dssp SBCCBCSSTTCEEEEETTEE
T ss_pred CEEEECCCCCEEEEEECCEE
T ss_conf 10024267856999961329
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.14 E-value=0.14 Score=23.00 Aligned_cols=115 Identities=8% Similarity=0.126 Sum_probs=72.8
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEC--CCCCCEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf 88668999992178776567689799999699949999799995699980--2698789999899999999999999996
Q 000450 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVG 646 (1496)
Q Consensus 569 H~~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~--~H~~~V~~i~~sPd~~~~~~~~~l~Sgs 646 (1496)
+......+++.++ +..+++....+.|.++|. .++.+..+- +.......+++.++ ++.+++-.
T Consensus 155 ~~~~~~~i~~d~~---------g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~------G~i~Vad~ 218 (279)
T d1q7fa_ 155 HLEFPNGVVVNDK---------QEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSN------GEILIADN 218 (279)
T ss_dssp TCSSEEEEEECSS---------SEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTT------CCEEEEEC
T ss_pred CCCCCCEEEECCC---------EEEEEEECCCCCEEEEEC-CCCEEEEECCCCCCCCCCCCCCCCC------CEEEEEEC
T ss_conf 0256624320120---------017862013551002304-7944453011321148762323147------86999978
Q ss_pred C-CCCEEEEECCCCCEEEEECC--CCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCC
Q ss_conf 8-98099998899928899427--999828999949999999997489998899988999989999
Q 000450 647 E-DFSVALASLETLRVERMFPG--HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1496)
Q Consensus 647 ~-DgsV~lwdl~~~~~l~~~~g--H~~~V~~V~wspd~~~Lvtgs~D~s~~~D~dg~I~VWDi~tg 709 (1496)
. ++.|.+++ .+++.+..+.. ....+..+++.|++. |++.+.+ +.|++|.....
T Consensus 219 ~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~-l~V~~~n--------~~v~~fr~~~~ 274 (279)
T d1q7fa_ 219 HNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGS-VVLASKD--------YRLYIYRYVQL 274 (279)
T ss_dssp SSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTE-EEEEETT--------TEEEEEECSCC
T ss_pred CCCCEEEEEC-CCCCEEEEEECCCCCCCEEEEEEECCCC-EEEEECC--------CEEEEEEEEEE
T ss_conf 9980899999-9999999996888889883799908991-9999189--------96999872203
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=93.06 E-value=0.15 Score=22.93 Aligned_cols=103 Identities=6% Similarity=0.051 Sum_probs=61.1
Q ss_pred EEEEEECCCCEEEEECCCCCEEE------EECC-CCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEE
Q ss_conf 99999699949999799995699------9802-6987899998999999999999999968980999988999288994
Q 000450 593 VLVSGSMDCSIRIWDLGSGNLIT------VMHH-HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF 665 (1496)
Q Consensus 593 ~LvSGs~DgtI~iWDl~tg~~l~------~l~~-H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~~~~l~~~ 665 (1496)
+.++-+..+.|..+|+.....+. .+.. +.+..-.+++..+ ++++++....+.|.+||.+.++.+..+
T Consensus 190 lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~------GnlyVa~~~~g~I~~~dp~~g~~~~~i 263 (314)
T d1pjxa_ 190 LIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED------NNLLVANWGSSHIEVFGPDGGQPKMRI 263 (314)
T ss_dssp EEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT------CCEEEEEETTTEEEEECTTCBSCSEEE
T ss_pred EEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECC------CCEEEEECCCCEEEEEECCCCEEEEEE
T ss_conf 99986024311776116765430156899713356664102578347------857999827999999969999799999
Q ss_pred CCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCC
Q ss_conf 2799982899994999999999748999889998899998999
Q 000450 666 PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1496)
Q Consensus 666 ~gH~~~V~~V~wspd~~~Lvtgs~D~s~~~D~dg~I~VWDi~t 708 (1496)
......+.+++|.|+++.|.+...+ ++.|+..++..
T Consensus 264 ~~p~~~~t~~afg~d~~~lyVt~~~-------~g~i~~~~~~~ 299 (314)
T d1pjxa_ 264 RCPFEKPSNLHFKPQTKTIFVTEHE-------NNAVWKFEWQR 299 (314)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETT-------TTEEEEEECSS
T ss_pred ECCCCCEEEEEEECCCCEEEEEECC-------CCCEEEEECCC
T ss_conf 7999987899992898999999878-------99199997899
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.57 E-value=0.17 Score=22.48 Aligned_cols=95 Identities=9% Similarity=-0.056 Sum_probs=39.9
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCEEEEE-ECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 88668999992178776567689799999-69994999979999569998026987899998999999999999999968
Q 000450 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSG-SMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1496)
Q Consensus 569 H~~~V~~L~~spd~~~~~~~~~~~~LvSG-s~DgtI~iWDl~tg~~l~~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~ 647 (1496)
+........++|+ +..++.. ...+...+|.............+.+......|+|| |+.++-.+.
T Consensus 169 ~~~~~~~~~~spd---------g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPD------G~~i~f~s~ 233 (269)
T d2hqsa1 169 EGSQNQDADVSSD---------GKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPN------GTMVIYSSS 233 (269)
T ss_dssp SSSEEEEEEECTT---------SSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTT------SSEEEEEEE
T ss_pred CCCCCCCCCCCCC---------CCEEEEEEECCCCEEEEEEECCCCCCEEEECCCCCCCEEECCC------CCEEEEEEC
T ss_conf 1222234322345---------4305778605880125676035644058506865445589899------999999981
Q ss_pred ---CCCEEEEECCCCCEEEEECCCCCCCEEEEECC
Q ss_conf ---98099998899928899427999828999949
Q 000450 648 ---DFSVALASLETLRVERMFPGHPNYPAKVVWDC 679 (1496)
Q Consensus 648 ---DgsV~lwdl~~~~~l~~~~gH~~~V~~V~wsp 679 (1496)
...+.++++..+... .+......+...+|+|
T Consensus 234 ~~~~~~l~~~~~dg~~~~-~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 234 QGMGSVLNLVSTDGRFKA-RLPATDGQVKFPAWSP 267 (269)
T ss_dssp ETTEEEEEEEETTSCCEE-ECCCSSSEEEEEEECC
T ss_pred CCCCCEEEEEECCCCCEE-EEECCCCCEEEEEECC
T ss_conf 799847999999999779-9857998588378289
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.45 E-value=0.18 Score=22.39 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=74.4
Q ss_pred CCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEC--CCCCCEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf 668999992178776567689799999699949999799995699980--269878999989999999999999999689
Q 000450 571 GAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1496)
Q Consensus 571 ~~V~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~--~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~D 648 (1496)
.....+++.++ +.+++.....+.+.+++. .++.+..+. .+......+.+.++ +..+++....
T Consensus 114 ~~p~~~avd~~---------G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~------g~i~v~d~~~ 177 (279)
T d1q7fa_ 114 QHPRGVTVDNK---------GRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDK------QEIFISDNRA 177 (279)
T ss_dssp SCEEEEEECTT---------SCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSS------SEEEEEEGGG
T ss_pred CCCCEECCCCC---------CCEEEEEECCCEEEEECC-CCCEEECCCCCCCCCCCCEEEECCC------EEEEEEECCC
T ss_conf 25420000147---------847999632632567626-8750100220010256624320120------0178620135
Q ss_pred CCEEEEECCCCCEEEEEC--CCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEEC
Q ss_conf 809999889992889942--799982899994999999999748999889998899998999908999817
Q 000450 649 FSVALASLETLRVERMFP--GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1496)
Q Consensus 649 gsV~lwdl~~~~~l~~~~--gH~~~V~~V~wspd~~~Lvtgs~D~s~~~D~dg~I~VWDi~tg~~~~~l~g 717 (1496)
+.|.+++.. ++.+..+. +....+..+++.++++.+++-..+ ++.|.+++. +|+.++++..
T Consensus 178 ~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~-------~~~v~~f~~-~G~~~~~~~~ 239 (279)
T d1q7fa_ 178 HCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHN-------NFNLTIFTQ-DGQLISALES 239 (279)
T ss_dssp TEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSS-------SCEEEEECT-TSCEEEEEEE
T ss_pred CCEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCC-------CCEEEEECC-CCCEEEEEEC
T ss_conf 510023047-9444530113211487623231478699997899-------808999999-9999999968
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.73 E-value=0.21 Score=21.83 Aligned_cols=101 Identities=12% Similarity=0.071 Sum_probs=51.8
Q ss_pred EEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEE
Q ss_conf 99999217877656768979999969994999979999569998026987899998999999999999999968980999
Q 000450 574 LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 653 (1496)
Q Consensus 574 ~~L~~spd~~~~~~~~~~~~LvSGs~DgtI~iWDl~tg~~l~~l~~H~~~V~~i~~sPd~~~~~~~~~l~Sgs~DgsV~l 653 (1496)
..+++.++ ++.+++...++.|..+|...................+++.++ ++++++-...+.|..
T Consensus 143 ~~i~~~~~---------g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~------g~l~vsd~~~~~i~~ 207 (260)
T d1rwia_ 143 DGVAVDNS---------GNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA------GTVYVTEHNTNQVVK 207 (260)
T ss_dssp CEEEECTT---------CCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTT------CCEEEEETTTTEEEE
T ss_pred CEEEECCC---------CCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEE------EEEEEEECCCCEEEE
T ss_conf 20545489---------988641025643322234310012221011478763123100------013432148998999
Q ss_pred EECCCCCEEEEE-CCCCCCCEEEEECCCCCEEEEEECC
Q ss_conf 988999288994-2799982899994999999999748
Q 000450 654 ASLETLRVERMF-PGHPNYPAKVVWDCPRGYIACLCRD 690 (1496)
Q Consensus 654 wdl~~~~~l~~~-~gH~~~V~~V~wspd~~~Lvtgs~D 690 (1496)
++...... ..+ ...-..+..+++++++..+++-..+
T Consensus 208 ~~~~~~~~-~~~~~~~~~~P~~i~~d~~g~l~vad~~~ 244 (260)
T d1rwia_ 208 LLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGN 244 (260)
T ss_dssp ECTTCSCC-EECCCCSCCCEEEEEECTTCCEEEEEGGG
T ss_pred EECCCCEE-EEECCCCCCCEEEEEEECCCCEEEEECCC
T ss_conf 96999769-99706998981799990899999997999
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.12 E-value=0.25 Score=21.43 Aligned_cols=57 Identities=7% Similarity=-0.020 Sum_probs=24.4
Q ss_pred EEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCEEEEE
Q ss_conf 999989999999999999999689809999889992889942799982899994999999999
Q 000450 625 RQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACL 687 (1496)
Q Consensus 625 ~~i~~sPd~~~~~~~~~l~Sgs~DgsV~lwdl~~~~~l~~~~gH~~~V~~V~wspd~~~Lvtg 687 (1496)
..+.+.|+ ++.+++...++.+..++.+..............+..+++.+++.++++.
T Consensus 143 ~~i~~~~~------g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd 199 (260)
T d1rwia_ 143 DGVAVDNS------GNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTE 199 (260)
T ss_dssp CEEEECTT------CCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEE
T ss_pred CEEEECCC------CCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEE
T ss_conf 20545489------9886410256433222343100122210114787631231000134321
|