Citrus Sinensis ID: 000463
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1479 | 2.2.26 [Sep-21-2011] | |||||||
| Q7DM58 | 1516 | ABC transporter C family | yes | no | 0.990 | 0.966 | 0.710 | 0.0 | |
| Q9LZJ5 | 1539 | ABC transporter C family | no | no | 0.975 | 0.937 | 0.704 | 0.0 | |
| Q7GB25 | 1514 | ABC transporter C family | no | no | 0.891 | 0.871 | 0.437 | 0.0 | |
| Q9LK64 | 1514 | ABC transporter C family | no | no | 0.907 | 0.886 | 0.425 | 0.0 | |
| Q8VZZ4 | 1466 | ABC transporter C family | no | no | 0.832 | 0.839 | 0.442 | 0.0 | |
| Q9M1C7 | 1506 | ABC transporter C family | no | no | 0.891 | 0.875 | 0.416 | 0.0 | |
| Q9LK62 | 1493 | ABC transporter C family | no | no | 0.824 | 0.816 | 0.440 | 0.0 | |
| Q8LGU1 | 1464 | ABC transporter C family | no | no | 0.941 | 0.950 | 0.392 | 0.0 | |
| Q9LYS2 | 1453 | ABC transporter C family | no | no | 0.823 | 0.838 | 0.405 | 0.0 | |
| Q7FB56 | 1053 | Putative ABC transporter | no | no | 0.681 | 0.957 | 0.440 | 0.0 |
| >sp|Q7DM58|AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 2182 bits (5654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1060/1491 (71%), Positives = 1247/1491 (83%), Gaps = 26/1491 (1%)
Query: 3 SASGWITSLSCSSSVVQSSEDTSVSLILHWLRFIFLSPCPQRALLSFVDLLFLLALIVFA 62
S+S W++ LSCS S V +SV + + WLRF+ LSPCPQRAL S VD +FLL FA
Sbjct: 5 SSSPWLSELSCSYSAV-VEHTSSVPVPIQWLRFVLLSPCPQRALFSAVDFIFLLC---FA 60
Query: 63 VQKLYSKFTASGL--SSSDISKPLIR-NNRASVRTTLWFKLSLIVTALLALCFTVICILT 119
+ KL+S ++S ++I KPLI R RTT WFK ++ VT LL+ C V+C+L
Sbjct: 61 LHKLFSSPSSSSEINGHAEIRKPLIGIRGRTPTRTTAWFKTTVAVTVLLSFCSVVLCVLA 120
Query: 120 FSGS--TQWPWKLVDALFWLVHAITHAVIAILIVHEKKFEAVTHPLSLRIYWVANFIIVS 177
F+G TQ PW L+D LFWL+HA+TH VIA+L++H+K+F A+ HPLSLRIYW+++F++ S
Sbjct: 121 FTGKRRTQRPWNLIDPLFWLIHAVTHLVIAVLVLHQKRFAALNHPLSLRIYWISSFVLTS 180
Query: 178 LFTTSGIIRLVSFETAQFCSLKLDDIVSIVSFPLLTVLLFIAIRGSTGIAVNSDSEPGMD 237
LF +GI +S SL+ +D+ S SFPL LL ++RG TG+ + P
Sbjct: 181 LFAVTGIFHFLSDAAT---SLRAEDVASFFSFPLTAFLLIASVRGITGLVTAETNSPTKP 237
Query: 238 EKTKLYEPLLSKSDVVSGFASASILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAE 297
E KSD VS +ASAS+ SK FW+WMNPLLSKGYKSPL ++++P+LSP+H+AE
Sbjct: 238 SDAVSVE----KSDNVSLYASASVFSKTFWLWMNPLLSKGYKSPLTLEQVPTLSPEHKAE 293
Query: 298 RMSELFESKWPKPHEKCKHPVRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDF 357
R++ LFES WPKP E HP+RTTLLRCFWKE+ FTA LAIVRL VMYVGPVLIQ FVDF
Sbjct: 294 RLALLFESSWPKPSENSSHPIRTTLLRCFWKEILFTAILAIVRLGVMYVGPVLIQSFVDF 353
Query: 358 TSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSC 417
TSGK SS ++GYYLVLILLVAKFVEV +THQFNF+SQKLGMLIR TLIT+LY+KGL+L+
Sbjct: 354 TSGKRSSPWQGYYLVLILLVAKFVEVLTTHQFNFDSQKLGMLIRSTLITALYKKGLKLTG 413
Query: 418 SARQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVG 477
SARQ HGVGQIVNYMAVDAQQLSDMMLQLHA+WLMPLQ++VAL+LLY LGASVIT V+G
Sbjct: 414 SARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQVTVALVLLYGSLGASVITAVIG 473
Query: 478 IIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFR 537
+ GV +F+++GT+RNN +QF++M NRDSRMKATNEMLNYMRVIKFQAWE+HFNKRIL FR
Sbjct: 474 LTGVFVFILLGTQRNNGYQFSLMGNRDSRMKATNEMLNYMRVIKFQAWENHFNKRILKFR 533
Query: 538 ESEFGWLTKFMYSISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQE 597
+ EFGWL+KF+YSI+GNIIV+WSTPVLIS LTFATAL GV LDAG+VFTTTTIFKILQE
Sbjct: 534 DMEFGWLSKFLYSIAGNIIVLWSTPVLISALTFATALALGVKLDAGTVFTTTTIFKILQE 593
Query: 598 PIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDE 657
PIR FPQSMISLSQAMISL RLD YM+S+EL ++VER GCD N AVEVRDG FSWDDE
Sbjct: 594 PIRTFPQSMISLSQAMISLGRLDSYMMSKELSEDAVERALGCDGNTAVEVRDGSFSWDDE 653
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTS 717
+ E L +IN ++KKG+LTAIVGTVGSGKSSLLAS+LGEMH+ISG+V+VCG+T YVAQTS
Sbjct: 654 DNEPALSDINFKVKKGELTAIVGTVGSGKSSLLASVLGEMHRISGQVRVCGSTGYVAQTS 713
Query: 718 WIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQR 777
WI+NGT+++NILFGLPM R KY +V+ VC LEKDL+MME+GD+TEIGERGINLSGGQKQR
Sbjct: 714 WIENGTVQDNILFGLPMVREKYNKVLNVCSLEKDLQMMEFGDKTEIGERGINLSGGQKQR 773
Query: 778 IQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDL 837
IQLARAVYQ+CD+YLLDDVFSAVDAHTGSDIFK+CVRGALKGKT++LVTHQVDFLHNVD
Sbjct: 774 IQLARAVYQECDVYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTVLLVTHQVDFLHNVDC 833
Query: 838 ILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVEVG-KTMPSGNSPKTPKSPQI 896
ILVMR+G IV+SG+Y+ L++SG+DFG LVAAHETSMELVE G + SP+TP SP
Sbjct: 834 ILVMRDGKIVESGKYDELVSSGLDFGELVAAHETSMELVEAGADSAAVATSPRTPTSPHA 893
Query: 897 TS--------NLQEANGEN-KSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYG 947
+S +L + N E+ KS S+ + SKLIKEEERETG+V L VYK YCTEAYG
Sbjct: 894 SSPRTSMESPHLSDLNDEHIKSFLGSHIVEDGSKLIKEEERETGQVSLGVYKQYCTEAYG 953
Query: 948 WWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVR 1007
WWG+V VL S+ WQGSLMA DYWL+YETS +++SF+ S+FI Y A++S+V++ +R
Sbjct: 954 WWGIVLVLFFSLTWQGSLMASDYWLAYETSAKNAISFDASVFILGYVIIALVSIVLVSIR 1013
Query: 1008 AYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGI 1067
+Y+VTH+GLKTAQIFF QIL SILHAPMSFFDTTPSGRILSRASTDQTN+D+ +PF +G+
Sbjct: 1014 SYYVTHLGLKTAQIFFRQILNSILHAPMSFFDTTPSGRILSRASTDQTNVDILIPFMLGL 1073
Query: 1068 TVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIH 1127
V+MY TLL IFI+TCQYAWPT F VIPL W N WYR YYL++SRELTR+DSITKAP+IH
Sbjct: 1074 VVSMYTTLLSIFIVTCQYAWPTAFFVIPLGWLNIWYRNYYLASSRELTRMDSITKAPIIH 1133
Query: 1128 HFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCL 1187
HFSESI+GVMTIR+F KQ F QENV RVN NLRMDFHNNGSNEWLGFRLEL+GS+ C+
Sbjct: 1134 HFSESIAGVMTIRSFRKQELFRQENVKRVNDNLRMDFHNNGSNEWLGFRLELVGSWVLCI 1193
Query: 1188 ATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPS 1247
+ LFM+LLPS++I+PENVGLSLSYGLSLN VLF+AIYMSCFVEN+MVSVERIKQFT+IPS
Sbjct: 1194 SALFMVLLPSNVIRPENVGLSLSYGLSLNSVLFFAIYMSCFVENKMVSVERIKQFTDIPS 1253
Query: 1248 EAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSG 1307
E+ W+ ++ LPP NWP HGNV L DL+VRYR NTPLVLKGITL I GGEK+GVVGRTGSG
Sbjct: 1254 ESEWERKETLPPSNWPFHGNVHLEDLKVRYRPNTPLVLKGITLDIKGGEKVGVVGRTGSG 1313
Query: 1308 KSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIG 1367
KSTLIQV FRLVEPSGG+IIIDGIDIS LGLHDLRSRFGIIPQEPVLFEGTVRSNIDP
Sbjct: 1314 KSTLIQVLFRLVEPSGGKIIIDGIDISTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTE 1373
Query: 1368 QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLF 1427
QYSDEEIWKSLERCQLKDVVA KP+KLDSLV D+G+NWSVGQRQLLCLGRVMLK SRLLF
Sbjct: 1374 QYSDEEIWKSLERCQLKDVVATKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLF 1433
Query: 1428 MDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
+DEATASVDSQTDA IQ+IIRE+FA+CTIISIAHRIPTVMD DRV+V+DAG
Sbjct: 1434 LDEATASVDSQTDAVIQKIIREDFASCTIISIAHRIPTVMDGDRVLVIDAG 1484
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Involved in the regulation of stomatal aperture. May function as a high-capacity pump for folates. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q9LZJ5|AB14C_ARATH ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2181 bits (5651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1046/1484 (70%), Positives = 1248/1484 (84%), Gaps = 41/1484 (2%)
Query: 30 LHWLRFIFLSPCPQRALLSFVDLLFLLALIVFAVQKLYSKFTASGLSSSDISKPLIRNNR 89
+ WLRFI LSPCPQR L S VD+LFLL L FA+QKL S ++ +DI+KPL+
Sbjct: 30 IQWLRFILLSPCPQRLLSSTVDVLFLLILFFFAIQKLCSSSSSRTNGEADITKPLLGRRT 89
Query: 90 ASVRTTLWFKLSLIVTALLALCFTVICILTFSGSTQWPWKLVDALFWLVHAITHAVIAIL 149
+ T L FK +++VT +L+ C V+C+ F +T+ KLVD LFWL+HA+T+ VIA+L
Sbjct: 90 RTRTTGL-FKTTVVVTIVLSFCSLVLCVSAFF-TTRTKLKLVDTLFWLIHAVTNVVIAVL 147
Query: 150 IVHEKKFEAVTHPLSLRIYWVANFIIVSLFTTSGIIRLVSFETAQFCSLKLDDIVSIVSF 209
++H K+F + +HPL+LRIYWV NF++ +LFT SGI+ L+S + A SL+ DD+ S +SF
Sbjct: 148 VLHLKRFASPSHPLTLRIYWVFNFVVTTLFTVSGILHLLSDDPAA-ASLRADDVASFISF 206
Query: 210 PLLTVLLFIAIRGSTGIAVNSDSEPGMDEKTKLYEPLLSKSDVVSGFASASILSKAFWIW 269
PL VLL ++I+GSTG+ V + + + K + ++ KS+ VS +ASAS +SK FW+W
Sbjct: 207 PLTAVLLLVSIKGSTGVVVTTSN---VTAPAKSNDVVVEKSENVSLYASASFISKTFWLW 263
Query: 270 MNPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFESKWPKPHEKCKHPVRTTLLRCFWKE 329
MNPLL KGYKSPL +D++P+LSP+HRAE+++ LFESKWPKP E ++PVRTTL+RCFWKE
Sbjct: 264 MNPLLRKGYKSPLNLDQVPTLSPEHRAEKLATLFESKWPKPQENSRNPVRTTLIRCFWKE 323
Query: 330 VAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQF 389
+AFTA LAI+RL V+YVGPVLIQ FVDFTSGK SS +GYYLVLILL+AKFVEV STHQF
Sbjct: 324 IAFTAVLAIIRLSVIYVGPVLIQSFVDFTSGKRSSPSQGYYLVLILLIAKFVEVLSTHQF 383
Query: 390 NFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHAV 449
NFNSQKLGMLIR TLIT+LY+KGL+L+ SARQ HGVGQIVNYMAVDAQQLSDMMLQLHA+
Sbjct: 384 NFNSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAI 443
Query: 450 WLMPLQISVALILLYNCLGASVITTVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKA 509
WLMPLQ++ A++LLYN LG SV+TTV+G+ G+ +F+++GTKRNNR+QF++M NRDSRMKA
Sbjct: 444 WLMPLQVAAAIVLLYNTLGPSVVTTVIGLTGIFVFILLGTKRNNRYQFSLMMNRDSRMKA 503
Query: 510 TNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMWSTPVLISTLT 569
TNEMLNYMRVIKFQAWEDHFN+RIL FRE EFGWL+KF+YSI+GNIIV+WSTPVLIS LT
Sbjct: 504 TNEMLNYMRVIKFQAWEDHFNERILKFREMEFGWLSKFLYSIAGNIIVLWSTPVLISALT 563
Query: 570 FATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELV 629
F TA+ GV LDAG+VFTTTTIFKILQEPIR FPQSMISLSQAMISL RLD YM+SREL
Sbjct: 564 FTTAVFLGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDAYMMSRELS 623
Query: 630 NESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSL 689
E+VER +GCD N+AVE++DG FSWDDE+ E ++NIN E+KKG+L AIVGTVGSGKSSL
Sbjct: 624 EETVERSQGCDGNVAVEIKDGSFSWDDEDDEPAIENINFEVKKGELAAIVGTVGSGKSSL 683
Query: 690 LASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLE 749
LAS+LGEMHK+SGKV+VCGTTAYVAQTSWIQNGT+++NILFGLPMNR+KY EV++VCCLE
Sbjct: 684 LASVLGEMHKLSGKVRVCGTTAYVAQTSWIQNGTVQDNILFGLPMNRSKYNEVLKVCCLE 743
Query: 750 KDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIF 809
KD+++ME+GDQTEIGERGINLSGGQKQRIQLARAVYQ+ D+YLLDDVFSAVDAHTGSDIF
Sbjct: 744 KDMQIMEFGDQTEIGERGINLSGGQKQRIQLARAVYQESDVYLLDDVFSAVDAHTGSDIF 803
Query: 810 KECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAH 869
K+CVRGALKGKTI+LVTHQVDFLHNVD ILVMR+GMIVQSG+Y+ L++SG+DFG LVAAH
Sbjct: 804 KKCVRGALKGKTILLVTHQVDFLHNVDRILVMRDGMIVQSGKYDELVSSGLDFGELVAAH 863
Query: 870 ETSMELVEVGKTMPSG----------------NSPKTPKSPQI----------------- 896
ETSMELVE G + SP+ PKSP++
Sbjct: 864 ETSMELVEAGSASATAANVPMASPITQRSISIESPRQPKSPKVHRTTSMESPRVLRTTSM 923
Query: 897 -TSNLQEANGEN-KSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAV 954
+ L E N E+ KS SN + S+LIKEEERE G+V VYK+Y TEAYGWWG++ V
Sbjct: 924 ESPRLSELNDESIKSFLGSNIPEDGSRLIKEEEREVGQVSFQVYKLYSTEAYGWWGMILV 983
Query: 955 LLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHV 1014
+ SVAWQ SLMA DYWL+YETS + +SF+ ++FI VY A +S+V++ +RA++VTH+
Sbjct: 984 VFFSVAWQASLMASDYWLAYETSAKNEVSFDATVFIRVYVIIAAVSIVLVCLRAFYVTHL 1043
Query: 1015 GLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYIT 1074
GLKTAQIFF QIL S++HAPMSFFDTTPSGRILSRASTDQTN+D+F+PF +G+ MY T
Sbjct: 1044 GLKTAQIFFKQILNSLVHAPMSFFDTTPSGRILSRASTDQTNVDIFIPFMIGLVATMYTT 1103
Query: 1075 LLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESIS 1134
LL IFI+TCQYAWPT+F +IPL W N WYRGYYL++SRELTRLDSITKAPVIHHFSESI+
Sbjct: 1104 LLSIFIVTCQYAWPTVFFIIPLGWLNIWYRGYYLASSRELTRLDSITKAPVIHHFSESIA 1163
Query: 1135 GVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMIL 1194
GVMTIRAF KQ F QENV RVN NLRMDFHNNGSNEWLGFRLEL+GS+ C++ LFM++
Sbjct: 1164 GVMTIRAFKKQPMFRQENVKRVNANLRMDFHNNGSNEWLGFRLELIGSWVLCISALFMVM 1223
Query: 1195 LPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKME 1254
LPS+IIKPENVGLSLSYGLSLNGVLFWAIY+SCF+EN+MVSVERIKQFT+IP+EA W+++
Sbjct: 1224 LPSNIIKPENVGLSLSYGLSLNGVLFWAIYLSCFIENKMVSVERIKQFTDIPAEAKWEIK 1283
Query: 1255 DRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQV 1314
+ PPPNWP GN+ L D++VRYR NTPLVLKG+T+ I GGEKIGVVGRTGSGKSTLIQV
Sbjct: 1284 ESRPPPNWPYKGNIRLEDVKVRYRPNTPLVLKGLTIDIKGGEKIGVVGRTGSGKSTLIQV 1343
Query: 1315 FFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEI 1374
FRLVEPSGG+IIIDGIDI LGLHDLRSRFGIIPQEPVLFEGTVRSNIDP +YSDEEI
Sbjct: 1344 LFRLVEPSGGKIIIDGIDICTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEKYSDEEI 1403
Query: 1375 WKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATAS 1434
WKSLERCQLKDVVA+KP+KLDSLVAD+G+NWSVGQRQLLCLGRVMLK SR+LF+DEATAS
Sbjct: 1404 WKSLERCQLKDVVASKPEKLDSLVADNGENWSVGQRQLLCLGRVMLKRSRILFLDEATAS 1463
Query: 1435 VDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
VDSQTDA IQ+IIRE+F+ CTIISIAHRIPTVMDCDRV+V+DAG
Sbjct: 1464 VDSQTDAMIQKIIREDFSDCTIISIAHRIPTVMDCDRVLVIDAG 1507
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7GB25|AB5C_ARATH ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1155 bits (2989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 599/1369 (43%), Positives = 865/1369 (63%), Gaps = 50/1369 (3%)
Query: 145 VIAILIVHEKKFEAVTHPLSLRIYWVANFIIVSLFTTSGIIRLVSFETAQFCSLKLDDIV 204
V++ L++H K + P +RI+W F I L T R ++ E CS + +
Sbjct: 125 VLSFLVLHLKYKSSEKLPFLVRIWWFLAFSIC-LCTMYVDGRRLAIEGWSRCSSHV--VA 181
Query: 205 SIVSFPLLTVLLFIAIRGSTGIAVNSDSEPGMDEKTKLYEPLLSKSDV----VSGFASAS 260
++ P L L F+A RG +GI V S + L EPLL + + V+ +++A
Sbjct: 182 NLAVTPALGFLCFLAWRGVSGIQVTRSS-------SDLQEPLLVEEEAACLKVTPYSTAG 234
Query: 261 ILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFESKWP--KPHEKCKHP- 317
++S W++PLLS G K PL++ +IP L+P+ RA+ ++ +S W K K P
Sbjct: 235 LVSLITLSWLDPLLSAGSKRPLELKDIPLLAPRDRAKSSYKVLKSNWKRCKSENPSKPPS 294
Query: 318 VRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLV 377
+ +++ FWKE A A A + V YVGP LI FVD+ GK +EGY L I
Sbjct: 295 LARAIMKSFWKEAACNAVFAGLNTLVSYVGPYLISYFVDYLGGKEIFPHEGYVLAGIFFT 354
Query: 378 AKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQ 437
+K +E +T Q+ LGM +R L +YRKGL+LS A+Q H G+IVNYMAVD Q
Sbjct: 355 SKLIETVTTRQWYMGVDILGMHVRSALTAMVYRKGLKLSSIAKQNHTSGEIVNYMAVDVQ 414
Query: 438 QLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGIIGVMIFVVMGTKRNNRFQF 497
++ D LH +W++P+QI +AL +LY +G + + T+V I ++ + K +Q
Sbjct: 415 RIGDYSWYLHDIWMLPMQIVLALAILYKSVGIAAVATLVATIISILVTIPLAKVQEDYQD 474
Query: 498 NVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIV 557
+M +D RM+ T+E L MRV+K QAWED + R+ RE E+GWL K +YS + +
Sbjct: 475 KLMTAKDERMRKTSECLRNMRVLKLQAWEDRYRVRLEEMREEEYGWLRKALYSQAFVTFI 534
Query: 558 MWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLA 617
WS+P+ ++ +TFAT++ G L AG V + F+ILQEP+RNFP + ++Q +SL
Sbjct: 535 FWSSPIFVAAVTFATSIFLGTQLTAGGVLSALATFRILQEPLRNFPDLVSMMAQTKVSLD 594
Query: 618 RLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTA 677
R+ ++ EL ++ + NIA+E++DGVF WD + L I ++++KG A
Sbjct: 595 RISGFLQEEELQEDATVVIPRGLSNIAIEIKDGVFCWDPFSSRPTLSGIQMKVEKGMRVA 654
Query: 678 IVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRA 737
+ GTVGSGKSS ++ ILGE+ KISG+V++CGTT YV+Q++WIQ+G IEENILFG PM +
Sbjct: 655 VCGTVGSGKSSFISCILGEIPKISGEVRICGTTGYVSQSAWIQSGNIEENILFGSPMEKT 714
Query: 738 KYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVF 797
KY V++ C L+KD+E+ +GDQT IGERGINLSGGQKQR+QLARA+YQD DIYLLDD F
Sbjct: 715 KYKNVIQACSLKKDIELFSHGDQTIIGERGINLSGGQKQRVQLARALYQDADIYLLDDPF 774
Query: 798 SAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLN 857
SA+DAHTGSD+F++ + AL KT++ VTHQV+FL DLILV++EG I+QSG+Y+ LL
Sbjct: 775 SALDAHTGSDLFRDYILSALAEKTVVFVTHQVEFLPAADLILVLKEGRIIQSGKYDDLLQ 834
Query: 858 SGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSP--------QITSNLQEANGEN-- 907
+G DF ALV+AH ++E +++ PS +S + ++P S++ E + E
Sbjct: 835 AGTDFKALVSAHHEAIEAMDI----PSPSSEDSDENPIRDSLVLHNPKSDVFENDIETLA 890
Query: 908 KSVEQSNSDKG---------------NSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVV 952
K V++ S +L++EEER GKV + VY Y AY +
Sbjct: 891 KEVQEGGSASDLKAIKEKKKKAKRSRKKQLVQEEERVKGKVSMKVYLSYMGAAYKGALIP 950
Query: 953 AVLLLSVAWQGSLMAGDYWLSY---ETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAY 1009
++L A+Q +A ++W+++ +T D S +P+L + VY + A S V + VRA
Sbjct: 951 LIILAQAAFQFLQIASNWWMAWANPQTEGDES-KVDPTLLLIVYTALAFGSSVFIFVRAA 1009
Query: 1010 FVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITV 1069
V GL AQ F +LRS+ APMSFFD+TP+GRIL+R S DQ+ +DL +PF +G
Sbjct: 1010 LVATFGLAAAQKLFLNMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFA 1069
Query: 1070 AMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHF 1129
+ I L GI + W LV+P+A A +W + YY+++SREL R+ SI K+P+IH F
Sbjct: 1070 STTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYMASSRELVRIVSIQKSPIIHLF 1129
Query: 1130 SESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLAT 1189
ESI+G TIR FG++ F + N+ ++ +R F + + EWL R+ELL + F
Sbjct: 1130 GESIAGAATIRGFGQEKRFIKRNLYLLDCFVRPFFCSIAAIEWLCLRMELLSTLVFAFCM 1189
Query: 1190 LFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEA 1249
+ ++ P I P GL+++YGL+LNG L I C +EN+++S+ERI Q+++I EA
Sbjct: 1190 VLLVSFPHGTIDPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIYQYSQIVGEA 1249
Query: 1250 AWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKS 1309
+ED PP +WPA G ++L+D++VRY N P VL G++ GG+KIG+VGRTGSGKS
Sbjct: 1250 PAIIEDFRPPSSWPATGTIELVDVKVRYAENLPTVLHGVSCVFPGGKKIGIVGRTGSGKS 1309
Query: 1310 TLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQY 1369
TLIQ FRL+EP+ G+I ID IDIS +GLHDLRSR GIIPQ+P LFEGT+R+N+DP+ ++
Sbjct: 1310 TLIQALFRLIEPTAGKITIDNIDISQIGLHDLRSRLGIIPQDPTLFEGTIRANLDPLEEH 1369
Query: 1370 SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMD 1429
SD++IW++L++ QL DVV K KLDS V ++GDNWSVGQRQL+ LGR +LK +++L +D
Sbjct: 1370 SDDKIWEALDKSQLGDVVRGKDLKLDSPVLENGDNWSVGQRQLVSLGRALLKQAKILVLD 1429
Query: 1430 EATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
EATASVD+ TD IQ+IIR EF CT+ +IAHRIPTV+D D V+V+ G
Sbjct: 1430 EATASVDTATDNLIQKIIRTEFEDCTVCTIAHRIPTVIDSDLVLVLSDG 1478
|
Pump for glutathione S-conjugates. Involved in regulation of K(+) and Na(+) cell content. Mediates resistance to NaCl and Li(+), confers sensitivity to sulfonylurea drugs such as glibenclamide (inducer of stomatal opening), and required for stomatal opening regulation by auxin, abscisic acid (ABA) and external Ca(2+). Transports oestradiol-17-(beta-D-glucuronide) (E(2)17G). Involved in the root auxin content regulation that controls the transition from primary root elongation to lateral root formation. Plays a role in ABA-mediated germination inhibition. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1088 bits (2815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/1375 (42%), Positives = 856/1375 (62%), Gaps = 33/1375 (2%)
Query: 129 KLVDALFWLVHAITHAVIAILIVHEKKFEAVTHPLSLRIYWVANFIIVSLFTTSGIIRLV 188
+LV +L +L+ ++ V++I + + E P LR+ W+ +++VS ++ ++ V
Sbjct: 115 QLVSSLGFLLGMVSWGVLSICLHRCRDCEHKKAPFLLRL-WLVFYLVVSCYSL--VVDFV 171
Query: 189 SFETAQFCSLKLDDIVSIVSFPLLTVLLFIAI-----RGSTGIAVN-----SDSEPGMDE 238
+E + + L + IV+F L ++A+ S G+ DS G D+
Sbjct: 172 MYERRETVPVHLL-VFDIVAFIAAVFLGYVAVLKKDRSNSNGVLEEPLLNGGDSRVGGDD 230
Query: 239 KTKLYEPLLSKSDVVSGFASASILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAER 298
+L + + S + ++ A ILS + WM+PL+ G K L ++++P L
Sbjct: 231 SVELNKT--NGSGEATPYSRAGILSLLTFSWMSPLIDIGNKKTLDLEDVPQLHDTDSVVG 288
Query: 299 MSELFESKWPKPHEKCKHPVRT-TLLRCFWK----EVAFTAFLAIVRLCVMYVGPVLIQR 353
++ F S P + V T L++ + E+ TAF A + YVGP LI
Sbjct: 289 LAPKFRSMLESPDGGERSGVTTFKLIKALYFTAQWEILVTAFFAFIYTVASYVGPALIDT 348
Query: 354 FVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGL 413
FV + +G+ +EGY LV+ AK VE S + F QK+G+ +R L+ +Y KGL
Sbjct: 349 FVQYLNGRRQYNHEGYVLVITFFAAKIVECLSQRHWFFRLQKVGIRMRSALVAMIYEKGL 408
Query: 414 RLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVIT 473
LSC ++Q G+I+N+M VDA+++ + +H W++ LQ+ +AL +LY LG + I
Sbjct: 409 TLSCQSKQGRTSGEIINFMTVDAERIGNFSWYMHDPWMVLLQVGLALWILYRNLGLASIA 468
Query: 474 TVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRI 533
+V I VM+ + RFQ +M+ +DSRMK+T+E+L MR++K Q WE F +I
Sbjct: 469 ALVATIIVMLINFPFGRMQERFQEKLMEAKDSRMKSTSEILRNMRILKLQGWEMKFLSKI 528
Query: 534 LSFRESEFGWLTKFMYSISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFK 593
R+SE GWL K++Y+ + V W P L+S TF +L G+PL++G + + F+
Sbjct: 529 FDLRKSEEGWLKKYVYNSAVISFVFWGAPTLVSVSTFGACILLGIPLESGKILSALATFR 588
Query: 594 ILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFS 653
ILQEPI N P ++ + Q +SL RL Y+ L + VER+ ++AVEV + S
Sbjct: 589 ILQEPIYNLPDTISMIVQTKVSLDRLASYLCLDNLQPDIVERLPKGSSDVAVEVINSTLS 648
Query: 654 WDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYV 713
WD + LK+IN ++ G A+ GTVGSGKSSLL+S+LGE+ K+SG +KVCGT AYV
Sbjct: 649 WDVSSSNPTLKDINFKVFPGMKVAVCGTVGSGKSSLLSSLLGEVPKVSGSLKVCGTKAYV 708
Query: 714 AQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGG 773
AQ+ WIQ+G IE+NILFG PM R +Y +V+ C L KDLE++ +GDQT IGERGINLSGG
Sbjct: 709 AQSPWIQSGKIEDNILFGKPMERERYDKVLEACSLSKDLEILSFGDQTVIGERGINLSGG 768
Query: 774 QKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLH 833
QKQRIQ+ARA+YQD DIYL DD FSAVDAHTGS +FKE + G L K++I VTHQV+FL
Sbjct: 769 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLCSKSVIYVTHQVEFLP 828
Query: 834 NVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVE------VGKTMPSGNS 887
DLILVM++G I Q+G+YN +LNSG DF L+ AH+ ++ +V+ V + G
Sbjct: 829 AADLILVMKDGRISQAGKYNDILNSGTDFMELIGAHQEALAVVDSVDANSVSEKSALGQE 888
Query: 888 PKTPKSP-QITSNLQEANGENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAY 946
K + L+ + +N +E + ++I+EEERE G V L VY Y T AY
Sbjct: 889 NVIVKDAIAVDEKLESQDLKNDKLESVEPQR---QIIQEEEREKGSVALDVYWKYITLAY 945
Query: 947 GWWGVVAVLLLSVAWQGSLMAGDYWLSYET--SEDHSMSFNPSLFIGVYGSTAVLSMVIL 1004
G V +LL V +Q + +YW+++ T SED S + VY + A S + +
Sbjct: 946 GGALVPFILLGQVLFQLLQIGSNYWMAWATPVSEDVQAPVKLSTLMIVYVALAFGSSLCI 1005
Query: 1005 VVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFF 1064
++RA + G KTA F ++ I +PMSFFD+TPSGRI+SRASTDQ+ +DL LP+
Sbjct: 1006 LLRATLLVTAGYKTATELFHKMHHCIFRSPMSFFDSTPSGRIMSRASTDQSAVDLELPYQ 1065
Query: 1065 VGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAP 1124
G I L+GI + Q +W + IP+ A+ WY+ YY++ +REL+RL + KAP
Sbjct: 1066 FGSVAITVIQLIGIIGVMSQVSWLVFLVFIPVVAASIWYQRYYIAAARELSRLVGVCKAP 1125
Query: 1125 VIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFT 1184
+I HFSE+ISG TIR+F ++ F +N+ +G R F+ G+ EWL FRL++L S T
Sbjct: 1126 LIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGYSRPKFYTAGAMEWLCFRLDMLSSLT 1185
Query: 1185 FCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTE 1244
F + +F++ +P+ +I P GL+++YGLSLN + W I+ C +EN+++SVERI Q+
Sbjct: 1186 FVFSLVFLVSIPTGVIDPSLAGLAVTYGLSLNTLQAWLIWTLCNLENKIISVERILQYAS 1245
Query: 1245 IPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRT 1304
+PSE +E P +WP+ G V++ DLQVRY + PLVL+GIT + GG + G+VGRT
Sbjct: 1246 VPSEPPLVIESNRPEQSWPSRGEVEIRDLQVRYAPHMPLVLRGITCTFKGGLRTGIVGRT 1305
Query: 1305 GSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNID 1364
GSGKSTLIQ FR+VEPS G I IDG++I +GLHDLR R IIPQ+P +FEGT+RSN+D
Sbjct: 1306 GSGKSTLIQTLFRIVEPSAGEIRIDGVNILTIGLHDLRLRLSIIPQDPTMFEGTMRSNLD 1365
Query: 1365 PIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSR 1424
P+ +Y+D++IW++L++CQL D V K KLDS V+++GDNWS+GQRQL+CLGRV+LK S+
Sbjct: 1366 PLEEYTDDQIWEALDKCQLGDEVRKKEQKLDSSVSENGDNWSMGQRQLVCLGRVLLKRSK 1425
Query: 1425 LLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479
+L +DEATASVD+ TD IQ+ +RE F+ CT+I+IAHRI +V+D D V+++ G+
Sbjct: 1426 ILVLDEATASVDTATDNLIQKTLREHFSDCTVITIAHRISSVIDSDMVLLLSNGI 1480
|
Pump for glutathione S-conjugates. Mediates the transport of glutathione conjugates such as chlorodinitrobenzene-GS (DNB-GS), and of chlorophyll catabolites such as Bn-NCC-1. Transports also heavy metals such as cadmium (Cd). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8VZZ4|AB6C_ARATH ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 1053 bits (2723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/1249 (44%), Positives = 785/1249 (62%), Gaps = 18/1249 (1%)
Query: 242 LYEPLLSKSD------VVSGFASASILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHR 295
L EPLLS ++ V + F+ A ILS+ + WM+PL++ G + + I ++P L
Sbjct: 189 LKEPLLSSAESSDNEEVTAPFSKAGILSRMSFSWMSPLITLGNEKIIDIKDVPQLDRSDT 248
Query: 296 AERMSELFESK--WPKPHEK-CKHPVRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQ 352
E + +F SK W + + L W+++ +A LA V YV P L+
Sbjct: 249 TESLFWIFRSKLEWDDGERRITTFKLIKALFLSVWRDIVLSALLAFVYTVSCYVAPYLMD 308
Query: 353 RFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKG 412
FV + +G +GY LV VAK VE + Q+ F QK G+ +R L++ +Y KG
Sbjct: 309 NFVQYLNGNRQYKNQGYVLVTTFFVAKLVECQTQRQWFFRGQKAGLGMRSVLVSMIYEKG 368
Query: 413 LRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVI 472
L L C ++Q H G+I+N MAVDA ++S +H W++ LQ+S+AL +LY LG I
Sbjct: 369 LTLPCHSKQGHTSGEIINLMAVDADRISAFSWFMHDPWILVLQVSLALWILYKSLGLGSI 428
Query: 473 TTVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKR 532
I VM+ K +FQ ++MK++D+RMK T+E+L M+++K Q WE F +
Sbjct: 429 AAFPATILVMLANYPFAKLEEKFQSSLMKSKDNRMKKTSEVLLNMKILKLQGWEMKFLSK 488
Query: 533 ILSFRESEFGWLTKFMYSISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIF 592
IL R E GWL KF+Y+ S V+W+ P IS F LL +PL++G + F
Sbjct: 489 ILELRHIEAGWLKKFVYNSSAINSVLWAAPSFISATAFGACLLLKIPLESGKILAALATF 548
Query: 593 KILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVF 652
+ILQ PI P+++ + Q +SL R+ ++ +L + V R+ +AVE+ +G F
Sbjct: 549 RILQGPIYKLPETISMIVQTKVSLNRIASFLCLDDLQQDVVGRLPSGSSEMAVEISNGTF 608
Query: 653 SWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAY 712
SWDD + L+++N ++ +G AI GTVGSGKSSLL+SILGE+ KISG +KVCG AY
Sbjct: 609 SWDDSSPIPTLRDMNFKVSQGMNVAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAY 668
Query: 713 VAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSG 772
+AQ+ WIQ+G +EENILFG PM R Y V+ C L KDLE++ + DQT IGERGINLSG
Sbjct: 669 IAQSPWIQSGKVEENILFGKPMEREWYDRVLEACSLNKDLEILPFHDQTVIGERGINLSG 728
Query: 773 GQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFL 832
GQKQRIQ+ARA+YQD DIYL DD FSAVDAHTGS +FKE + G L+ KT+I VTHQV+FL
Sbjct: 729 GQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRHKTVIYVTHQVEFL 788
Query: 833 HNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPK 892
DLILVM++G I Q+G+Y+ +L+SG DF LV AH ++ ++ +T + T K
Sbjct: 789 PEADLILVMKDGKITQAGKYHEILDSGTDFMELVGAHTEALATIDSCETGYASEKSTTDK 848
Query: 893 SPQITSNLQEANGENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVV 952
++ + ++ E + +K + +L++EEERE GKVG VYK Y AYG +
Sbjct: 849 ENEVLHHKEKQ-------ENGSDNKPSGQLVQEEEREKGKVGFTVYKKYMALAYGGAVIP 901
Query: 953 AVLLLSVAWQGSLMAGDYWLSYET--SEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYF 1010
+L++ V +Q + +YW+++ T S+D + I VY AV S +++RA
Sbjct: 902 LILVVQVLFQLLSIGSNYWMTWVTPVSKDVEPPVSGFTLILVYVLLAVASSFCILIRALL 961
Query: 1011 VTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVA 1070
V G K A F+Q+ I A MSFFD TP GRIL+RASTDQ+ DL LP
Sbjct: 962 VAMTGFKMATELFTQMHLRIFRASMSFFDATPMGRILNRASTDQSVADLRLPGQFAYVAI 1021
Query: 1071 MYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFS 1130
I +LGI + Q AW + + IP+ A WYR YY+S +REL RL I+++PV+HHFS
Sbjct: 1022 AAINILGIIGVIVQVAWQVLIVFIPVVAACAWYRQYYISAARELARLAGISRSPVVHHFS 1081
Query: 1131 ESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATL 1190
E++SG+ TIR+F ++ F + + + R+ FH+ G+ EWL FRLELL +F F + +
Sbjct: 1082 ETLSGITTIRSFDQEPRFRGDIMRLSDCYSRLKFHSTGAMEWLCFRLELLSTFAFASSLV 1141
Query: 1191 FMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAA 1250
++ P +I P GL+++Y L+LN + I+ C +EN+M+SVER+ Q+T IPSE
Sbjct: 1142 ILVSAPEGVINPSLAGLAITYALNLNTLQATLIWTLCDLENKMISVERMLQYTNIPSEPP 1201
Query: 1251 WKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKST 1310
+E P +WP+ G + + +LQVRY + P+VL G+T + GG K G+VGRTG GKST
Sbjct: 1202 LVIETTRPEKSWPSRGEITICNLQVRYGPHLPMVLHGLTCTFPGGLKTGIVGRTGCGKST 1261
Query: 1311 LIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYS 1370
LIQ FR+VEP+ G I IDGI+I +GLHDLRSR IIPQ+P +FEGT+RSN+DP+ +Y+
Sbjct: 1262 LIQTLFRIVEPAAGEIRIDGINILSIGLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEEYT 1321
Query: 1371 DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDE 1430
D++IW++L+ CQL D V K KLDS V+++G NWSVGQRQL+CLGRV+LK S+LL +DE
Sbjct: 1322 DDQIWEALDNCQLGDEVRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKLLVLDE 1381
Query: 1431 ATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479
ATAS+D+ TD IQ +R FA CT+I+IAHRI +V+D D V+++D GL
Sbjct: 1382 ATASIDTATDNLIQETLRHHFADCTVITIAHRISSVIDSDMVLLLDQGL 1430
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9M1C7|AB9C_ARATH ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1043 bits (2697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/1348 (41%), Positives = 830/1348 (61%), Gaps = 29/1348 (2%)
Query: 146 IAILIVHEKKFEAVTHPLSLRIYWVANFIIVSLFTTSGIIRLVSFETAQFCSLKLDDIVS 205
+++++V ++ V P LR +W+ +FI+ F F TA+ L+ D
Sbjct: 132 VSVVVVKIRERRLVKFPWMLRSWWLCSFILSFSFDAH-------FITAKHEPLEFQDYAD 184
Query: 206 IVSFPLLTVLLFIAIRGSTGIAV---NSDSEPGM--DEKTKLYEPLLSKSDVVSGFASAS 260
+ LL ++IRG TG + + ++EP + D+ + + S S S + +A+
Sbjct: 185 LTGLLASLFLLAVSIRGKTGFHLLESSGNTEPLLLGDQTEQNKKDSYSSS---SPYGNAT 241
Query: 261 ILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFESKWPKPHEKCKHP--- 317
+ + + W+NPL S GYK PL+ D++P + + A S F+ K EK + P
Sbjct: 242 LFQRITFSWINPLFSLGYKRPLEKDDVPDIDVKDSARFCSHAFDQKLKTTKEK-EGPGNA 300
Query: 318 -VRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSS-SFYEGYYLVLIL 375
++LR W++ A A A+V Y+GP LI FV+F S K S S GY L L
Sbjct: 301 FFYNSVLRYVWRKAAINAVFAVVNASTAYIGPYLINDFVEFLSEKQSQSLNHGYLLALGF 360
Query: 376 LVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVD 435
L AK VE + Q+ F +++LG+ +R LI+ +Y+KGL LS +RQ+H G+I+NYM+VD
Sbjct: 361 LTAKIVETVTQRQWIFGARQLGLRLRAALISHIYQKGLVLSSQSRQSHTSGEIINYMSVD 420
Query: 436 AQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGIIGVMIFVVMGTKRNNRF 495
Q+++D + ++ +W++P+QI A+ +L LG + +V + VM T+ +
Sbjct: 421 VQRITDFIWYVNNIWMLPIQIFSAIYILQKHLGLGALAALVTTLMVMACNYPLTRLQRNY 480
Query: 496 QFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNI 555
Q ++M +D RMKAT+E+L M+++K QAW++ F ++ + R+ E+ L K + +
Sbjct: 481 QSDIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRLQAFTT 540
Query: 556 IVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMIS 615
++W P LIS +TF T +L GV L AG+V + F++LQ PI P + +L Q+ +S
Sbjct: 541 FILWGAPSLISVVTFVTCMLMGVKLTAGAVLSALATFQMLQSPIFGLPDLLSALVQSKVS 600
Query: 616 LARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDL 675
R+ Y+ E ++VE ++VE+ +G FSW+ E+ L +I L++K G
Sbjct: 601 ADRIASYLQQSETQKDAVEYCSKDHTELSVEIENGAFSWEPESSRPTLDDIELKVKSGMK 660
Query: 676 TAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMN 735
A+ G VGSGKSSLL+SILGE+ K+ G V+V G AYV Q+ WI +GTI +NILFG
Sbjct: 661 VAVCGAVGSGKSSLLSSILGEIQKLKGTVRVSGKQAYVPQSPWILSGTIRDNILFGSMYE 720
Query: 736 RAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDD 795
KY V+ C L KD E+ GD TEIGERGIN+SGGQKQRIQ+ARAVYQ+ DIYLLDD
Sbjct: 721 SEKYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIARAVYQNADIYLLDD 780
Query: 796 VFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNAL 855
FSAVDAHTG ++F++C+ G LK KT++ VTHQV+FL DLILVM+ G ++Q+G++ L
Sbjct: 781 PFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQNGRVMQAGKFEEL 840
Query: 856 LNSGMDFGALVAAHETSME-LVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSN 914
L + F LV AH +++ ++ + K+ + + I +LQ ++ N
Sbjct: 841 LKQNIGFEVLVGAHNEALDSILSIEKSSRNFKEGSKDDTASIAESLQTHCDSEHNISTEN 900
Query: 915 SDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSY 974
K +KL+++EE E G +G VY Y T G V ++L +Q +A +YW+++
Sbjct: 901 KKK-EAKLVQDEETEKGVIGKEVYLAYLTTVKGGLLVPFIILAQSCFQMLQIASNYWMAW 959
Query: 975 ETSEDHSMSFNPSLFIG----VYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSI 1030
T+ + S P L +G VY A S + ++ R V GL TA+ FFS++L SI
Sbjct: 960 -TAPPTAESI-PKLGMGRILLVYALLAAGSSLCVLARTILVAIGGLSTAETFFSRMLCSI 1017
Query: 1031 LHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTI 1090
APMSFFD+TP+GRIL+RASTDQ+ +DL + +G I ++G + Q AW
Sbjct: 1018 FRAPMSFFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQVAWQVC 1077
Query: 1091 FLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQ 1150
+ IP+A A +Y+ YY T+REL+R+ + +AP++HHF+ES++G TIRAF ++ F
Sbjct: 1078 VIFIPVAVACVFYQRYYTPTARELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFIS 1137
Query: 1151 ENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPENVGLSLS 1210
N+ ++ + R FH + EWL FRL LL F F + + ++ LP +I P GL ++
Sbjct: 1138 SNLVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIAGLGVT 1197
Query: 1211 YGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDL 1270
YGLSLN + I+ C EN+M+SVERI Q+++IPSEA ++ P NWP G++
Sbjct: 1198 YGLSLNVLQATVIWNICNAENKMISVERILQYSKIPSEAPLVIDGHRPLDNWPNVGSIVF 1257
Query: 1271 IDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDG 1330
DLQVRY + P VLK IT GG+KIGVVGRTGSGKSTLIQ FR+VEPS G I+ID
Sbjct: 1258 RDLQVRYAEHFPAVLKNITCEFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSQGTIVIDN 1317
Query: 1331 IDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAK 1390
+DI+ +GLHDLRSR GIIPQ+P LF+GT+R N+DP+ QY+D EIW+++++CQL DV+ AK
Sbjct: 1318 VDITKIGLHDLRSRLGIIPQDPALFDGTIRLNLDPLAQYTDHEIWEAIDKCQLGDVIRAK 1377
Query: 1391 PDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREE 1450
++LD+ V ++G+NWSVGQRQL+CLGRV+LK S +L +DEATASVDS TD IQ+II +E
Sbjct: 1378 DERLDATVVENGENWSVGQRQLVCLGRVLLKKSNILVLDEATASVDSATDGVIQKIINQE 1437
Query: 1451 FAACTIISIAHRIPTVMDCDRVIVVDAG 1478
F T+++IAHRI TV++ D V+V+ G
Sbjct: 1438 FKDRTVVTIAHRIHTVIESDLVLVLSDG 1465
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LK62|AB7C_ARATH ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1033 bits (2671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/1236 (44%), Positives = 780/1236 (63%), Gaps = 17/1236 (1%)
Query: 251 DVVSGFASASILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFESK--WP 308
+VV+ F++A LS + WM+PL+ G + + +++P + RAE++ +F SK W
Sbjct: 227 EVVTPFSNAGFLSHVSFSWMSPLIVLGNEKIIDSEDVPQVDNSDRAEKLFWIFRSKLEWD 286
Query: 309 KPHEK-CKHPVRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYE 367
+ + + L W+++ + A V YV P L+ FV + +G+ +
Sbjct: 287 DGERRITTYKLIKALFFSVWRDILLSTLFAFVYTVSCYVAPYLMDTFVQYLNGQRQYSNQ 346
Query: 368 GYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQ 427
G LV VAK VE + + F QK G+ +R L++ +Y KGL L C ++Q H G+
Sbjct: 347 GVVLVTTFFVAKLVECQARRNWYFRLQKAGIGMRSVLVSMIYEKGLTLPCYSKQGHTSGE 406
Query: 428 IVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGIIGVMIFVVM 487
I+N M VDA+++S +H W++ LQIS+AL++LY LG I VM+ +
Sbjct: 407 IINLMTVDAERISAFSWYMHDPWILVLQISLALLILYRSLGLGSIAAFAATFLVMLGNIP 466
Query: 488 GTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKF 547
K +FQ N+M+++D+RMK T+E L MR++K Q WE F +IL R E GWL KF
Sbjct: 467 LAKLEEKFQGNLMESKDNRMKKTSEALLNMRILKLQGWEMKFLHKILDLRGIEAGWLKKF 526
Query: 548 MYSISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMI 607
+Y+ + V+W+ P +S F +L +PL++G + F+ILQ PI P ++
Sbjct: 527 VYNSAAISSVLWAAPSFVSATAFGACMLLKIPLESGKIIAALATFRILQTPIYKLPDTIS 586
Query: 608 SLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNIN 667
+ Q +SL R+ ++ +L + +ER+ + VEV +G FSWDD + LK+I
Sbjct: 587 MIVQTKVSLDRIATFLCLDDLQQDGMERLPSGSSKMDVEVSNGAFSWDDSSPIPTLKDIR 646
Query: 668 LEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEEN 727
+I G AI GTVGSGKSSLL+SILGE+ KISG +KVCG AY+AQ+ WIQ+G +EEN
Sbjct: 647 FKIPHGMNIAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEEN 706
Query: 728 ILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD 787
ILFG PM R Y V+ C L KDLE+ + DQT IGERGINLSGGQKQRIQ+ARA+YQD
Sbjct: 707 ILFGKPMQREWYQRVLEACSLNKDLEVFPFRDQTVIGERGINLSGGQKQRIQIARALYQD 766
Query: 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIV 847
DIYL DD FSAVDAHTGS +FKE + G L+ KT+I VTHQ++FL DLILVM++G I
Sbjct: 767 ADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRNKTVIYVTHQLEFLPEADLILVMKDGRIT 826
Query: 848 QSGRYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGEN 907
Q+G+YN +L SG DF LV AH ++ V+ + + T K +++ N E
Sbjct: 827 QAGKYNEILESGTDFMELVGAHTDALAAVDSYEKGSASAQSTTSKESKVS------NDEE 880
Query: 908 KSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMA 967
K E S KG +L++EEERE GKVG VY+ Y AYG V +L++ + +Q +
Sbjct: 881 KQEEDLPSPKG--QLVQEEEREKGKVGFTVYQKYMKLAYGGALVPIILVVQILFQVLNIG 938
Query: 968 GDYWLSYET--SEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQ 1025
+YW+++ T S+D + S I VY A S ++VRA G K A F+Q
Sbjct: 939 SNYWMAWVTPVSKDVKPLVSGSTLILVYVFLATASSFCILVRAMLSAMTGFKIATELFNQ 998
Query: 1026 ILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPF-FVGITVAMYITLLGIFIITCQ 1084
+ I A MSFFD TP GRIL+RASTDQ+ +DL LP F + +A + +LGI + Q
Sbjct: 999 MHFRIFRASMSFFDATPIGRILNRASTDQSAVDLRLPSQFSNLAIAA-VNILGIIGVMGQ 1057
Query: 1085 YAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGK 1144
AW + + IP+ A WYR YY+S +REL RL I+++P++ HFSE++SG+ TIR+F +
Sbjct: 1058 VAWQVLIVFIPVIAACTWYRQYYISAARELARLSGISRSPLVQHFSETLSGITTIRSFDQ 1117
Query: 1145 QTTFYQENVNRVNGNL-RMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPE 1203
+ F + ++ R+N R+ FH + EWL FRL+LL + F L+ + ++ +P +I P
Sbjct: 1118 EPRF-RTDIMRLNDCYSRLRFHAISAMEWLCFRLDLLSTVAFALSLVILVSVPEGVINPS 1176
Query: 1204 NVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWP 1263
GL+++Y L+LN + I+ C +EN+M+SVER+ Q+ +IPSE + +E P +WP
Sbjct: 1177 FAGLAVTYALNLNSLQATLIWTLCDLENKMISVERMLQYIDIPSEPSLVIESTRPEKSWP 1236
Query: 1264 AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSG 1323
G + + +LQVRY + P+VL+G+T + GG K G+VGRTG GKSTLIQ FR+VEP+
Sbjct: 1237 CRGEITICNLQVRYGPHLPMVLRGLTCTFRGGLKTGIVGRTGCGKSTLIQTLFRIVEPAA 1296
Query: 1324 GRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQL 1383
G I IDGI+I +GLHDLRSR IIPQEP +FEGTVRSN+DP+ +Y+D++IW++L++CQL
Sbjct: 1297 GEIRIDGINILTIGLHDLRSRLSIIPQEPTMFEGTVRSNLDPLEEYADDQIWEALDKCQL 1356
Query: 1384 KDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI 1443
D + K KLDS V+++G NWSVGQRQL+CLGRV+LK S++L +DEATASVD+ TD I
Sbjct: 1357 GDEIRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKVLILDEATASVDTATDTLI 1416
Query: 1444 QRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479
Q +R+ F+ CT+I+IAHRI +V+D D V+++D GL
Sbjct: 1417 QETLRQHFSGCTVITIAHRISSVIDSDMVLLLDQGL 1452
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8LGU1|AB8C_ARATH ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 999 bits (2582), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/1455 (39%), Positives = 854/1455 (58%), Gaps = 63/1455 (4%)
Query: 39 SPCPQRALLSFVDLLFLLALIVFAVQKLYSKFTASGLSSSDISKPLIRNNRASVRTTLWF 98
S C QR ++FV+LLFL +F L +S +S I R + F
Sbjct: 19 SSCFQRTAIAFVNLLFLCIFYLF-------------LIASCVSTHFIVRGR---KKGWIF 62
Query: 99 KLSLIVTALLALCFTVICI--LTFSGST----QWPWKLVDALFWLVHAITHAVIAILIVH 152
I A+ + F + + L G+ W V+ + W+ A++ L+V+
Sbjct: 63 VAVAICCAITSFIFLGVGLNSLIHGGNDVTEISWVACFVEGIIWVSLAVS------LLVN 116
Query: 153 EKKFEAVTHPLSLRIYWVANFIIVSLFTTSGIIRLVSFETAQFCSLKLDDIVSIVSFPLL 212
K+ + + ++WV+ F ++ L SGI+ Q +++ DI+++ LL
Sbjct: 117 GSKWVNIL----VSVWWVS-FALLDLVAKSGIL-------LQGNGIRILDILTLPMSLLL 164
Query: 213 TVLLFIAIRGSTGIAVNSDSEPGMDEKTKLYEPLLSKS--DVVSGFASASILSKAFWIWM 270
+ ++ +R S+ A + T L +PLL+K+ + A+A S + WM
Sbjct: 165 LLCSWMNLRSSSAAAQDCSV-------TGLSDPLLTKNPRKESARLATAGFFSILSFSWM 217
Query: 271 NPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFESKWP-----KPHEKCKHPVRTTLLRC 325
NPLLS G+K PL ++IPS+ P+ A+ + F W + K ++ V +++
Sbjct: 218 NPLLSLGFKKPLSPEDIPSVVPEDEAQLAYKKFSQAWDTLLGDESSTKERNLVFRAVVKV 277
Query: 326 FWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFS 385
++KE F A A +R + P+++ FVD+ + G++ + L++ K VE +
Sbjct: 278 YFKENIFIAVFAFLRTFAVVSLPLMLYVFVDYANSDHRDLRNGFFNLACLVMLKLVESLT 337
Query: 386 THQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQ 445
+ F S++ GM IR L+ + Y+K L+LS R+ H G+IVNY+AVDA ++ + +
Sbjct: 338 MRHWYFASRRSGMRIRSALMVAAYKKQLKLSSLGRKRHSSGEIVNYIAVDAYRMGEFLWW 397
Query: 446 LHAVWLMPLQISVALILLYNCLGASVITTVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDS 505
H+ W + LQ+ ++ +L+ +GA ++ ++ + + K Q M +D
Sbjct: 398 FHSGWSLSLQLLLSTAVLFGVVGAGAFPGLILLLLCGLLNLPFAKMLQNCQTQFMIAQDK 457
Query: 506 RMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMWSTPVLI 565
R+++T+E+LN M+VIK Q+WED F K+I S R+ EF WL K + + + W +P ++
Sbjct: 458 RLRSTSEILNSMKVIKLQSWEDEFKKKIESCRDDEFTWLAKAQLTKAFGSFLYWMSPTIV 517
Query: 566 STLTF-ATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYML 624
S++ F ALL PL+A ++FT +++ EP++ P ++ ++ Q +S RL+ ++L
Sbjct: 518 SSVVFLGCALLKSAPLNASTIFTVLATLRVMSEPVKIIPDAISAIIQGNVSFQRLNNFLL 577
Query: 625 SRELVNESVERVEGCD-DNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVG 683
EL + +ER G D AV+++ G F W+ E L+NI+LEIK G A+ G VG
Sbjct: 578 DDELKMDEIER-SGLDASGTAVDIQVGNFGWEPETKIPTLRNIHLEIKHGQKVAVCGPVG 636
Query: 684 SGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVV 743
+GKSSLL ++LGE+ K+SG VKV G+ AYV+QTSWIQ+GTI +NIL+G PM +Y +
Sbjct: 637 AGKSSLLHAVLGEIPKVSGTVKVFGSIAYVSQTSWIQSGTIRDNILYGKPMESRRYNAAI 696
Query: 744 RVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAH 803
+ C L+KD+ +GD TEIG+RGINLSGGQKQRIQLARAVY D D+YLLDD FSAVDAH
Sbjct: 697 KACALDKDMNGFGHGDLTEIGQRGINLSGGQKQRIQLARAVYADADVYLLDDPFSAVDAH 756
Query: 804 TGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFG 863
T +F +CV +LK KT+ILVTHQV+FL VD ILVM EG I QSG+Y LL G F
Sbjct: 757 TAGVLFHKCVEDSLKEKTVILVTHQVEFLSEVDQILVMEEGTITQSGKYEELLMMGTAFQ 816
Query: 864 ALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGNSKLI 923
LV AH ++ ++ + G+ K K +I + E E +D +L
Sbjct: 817 QLVNAHNDAVTVLPLASNESLGDLRKEGKDREIRN---MTVVEKIEEEIEKTDIPGVQLT 873
Query: 924 KEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMS 983
+EEE+E+G VG+ + Y + GW + + +L V + A YWL++
Sbjct: 874 QEEEKESGYVGMKPFLDYIGVSRGWCLLWSSVLGQVGFVVFQAASTYWLAFAIGIPK--- 930
Query: 984 FNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPS 1043
++ IGVY + LS + RA H+GLK ++ FFS ++ APM FFD+TP
Sbjct: 931 ITNTMLIGVYSIISTLSAGFVYARAITTAHLGLKASKAFFSGFTNAVFKAPMLFFDSTPV 990
Query: 1044 GRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWY 1103
GRIL+RAS+D +D +PF VA + L +I W I + + A
Sbjct: 991 GRILTRASSDLNVLDYDVPFAFIFVVAPAVELTAALLIMTYVTWQVIIIALLALAATKVV 1050
Query: 1104 RGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMD 1163
+ YYL+++REL R++ TKAPV+++ +E+ GV+TIRAFG F++ +N V+ + +
Sbjct: 1051 QDYYLASARELIRINGTTKAPVMNYAAETSLGVVTIRAFGTAERFFKNYLNLVDADAVLF 1110
Query: 1164 FHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAI 1223
F +N + EW+ R+E L + T L +IL+P I P VGLSLSY L+L +
Sbjct: 1111 FLSNAAMEWVILRIETLQNVTLFTCALLLILIPKGYIAPGLVGLSLSYALTLTQTQVFLT 1170
Query: 1224 YMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPL 1283
C + N ++SVERIKQ+ IP E ++D+ PP +WP++G + L +L++RYR N PL
Sbjct: 1171 RWYCTLSNSIISVERIKQYMNIPEEPPAIIDDKRPPSSWPSNGTIHLQELKIRYRPNAPL 1230
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
VLKGI+ + G ++GVVGRTGSGKSTLI FRLVEP+ G I+IDGIDIS +GL DLR
Sbjct: 1231 VLKGISCTFREGTRVGVVGRTGSGKSTLISALFRLVEPASGCILIDGIDISKIGLKDLRM 1290
Query: 1344 RFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGD 1403
+ IIPQEP LF G +R+N+DP+G YSD+EIWK+LE+CQLK ++ P+KLDS V+D G+
Sbjct: 1291 KLSIIPQEPTLFRGCIRTNLDPLGVYSDDEIWKALEKCQLKTTISNLPNKLDSSVSDEGE 1350
Query: 1404 NWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRI 1463
NWSVGQRQL CLGRV+LK +++L +DEATAS+DS TDA IQRIIREEFA CT+I++AHR+
Sbjct: 1351 NWSVGQRQLFCLGRVLLKRNKILVLDEATASIDSATDAIIQRIIREEFADCTVITVAHRV 1410
Query: 1464 PTVMDCDRVIVVDAG 1478
PTV+D D V+V+ G
Sbjct: 1411 PTVIDSDMVMVLSFG 1425
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LYS2|AB10C_ARATH ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 969 bits (2505), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/1261 (40%), Positives = 759/1261 (60%), Gaps = 43/1261 (3%)
Query: 239 KTKLYEPLLS--------KSDV---VSGFASASILSK-AFWIWMNPLLSKGYKSPLKIDE 286
++ LYEPL + K+D VS FA A + S +FW W+N L+ +G L+ ++
Sbjct: 179 ESSLYEPLNAGDSNGFSEKADFDNRVSQFAKAGLFSTLSFW-WLNSLIKRGNVKDLEEED 237
Query: 287 IPSLSPQHRAERMSELFESKWPKPHEK----CKHPVRTTLLRCFWKEVAFTAFLAIVRLC 342
IP L + RAE LFE + + C+ + + C W+E+ + F A +++
Sbjct: 238 IPELRKEERAETCYSLFEENLIEQKRRLGSSCQPSILKVTVLCVWRELLTSGFFAFMKIV 297
Query: 343 VMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRC 402
+ GP+L+ F+ G +S YEG L ++L +K +E S Q+ F + +G+ +R
Sbjct: 298 AVSAGPLLLNAFILVAEGNASFRYEGLVLAVLLFFSKMIESLSQRQWYFRCRIVGLRVRS 357
Query: 403 TLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALIL 462
L ++ +K LRL+ S+R H +I+NY VDA ++ + H +W Q+ +AL +
Sbjct: 358 LLTAAINKKQLRLNNSSRLIHSGSEIMNYATVDAYRIGEFPYWFHQLWTTSFQLLIALGI 417
Query: 463 LYNCLGASVITTVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKF 522
L++ +G + + + II ++ K N+FQ +M ++D R+KA NE L M+V+K
Sbjct: 418 LFHSVGVATFSALAVIILTVLCNAPIAKLQNKFQSELMTSQDERLKACNESLVNMKVLKL 477
Query: 523 QAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMWSTPVLISTLTFATALLFGVPLDA 582
AWE HF K I R E L + N ++ WS+PV +S TFAT +PL A
Sbjct: 478 YAWESHFKKVIEKLRNIELKSLKAVQMRKAYNAVLFWSSPVFVSAATFATCYFLDIPLRA 537
Query: 583 GSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDN 642
+VFT +++Q+P+R P + QA ++ +R+ ++ + EL R + + N
Sbjct: 538 SNVFTFVATLRLVQDPVRMIPDVIGVTIQAKVAFSRIATFLEAPELQGGERRRKQRSEGN 597
Query: 643 I-AVEVRDGVFSWDDENG-EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI 700
A+ ++ FSW+++ + L+N++LE+K G+ A+ G VGSGKS+LLA+ILGE +
Sbjct: 598 QNAIIIKSASFSWEEKGSTKPNLRNVSLEVKFGEKVAVCGEVGSGKSTLLAAILGETPCV 657
Query: 701 SGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQ 760
SG + GT AYV+QT+WIQ GTI +NILFG M+ +Y E ++ L+KDLE++ GDQ
Sbjct: 658 SGTIDFYGTIAYVSQTAWIQTGTIRDNILFGGVMDEHRYRETIQKSSLDKDLELLPDGDQ 717
Query: 761 TEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGK 820
TEIGERG+NLSGGQKQRIQLARA+YQD DIYLLDD FSAVDAHT S +F+E V AL GK
Sbjct: 718 TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFQEYVMDALAGK 777
Query: 821 TIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVEVGK 880
++LVTHQVDFL D +L+M +G I ++ Y LL DF LV AH
Sbjct: 778 AVLLVTHQVDFLPAFDSVLLMSDGEITEADTYQELLARSRDFQDLVNAHR---------- 827
Query: 881 TMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKI 940
+ S + T ++E N + + + S+LIK+EERE G GL Y
Sbjct: 828 --ETAGSERVVAVENPTKPVKEIN---RVISSQSKVLKPSRLIKQEEREKGDTGLRPYIQ 882
Query: 941 YCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLS 1000
Y + G+ L V + + + W++ + I VY + S
Sbjct: 883 YMNQNKGYIFFFIASLAQVTFAVGQILQNSWMAANVDNPQVSTLK---LILVYLLIGLCS 939
Query: 1001 MVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLF 1060
++ L+VR+ V + +K++ FSQ+L S+ APMSF+D+TP GRILSR S+D + +DL
Sbjct: 940 VLCLMVRSVCVVIMCMKSSASLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLD 999
Query: 1061 LPFFVGITVAMYITL---LGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRL 1117
+PF + VA + LG+ I W +F+ +P+ + + + YY T++EL R+
Sbjct: 1000 VPFGLIFVVASSVNTGCSLGVLAIV---TWQVLFVSVPMVYLAFRLQKYYFQTAKELMRI 1056
Query: 1118 DSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRL 1177
+ T++ V +H +ES++G +TIRAF ++ F+++++ ++ N FH+ +NEWL RL
Sbjct: 1057 NGTTRSYVANHLAESVAGAITIRAFDEEERFFKKSLTLIDTNASPFFHSFAANEWLIQRL 1116
Query: 1178 ELLGSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVE 1237
E + + MILLP+ +G++LSYGLSLN L +++ C++ N ++SVE
Sbjct: 1117 ETVSAIVLASTAFCMILLPTGTFSSGFIGMALSYGLSLNMGLVYSVQNQCYLANWIISVE 1176
Query: 1238 RIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEK 1297
R+ Q+T + EA +E+ PP NWP G V++ DLQ+RYR +PLVLKGI+ + GG K
Sbjct: 1177 RLNQYTHLTPEAPEVIEETRPPVNWPVTGRVEISDLQIRYRRESPLVLKGISCTFEGGHK 1236
Query: 1298 IGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEG 1357
IG+VGRTGSGK+TLI FRLVEP GG+I++DG+DIS +G+HDLRSRFGIIPQ+P LF G
Sbjct: 1237 IGIVGRTGSGKTTLISALFRLVEPVGGKIVVDGVDISKIGVHDLRSRFGIIPQDPTLFNG 1296
Query: 1358 TVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGR 1417
TVR N+DP+ Q+SD EIW+ L +CQLK+VV K + LDSLV + G NWS+GQRQL CLGR
Sbjct: 1297 TVRFNLDPLCQHSDAEIWEVLGKCQLKEVVQEKENGLDSLVVEDGSNWSMGQRQLFCLGR 1356
Query: 1418 VMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDA 1477
+L+ SR+L +DEATAS+D+ TD +Q+ IR EFA CT+I++AHRIPTVMDC V+ +
Sbjct: 1357 AVLRRSRVLVLDEATASIDNATDLILQKTIRREFADCTVITVAHRIPTVMDCTMVLSISD 1416
Query: 1478 G 1478
G
Sbjct: 1417 G 1417
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7FB56|AB15C_ARATH Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 899 bits (2323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/1051 (44%), Positives = 658/1051 (62%), Gaps = 43/1051 (4%)
Query: 432 MAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGIIGVMIFVVMGTKR 491
M+VD Q+++D + ++++W++P+QI A+ +L LG + +V + VM T+
Sbjct: 1 MSVDVQRITDFIWYVNSIWMLPIQIFSAIYILQKHLGLGALAALVTTLMVMACNYPLTRL 60
Query: 492 NNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSI 551
+Q ++M +D RMKAT+E+L M+++K QAW++ F ++ + R+ E+ L K +
Sbjct: 61 QRNYQSDIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRLQ 120
Query: 552 SGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQ 611
++W P LIS +TF T +L GV L AG+V + F++LQ PI P + +L Q
Sbjct: 121 DFTTFILWGAPSLISVVTFVTCMLMGVKLTAGAVLSALATFQMLQSPIFGLPDLLSALVQ 180
Query: 612 AMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIK 671
+ +S R+ Y+ E ++VE +VE+ +G FSW+ E+ L +I L++K
Sbjct: 181 SKVSADRIASYLQQSETQKDAVEYCSNDHTEFSVEIENGAFSWEPESSRPTLDDIELKVK 240
Query: 672 KGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILFG 731
G AI G VGSGKSSL +SILGE+ K+ G V+V G AYV Q+ WI +GTI +NILFG
Sbjct: 241 SGMKVAICGAVGSGKSSLPSSILGEIQKLKGTVRVSGKQAYVPQSPWILSGTIRDNILFG 300
Query: 732 LPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIY 791
KY V+ C L KD E+ GD TEIGERGIN+SGGQKQRIQ+ARAVYQ+ DIY
Sbjct: 301 SIYESEKYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIARAVYQNADIY 360
Query: 792 LLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGR 851
LLDD FSAVDAHTG ++F++C+ G LK KT++ VTHQV+FL DLILVM+ G ++Q+G+
Sbjct: 361 LLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQNGRVMQAGK 420
Query: 852 YNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVE 911
+ LL + F L + ENK
Sbjct: 421 FEELLKQNIGFEVLTQCDSE-----------------------------HNISTENK--- 448
Query: 912 QSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYW 971
K +KL+++EE E G +G VY Y T G V ++L +Q +A +YW
Sbjct: 449 -----KKEAKLVQDEETEKGVIGKEVYLTYLTTVKGGLLVPFIILAQSCFQMLQIASNYW 503
Query: 972 LSYETSEDHSMSFNPSLFIG----VYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQIL 1027
+++ T+ + S P L +G VY A S + ++ R V GL TA+ FFS++L
Sbjct: 504 MAW-TAPPTAESI-PKLGMGRILLVYALLAAGSSLCVLARTILVAIGGLSTAETFFSRML 561
Query: 1028 RSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAW 1087
SI APMS+FD+TP+GRIL+RASTDQ+ +DL + +G I ++G + Q AW
Sbjct: 562 CSIFRAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQVAW 621
Query: 1088 PTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTT 1147
+ IP+A A +Y+ YY T REL+R+ + +AP++HHF+ES++G TIRAF ++
Sbjct: 622 QVCVIFIPVAVACVFYQRYYTPTERELSRMSGVERAPILHHFAESLAGATTIRAFDQRDR 681
Query: 1148 FYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPENVGL 1207
F N+ ++ + R FH + EWL FRL LL F F + + ++ LP +I P GL
Sbjct: 682 FISSNLVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIAGL 741
Query: 1208 SLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGN 1267
++YGLSLN + I+ C EN+M+SVERI Q ++IPSEA ++D+ P NWP G+
Sbjct: 742 GVTYGLSLNVLQATVIWNICNAENKMISVERILQHSKIPSEAPLVIDDQRPLDNWPNVGS 801
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+ DLQVRY + P VLK IT + GG+KIGVVGRTGSGKSTLIQ FR+VEPS G I+
Sbjct: 802 IVFRDLQVRYAEHFPAVLKNITCAFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSHGTIV 861
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVV 1387
ID +DI+ +GLHDLRSR GIIPQ+ LF+GT+R N+DP+ QY+D EIW++L++CQL DV+
Sbjct: 862 IDNVDITKIGLHDLRSRLGIIPQDNALFDGTIRLNLDPLAQYTDREIWEALDKCQLGDVI 921
Query: 1388 AAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII 1447
AK +KLD+ V ++G+NWSVGQRQL+CLGRV+LK S +L +DEATASVDS TD IQ+II
Sbjct: 922 RAKDEKLDATVVENGENWSVGQRQLVCLGRVLLKKSNILVLDEATASVDSATDGVIQKII 981
Query: 1448 REEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
+EF T+++IAHRI TV++ D V+V+ G
Sbjct: 982 NQEFKDRTVVTIAHRIHTVIESDLVLVLSDG 1012
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1479 | ||||||
| 255564132 | 1506 | multidrug resistance-associated protein | 0.991 | 0.974 | 0.799 | 0.0 | |
| 225437336 | 1509 | PREDICTED: ABC transporter C family memb | 0.997 | 0.978 | 0.803 | 0.0 | |
| 224064438 | 1508 | multidrug resistance protein ABC transpo | 0.994 | 0.975 | 0.779 | 0.0 | |
| 224131142 | 1507 | multidrug resistance protein ABC transpo | 0.981 | 0.962 | 0.774 | 0.0 | |
| 356536723 | 1501 | PREDICTED: ABC transporter C family memb | 0.989 | 0.975 | 0.758 | 0.0 | |
| 449469090 | 1507 | PREDICTED: ABC transporter C family memb | 0.996 | 0.978 | 0.735 | 0.0 | |
| 357442537 | 1515 | ABC transporter C family protein [Medica | 0.993 | 0.969 | 0.741 | 0.0 | |
| 297821178 | 1546 | ATMRP10 [Arabidopsis lyrata subsp. lyrat | 0.993 | 0.950 | 0.699 | 0.0 | |
| 15227133 | 1516 | ABC transporter C family member 4 [Arabi | 0.990 | 0.966 | 0.710 | 0.0 | |
| 15228832 | 1539 | ABC transporter C family member 14 [Arab | 0.975 | 0.937 | 0.704 | 0.0 |
| >gi|255564132|ref|XP_002523063.1| multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis] gi|223537625|gb|EEF39248.1| multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2422 bits (6277), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1178/1474 (79%), Positives = 1323/1474 (89%), Gaps = 7/1474 (0%)
Query: 7 WITSLSCSSSVVQSSEDTSVSLILHWLRFIFLSPCPQRALLSFVDLLFLLALIVFAVQKL 66
WITSLSCSSSV+QS DTS L+ WLRF+FLSPCPQRALLS VDLLFLL L+VF +QKL
Sbjct: 6 WITSLSCSSSVIQSDGDTSFPLLFQWLRFVFLSPCPQRALLSSVDLLFLLVLLVFVLQKL 65
Query: 67 YSKFTASGLSSSDISKPLIRNNRASVRTTLWFKLSLIVTALLALCFTVICILTF-SGSTQ 125
+S+F++SG S SDI KPLI N+R +RTT+WFKLSLIVT L +T + IL F S ST+
Sbjct: 66 FSRFSSSGHSKSDIDKPLIGNSRVLIRTTIWFKLSLIVTVFLTFGYTAVSILAFISESTE 125
Query: 126 WPWKLVDALFWLVHAITHAVIAILIVHEKKFEAVTHPLSLRIYWVANFIIVSLFTTSGII 185
PWK+VD FWLV AITHAVI+ILI+HEK+FEAVTHPLSLRIYWVANFI+++LF +SGII
Sbjct: 126 LPWKIVDGSFWLVQAITHAVISILIIHEKRFEAVTHPLSLRIYWVANFIVITLFMSSGII 185
Query: 186 RLVSFETAQFCSLKLDDIVSIVSFPLLTVLLFIAIRGSTGIAVNSDSEPGMDEKTKLYEP 245
RLV AQ + LDDI+SIVSFPL VLL +AIRGSTGI V +SEP +D++TKL++
Sbjct: 186 RLV----AQQNIMVLDDIISIVSFPLSIVLLSVAIRGSTGITVTRESEPVIDDETKLHDS 241
Query: 246 -LLSKSDVVSGFASASILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFE 304
LSK +V SGFASAS +SKAFW+WMNPLLSKGYKSPLKIDE+P+LSP+HRAERMS+LF
Sbjct: 242 DSLSKGNV-SGFASASRVSKAFWLWMNPLLSKGYKSPLKIDEVPTLSPEHRAERMSQLFA 300
Query: 305 SKWPKPHEKCKHPVRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSS 364
+KWPKPHEK KHPVRTTLLRCFWKE+AFTAFLAI+RLCVMYVGP+LIQ FVD+TSGK +S
Sbjct: 301 AKWPKPHEKSKHPVRTTLLRCFWKEIAFTAFLAIMRLCVMYVGPLLIQSFVDYTSGKRTS 360
Query: 365 FYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHG 424
YEGYYLVLILLVAKF EV HQFNFNSQKLGMLIR TLITSLYRKGLRLSCSARQ+HG
Sbjct: 361 PYEGYYLVLILLVAKFFEVLIVHQFNFNSQKLGMLIRSTLITSLYRKGLRLSCSARQSHG 420
Query: 425 VGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGIIGVMIF 484
VGQIVNYMAVDAQQLSDMMLQLHA+WLMPLQ++VAL+LLYN LG SVI ++GI VM+F
Sbjct: 421 VGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQVTVALVLLYNALGVSVIAALIGIACVMVF 480
Query: 485 VVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWL 544
+ GT+RNNRFQ N+M NRDSRMKATNEMLNYMRVIKFQAWE+HFNKRI +FRESEF WL
Sbjct: 481 ALYGTRRNNRFQKNLMMNRDSRMKATNEMLNYMRVIKFQAWEEHFNKRIQNFRESEFEWL 540
Query: 545 TKFMYSISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQ 604
+KFMYS+SGNIIVMW TP+LIST+TF TALLFGVPLDAG+VFTTT+IFKILQ+PIR+FPQ
Sbjct: 541 SKFMYSVSGNIIVMWCTPLLISTVTFGTALLFGVPLDAGTVFTTTSIFKILQDPIRSFPQ 600
Query: 605 SMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLK 664
SMIS SQAMISL RLD+YMLS+ELV +SVERV+GCD IAVE++DG FSWDDE+ +E LK
Sbjct: 601 SMISFSQAMISLERLDRYMLSKELVEQSVERVDGCDGRIAVEIKDGSFSWDDESEDEVLK 660
Query: 665 NINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTI 724
NIN EIKKG+LTAIVGTVGSGKSSLLAS+LGEMHKISGKV+VCGTTAYVAQTSWIQNGTI
Sbjct: 661 NINFEIKKGELTAIVGTVGSGKSSLLASVLGEMHKISGKVRVCGTTAYVAQTSWIQNGTI 720
Query: 725 EENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAV 784
+ENILFGLPM+R KY EV+RVCCLEKDLEMM+YGDQTEIGERGINLSGGQKQRIQLARAV
Sbjct: 721 QENILFGLPMDREKYNEVIRVCCLEKDLEMMDYGDQTEIGERGINLSGGQKQRIQLARAV 780
Query: 785 YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREG 844
YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTI+LVTHQVDFLHN+DLI+VMR+G
Sbjct: 781 YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTILLVTHQVDFLHNIDLIMVMRDG 840
Query: 845 MIVQSGRYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEAN 904
MIVQSG+YN L+ SGMDFGALVAAH+T+MELVE G +P NSP+ PKSPQ +SN EAN
Sbjct: 841 MIVQSGKYNNLVKSGMDFGALVAAHDTAMELVEAGTAVPGENSPRPPKSPQSSSNALEAN 900
Query: 905 GENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGS 964
GENK ++Q S+KG SKL++EEERETGKVGLHVYK YCT A+GWWGV LLLS+ WQ S
Sbjct: 901 GENKHLDQPKSEKGTSKLVEEEERETGKVGLHVYKQYCTAAFGWWGVTVALLLSIVWQAS 960
Query: 965 LMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFS 1024
LMA DYWL+YETSE+ + F+PSLFI VY S+V+L +RA FV +GLKTAQIFF
Sbjct: 961 LMAADYWLAYETSEERASIFDPSLFISVYAVITAASLVLLTMRALFVNLMGLKTAQIFFM 1020
Query: 1025 QILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQ 1084
IL SILHAPMSFFDTTPSGRILSRAS DQ+N+DLF+PF +G+TVAMYITLL I IITCQ
Sbjct: 1021 GILHSILHAPMSFFDTTPSGRILSRASADQSNVDLFIPFVLGLTVAMYITLLSIIIITCQ 1080
Query: 1085 YAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGK 1144
YAWPT+FL++PL W N WYRGY+LSTSRELTRLDSITKAP+IHHFSESISGV+TIR+F K
Sbjct: 1081 YAWPTVFLLVPLGWLNIWYRGYFLSTSRELTRLDSITKAPIIHHFSESISGVLTIRSFRK 1140
Query: 1145 QTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEN 1204
F QENVNRV+ NLRMDFHNNGSNEWLGFRLEL+GSF C++ +F+I+LPSSII+PEN
Sbjct: 1141 LERFSQENVNRVDANLRMDFHNNGSNEWLGFRLELMGSFILCMSAMFLIVLPSSIIRPEN 1200
Query: 1205 VGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPA 1264
VGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFT IPSEAAWK++DR+PPP+WPA
Sbjct: 1201 VGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTNIPSEAAWKIKDRIPPPSWPA 1260
Query: 1265 HGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGG 1324
GNVDL DLQV+YR NTPLVLKGITLSI+GGEKIGVVGRTGSGKSTLIQVFFRLVEP+GG
Sbjct: 1261 QGNVDLKDLQVKYRPNTPLVLKGITLSIYGGEKIGVVGRTGSGKSTLIQVFFRLVEPTGG 1320
Query: 1325 RIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLK 1384
+IIIDGIDI +LGL DLRSRFGIIPQEPVLFEGTVRSNIDPIGQY+DE+IWKSLERCQLK
Sbjct: 1321 KIIIDGIDICMLGLQDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYTDEQIWKSLERCQLK 1380
Query: 1385 DVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 1444
DVVAAKP+KLD+LVAD+GDNWSVGQRQLLCLGRVMLK SRLLFMDEATASVDSQTD IQ
Sbjct: 1381 DVVAAKPEKLDALVADNGDNWSVGQRQLLCLGRVMLKRSRLLFMDEATASVDSQTDGVIQ 1440
Query: 1445 RIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
+IIRE+FAACTIISIAHRIPTVMDCDRV+V+DAG
Sbjct: 1441 KIIREDFAACTIISIAHRIPTVMDCDRVLVIDAG 1474
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437336|ref|XP_002265012.1| PREDICTED: ABC transporter C family member 4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2407 bits (6239), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1189/1479 (80%), Positives = 1322/1479 (89%), Gaps = 3/1479 (0%)
Query: 1 MSSASGWITSLSCSSSVVQSSEDTSVSLILHWLRFIFLSPCPQRALLSFVDLLFLLALIV 60
MSSAS WIT+LSCSSSV+ SS +T SLIL WLRFIFLSPCPQRALLS +DLLFLL LI
Sbjct: 1 MSSAS-WITTLSCSSSVIASSGETPFSLILQWLRFIFLSPCPQRALLSSIDLLFLLTLIA 59
Query: 61 FAVQKLYSKFTASGLSSSDISKPLIRNNRASVRTTLWFKLSLIVTALLALCFTVICILTF 120
F+VQKLYS+F ++G SSS I+KPLIRNNRA +RTTLWFKL+L TALLA+C +CIL F
Sbjct: 60 FSVQKLYSRFISNGRSSSAINKPLIRNNRARLRTTLWFKLTLTATALLAVCHGFLCILAF 119
Query: 121 SGSTQWPWKLVDALFWLVHAITHAVIAILIVHEKKFEAVTHPLSLRIYWVANFIIVSLFT 180
+ Q PWKL+DALFWLV AITH +I ILI H K+F+AVT+PLSLRI+WV +FII SLFT
Sbjct: 120 ARGAQMPWKLIDALFWLVEAITHFLITILIAHGKRFQAVTYPLSLRIFWVVSFIISSLFT 179
Query: 181 TSGIIRLVSFETAQFCSLKLDDIVSIVSFPLLTVLLFIAIRGSTGIAVNSDSEPGMDEKT 240
TSGIIR+ E + +L+LDDIV++V+FPL VLL + IRGSTGI V+ +SEP MD +
Sbjct: 180 TSGIIRIFFVEGFEASNLRLDDIVTLVTFPLSVVLLLVGIRGSTGITVDRESEPVMDVEE 239
Query: 241 KLYEPLLSKSDVVSGFASASILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERMS 300
KLYEPLL KS+V +GFASASILSKA W+WMNPLL KGYKSPLKIDEIPSLSP+HRAERMS
Sbjct: 240 KLYEPLLGKSNV-TGFASASILSKALWLWMNPLLGKGYKSPLKIDEIPSLSPEHRAERMS 298
Query: 301 ELFESKWPKPHEKCKHPVRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSG 360
ELFES WPKPHEK HPVRTTL RCFW+EVAFTAFLAIVRLCV+YVGP+LIQRFVDFTSG
Sbjct: 299 ELFESNWPKPHEKLNHPVRTTLFRCFWREVAFTAFLAIVRLCVIYVGPLLIQRFVDFTSG 358
Query: 361 KSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSAR 420
K SS YEGYYLVLILL+AK VEV ++H FNFNSQKLGMLIR TLITSLYRKGLRLSCSAR
Sbjct: 359 KRSSPYEGYYLVLILLIAKTVEVLTSHHFNFNSQKLGMLIRSTLITSLYRKGLRLSCSAR 418
Query: 421 QAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGIIG 480
Q HGVGQIVNYMAVDAQQLSDMMLQLHA+WLMPLQ++VAL+LLYN LG ++IT V+GI
Sbjct: 419 QDHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQVTVALVLLYNELGGAMITAVIGIFA 478
Query: 481 VMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESE 540
V++FV+MGT+RNNRFQ NVMKNRD RMKATNEMLNYMRVIKFQAWE+HFNKRI SFRESE
Sbjct: 479 VLLFVLMGTRRNNRFQHNVMKNRDLRMKATNEMLNYMRVIKFQAWEEHFNKRIQSFRESE 538
Query: 541 FGWLTKFMYSISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIR 600
FGWLTKFMYSISGNIIVMWSTP++IS TFATA++ GV LDAG+VFTTT+IFKILQEPIR
Sbjct: 539 FGWLTKFMYSISGNIIVMWSTPLMISAFTFATAIMLGVQLDAGTVFTTTSIFKILQEPIR 598
Query: 601 NFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGE 660
FPQSMIS+SQAMISLARLDKYM SRELV SVER E CD IAVEV+DGVFSWDDE E
Sbjct: 599 AFPQSMISISQAMISLARLDKYMTSRELVESSVEREESCDGRIAVEVKDGVFSWDDEGKE 658
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ 720
E L+N+N EIKKG+L AIVGTVGSGKSSLLAS+LGEMHKISG+V++CGTTAYVAQTSWIQ
Sbjct: 659 EVLRNLNFEIKKGELAAIVGTVGSGKSSLLASVLGEMHKISGQVRLCGTTAYVAQTSWIQ 718
Query: 721 NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQL 780
NGTI+ENILFGLPMN KY EV+RVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQL
Sbjct: 719 NGTIQENILFGLPMNTEKYREVIRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQL 778
Query: 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILV 840
ARAVYQDCD+YLLDDVFSAVDAHTG+DIFKECVRGAL+ KTI+LVTHQVDFLHNVDLILV
Sbjct: 779 ARAVYQDCDVYLLDDVFSAVDAHTGTDIFKECVRGALRNKTILLVTHQVDFLHNVDLILV 838
Query: 841 MREGMIVQSGRYNALLNSGMDFGALVAAHETSMELV-EVGKTMPSGNSPKTPKSPQITSN 899
MR+GMIVQSG+YN LL SGMDF ALVAAHETSMELV E G + S NSPK P+SPQ SN
Sbjct: 839 MRDGMIVQSGKYNDLLESGMDFKALVAAHETSMELVEEAGPAITSENSPKLPQSPQPFSN 898
Query: 900 LQEANGENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSV 959
EANG +KS +QS S+K +SKLIK+EERETGKV VYK YCTEAYGW G+ VLLLS+
Sbjct: 899 HGEANGVDKSGDQSKSNKESSKLIKDEERETGKVSFQVYKQYCTEAYGWSGLAGVLLLSL 958
Query: 960 AWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTA 1019
AWQGSLMA DYWL+YETSE H+ SFN SLFI Y A +S++++V+R++ VT +GLKTA
Sbjct: 959 AWQGSLMASDYWLAYETSEKHAKSFNASLFITNYSIIAAVSVLLIVIRSFTVTKLGLKTA 1018
Query: 1020 QIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIF 1079
QIFFSQIL SILHAPMSFFDTTPSGRILSRASTDQTN+DLF+PFF+ +T+AMYITLL I
Sbjct: 1019 QIFFSQILHSILHAPMSFFDTTPSGRILSRASTDQTNVDLFVPFFMAVTLAMYITLLSII 1078
Query: 1080 IITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTI 1139
IITCQYAWPTIFL+IPL W N WYRGY++++SRE+TRLDSITKAPVIHHFSESISGV TI
Sbjct: 1079 IITCQYAWPTIFLLIPLGWLNVWYRGYFIASSREITRLDSITKAPVIHHFSESISGVTTI 1138
Query: 1140 RAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSI 1199
R F KQ F QENV+RV+ NLRMDFHNNGSNEWLGFRLEL+GSF CL+T+FMILLPSSI
Sbjct: 1139 RCFRKQIGFTQENVHRVDKNLRMDFHNNGSNEWLGFRLELIGSFIMCLSTMFMILLPSSI 1198
Query: 1200 IKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPP 1259
IKPENVGLSLSYGLSLN VLFWAIYMSCFVEN+MVSVERIKQFT IPSEAAW+++DRLPP
Sbjct: 1199 IKPENVGLSLSYGLSLNSVLFWAIYMSCFVENKMVSVERIKQFTNIPSEAAWQIKDRLPP 1258
Query: 1260 PNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLV 1319
PNWP HGNV+L DLQVRYR N+PLVLKGITL+I G EKIGVVGRTGSGKSTL+QVFFRLV
Sbjct: 1259 PNWPTHGNVELKDLQVRYRPNSPLVLKGITLNIRGKEKIGVVGRTGSGKSTLVQVFFRLV 1318
Query: 1320 EPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLE 1379
EPSGG+IIIDGIDI +LGLHDLRSRFGIIPQEPVLFEGTVRSN+DP+GQYSDEEIW+SLE
Sbjct: 1319 EPSGGKIIIDGIDIGMLGLHDLRSRFGIIPQEPVLFEGTVRSNVDPVGQYSDEEIWQSLE 1378
Query: 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
CQLK+VVA KPDKLDSLV D+GDNWSVGQRQLLCLGRVMLK SR+LF+DEATASVDSQT
Sbjct: 1379 HCQLKEVVAGKPDKLDSLVVDNGDNWSVGQRQLLCLGRVMLKRSRILFLDEATASVDSQT 1438
Query: 1440 DAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
DA IQRIIRE+FA CTIISIAHRIPTVMDCDRV+V+DAG
Sbjct: 1439 DAVIQRIIREDFANCTIISIAHRIPTVMDCDRVLVIDAG 1477
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064438|ref|XP_002301476.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222843202|gb|EEE80749.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2341 bits (6066), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1154/1480 (77%), Positives = 1304/1480 (88%), Gaps = 9/1480 (0%)
Query: 3 SASGWITSLSCSSSVVQSSEDTSVSLILHWLRFIFLSPCPQRALLSFVDLLFLLALIVFA 62
S S WITSLSCSSSVV S DTS+ +I WLRFIF SPCPQRALLS VDLLFLLAL+ FA
Sbjct: 2 SYSTWITSLSCSSSVVLPSGDTSIPMIFQWLRFIFFSPCPQRALLSSVDLLFLLALLGFA 61
Query: 63 VQKLYSKFTASGLSSSDISKPLIRNNRASV---RTTLWFKLSLIVTALLALCFTVICILT 119
QKLYS+FT+SG S SDI+KPLI N + V T++WFKLSLIV+ LLALC+ + IL
Sbjct: 62 AQKLYSRFTSSGRSISDINKPLIGNGNSRVLQITTSIWFKLSLIVSVLLALCYIAVSILA 121
Query: 120 FSGSTQWP-WKLVDALFWLVHAITHAVIAILIVHEKKFEAVTHPLSLRIYWVANFIIVSL 178
FS S++ P W ++D +FWLV AITHAVIAILI+HEK+F+A THPLSLRIYWVANFI L
Sbjct: 122 FSQSSRLPYWNVLDGVFWLVQAITHAVIAILIIHEKRFQATTHPLSLRIYWVANFITTGL 181
Query: 179 FTTSGIIRLVSFETAQFCSLKLDDIVSIVSFPLLTVLLFIAIRGSTGIAVNSDSEPGMDE 238
F SGIIRLV+ + +L DDI S+V+F VL +AIRGSTGI V +SE M +
Sbjct: 182 FMLSGIIRLVALDH----NLIFDDIFSVVAFTFSIVLFAVAIRGSTGITVIRESEAVMHD 237
Query: 239 KTKLYEPLLSKSDVVSGFASASILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAER 298
TKL EPLL KS+V +GFA+ASI+SK W+WMNPLL KGYKSPLKID++P+LS Q RAE+
Sbjct: 238 DTKLQEPLLEKSNV-TGFATASIISKCLWLWMNPLLRKGYKSPLKIDDVPTLSLQDRAEK 296
Query: 299 MSELFESKWPKPHEKCKHPVRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFT 358
MS+L+ESKWPKPHEK +PVRTTLLRCFWKE+AFTAFLAI+RLCVMYVGP+LIQ FVD+T
Sbjct: 297 MSQLYESKWPKPHEKSNNPVRTTLLRCFWKEIAFTAFLAILRLCVMYVGPMLIQSFVDYT 356
Query: 359 SGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCS 418
+GK +S +EGYYLVL LLVAKFVEV + HQFNFNSQKLGMLIRC+LITSLY+KGLRLSCS
Sbjct: 357 AGKRTSPFEGYYLVLTLLVAKFVEVLTVHQFNFNSQKLGMLIRCSLITSLYKKGLRLSCS 416
Query: 419 ARQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGI 478
ARQAHGVGQIVNYMAVDAQQLSDMMLQLH++WLMPLQ+ V L+LLYN LGAS IT +GI
Sbjct: 417 ARQAHGVGQIVNYMAVDAQQLSDMMLQLHSIWLMPLQLGVGLVLLYNVLGASTITAFLGI 476
Query: 479 IGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRE 538
+ V++F + GTKRNNRFQ NVM NRDSRMKATNEMLNYMRVIKFQAWE+HFNKRI +FRE
Sbjct: 477 LSVILFAIFGTKRNNRFQRNVMVNRDSRMKATNEMLNYMRVIKFQAWEEHFNKRIQNFRE 536
Query: 539 SEFGWLTKFMYSISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEP 598
SEFGW++KF+YSISGNIIVMWS P+L+STLTF TALL GVPLDAG+VFTTT++FKILQEP
Sbjct: 537 SEFGWISKFLYSISGNIIVMWSAPLLVSTLTFGTALLLGVPLDAGTVFTTTSVFKILQEP 596
Query: 599 IRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDEN 658
IR FPQSMISLSQAM+SL+RLD+YM+S+ELV ESVERV+GCDD IAV+++DGVFSWDDE
Sbjct: 597 IRTFPQSMISLSQAMVSLSRLDRYMISKELVEESVERVDGCDDRIAVQIKDGVFSWDDET 656
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW 718
++ LKNINLEIKKG+LTAIVGTVGSGKSSLLASILGEMHKISGKV+VCGTTAYVAQTSW
Sbjct: 657 EDDVLKNINLEIKKGELTAIVGTVGSGKSSLLASILGEMHKISGKVRVCGTTAYVAQTSW 716
Query: 719 IQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRI 778
IQN TIEENILFGLPMNR KY EV+RVCCLEKDLEMME+GDQTEIGERGINLSGGQKQRI
Sbjct: 717 IQNSTIEENILFGLPMNREKYKEVIRVCCLEKDLEMMEFGDQTEIGERGINLSGGQKQRI 776
Query: 779 QLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLI 838
QLARAVYQDCDIYLLDDVFSAVDAHTG+DIFKECVRGALKGKTI+LVTHQVDFLHNVDLI
Sbjct: 777 QLARAVYQDCDIYLLDDVFSAVDAHTGTDIFKECVRGALKGKTILLVTHQVDFLHNVDLI 836
Query: 839 LVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITS 898
VMR+G IVQSG+YN LL SG+DFGALVAAH+TSMELVE + S NSP+ PKSP+ S
Sbjct: 837 SVMRDGQIVQSGKYNDLLVSGLDFGALVAAHDTSMELVEASSEISSENSPRPPKSPRGPS 896
Query: 899 NLQEANGENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLS 958
L EANGENK ++ SDKG SKLI+EEER TG +GLHVYK YCTEA+GWWG+V +LLS
Sbjct: 897 KLGEANGENKLLDHPKSDKGTSKLIEEEERATGNIGLHVYKQYCTEAFGWWGIVVAMLLS 956
Query: 959 VAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKT 1018
+ WQ S MAGDYWL+YET+E+ + F PSLFI VYG A +S+V L +R+ FVT +GLKT
Sbjct: 957 LVWQASQMAGDYWLAYETAEERAAMFKPSLFISVYGIIAAVSVVFLAMRSLFVTLMGLKT 1016
Query: 1019 AQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGI 1078
AQ F IL SILHAPMSFFDTTPSGRILSRAS+DQTN+D+FLPF + +T+AMYI++LGI
Sbjct: 1017 AQKLFGGILHSILHAPMSFFDTTPSGRILSRASSDQTNVDIFLPFMLALTIAMYISVLGI 1076
Query: 1079 FIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMT 1138
II CQY WPT+FLVIPL W N+W+RGY+L+TSRELTRLDSITKAPVIHHFSESISGVMT
Sbjct: 1077 IIIICQYTWPTVFLVIPLGWLNFWFRGYFLATSRELTRLDSITKAPVIHHFSESISGVMT 1136
Query: 1139 IRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSS 1198
IR+F KQ +F QENVNRVN NLRMDFHNNGSNEWLG RLE++GSF C + +F+ILLPSS
Sbjct: 1137 IRSFRKQDSFCQENVNRVNANLRMDFHNNGSNEWLGLRLEMIGSFILCASAMFLILLPSS 1196
Query: 1199 IIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLP 1258
I+KPENVGLSLSYGLSLN VLFW+IY SCFVENRMVSVERIKQFT I SEAAWK++DR+
Sbjct: 1197 IVKPENVGLSLSYGLSLNSVLFWSIYFSCFVENRMVSVERIKQFTNIASEAAWKIKDRVL 1256
Query: 1259 PPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL 1318
PPNWPAHGNVDL DLQVRYR NTPLVLKGITLSI GGEKIGVVGRTGSGKST+IQVFFRL
Sbjct: 1257 PPNWPAHGNVDLKDLQVRYRPNTPLVLKGITLSIQGGEKIGVVGRTGSGKSTMIQVFFRL 1316
Query: 1319 VEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSL 1378
VEP+GG+IIIDGIDI +LGLHDLRSRFGIIPQEPVLFEGTVRSN+DP+GQ++DE+IW+SL
Sbjct: 1317 VEPTGGKIIIDGIDICMLGLHDLRSRFGIIPQEPVLFEGTVRSNVDPVGQHTDEDIWRSL 1376
Query: 1379 ERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQ 1438
ERCQLKD VA+KP+KLDS V D+GDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQ
Sbjct: 1377 ERCQLKDAVASKPEKLDSPVIDNGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQ 1436
Query: 1439 TDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
TDA IQ+IIREEFA CTIISIAHRIPTVMDCDRV+VVDAG
Sbjct: 1437 TDAAIQKIIREEFADCTIISIAHRIPTVMDCDRVLVVDAG 1476
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224131142|ref|XP_002321011.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222861784|gb|EEE99326.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2334 bits (6049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1130/1459 (77%), Positives = 1278/1459 (87%), Gaps = 8/1459 (0%)
Query: 23 DTSVSLILHWLRFIFLSPCPQRALLSFVDLLFLLALIVFAVQKLYSKFTASGLSSSDISK 82
+TS+ LI WLRFIFLSPCPQRALLS VDLLFLL L+ FA QKL+S+FT+SG S SDI+
Sbjct: 22 ETSIPLIFQWLRFIFLSPCPQRALLSSVDLLFLLFLLGFAAQKLHSRFTSSGYSGSDINY 81
Query: 83 PLIRN--NRASVRTTLWFKLSLIVTALLALCFTVICILTFSGSTQWP-WKLVDALFWLVH 139
PL+ N +RA + T++WFKLSLIV LALC+ V+ IL FS STQ P WK++D +FWLV
Sbjct: 82 PLVGNGNSRAHITTSIWFKLSLIVPVFLALCYIVVSILAFSQSTQLPRWKVLDGVFWLVQ 141
Query: 140 AITHAVIAILIVHEKKFEAVTHPLSLRIYWVANFIIVSLFTTSGIIRLVSFETAQFCSLK 199
AIT V+AILI+HEK+F AVTHPLSLRIYWVANFII+S+F +SGIIRLV+ E +L
Sbjct: 142 AITQLVVAILIIHEKRFHAVTHPLSLRIYWVANFIIISMFMSSGIIRLVALEH----NLL 197
Query: 200 LDDIVSIVSFPLLTVLLFIAIRGSTGIAVNSDSEPGMDEKTKLYEPLLSKSDVVSGFASA 259
DDIVS ++F L VL +AI+GSTGI V SE M + TKL+EPLL KS+V +GFA+A
Sbjct: 198 FDDIVSAMAFTLSIVLFSVAIKGSTGITVIRHSESVMHDDTKLHEPLLGKSNV-TGFATA 256
Query: 260 SILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFESKWPKPHEKCKHPVR 319
SI+SK+FW+WMNPLL KGYKSPLKID++P+LSP+HRAE+MS+LFES WPKPHEK HPVR
Sbjct: 257 SIISKSFWLWMNPLLRKGYKSPLKIDDVPTLSPEHRAEKMSQLFESSWPKPHEKSNHPVR 316
Query: 320 TTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAK 379
TTLLRCFWKE++FTAFLAI+RL VMYVGP+LIQ FVD+TSGK +S YEGYYLVLILLVAK
Sbjct: 317 TTLLRCFWKEISFTAFLAILRLSVMYVGPMLIQSFVDYTSGKRTSPYEGYYLVLILLVAK 376
Query: 380 FVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQL 439
FVEV + HQFNFNS+KLGMLIRCTLITSLY+KGL LSCSARQAHGVGQIVNYMAVDAQQL
Sbjct: 377 FVEVLTDHQFNFNSRKLGMLIRCTLITSLYKKGLMLSCSARQAHGVGQIVNYMAVDAQQL 436
Query: 440 SDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGIIGVMIFVVMGTKRNNRFQFNV 499
SDMMLQLH++WLMPLQ+ V L LLYN LG S +T ++G +GV++F V KRNN+FQ NV
Sbjct: 437 SDMMLQLHSIWLMPLQVGVGLALLYNALGTSAVTALIGTLGVIVFAVFSNKRNNKFQRNV 496
Query: 500 MKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMW 559
M NRDSRMKATNEMLNYMRVIKFQAWEDHFNKRI FR+SEFGW++KF+YSIS N IVMW
Sbjct: 497 MINRDSRMKATNEMLNYMRVIKFQAWEDHFNKRIQDFRDSEFGWISKFLYSISINTIVMW 556
Query: 560 STPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARL 619
STP+L+STLTF TALL GVPLDAG+VFTTT+IFK+LQEPIR FPQ+MISLSQAM+SLARL
Sbjct: 557 STPLLVSTLTFGTALLLGVPLDAGTVFTTTSIFKMLQEPIRVFPQAMISLSQAMVSLARL 616
Query: 620 DKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIV 679
D YMLS+ELV ESVERV+ CD IAVEV+ G+FSWDDE E L NINLEIKKG LTAIV
Sbjct: 617 DCYMLSKELVEESVERVDACDGRIAVEVKGGIFSWDDEAKGEVLNNINLEIKKGKLTAIV 676
Query: 680 GTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKY 739
GTVGSGKSSLLASILGEMHKISGK+++CGTTAYVAQTSWIQNGTIE+NILFGLPMN+ +Y
Sbjct: 677 GTVGSGKSSLLASILGEMHKISGKIRICGTTAYVAQTSWIQNGTIEDNILFGLPMNKERY 736
Query: 740 GEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSA 799
EV+RVCCLEKDLEMME+GDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDD+FSA
Sbjct: 737 KEVLRVCCLEKDLEMMEFGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDIFSA 796
Query: 800 VDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSG 859
VDAHTG+DIFK+CVRGALKGKTI+LVTHQVDFLHNVDLI VMR+G IVQSG+YN LL SG
Sbjct: 797 VDAHTGTDIFKQCVRGALKGKTILLVTHQVDFLHNVDLISVMRDGQIVQSGKYNDLLASG 856
Query: 860 MDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGN 919
+DFGALVAAHETSMEL+EV +PS NSP PK Q S + E N ENK ++Q SDKGN
Sbjct: 857 LDFGALVAAHETSMELLEVSAEIPSENSPTPPKFSQGLSKIGEENDENKLLDQPKSDKGN 916
Query: 920 SKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSED 979
SKLI+EEER TG VGLHVYK YCTEA+GWWG V LLLS+ WQ SLMAGDYWL++ET+++
Sbjct: 917 SKLIEEEERATGNVGLHVYKQYCTEAFGWWGAVVALLLSLVWQASLMAGDYWLAFETADE 976
Query: 980 HSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFD 1039
+ +F PSLFI VYG A +S+V L++R+ F T +GLKTAQ FF ILRSILHAPMSFFD
Sbjct: 977 RAATFKPSLFISVYGIIAAVSVVFLIMRSLFFTLMGLKTAQNFFGGILRSILHAPMSFFD 1036
Query: 1040 TTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWA 1099
TTPSGRILSRAS DQTN+D+FLPF +AMY+T+ I +I CQY WPT+FL+IPL W
Sbjct: 1037 TTPSGRILSRASADQTNVDIFLPFMFSHAIAMYVTVFSIIVIVCQYTWPTVFLIIPLGWL 1096
Query: 1100 NYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGN 1159
N+WYRGY+L+ SRELTRLDSITKAPVIHHFSESISGVMTIR+F KQ F QENV+RVN N
Sbjct: 1097 NWWYRGYFLAASRELTRLDSITKAPVIHHFSESISGVMTIRSFRKQDRFCQENVSRVNAN 1156
Query: 1160 LRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVL 1219
L MDFHNNGSNEWLGFRLEL+GS C + +F+ILLPSSII+PENVGLSLSYGLSLN VL
Sbjct: 1157 LCMDFHNNGSNEWLGFRLELIGSIILCASAMFLILLPSSIIRPENVGLSLSYGLSLNSVL 1216
Query: 1220 FWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRS 1279
FW IY+SCFVENRMVSVERIKQFT I SEAAWK+EDR+PPPNWPA GNVDL DLQVRYR
Sbjct: 1217 FWCIYLSCFVENRMVSVERIKQFTNISSEAAWKIEDRVPPPNWPAIGNVDLKDLQVRYRP 1276
Query: 1280 NTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLH 1339
NTPLVLKGITLSI GGEKIGVVGRTGSGKST+IQVFFRLVEP+GG+IIIDGIDI +LGLH
Sbjct: 1277 NTPLVLKGITLSIQGGEKIGVVGRTGSGKSTMIQVFFRLVEPTGGKIIIDGIDICMLGLH 1336
Query: 1340 DLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVA 1399
DLRSRFGIIPQEPVLFEGTVRSN+DP+GQY+DEEIW+SLERCQLKDVVAAKP+KLDS V
Sbjct: 1337 DLRSRFGIIPQEPVLFEGTVRSNVDPVGQYTDEEIWESLERCQLKDVVAAKPEKLDSPVT 1396
Query: 1400 DSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISI 1459
D+GDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDA IQ+IIREEFA CTIISI
Sbjct: 1397 DNGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAVIQKIIREEFADCTIISI 1456
Query: 1460 AHRIPTVMDCDRVIVVDAG 1478
AHRIPT+MDCDRV+V+DAG
Sbjct: 1457 AHRIPTIMDCDRVLVIDAG 1475
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536723|ref|XP_003536885.1| PREDICTED: ABC transporter C family member 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2301 bits (5964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1122/1479 (75%), Positives = 1278/1479 (86%), Gaps = 15/1479 (1%)
Query: 2 SSASGWITSLSCSSSVVQSSEDTSVSLILHWLRFIFLSPCPQRALLSFVDLLFLLALIVF 61
++AS WITS SCS + + + HWLRFIFLSPCPQRALLS VD+L LL L VF
Sbjct: 4 AAASTWITSFSCSPNATPN--------LPHWLRFIFLSPCPQRALLSGVDILLLLTLFVF 55
Query: 62 AVQKLYSKFTASGLSSSDISKPLIRNNRASVRTTLWFKLSLIVTALLALCFTVICILTFS 121
A+ KLYS+FT+ G +S++ KPLIRNNR S RTT WFKL+L TA+ + +TV CIL F+
Sbjct: 56 ALIKLYSRFTSIGNHNSELDKPLIRNNRVSNRTTAWFKLTLTTTAVWTILYTVACILVFT 115
Query: 122 GSTQWPWKLVDALFWLVHAITHAVIAILIVHEKKFEAVTHPLSLRIYWVANFIIVSLFTT 181
ST WK D FWL+ AIT V+A+LI+HEKKF+AV HPLSLRIYW+ANFI+VSLFT
Sbjct: 116 SSTDGTWKQTDGFFWLLQAITQLVLAVLIIHEKKFQAVVHPLSLRIYWIANFILVSLFTA 175
Query: 182 SGIIRLVSF--ETAQFCSLKLDDIVSIVSFPLLTVLLFIAIRGSTGIAVNSDSEPGMDEK 239
SG+IRLVS E + S +DD VS +S PL LL +A++GSTGI +++P +DE+
Sbjct: 176 SGVIRLVSVGVEDGKHFSFLVDDTVSFISLPLSLFLLCVAVKGSTGIVSGEETQPLIDEE 235
Query: 240 TKLYEPLLSKSDVVSGFASASILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERM 299
TKLY+ KS+V +GFASAS +SKAFWIW+NPLLSKGYKSPLKIDEIP LSPQHRAERM
Sbjct: 236 TKLYD----KSNV-TGFASASAISKAFWIWINPLLSKGYKSPLKIDEIPYLSPQHRAERM 290
Query: 300 SELFESKWPKPHEKCKHPVRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTS 359
S +FESKWPK E+ KHPVRTTLLRCFW+E+AFTAFLA++RL VM+VGPVLIQ FVDFT+
Sbjct: 291 SVIFESKWPKSDERSKHPVRTTLLRCFWREIAFTAFLAVIRLSVMFVGPVLIQSFVDFTA 350
Query: 360 GKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSA 419
GK SS YEGYYLVLILL AKFVEV +TH FNFNSQKLGMLIRCTLITSLY+KGLRL+ SA
Sbjct: 351 GKGSSVYEGYYLVLILLCAKFVEVLTTHHFNFNSQKLGMLIRCTLITSLYKKGLRLTGSA 410
Query: 420 RQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGII 479
RQ HGVG IVNYMAVD+QQLSDMMLQLHAVW+MP Q+ + L LLYNCLGASVIT ++G++
Sbjct: 411 RQDHGVGPIVNYMAVDSQQLSDMMLQLHAVWMMPFQVGIGLFLLYNCLGASVITALLGLL 470
Query: 480 GVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRES 539
V++F V+ T++N R+QFN M +RDSRMKA NEMLNYMRVIKFQAWE+HFN RIL FR+S
Sbjct: 471 AVIVFAVVSTRKNKRYQFNAMMSRDSRMKAVNEMLNYMRVIKFQAWEEHFNGRILGFRKS 530
Query: 540 EFGWLTKFMYSISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPI 599
EF WL+KFMYSI G IIV+WSTP+LISTLTF TALL GV LDAG+VFTTTT+FKILQEPI
Sbjct: 531 EFQWLSKFMYSICGVIIVLWSTPLLISTLTFGTALLLGVRLDAGTVFTTTTVFKILQEPI 590
Query: 600 RNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENG 659
R FPQSMISLSQA++SL RLD+YM SREL+++SVER EGC + AVEV+DG FSWDD+
Sbjct: 591 RTFPQSMISLSQALVSLGRLDRYMSSRELMDDSVEREEGCGGHTAVEVKDGTFSWDDDGQ 650
Query: 660 EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWI 719
+ LKNINL+I KG+LTAIVGTVGSGKSSLLASILGEMHKISGKV+VCG+TAYVAQTSWI
Sbjct: 651 LKDLKNINLKINKGELTAIVGTVGSGKSSLLASILGEMHKISGKVQVCGSTAYVAQTSWI 710
Query: 720 QNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQ 779
QNGTIEENI+FGLPMNR KY EVVRVC LEKDLEMME+GDQTEIGERGINLSGGQKQRIQ
Sbjct: 711 QNGTIEENIIFGLPMNRQKYNEVVRVCSLEKDLEMMEHGDQTEIGERGINLSGGQKQRIQ 770
Query: 780 LARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLIL 839
LARAVYQD DIYLLDDVFSAVDAHTG++IFKECVRGALKGKT+ILVTHQVDFLHNVDLI+
Sbjct: 771 LARAVYQDSDIYLLDDVFSAVDAHTGTEIFKECVRGALKGKTVILVTHQVDFLHNVDLIV 830
Query: 840 VMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSN 899
VMR+GMIVQSG+Y+ LL SGMDF ALVAAH+TSMELVE G M N K KSP+ SN
Sbjct: 831 VMRDGMIVQSGKYDDLLASGMDFSALVAAHDTSMELVEQGAVMTGENLNKPLKSPKAASN 890
Query: 900 LQEANGENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSV 959
+EANGE+ S++Q S K SKLIKEEERETGKV LH+YK+YCTEA+GWWG++AV+ LSV
Sbjct: 891 NREANGESNSLDQPKSGKEGSKLIKEEERETGKVSLHIYKLYCTEAFGWWGIIAVISLSV 950
Query: 960 AWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTA 1019
WQ S+MA DYWL+YETSE+ + FNPS+FI +Y AV+S+V++V+R+Y VT +GLKTA
Sbjct: 951 LWQASMMASDYWLAYETSEERAQLFNPSMFISIYAIIAVVSVVLIVLRSYSVTVLGLKTA 1010
Query: 1020 QIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIF 1079
QIFFSQIL SILHAPMSFFDTTPSGRILSRASTDQTN+D+F+P F+ VAMYIT++ IF
Sbjct: 1011 QIFFSQILHSILHAPMSFFDTTPSGRILSRASTDQTNVDVFIPLFINFVVAMYITVISIF 1070
Query: 1080 IITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTI 1139
IITCQ +WPT FL+IPLAW N WYRGY+L++SRELTRLDSITKAPVIHHFSESISGVMTI
Sbjct: 1071 IITCQNSWPTAFLLIPLAWLNIWYRGYFLASSRELTRLDSITKAPVIHHFSESISGVMTI 1130
Query: 1140 RAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSI 1199
RAF KQ F EN+ RVN NLRMDFHN SN WLGFRLELLGS FCL+ +FMI+LPSSI
Sbjct: 1131 RAFRKQKEFCGENIKRVNANLRMDFHNFSSNAWLGFRLELLGSLVFCLSAMFMIMLPSSI 1190
Query: 1200 IKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPP 1259
IKPENVGLSLSYGLSLN V+FWAIYMSCF+EN+MVSVERIKQFT IPSEA+W ++DRLPP
Sbjct: 1191 IKPENVGLSLSYGLSLNAVMFWAIYMSCFIENKMVSVERIKQFTNIPSEASWNIKDRLPP 1250
Query: 1260 PNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLV 1319
NWP G+VD+ DLQVRYR NTPLVLKGITLSI+GGEKIGVVGRTGSGKSTLIQVFFRLV
Sbjct: 1251 ANWPGEGHVDIKDLQVRYRPNTPLVLKGITLSINGGEKIGVVGRTGSGKSTLIQVFFRLV 1310
Query: 1320 EPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLE 1379
EP+GG+IIIDGIDIS LGLHDLRSRFGIIPQEPVLFEGTVRSNIDP GQY+DEEIWKSLE
Sbjct: 1311 EPTGGKIIIDGIDISALGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTDEEIWKSLE 1370
Query: 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
RCQLKD VA+KP+KLD+ V D+GDNWSVGQRQLLCLGRVMLK SRLLFMDEATASVDSQT
Sbjct: 1371 RCQLKDAVASKPEKLDTSVVDNGDNWSVGQRQLLCLGRVMLKQSRLLFMDEATASVDSQT 1430
Query: 1440 DAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
DA IQ+IIRE+FAA TIISIAHRIPTVMDCDRV+VVDAG
Sbjct: 1431 DAVIQKIIREDFAARTIISIAHRIPTVMDCDRVLVVDAG 1469
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469090|ref|XP_004152254.1| PREDICTED: ABC transporter C family member 4-like [Cucumis sativus] gi|449484283|ref|XP_004156839.1| PREDICTED: ABC transporter C family member 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2258 bits (5850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1088/1479 (73%), Positives = 1251/1479 (84%), Gaps = 5/1479 (0%)
Query: 1 MSSASGWITSLSCSSSVVQSSEDTSVSLILHWLRFIFLSPCPQRALLSFVDLLFLLALIV 60
M+S S W++S SCS S ED ++ I WLRFIFLSPC QR LLS VDLLFL+ L+
Sbjct: 1 MASTSNWLSSPSCSM-FESSGEDHALGPIFLWLRFIFLSPCAQRVLLSSVDLLFLVVLLA 59
Query: 61 FAVQKLYSKFTASGLSSSDISKPLIRNNRASVRTTLWFKLSLIVTALLALCFTVICILTF 120
FA+QKL+S+F + +SDISKPLI +NR + TT+ FKLSLIV+ +L +C+ VI ILTF
Sbjct: 60 FALQKLFSRFRSGDRMNSDISKPLIGSNRPLITTTILFKLSLIVSGMLTICYLVISILTF 119
Query: 121 SGSTQWPWKLVDALFWLVHAITHAVIAILIVHEKKFEAVTHPLSLRIYWVANFIIVSLFT 180
S S Q W++V+ FWLV A+THAVIAILI+HEK+F+A HPL+LRIYWV NF I+SLF
Sbjct: 120 SSSVQSTWRIVNGPFWLVQALTHAVIAILIIHEKRFKASKHPLTLRIYWVINFAIISLFM 179
Query: 181 TSGIIRLVSFETAQFCSLKLDDIVSIVSFPLLTVLLFIAIRGSTGIAVNSDSEPGMDEKT 240
S I+RL S +L LDDI+SI SFPL VLLF++I+GSTG+ V ++ D ++
Sbjct: 180 ASAIMRLASTGATAELNLTLDDIISIASFPLSVVLLFVSIKGSTGVLVAIAAKEEFDGQS 239
Query: 241 KLYEPLLSKSDVVSGFASASILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERMS 300
L E SK ++ S FASASI+SKAFW+WMNPLLSKGYK+PL+++EIP+LSPQHRAE MS
Sbjct: 240 DLIELASSKLNL-SSFASASIVSKAFWLWMNPLLSKGYKTPLQLEEIPALSPQHRAEVMS 298
Query: 301 ELFESKWPKPHEKCKHPVRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSG 360
LFESKWPKPHEKC HPVRTTL+RCFWKE+AFTA LAIVR CVMYVGPVLIQRFVDF+ G
Sbjct: 299 ALFESKWPKPHEKCSHPVRTTLIRCFWKEIAFTASLAIVRTCVMYVGPVLIQRFVDFSGG 358
Query: 361 KSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSAR 420
K SS YEGYYLVLILL AKF EV +TH FNFNSQK GMLIRCTLITSLY+KGLRLS S+R
Sbjct: 359 KRSSPYEGYYLVLILLAAKFFEVLTTHHFNFNSQKTGMLIRCTLITSLYKKGLRLSSSSR 418
Query: 421 QAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGIIG 480
Q HGVGQIVNYMAVD QQLSDMMLQLHAVWLMPLQ++V L+LL LG + + T++G+IG
Sbjct: 419 QDHGVGQIVNYMAVDTQQLSDMMLQLHAVWLMPLQVTVGLVLLAAYLGFATLVTLLGLIG 478
Query: 481 VMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESE 540
++IFVV+G++RNNRFQFNVMKNRD RMKATNEMLNYMRVIKFQAWE+HF+ RI +FRE E
Sbjct: 479 ILIFVVLGSRRNNRFQFNVMKNRDLRMKATNEMLNYMRVIKFQAWEEHFDNRIQAFREME 538
Query: 541 FGWLTKFMYSISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIR 600
FGWLTKF+YS+ GNI VMWS P+++STLTF ALL GV LDAG VFT TTIFK+LQEPIR
Sbjct: 539 FGWLTKFLYSMFGNITVMWSAPIVVSTLTFGAALLLGVKLDAGVVFTMTTIFKLLQEPIR 598
Query: 601 NFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSW-DDENG 659
FPQ+MISLSQAM+SL RLD++MLS+ELV +SVER EGC NIAV V +G FSW DD NG
Sbjct: 599 TFPQAMISLSQAMVSLGRLDQFMLSKELVEDSVERTEGCHGNIAVVVENGRFSWVDDTNG 658
Query: 660 EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWI 719
E L +INL+IKKG+L A+VGTVGSGKSS+LASILGEMHK+SGKV VCGTTAYVAQTSWI
Sbjct: 659 EIVLHDINLKIKKGELAAVVGTVGSGKSSILASILGEMHKLSGKVHVCGTTAYVAQTSWI 718
Query: 720 QNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQ 779
QNGTIEENILFGLPM+R +Y EVVR+CCL KDLEMMEYGDQTEIGERGINLSGGQKQRIQ
Sbjct: 719 QNGTIEENILFGLPMDRERYREVVRICCLVKDLEMMEYGDQTEIGERGINLSGGQKQRIQ 778
Query: 780 LARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLIL 839
LARAVYQDCDIYLLDDVFSAVDAHTGS+IFKECVRGALKGKT+ILVTHQVDFLHNVD I
Sbjct: 779 LARAVYQDCDIYLLDDVFSAVDAHTGSEIFKECVRGALKGKTVILVTHQVDFLHNVDAIF 838
Query: 840 VMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSN 899
VM++G IVQSG+Y L+ GM+FGALVAAHETSME+V+ + P+ + +
Sbjct: 839 VMKDGTIVQSGKYKELVEGGMEFGALVAAHETSMEIVD--SSNPTLEVSSPKPPHSPSQH 896
Query: 900 LQEANGENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSV 959
ANGEN V+Q ++KG+SKLIK+EER TG V L VYK YCT AYGWWG + LS+
Sbjct: 897 RVAANGENGHVDQPEAEKGSSKLIKDEERATGSVSLEVYKHYCTVAYGWWGAAVAIFLSL 956
Query: 960 AWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTA 1019
WQGSLMAGDYWL+YETS + + +FNP+ F+ VY AVLS++++V R++ + LKTA
Sbjct: 957 VWQGSLMAGDYWLAYETSAERASTFNPTFFLSVYAGIAVLSVLLVVARSFTFVFIVLKTA 1016
Query: 1020 QIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIF 1079
QIFFSQIL SILHAPMSFFDTTPSGRILSRAS DQTNID+F+PFFV I AMYIT+L IF
Sbjct: 1017 QIFFSQILSSILHAPMSFFDTTPSGRILSRASNDQTNIDVFIPFFVTIATAMYITVLSIF 1076
Query: 1080 IITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTI 1139
I+TCQYAWPTIFLVIPL + N WYRGYYL+T+RELTRLDSITKAPVIHHFSESI GVMTI
Sbjct: 1077 IVTCQYAWPTIFLVIPLVYLNVWYRGYYLATARELTRLDSITKAPVIHHFSESIQGVMTI 1136
Query: 1140 RAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSI 1199
R+F KQ F EN+ RVN NLRMDFHNNGSNEWLGFRLE LGS FC +TLF+ILLPSSI
Sbjct: 1137 RSFRKQDQFGGENIRRVNNNLRMDFHNNGSNEWLGFRLEFLGSIVFCTSTLFLILLPSSI 1196
Query: 1200 IKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPP 1259
IKPENVGL+LSYGLSLN V+FWAIYMSCF+EN+MVSVER+KQF+ IP EAAW+++D L P
Sbjct: 1197 IKPENVGLTLSYGLSLNAVMFWAIYMSCFIENKMVSVERVKQFSVIPPEAAWRIKDSLTP 1256
Query: 1260 PNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLV 1319
+WP GNVD+ DLQVRYR NTPLVLKG+TLSIHGGEKIGVVGRTGSGKSTL+QV FRLV
Sbjct: 1257 SSWPYRGNVDIKDLQVRYRPNTPLVLKGLTLSIHGGEKIGVVGRTGSGKSTLVQVLFRLV 1316
Query: 1320 EPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLE 1379
EPS G+I+IDGIDIS LGLHDLRSR GIIPQEPVLFEGTVRSNIDPIGQYSD+EIWKSL+
Sbjct: 1317 EPSAGKIVIDGIDISTLGLHDLRSRLGIIPQEPVLFEGTVRSNIDPIGQYSDDEIWKSLD 1376
Query: 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
RCQLK+VVA+KP+KLDS V D+G+NWSVGQRQLLCLGRVMLK SRLLFMDEATASVDS+T
Sbjct: 1377 RCQLKEVVASKPEKLDSPVVDNGENWSVGQRQLLCLGRVMLKRSRLLFMDEATASVDSKT 1436
Query: 1440 DAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
DA IQ IIRE+F +CTIISIAHRIPTVMDCDRV+V+DAG
Sbjct: 1437 DALIQNIIREDFRSCTIISIAHRIPTVMDCDRVLVIDAG 1475
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357442537|ref|XP_003591546.1| ABC transporter C family protein [Medicago truncatula] gi|355480594|gb|AES61797.1| ABC transporter C family protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2237 bits (5796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1099/1483 (74%), Positives = 1262/1483 (85%), Gaps = 14/1483 (0%)
Query: 5 SGWITSLSCSSSVVQSSEDTSVSLILHWLRFIFLSPCPQRALLSFVDLLFLLALIVFAVQ 64
S WITSLSCS S S + + + WLRFIFLSPCPQRALLS VD+L L L+VFA+
Sbjct: 6 STWITSLSCSPS---SGDAVAAYALPQWLRFIFLSPCPQRALLSAVDVLLLFTLLVFAIT 62
Query: 65 KLYSKFTASGLS-SSDISKPLIRNNRA-SVRTTLWFKLSLIVTALLALCFTVICILTFSG 122
KLYS+FT+S + S +I+KPLI N RA + RTTLWFKL+LI T +L + +TV CIL FS
Sbjct: 63 KLYSRFTSSNRTHSEEINKPLISNTRALNTRTTLWFKLTLIATIVLTVLYTVGCILVFSS 122
Query: 123 ST-QWPWKLVDALFWLVHAITHAVIAILIVHEKKFEAVTHPLSLRIYWVANFIIVSLFTT 181
S + PWK +D LFW+V AIT V+ ILI+H K+FEAV HPLSLRIYW+ANF++V+LFT
Sbjct: 123 SNVESPWKQLDGLFWVVQAITQLVLVILIIHVKRFEAVVHPLSLRIYWIANFVVVALFTA 182
Query: 182 SGIIRLVSFETAQFCSLKLDDIVSIVSFPLLTVLLFIAIRGSTGIAVNSDSEP---GMDE 238
SG+IRLVS E + F +DD+VS VS P LL + ++GSTG+ + D DE
Sbjct: 183 SGVIRLVSLEGSYF--FMVDDVVSFVSLPFSLFLLCVGVKGSTGVIKSRDESQLVIDNDE 240
Query: 239 KTKLY---EPLLSKSDVVSGFASASILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHR 295
+TKL + L+K + +GFASAS SK FWIW+NPLLSKGYKSPL ID++PSLSPQHR
Sbjct: 241 ETKLNGYDDHGLNKPNATTGFASASQFSKTFWIWLNPLLSKGYKSPLNIDDVPSLSPQHR 300
Query: 296 AERMSELFESKWPKPHEKCKHPVRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFV 355
AERMS +FESKWPK E+ K+PVR TLLRCFWK++ FTAFLA++RL VM+VGPVLIQ FV
Sbjct: 301 AERMSVIFESKWPKSDERSKNPVRVTLLRCFWKDIMFTAFLAVIRLSVMFVGPVLIQNFV 360
Query: 356 DFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRL 415
DFTSGK SS YEGYYLVLIL+ AKFVEV +TH FNFNSQKLGMLIRCTLITSLY+KGLRL
Sbjct: 361 DFTSGKGSSVYEGYYLVLILVAAKFVEVLTTHHFNFNSQKLGMLIRCTLITSLYKKGLRL 420
Query: 416 SCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTV 475
SCSARQ HGVG IVNYMAVD QQLSDMMLQLHAVW+MP Q+ + L LLYNCLGAS +T +
Sbjct: 421 SCSARQDHGVGPIVNYMAVDTQQLSDMMLQLHAVWMMPFQVGIGLFLLYNCLGASALTAL 480
Query: 476 VGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILS 535
V ++ V++F+V+ T++N +QF M +RDSRMKA NEMLNYMRVIKFQAWE+HFN RILS
Sbjct: 481 VCLLLVIVFIVITTRQNKNYQFQAMISRDSRMKAVNEMLNYMRVIKFQAWENHFNDRILS 540
Query: 536 FRESEFGWLTKFMYSISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKIL 595
FR SEFGWL+KFMYSI GNIIV+WS+P+LISTLTF TALL GV LDAG+VFTTT++F+IL
Sbjct: 541 FRGSEFGWLSKFMYSICGNIIVLWSSPMLISTLTFGTALLLGVRLDAGTVFTTTSVFRIL 600
Query: 596 QEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWD 655
QEPIR FPQSMISLSQA++SL RLD+YM SREL ++SVER EGCD IAV+V+DG FSWD
Sbjct: 601 QEPIRTFPQSMISLSQALVSLGRLDRYMSSRELSDDSVERNEGCDGVIAVDVQDGTFSWD 660
Query: 656 DENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQ 715
DE E+ LKNINL++ KG+LTAIVGTVGSGKSSLLASILGEMH+ SGKV+VCG+TAYVAQ
Sbjct: 661 DEGLEQDLKNINLKVNKGELTAIVGTVGSGKSSLLASILGEMHRNSGKVQVCGSTAYVAQ 720
Query: 716 TSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQK 775
TSWIQNGTIEENILFGLPMNR KY E++RVCCLEKDL+MMEYGDQTEIGERGINLSGGQK
Sbjct: 721 TSWIQNGTIEENILFGLPMNRQKYNEIIRVCCLEKDLQMMEYGDQTEIGERGINLSGGQK 780
Query: 776 QRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNV 835
QRIQLARAVYQDCDIYLLDDVFSAVDAHTG++IFKECVRGALKGKTI+LVTHQVDFLHNV
Sbjct: 781 QRIQLARAVYQDCDIYLLDDVFSAVDAHTGTEIFKECVRGALKGKTIVLVTHQVDFLHNV 840
Query: 836 DLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQ 895
D I+VMR+GMIVQSGRYN LL+SG+DFG LVAAHETSMELVE G +P NS K S
Sbjct: 841 DRIVVMRDGMIVQSGRYNDLLDSGLDFGVLVAAHETSMELVEQGAAVPGENSNKLMISKS 900
Query: 896 ITSNLQEANGENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVL 955
+ N +E NGE+ S++Q NS KG+SKL+KEEERETGKV ++YK YCTEA+GW G++AVL
Sbjct: 901 ASINNRETNGESNSLDQPNSAKGSSKLVKEEERETGKVSFNIYKRYCTEAFGWAGILAVL 960
Query: 956 LLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVG 1015
LSV WQ S+MA DYWL++ETS + + FNP +FI +Y + ++S++++VVR+Y VT G
Sbjct: 961 FLSVLWQASMMASDYWLAFETSVERAEVFNPVVFISIYAAITIVSVILIVVRSYSVTIFG 1020
Query: 1016 LKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITL 1075
LKTAQIFF+QIL SILHAPMSF+DTTPSGRILSRASTDQTN+D+F+P F+ VAMYIT+
Sbjct: 1021 LKTAQIFFNQILTSILHAPMSFYDTTPSGRILSRASTDQTNVDIFIPLFINFVVAMYITV 1080
Query: 1076 LGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISG 1135
+ I IITCQ +WPT FL+IPL W N WYRGY+LSTSRELTRLDSITKAPVI HFSESISG
Sbjct: 1081 ISIVIITCQNSWPTAFLLIPLVWLNIWYRGYFLSTSRELTRLDSITKAPVIVHFSESISG 1140
Query: 1136 VMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILL 1195
VMT+RAF KQ F EN RVN NLRMDFHN SN WLGFRLELLGS FCL+ LFMILL
Sbjct: 1141 VMTVRAFRKQKEFRLENFKRVNSNLRMDFHNYSSNAWLGFRLELLGSLVFCLSALFMILL 1200
Query: 1196 PSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMED 1255
PS+IIKPENVGLSLSYGLSLN VLFWAIYMSCF+EN+MVSVERIKQF+ IPSEAAW ++D
Sbjct: 1201 PSNIIKPENVGLSLSYGLSLNSVLFWAIYMSCFIENKMVSVERIKQFSNIPSEAAWNIKD 1260
Query: 1256 RLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVF 1315
R PPPNWP G+VD+ DLQVRYR NTPLVLKGITLSI GGEK+GVVGRTGSGKSTLIQVF
Sbjct: 1261 RSPPPNWPGQGHVDIKDLQVRYRPNTPLVLKGITLSISGGEKVGVVGRTGSGKSTLIQVF 1320
Query: 1316 FRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIW 1375
FRLVEP+GG+IIIDGIDI LGLHDLRSRFGIIPQEPVLFEGTVRSNIDP GQY+D+EIW
Sbjct: 1321 FRLVEPTGGKIIIDGIDICALGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTDDEIW 1380
Query: 1376 KSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASV 1435
KSL+RCQLKD VA+KP+KLDSLV D+GDNWSVGQRQLLCLGRVMLK SRLLFMDEATASV
Sbjct: 1381 KSLDRCQLKDTVASKPEKLDSLVVDNGDNWSVGQRQLLCLGRVMLKQSRLLFMDEATASV 1440
Query: 1436 DSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
DSQTDA IQ+IIRE+FAA TIISIAHRIPTVMDCDRV+VVDAG
Sbjct: 1441 DSQTDAVIQKIIREDFAARTIISIAHRIPTVMDCDRVLVVDAG 1483
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297821178|ref|XP_002878472.1| ATMRP10 [Arabidopsis lyrata subsp. lyrata] gi|297324310|gb|EFH54731.1| ATMRP10 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2191 bits (5676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1060/1516 (69%), Positives = 1269/1516 (83%), Gaps = 47/1516 (3%)
Query: 4 ASGWITSLSCSSSVVQSSEDTSVSLILHWLRFIFLSPCPQRALLSFVDLLFLLALIVFAV 63
+S W++ LSCSSS V +S+ ++ WLRFI LSPCPQR L S VDLLFLL L FA+
Sbjct: 5 SSSWVSDLSCSSSAV-IEPSSSLPALIQWLRFILLSPCPQRLLSSTVDLLFLLILFFFAI 63
Query: 64 QKLYSKFTASGL---SSSDISKPLIRNNRASVRTTLWFKLSLIVTALLALCFTVICILTF 120
QKL S +++ +DI+KPL+ + T L FK +++VT LL+ C V+C+L F
Sbjct: 64 QKLCSSSSSASSRINGEADITKPLLGRRTGTRTTGL-FKTTIVVTILLSFCSIVLCVLAF 122
Query: 121 SGSTQWPWKLVDALFWLVHAITHAVIAILIVHEKKFEAVTHPLSLRIYWVANFIIVSLFT 180
+T+ KLVD LFWL+HA+T+ VIA+L++H+K+F +V+HPL+LRIYWV NF++ +LFT
Sbjct: 123 F-TTRTKLKLVDTLFWLIHAVTNVVIAVLVLHQKRFASVSHPLTLRIYWVFNFVVTTLFT 181
Query: 181 TSGIIRLVSFETAQFCSLKLDDIVSIVSFPLLTVLLFIAIRGSTGIAVNSDSEPGMDEKT 240
SGI+ L+S + + SL+ DD+ S +SFPL VLL ++++GSTG+ V S S +
Sbjct: 182 VSGILHLLSDDDSAAASLRADDVASFISFPLTAVLLLVSVKGSTGVVVTSSS---VTAPA 238
Query: 241 KLYEPLLSKSDVVSGFASASILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERMS 300
K + L K + VS +ASAS +SK FW+WMNPLLSKGYKSPL +D++P+LSP+HRAE+++
Sbjct: 239 KSNDVGLEKFENVSLYASASFISKTFWLWMNPLLSKGYKSPLNLDQVPTLSPEHRAEKLA 298
Query: 301 ELFESKWPKPHEKCKHPVRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSG 360
LFESKWPKP E ++PVRTTL+RCFWKE+AFTA LAI+RL V+YVGPVLIQ FVDFTSG
Sbjct: 299 TLFESKWPKPQENSRNPVRTTLIRCFWKEIAFTAVLAIIRLSVIYVGPVLIQSFVDFTSG 358
Query: 361 KSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSAR 420
K SS +GYYLVLILLVAKFVEV STHQFNFNSQKLGMLIR TLIT+LY+KGL+L+ SAR
Sbjct: 359 KGSSPSQGYYLVLILLVAKFVEVLSTHQFNFNSQKLGMLIRSTLITALYKKGLKLTGSAR 418
Query: 421 QAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGIIG 480
Q HGVGQIVNYMAVDAQQLSDMMLQLHA+WLMPLQ++VA++LLY LG SV+TT++G+ G
Sbjct: 419 QNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQVAVAIVLLYGTLGPSVVTTIIGLTG 478
Query: 481 VMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESE 540
+ +F+++GTKRNNRFQF++M NRDSRMKATNEMLNYMRVIKFQAWEDHFN+RIL FR+ E
Sbjct: 479 IFVFILLGTKRNNRFQFSLMTNRDSRMKATNEMLNYMRVIKFQAWEDHFNERILKFRDME 538
Query: 541 FGWLTKFMYSISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIR 600
FGWL+KF+YSI+GNIIV+WSTPVLIS LTF TA+ GV LDAG+VFTTTTIFKILQEPIR
Sbjct: 539 FGWLSKFLYSIAGNIIVLWSTPVLISALTFTTAVFLGVKLDAGTVFTTTTIFKILQEPIR 598
Query: 601 NFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGE 660
FPQSMISLSQAMISL RLD YM+SREL ++VER +GCD N+AVE++DG FSWDDE+ E
Sbjct: 599 TFPQSMISLSQAMISLGRLDAYMMSRELSEDTVERSQGCDGNVAVEIKDGSFSWDDEDDE 658
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ 720
++NIN E+KKG+L AIVGTVGSGKSSLLA++LGEMHK+SGKV+VCG+TAYVAQTSWIQ
Sbjct: 659 PAIENINFEVKKGELAAIVGTVGSGKSSLLAAVLGEMHKLSGKVRVCGSTAYVAQTSWIQ 718
Query: 721 NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQL 780
NGT+++NILFGLPM+R+KY EV++VCCLEKD+++ME+GDQTEIGERGINLSGGQKQRIQL
Sbjct: 719 NGTVQDNILFGLPMDRSKYNEVLKVCCLEKDMQIMEFGDQTEIGERGINLSGGQKQRIQL 778
Query: 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILV 840
ARAVYQ+ D+YLLDDVFSAVDAHTGSDIFK+CVRGALKGKTI+LVTHQVDFLHNVD ILV
Sbjct: 779 ARAVYQESDVYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTILLVTHQVDFLHNVDRILV 838
Query: 841 MREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVEVGK-------------------T 881
MR+GMIVQSG+Y+ L++SG+DFG LVAAHETSMELVE G +
Sbjct: 839 MRDGMIVQSGKYDELVSSGLDFGELVAAHETSMELVEAGSASATAANVPMASPRTQRSIS 898
Query: 882 MPSGNSPKTPKSPQI------------------TSNLQEANGEN-KSVEQSNSDKGNSKL 922
+ S P TPKSP++ + L E N E+ KS SN + S+L
Sbjct: 899 IESPRQPPTPKSPKVHRTTSMESPRVLRTTSMESPRLSELNDESIKSFLGSNIPEDGSRL 958
Query: 923 IKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSM 982
IKEEERE G+V VYK+Y TEAYGWWG++ VL SVAWQGSLMA DYWL+YETS + +
Sbjct: 959 IKEEEREVGQVSFQVYKLYSTEAYGWWGMILVLFFSVAWQGSLMASDYWLAYETSAKNEV 1018
Query: 983 SFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTP 1042
SF+ ++FI VY A +S+V++ +RA++VTH+GLKTAQIFF QIL S++HAPMSFFDTTP
Sbjct: 1019 SFDATVFIRVYIIIAAVSIVLVCLRAFYVTHLGLKTAQIFFKQILNSLVHAPMSFFDTTP 1078
Query: 1043 SGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYW 1102
SGRILSRASTDQTN+D+F+PF +G+ MY TLL IFI+TCQYAWPT+F +IPL W N W
Sbjct: 1079 SGRILSRASTDQTNVDIFIPFMIGLVATMYTTLLSIFIVTCQYAWPTVFFIIPLGWLNIW 1138
Query: 1103 YRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRM 1162
YRGYYL++SRELTRLDSITKAPVIHHFSESI+GVMTIR+F KQ F QENV RVN NLRM
Sbjct: 1139 YRGYYLASSRELTRLDSITKAPVIHHFSESIAGVMTIRSFKKQHMFRQENVKRVNANLRM 1198
Query: 1163 DFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWA 1222
DFHNNGSNEWLGFRLEL+GS+ C++ LFM+LLPS+IIKPENVGLSLSYGLSLNGVLFWA
Sbjct: 1199 DFHNNGSNEWLGFRLELIGSWVLCISALFMVLLPSNIIKPENVGLSLSYGLSLNGVLFWA 1258
Query: 1223 IYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTP 1282
IY+SCF+EN+MVSVERIKQFT+IPSEA W++++ PPPNWP GN+ L D++VRYR NTP
Sbjct: 1259 IYLSCFIENKMVSVERIKQFTDIPSEAKWEIKESRPPPNWPYKGNIRLEDVKVRYRPNTP 1318
Query: 1283 LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLR 1342
LVLKG+T+ I GG+KIGVVGRTGSGKSTLIQV FRLVEPSGG+IIIDGIDI LGLHDLR
Sbjct: 1319 LVLKGLTIDIKGGDKIGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGIDICTLGLHDLR 1378
Query: 1343 SRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSG 1402
SRFGIIPQEPVLFEGTVRSNIDP +YSDEEIWKSLERCQLKDVV++KP+KLDSLVAD+G
Sbjct: 1379 SRFGIIPQEPVLFEGTVRSNIDPTEKYSDEEIWKSLERCQLKDVVSSKPEKLDSLVADNG 1438
Query: 1403 DNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHR 1462
+NWSVGQRQLLCLGRVMLK SR+LF+DEATASVDSQTDA IQ+IIRE+FA CTIISIAHR
Sbjct: 1439 ENWSVGQRQLLCLGRVMLKRSRILFLDEATASVDSQTDAMIQKIIREDFAECTIISIAHR 1498
Query: 1463 IPTVMDCDRVIVVDAG 1478
IPTVMDCDRV+V+DAG
Sbjct: 1499 IPTVMDCDRVLVIDAG 1514
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15227133|ref|NP_182301.1| ABC transporter C family member 4 [Arabidopsis thaliana] gi|90103510|sp|Q7DM58.2|AB4C_ARATH RecName: Full=ABC transporter C family member 4; Short=ABC transporter ABCC.4; Short=AtABCC4; AltName: Full=ATP-energized glutathione S-conjugate pump 4; AltName: Full=Glutathione S-conjugate-transporting ATPase 4; AltName: Full=Multidrug resistance-associated protein 4 gi|7716583|gb|AAF68441.1|AF243509_1 MRP4 [Arabidopsis thaliana] gi|2959767|emb|CAA05625.1| AtMRP4 [Arabidopsis thaliana] gi|3738292|gb|AAC63634.1| glutathione-conjugate transporter AtMRP4 [Arabidopsis thaliana] gi|330255795|gb|AEC10889.1| ABC transporter C family member 4 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2182 bits (5654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1060/1491 (71%), Positives = 1247/1491 (83%), Gaps = 26/1491 (1%)
Query: 3 SASGWITSLSCSSSVVQSSEDTSVSLILHWLRFIFLSPCPQRALLSFVDLLFLLALIVFA 62
S+S W++ LSCS S V +SV + + WLRF+ LSPCPQRAL S VD +FLL FA
Sbjct: 5 SSSPWLSELSCSYSAV-VEHTSSVPVPIQWLRFVLLSPCPQRALFSAVDFIFLLC---FA 60
Query: 63 VQKLYSKFTASGL--SSSDISKPLIR-NNRASVRTTLWFKLSLIVTALLALCFTVICILT 119
+ KL+S ++S ++I KPLI R RTT WFK ++ VT LL+ C V+C+L
Sbjct: 61 LHKLFSSPSSSSEINGHAEIRKPLIGIRGRTPTRTTAWFKTTVAVTVLLSFCSVVLCVLA 120
Query: 120 FSGS--TQWPWKLVDALFWLVHAITHAVIAILIVHEKKFEAVTHPLSLRIYWVANFIIVS 177
F+G TQ PW L+D LFWL+HA+TH VIA+L++H+K+F A+ HPLSLRIYW+++F++ S
Sbjct: 121 FTGKRRTQRPWNLIDPLFWLIHAVTHLVIAVLVLHQKRFAALNHPLSLRIYWISSFVLTS 180
Query: 178 LFTTSGIIRLVSFETAQFCSLKLDDIVSIVSFPLLTVLLFIAIRGSTGIAVNSDSEPGMD 237
LF +GI +S SL+ +D+ S SFPL LL ++RG TG+ + P
Sbjct: 181 LFAVTGIFHFLSDAAT---SLRAEDVASFFSFPLTAFLLIASVRGITGLVTAETNSPTKP 237
Query: 238 EKTKLYEPLLSKSDVVSGFASASILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAE 297
E KSD VS +ASAS+ SK FW+WMNPLLSKGYKSPL ++++P+LSP+H+AE
Sbjct: 238 SDAVSVE----KSDNVSLYASASVFSKTFWLWMNPLLSKGYKSPLTLEQVPTLSPEHKAE 293
Query: 298 RMSELFESKWPKPHEKCKHPVRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDF 357
R++ LFES WPKP E HP+RTTLLRCFWKE+ FTA LAIVRL VMYVGPVLIQ FVDF
Sbjct: 294 RLALLFESSWPKPSENSSHPIRTTLLRCFWKEILFTAILAIVRLGVMYVGPVLIQSFVDF 353
Query: 358 TSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSC 417
TSGK SS ++GYYLVLILLVAKFVEV +THQFNF+SQKLGMLIR TLIT+LY+KGL+L+
Sbjct: 354 TSGKRSSPWQGYYLVLILLVAKFVEVLTTHQFNFDSQKLGMLIRSTLITALYKKGLKLTG 413
Query: 418 SARQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVG 477
SARQ HGVGQIVNYMAVDAQQLSDMMLQLHA+WLMPLQ++VAL+LLY LGASVIT V+G
Sbjct: 414 SARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQVTVALVLLYGSLGASVITAVIG 473
Query: 478 IIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFR 537
+ GV +F+++GT+RNN +QF++M NRDSRMKATNEMLNYMRVIKFQAWE+HFNKRIL FR
Sbjct: 474 LTGVFVFILLGTQRNNGYQFSLMGNRDSRMKATNEMLNYMRVIKFQAWENHFNKRILKFR 533
Query: 538 ESEFGWLTKFMYSISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQE 597
+ EFGWL+KF+YSI+GNIIV+WSTPVLIS LTFATAL GV LDAG+VFTTTTIFKILQE
Sbjct: 534 DMEFGWLSKFLYSIAGNIIVLWSTPVLISALTFATALALGVKLDAGTVFTTTTIFKILQE 593
Query: 598 PIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDE 657
PIR FPQSMISLSQAMISL RLD YM+S+EL ++VER GCD N AVEVRDG FSWDDE
Sbjct: 594 PIRTFPQSMISLSQAMISLGRLDSYMMSKELSEDAVERALGCDGNTAVEVRDGSFSWDDE 653
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTS 717
+ E L +IN ++KKG+LTAIVGTVGSGKSSLLAS+LGEMH+ISG+V+VCG+T YVAQTS
Sbjct: 654 DNEPALSDINFKVKKGELTAIVGTVGSGKSSLLASVLGEMHRISGQVRVCGSTGYVAQTS 713
Query: 718 WIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQR 777
WI+NGT+++NILFGLPM R KY +V+ VC LEKDL+MME+GD+TEIGERGINLSGGQKQR
Sbjct: 714 WIENGTVQDNILFGLPMVREKYNKVLNVCSLEKDLQMMEFGDKTEIGERGINLSGGQKQR 773
Query: 778 IQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDL 837
IQLARAVYQ+CD+YLLDDVFSAVDAHTGSDIFK+CVRGALKGKT++LVTHQVDFLHNVD
Sbjct: 774 IQLARAVYQECDVYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTVLLVTHQVDFLHNVDC 833
Query: 838 ILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVEVG-KTMPSGNSPKTPKSPQI 896
ILVMR+G IV+SG+Y+ L++SG+DFG LVAAHETSMELVE G + SP+TP SP
Sbjct: 834 ILVMRDGKIVESGKYDELVSSGLDFGELVAAHETSMELVEAGADSAAVATSPRTPTSPHA 893
Query: 897 TS--------NLQEANGEN-KSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYG 947
+S +L + N E+ KS S+ + SKLIKEEERETG+V L VYK YCTEAYG
Sbjct: 894 SSPRTSMESPHLSDLNDEHIKSFLGSHIVEDGSKLIKEEERETGQVSLGVYKQYCTEAYG 953
Query: 948 WWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVR 1007
WWG+V VL S+ WQGSLMA DYWL+YETS +++SF+ S+FI Y A++S+V++ +R
Sbjct: 954 WWGIVLVLFFSLTWQGSLMASDYWLAYETSAKNAISFDASVFILGYVIIALVSIVLVSIR 1013
Query: 1008 AYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGI 1067
+Y+VTH+GLKTAQIFF QIL SILHAPMSFFDTTPSGRILSRASTDQTN+D+ +PF +G+
Sbjct: 1014 SYYVTHLGLKTAQIFFRQILNSILHAPMSFFDTTPSGRILSRASTDQTNVDILIPFMLGL 1073
Query: 1068 TVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIH 1127
V+MY TLL IFI+TCQYAWPT F VIPL W N WYR YYL++SRELTR+DSITKAP+IH
Sbjct: 1074 VVSMYTTLLSIFIVTCQYAWPTAFFVIPLGWLNIWYRNYYLASSRELTRMDSITKAPIIH 1133
Query: 1128 HFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCL 1187
HFSESI+GVMTIR+F KQ F QENV RVN NLRMDFHNNGSNEWLGFRLEL+GS+ C+
Sbjct: 1134 HFSESIAGVMTIRSFRKQELFRQENVKRVNDNLRMDFHNNGSNEWLGFRLELVGSWVLCI 1193
Query: 1188 ATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPS 1247
+ LFM+LLPS++I+PENVGLSLSYGLSLN VLF+AIYMSCFVEN+MVSVERIKQFT+IPS
Sbjct: 1194 SALFMVLLPSNVIRPENVGLSLSYGLSLNSVLFFAIYMSCFVENKMVSVERIKQFTDIPS 1253
Query: 1248 EAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSG 1307
E+ W+ ++ LPP NWP HGNV L DL+VRYR NTPLVLKGITL I GGEK+GVVGRTGSG
Sbjct: 1254 ESEWERKETLPPSNWPFHGNVHLEDLKVRYRPNTPLVLKGITLDIKGGEKVGVVGRTGSG 1313
Query: 1308 KSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIG 1367
KSTLIQV FRLVEPSGG+IIIDGIDIS LGLHDLRSRFGIIPQEPVLFEGTVRSNIDP
Sbjct: 1314 KSTLIQVLFRLVEPSGGKIIIDGIDISTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTE 1373
Query: 1368 QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLF 1427
QYSDEEIWKSLERCQLKDVVA KP+KLDSLV D+G+NWSVGQRQLLCLGRVMLK SRLLF
Sbjct: 1374 QYSDEEIWKSLERCQLKDVVATKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLF 1433
Query: 1428 MDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
+DEATASVDSQTDA IQ+IIRE+FA+CTIISIAHRIPTVMD DRV+V+DAG
Sbjct: 1434 LDEATASVDSQTDAVIQKIIREDFASCTIISIAHRIPTVMDGDRVLVIDAG 1484
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228832|ref|NP_191829.1| ABC transporter C family member 14 [Arabidopsis thaliana] gi|75335712|sp|Q9LZJ5.1|AB14C_ARATH RecName: Full=ABC transporter C family member 14; Short=ABC transporter ABCC.14; Short=AtABCC14; AltName: Full=ATP-energized glutathione S-conjugate pump 10; AltName: Full=Glutathione S-conjugate-transporting ATPase 10; AltName: Full=Multidrug resistance-associated protein 10 gi|7362750|emb|CAB83120.1| ABC transporter-like protein [Arabidopsis thaliana] gi|332646860|gb|AEE80381.1| ABC transporter C family member 14 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2181 bits (5651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1046/1484 (70%), Positives = 1248/1484 (84%), Gaps = 41/1484 (2%)
Query: 30 LHWLRFIFLSPCPQRALLSFVDLLFLLALIVFAVQKLYSKFTASGLSSSDISKPLIRNNR 89
+ WLRFI LSPCPQR L S VD+LFLL L FA+QKL S ++ +DI+KPL+
Sbjct: 30 IQWLRFILLSPCPQRLLSSTVDVLFLLILFFFAIQKLCSSSSSRTNGEADITKPLLGRRT 89
Query: 90 ASVRTTLWFKLSLIVTALLALCFTVICILTFSGSTQWPWKLVDALFWLVHAITHAVIAIL 149
+ T L FK +++VT +L+ C V+C+ F +T+ KLVD LFWL+HA+T+ VIA+L
Sbjct: 90 RTRTTGL-FKTTVVVTIVLSFCSLVLCVSAFF-TTRTKLKLVDTLFWLIHAVTNVVIAVL 147
Query: 150 IVHEKKFEAVTHPLSLRIYWVANFIIVSLFTTSGIIRLVSFETAQFCSLKLDDIVSIVSF 209
++H K+F + +HPL+LRIYWV NF++ +LFT SGI+ L+S + A SL+ DD+ S +SF
Sbjct: 148 VLHLKRFASPSHPLTLRIYWVFNFVVTTLFTVSGILHLLSDDPAA-ASLRADDVASFISF 206
Query: 210 PLLTVLLFIAIRGSTGIAVNSDSEPGMDEKTKLYEPLLSKSDVVSGFASASILSKAFWIW 269
PL VLL ++I+GSTG+ V + + + K + ++ KS+ VS +ASAS +SK FW+W
Sbjct: 207 PLTAVLLLVSIKGSTGVVVTTSN---VTAPAKSNDVVVEKSENVSLYASASFISKTFWLW 263
Query: 270 MNPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFESKWPKPHEKCKHPVRTTLLRCFWKE 329
MNPLL KGYKSPL +D++P+LSP+HRAE+++ LFESKWPKP E ++PVRTTL+RCFWKE
Sbjct: 264 MNPLLRKGYKSPLNLDQVPTLSPEHRAEKLATLFESKWPKPQENSRNPVRTTLIRCFWKE 323
Query: 330 VAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQF 389
+AFTA LAI+RL V+YVGPVLIQ FVDFTSGK SS +GYYLVLILL+AKFVEV STHQF
Sbjct: 324 IAFTAVLAIIRLSVIYVGPVLIQSFVDFTSGKRSSPSQGYYLVLILLIAKFVEVLSTHQF 383
Query: 390 NFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHAV 449
NFNSQKLGMLIR TLIT+LY+KGL+L+ SARQ HGVGQIVNYMAVDAQQLSDMMLQLHA+
Sbjct: 384 NFNSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAI 443
Query: 450 WLMPLQISVALILLYNCLGASVITTVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKA 509
WLMPLQ++ A++LLYN LG SV+TTV+G+ G+ +F+++GTKRNNR+QF++M NRDSRMKA
Sbjct: 444 WLMPLQVAAAIVLLYNTLGPSVVTTVIGLTGIFVFILLGTKRNNRYQFSLMMNRDSRMKA 503
Query: 510 TNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMWSTPVLISTLT 569
TNEMLNYMRVIKFQAWEDHFN+RIL FRE EFGWL+KF+YSI+GNIIV+WSTPVLIS LT
Sbjct: 504 TNEMLNYMRVIKFQAWEDHFNERILKFREMEFGWLSKFLYSIAGNIIVLWSTPVLISALT 563
Query: 570 FATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELV 629
F TA+ GV LDAG+VFTTTTIFKILQEPIR FPQSMISLSQAMISL RLD YM+SREL
Sbjct: 564 FTTAVFLGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDAYMMSRELS 623
Query: 630 NESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSL 689
E+VER +GCD N+AVE++DG FSWDDE+ E ++NIN E+KKG+L AIVGTVGSGKSSL
Sbjct: 624 EETVERSQGCDGNVAVEIKDGSFSWDDEDDEPAIENINFEVKKGELAAIVGTVGSGKSSL 683
Query: 690 LASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLE 749
LAS+LGEMHK+SGKV+VCGTTAYVAQTSWIQNGT+++NILFGLPMNR+KY EV++VCCLE
Sbjct: 684 LASVLGEMHKLSGKVRVCGTTAYVAQTSWIQNGTVQDNILFGLPMNRSKYNEVLKVCCLE 743
Query: 750 KDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIF 809
KD+++ME+GDQTEIGERGINLSGGQKQRIQLARAVYQ+ D+YLLDDVFSAVDAHTGSDIF
Sbjct: 744 KDMQIMEFGDQTEIGERGINLSGGQKQRIQLARAVYQESDVYLLDDVFSAVDAHTGSDIF 803
Query: 810 KECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAH 869
K+CVRGALKGKTI+LVTHQVDFLHNVD ILVMR+GMIVQSG+Y+ L++SG+DFG LVAAH
Sbjct: 804 KKCVRGALKGKTILLVTHQVDFLHNVDRILVMRDGMIVQSGKYDELVSSGLDFGELVAAH 863
Query: 870 ETSMELVEVGKTMPSG----------------NSPKTPKSPQI----------------- 896
ETSMELVE G + SP+ PKSP++
Sbjct: 864 ETSMELVEAGSASATAANVPMASPITQRSISIESPRQPKSPKVHRTTSMESPRVLRTTSM 923
Query: 897 -TSNLQEANGEN-KSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAV 954
+ L E N E+ KS SN + S+LIKEEERE G+V VYK+Y TEAYGWWG++ V
Sbjct: 924 ESPRLSELNDESIKSFLGSNIPEDGSRLIKEEEREVGQVSFQVYKLYSTEAYGWWGMILV 983
Query: 955 LLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHV 1014
+ SVAWQ SLMA DYWL+YETS + +SF+ ++FI VY A +S+V++ +RA++VTH+
Sbjct: 984 VFFSVAWQASLMASDYWLAYETSAKNEVSFDATVFIRVYVIIAAVSIVLVCLRAFYVTHL 1043
Query: 1015 GLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYIT 1074
GLKTAQIFF QIL S++HAPMSFFDTTPSGRILSRASTDQTN+D+F+PF +G+ MY T
Sbjct: 1044 GLKTAQIFFKQILNSLVHAPMSFFDTTPSGRILSRASTDQTNVDIFIPFMIGLVATMYTT 1103
Query: 1075 LLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESIS 1134
LL IFI+TCQYAWPT+F +IPL W N WYRGYYL++SRELTRLDSITKAPVIHHFSESI+
Sbjct: 1104 LLSIFIVTCQYAWPTVFFIIPLGWLNIWYRGYYLASSRELTRLDSITKAPVIHHFSESIA 1163
Query: 1135 GVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMIL 1194
GVMTIRAF KQ F QENV RVN NLRMDFHNNGSNEWLGFRLEL+GS+ C++ LFM++
Sbjct: 1164 GVMTIRAFKKQPMFRQENVKRVNANLRMDFHNNGSNEWLGFRLELIGSWVLCISALFMVM 1223
Query: 1195 LPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKME 1254
LPS+IIKPENVGLSLSYGLSLNGVLFWAIY+SCF+EN+MVSVERIKQFT+IP+EA W+++
Sbjct: 1224 LPSNIIKPENVGLSLSYGLSLNGVLFWAIYLSCFIENKMVSVERIKQFTDIPAEAKWEIK 1283
Query: 1255 DRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQV 1314
+ PPPNWP GN+ L D++VRYR NTPLVLKG+T+ I GGEKIGVVGRTGSGKSTLIQV
Sbjct: 1284 ESRPPPNWPYKGNIRLEDVKVRYRPNTPLVLKGLTIDIKGGEKIGVVGRTGSGKSTLIQV 1343
Query: 1315 FFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEI 1374
FRLVEPSGG+IIIDGIDI LGLHDLRSRFGIIPQEPVLFEGTVRSNIDP +YSDEEI
Sbjct: 1344 LFRLVEPSGGKIIIDGIDICTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEKYSDEEI 1403
Query: 1375 WKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATAS 1434
WKSLERCQLKDVVA+KP+KLDSLVAD+G+NWSVGQRQLLCLGRVMLK SR+LF+DEATAS
Sbjct: 1404 WKSLERCQLKDVVASKPEKLDSLVADNGENWSVGQRQLLCLGRVMLKRSRILFLDEATAS 1463
Query: 1435 VDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
VDSQTDA IQ+IIRE+F+ CTIISIAHRIPTVMDCDRV+V+DAG
Sbjct: 1464 VDSQTDAMIQKIIREDFSDCTIISIAHRIPTVMDCDRVLVIDAG 1507
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1479 | ||||||
| TAIR|locus:2043268 | 1516 | ABCC4 "ATP-binding cassette C4 | 0.972 | 0.948 | 0.681 | 0.0 | |
| TAIR|locus:2081755 | 1539 | ABCC14 "ATP-binding cassette C | 0.581 | 0.558 | 0.673 | 0.0 | |
| TAIR|locus:2020235 | 1514 | ABCC5 "ATP-binding cassette C5 | 0.522 | 0.510 | 0.413 | 2.2e-286 | |
| TAIR|locus:2090029 | 1514 | ABCC3 "ATP-binding cassette C3 | 0.931 | 0.909 | 0.405 | 1.4e-279 | |
| TAIR|locus:2090039 | 1466 | ABCC6 "ATP-binding cassette C6 | 0.915 | 0.923 | 0.405 | 1.2e-271 | |
| TAIR|locus:2090049 | 1493 | ABCC7 "ATP-binding cassette C7 | 0.929 | 0.920 | 0.398 | 6.1e-268 | |
| DICTYBASE|DDB_G0284867 | 1593 | abcC8 "ABC transporter C famil | 0.446 | 0.414 | 0.370 | 3.5e-215 | |
| UNIPROTKB|Q92887 | 1545 | ABCC2 "Canalicular multispecif | 0.440 | 0.422 | 0.362 | 2.4e-212 | |
| MGI|MGI:1352447 | 1543 | Abcc2 "ATP-binding cassette, s | 0.409 | 0.392 | 0.375 | 3.8e-211 | |
| UNIPROTKB|F1MIP7 | 1543 | ABCC2 "Uncharacterized protein | 0.380 | 0.364 | 0.386 | 8e-211 |
| TAIR|locus:2043268 ABCC4 "ATP-binding cassette C4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5182 (1829.2 bits), Expect = 0., P = 0.
Identities = 999/1465 (68%), Positives = 1177/1465 (80%)
Query: 30 LHWLRFIFLSPCPQRXXXXXXXXXXXXXXXXXXXQKLYSKFTASGLSS--SDISKPLIR- 86
+ WLRF+ LSPCPQR KL+S ++S + ++I KPLI
Sbjct: 31 IQWLRFVLLSPCPQRALFSAVDFIFLLCFAL---HKLFSSPSSSSEINGHAEIRKPLIGI 87
Query: 87 NNRASVRTTLWFKLSLIVTALLALCFTVICILTFSGS--TQWPWKLVDALFWLVHAITHA 144
R RTT WFK ++ VT LL+ C V+C+L F+G TQ PW L+D LFWL+HA+TH
Sbjct: 88 RGRTPTRTTAWFKTTVAVTVLLSFCSVVLCVLAFTGKRRTQRPWNLIDPLFWLIHAVTHL 147
Query: 145 VIAILIVHEKKFEAVTHPLSLRIYWVANFIIVSLFTTSGIIRLVSFETAQFCSLKLDDIV 204
VIA+L++H+K+F A+ HPLSLRIYW+++F++ SLF +GI +S + A SL+ +D+
Sbjct: 148 VIAVLVLHQKRFAALNHPLSLRIYWISSFVLTSLFAVTGIFHFLS-DAAT--SLRAEDVA 204
Query: 205 SIVSFPLLTVLLFIAIRGSTGIAVNSDSEPGMDEKTKLYEPL-LSKSDVVSGFASASILS 263
S SFPL LL ++RG TG+ + P TK + + + KSD VS +ASAS+ S
Sbjct: 205 SFFSFPLTAFLLIASVRGITGLVTAETNSP-----TKPSDAVSVEKSDNVSLYASASVFS 259
Query: 264 KAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFESKWPKPHEKCKHPVRTTLL 323
K FW+WMNPLLSKGYKSPL ++++P+LSP+H+AER++ LFES WPKP E HP+RTTLL
Sbjct: 260 KTFWLWMNPLLSKGYKSPLTLEQVPTLSPEHKAERLALLFESSWPKPSENSSHPIRTTLL 319
Query: 324 RCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEV 383
RCFWKE+ FTA LAIVRL VMYVGPVLIQ FVDFTSGK SS ++GYYLVLILLVAKFVEV
Sbjct: 320 RCFWKEILFTAILAIVRLGVMYVGPVLIQSFVDFTSGKRSSPWQGYYLVLILLVAKFVEV 379
Query: 384 FSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMM 443
+THQFNF+SQKLGMLIR TLIT+LY+KGL+L+ SARQ HGVGQIVNYMAVDAQQLSDMM
Sbjct: 380 LTTHQFNFDSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMM 439
Query: 444 LQLHAVWLMPLQISVALILLYNCLGASXXXXXXXXXXXXXXXXXXXKRNNRFQFNVMKNR 503
LQLHA+WLMPLQ++VAL+LLY LGAS +RNN +QF++M NR
Sbjct: 440 LQLHAIWLMPLQVTVALVLLYGSLGASVITAVIGLTGVFVFILLGTQRNNGYQFSLMGNR 499
Query: 504 DSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMWSTPV 563
DSRMKATNEMLNYMRVIKFQAWE+HFNKRIL FR+ EFGWL+KF+YSI+GNIIV+WSTPV
Sbjct: 500 DSRMKATNEMLNYMRVIKFQAWENHFNKRILKFRDMEFGWLSKFLYSIAGNIIVLWSTPV 559
Query: 564 LISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYM 623
LIS LTFATAL GV LDAG+VFTTTTIFKILQEPIR FPQSMISLSQAMISL RLD YM
Sbjct: 560 LISALTFATALALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDSYM 619
Query: 624 LSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVG 683
+S+EL ++VER GCD N AVEVRDG FSWDDE+ E L +IN ++KKG+LTAIVGTVG
Sbjct: 620 MSKELSEDAVERALGCDGNTAVEVRDGSFSWDDEDNEPALSDINFKVKKGELTAIVGTVG 679
Query: 684 SGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVV 743
SGKSSLLAS+LGEMH+ISG+V+VCG+T YVAQTSWI+NGT+++NILFGLPM R KY +V+
Sbjct: 680 SGKSSLLASVLGEMHRISGQVRVCGSTGYVAQTSWIENGTVQDNILFGLPMVREKYNKVL 739
Query: 744 RVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAH 803
VC LEKDL+MME+GD+TEIGERGINLSGGQKQRIQLARAVYQ+CD+YLLDDVFSAVDAH
Sbjct: 740 NVCSLEKDLQMMEFGDKTEIGERGINLSGGQKQRIQLARAVYQECDVYLLDDVFSAVDAH 799
Query: 804 TGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFG 863
TGSDIFK+CVRGALKGKT++LVTHQVDFLHNVD ILVMR+G IV+SG+Y+ L++SG+DFG
Sbjct: 800 TGSDIFKKCVRGALKGKTVLLVTHQVDFLHNVDCILVMRDGKIVESGKYDELVSSGLDFG 859
Query: 864 ALVAAHETSMELVEVGKTMPS-GNSPKTPKSPQITS--------NLQEANGEN-KSVEQS 913
LVAAHETSMELVE G + SP+TP SP +S +L + N E+ KS S
Sbjct: 860 ELVAAHETSMELVEAGADSAAVATSPRTPTSPHASSPRTSMESPHLSDLNDEHIKSFLGS 919
Query: 914 NSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLS 973
+ + SKLIKEEERETG+V L VYK YCTEAYGWWG+V VL S+ WQGSLMA DYWL+
Sbjct: 920 HIVEDGSKLIKEEERETGQVSLGVYKQYCTEAYGWWGIVLVLFFSLTWQGSLMASDYWLA 979
Query: 974 YETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHA 1033
YETS +++SF+ S+FI Y A++S+V++ +R+Y+VTH+GLKTAQIFF QIL SILHA
Sbjct: 980 YETSAKNAISFDASVFILGYVIIALVSIVLVSIRSYYVTHLGLKTAQIFFRQILNSILHA 1039
Query: 1034 PMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLV 1093
PMSFFDTTPSGRILSRASTDQTN+D+ +PF +G+ V+MY TLL IFI+TCQYAWPT F V
Sbjct: 1040 PMSFFDTTPSGRILSRASTDQTNVDILIPFMLGLVVSMYTTLLSIFIVTCQYAWPTAFFV 1099
Query: 1094 IPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENV 1153
IPL W N WYR YYL++SRELTR+DSITKAP+IHHFSESI+GVMTIR+F KQ F QENV
Sbjct: 1100 IPLGWLNIWYRNYYLASSRELTRMDSITKAPIIHHFSESIAGVMTIRSFRKQELFRQENV 1159
Query: 1154 NRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXX 1213
RVN NLRMDFHNNGSNEWLGFRLEL+GS+ C++ LFM+LLPS++I+PE
Sbjct: 1160 KRVNDNLRMDFHNNGSNEWLGFRLELVGSWVLCISALFMVLLPSNVIRPENVGLSLSYGL 1219
Query: 1214 XXXXXXFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDL 1273
F+AIYMSCFVEN+MVSVERIKQFT+IPSE+ W+ ++ LPP NWP HGNV L DL
Sbjct: 1220 SLNSVLFFAIYMSCFVENKMVSVERIKQFTDIPSESEWERKETLPPSNWPFHGNVHLEDL 1279
Query: 1274 QVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXX 1333
+VRYR NTPLVLKGITL I GGEK+GVVGRTGSGKSTLIQV FRLVEPS
Sbjct: 1280 KVRYRPNTPLVLKGITLDIKGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGIDI 1339
Query: 1334 XXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDK 1393
RSRFGIIPQEPVLFEGTVRSNIDP QYSDEEIWKSLERCQLKDVVA KP+K
Sbjct: 1340 STLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEQYSDEEIWKSLERCQLKDVVATKPEK 1399
Query: 1394 LDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAA 1453
LDSLV D+G+NWSVGQRQLLCLGRVMLK SRLLF+DEATASVDSQTDA IQ+IIRE+FA+
Sbjct: 1400 LDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLFLDEATASVDSQTDAVIQKIIREDFAS 1459
Query: 1454 CTIISIAHRIPTVMDCDRVIVVDAG 1478
CTIISIAHRIPTVMD DRV+V+DAG
Sbjct: 1460 CTIISIAHRIPTVMDGDRVLVIDAG 1484
|
|
| TAIR|locus:2081755 ABCC14 "ATP-binding cassette C14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3068 (1085.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 585/868 (67%), Positives = 704/868 (81%)
Query: 30 LHWLRFIFLSPCPQRXXXXXXXXXXXXXXXXXXXQKLYSKFTASGLSSSDISKPLIRNNR 89
+ WLRFI LSPCPQR QKL S ++ +DI+KPL+ R
Sbjct: 30 IQWLRFILLSPCPQRLLSSTVDVLFLLILFFFAIQKLCSSSSSRTNGEADITKPLL-GRR 88
Query: 90 ASVRTTLWFKLSLIVTALLALCFTVICILTFSGSTQWPWKLVDALFWLVHAITHAVIAIL 149
RTT FK +++VT +L+ C V+C+ F +T+ KLVD LFWL+HA+T+ VIA+L
Sbjct: 89 TRTRTTGLFKTTVVVTIVLSFCSLVLCVSAFF-TTRTKLKLVDTLFWLIHAVTNVVIAVL 147
Query: 150 IVHEKKFEAVTHPLSLRIYWVANFIIVSLFTTSGIIRLVSFETAQFCSLKLDDIVSIVSF 209
++H K+F + +HPL+LRIYWV NF++ +LFT SGI+ L+S + A SL+ DD+ S +SF
Sbjct: 148 VLHLKRFASPSHPLTLRIYWVFNFVVTTLFTVSGILHLLSDDPAA-ASLRADDVASFISF 206
Query: 210 PLLTVLLFIAIRGSTGIAVNSDSEPGMDEKTKLYEPLLSKSDVVSGFASASILSKAFWIW 269
PL VLL ++I+GSTG+ V + + + K + ++ KS+ VS +ASAS +SK FW+W
Sbjct: 207 PLTAVLLLVSIKGSTGVVVTTSN---VTAPAKSNDVVVEKSENVSLYASASFISKTFWLW 263
Query: 270 MNPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFESKWPKPHEKCKHPVRTTLLRCFWKE 329
MNPLL KGYKSPL +D++P+LSP+HRAE+++ LFESKWPKP E ++PVRTTL+RCFWKE
Sbjct: 264 MNPLLRKGYKSPLNLDQVPTLSPEHRAEKLATLFESKWPKPQENSRNPVRTTLIRCFWKE 323
Query: 330 VAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQF 389
+AFTA LAI+RL V+YVGPVLIQ FVDFTSGK SS +GYYLVLILL+AKFVEV STHQF
Sbjct: 324 IAFTAVLAIIRLSVIYVGPVLIQSFVDFTSGKRSSPSQGYYLVLILLIAKFVEVLSTHQF 383
Query: 390 NFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHAV 449
NFNSQKLGMLIR TLIT+LY+KGL+L+ SARQ HGVGQIVNYMAVDAQQLSDMMLQLHA+
Sbjct: 384 NFNSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAI 443
Query: 450 WLMPLQISVALILLYNCLGASXXXXXXXXXXXXXXXXXXXKRNNRFQFNVMKNRDSRMKA 509
WLMPLQ++ A++LLYN LG S KRNNR+QF++M NRDSRMKA
Sbjct: 444 WLMPLQVAAAIVLLYNTLGPSVVTTVIGLTGIFVFILLGTKRNNRYQFSLMMNRDSRMKA 503
Query: 510 TNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMWSTPVLISTLT 569
TNEMLNYMRVIKFQAWEDHFN+RIL FRE EFGWL+KF+YSI+GNIIV+WSTPVLIS LT
Sbjct: 504 TNEMLNYMRVIKFQAWEDHFNERILKFREMEFGWLSKFLYSIAGNIIVLWSTPVLISALT 563
Query: 570 FATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELV 629
F TA+ GV LDAG+VFTTTTIFKILQEPIR FPQSMISLSQAMISL RLD YM+SREL
Sbjct: 564 FTTAVFLGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDAYMMSRELS 623
Query: 630 NESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSL 689
E+VER +GCD N+AVE++DG FSWDDE+ E ++NIN E+KKG+L AIVGTVGSGKSSL
Sbjct: 624 EETVERSQGCDGNVAVEIKDGSFSWDDEDDEPAIENINFEVKKGELAAIVGTVGSGKSSL 683
Query: 690 LASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLE 749
LAS+LGEMHK+SGKV+VCGTTAYVAQTSWIQNGT+++NILFGLPMNR+KY EV++VCCLE
Sbjct: 684 LASVLGEMHKLSGKVRVCGTTAYVAQTSWIQNGTVQDNILFGLPMNRSKYNEVLKVCCLE 743
Query: 750 KDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIF 809
KD+++ME+GDQTEIGERGINLSGGQKQRIQLARAVYQ+ D+YLLDDVFSAVDAHTGSDIF
Sbjct: 744 KDMQIMEFGDQTEIGERGINLSGGQKQRIQLARAVYQESDVYLLDDVFSAVDAHTGSDIF 803
Query: 810 KECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAH 869
K+CVRGALKGKTI+LVTHQVDFLHNVD ILVMR+GMIVQSG+Y+ L++SG+DFG LVAAH
Sbjct: 804 KKCVRGALKGKTILLVTHQVDFLHNVDRILVMRDGMIVQSGKYDELVSSGLDFGELVAAH 863
Query: 870 ETSMELVEVGKTMPSGNSPKTPKSPQIT 897
ETSMELVE G S + P + IT
Sbjct: 864 ETSMELVEAGSA--SATAANVPMASPIT 889
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| TAIR|locus:2020235 ABCC5 "ATP-binding cassette C5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1565 (556.0 bits), Expect = 2.2e-286, Sum P(2) = 2.2e-286
Identities = 330/799 (41%), Positives = 484/799 (60%)
Query: 145 VIAILIVHEKKFEAVTHPLSLRIYWVANFIIVSLFTTSGIIRLVSFETAQFCSLKLDDIV 204
V++ L++H K + P +RI+W F I L T R ++ E CS + +
Sbjct: 125 VLSFLVLHLKYKSSEKLPFLVRIWWFLAFSIC-LCTMYVDGRRLAIEGWSRCSSHV--VA 181
Query: 205 SIVSFPLLTVLLFIAIRGSTGIAVNSDSEPGMDEKTKLYEPLLSKSDV----VSGFASAS 260
++ P L L F+A RG +GI V S + L EPLL + + V+ +++A
Sbjct: 182 NLAVTPALGFLCFLAWRGVSGIQVTRSS-------SDLQEPLLVEEEAACLKVTPYSTAG 234
Query: 261 ILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFESKWP--KPHEKCKHP- 317
++S W++PLLS G K PL++ +IP L+P+ RA+ ++ +S W K K P
Sbjct: 235 LVSLITLSWLDPLLSAGSKRPLELKDIPLLAPRDRAKSSYKVLKSNWKRCKSENPSKPPS 294
Query: 318 VRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLV 377
+ +++ FWKE A A A + V YVGP LI FVD+ GK +EGY L I
Sbjct: 295 LARAIMKSFWKEAACNAVFAGLNTLVSYVGPYLISYFVDYLGGKEIFPHEGYVLAGIFFT 354
Query: 378 AKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQ 437
+K +E +T Q+ LGM +R L +YRKGL+LS A+Q H G+IVNYMAVD Q
Sbjct: 355 SKLIETVTTRQWYMGVDILGMHVRSALTAMVYRKGLKLSSIAKQNHTSGEIVNYMAVDVQ 414
Query: 438 QLSDMMLQLHAVWLMPLQISVALILLYNCLGASXXXXXXXXXXXXXXXXXXXKRNNRFQF 497
++ D LH +W++P+QI +AL +LY +G + K +Q
Sbjct: 415 RIGDYSWYLHDIWMLPMQIVLALAILYKSVGIAAVATLVATIISILVTIPLAKVQEDYQD 474
Query: 498 NVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIV 557
+M +D RM+ T+E L MRV+K QAWED + R+ RE E+GWL K +YS + +
Sbjct: 475 KLMTAKDERMRKTSECLRNMRVLKLQAWEDRYRVRLEEMREEEYGWLRKALYSQAFVTFI 534
Query: 558 MWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLA 617
WS+P+ ++ +TFAT++ G L AG V + F+ILQEP+RNFP + ++Q +SL
Sbjct: 535 FWSSPIFVAAVTFATSIFLGTQLTAGGVLSALATFRILQEPLRNFPDLVSMMAQTKVSLD 594
Query: 618 RLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTA 677
R+ ++ EL ++ + NIA+E++DGVF WD + L I ++++KG A
Sbjct: 595 RISGFLQEEELQEDATVVIPRGLSNIAIEIKDGVFCWDPFSSRPTLSGIQMKVEKGMRVA 654
Query: 678 IVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRA 737
+ GTVGSGKSS ++ ILGE+ KISG+V++CGTT YV+Q++WIQ+G IEENILFG PM +
Sbjct: 655 VCGTVGSGKSSFISCILGEIPKISGEVRICGTTGYVSQSAWIQSGNIEENILFGSPMEKT 714
Query: 738 KYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVF 797
KY V++ C L+KD+E+ +GDQT IGERGINLSGGQKQR+QLARA+YQD DIYLLDD F
Sbjct: 715 KYKNVIQACSLKKDIELFSHGDQTIIGERGINLSGGQKQRVQLARALYQDADIYLLDDPF 774
Query: 798 SAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLN 857
SA+DAHTGSD+F++ + AL KT++ VTHQV+FL DLILV++EG I+QSG+Y+ LL
Sbjct: 775 SALDAHTGSDLFRDYILSALAEKTVVFVTHQVEFLPAADLILVLKEGRIIQSGKYDDLLQ 834
Query: 858 SGMDFGALVAAHETSMELVEVGKTMPSGNSPKTP-KSPQITSNLQEANGEN------KSV 910
+G DF ALV+AH ++E +++ + S +S + P + + N + EN K V
Sbjct: 835 AGTDFKALVSAHHEAIEAMDI-PSPSSEDSDENPIRDSLVLHNPKSDVFENDIETLAKEV 893
Query: 911 EQSNSDKGNSKLIKEEERE 929
++ S + K IKE++++
Sbjct: 894 QEGGS-ASDLKAIKEKKKK 911
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| TAIR|locus:2090029 ABCC3 "ATP-binding cassette C3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2687 (950.9 bits), Expect = 1.4e-279, P = 1.4e-279
Identities = 574/1416 (40%), Positives = 847/1416 (59%)
Query: 93 RTTLWFKLSLIVTALLALCFTVICILTFSGSTQWP--W----KLVDALFWLVHAITHAVI 146
R FK +L + LAL + +++ SG + W +LV +L +L+ ++ V+
Sbjct: 75 RRDFGFKSALFCS--LALSLLNLVLMSLSGFYWYESGWLDNEQLVSSLGFLLGMVSWGVL 132
Query: 147 AILIVHEKKFEAVTHPLSLRIYWVANFIIVSLFTTSGIIRLVSFETAQFCSLKLDDIVSI 206
+I + + E P LR+ W+ +++VS ++ ++ V +E + + L + I
Sbjct: 133 SICLHRCRDCEHKKAPFLLRL-WLVFYLVVSCYSL--VVDFVMYERRETVPVHLL-VFDI 188
Query: 207 VSFPLLTVLLFIAI-----RGSTGIA----VNS-DSEPGMDEKTKLYEPLLSKSDVVSGF 256
V+F L ++A+ S G+ +N DS G D+ +L + + S + +
Sbjct: 189 VAFIAAVFLGYVAVLKKDRSNSNGVLEEPLLNGGDSRVGGDDSVELNKT--NGSGEATPY 246
Query: 257 ASASILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFESKWPKPHEKCKH 316
+ A ILS + WM+PL+ G K L ++++P L ++ F S P +
Sbjct: 247 SRAGILSLLTFSWMSPLIDIGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLESPDGGERS 306
Query: 317 PVRT-TLLRCF-----WKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYY 370
V T L++ W E+ TAF A + YVGP LI FV + +G+ +EGY
Sbjct: 307 GVTTFKLIKALYFTAQW-EILVTAFFAFIYTVASYVGPALIDTFVQYLNGRRQYNHEGYV 365
Query: 371 LVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVN 430
LV+ AK VE S + F QK+G+ +R L+ +Y KGL LSC ++Q G+I+N
Sbjct: 366 LVITFFAAKIVECLSQRHWFFRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRTSGEIIN 425
Query: 431 YMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASXXXXXXXXXXXXXXXXXXXK 490
+M VDA+++ + +H W++ LQ+ +AL +LY LG + +
Sbjct: 426 FMTVDAERIGNFSWYMHDPWMVLLQVGLALWILYRNLGLASIAALVATIIVMLINFPFGR 485
Query: 491 RNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYS 550
RFQ +M+ +DSRMK+T+E+L MR++K Q WE F +I R+SE GWL K++Y+
Sbjct: 486 MQERFQEKLMEAKDSRMKSTSEILRNMRILKLQGWEMKFLSKIFDLRKSEEGWLKKYVYN 545
Query: 551 ISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLS 610
+ V W P L+S TF +L G+PL++G + + F+ILQEPI N P ++ +
Sbjct: 546 SAVISFVFWGAPTLVSVSTFGACILLGIPLESGKILSALATFRILQEPIYNLPDTISMIV 605
Query: 611 QAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEI 670
Q +SL RL Y+ L + VER+ ++AVEV + SWD + LK+IN ++
Sbjct: 606 QTKVSLDRLASYLCLDNLQPDIVERLPKGSSDVAVEVINSTLSWDVSSSNPTLKDINFKV 665
Query: 671 KKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILF 730
G A+ GTVGSGKSSLL+S+LGE+ K+SG +KVCGT AYVAQ+ WIQ+G IE+NILF
Sbjct: 666 FPGMKVAVCGTVGSGKSSLLSSLLGEVPKVSGSLKVCGTKAYVAQSPWIQSGKIEDNILF 725
Query: 731 GLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDI 790
G PM R +Y +V+ C L KDLE++ +GDQT IGERGINLSGGQKQRIQ+ARA+YQD DI
Sbjct: 726 GKPMERERYDKVLEACSLSKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADI 785
Query: 791 YLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSG 850
YL DD FSAVDAHTGS +FKE + G L K++I VTHQV+FL DLILVM++G I Q+G
Sbjct: 786 YLFDDPFSAVDAHTGSHLFKEVLLGLLCSKSVIYVTHQVEFLPAADLILVMKDGRISQAG 845
Query: 851 RYNALLNSGMDFGALVAAHETSMELVE-VGKTMPSGNSPKTPKSPQITSNL---QEANGE 906
+YN +LNSG DF L+ AH+ ++ +V+ V S S ++ + + ++ +
Sbjct: 846 KYNDILNSGTDFMELIGAHQEALAVVDSVDANSVSEKSALGQENVIVKDAIAVDEKLESQ 905
Query: 907 NKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLM 966
+ ++ S + ++I+EEERE G V L VY Y T AYG V +LL V +Q +
Sbjct: 906 DLKNDKLESVEPQRQIIQEEEREKGSVALDVYWKYITLAYGGALVPFILLGQVLFQLLQI 965
Query: 967 AGDYWLSYET--SEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFS 1024
+YW+++ T SED S + VY + A S + +++RA + G KTA F
Sbjct: 966 GSNYWMAWATPVSEDVQAPVKLSTLMIVYVALAFGSSLCILLRATLLVTAGYKTATELFH 1025
Query: 1025 QILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQ 1084
++ I +PMSFFD+TPSGRI+SRASTDQ+ +DL LP+ G I L+GI + Q
Sbjct: 1026 KMHHCIFRSPMSFFDSTPSGRIMSRASTDQSAVDLELPYQFGSVAITVIQLIGIIGVMSQ 1085
Query: 1085 YAWPTIFLV-IPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFG 1143
+W +FLV IP+ A+ WY+ YY++ +REL+RL + KAP+I HFSE+ISG TIR+F
Sbjct: 1086 VSW-LVFLVFIPVVAASIWYQRYYIAAARELSRLVGVCKAPLIQHFSETISGATTIRSFS 1144
Query: 1144 KQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPE 1203
++ F +N+ +G R F+ G+ EWL FRL++L S TF + +F++ +P+ +I P
Sbjct: 1145 QEFRFRSDNMRLSDGYSRPKFYTAGAMEWLCFRLDMLSSLTFVFSLVFLVSIPTGVIDPS 1204
Query: 1204 XXXXXXXXXXXXXXXXFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWP 1263
W I+ C +EN+++SVERI Q+ +PSE +E P +WP
Sbjct: 1205 LAGLAVTYGLSLNTLQAWLIWTLCNLENKIISVERILQYASVPSEPPLVIESNRPEQSWP 1264
Query: 1264 AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSX 1323
+ G V++ DLQVRY + PLVL+GIT + GG + G+VGRTGSGKSTLIQ FR+VEPS
Sbjct: 1265 SRGEVEIRDLQVRYAPHMPLVLRGITCTFKGGLRTGIVGRTGSGKSTLIQTLFRIVEPSA 1324
Query: 1324 XXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQL 1383
R R IIPQ+P +FEGT+RSN+DP+ +Y+D++IW++L++CQL
Sbjct: 1325 GEIRIDGVNILTIGLHDLRLRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQIWEALDKCQL 1384
Query: 1384 KDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI 1443
D V K KLDS V+++GDNWS+GQRQL+CLGRV+LK S++L +DEATASVD+ TD I
Sbjct: 1385 GDEVRKKEQKLDSSVSENGDNWSMGQRQLVCLGRVLLKRSKILVLDEATASVDTATDNLI 1444
Query: 1444 QRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479
Q+ +RE F+ CT+I+IAHRI +V+D D V+++ G+
Sbjct: 1445 QKTLREHFSDCTVITIAHRISSVIDSDMVLLLSNGI 1480
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| TAIR|locus:2090039 ABCC6 "ATP-binding cassette C6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2612 (924.5 bits), Expect = 1.2e-271, P = 1.2e-271
Identities = 566/1396 (40%), Positives = 818/1396 (58%)
Query: 99 KLSLIVTALLALCFTVICILTFSGSTQWPWKLVDALFWLVHAITHAVIAILIVHEKKFEA 158
KL LI L++ ++V+ +L+ W +D L + A+T I++ +
Sbjct: 62 KLVLICCVSLSVFYSVLSLLSCLHWHTNGWPFLDLL---LAALTWGSISVYLFGRYTNSC 118
Query: 159 VTHPLSL-RIYWVANFIIVSLFTTSGIIRLVSFETAQFCSLKLDDIVSIVSFPLLTVLLF 217
L L R++WV F +VS + LV F K ++VS V F + +
Sbjct: 119 EQKVLFLLRVWWVF-FFVVSCY------HLV----VDFVLYKKQEMVS-VHFVISDL--- 163
Query: 218 IAIRGSTGIAVNSDSEPGMDEKTKLY-EPLLSKSD------VVSGFASASILSKAFWIWM 270
+ + + + + G E+ L EPLLS ++ V + F+ A ILS+ + WM
Sbjct: 164 VGVCAGLFLCCSCLWKKGEGERIDLLKEPLLSSAESSDNEEVTAPFSKAGILSRMSFSWM 223
Query: 271 NPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFESK--WPKPHEKCK-HPVRTTLLRCFW 327
+PL++ G + + I ++P L E + +F SK W + + L W
Sbjct: 224 SPLITLGNEKIIDIKDVPQLDRSDTTESLFWIFRSKLEWDDGERRITTFKLIKALFLSVW 283
Query: 328 KEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTH 387
+++ +A LA V YV P L+ FV + +G +GY LV VAK VE +
Sbjct: 284 RDIVLSALLAFVYTVSCYVAPYLMDNFVQYLNGNRQYKNQGYVLVTTFFVAKLVECQTQR 343
Query: 388 QFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLH 447
Q+ F QK G+ +R L++ +Y KGL L C ++Q H G+I+N MAVDA ++S +H
Sbjct: 344 QWFFRGQKAGLGMRSVLVSMIYEKGLTLPCHSKQGHTSGEIINLMAVDADRISAFSWFMH 403
Query: 448 AVWLMPLQISVALILLYNCLGASXXXXXXXXXXXXXXXXXXXKRNNRFQFNVMKNRDSRM 507
W++ LQ+S+AL +LY LG K +FQ ++MK++D+RM
Sbjct: 404 DPWILVLQVSLALWILYKSLGLGSIAAFPATILVMLANYPFAKLEEKFQSSLMKSKDNRM 463
Query: 508 KATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMWSTPVLIST 567
K T+E+L M+++K Q WE F +IL R E GWL KF+Y+ S V+W+ P IS
Sbjct: 464 KKTSEVLLNMKILKLQGWEMKFLSKILELRHIEAGWLKKFVYNSSAINSVLWAAPSFISA 523
Query: 568 LTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRE 627
F LL +PL++G + F+ILQ PI P+++ + Q +SL R+ ++ +
Sbjct: 524 TAFGACLLLKIPLESGKILAALATFRILQGPIYKLPETISMIVQTKVSLNRIASFLCLDD 583
Query: 628 LVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKS 687
L + V R+ +AVE+ +G FSWDD + L+++N ++ +G AI GTVGSGKS
Sbjct: 584 LQQDVVGRLPSGSSEMAVEISNGTFSWDDSSPIPTLRDMNFKVSQGMNVAICGTVGSGKS 643
Query: 688 SLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCC 747
SLL+SILGE+ KISG +KVCG AY+AQ+ WIQ+G +EENILFG PM R Y V+ C
Sbjct: 644 SLLSSILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEENILFGKPMEREWYDRVLEACS 703
Query: 748 LEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSD 807
L KDLE++ + DQT IGERGINLSGGQKQRIQ+ARA+YQD DIYL DD FSAVDAHTGS
Sbjct: 704 LNKDLEILPFHDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSH 763
Query: 808 IFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVA 867
+FKE + G L+ KT+I VTHQV+FL DLILVM++G I Q+G+Y+ +L+SG DF LV
Sbjct: 764 LFKEVLLGLLRHKTVIYVTHQVEFLPEADLILVMKDGKITQAGKYHEILDSGTDFMELVG 823
Query: 868 AHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSD-KGNSKLIKEE 926
AH ++ ++ +T + T K ++ +K +++ SD K + +L++EE
Sbjct: 824 AHTEALATIDSCETGYASEKSTTDKENEVL--------HHKEKQENGSDNKPSGQLVQEE 875
Query: 927 ERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYET--SEDHSMSF 984
ERE GKVG VYK Y AYG + +L++ V +Q + +YW+++ T S+D
Sbjct: 876 EREKGKVGFTVYKKYMALAYGGAVIPLILVVQVLFQLLSIGSNYWMTWVTPVSKDVEPPV 935
Query: 985 NPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSG 1044
+ I VY AV S +++RA V G K A F+Q+ I A MSFFD TP G
Sbjct: 936 SGFTLILVYVLLAVASSFCILIRALLVAMTGFKMATELFTQMHLRIFRASMSFFDATPMG 995
Query: 1045 RILSRASTDQTNIDLFLPF-FVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWY 1103
RIL+RASTDQ+ DL LP F + +A I +LGI + Q AW + + IP+ A WY
Sbjct: 996 RILNRASTDQSVADLRLPGQFAYVAIAA-INILGIIGVIVQVAWQVLIVFIPVVAACAWY 1054
Query: 1104 RGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMD 1163
R YY+S +REL RL I+++PV+HHFSE++SG+ TIR+F ++ F + + + R+
Sbjct: 1055 RQYYISAARELARLAGISRSPVVHHFSETLSGITTIRSFDQEPRFRGDIMRLSDCYSRLK 1114
Query: 1164 FHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXXFWAI 1223
FH+ G+ EWL FRLELL +F F + + ++ P +I P I
Sbjct: 1115 FHSTGAMEWLCFRLELLSTFAFASSLVILVSAPEGVINPSLAGLAITYALNLNTLQATLI 1174
Query: 1224 YMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPL 1283
+ C +EN+M+SVER+ Q+T IPSE +E P +WP+ G + + +LQVRY + P+
Sbjct: 1175 WTLCDLENKMISVERMLQYTNIPSEPPLVIETTRPEKSWPSRGEITICNLQVRYGPHLPM 1234
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXXRS 1343
VL G+T + GG K G+VGRTG GKSTLIQ FR+VEP+ RS
Sbjct: 1235 VLHGLTCTFPGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILSIGLHDLRS 1294
Query: 1344 RFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGD 1403
R IIPQ+P +FEGT+RSN+DP+ +Y+D++IW++L+ CQL D V K KLDS V+++G
Sbjct: 1295 RLSIIPQDPTMFEGTIRSNLDPLEEYTDDQIWEALDNCQLGDEVRKKELKLDSPVSENGQ 1354
Query: 1404 NWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRI 1463
NWSVGQRQL+CLGRV+LK S+LL +DEATAS+D+ TD IQ +R FA CT+I+IAHRI
Sbjct: 1355 NWSVGQRQLVCLGRVLLKRSKLLVLDEATASIDTATDNLIQETLRHHFADCTVITIAHRI 1414
Query: 1464 PTVMDCDRVIVVDAGL 1479
+V+D D V+++D GL
Sbjct: 1415 SSVIDSDMVLLLDQGL 1430
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| TAIR|locus:2090049 ABCC7 "ATP-binding cassette C7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2577 (912.2 bits), Expect = 6.1e-268, P = 6.1e-268
Identities = 564/1415 (39%), Positives = 823/1415 (58%)
Query: 87 NNRASVRTTLWFKLSLIVTALLALCFTVICILTFSGSTQWPW---KLVDALFWLVHAITH 143
N R + + KL +I L+ +V+ +L+ + W +L+ L L A++
Sbjct: 56 NERFKDMSLTYNKLVVICCETLSALNSVLLLLSCFNLHKNGWDRSELMILLDLLFTALSW 115
Query: 144 AVIAILI------VHEKKFEAVTHPLSLRIYWVANFIIVSLFTTSGIIRLVSFETAQFCS 197
I+ I H++KF P+ LR++WV F+ S + I L +
Sbjct: 116 GAISFYIRSQFTYSHDQKF-----PILLRVWWVLYFMF-SCYRLLVDIALYKKQELVSVH 169
Query: 198 LKLDDIVSIVSFPLLTVLLFIAIRGSTGIAVNSD-SEPGMD--EKTKLYEPLLSKSD--- 251
L L D+++ VS L + +G G +N EP ++ E + L K++
Sbjct: 170 LLLSDVLA-VSVGLFLCYSCLQKQGQ-GERINLLLEEPLLNGAESSAATSVQLDKAEDDE 227
Query: 252 VVSGFASASILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFESK--WPK 309
VV+ F++A LS + WM+PL+ G + + +++P + RAE++ +F SK W
Sbjct: 228 VVTPFSNAGFLSHVSFSWMSPLIVLGNEKIIDSEDVPQVDNSDRAEKLFWIFRSKLEWDD 287
Query: 310 PHEKCK-HPVRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEG 368
+ + + L W+++ + A V YV P L+ FV + +G+ +G
Sbjct: 288 GERRITTYKLIKALFFSVWRDILLSTLFAFVYTVSCYVAPYLMDTFVQYLNGQRQYSNQG 347
Query: 369 YYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQI 428
LV VAK VE + + F QK G+ +R L++ +Y KGL L C ++Q H G+I
Sbjct: 348 VVLVTTFFVAKLVECQARRNWYFRLQKAGIGMRSVLVSMIYEKGLTLPCYSKQGHTSGEI 407
Query: 429 VNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASXXXXXXXXXXXXXXXXXX 488
+N M VDA+++S +H W++ LQIS+AL++LY LG
Sbjct: 408 INLMTVDAERISAFSWYMHDPWILVLQISLALLILYRSLGLGSIAAFAATFLVMLGNIPL 467
Query: 489 XKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFM 548
K +FQ N+M+++D+RMK T+E L MR++K Q WE F +IL R E GWL KF+
Sbjct: 468 AKLEEKFQGNLMESKDNRMKKTSEALLNMRILKLQGWEMKFLHKILDLRGIEAGWLKKFV 527
Query: 549 YSISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMIS 608
Y+ + V+W+ P +S F +L +PL++G + F+ILQ PI P ++
Sbjct: 528 YNSAAISSVLWAAPSFVSATAFGACMLLKIPLESGKIIAALATFRILQTPIYKLPDTISM 587
Query: 609 LSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINL 668
+ Q +SL R+ ++ +L + +ER+ + VEV +G FSWDD + LK+I
Sbjct: 588 IVQTKVSLDRIATFLCLDDLQQDGMERLPSGSSKMDVEVSNGAFSWDDSSPIPTLKDIRF 647
Query: 669 EIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENI 728
+I G AI GTVGSGKSSLL+SILGE+ KISG +KVCG AY+AQ+ WIQ+G +EENI
Sbjct: 648 KIPHGMNIAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEENI 707
Query: 729 LFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDC 788
LFG PM R Y V+ C L KDLE+ + DQT IGERGINLSGGQKQRIQ+ARA+YQD
Sbjct: 708 LFGKPMQREWYQRVLEACSLNKDLEVFPFRDQTVIGERGINLSGGQKQRIQIARALYQDA 767
Query: 789 DIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQ 848
DIYL DD FSAVDAHTGS +FKE + G L+ KT+I VTHQ++FL DLILVM++G I Q
Sbjct: 768 DIYLFDDPFSAVDAHTGSHLFKEVLLGLLRNKTVIYVTHQLEFLPEADLILVMKDGRITQ 827
Query: 849 SGRYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENK 908
+G+YN +L SG DF LV AH ++ V+ + + T K +++ N E K
Sbjct: 828 AGKYNEILESGTDFMELVGAHTDALAAVDSYEKGSASAQSTTSKESKVS------NDEEK 881
Query: 909 SVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAG 968
E S KG +L++EEERE GKVG VY+ Y AYG V +L++ + +Q +
Sbjct: 882 QEEDLPSPKG--QLVQEEEREKGKVGFTVYQKYMKLAYGGALVPIILVVQILFQVLNIGS 939
Query: 969 DYWLSYET--SEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQI 1026
+YW+++ T S+D + S I VY A S ++VRA G K A F+Q+
Sbjct: 940 NYWMAWVTPVSKDVKPLVSGSTLILVYVFLATASSFCILVRAMLSAMTGFKIATELFNQM 999
Query: 1027 LRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPF-FVGITVAMYITLLGIFIITCQY 1085
I A MSFFD TP GRIL+RASTDQ+ +DL LP F + +A + +LGI + Q
Sbjct: 1000 HFRIFRASMSFFDATPIGRILNRASTDQSAVDLRLPSQFSNLAIAA-VNILGIIGVMGQV 1058
Query: 1086 AWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQ 1145
AW + + IP+ A WYR YY+S +REL RL I+++P++ HFSE++SG+ TIR+F ++
Sbjct: 1059 AWQVLIVFIPVIAACTWYRQYYISAARELARLSGISRSPLVQHFSETLSGITTIRSFDQE 1118
Query: 1146 TTFYQENVNRVNGNL-RMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEX 1204
F + ++ R+N R+ FH + EWL FRL+LL + F L+ + ++ +P +I P
Sbjct: 1119 PRF-RTDIMRLNDCYSRLRFHAISAMEWLCFRLDLLSTVAFALSLVILVSVPEGVINPSF 1177
Query: 1205 XXXXXXXXXXXXXXXFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPA 1264
I+ C +EN+M+SVER+ Q+ +IPSE + +E P +WP
Sbjct: 1178 AGLAVTYALNLNSLQATLIWTLCDLENKMISVERMLQYIDIPSEPSLVIESTRPEKSWPC 1237
Query: 1265 HGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXX 1324
G + + +LQVRY + P+VL+G+T + GG K G+VGRTG GKSTLIQ FR+VEP+
Sbjct: 1238 RGEITICNLQVRYGPHLPMVLRGLTCTFRGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAG 1297
Query: 1325 XXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLK 1384
RSR IIPQEP +FEGTVRSN+DP+ +Y+D++IW++L++CQL
Sbjct: 1298 EIRIDGINILTIGLHDLRSRLSIIPQEPTMFEGTVRSNLDPLEEYADDQIWEALDKCQLG 1357
Query: 1385 DVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 1444
D + K KLDS V+++G NWSVGQRQL+CLGRV+LK S++L +DEATASVD+ TD IQ
Sbjct: 1358 DEIRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKVLILDEATASVDTATDTLIQ 1417
Query: 1445 RIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479
+R+ F+ CT+I+IAHRI +V+D D V+++D GL
Sbjct: 1418 ETLRQHFSGCTVITIAHRISSVIDSDMVLLLDQGL 1452
|
|
| DICTYBASE|DDB_G0284867 abcC8 "ABC transporter C family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1130 (402.8 bits), Expect = 3.5e-215, Sum P(3) = 3.5e-215
Identities = 255/688 (37%), Positives = 388/688 (56%)
Query: 253 VSGFASASILSK-AFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFESKWPKPH 311
+S +A++ S+ FW W+N +L KG+K L+I ++P+L ++ +SE FE W +
Sbjct: 203 ISKEVNANLFSRLTFW-WINSVLVKGHKKALEISDVPTLGEIDQSILLSEKFEKAWEEQL 261
Query: 312 EKCKHPVRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSS--FYEGY 369
+K + L + F A I++ +++VGP L++R + F + S Y+G
Sbjct: 262 KKPNPSLPWALAKAFGPHFYIAALFKIIQDLLIFVGPTLLKRVLGFVESRDGSQDTYDGL 321
Query: 370 YLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIV 429
L+ +A V+ HQ+ ++GM +R ++T++Y+K L+ S R+ +G+IV
Sbjct: 322 IYALLYFLAPVVQSLLLHQYFHRCYRVGMWLRSAVVTAVYKKALKTSL--REGTTIGEIV 379
Query: 430 NYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASXXXXXXXXXXXXXXXXXXX 489
N M+VDAQ+ D+ LH +W PLQ++++L+LLY L AS
Sbjct: 380 NLMSVDAQKFMDLCPYLHMIWSAPLQLAISLVLLYRILNASVFAGLGIMLVMIPINLAIS 439
Query: 490 KRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMY 549
+ Q MK +D R KA NE+LN ++VIK +WE F + R E + Y
Sbjct: 440 NLAKKRQTISMKLKDRRTKAVNEVLNGIKVIKLYSWEQSFMDHVNEIRNKELDVMKAIKY 499
Query: 550 SISGNIIVMWS-TPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMIS 608
I G +++WS +PV +S TF +L G L A F ++F ++Q PI P + S
Sbjct: 500 -IQGFSLLLWSMSPVFVSVSTFTVYILTGQVLSATQAFPALSLFNVMQFPINMLPSVVSS 558
Query: 609 LSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINL 668
+ +A +S+ARL K++L ++L VE + IAV++ + W E + L +INL
Sbjct: 559 IIEASVSVARLQKFLLKKDLDPNVVEHHIN-EPGIAVKIDNATLEW--EPNKPILHDINL 615
Query: 669 EIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENI 728
IKKG+L AIVG VGSGKSS+++S++G++ K G V V G+ A V+Q +WIQN T++ NI
Sbjct: 616 TIKKGELVAIVGQVGSGKSSIVSSLVGDLDKTKGTVAVNGSVALVSQQAWIQNATLKNNI 675
Query: 729 LFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDC 788
LF +N+ KY VV+ CCLE D++++ GDQTEIGE+GINLSGGQKQR+ +ARAVY +
Sbjct: 676 LFAKELNQDKYQSVVQACCLEPDIKILPGGDQTEIGEKGINLSGGQKQRVSIARAVYNNA 735
Query: 789 DIYLLDDVFSAVDAHTGSDIFKECVR---GALKGKTIILVTHQVDFLHNVDLILVMREGM 845
DIY+ DD SAVDAH G IFK + G L KT ILVTH V +L VD I++M++G
Sbjct: 736 DIYIFDDPLSAVDAHVGKAIFKNVLSNQDGILCNKTRILVTHAVHYLPYVDRIILMKDGR 795
Query: 846 IVQSGRYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANG 905
IV+ G +N L+ +G F L++ E +L + + P +S SN Q G
Sbjct: 796 IVEEGDFNTLIEAGSHFTELMSHDEQQQQLQQ--QQAPDKSSD---------SNEQIGGG 844
Query: 906 ENKSVEQSNSDKGNSKLIKEEERETGKV 933
+NK E N+++ N + E E KV
Sbjct: 845 DNK--ESENNEEQNEEEEGENENLLEKV 870
|
|
| UNIPROTKB|Q92887 ABCC2 "Canalicular multispecific organic anion transporter 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1038 (370.5 bits), Expect = 2.4e-212, Sum P(3) = 2.4e-212
Identities = 246/678 (36%), Positives = 373/678 (55%)
Query: 818 KGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVE 877
KG L+ + +F N+ L G ++ ++ D+G + + E +
Sbjct: 842 KGSYSALLAKKGEFAKNLKTFL-RHTGPEEEATVHDGSEEEDDDYGLISSVEEIPEDAAS 900
Query: 878 VGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSD---------KGNSKLIKEEER 928
+ TM NS + S SN + S++ N + KG KLIK+E
Sbjct: 901 I--TMRRENSFRRTLSRSSRSNGRHLKSLRNSLKTRNVNSLKEDEELVKGQ-KLIKKEFI 957
Query: 929 ETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSED---HSMSFN 985
ETGKV +Y Y +A G + + ++L V + + + WLS TS+ +S +
Sbjct: 958 ETGKVKFSIYLEYL-QAIGLFSIFFIILAFVMNSVAFIGSNLWLSAWTSDSKIFNSTDYP 1016
Query: 986 PS---LFIGVYGSTAVLSMVILVVRAYFVTHVG-LKTAQIFFSQILRSILHAPMSFFDTT 1041
S + +GVYG+ L+ I V A+F + G + + I Q+L +IL APM FFDTT
Sbjct: 1017 ASQRDMRVGVYGALG-LAQGIFVFIAHFWSAFGFVHASNILHKQLLNNILRAPMRFFDTT 1075
Query: 1042 PSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTI-FLVIPLAWAN 1100
P+GRI++R + D + +D LP + + ++ ++ ++ C A P +VIPL
Sbjct: 1076 PTGRIVNRFAGDISTVDDTLPQSLRSWITCFLGIISTLVMICM-ATPVFTIIVIPLGIIY 1134
Query: 1101 YWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNL 1160
+ +Y+STSR+L RLDS+T++P+ HFSE++SG+ IRAF Q F + N R++ N
Sbjct: 1135 VSVQMFYVSTSRQLRRLDSVTRSPIYSHFSETVSGLPVIRAFEHQQRFLKHNEVRIDTNQ 1194
Query: 1161 RMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXXF 1220
+ F SN WL RLEL+G+ T + L M++ ++ +
Sbjct: 1195 KCVFSWITSNRWLAIRLELVGNLTVFFSALMMVIYRDTL-SGDTVGFVLSNALNITQTLN 1253
Query: 1221 WAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSN 1280
W + M+ +E +V+VERI ++T++ +EA W + D+ PPP+WP+ G + + QVRYR
Sbjct: 1254 WLVRMTSEIETNIVAVERITEYTKVENEAPW-VTDKRPPPDWPSKGKIQFNNYQVRYRPE 1312
Query: 1281 TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXX 1340
LVL+GIT I EKIGVVGRTG+GKS+L FR++E +
Sbjct: 1313 LDLVLRGITCDIGSMEKIGVVGRTGAGKSSLTNCLFRILEAAGGQIIIDGVDIASIGLHD 1372
Query: 1341 XRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVAD 1400
R + IIPQ+P+LF G++R N+DP YSDEEIWK+LE LK VA+ L V +
Sbjct: 1373 LREKLTIIPQDPILFSGSLRMNLDPFNNYSDEEIWKALELAHLKSFVASLQLGLSHEVTE 1432
Query: 1401 SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIA 1460
+G N S+GQRQLLCLGR +L+ S++L +DEATA+VD +TD IQ I+ EFA CT+I+IA
Sbjct: 1433 AGGNLSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETDNLIQTTIQNEFAHCTVITIA 1492
Query: 1461 HRIPTVMDCDRVIVVDAG 1478
HR+ T+MD D+V+V+D G
Sbjct: 1493 HRLHTIMDSDKVMVLDNG 1510
|
|
| MGI|MGI:1352447 Abcc2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1042 (371.9 bits), Expect = 3.8e-211, Sum P(3) = 3.8e-211
Identities = 235/626 (37%), Positives = 357/626 (57%)
Query: 861 DFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGNS 920
D +L E S+ + ++ SG+ + KS + + ++ N NK E KG
Sbjct: 895 DAASLTMRRENSLRRT-LSRSSRSGS--RRGKSLKSSLKIKSVNALNKKEEVV---KGQ- 947
Query: 921 KLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDH 980
KLIK+E ETGKV +Y Y +A GWW ++ +++ V + + + WLS TS+
Sbjct: 948 KLIKKEFVETGKVKFSIYLKYL-QAVGWWSLLFIVIFYVLNYVAFIGTNLWLSAWTSDSE 1006
Query: 981 SMSF---NPS---LFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAP 1034
+ +PS + IGV+G+ + + L+ + + + ++ Q+L +IL AP
Sbjct: 1007 KQNGTDNSPSQRDMRIGVFGALGIAQGIFLLSSSLWSIYACRNASKTLHRQLLTNILRAP 1066
Query: 1035 MSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPT-IFLV 1093
MSFFDTTP+GRI++R + D + +D LP + + + ++ ++ C A P I ++
Sbjct: 1067 MSFFDTTPTGRIVNRFAGDISTVDDTLPQTLRSWLLCFFGIVSTLVMICM-ATPIFIIII 1125
Query: 1094 IPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENV 1153
IPL+ + +Y++TSR+L RLDS+TK+P+ HFSE++SG+ IRAF Q F +
Sbjct: 1126 IPLSILYVSVQVFYVATSRQLRRLDSVTKSPIYSHFSETVSGLPVIRAFEHQQRFLANSE 1185
Query: 1154 NRVNGNLRMDFHNNGSNEWLGFRLELLGSF-TFCLATLFMILLPSSIIKPEXXXXXXXXX 1212
+++ N + F SN WL RLEL+G+ FC A L +I S + +
Sbjct: 1186 KQIDTNQKCVFSWITSNRWLAIRLELVGNLIVFCSALLLVIYKNS--LTGDTVGFVLSNA 1243
Query: 1213 XXXXXXXFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLID 1272
W + M+ VE +V+VERI ++ + +EA W + D+ PP +WP G + +
Sbjct: 1244 LNITQTLNWLVRMTSEVETNIVAVERINEYINVDNEAPW-VTDKKPPADWPKKGEIQFNN 1302
Query: 1273 LQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXX 1332
QVRYR LVLKGIT +I EK+GVVGRTG+GKS+L FR++E +
Sbjct: 1303 YQVRYRPELDLVLKGITCNIKSTEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDGID 1362
Query: 1333 XXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPD 1392
R R IIPQ+P+LF G +R N+DP +YSDEEIW++LE LK VA
Sbjct: 1363 IASIGLHDLRGRLTIIPQDPILFSGNLRMNLDPFNKYSDEEIWRALELAHLKSFVAGLQL 1422
Query: 1393 KLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA 1452
L V + GDN S+GQRQLLCLGR +L+ S++L +DEATA+VD +TD+ IQ IR EF+
Sbjct: 1423 GLLHEVTEGGDNLSIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRNEFS 1482
Query: 1453 ACTIISIAHRIPTVMDCDRVIVVDAG 1478
CT+I+IAHR+ T+MD D+++V+D+G
Sbjct: 1483 QCTVITIAHRLHTIMDSDKIMVLDSG 1508
|
|
| UNIPROTKB|F1MIP7 ABCC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1020 (364.1 bits), Expect = 8.0e-211, Sum P(4) = 8.0e-211
Identities = 222/575 (38%), Positives = 332/575 (57%)
Query: 911 EQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDY 970
E+ +G KLIK+E +TGKV +Y Y +A GW +V +LL V + + + +
Sbjct: 939 EEEEPVRGQ-KLIKKEFVQTGKVKFSIYLKYL-QAIGWCSIVFILLGFVIYYVAFIGSNL 996
Query: 971 WLSYETSED--HSMSFNPS----LFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFS 1024
WLS TS+ ++ + PS L +GVYG+ V + + + + + + I
Sbjct: 997 WLSAWTSDSKIYNGTNYPSSQRDLRVGVYGALGVAQGLFVFIANIWSVYGCNHASNILHK 1056
Query: 1025 QILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQ 1084
Q+L +IL APMSFFDTTP GRI++R + D +D LP + V ++ ++ ++ C
Sbjct: 1057 QLLNNILRAPMSFFDTTPIGRIVNRFAGDLFTVDDTLPMSLRSCVLCFLGIISTLVMIC- 1115
Query: 1085 YAWPT-IFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFG 1143
A P + ++IPL + +Y++TSR+L RLDS+T++P+ HFSE++SG+ IRAF
Sbjct: 1116 LATPIFVVVIIPLGIIYVSVQIFYVATSRQLRRLDSVTRSPIYSHFSETVSGLSVIRAFE 1175
Query: 1144 KQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPE 1203
Q F +++ ++ N + F SN WL RLEL+G+ A+L M++ +++ +
Sbjct: 1176 HQQRFLKQSETAIDTNQKCVFSWITSNRWLAVRLELIGNLIVFFASLMMVIYRNNL-SGD 1234
Query: 1204 XXXXXXXXXXXXXXXXFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWP 1263
W + M+ +E +V+VERI ++ + +EA W + D+ PP WP
Sbjct: 1235 TVGFVLSNALNITQTLNWLVRMTSEIETNIVAVERITEYINVENEAPW-VTDKRPPEGWP 1293
Query: 1264 AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSX 1323
+ G + + QVRYR LVLKGIT I EKIGVVGRTG+GKS+L FR++E +
Sbjct: 1294 SKGEIQFSNYQVRYRPELDLVLKGITCDIKSTEKIGVVGRTGAGKSSLTNCLFRILEAAG 1353
Query: 1324 XXXXXXXXXXXXXXXXXXRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQL 1383
R + IIPQ+P+LF G++R N+DP YSDEEIWK+LE L
Sbjct: 1354 GQITIDGVDIASIGLHDLREKLTIIPQDPILFSGSLRMNLDPFNNYSDEEIWKALELSHL 1413
Query: 1384 KDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI 1443
K VA L V + GDN S+GQRQLLCL R +L+ S++L MDEATA+VD +TD I
Sbjct: 1414 KSFVAGLQAGLSYEVTEGGDNLSIGQRQLLCLARALLRKSKILIMDEATAAVDLETDQLI 1473
Query: 1444 QRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
Q I+ EF+ CT I+IAHR+ T+MD D+V+V+D+G
Sbjct: 1474 QTTIQTEFSHCTTITIAHRLHTIMDSDKVMVLDSG 1508
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|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q10185 | ABC2_SCHPO | 3, ., 6, ., 3, ., - | 0.3656 | 0.8221 | 0.8227 | yes | no |
| Q9LZJ5 | AB14C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.7048 | 0.9756 | 0.9376 | no | no |
| Q54JR2 | ABCC3_DICDI | No assigned EC number | 0.3668 | 0.8066 | 0.8449 | yes | no |
| Q7DM58 | AB4C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.7109 | 0.9905 | 0.9663 | yes | no |
| B2RX12 | MRP3_MOUSE | No assigned EC number | 0.3320 | 0.9418 | 0.9146 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3.44 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_fgenesh4_pg.C_LG_II1710 | multidrug resistance protein ABC transporter family (1509 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1479 | |||
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-175 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-124 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-113 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-91 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 4e-86 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-81 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-76 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 8e-67 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 4e-64 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-59 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-59 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-59 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 7e-59 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 3e-56 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-53 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-53 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-53 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 9e-53 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 9e-53 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-51 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-49 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-47 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 9e-47 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-45 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-45 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 7e-45 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 6e-44 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 8e-44 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-42 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-41 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-41 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-40 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-40 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-39 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-39 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-39 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-39 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-38 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-37 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-37 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-37 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-36 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-36 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 9e-36 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-35 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 8e-35 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-33 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-33 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-33 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-33 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-33 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 6e-33 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-32 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 8e-32 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-31 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-31 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 5e-31 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 9e-31 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 6e-30 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-30 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 7e-30 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 8e-30 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-29 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-29 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-29 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-29 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-29 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 8e-29 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-28 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-28 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-28 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 9e-28 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-27 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-27 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-27 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-27 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-27 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 6e-27 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-26 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-26 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-26 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 5e-26 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 5e-26 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 5e-26 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 6e-26 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-25 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-25 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-25 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 3e-25 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-25 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-25 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 6e-25 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-25 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 9e-25 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-24 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-24 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-24 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-24 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-24 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-24 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-24 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-24 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-24 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-24 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 9e-24 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 9e-24 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 9e-24 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-23 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-23 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-23 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-23 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-23 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-23 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 4e-23 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-23 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 6e-23 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 9e-23 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-22 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-22 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-22 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-22 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-22 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-22 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-22 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-22 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 7e-22 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 7e-22 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 8e-22 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 8e-22 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 8e-22 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 9e-22 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-21 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-21 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-21 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-21 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-21 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-21 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-21 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-21 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-21 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 4e-21 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 7e-21 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 8e-21 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 9e-21 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-20 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-20 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-20 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-20 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-20 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-20 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 5e-20 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 8e-20 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-19 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-19 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-19 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-19 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-19 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-19 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-19 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-19 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-19 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 4e-19 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 6e-19 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 6e-19 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 6e-19 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 7e-19 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 9e-19 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-18 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-18 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-18 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-18 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-18 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-18 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-18 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-18 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-18 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-18 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-18 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-18 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 4e-18 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-18 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-18 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 7e-18 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 7e-18 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 8e-18 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 9e-18 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 9e-18 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-17 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-17 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-17 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-17 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-17 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-17 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-17 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-17 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-17 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 8e-17 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 9e-17 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-16 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-16 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-16 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-16 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-16 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-16 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-16 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-16 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-16 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-16 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-16 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-16 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 4e-16 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 4e-16 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-16 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 5e-16 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-16 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 5e-16 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 5e-16 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 6e-16 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 7e-16 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 8e-16 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-16 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 9e-16 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-15 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-15 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-15 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-15 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-15 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-15 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-15 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-15 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-15 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 3e-15 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 3e-15 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-15 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-15 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 4e-15 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 5e-15 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 9e-15 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-14 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-14 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 1e-14 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-14 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-14 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-14 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-14 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-14 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-14 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-14 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-14 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-14 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-14 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-14 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-14 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-14 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 4e-14 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-14 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-14 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 4e-14 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-14 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-14 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 5e-14 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 5e-14 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-14 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 5e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 5e-14 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 6e-14 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 6e-14 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 6e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 7e-14 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 7e-14 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 7e-14 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 8e-14 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 8e-14 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 8e-14 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 8e-14 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 9e-14 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-13 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-13 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-13 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-13 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-13 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 2e-13 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-13 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-13 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 3e-13 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-13 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-13 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-13 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-13 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-13 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-13 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 4e-13 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-13 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 5e-13 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-13 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 5e-13 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 5e-13 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 5e-13 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 7e-13 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 8e-13 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 8e-13 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 9e-13 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-12 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-12 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 1e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-12 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-12 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-12 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-12 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-12 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-12 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 3e-12 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-12 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 3e-12 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 3e-12 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 3e-12 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 3e-12 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-12 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 4e-12 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-12 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 5e-12 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 5e-12 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 5e-12 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 6e-12 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 6e-12 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 6e-12 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 6e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 7e-12 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 7e-12 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 7e-12 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 7e-12 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 8e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 8e-12 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-12 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 8e-12 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 8e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 9e-12 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 9e-12 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 9e-12 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-11 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-11 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-11 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-11 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-11 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-11 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-11 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-11 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-11 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-11 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-11 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-11 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-11 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-11 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-11 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-11 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-11 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-11 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-11 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 3e-11 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-11 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-11 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-11 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-11 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-11 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 4e-11 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 5e-11 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-11 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 5e-11 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 5e-11 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 6e-11 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 6e-11 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 6e-11 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 6e-11 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 6e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 7e-11 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 7e-11 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 7e-11 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 7e-11 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 7e-11 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 7e-11 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 8e-11 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 8e-11 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 8e-11 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 9e-11 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 9e-11 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 9e-11 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 9e-11 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-10 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-10 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-10 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 1e-10 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-10 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-10 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-10 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 1e-10 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-10 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-10 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-10 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-10 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-10 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-10 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-10 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 3e-10 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 3e-10 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-10 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-10 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-10 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-10 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-10 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 4e-10 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-10 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-10 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 5e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 5e-10 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 6e-10 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 6e-10 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 6e-10 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 7e-10 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 7e-10 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 7e-10 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 8e-10 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 9e-10 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-09 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-09 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-09 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-09 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-09 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 1e-09 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-09 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-09 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-09 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-09 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-09 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-09 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-09 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-09 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-09 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-09 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-09 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-09 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-09 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-09 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-09 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-09 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 3e-09 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-09 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-09 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-09 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-09 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-09 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 4e-09 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 5e-09 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 5e-09 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 5e-09 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 6e-09 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 6e-09 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 6e-09 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-09 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 6e-09 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 7e-09 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 7e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 7e-09 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 8e-09 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 8e-09 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 8e-09 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 9e-09 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 9e-09 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 9e-09 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-08 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-08 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-08 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-08 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-08 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-08 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-08 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-08 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-08 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-08 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-08 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-08 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-08 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-08 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-08 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-08 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-08 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-08 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-08 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-08 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-08 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-08 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 3e-08 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-08 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-08 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 4e-08 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 5e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-08 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 5e-08 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 5e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 6e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 6e-08 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 6e-08 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 7e-08 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 7e-08 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 8e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 9e-08 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-07 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-07 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-07 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-07 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-07 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-07 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-07 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-07 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-07 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-07 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-07 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 5e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-07 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 6e-07 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 7e-07 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 8e-07 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 8e-07 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-06 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-06 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-06 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 3e-06 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 3e-06 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-06 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-06 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 4e-06 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-06 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 4e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 5e-06 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 6e-06 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 6e-06 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 7e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 7e-06 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 8e-06 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 9e-06 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-05 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-05 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-05 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 1e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-05 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-05 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-05 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-05 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-05 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 3e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-05 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 5e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 5e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 6e-05 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 7e-05 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 8e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 9e-05 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 9e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-04 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 1e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-04 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-04 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-04 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-04 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-04 | |
| PRK00349 | 943 | PRK00349, uvrA, excinuclease ABC subunit A; Review | 2e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 2e-04 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 2e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-04 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 4e-04 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 4e-04 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 4e-04 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 4e-04 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 5e-04 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 5e-04 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 6e-04 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 8e-04 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 8e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 0.001 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 0.001 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.001 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 0.001 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 0.002 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 0.002 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 0.002 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 0.002 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 0.003 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 0.003 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.003 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.003 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.003 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 0.003 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 0.003 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 0.004 | |
| PRK00349 | 943 | PRK00349, uvrA, excinuclease ABC subunit A; Review | 0.004 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 0.004 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 0.004 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 908 bits (2348), Expect = 0.0
Identities = 458/1256 (36%), Positives = 699/1256 (55%), Gaps = 44/1256 (3%)
Query: 243 YEPLLSKSDVVSGFASASILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERMSEL 302
YE L + A+I S+ F+ WM PL+ GYK PL ++ L + E +
Sbjct: 217 YEELPGGEQICPER-HANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRS 275
Query: 303 FESKWPKPHEKCKHPVRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKS 362
F+ W + +K K + L F I +VGP+L+ ++ +
Sbjct: 276 FQKCWDEELKKPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLE-SMQNG 334
Query: 363 SSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQA 422
+ GY + V + V Q+ N ++G +R TL+ +++RK LRL+ R+
Sbjct: 335 EPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKK 394
Query: 423 HGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGIIGVM 482
G+I N M DA+ L + QLH +W P +I +A++LLY LG V +IG +
Sbjct: 395 FTSGKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLG------VASLIGSL 448
Query: 483 IFVVMGTKRNNRFQFNVMKN--------RDSRMKATNEMLNYMRVIKFQAWEDHFNKRIL 534
+ V+M + F + M+ D R+ NE+L M +K AWE+ F ++
Sbjct: 449 MLVLMFPIQT--FIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQ 506
Query: 535 SFRESEFGWLTKFMYSISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKI 594
+ R+ E W K + N ++ S PVL++ ++F L G L FT+ ++F +
Sbjct: 507 TVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAV 566
Query: 595 LQEPIRNFPQSMISLSQAMISLARLDKYMLSRELV---NESVERVEGCDDNIAVEVRDGV 651
L+ P+ P + A +SL RL++ +L+ E V N +E A+ +++G
Sbjct: 567 LRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLP-----AISIKNGY 621
Query: 652 FSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKIS-GKVKVCGTT 710
FSWD + L NINL++ G L AIVG+ G GK+SL++++LGE+ S V + GT
Sbjct: 622 FSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTV 681
Query: 711 AYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINL 770
AYV Q SWI N T+ +NILFG P + +Y + V L+ DL+++ GD TEIGERG+N+
Sbjct: 682 AYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNI 741
Query: 771 SGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVD 830
SGGQKQR+ +ARAVY + D+Y+ DD SA+DAH G +F +C++ L+GKT +LVT+Q+
Sbjct: 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLH 801
Query: 831 FLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKT 890
FL VD I+++ EGMI + G Y L N+G F L+ E VE +
Sbjct: 802 FLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSSK 861
Query: 891 PKSPQITSNLQEANGENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWG 950
P + +NL++ + K S +G S LIK+EERETG V V + Y G W
Sbjct: 862 PVANGNANNLKKDSSSKK-----KSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAW- 915
Query: 951 VVAVLLLS-VAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAY 1009
VV +L L V + ++ WLS T + + P + +Y + +++ ++ +Y
Sbjct: 916 VVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSY 975
Query: 1010 FVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITV 1069
++ L A+ +L SIL APMSFF T P GRI++R + D +ID + FV + +
Sbjct: 976 WLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFL 1035
Query: 1070 AMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHF 1129
LL F++ + +++ ++PL Y YY ST+RE+ RLDSIT++PV F
Sbjct: 1036 GQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQF 1095
Query: 1130 SESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLAT 1189
E+++G+ TIRA+ + N ++ N+R N SN WL RLE LG L
Sbjct: 1096 GEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTA 1155
Query: 1190 LFMILLPSSIIKPEN-------VGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQF 1242
F ++ + EN +GL LSY L++ +L + ++ EN + +VER+ +
Sbjct: 1156 SFAVMQNG---RAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTY 1212
Query: 1243 TEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVG 1302
++PSEA +E+ PPP WP+ G++ D+ +RYR P VL G++ I EK+G+VG
Sbjct: 1213 IDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVG 1272
Query: 1303 RTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSN 1362
RTG+GKS+++ FR+VE GRI+IDG DIS GL DLR GIIPQ PVLF GTVR N
Sbjct: 1273 RTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFN 1332
Query: 1363 IDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKH 1422
+DP +++D ++W+SLER LKDV+ LD+ V+++G+N+SVGQRQLL L R +L+
Sbjct: 1333 LDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392
Query: 1423 SRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
S++L +DEATA+VD +TDA IQ+ IREEF +CT++ IAHR+ T++DCDR++V+DAG
Sbjct: 1393 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAG 1448
|
Length = 1622 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 863 bits (2230), Expect = 0.0
Identities = 464/1298 (35%), Positives = 724/1298 (55%), Gaps = 83/1298 (6%)
Query: 257 ASASILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFESKWPKPHEKC-K 315
+SAS LS+ + W+ + GY+ PL+ ++ SL+ + +E + + W K +K K
Sbjct: 205 SSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKTRK 264
Query: 316 HPVRTT----------------------------------------LLRCFWKEVAFTAF 335
PV L + F +
Sbjct: 265 QPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFC 324
Query: 336 LAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQK 395
+ +M++GP ++ + F + + ++GY+ +L V ++ HQ+
Sbjct: 325 FKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFV 384
Query: 396 LGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQ 455
GM I+ ++ ++YRK L ++ SAR++ VG+IVN M+VDAQ+ D+ ++ +W PLQ
Sbjct: 385 SGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQ 444
Query: 456 ISVALILLYNCLGASVITTV-VGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEML 514
+ +AL L+ LG SV+ V V ++ V + VM K +Q MK++D+R+K NE+L
Sbjct: 445 VILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKT-YQVAHMKSKDNRIKLMNEIL 503
Query: 515 NYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMWSTPVLISTLTFATAL 574
N ++V+K AWE F ++ R+ E L K Y + TP L++ +TFA +
Sbjct: 504 NGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYV 563
Query: 575 LFGVP--LDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNES 632
LDA F + +F IL+ P+ P + S+ QA +SL RL ++ EL +S
Sbjct: 564 TVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDS 623
Query: 633 VER--VEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLL 690
+ER ++ + N ++ V + F+W + L I I +G L A+VG VG GKSSLL
Sbjct: 624 IERRTIKPGEGN-SITVHNATFTWA-RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLL 681
Query: 691 ASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEK 750
+++L EM K+ G V + G+ AYV Q +WIQN ++ ENILFG +N Y +V+ C L
Sbjct: 682 SALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLP 741
Query: 751 DLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFK 810
DLE++ GD+TEIGE+G+NLSGGQKQR+ LARAVY + DIYL DD SAVDAH G IF+
Sbjct: 742 DLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 801
Query: 811 ECV--RGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALV-- 866
+ G LK KT ILVTH + +L VD+I+VM G I + G Y LL F +
Sbjct: 802 HVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRT 861
Query: 867 -AAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGEN--KSVEQSNSDKGNS--- 920
A E L + + SG K K + + + G+ + + S+SD G+
Sbjct: 862 YAPDEQQGHLEDSWTALVSG-EGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRH 920
Query: 921 -----------------KLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQG 963
KL++ ++ +TG+V L VY Y +A G + + L V
Sbjct: 921 HGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDY-MKAIGLFITFLSIFLFVCNHV 979
Query: 964 SLMAGDYWLSYETSED--HSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQI 1021
S +A +YWLS T + + N SL + VYG+ +L + + V+ G++ +++
Sbjct: 980 SALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRV 1039
Query: 1022 FFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFII 1081
+L + L +PMSFF+ TPSG +++R S + +D +P + + + ++G I+
Sbjct: 1040 LHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIV 1099
Query: 1082 TCQYAWPTIFLVI-PLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIR 1140
A P ++I PL ++ + +Y+++SR+L RL+S++++PV HF+E++ GV IR
Sbjct: 1100 IL-LATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIR 1158
Query: 1141 AFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSII 1200
AF +Q F ++ +V+ N + + + +N WL RLE +G+ A LF ++ S+
Sbjct: 1159 AFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVISRHSL- 1217
Query: 1201 KPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPP 1260
VGLS+SY L + L W + MS +E +V+VER+K+++E EA W++++ PP
Sbjct: 1218 SAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPS 1277
Query: 1261 NWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE 1320
WP G V+ + +RYR + LVL+ I ++IHGGEK+G+VGRTG+GKS+L FR+ E
Sbjct: 1278 GWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE 1337
Query: 1321 PSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLER 1380
+ G IIIDG++I+ +GLHDLR + IIPQ+PVLF G++R N+DP QYSDEE+W +LE
Sbjct: 1338 SAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALEL 1397
Query: 1381 CQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTD 1440
LK V+A PDKLD A+ G+N SVGQRQL+CL R +L+ +++L +DEATA+VD +TD
Sbjct: 1398 AHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETD 1457
Query: 1441 AEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
IQ IR +F CT+++IAHR+ T+MD RVIV+D G
Sbjct: 1458 NLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKG 1495
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 783 bits (2024), Expect = 0.0
Identities = 428/1235 (34%), Positives = 675/1235 (54%), Gaps = 36/1235 (2%)
Query: 259 ASILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFESKWPKPHEKCK--- 315
ASI S+ ++ WM PL+ GY+ P+ ++ L + E + + F+ W + + K
Sbjct: 232 ASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESRRPKPWL 291
Query: 316 -HPVRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLI 374
+ +L FW I +VGPV++ + + + + GY +
Sbjct: 292 LRALNNSLGGRFW----LGGIFKIGHDLSQFVGPVILSHLLQ-SMQEGDPAWVGYVYAFL 346
Query: 375 LLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAV 434
+ V Q+ N ++G +R TL+ +++ K LRL+ AR+ G++ N +
Sbjct: 347 IFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITT 406
Query: 435 DAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGIIGVMIFVVMG------ 488
DA L + QLH +W P +I V+++LLY LG V + G +I ++
Sbjct: 407 DANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLG------VASLFGSLILFLLIPLQTLI 460
Query: 489 TKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFM 548
++ + ++ D R+ NE+L M +K AWE F RI R E W K
Sbjct: 461 VRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQ 520
Query: 549 YSISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMIS 608
+ N ++ S PV+++ ++F +L G L FT+ ++F +L+ P+ P +
Sbjct: 521 LLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQ 580
Query: 609 LSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINL 668
+ A +SL R+++ +LS E + ++ A+ +++G FSWD + + L +INL
Sbjct: 581 VVNANVSLQRIEELLLSEERILAQNPPLQ--PGAPAISIKNGYFSWDSKTSKPTLSDINL 638
Query: 669 EIKKGDLTAIVGTVGSGKSSLLASILGEM-HKISGKVKVCGTTAYVAQTSWIQNGTIEEN 727
EI G L AIVG G GK+SL++++LGE+ H + V + G+ AYV Q SWI N T+ EN
Sbjct: 639 EIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVREN 698
Query: 728 ILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD 787
ILFG +Y + V L+ DL+++ D TEIGERG+N+SGGQKQR+ +ARAVY +
Sbjct: 699 ILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSN 758
Query: 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIV 847
DIY+ DD SA+DAH +F C++ LKGKT +LVT+Q+ FL +D I+++ EGMI
Sbjct: 759 SDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIK 818
Query: 848 QSGRYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGEN 907
+ G + L SG F L+ EV N K P +T ++ E N
Sbjct: 819 EEGTFAELSKSGSLFKKLMENAGKMDATQEVNTN--DENILK--LGPTVTIDVSERNL-- 872
Query: 908 KSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMA 967
S +Q +G S L+K+EERETG + +V Y G W V+ +L+ + + ++
Sbjct: 873 GSTKQGK--RGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVS 930
Query: 968 GDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQIL 1027
WLS T + S++P +I VY + + ++++ L A+ +L
Sbjct: 931 SSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAML 990
Query: 1028 RSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAW 1087
SIL APM FF T P+GR+++R S D +ID + + + + LL F + +
Sbjct: 991 NSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVST 1050
Query: 1088 PTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTT 1147
+++ ++PL Y YY STSRE+ RLDS+T++P+ F E+++G+ +IRA+
Sbjct: 1051 ISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDR 1110
Query: 1148 FYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMIL----LPSSIIKPE 1203
+ N ++ N+R N SN WL RLE LG L F +L +
Sbjct: 1111 MAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFAS 1170
Query: 1204 NVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWP 1263
+GL LSY L++ +L + + EN + SVER+ + ++PSEA +E+ P WP
Sbjct: 1171 TMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWP 1230
Query: 1264 AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSG 1323
+ G++ D+ +RYR P VL G++ + EK+GVVGRTG+GKS+++ FR+VE
Sbjct: 1231 SRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK 1290
Query: 1324 GRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQL 1383
GRI+ID D++ GL DLR IIPQ PVLF GTVR NIDP +++D ++W++LER +
Sbjct: 1291 GRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHI 1350
Query: 1384 KDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI 1443
KDV+ P LD+ V++ G+N+SVGQRQLL L R +L+ S++L +DEATASVD +TD+ I
Sbjct: 1351 KDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI 1410
Query: 1444 QRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
QR IREEF +CT++ IAHR+ T++DCD+++V+ +G
Sbjct: 1411 QRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSG 1445
|
Length = 1495 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 565 bits (1457), Expect = e-175
Identities = 288/872 (33%), Positives = 442/872 (50%), Gaps = 83/872 (9%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNG 722
L+++++ + +G LT ++G GSGKS+LL S+L + G+V + AYV Q +WI N
Sbjct: 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNA 735
Query: 723 TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLAR 782
T+ NILF + A+ + VRV LE DL + G +TEIGE+G+NLSGGQK R+ LAR
Sbjct: 736 TVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLAR 795
Query: 783 AVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMR 842
AVY + D+YLLDD SA+DAH G + +EC GAL GKT +L THQV + D ++ +
Sbjct: 796 AVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALG 855
Query: 843 EGMIVQSGRYNALLNSGM-------------DFGALVAAHETSMELVEVGKTMPSGNSPK 889
+G + SG + + + A ++ G K
Sbjct: 856 DGRVEFSGSSADFMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAK 915
Query: 890 TPKSPQITSNLQEANGENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYG-- 947
G + + + D +L+ EE+ +G V Y Y G
Sbjct: 916 -------------QEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLH 962
Query: 948 WWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVR 1007
G VL + ++ WLS ++ +S + ++ VY +L + +R
Sbjct: 963 AAG--FVLATFAVTELVTVSSGVWLSMWSTRSFKLS--AATYLYVYLGIVLLGTFSVPLR 1018
Query: 1008 AYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLP----- 1062
+ + ++ +LRS+ MSFFDTTP GRIL+R S D +D LP
Sbjct: 1019 FFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLY 1078
Query: 1063 ---FFVGITVAMYITLLGIFIITCQYAWP-TIFLVIPLAWANYWYRGYYLSTSRELTRLD 1118
I ++ +T + P + ++P + Y +Y S +RE+ R+
Sbjct: 1079 LLQCLFSICSSILVTS---------ASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIK 1129
Query: 1119 SITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLE 1178
S+ K+PV E++ G TI A+GK QE + R++ + N +N WLG R+E
Sbjct: 1130 SVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVE 1189
Query: 1179 LLGS---FTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVS 1235
L + L + +L ++ + V LSL+ + L W + VE M S
Sbjct: 1190 FLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNS 1249
Query: 1236 VERIKQFT-EIPSEAAWKMEDRL-----------------------PPPNWPAH----GN 1267
VER+ +T E+P E ++++ + P P H G+
Sbjct: 1250 VERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAP-HPVQAGS 1308
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+ +Q+RYR PLVL+G++ I EK+G+VGRTGSGKSTL+ F R+VE GG I
Sbjct: 1309 LVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIR 1368
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVV 1387
++G +I GL +LR +F +IPQ+PVLF+GTVR N+DP + S E+W +LE L++ V
Sbjct: 1369 VNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERV 1428
Query: 1388 AAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKH-SRLLFMDEATASVDSQTDAEIQRI 1446
A++ + +DS V + G N+SVGQRQL+C+ R +LK S + MDEATA++D D +IQ
Sbjct: 1429 ASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT 1488
Query: 1447 IREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
+ F+A T+I+IAHR+ TV D++IV+D G
Sbjct: 1489 VMSAFSAYTVITIAHRLHTVAQYDKIIVMDHG 1520
|
Length = 1560 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 384 bits (988), Expect = e-124
Identities = 126/213 (59%), Positives = 169/213 (79%)
Query: 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGR 1325
G+++ ++ +RYR N P VLK I+ SI GEK+G+VGRTGSGKS+L+ FRLVE S G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 1326 IIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKD 1385
I+IDG+DIS +GLHDLRSR IIPQ+PVLF GT+RSN+DP G+YSDEE+W++LER LK+
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 1386 VVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQR 1445
V + P LD++V + G+N SVGQRQLLCL R +L+ S++L +DEATASVD +TDA IQ+
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 1446 IIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
IRE F CT+++IAHR+ T++D DR++V+D G
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKG 213
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 353 bits (908), Expect = e-113
Identities = 121/203 (59%), Positives = 147/203 (72%), Gaps = 3/203 (1%)
Query: 645 VEVRDGVFSWDDENGEE--CLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISG 702
+ V D F+WD E LK+INLE+ KG+L AIVG VGSGKSSLL+++LGE+ K+SG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 703 KVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTE 762
V V G+ AYV+Q WIQNGTI ENILFG P + +Y +V++ C LE DLE++ GD TE
Sbjct: 61 SVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTE 120
Query: 763 IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKT 821
IGE+GINLSGGQKQRI LARAVY D DIYLLDD SAVDAH G IF+ C+ G L KT
Sbjct: 121 IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKT 180
Query: 822 IILVTHQVDFLHNVDLILVMREG 844
ILVTHQ+ L + D I+V+ G
Sbjct: 181 RILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 293 bits (753), Expect = 2e-91
Identities = 113/217 (52%), Positives = 148/217 (68%), Gaps = 18/217 (8%)
Query: 1262 WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP 1321
WP HG +++ +L VRY + P VLK ++ + GEKIG+VGRTG+GKSTLI FR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 1322 SGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERC 1381
G+I IDGIDIS + L DLRS IIPQ+P LF GT+RSN+DP +YSDEEI+ +L
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-- 118
Query: 1382 QLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDA 1441
V++ G N S GQRQLLCL R +LK R+L +DEATAS+D TDA
Sbjct: 119 ----------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 1442 EIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
IQ+ IREEF TI++IAHR+ T++D D+++V+DAG
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 292 bits (750), Expect = 4e-86
Identities = 148/543 (27%), Positives = 250/543 (46%), Gaps = 30/543 (5%)
Query: 949 WGVVAVLLLSVAWQGSLMAGDYWLSY---ETSEDHSMSFNPSLFIGVYGSTAVLSMVILV 1005
++ +LL + + + D L + + A+L V+
Sbjct: 14 KLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLL---LALLGGVLRA 70
Query: 1006 VRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFV 1065
+++Y + +G K + +L P+SFFD SG ++SR + D + + +
Sbjct: 71 LQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVL 130
Query: 1066 GITVAMYITLLGIFIITCQYAWP----TIFLVIPLAWANYWYRGYYLSTSRELTRLDSIT 1121
+ + L+G ++ +W + ++ LA SR+L+R
Sbjct: 131 VLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARK----SRKLSRRVREA 186
Query: 1122 KAPVIHHFSESISGVMTIRAFGKQTT----FYQENVNRVNGNLRMDFHNNGSNEWLGFRL 1177
+ ES+SG+ I+AFG + F + N NLR L +
Sbjct: 187 LGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASR----LEALLAPLM 242
Query: 1178 ELLGSFTFCLATLFMILL-PSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSV 1236
LL S L L S + + + Y L L + + ++ +
Sbjct: 243 LLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAA 302
Query: 1237 ERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGE 1296
ER+ + + E P P G+++ ++ Y P VLK I+ SI GE
Sbjct: 303 ERLFELLDEEPEVEDP-----PDPLKDTIGSIEFENVSFSYPGKKP-VLKDISFSIEPGE 356
Query: 1297 KIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFE 1356
K+ +VG +GSGKSTLI++ RL +P+ G I+IDGIDI + L LR R GI+ Q+P+LF
Sbjct: 357 KVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS 416
Query: 1357 GTVRSNIDP-IGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCL 1415
GT+R NI +DEEI ++L+ + +A PD D++V + G N S GQRQ L +
Sbjct: 417 GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAI 476
Query: 1416 GRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVV 1475
R +L++ +L +DEAT+++D++T+A IQ +++ T + IAHR+ T+ + DR+IV+
Sbjct: 477 ARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVL 536
Query: 1476 DAG 1478
D G
Sbjct: 537 DNG 539
|
Length = 567 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 293 bits (752), Expect = 7e-81
Identities = 163/500 (32%), Positives = 269/500 (53%), Gaps = 19/500 (3%)
Query: 992 VYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRAS 1051
+Y TA + + R + H L ++ Q+L S+L APM+ +T +GRIL+R +
Sbjct: 930 IYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFT 989
Query: 1052 TDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFL-VIPLAWANYWYRGYYLST 1110
D ID LP + + + + +LG I P IF+ IP+A R Y+L T
Sbjct: 990 KDMAIIDDMLPLTLFDFIQLTLIVLGA-IFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRT 1048
Query: 1111 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSN 1170
S++L +L+S ++P+ H S+ G+ TIRAFG+Q+ F +N + F +
Sbjct: 1049 SQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTL 1108
Query: 1171 EWLGFRLELLGSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVE 1230
W R++++ F F T I ++ VG+ L+ +++ L WA+ S V+
Sbjct: 1109 RWFQMRIDIIFVFFFIAVTFIAIG--TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVD 1166
Query: 1231 NRMVSVERIKQFTEIPSEA--------AWKMEDRLPPPN------WPAHGNVDLIDLQVR 1276
M SV R+ +F ++P E +++ L N WP+ G +D+ L +
Sbjct: 1167 GLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAK 1226
Query: 1277 YRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLL 1336
Y VL+ ++ S+ GG+++G++GRTGSGKSTL+ RL+ + G I IDG+ + +
Sbjct: 1227 YTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSV 1285
Query: 1337 GLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDS 1396
L R FG+IPQ+ +F GT R N+DP Q+SDEEIWK E LK V+ PDKLD
Sbjct: 1286 TLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDF 1345
Query: 1397 LVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTI 1456
++ D G S G +QL+CL R +L +++L +DE +A +D T I++ +++ F+ CT+
Sbjct: 1346 VLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTV 1405
Query: 1457 ISIAHRIPTVMDCDRVIVVD 1476
I HR+ +++C + +V++
Sbjct: 1406 ILSEHRVEALLECQQFLVIE 1425
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 278 bits (712), Expect = 7e-76
Identities = 185/645 (28%), Positives = 311/645 (48%), Gaps = 45/645 (6%)
Query: 259 ASILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFESKWPKPHEKCKHPV 318
A+ LSK F+ W P+L KGY+ L++ +I + A+ +SE E +W + K
Sbjct: 9 ANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASAKKNP 68
Query: 319 R--TTLLRCF-WKEVAFTAFLAIVRLCVMYVGPVLIQRFV-DFTSGKSSSFYEGYYLVLI 374
+ L RCF W+ V + L V P+L+ R + + + YYL L
Sbjct: 69 KLLNALRRCFFWRFVFYGILLYFGEA-TKAVQPLLLGRIIASYDPFNAPEREIAYYLALG 127
Query: 375 LLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAV 434
L + V H F LGM +R L + +Y+K L+LS GQ+V+ ++
Sbjct: 128 LCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSN 187
Query: 435 DAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVIT-----TVVGIIGVMIFVVMGT 489
+ + + + H VW+ PLQ+ + + L++ L + ++ + + M
Sbjct: 188 NLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMP 247
Query: 490 KRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMY 549
R+ R + R+ T+E++ ++ +K WE+ K I + R+ E K Y
Sbjct: 248 YRDKRAG---KISE--RLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAY 302
Query: 550 SISGNIIVMWSTPVLISTLTFAT-ALLFGVPLDAGSVFTTTTIFKILQEPI-RNFPQSMI 607
+ + + L+ AL+ G+ L +FTT + +L+ + R FP ++
Sbjct: 303 LRYFYSSAFFFSGFFVVFLSVVPYALIKGIILR--RIFTTISYCIVLRMTVTRQFPGAIQ 360
Query: 608 SLSQAMISLARLDKYMLSRE--------------LVN----------ESVERVEGCDDNI 643
+ ++ ++ ++ ++ E +VN E E+++ +
Sbjct: 361 TWYDSLGAITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDEGIGELFEKIKQNNKAR 420
Query: 644 AVEVRDG--VFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKIS 701
D FS LKNI+ +++KG L A+ G+ GSGKSSLL I+GE+
Sbjct: 421 KQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSE 480
Query: 702 GKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQT 761
GK+K G ++ QTSWI GTI++NI+FGL + +Y V++ C LE+D+ + D+T
Sbjct: 481 GKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKT 540
Query: 762 EIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKT 821
+GE GI LSGGQ+ RI LARAVY+D D+YLLD F+ +D T +IF+ C+ + KT
Sbjct: 541 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKT 600
Query: 822 IILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALV 866
ILVT +++ L D IL++ EG+ G ++ L DF +L+
Sbjct: 601 RILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLL 645
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 225 bits (576), Expect = 8e-67
Identities = 103/213 (48%), Positives = 151/213 (70%)
Query: 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGR 1325
G + + DL VRY +N VLK + I G+K+G+ GRTGSGKS+L FFR+V+ G+
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 1326 IIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKD 1385
I+IDGIDIS L LH LRSR II Q+P+LF G++R N+DP + +D+ +W++LE QLK+
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 1386 VVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQR 1445
+V + P LD++V + G+N+SVGQRQL CL R ++ S +L MDEATAS+D T+ +Q+
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 1446 IIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
++ FA T+++IAHR+ T++D D V+V+ G
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 4e-64
Identities = 136/529 (25%), Positives = 227/529 (42%), Gaps = 79/529 (14%)
Query: 988 LFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFS---QILRSILHAPMSFFDTTPSG 1044
L IG+ A+ ++ ++R Y + H+G ++ + R +L P+S+F+ G
Sbjct: 196 LAIGL-LLAALFEALLRLLRTYLIAHLG---KRLDLELSGRFFRHLLRLPLSYFEKRSVG 251
Query: 1045 RILSRASTDQTNIDLFL-----------PFFVGITVAMYI---TLLGIFIITCQYAWPTI 1090
I+SR + I FL F + M++ L I + I
Sbjct: 252 EIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAA-------I 303
Query: 1091 FLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQ 1150
L + + R TR A E+I G+ T++A + F
Sbjct: 304 PLNVLITLIFQPLL-------RRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRS 356
Query: 1151 --ENVNRVNGNLRMDFHNNGSNE----------------WLGFRLELLGSFTFCLATLFM 1192
+N N+ W G L L G T L L
Sbjct: 357 QWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELT--LGQLVA 414
Query: 1193 ILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWK 1252
N+ W + + + V++ER+ + P E
Sbjct: 415 F----------NMLAGYFISPITRLSQLWTDFQ----QAK-VALERLGDILDTPPEQE-- 457
Query: 1253 MEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLI 1312
D+ G ++ ++ RY + P VL+ ++L I GEK+ +VGR+GSGKSTL+
Sbjct: 458 -GDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLL 516
Query: 1313 QVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNI---DPIGQY 1369
++ L +P GRI++DG+D++ + L LR + G + Q+P LF G++R NI +P
Sbjct: 517 KLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPE--A 574
Query: 1370 SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMD 1429
+DEEI ++ + + + P D+ V + G N S GQRQ L L R +L ++L +D
Sbjct: 575 TDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLD 634
Query: 1430 EATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
EAT+++D +T+A I + + + T+I IAHR+ T+ DR+IV+D G
Sbjct: 635 EATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 1e-59
Identities = 135/566 (23%), Positives = 248/566 (43%), Gaps = 35/566 (6%)
Query: 328 KEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFV-EVFST 386
K + L ++ + + P+LI R +D E L+L+L + V +
Sbjct: 14 KLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQS 73
Query: 387 HQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQ- 445
+ + QK+ +R L+ K LRL S G +++ + D + +S+++
Sbjct: 74 YLGSRLGQKIVADLR----RDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTV 129
Query: 446 LHAVWLMPLQISVALILLYNCLGASVITTVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDS 505
L V+ L + +L+LL++ + ++ + + + + + +++ + V +
Sbjct: 130 LVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGE 189
Query: 506 RMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMWSTPVLI 565
E L+ +RVIK ED KR E + + +M L+
Sbjct: 190 LNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLML----LL 245
Query: 566 STLTFATALLFGV------PLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARL 619
S+L L G L G++ L PI + + L +A + RL
Sbjct: 246 SSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERL 305
Query: 620 DKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIV 679
+ + V + + ++ +I E + FS+ + LK+I+ I+ G+ AIV
Sbjct: 306 FELLDEEPEVEDPPDPLKDTIGSI--EFENVSFSYPGKK--PVLKDISFSIEPGEKVAIV 361
Query: 680 GTVGSGKSSLLASILGEMHKISGKVKVCGT-------------TAYVAQTSWIQNGTIEE 726
G GSGKS+L+ +L SG++ + G V+Q + +GTI E
Sbjct: 362 GPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRE 421
Query: 727 NILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVY 785
NI G P + E +++ + + + G T +GERG+NLSGGQ+QR+ +ARA+
Sbjct: 422 NIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL 481
Query: 786 QDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGM 845
++ I +LD+ SA+D T + I ++ LKG+T +++ H++ + N D I+V+ G
Sbjct: 482 RNPPILILDEATSALDTETEALIQDA-LKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGR 540
Query: 846 IVQSGRYNALLNSGMDFGALVAAHET 871
IV+ G + LL G + L A
Sbjct: 541 IVERGTHEELLAKGGLYARLYQAQGG 566
|
Length = 567 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 201 bits (515), Expect = 1e-59
Identities = 72/211 (34%), Positives = 110/211 (52%), Gaps = 41/211 (19%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
++ ++ Y VLK ++L+I GEK+ +VG +GSGKSTL+++ RL +P+ G I+
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVV 1387
IDG+D+ L L LR +PQ+P LF GT+R NI
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 1388 AAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII 1447
S GQRQ + + R +L+ +L +DEAT+++D +T+A I +
Sbjct: 97 -----------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL 139
Query: 1448 REEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
R T+I IAHR+ T+ D DR+IV+D G
Sbjct: 140 RALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 2e-59
Identities = 100/220 (45%), Positives = 138/220 (62%), Gaps = 21/220 (9%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
V+V +G FSW +G L NIN+ I G LT IVG VG GKSSLL +ILGEM + GKV
Sbjct: 1 VQVTNGYFSWG--SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 705 -----------------KVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCC 747
+ + AY AQ W+ N T+EENI FG P N+ +Y V C
Sbjct: 59 HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACS 118
Query: 748 LEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSD 807
L+ D++++ +GDQTEIGERGINLSGGQ+QRI +ARA+YQ+ +I LDD FSA+D H
Sbjct: 119 LQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178
Query: 808 IFKECVRGALKG--KTIILVTHQVDFLHNVDLILVMREGM 845
+ +E + L+ +T++LVTH++ +L + D I+ M++G
Sbjct: 179 LMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 202 bits (515), Expect = 7e-59
Identities = 78/214 (36%), Positives = 128/214 (59%), Gaps = 2/214 (0%)
Query: 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGR 1325
G ++ ++ Y P VLK I SI GE + +VG TG+GK+TLI + R +P G+
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 1326 IIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYS-DEEIWKSLERCQLK 1384
I+IDGIDI + LRS G++ Q+ LF GT+ NI + DEE+ ++ +
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 1385 DVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 1444
D + P+ D+++ ++G N S G+RQLL + R ML+ ++L +DEAT+++D++T+ IQ
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 1445 RIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
+ + T I IAHR+ T+ + D+++V+D G
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 197 bits (501), Expect = 3e-56
Identities = 95/209 (45%), Positives = 134/209 (64%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNG 722
LKNINL+I+KG++ AI G+ GSGK+SLL ILGE+ GK+K G ++ +Q SWI G
Sbjct: 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPG 112
Query: 723 TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLAR 782
TI+ENI+FG+ + +Y VV+ C LE+D+ D T +GE GI LSGGQ+ RI LAR
Sbjct: 113 TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLAR 172
Query: 783 AVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMR 842
AVY+D D+YLLD F +D T +IF+ CV + KT ILVT +++ L D IL++
Sbjct: 173 AVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232
Query: 843 EGMIVQSGRYNALLNSGMDFGALVAAHET 871
EG G ++ L + DF + + ++T
Sbjct: 233 EGSSYFYGTFSELQSLRPDFSSKLMGYDT 261
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 2e-53
Identities = 75/200 (37%), Positives = 126/200 (63%), Gaps = 9/200 (4%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
VLK ++ +I G+K+ +VG +GSGKST++++ FR + S G I+IDG DI + L LR
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR 75
Query: 1344 RFGIIPQEPVLFEGTVRSNIDPIGQY-----SDEEIWKSLERCQLKDVVAAKPDKLDSLV 1398
G++PQ+ VLF T+ NI +Y +DEE+ ++ + Q+ D + PD D++V
Sbjct: 76 AIGVVPQDTVLFNDTIGYNI----RYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIV 131
Query: 1399 ADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIIS 1458
+ G S G++Q + + R +LK+ +L +DEAT+++D+ T+ EIQ +R+ T I
Sbjct: 132 GERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIV 191
Query: 1459 IAHRIPTVMDCDRVIVVDAG 1478
IAHR+ T+++ D++IV+ G
Sbjct: 192 IAHRLSTIVNADKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 3e-53
Identities = 70/216 (32%), Positives = 120/216 (55%), Gaps = 9/216 (4%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
V+ ++ RY + P VL+ I+L I GE + +VG +GSGKSTL+ + R + GRI+
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQY-----SDEEIWKSLERCQ 1382
IDG D+ L LR + G++ Q+ LF TV NI Y + EE+ ++
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENI----AYGRPGATREEVEEAARAAN 116
Query: 1383 LKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAE 1442
+ + P+ D+++ + G S GQRQ + + R +LK +L +DEAT+++D++++
Sbjct: 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERL 176
Query: 1443 IQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
+Q + T IAHR+ T+ + DR++V++ G
Sbjct: 177 VQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDG 212
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 3e-53
Identities = 135/572 (23%), Positives = 227/572 (39%), Gaps = 84/572 (14%)
Query: 949 WGVVAVLLLSVAWQGSLMAGDYWL---SYETSEDHSMSFNPSLFIGVYGSTAVLSMVILV 1005
W V++ LL + G + L + + + + + VL +
Sbjct: 1 WLVISALLAVL--SGIAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAW 58
Query: 1006 VRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFV 1065
+R K +L + +F P+G + A I+ P++
Sbjct: 59 LRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALE---GIEQLEPYYA 115
Query: 1066 GITVAMYITL---LGIFIITCQYAWPT--IFLV----IPLAWANYWYRGY--------YL 1108
M+++ L I I + W I L+ IPL G
Sbjct: 116 RYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLF---MILVGLAAKDASEKQF 172
Query: 1109 STSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGN--------L 1160
S L RL HF + + G+ T+RAFG +T +E + + + + L
Sbjct: 173 SA---LARLSG--------HFLDRLRGLETLRAFG-RTEATEERIRKDSEDFRKATMSVL 220
Query: 1161 RMDFHNNGSNEWL------------GFRLELLGSFTFCLATLFMILLPSSIIKPENVGLS 1208
R+ F ++ E+ GFRL G T +IL P ++G S
Sbjct: 221 RIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLG-S 279
Query: 1209 LSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNV 1268
+ + G + +++ E P +
Sbjct: 280 F-FHAAAAGE---------------AAADKLFTLLESPVATP--GSGEKAEVANEPPIEI 321
Query: 1269 DLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIII 1328
L +L RY + L + L+I G+ +VG +G+GKSTL+ + + P+ G I +
Sbjct: 322 SLENLSFRYP-DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRV 380
Query: 1329 DGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQY--SDEEIWKSLERCQLKDV 1386
+GID+ L R + + Q P LF GT+R NI + + SDEEI +L++ L +
Sbjct: 381 NGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENI-LLARPDASDEEIIAALDQAGLLEF 439
Query: 1387 VAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRI 1446
V KPD LD+++ + G S GQ Q L L R +L + LL +DE TA +D++T+ I +
Sbjct: 440 VP-KPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQA 498
Query: 1447 IREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
++E T++ I HR+ D DR++V+D G
Sbjct: 499 LQELAKQKTVLVITHRLEDAADADRIVVLDNG 530
|
Length = 559 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 9e-53
Identities = 141/558 (25%), Positives = 244/558 (43%), Gaps = 54/558 (9%)
Query: 948 WWGVV--AVLLLSVAWQGSLMAG------DYWLSYETSEDHSMSFNPSLFIGVYGSTAVL 999
G+V V ++ VA S +A D + + P + IG+ AVL
Sbjct: 13 KAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDR--SVLWWVPLVVIGL----AVL 66
Query: 1000 SMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDL 1059
+ V Y ++ V K + ++ +L P+SFFD P+G +LSR + D +
Sbjct: 67 RGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVAS 126
Query: 1060 FLPFFVGITVAMYITLLGIFIITCQYAWP---TIFLVIPL-AWANYWYRGYYLSTSRELT 1115
+ V +T++G+FI+ Y+W + +++P+ + S+E+
Sbjct: 127 AATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQ 186
Query: 1116 RLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGF 1175
+ V E++ G ++ FG Q Y+ R D +N N L
Sbjct: 187 N----SMGQVTTVAEETLQGYRVVKLFGGQA--YETR--------RFDAVSN-RNRRLAM 231
Query: 1176 RLELLGSF---------TFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMS 1226
++ GS + LA + I L + G ++ ++ L +
Sbjct: 232 KMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAM-IALIRPLKSL 290
Query: 1227 CFVENRM----VSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTP 1282
V M + E + + P E A G+V+ ++ RY
Sbjct: 291 TNVNAPMQRGLAAAESLFTLLDSPPEKD---TGTRAIER--ARGDVEFRNVTFRYPGRDR 345
Query: 1283 LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLR 1342
L I+L I GE + +VGR+GSGKSTL+ + R EP G+I++DG D++ L LR
Sbjct: 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLR 405
Query: 1343 SRFGIIPQEPVLFEGTVRSNI--DPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVAD 1400
+ ++ Q+ VLF T+ +NI Q EI ++L +D V P LD+ + +
Sbjct: 406 RQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGE 465
Query: 1401 SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIA 1460
+G S GQRQ L + R +LK + +L +DEAT+++D++++ +Q + T + IA
Sbjct: 466 NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIA 525
Query: 1461 HRIPTVMDCDRVIVVDAG 1478
HR+ T+ DR++V+D G
Sbjct: 526 HRLSTIEKADRIVVMDDG 543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 186 bits (473), Expect = 9e-53
Identities = 86/213 (40%), Positives = 133/213 (62%), Gaps = 1/213 (0%)
Query: 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGR 1325
G + + DL +Y VL+ I+ SI G+++G++GRTGSGKSTL+ F RL+ + G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 1326 IIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKD 1385
I IDG+ + + L R FG+IPQ+ +F GT R N+DP G++SDEEIWK E LK
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 1386 VVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQR 1445
V+ P +LD ++ D G S G +QL+CL R +L +++L +DE +A +D T I++
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 1446 IIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
+++ FA CT+I HRI +++C R +V++
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEEN 212
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 4e-51
Identities = 74/216 (34%), Positives = 121/216 (56%), Gaps = 5/216 (2%)
Query: 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGR 1325
G ++ ++ Y + L ++L+I GEK+ ++GR GSGKSTL+++ L +P+ G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 1326 IIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNI---DPIGQYSDEEIWKSLERCQ 1382
+++DG DI L DLR G +PQ+ LF GT+R NI P+ DE I ++ E
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLA--DDERILRAAELAG 118
Query: 1383 LKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAE 1442
+ D V P+ LD + + G S GQRQ + L R +L +L +DE T+++D ++
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 1443 IQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
++ +R+ T+I I HR + DR+IV+D+G
Sbjct: 179 LKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 3e-49
Identities = 75/216 (34%), Positives = 135/216 (62%), Gaps = 8/216 (3%)
Query: 1268 VDLIDLQVRY--RSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGR 1325
++ ++ RY R + P +LKG++L+I G+ + +VG +G GKST++ + R +P+ G
Sbjct: 1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 1326 IIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNI---DPIGQYSDEEIWKSLERCQ 1382
I++DG+DI L L LRS+ G++ QEPVLF+GT+ NI P +DEE+ ++ ++
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDA--TDEEVEEAAKKAN 117
Query: 1383 LKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAE 1442
+ D + + PD D+LV + G S GQ+Q + + R +L++ ++L +DEAT+++D++++
Sbjct: 118 IHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL 177
Query: 1443 IQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
+Q + T I IAHR+ T+ + D + V+ G
Sbjct: 178 VQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNG 213
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 3e-47
Identities = 74/217 (34%), Positives = 128/217 (58%), Gaps = 5/217 (2%)
Query: 1265 HGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGG 1324
G ++ ++ Y L ++L+I GEK+ ++GR GSGKSTL+++ L +P+ G
Sbjct: 461 QGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG 520
Query: 1325 RIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIG--QYSDEEIWKSLERCQ 1382
+++DG+DI + DLR G +PQ+P LF GT+R NI +G DEEI ++ E
Sbjct: 521 SVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIA-LGAPYADDEEILRAAELAG 579
Query: 1383 LKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAE 1442
+ + V PD LD + + G + S GQRQ + L R +L+ +L +DE T+++D++++
Sbjct: 580 VTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEER 639
Query: 1443 IQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
+ ++ A T++ + HR +++D DR+IV+D G
Sbjct: 640 FKDRLKRWLAGKTLVLVTHR-TSLLDLVDRIIVMDNG 675
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 9e-47
Identities = 131/550 (23%), Positives = 231/550 (42%), Gaps = 57/550 (10%)
Query: 346 VGPVLIQRFVD---FTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRC 402
P+ Q +D + +S+ L+L L + + T+ ++L +
Sbjct: 172 ATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLE--- 228
Query: 403 TLITSLYRKGLRLSCSARQAHGVGQIV---NYMAVDAQQLSDMMLQLHAVWLMPLQISVA 459
L +R LRL S + VG+I+ + + L+ +L L L L I +A
Sbjct: 229 -LSGRFFRHLLRLPLSYFEKRSVGEIISRVRELEQIREFLTGSILTLIIDLLFAL-IFLA 286
Query: 460 LILLYNC-LGASVITTVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMR 518
++ LY+ L V+ + + + + +R R + S + E + +
Sbjct: 287 VMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLV---ETIKGIE 343
Query: 519 VIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMWSTPVLISTLTFATALLFGV 578
+K A E F + ++ + +++ + L+ L+ L FG
Sbjct: 344 TVKALAAEPRFRSQW----DNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGA 399
Query: 579 PL--DA----GSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNES 632
L + G + + PI Q QA ++L RL ++++
Sbjct: 400 ILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLG------DILDTP 453
Query: 633 VERVEGCDDNIAVEVRDGVFSWDD------ENGEECLKNINLEIKKGDLTAIVGTVGSGK 686
E EG I + G +++ + L++++LEI G+ AIVG GSGK
Sbjct: 454 PE-QEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGK 512
Query: 687 SSLLASILGEMHKISGKVKVCGTT-------------AYVAQTSWIQNGTIEENILFGLP 733
S+LL +LG G++ + G YV Q ++ +G+I ENI G P
Sbjct: 513 STLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP 572
Query: 734 MNRAKYGEVVRVC---CLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDI 790
A E++ + +E + G T +GE G NLSGGQ+QR+ LARA+ I
Sbjct: 573 E--ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKI 630
Query: 791 YLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSG 850
LLD+ SA+D T I + + L+G+T+I++ H++ + + D I+V+ +G IV+ G
Sbjct: 631 LLLDEATSALDPET-EAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQG 689
Query: 851 RYNALLNSGM 860
+ LL G
Sbjct: 690 SHEELLAQGG 699
|
Length = 709 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 2e-45
Identities = 124/524 (23%), Positives = 232/524 (44%), Gaps = 66/524 (12%)
Query: 989 FIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILS 1048
+ G TA+L V+ ++ Y++ + +K A ++ L IL P+ FF +G I S
Sbjct: 196 LLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIAS 255
Query: 1049 RASTDQTNIDLFLPFFVGITVAMYITLLGIF---IITCQYAWPTIFLVIPLAWANYWYRG 1105
R + + FL G + + + ++ Y + I A N
Sbjct: 256 RVQLND-QVAEFL---SGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQ 311
Query: 1106 YYLSTSRELTRLDSITKAPVIHHFSESISGVM---TIRAFGKQTTFYQENVNRVNGNLRM 1162
+ R + +ISG+ T++A G ++ F+
Sbjct: 312 LVSRRRVDANRRLQQDAGKLT---GVAISGLQSIETLKASGLESDFF------------- 355
Query: 1163 DFHNNGSNEWLGFRLELLGSF-TFCLATLFMILLPSSIIKPENVG-LSLSYGLSLNGVL- 1219
+ W G++ +LL + + T + +LP+ + + L + + G L
Sbjct: 356 -------SRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLT 408
Query: 1220 ------FWAIYMSCFVE--NRMVS-----------VERIK---QFTEIPSEAAWKMEDRL 1257
F ++ MS F+E N +V + R+ + P +
Sbjct: 409 IGMLVAFQSL-MSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAG 467
Query: 1258 PPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFR 1317
P+ G V+L ++ Y P +++ +L++ G+++ +VG +GSGKST+ ++
Sbjct: 468 SEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAG 527
Query: 1318 LVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNI---DPIGQYSDEEI 1374
L +P G I+ DGI + L + ++ Q+ LFEGTVR N+ DP D ++
Sbjct: 528 LYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP--TIPDADL 585
Query: 1375 WKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATAS 1434
++ + + DV+ ++P D+ +A+ G N S GQRQ L + R ++++ +L +DEAT++
Sbjct: 586 VRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSA 645
Query: 1435 VDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
+D +T+ I +R CT I +AHR+ T+ DCD +IV++ G
Sbjct: 646 LDPETEKIIDDNLRRR--GCTCIIVAHRLSTIRDCDEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 3e-45
Identities = 107/465 (23%), Positives = 192/465 (41%), Gaps = 59/465 (12%)
Query: 1043 SGRILSRASTDQTNID-LFL----PFFVGITVAMYIT------------LLGIFIITCQY 1085
SG +L+R D +D L+L P V + + +T LLG+ ++
Sbjct: 114 SGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLL 173
Query: 1086 AWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQ 1145
PT+F L +A + F++ + G + FG +
Sbjct: 174 IIPTLFYR------------AGRKFGAHLA----QGRAALRSQFTDWVQGQAELLIFGAE 217
Query: 1146 TTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPENV 1205
+ L+ L L+ L+M
Sbjct: 218 DAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQ-------VGA 270
Query: 1206 GLSLSYGLSLNGVL--------FWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRL 1257
G +L+ + +L F + F V + ++ +I + K E
Sbjct: 271 G-ALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQV-IASARRLNDILDQ---KPEVTF 325
Query: 1258 PPPNWPAHG-NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFF 1316
P G ++L ++ Y LK L++ GEK+ ++GR+GSGKSTL+Q+
Sbjct: 326 PDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLA 385
Query: 1317 RLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNI---DPIGQYSDEE 1373
+P G I ++G++I+ L LR ++ Q LF GT+R N+ +P SDEE
Sbjct: 386 GAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANP--DASDEE 443
Query: 1374 IWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATA 1433
+W +L++ L+ ++ + PD L++ + + G S G+R+ L L R +L + L +DE T
Sbjct: 444 LWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTE 503
Query: 1434 SVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
+D T+ ++ ++ E T++ + HR+ + DR+IV+D G
Sbjct: 504 GLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNG 548
|
Length = 573 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 7e-45
Identities = 126/491 (25%), Positives = 231/491 (47%), Gaps = 21/491 (4%)
Query: 997 AVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTN 1056
A+ + +R Y H+ + +++ R +L P+ +F++ G ++R +
Sbjct: 189 AIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARVR-ELEQ 247
Query: 1057 IDLFLPFFVGITVAMYITLLGIFIITCQYAW--PTIFLVIPLAWANYWYRGYYLSTSREL 1114
I FL G + + + LL + + + PT+ V+ + Y ++
Sbjct: 248 IRNFL---TGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVG-PILR 303
Query: 1115 TRLDS--ITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEW 1172
R++ A ES++G+ TI+A + F ++ + F
Sbjct: 304 KRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNI 363
Query: 1173 LGFRLELLGSFTFCLATLF--MILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVE 1230
G +EL+ TF + F +++ ++ + V ++ G VL A F +
Sbjct: 364 AGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQ 423
Query: 1231 NRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITL 1290
+++ER+ P+E LP G + +++ RY ++P VL + L
Sbjct: 424 TG-IALERLGDILNSPTEPRSAGLAALPELR----GAITFENIRFRYAPDSPEVLSNLNL 478
Query: 1291 SIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQ 1350
I GE IG+VG +GSGKSTL ++ RL P G++++DG+D+++ LR + G++ Q
Sbjct: 479 DIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQ 538
Query: 1351 EPVLFEGTVRSNI---DPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSV 1407
E VLF ++R NI +P E + + + D ++ P ++ V + G N S
Sbjct: 539 ENVLFSRSIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSG 596
Query: 1408 GQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVM 1467
GQRQ + + R ++ + R+L DEAT+++D +++A I R +RE T+I IAHR+ TV
Sbjct: 597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVR 656
Query: 1468 DCDRVIVVDAG 1478
CDR+IV++ G
Sbjct: 657 ACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 6e-44
Identities = 77/206 (37%), Positives = 127/206 (61%), Gaps = 5/206 (2%)
Query: 1276 RYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISL 1335
RY+ + P++L I+L I GE +G+VGR+GSGKSTL ++ R P GR+++DG D++L
Sbjct: 9 RYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLAL 68
Query: 1336 LGLHDLRSRFGIIPQEPVLFEGTVRSNI---DPIGQYSDEEIWKSLERCQLKDVVAAKPD 1392
LR + G++ QE VLF ++R NI DP S E + ++ + D ++ P+
Sbjct: 69 ADPAWLRRQVGVVLQENVLFNRSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPE 126
Query: 1393 KLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA 1452
D++V + G S GQRQ + + R ++ + R+L DEAT+++D +++ I R + + A
Sbjct: 127 GYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA 186
Query: 1453 ACTIISIAHRIPTVMDCDRVIVVDAG 1478
T+I IAHR+ TV + DR+IV++ G
Sbjct: 187 GRTVIIIAHRLSTVKNADRIIVMEKG 212
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 8e-44
Identities = 132/536 (24%), Positives = 243/536 (45%), Gaps = 67/536 (12%)
Query: 979 DHSMSFNPSLFIGVYGSTAVLSMVILVV----RAYFVTHVGLKTAQIFFSQILRSILHAP 1034
DH S + S + Y + ++ ++L + R Y VT +G + + ++
Sbjct: 46 DHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLS 105
Query: 1035 MSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAM-------YITLLGIFIITCQYAW 1087
SFFD SG ++SR +TD T L +G +++M I L + IT
Sbjct: 106 PSFFDKNRSGEVVSRLTTDTT----LLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLT 161
Query: 1088 PTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQT- 1146
+ L +PL G + R+L+R A + E++ + T++AFG +
Sbjct: 162 SLVLLAVPLVLLPILLFGRRV---RKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDA 218
Query: 1147 ----------TFYQENVNRVN-------GNLRMDFHNNGSNEWLGFRLELLGSFTFCLAT 1189
Y+ R+ + + F W+G + G +
Sbjct: 219 ERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLG 278
Query: 1190 LFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEA 1249
F+ +++ V S+ +L+ V W ++ + ER+ + + +
Sbjct: 279 QFVFY---AVM----VAGSIG---TLSEV--WGE-----LQRAAGAAERLIELLQAEPDI 321
Query: 1250 AWKMEDRLPPPNWPAHGNVDLIDLQVRY--RSNTPLVLKGITLSIHGGEKIGVVGRTGSG 1307
+ P P G ++ + Y R + P L G+ L++ GE + +VG +G+G
Sbjct: 322 KAPAHPKTLPV--PLRGEIEFEQVNFAYPARPDQP-ALDGLNLTVRPGETVALVGPSGAG 378
Query: 1308 KSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIG 1367
KSTL Q+ R +P GRI++DG+D+ L +LR+R ++PQ+PVLF +V NI
Sbjct: 379 KSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENI---- 434
Query: 1368 QY-----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKH 1422
+Y +DEE+ + + ++A P+ D+ + + G S GQRQ + + R +LK
Sbjct: 435 RYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKD 494
Query: 1423 SRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
+ +L +DEAT+++D++++ +Q+ + T + IAHR+ TV+ DR++V+D G
Sbjct: 495 APILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQG 550
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 2e-42
Identities = 136/476 (28%), Positives = 229/476 (48%), Gaps = 62/476 (13%)
Query: 1031 LHAPMSFFDTTPSGRILSRASTDQTNI-DLFLPFFVGITVAMYITLLG-----IFIITCQ 1084
L P+S FDT P G+++SR + D I DL++ V TV L+G +F + +
Sbjct: 109 LRQPLSAFDTQPVGQLISRVTNDTEVIRDLYV--TVVATVLRSAALIGAMLVAMFSLDWR 166
Query: 1085 YAW------PTIFLVIPLAWANYWYRGYYLSTSREL-TRLDSITKAPVIHHFSESISGVM 1137
A P + +V+ + Y+ Y R + L I F+E I+G+
Sbjct: 167 MALVAIMIFPAVLVVMVI------YQRYSTPIVRRVRAYLADINDG-----FNEVINGMS 215
Query: 1138 TIRAFGKQTTFYQENVNRVN--------GNLRMDFHNNGSNEWLGFRLELLGSFTFCLAT 1189
I+ F +Q F E + + LR+D GF L L S L
Sbjct: 216 VIQQFRQQARF-GERMGEASRSHYMARMQTLRLD----------GFLLRPLLSLFSALIL 264
Query: 1190 LFMILL----PSSIIKPENVGL---SLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQF 1242
+++L S I+ VG+ +SY LN L ++ +V+ ER+ +
Sbjct: 265 CGLLMLFGFSASGTIE---VGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFEL 321
Query: 1243 TEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVG 1302
+ P + + +DR G +D+ ++ YR + VL+ I LS+ + +VG
Sbjct: 322 MDGPRQQ-YGNDDRPL-----QSGRIDIDNVSFAYRDDNL-VLQNINLSVPSRGFVALVG 374
Query: 1303 RTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSN 1362
TGSGKSTL + + G I +DG +S L LR ++ Q+PV+ T +N
Sbjct: 375 HTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLAN 434
Query: 1363 IDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKH 1422
+ S+E++W++LE QL ++ + PD L + + + G+N SVGQ+QLL L RV+++
Sbjct: 435 VTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQT 494
Query: 1423 SRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
++L +DEATA++DS T+ IQ+ + T++ IAHR+ T+++ D ++V+ G
Sbjct: 495 PQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRG 550
|
Length = 592 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 1e-41
Identities = 97/369 (26%), Positives = 169/369 (45%), Gaps = 45/369 (12%)
Query: 1128 HFSESISGVMTIRAFGKQTTFYQENVNRVNGN--------LRMDFHNNGSNEWLGFRLEL 1179
HF + + G+ T++ FG+ + R + LR+ F + LEL
Sbjct: 185 HFLDRLRGLPTLKLFGRAKA-QAAAIRRSSEEYRERTMRVLRIAFLS-------SAVLEL 236
Query: 1180 LGSFTFCLATLFMILLPSSIIKPENVGLSLSYG-LSLNGVLFWAIYM-SCFVENRMVSVE 1237
+ + L ++ +G L G L L LF + ++ R + +
Sbjct: 237 FATLSVALVAVY-------------IGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGAQ 283
Query: 1238 -RIKQFTEIPSEAAWKMEDRLPPPN-------WPAHGNVDLIDLQVRYRSNTPLVLKGIT 1289
+ +EA + + D P P +++ + V Y P L+ ++
Sbjct: 284 YHARADGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPSLEFSGVSVAYPGRRP-ALRPVS 342
Query: 1290 LSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIP 1349
++ GE++ +VG +G+GKSTL+ + V+P+ G I ++G+ ++ R + +P
Sbjct: 343 FTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVP 402
Query: 1350 QEPVLFEGTVRSNI---DPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWS 1406
Q P LF GT+ NI P SD EI ++LER L + VAA P LD+ + + G S
Sbjct: 403 QHPFLFAGTIAENIRLARPDA--SDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLS 460
Query: 1407 VGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTV 1466
GQ Q L L R L+ + LL +DE TA +D++T+AE+ +R T++ + HR+
Sbjct: 461 GGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALA 520
Query: 1467 MDCDRVIVV 1475
DR++V+
Sbjct: 521 ALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 3e-41
Identities = 124/477 (25%), Positives = 223/477 (46%), Gaps = 49/477 (10%)
Query: 1025 QILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQ 1084
+ RS+L + FFD +G + SR S+D + L V + + + LLG+
Sbjct: 239 DLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLW 298
Query: 1085 YAWP----TIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIR 1140
+ T+ + + A + Y S EL +++ KA + E++SG+ T+R
Sbjct: 299 LSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQ--EAVAKANQV--AEEALSGMRTVR 354
Query: 1141 AFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSII 1200
+F + + +R L N + + L + T + +L ++
Sbjct: 355 SFAAE----EGEASRFKEALEETLQLN--------KRKALAYAGYLWTTSVLGMLIQVLV 402
Query: 1201 KPENVGLSLSYGLSLNGVLFWAIYMSCFVEN--RMVSVERIKQFTEI-----PSEAAWKM 1253
L L+ +S ++ + +Y E + V ++ + SE ++
Sbjct: 403 LYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYV-----YSGMMQAVGASEKVFEY 457
Query: 1254 EDRLP--PPN-----WPAHGNVDLIDLQVRY--RSNTPLVLKGITLSIHGGEKIGVVGRT 1304
DR P P G ++ D+ Y R + P VLKG+T ++H GE + +VG +
Sbjct: 458 LDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVP-VLKGLTFTLHPGEVVALVGPS 516
Query: 1305 GSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNID 1364
GSGKST+ + L +P+GG++++DG+ + H L + ++ QEPVLF G+VR NI
Sbjct: 517 GSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIA 576
Query: 1365 -PIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHS 1423
+ DEEI + + D + P+ D+ V + G S GQ+Q + + R +++
Sbjct: 577 YGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKP 636
Query: 1424 RLLFMDEATASVDSQTDAEIQRIIRE--EFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
R+L +DEAT S DAE +++++E A+ T++ IAHR+ TV D+++V+ G
Sbjct: 637 RVLILDEAT----SALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 2e-40
Identities = 124/535 (23%), Positives = 221/535 (41%), Gaps = 58/535 (10%)
Query: 371 LVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVN 430
L+LI LV + + + + +R +L + K +L + G
Sbjct: 45 LLLIALVLRAFLAWLRERL---GYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAAT 101
Query: 431 YMA--VD------AQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGIIGVM 482
++ A+ L M L ++PL I +A+ ++ T I M
Sbjct: 102 LALEGIEQLEPYYARYLPQMFLSA----IVPLLILIAIFFFNWAAALILLITAPLIPLFM 157
Query: 483 IFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMR---VIK-FQAWEDHFNKRILS--- 535
I V + K + QF+ + + + L+ +R ++ F E +RI
Sbjct: 158 ILVGLAAKDASEKQFSAL------ARLSGHFLDRLRGLETLRAFGRTEAT-EERIRKDSE 210
Query: 536 -FRESEFGWLT-KFMYSISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFK 593
FR++ L F+ S S + + + LL L +
Sbjct: 211 DFRKATMSVLRIAFLSSAVLEFFAYLS--IALVAVYIGFRLLGEGDLTLFAGLF----VL 264
Query: 594 ILQ----EPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRD 649
IL +P+R+ + + + +L + S S E+ E + +E+
Sbjct: 265 ILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAE-VANEPPIEISL 323
Query: 650 GVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT 709
S+ +G+ L ++NL IK G LTA+VG G+GKS+LL +LG + G+++V G
Sbjct: 324 ENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGI 383
Query: 710 T-------------AYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMM 755
++V+Q ++ GTI ENIL P + + + L + +
Sbjct: 384 DLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKP 443
Query: 756 EYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRG 815
+ D T IGE G LSGGQ QR+ LARA+ + LLD+ + +DA T I + ++
Sbjct: 444 DGLD-TVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAET-EQIILQALQE 501
Query: 816 ALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHE 870
K KT++++TH+++ + D I+V+ G +V+ G + L + L+ E
Sbjct: 502 LAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQE 556
|
Length = 559 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 4e-40
Identities = 82/245 (33%), Positives = 139/245 (56%), Gaps = 5/245 (2%)
Query: 1238 RIKQFTEIPSEAAWKMEDR-LPPPNWP-AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGG 1295
+++ ++ + ++ D PP WP G V I++ Y P +L GI+ +I G
Sbjct: 232 DMEKMFDL-LDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLG 289
Query: 1296 EKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLF 1355
+ + +VG +G+GKST++++ FR + + G I IDG DI + LR GI+PQ+ VLF
Sbjct: 290 KTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLF 349
Query: 1356 EGTVRSNIDPIGQ-YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLC 1414
T+ NI + EE+ + E Q+ D + + P+ D+ V + G S G++Q +
Sbjct: 350 NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVA 409
Query: 1415 LGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIV 1474
+ R +LK+ +L +DEAT+++D+ T+ IQ +RE A T + IAHR+ T++D D +IV
Sbjct: 410 IARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIV 469
Query: 1475 VDAGL 1479
+D G
Sbjct: 470 LDNGR 474
|
Length = 497 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 1e-39
Identities = 65/213 (30%), Positives = 101/213 (47%), Gaps = 56/213 (26%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
+E ++ FS+ + LK+++L IK G+ AIVG GSGKS+LL +L SG++
Sbjct: 1 IEFKNVSFSYPG-RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 705 KVCGT-------------TAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKD 751
+ G AYV Q ++ +GTI ENIL
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENIL---------------------- 97
Query: 752 LEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKE 811
SGGQ+QRI +ARA+ +D I +LD+ SA+D T + E
Sbjct: 98 -------------------SGGQRQRIAIARALLRDPPILILDEATSALDPET-EALILE 137
Query: 812 CVRGALKGKTIILVTHQVDFLHNVDLILVMREG 844
+R KGKT+I++ H++ + + D I+V+ +G
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 3e-39
Identities = 72/230 (31%), Positives = 124/230 (53%), Gaps = 18/230 (7%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI-SGK 703
VE ++ F + + G L++I+L+I G+ A+VG GSGKS+L +++ + + SG+
Sbjct: 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTL-VNLIPRFYDVDSGR 58
Query: 704 VKVCGT-------------TAYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLE 749
+ + G V+Q ++ N T+ ENI +G P R + E R
Sbjct: 59 ILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAH 118
Query: 750 KDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIF 809
+ + + G T IGERG+ LSGGQ+QRI +ARA+ +D I +LD+ SA+D + +
Sbjct: 119 EFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES-ERLV 177
Query: 810 KECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSG 859
+ + +K +T ++ H++ + N D I+V+ +G IV+ G + LL G
Sbjct: 178 QAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 3e-39
Identities = 79/248 (31%), Positives = 129/248 (52%), Gaps = 28/248 (11%)
Query: 640 DDNIAVEVRD-GVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH 698
+D + +E D + S D G+ +N + G A+VG G+GK+SLL ++LG +
Sbjct: 345 NDPVTIEAEDLEILSPD---GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL- 400
Query: 699 KISGKVKVCGT-------TAYVAQTSWI-QN-----GTIEENILFGLP-MNRAKYGEVVR 744
G +K+ G ++ SW+ QN GT+ +N+L G P + + + +
Sbjct: 401 PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALE 460
Query: 745 VCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHT 804
+ + L ++ G T IG++ LS GQ QR+ LARA+ Q C + LLD+ +++DAH+
Sbjct: 461 NAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520
Query: 805 GSDIFKECVRGALK----GKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGM 860
++ V AL +T ++VTHQ++ L D I VM++G IVQ G Y L +G
Sbjct: 521 -----EQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGG 575
Query: 861 DFGALVAA 868
F L+A
Sbjct: 576 LFATLLAH 583
|
Length = 588 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 4e-39
Identities = 71/229 (31%), Positives = 116/229 (50%), Gaps = 23/229 (10%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
+E + FS+D + LK+IN IK G+ AIVG G+GK++L+ ++ G++
Sbjct: 3 IEFENVNFSYD--EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 705 KVCGTT-------------AYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKD 751
+ G V Q +++ +GTI ENI G P E V E
Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATD---EEVIEAAKEAG 117
Query: 752 L----EMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSD 807
+ G T +GE G NLS G++Q + +ARA+ +D I +LD+ S +D T
Sbjct: 118 AHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKL 177
Query: 808 IFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALL 856
I +E + +KG+T I++ H++ + N D ILV+ +G I++ G ++ LL
Sbjct: 178 I-QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELL 225
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 2e-38
Identities = 83/264 (31%), Positives = 143/264 (54%), Gaps = 20/264 (7%)
Query: 1225 MSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLP----PPNWPA----HGNVDLIDLQVR 1276
+ F+ ++ ++++F +++ED +P PP G V+ D+
Sbjct: 292 VVAFINQVFMAAPKLEEF--------FEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFS 343
Query: 1277 YRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLL 1336
Y N+ ++ ++ G+ + +VG TG+GKSTLI + R+ +P GRI+IDG DI +
Sbjct: 344 Y-DNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTV 402
Query: 1337 GLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQ--YSDEEIWKSLERCQLKDVVAAKPDKL 1394
LR ++ Q+ LF ++ NI +G+ +DEE+ + ER Q D + KPD
Sbjct: 403 TRASLRRNIAVVFQDAGLFNRSIEDNIR-VGRPDATDEEMRAAAERAQAHDFIERKPDGY 461
Query: 1395 DSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAAC 1454
D++V + G S G+RQ L + R +LK +L +DEAT+++D +T+A+++ + E
Sbjct: 462 DTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGR 521
Query: 1455 TIISIAHRIPTVMDCDRVIVVDAG 1478
T IAHR+ TV + DR++V D G
Sbjct: 522 TTFIIAHRLSTVRNADRILVFDNG 545
|
Length = 588 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 1e-37
Identities = 111/516 (21%), Positives = 216/516 (41%), Gaps = 64/516 (12%)
Query: 377 VAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDA 436
A++VE +H F ++ +R L+ K LS + + G ++N + D
Sbjct: 73 AARYVERLVSHDATF---RVLSALR----VRLFEKLEPLSPALLLRYRSGDLLNRLVADV 125
Query: 437 QQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGIIGVMIFVVMG-------- 488
L ++ L++ A ++ L + + + L I + + +++ +++
Sbjct: 126 DALDNLYLRVIAPAVVALVLIAVVTIG---LSFFSIPLALLLGLILLLLLLIIPTLFYRA 182
Query: 489 TKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHF----NKRILSF-----RES 539
++ ++ + R + + + + ED + S+ +++
Sbjct: 183 GRKFGA---HLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQA 239
Query: 540 EFGWLTKFMYSISGNIIVMWSTPVLISTLTFATALLFGV-----PLDAGSVFTTTTIFKI 594
F L+ +I L+ L A G P A ++ +
Sbjct: 240 RFTGLSDA----ILLLIAGL----LVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEA 291
Query: 595 LQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSW 654
EP+ P + L Q + S RL+ + + V E+ A+E+R+ F++
Sbjct: 292 F-EPLA--PGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTA--TTGQALELRNVSFTY 346
Query: 655 DDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------ 708
+ LKN NL + +G+ AI+G GSGKS+LL + G G + + G
Sbjct: 347 P-GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASL 405
Query: 709 -------TTAYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQ 760
T + + Q + +GT+ +N+ P + + ++ LEK LE G
Sbjct: 406 DEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLN 465
Query: 761 TEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGK 820
T +GE G LSGG+++R+ LARA+ D ++LLD+ +D T + + +GK
Sbjct: 466 TWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVL-ALLFEHAEGK 524
Query: 821 TIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALL 856
T+++VTH++ L +D I+V+ G I++ G + LL
Sbjct: 525 TLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELL 560
|
Length = 573 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 1e-37
Identities = 79/248 (31%), Positives = 130/248 (52%), Gaps = 19/248 (7%)
Query: 1237 ERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGE 1296
ER K E E E + P G +++ + RYR + PL+L ++L I GE
Sbjct: 426 ERAKPILEALPEVD---EAKTDPG--KLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGE 480
Query: 1297 KIGVVGRTGSGKSTLIQVFFRLV----EPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEP 1352
+ +VG +GSGKSTL RL+ P G + DG D++ L + +R + G++ Q
Sbjct: 481 FVAIVGPSGSGKSTL----LRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNG 536
Query: 1353 VLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQL 1412
L G++ NI + +E W++ L + + A P + +++++ G S GQRQ
Sbjct: 537 RLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQR 596
Query: 1413 LCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAA--CTIISIAHRIPTVMDCD 1470
L + R +++ R+L DEAT+++D++T Q I+ E T I IAHR+ T+ + D
Sbjct: 597 LLIARALVRKPRILLFDEATSALDNRT----QAIVSESLERLKVTRIVIAHRLSTIRNAD 652
Query: 1471 RVIVVDAG 1478
R+ V+DAG
Sbjct: 653 RIYVLDAG 660
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 2e-37
Identities = 73/229 (31%), Positives = 116/229 (50%), Gaps = 17/229 (7%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
+E + F++D LK+++ I G AIVG GSGKS++L + SG +
Sbjct: 1 IEFENVTFAYDPGR--PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 705 KVCG-------------TTAYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEK 750
+ G V Q + + N TI NI +G P + E + +
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 751 DLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFK 810
+ G T +GERG+ LSGG+KQR+ +ARA+ ++ I LLD+ SA+D HT +I
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ- 177
Query: 811 ECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSG 859
+R KG+T I++ H++ + N D I+V+++G IV+ G + LL G
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKG 226
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 1e-36
Identities = 61/208 (29%), Positives = 98/208 (47%), Gaps = 42/208 (20%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
++ RY P VL+ ++ SI GE + ++G +GSGKSTL ++ L+ P+ GR+ +DG
Sbjct: 5 NVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGA 64
Query: 1332 DISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKP 1391
DIS ++L G +PQ+ LF G++ NI
Sbjct: 65 DISQWDPNELGDHVGYLPQDDELFSGSIAENI---------------------------- 96
Query: 1392 DKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE-E 1450
S GQRQ L L R + + R+L +DE + +D + + + + I +
Sbjct: 97 -------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK 143
Query: 1451 FAACTIISIAHRIPTVMDCDRVIVVDAG 1478
A T I IAHR T+ DR++V++ G
Sbjct: 144 AAGATRIVIAHRPETLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 2e-36
Identities = 78/221 (35%), Positives = 113/221 (51%), Gaps = 16/221 (7%)
Query: 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGK 703
+E R+ FS+ ++ L N++L I+ G+ AI+G VGSGKS+LL + G SG
Sbjct: 2 RIEFRNVSFSYPNQEIPA-LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 704 VKVCGTTA-------------YVAQTSWIQNGTIEENILFGLPM-NRAKYGEVVRVCCLE 749
V + GT YV Q + GT+ +NI G P+ + + + +
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVT 120
Query: 750 KDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIF 809
+ G +IGERG LSGGQ+Q + LARA+ D I LLD+ SA+D +
Sbjct: 121 DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMD-MNSEERL 179
Query: 810 KECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSG 850
KE +R L KT+I++TH+ L VD I+VM G IV G
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 9e-36
Identities = 65/221 (29%), Positives = 127/221 (57%), Gaps = 6/221 (2%)
Query: 1263 PAH--GNVDLIDLQVRYRSNTP--LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL 1318
P H G V ++ Y P LVL+ ++ ++H GE +VG +GSGKST++ +
Sbjct: 5 PDHLKGIVKFQNVTFAYP-TRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF 63
Query: 1319 VEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNID-PIGQYSDEEIWKS 1377
+P GG++++DG IS L S+ ++ QEPVLF +++ NI + S E + ++
Sbjct: 64 YQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEA 123
Query: 1378 LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS 1437
++ ++ D+ V + G S GQ+Q + + R ++++ ++L +DEAT+++D+
Sbjct: 124 AQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDA 183
Query: 1438 QTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
+++ ++Q+ + + T++ IAHR+ TV D+++V+D G
Sbjct: 184 ESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGG 224
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 3e-35
Identities = 72/229 (31%), Positives = 119/229 (51%), Gaps = 3/229 (1%)
Query: 1235 SVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHG 1294
+ ERI + + A ++L DL Y P VL G++L +
Sbjct: 303 AAERIVEVLDAAGPVAEG-SAPAAGAVGLGKPTLELRDLSAGYPGAPP-VLDGVSLDLPP 360
Query: 1295 GEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVL 1354
GE++ ++G +GSGKSTL+ L++P G + +DG+ +S L ++R R + Q+ L
Sbjct: 361 GERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHL 420
Query: 1355 FEGTVRSNID-PIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLL 1413
F+ TVR N+ +DEE+W +LER L D + A PD LD+++ + G S G+RQ L
Sbjct: 421 FDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRL 480
Query: 1414 CLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHR 1462
L R +L + +L +DE T +D++T E+ + + T++ I H
Sbjct: 481 ALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 8e-35
Identities = 120/523 (22%), Positives = 230/523 (43%), Gaps = 75/523 (14%)
Query: 990 IGVYGSTAVLSMVILVVRAYFVTHVGLK-TAQIFFSQILRSILHAPMSFFDTTPSGRILS 1048
I Y +LS + + + + +G + + I S I + + PMSFF T +G I+S
Sbjct: 203 IIAYIIQQILSYI----QIFLLNVLGQRLSIDIILSYI-KHLFELPMSFFSTRRTGEIVS 257
Query: 1049 RASTDQTNID--------LFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWAN 1100
R + + ID LFL ++ + V +++ + + L IP+
Sbjct: 258 RFTDASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLL------SLLSIPVYAVI 311
Query: 1101 YW-YRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQ----ENVNR 1155
++ + + + + +++ + +I E ++G+ TI++ + Y E +
Sbjct: 312 IILFKRTFNKLNHDAMQANAVLNSSII----EDLNGIETIKSLTSEAERYSKIDSEFGDY 367
Query: 1156 VNGNLRMDFHNNGSNE--------------WLGFRLELLGSFTFCLATLFMILLPSSIIK 1201
+N + + + G W G L + G T F LL +
Sbjct: 368 LNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTP 427
Query: 1202 PENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKME-DRLPPP 1260
EN+ I + ++ V+ R+ + + SE K + L
Sbjct: 428 LENI-----------------INLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNL 470
Query: 1261 NWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE 1320
N G++ + D+ Y + +L I+L+I K +VG +GSGKSTL ++ +
Sbjct: 471 N----GDIVINDVSYSYGYGSN-ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ 525
Query: 1321 PSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIG---QYSDEEIWKS 1377
G I+++G + + H LR +PQEP +F G++ N+ +G S +EIW +
Sbjct: 526 ARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENL-LLGAKENVSQDEIWAA 584
Query: 1378 LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS 1437
E ++KD + P + +++ G + S GQ+Q + L R +L S++L +DE+T+++D+
Sbjct: 585 CEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDT 644
Query: 1438 QTDAEIQRIIRE--EFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
T+ ++I+ TII +AHR+ D++IV+D G
Sbjct: 645 ITE---KKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHG 684
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 1e-33
Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 24/222 (10%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+++ +L +Y + L G++ + GE G++G G+GK+TL+++ L++P+ G I+
Sbjct: 5 IEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNID-------PIGQYSDEEIWKSLE 1379
+ G D+ +R R G +PQEP L+ TVR N++ + ++E I + LE
Sbjct: 64 VLGYDVV-KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE 122
Query: 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
L+D K L S G +Q L + +L LL +DE T+ +D ++
Sbjct: 123 LFGLEDKANKKVRTL-----------SGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171
Query: 1440 DAEIQRIIREEFAA--CTIISIAHRIPTVMD-CDRVIVVDAG 1478
EI ++RE TI+ H + + CDRVI+++ G
Sbjct: 172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDG 213
|
Length = 293 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 2e-33
Identities = 80/298 (26%), Positives = 137/298 (45%), Gaps = 24/298 (8%)
Query: 564 LISTLTFA-TALLFGVPLDAGSVFTTTTIFKIL-----QEPIRNFPQSMISLSQAMISLA 617
L +TL+ A A+ G L AG + T +F +L P+R + + + +
Sbjct: 236 LFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGAQYHARADGVAAAE 295
Query: 618 RLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTA 677
L + + + + ++E + L+ ++ + G+ A
Sbjct: 296 ALFAVLDAAPRP-LAGKAPVTAAPAPSLEFSGVSVA--YPGRRPALRPVSFTVPPGERVA 352
Query: 678 IVGTVGSGKSSLLASILGEMHKISGKVKVCGTT-------------AYVAQTSWIQNGTI 724
+VG G+GKS+LL +LG + G + V G A+V Q ++ GTI
Sbjct: 353 LVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTI 412
Query: 725 EENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARA 783
ENI P + A+ E + L++ + + G T IGE G LSGGQ QR+ LARA
Sbjct: 413 AENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARA 472
Query: 784 VYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVM 841
+D + LLD+ + +DA T +++ E +R +G+T++LVTH++ D I+V+
Sbjct: 473 FLRDAPLLLLDEPTAHLDAETEAEV-LEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 3e-33
Identities = 88/272 (32%), Positives = 129/272 (47%), Gaps = 42/272 (15%)
Query: 606 MISLSQAMISLARLDKYMLSRELVNE------SVERVEGCDDNIAVEVRDGVFSWDDENG 659
+ QA +L LD+ M + R++G +E R+ F++
Sbjct: 425 LTRYQQAKTALQSLDELM-QLPVERPEGTRFLHRPRLQG-----EIEFRNVSFAYP-GQE 477
Query: 660 EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT---------- 709
L N++L I+ G+ AI+G +GSGKS+LL +LG G V + G
Sbjct: 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL 537
Query: 710 ---TAYVAQTSWIQNGTIEENILFGLP-------MNRAKYGEVVRVCCLEKD-LEMMEYG 758
YV Q + GT+ +NI G P + A+ V D L+M
Sbjct: 538 RRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQ--- 594
Query: 759 DQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK 818
IGERG +LSGGQ+Q + LARA+ +D I LLD+ SA+D + + FK+ ++ L
Sbjct: 595 ----IGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD-NRSEERFKDRLKRWLA 649
Query: 819 GKTIILVTHQVDFLHNVDLILVMREGMIVQSG 850
GKT++LVTH+ L VD I+VM G IV G
Sbjct: 650 GKTLVLVTHRTSLLDLVDRIIVMDNGRIVADG 681
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 127 bits (323), Expect = 3e-33
Identities = 65/220 (29%), Positives = 109/220 (49%), Gaps = 26/220 (11%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
+L Y L I+L+I GE + +VG GSGKSTL+++ L+ P+ G +++DG
Sbjct: 4 NLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGK 63
Query: 1332 DISLLGLHDLRSRFGIIPQEP--VLFEGTVRSNIDPIG----QYSDEEIWK----SLERC 1381
D++ L L +LR + G++ Q P F TV + G +EEI + +LE
Sbjct: 64 DLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEV-AFGLENLGLPEEEIEERVEEALELV 122
Query: 1382 QLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDA 1441
L+ + P L S GQ+Q + + V+ +L +DE TA +D
Sbjct: 123 GLEGLRDRSPFTL-----------SGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRR 171
Query: 1442 EIQRIIREEFAAC--TIISIAHRIPTVMD-CDRVIVVDAG 1478
E+ +++ + A TII + H + +++ DRVIV++ G
Sbjct: 172 ELLELLK-KLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 4e-33
Identities = 132/511 (25%), Positives = 224/511 (43%), Gaps = 50/511 (9%)
Query: 377 VAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMA--- 433
+ ++++F + Q+L + I + I L L S G+IV+
Sbjct: 211 ILSYIQIFLLNVL---GQRLSIDIILSYIKHL----FELPMSFFSTRRTGEIVSRFTDAS 263
Query: 434 --VDAQQLSDMMLQLHA-VWLMPLQISVALILLYNCLGASVITTVVGIIGVMIFVVMGTK 490
+DA L+ +L L +W++ + V L L+ + +++ + I V +++ K
Sbjct: 264 SIIDA--LASTILSLFLDMWIL---VIVGLFLVRQNMLLFLLSLLS--IPVYAVIIILFK 316
Query: 491 RN-NRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFG-WLTK-F 547
R N+ + M+ + E LN + IK E +I +SEFG +L K F
Sbjct: 317 RTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKI----DSEFGDYLNKSF 372
Query: 548 MYSIS----GNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFP 603
Y + I + + + L L+ L G + T + P+ N
Sbjct: 373 KYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENII 432
Query: 604 QSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECL 663
L A ++ RL++ L +R E + N + + D +S+ G L
Sbjct: 433 NLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYG--YGSNIL 490
Query: 664 KNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------------- 710
+I+L IK T IVG GSGKS+L ++G SG++ + G +
Sbjct: 491 SDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFI 550
Query: 711 AYVAQTSWIQNGTIEENILFGLPMN--RAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGI 768
Y+ Q +I +G+I EN+L G N + + + ++ D+E M G QTE+ E G
Sbjct: 551 NYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS 610
Query: 769 NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQ 828
++SGGQKQRI LARA+ D + +LD+ S +D T I + L+ KTII V H+
Sbjct: 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN--LQDKTIIFVAHR 668
Query: 829 VDFLHNVDLILVMREGMIVQSGRYNALLNSG 859
+ D I+V+ G I++ G ++ LL+
Sbjct: 669 LSVAKQSDKIIVLDHGKIIEQGSHDELLDRN 699
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 6e-33
Identities = 71/228 (31%), Positives = 118/228 (51%), Gaps = 19/228 (8%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
+E ++ F + LK ++L I G A+VG+ G GKS++++ + SG++
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 705 KVCGTT-------------AYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCL--- 748
+ G V+Q + +GTI ENI +G A EV
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGK--PDATDEEVEEAAKKANI 118
Query: 749 EKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDI 808
+ + G T +GERG LSGGQKQRI +ARA+ ++ I LLD+ SA+DA + +
Sbjct: 119 HDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLV 178
Query: 809 FKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALL 856
+E + A+KG+T I++ H++ + N DLI V++ G +V+ G ++ L+
Sbjct: 179 -QEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELM 225
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 126 bits (317), Expect = 3e-32
Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 15/224 (6%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------- 708
+G L NI+L IK G++ IVG GSGKS+L I +G+V V G
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPA 72
Query: 709 ----TTAYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEI 763
V Q + + N +I +NI P M+ + E ++ + + G T +
Sbjct: 73 WLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIV 132
Query: 764 GERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTII 823
GE+G LSGGQ+QRI +ARA+ + I + D+ SA+D + I + + G+T+I
Sbjct: 133 GEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN-MHDICAGRTVI 191
Query: 824 LVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVA 867
++ H++ + N D I+VM +G IV+ G ++ LL + L
Sbjct: 192 IIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQ 235
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 8e-32
Identities = 55/198 (27%), Positives = 102/198 (51%), Gaps = 12/198 (6%)
Query: 1288 ITLSIHGGEKIGVVGRTGSGKSTLIQV---FFRLVEPSGGRIIIDGIDISLLGLHDLRSR 1344
+ ++ G++I +VG +G+GK++L+ F P G + I+GI++ L R
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPESWRKH 424
Query: 1345 FGIIPQEPVLFEGTVRSNI---DPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADS 1401
+ Q P L GT+R N+ +P SDE++ ++LE + + + P LD+ + D
Sbjct: 425 LSWVGQNPQLPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482
Query: 1402 GDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAH 1461
SVGQ Q L L R +L+ +LL +DE TAS+D+ ++ + + + T + + H
Sbjct: 483 AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTH 542
Query: 1462 RIPTVMDCDRVIVVDAGL 1479
++ + D++ V+ G
Sbjct: 543 QLEDLAQWDQIWVMQDGQ 560
|
Length = 588 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 1e-31
Identities = 72/209 (34%), Positives = 108/209 (51%), Gaps = 15/209 (7%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------------ 710
L+N+N +K G + I G GSGKS+LL+ I G ++
Sbjct: 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSR 390
Query: 711 -AYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGI 768
A V+QT ++ + T+ NI G P + + V R+ + D+ + G TE+GERG+
Sbjct: 391 LAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGV 450
Query: 769 NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQ 828
LSGGQKQRI +ARA+ + +I +LDD SAVD T I +R +G+T+I+ H+
Sbjct: 451 MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHN-LRQWGEGRTVIISAHR 509
Query: 829 VDFLHNVDLILVMREGMIVQSGRYNALLN 857
+ L ILVM+ G I Q G ++ L
Sbjct: 510 LSALTEASEILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 3e-31
Identities = 60/211 (28%), Positives = 90/211 (42%), Gaps = 58/211 (27%)
Query: 1270 LIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIID 1329
+ +L RY T L ++L++ GE + +VG GSGKSTL++ L++P+ G I+ID
Sbjct: 2 IENLSFRYGGRT--ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILID 59
Query: 1330 GIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAA 1389
G DI+ L L +LR R G +P QL
Sbjct: 60 GKDIAKLPLEELRRRIGYVP--------------------------------QL------ 81
Query: 1390 KPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 1449
S GQRQ + L R +L + LL +DE T+ +D + + ++RE
Sbjct: 82 ----------------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE 125
Query: 1450 EFA-ACTIISIAHRIPTVMD-CDRVIVVDAG 1478
T+I + H DRVIV+ G
Sbjct: 126 LAEEGRTVIIVTHDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 5e-31
Identities = 67/185 (36%), Positives = 100/185 (54%), Gaps = 19/185 (10%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------- 710
G L++++ E+K G+ AIVG G+GKS+LL +ILG + SG ++V G
Sbjct: 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKR 69
Query: 711 -AYVAQTS---WIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKD--LEMMEYGDQTEIG 764
YV Q ++ + +L GL G R+ +K E +E +E+
Sbjct: 70 IGYVPQRRSIDRDFPISVRDVVLMGL---YGHKGLFRRLSKADKAKVDEALERVGLSELA 126
Query: 765 ERGI-NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRG-ALKGKTI 822
+R I LSGGQ+QR+ LARA+ QD D+ LLD+ F+ VD T DI+ E +R +G TI
Sbjct: 127 DRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIY-ELLRELRREGMTI 185
Query: 823 ILVTH 827
++VTH
Sbjct: 186 LVVTH 190
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 9e-31
Identities = 70/216 (32%), Positives = 106/216 (49%), Gaps = 23/216 (10%)
Query: 646 EVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVK 705
E+++ FS+ D L +I+L IKKG+ IVG GSGKS+LL + G + SG+V
Sbjct: 1 ELKNLSFSYPDGA-RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 706 VCGT-------------TAYVAQ--TSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEK 750
V G V Q T+EE + FGL N E + E+
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLE-NLGLPEEEIE----ER 114
Query: 751 DLEMMEYGDQTEIGERGI-NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIF 809
E +E + +R LSGGQKQR+ +A + D DI LLD+ + +D ++
Sbjct: 115 VEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELL 174
Query: 810 KECVRGALKGKTIILVTHQVDFLHNV-DLILVMREG 844
+ + +GKTII+VTH +D L + D ++V+ +G
Sbjct: 175 ELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 6e-30
Identities = 72/247 (29%), Positives = 125/247 (50%), Gaps = 10/247 (4%)
Query: 1235 SVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHG 1294
S RI + TE E + ++ L ++ Y VLKG++L I
Sbjct: 310 SARRINEITEQKPEVTFPTTSTAAAD----QVSLTLNNVSFTYPDQPQPVLKGLSLQIKA 365
Query: 1295 GEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVL 1354
GEK+ ++GRTG GKSTL+Q+ R +P G I+++G I+ LR ++ Q L
Sbjct: 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL 425
Query: 1355 FEGTVRSNI---DPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411
F T+R N+ P SDE + + L++ L+ ++ L++ + + G S G+++
Sbjct: 426 FSATLRDNLLLAAP--NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQR 482
Query: 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDR 1471
L + R +L + LL +DE T +D++T+ +I ++ E T++ I HR+ + DR
Sbjct: 483 RLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDR 542
Query: 1472 VIVVDAG 1478
+ V+D G
Sbjct: 543 ICVMDNG 549
|
Length = 574 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 7e-30
Identities = 68/229 (29%), Positives = 108/229 (47%), Gaps = 30/229 (13%)
Query: 1268 VDLIDLQVRYRSN---TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGG 1324
++L ++ + T L ++L I GE G++G +G+GKSTL+++ L P+ G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1325 RIIIDGIDISLL---GLHDLRSRFGIIPQEPVLFEG-TVRSNID-P--IGQYSDEEIWKS 1377
+ +DG D++ L L LR + G+I Q L TV N+ P + EI +
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 1378 ----LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATA 1433
LE L D P +L S GQ+Q + + R + + ++L DEAT+
Sbjct: 122 VAELLELVGLSDKADRYPAQL-----------SGGQKQRVAIARALANNPKILLCDEATS 170
Query: 1434 SVDSQTDAEI---QRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
++D +T I + I E TI+ I H + V CDRV V+D G
Sbjct: 171 ALDPETTQSILELLKDINRELGL-TIVLITHEMEVVKRICDRVAVLDQG 218
|
Length = 339 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 7e-30
Identities = 70/223 (31%), Positives = 117/223 (52%), Gaps = 40/223 (17%)
Query: 641 DNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI 700
+EV + S+ L++I+L ++KG++TA++G G+GKS+LL +ILG +
Sbjct: 1 MMPMIEVENLTVSY---GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS 57
Query: 701 SGKVKVCGTT----------AYVAQTSWIQNG---TIEENILFGLPMNRAKYGEVVRVCC 747
SG++K+ G YV Q S + T+++ +L G + + + +
Sbjct: 58 SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK 117
Query: 748 LE-----KDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDA 802
+ + + M + D+ +IGE LSGGQKQR+ LARA+ Q+ D+ LLD+ F+ VD
Sbjct: 118 EKVDEALERVGMEDLRDR-QIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDV 172
Query: 803 HTGSDIF---KECVRGALKGKTIILVTHQVDFLHNVDLILVMR 842
+I+ KE + +GKT+++VTH DL LVM
Sbjct: 173 AGQKEIYDLLKELRQ---EGKTVLMVTH--------DLGLVMA 204
|
Length = 254 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 8e-30
Identities = 130/497 (26%), Positives = 200/497 (40%), Gaps = 75/497 (15%)
Query: 413 LRLSCSARQAHGVGQIVN-YMAVDA--QQLSDMMLQ--------LHAVWLMPLQISVALI 461
LRL S + + G + + M + + LS L L + LM S L
Sbjct: 220 LRLPVSFFRQYSTGDLASRAMGISQIRRILSGSTLTTLLSGIFALLNLGLM-FYYSWKLA 278
Query: 462 LLYNCLGASVITTVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIK 521
L+ A + V I V + + + R R + K + + + I
Sbjct: 279 LV-----AVALALV--AIAVTLVLGLLQVRKERRLLEL------SGKISGLTVQLINGIS 325
Query: 522 -----------FQAWEDHFNKRILSFRESEF--GWLTKFMYSISGNIIVMWSTPVLISTL 568
F W F+++ ++ LT F + PVL S
Sbjct: 326 KLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVF--------NAVL--PVLTSAA 375
Query: 569 TFATA--LLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSR 626
FA A LL G L GS T F + ++IS+ + R + +
Sbjct: 376 LFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEAL 435
Query: 627 ELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGK 686
V+E + + + A+EV F +G L +++L+I+ G+ AIVG GSGK
Sbjct: 436 PEVDE--AKTDPGKLSGAIEVDRVTF-RYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGK 492
Query: 687 SSLLASILGEMHKISGKV----------------KVCGTTAYVAQTSWIQNGTIEENILF 730
S+LL +LG SG V + G V Q + +G+I ENI
Sbjct: 493 STLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGV---VLQNGRLMSGSIFENIAG 549
Query: 731 GLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDI 790
G P+ + E R+ L +D+ M G T I E G LSGGQ+QR+ +ARA+ + I
Sbjct: 550 GAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRI 609
Query: 791 YLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSG 850
L D+ SA+D T + I E + LK T I++ H++ + N D I V+ G +VQ G
Sbjct: 610 LLFDEATSALDNRTQA-IVSESL-ERLKV-TRIVIAHRLSTIRNADRIYVLDAGRVVQQG 666
Query: 851 RYNALLNSGMDFGALVA 867
Y+ L+ F L
Sbjct: 667 TYDELMAREGLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-29
Identities = 105/381 (27%), Positives = 166/381 (43%), Gaps = 57/381 (14%)
Query: 520 IKFQAWEDHFNKR---IL------SFRESEFGWLTKFMYSISGNIIVMWSTPVLISTLTF 570
IK A E F R L SFR + G +I+G I LI LTF
Sbjct: 330 IKATATEPQFQNRWDRQLAAYVAASFRVTNLG-------NIAGQAIE------LIQKLTF 376
Query: 571 ATALLFGVPLDAGSVFTTTTI--FKILQ----EPIRNFPQSMISLSQAMISLARLDKYML 624
A L FG L G + + F +L +P+ Q Q I+L RL
Sbjct: 377 AILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLG---- 432
Query: 625 SRELVNESVERVEGCDDNIAVEVRDGVFSWD------DENGEECLKNINLEIKKGDLTAI 678
+++N E A+ G +++ + E L N+NL+IK G+ I
Sbjct: 433 --DILNSPTE--PRSAGLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGI 488
Query: 679 VGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ-------------NGTIE 725
VG GSGKS+L + G+V V G +A +W++ + +I
Sbjct: 489 VGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIR 548
Query: 726 ENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAV 784
+NI P ++ + + G TE+GE+G NLSGGQ+QRI +ARA+
Sbjct: 549 DNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARAL 608
Query: 785 YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREG 844
+ I + D+ SA+D + + I + +R +G+T+I++ H++ + D I+V+ +G
Sbjct: 609 VGNPRILIFDEATSALDYESEALIMRN-MREICRGRTVIIIAHRLSTVRACDRIIVLEKG 667
Query: 845 MIVQSGRYNALLNSGMDFGAL 865
I +SGR+ LL + L
Sbjct: 668 QIAESGRHEELLALQGLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 2e-29
Identities = 77/259 (29%), Positives = 140/259 (54%), Gaps = 18/259 (6%)
Query: 1236 VERIKQFTEIPSEAAWKMED----------RLPPPNWPA----HGNVDLIDLQVRYRSNT 1281
++++ F EA K+ED R P + P G V+ + + +N+
Sbjct: 289 LDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEF-ANS 347
Query: 1282 PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL 1341
+ ++ G+ + +VG TG+GK+TLI + R+ +P+ G+I+IDGIDI+ + L
Sbjct: 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESL 407
Query: 1342 RSRFGIIPQEPVLFEGTVRSNIDPIGQ--YSDEEIWKSLERCQLKDVVAAKPDKLDSLVA 1399
R + Q+ LF ++R NI +G+ +DEE++++ + D + + + D+LV
Sbjct: 408 RKSIATVFQDAGLFNRSIRENIR-LGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVG 466
Query: 1400 DSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISI 1459
+ G+ S G+RQ L + R +LK++ +L +DEAT+++D +T+A ++ I T I
Sbjct: 467 ERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFII 526
Query: 1460 AHRIPTVMDCDRVIVVDAG 1478
AHR+ TV + D V+ +D G
Sbjct: 527 AHRLSTVRNADLVLFLDQG 545
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-29
Identities = 67/218 (30%), Positives = 119/218 (54%), Gaps = 2/218 (0%)
Query: 1263 PAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS 1322
A G+++ ++ Y L+ I I G+ + +VGR+GSGKST+ + R +
Sbjct: 337 RAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID 396
Query: 1323 GGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNI--DPIGQYSDEEIWKSLER 1380
G I++DG D+ L LR++ ++ Q LF T+ +NI QYS E+I ++
Sbjct: 397 EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARM 456
Query: 1381 CQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTD 1440
D + + LD+++ ++G S GQRQ + + R +L+ S +L +DEAT+++D++++
Sbjct: 457 AYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516
Query: 1441 AEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
IQ + E T + IAHR+ T+ D ++VV+ G
Sbjct: 517 RAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 3e-29
Identities = 69/227 (30%), Positives = 111/227 (48%), Gaps = 27/227 (11%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE-----PS 1322
++L DL V Y LK I+L I GE ++G +G GKSTL+++ RL + P
Sbjct: 1 IELRDLNVYYGDKH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 1323 GGRIIIDGIDISLLGLHD--LRSRFGIIPQEPVLFEGTVRSNID---PIGQYS-----DE 1372
G +++DG DI L + LR R G++ Q+P F G++ N+ + DE
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE 118
Query: 1373 EIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEAT 1432
+ ++L + L D V D+L +L S GQ+Q LCL R + +L +DE T
Sbjct: 119 RVEEALRKAALWDEVK---DRLHAL------GLSGGQQQRLCLARALANEPEVLLLDEPT 169
Query: 1433 ASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDC-DRVIVVDAG 1478
+++D + A+I+ +I E TI+ + H + DR + G
Sbjct: 170 SALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNG 216
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 4e-29
Identities = 68/208 (32%), Positives = 102/208 (49%), Gaps = 30/208 (14%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-----------TA 711
L +++L ++ G+ A++G G GK++LL I G SG++ + G
Sbjct: 16 LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIG 75
Query: 712 YVAQT-SWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGIN- 769
V Q + + T+ ENI FGL + E+ + E++E + R +
Sbjct: 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRA-----RVRELLELVGLEGLLNRYPHE 130
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK------GKTII 823
LSGGQ+QR+ LARA+ ++ + LLD+ SA+DA +E +R LK G T I
Sbjct: 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKL-----REELREELKELQRELGITTI 185
Query: 824 LVTH-QVDFLHNVDLILVMREGMIVQSG 850
VTH Q + L D I VM EG IVQ G
Sbjct: 186 YVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 8e-29
Identities = 126/537 (23%), Positives = 228/537 (42%), Gaps = 92/537 (17%)
Query: 371 LVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVN 430
++ + ++ ST+ ++ S K+ IR + L L L S G +++
Sbjct: 60 VIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKL----LGLPVSFFDRQPTGTLLS 115
Query: 431 YMAVDAQQ----LSDMM-------LQLHAVWLMPLQISVALILLYNCLGASVITTVVGII 479
+ D++Q +D L + ++++ L S L L ++ ++ ++
Sbjct: 116 RITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTL--------IVVVMLPVL 167
Query: 480 GVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRES 539
+++ V +KR R + + E L RV+K + + +R
Sbjct: 168 SILMRRV--SKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRR------- 218
Query: 540 EFGWLTKFMYSISGNIIVMWS--TPV--LISTLTFATALLFGVPLDAGSVFTTTTIFKIL 595
F ++ ++ + S +P+ LI++L A +LF A + T F
Sbjct: 219 -FDAVSNRNRRLAMKMTSAGSISSPITQLIASLALA-VVLFIALFQAQAGSLTAGDFT-- 274
Query: 596 QEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESV-----------------ERVEG 638
F +MI+L + + SL ++ M ES+ ER G
Sbjct: 275 -----AFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARG 329
Query: 639 CDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH 698
VE R+ F + L +I+L I+ G+ A+VG GSGKS+L+ I
Sbjct: 330 -----DVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE 383
Query: 699 KISGKVKVCGT-------------TAYVAQTSWIQNGTIEENILFGLP--MNRAKYGEVV 743
SG++ + G A V+Q + N TI NI +G +RA+ +
Sbjct: 384 PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERAL 443
Query: 744 RVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAH 803
+ ++ + G T IGE G+ LSGGQ+QR+ +ARA+ +D I +LD+ SA+D
Sbjct: 444 AAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNE 503
Query: 804 TGSDIFKECVRGAL----KGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALL 856
+ + V+ AL +G+T +++ H++ + D I+VM +G IV+ G +N LL
Sbjct: 504 S-----ERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL 555
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-28
Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 39/207 (18%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
++ Y VLK ++L + GEKI ++GR+GSGKSTL+Q+ ++P G I +DG+
Sbjct: 5 NVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGV 64
Query: 1332 DISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKP 1391
+S L L S ++ Q P LF+ T+R+N+
Sbjct: 65 PVSDLE-KALSSLISVLNQRPYLFDTTLRNNL---------------------------- 95
Query: 1392 DKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF 1451
G +S G+RQ L L R++L+ + ++ +DE T +D T+ ++ +I E
Sbjct: 96 ----------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL 145
Query: 1452 AACTIISIAHRIPTVMDCDRVIVVDAG 1478
T+I I H + + D+++ ++ G
Sbjct: 146 KDKTLIWITHHLTGIEHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 2e-28
Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 36/229 (15%)
Query: 1273 LQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGID 1332
L Y + LK ++LSI+ GE + ++G +G+GKSTL++ LVEP+ G ++IDG D
Sbjct: 6 LSKTYPNGKK-ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTD 64
Query: 1333 ISLLG---LHDLRSRFGIIPQEPVLFEG-TV-----------RSNIDPI-GQYSDEEIWK 1376
I+ L L LR + G+I Q+ L E +V RS + G + EE +
Sbjct: 65 INKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQR 124
Query: 1377 ---SLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATA 1433
+LER L D + D+L SG GQ+Q + + R +++ +L+ DE A
Sbjct: 125 ALAALERVGLLDKAYQRADQL------SG-----GQQQRVAIARALMQQPKLILADEPVA 173
Query: 1434 SVDSQTDAEIQRIIRE---EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
S+D + ++ +++ E I+S+ H++ + DR++ + G
Sbjct: 174 SLDPASSRQVMDLLKRINREEGITVIVSL-HQVDLAREYADRIVGLKDG 221
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 4e-28
Identities = 67/220 (30%), Positives = 114/220 (51%), Gaps = 25/220 (11%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
+L RY LK ++L I GE++ ++G GSGKSTL+++ L++P+ G +++DG+
Sbjct: 8 NLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGL 66
Query: 1332 DISL-LGLHDLRSRFGIIPQEPV--LFEGTVRSNID---PIGQYSDEEIWK----SLERC 1381
D S L +LR + G++ Q P LF TV + EEI + +LE
Sbjct: 67 DTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELV 126
Query: 1382 QLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDA 1441
L++++ P L SG GQ+Q + + V+ +L +DE TA +D +
Sbjct: 127 GLEELLDRPPFNL------SG-----GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175
Query: 1442 EIQRIIRE--EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
E+ ++++ E TII + H + V++ DRV+V+D G
Sbjct: 176 ELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDG 215
|
Length = 235 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 9e-28
Identities = 53/200 (26%), Positives = 91/200 (45%), Gaps = 45/200 (22%)
Query: 646 EVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVK 705
E+ + F + G L N++L +K G++ A+VG GSGKS+LL +I G + SG++
Sbjct: 1 EIENLSFRY---GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 706 VCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGE 765
+ G + + + I Y Q
Sbjct: 58 IDGKD-----IAKLPLEELRRRIG---------------------------YVPQ----- 80
Query: 766 RGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILV 825
LSGGQ+QR+ LARA+ + D+ LLD+ S +D + + + A +G+T+I+V
Sbjct: 81 ----LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIV 136
Query: 826 THQVDFLHNV-DLILVMREG 844
TH + D ++V+++G
Sbjct: 137 THDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-27
Identities = 58/208 (27%), Positives = 103/208 (49%), Gaps = 24/208 (11%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------T 709
L +++ I KG++T I+G GSGKS+LL + G + SG+V + G
Sbjct: 18 LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKK 77
Query: 710 TAYVAQTSWIQNG-TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIG---E 765
AYV Q+ G T+ E +L G R + + E + + E + + +
Sbjct: 78 LAYVPQSPSAPFGLTVYELVLLG----RYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD 133
Query: 766 RGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTII 823
R ++ LSGG++QR+ +ARA+ Q+ I LLD+ S +D ++ + KG T++
Sbjct: 134 RPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVV 193
Query: 824 LVTHQVDF-LHNVDLILVMREGMIVQSG 850
+V H ++ D ++++++G IV G
Sbjct: 194 MVLHDLNLAARYADHLILLKDGKIVAQG 221
|
Length = 258 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 2e-27
Identities = 83/257 (32%), Positives = 135/257 (52%), Gaps = 34/257 (13%)
Query: 632 SVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLA 691
+ RV+G AVE D FS+D N + +++++ E K G AIVG G+GKS+L+
Sbjct: 327 DLGRVKG-----AVEFDDVSFSYD--NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLIN 379
Query: 692 SILGEMHKI----SGKVKVCGT-------------TAYVAQTSWIQNGTIEENILFGLPM 734
+ ++ SG++ + GT A V Q + + N +IE+NI G P
Sbjct: 380 L----LQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP- 434
Query: 735 NRAKYGEVVRVCCLEKDLEMMEY---GDQTEIGERGINLSGGQKQRIQLARAVYQDCDIY 791
A E+ + + +E G T +GERG LSGG++QR+ +ARA+ +D I
Sbjct: 435 -DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPIL 493
Query: 792 LLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGR 851
+LD+ SA+D T + + K + +KG+T ++ H++ + N D ILV G +V+SG
Sbjct: 494 ILDEATSALDVETEAKV-KAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGS 552
Query: 852 YNALLNSGMDFGALVAA 868
++ L+ G F AL+ A
Sbjct: 553 FDELVARGGRFAALLRA 569
|
Length = 588 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 2e-27
Identities = 58/214 (27%), Positives = 97/214 (45%), Gaps = 46/214 (21%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+++ +L RY T L I+L++ GE G++G G+GK+TLI++ L++P G I
Sbjct: 1 IEVRNLSKRYGKKT--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDV 1386
+ G DI +++ R G +P+EP L+E TVR N+ S
Sbjct: 59 VLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLK----LSG--------------- 98
Query: 1387 VAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRI 1446
G +Q L L + +L LL +DE T+ +D ++ E +
Sbjct: 99 ---------------------GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL 137
Query: 1447 IREEFAA-CTIISIAHRIPTVMD-CDRVIVVDAG 1478
+RE TI+ +H + CDRV +++ G
Sbjct: 138 LRELKKEGKTILLSSHILEEAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 66/231 (28%), Positives = 111/231 (48%), Gaps = 30/231 (12%)
Query: 1268 VDLIDLQVRYRSNTPLV--LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGR 1325
+++ +L V + + V L ++ SI GE +G+VG +GSGKSTL + L++P+ G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 1326 IIIDGIDISLLGLHDL---RSRFGIIPQE------PVLFEGTVRSNI-DPI---GQYSDE 1372
II DG D+ L R ++ Q+ P + T+ I +P+ G+ S +
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM---TIGEQIAEPLRIHGKLSKK 118
Query: 1373 EIWKSLERCQLKDVVAAKPDKLDSLVAD-SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEA 1431
E + L V + L+ + SG GQRQ + + R + + +LL DE
Sbjct: 119 EA-RKEAVLLLLVGVGLPEEVLNRYPHELSG-----GQRQRVAIARALALNPKLLIADEP 172
Query: 1432 TASVDSQTDAEIQRI---IREEFAACTIISIAHRIPTV-MDCDRVIVVDAG 1478
T+++D A+I + ++EE T++ I H + V DRV V+ AG
Sbjct: 173 TSALDVSVQAQILDLLKKLQEEL-GLTLLFITHDLGVVAKIADRVAVMYAG 222
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 4e-27
Identities = 60/211 (28%), Positives = 104/211 (49%), Gaps = 34/211 (16%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI-SGKVKVCGTT----------- 710
LK++NLEI+ G+ AIVG GSGKS+LL ++LG + K SG+V + G
Sbjct: 21 LKDVNLEIEAGEFVAIVGPSGSGKSTLL-NLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79
Query: 711 ------AYVAQT-SWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEI 763
+V Q + + + T+ EN+ L + G ++ E + + +
Sbjct: 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGR------RKRAAEELL--EVLGL 131
Query: 764 GERGIN-----LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGA-L 817
+R + LSGGQ+QR+ +ARA+ + I L D+ +D+ T ++ +
Sbjct: 132 EDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE 191
Query: 818 KGKTIILVTHQVDFLHNVDLILVMREGMIVQ 848
+GKTII+VTH + D ++ +++G I +
Sbjct: 192 RGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 6e-27
Identities = 68/213 (31%), Positives = 109/213 (51%), Gaps = 19/213 (8%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------------ 710
L +NL ++ G+ A+VG G+GKS+L +L SG++ + G
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415
Query: 711 -AYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEY---GDQTEIGER 766
A V Q + ++ ENI +G P A EV E + G T +GER
Sbjct: 416 MALVPQDPVLFAASVMENIRYGRP--DATDEEVEAAARAAHAHEFISALPEGYDTYLGER 473
Query: 767 GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVT 826
G+ LSGGQ+QRI +ARA+ +D I LLD+ SA+DA + + ++ + +KG+T +++
Sbjct: 474 GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLV-QQALETLMKGRTTLIIA 532
Query: 827 HQVDFLHNVDLILVMREGMIVQSGRYNALLNSG 859
H++ + D I+VM +G IV G + L+ G
Sbjct: 533 HRLATVLKADRIVVMDQGRIVAQGTHAELIAKG 565
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-26
Identities = 92/463 (19%), Positives = 182/463 (39%), Gaps = 63/463 (13%)
Query: 406 TSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYN 465
+Y + R + + R+ G ++ + D L D+ ++ ++P +++ +
Sbjct: 90 VRVYERLARQALAGRRRLRRGDLLGRLGADVDALQDLYVR----VIVPAGVALVVGAAA- 144
Query: 466 CLGASVITTVVGII---GVMIFVVMGTKRNNRFQFNVMKNRDSRMKAT-NEMLNYMRVIK 521
+V++ +I G+++ + + R + + + E+ +
Sbjct: 145 VAAIAVLSVPAALILAAGLLLAGFVAPLVSLR----AARAAEQALARLRGELAAQLTDAL 200
Query: 522 FQAWEDHFNKRILSFR------ESEFGWLTKFMYSISGNIIVMWST--PVLISTLTFATA 573
A E + + + + E + + + +L + L A
Sbjct: 201 DGAAELVASGALPAALAQVEEADRELTRAERRAAAATA-----LGAALTLLAAGLAVLGA 255
Query: 574 LLFGVPLDAGSVFTTTTI--FKILQ----EPIRNFPQSMISLSQAMISLARLDKYMLSRE 627
L G P A T+ +L E P + L++ + R+ E
Sbjct: 256 LWAGGPAVADGRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIV------E 309
Query: 628 LVNESVERVEGCD--------DNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIV 679
+++ + EG +E+RD + L ++L++ G+ AI+
Sbjct: 310 VLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPG--APPVLDGVSLDLPPGERVAIL 367
Query: 680 GTVGSGKSSLLASILGEMHKISGKVKVCG-------------TTAYVAQTSWIQNGTIEE 726
G GSGKS+LLA++ G + + G+V + G + AQ + + + T+ E
Sbjct: 368 GPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRE 427
Query: 727 NILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVY 785
N+ P + + L L + G T +GE G LSGG++QR+ LARA+
Sbjct: 428 NLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALL 487
Query: 786 QDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQ 828
D I LLD+ +DA T ++ E + AL G+T++L+TH
Sbjct: 488 ADAPILLLDEPTEHLDAETADELL-EDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-26
Identities = 71/226 (31%), Positives = 108/226 (47%), Gaps = 28/226 (12%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
++L L + T VLKG+ L + GE + ++G +GSGKSTL+++ L+ P G ++
Sbjct: 1 IELRGLTKSFGGRT--VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 1328 IDGIDISLLGLHDL---RSRFGIIPQEPVLFEG-TVRSNID-PI---GQYSDEEIWKS-- 1377
IDG DIS L +L R R G++ Q LF+ TV N+ P+ + S+EEI +
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVL 118
Query: 1378 --LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASV 1435
LE L+ P +L SG G ++ + L R + LL DE TA +
Sbjct: 119 EKLEAVGLRGAEDLYPAEL------SG-----GMKKRVALARALALDPELLLYDEPTAGL 167
Query: 1436 DSQTDAEIQRIIRE--EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
D I +IR + T I + H + T DR+ V+ G
Sbjct: 168 DPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDG 213
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 3e-26
Identities = 82/369 (22%), Positives = 158/369 (42%), Gaps = 18/369 (4%)
Query: 314 CKHPVRTTLLRCFWKEVAFTAFLAIV-RLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLV 372
+ + TL V + ++ +C + + PVL++ FV F ++++ G LV
Sbjct: 230 KRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTL-PVLLKYFVKFLDADNATWGRGLGLV 288
Query: 373 LILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCS--ARQAHGVGQIVN 430
L L + + ++ H+F + S + G+ R L ++ K +S A+ G+I+N
Sbjct: 289 LTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIIN 348
Query: 431 YMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGIIGVMIFVVMGTK 490
M+ D ++++ M +W P+ + ++++LL +G + V ++ + K
Sbjct: 349 MMSTDVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMK 408
Query: 491 RNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYS 550
+ + K D+R+KATNE + +R+ KF AWE F I R E +L +
Sbjct: 409 HQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLA 468
Query: 551 ISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLS 610
V +TP L+ + F L G L VF T + +L+ P P ++
Sbjct: 469 RVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVL 528
Query: 611 QAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEI 670
Q ++S+ R+ ++ CD+ V+D W ++ + +
Sbjct: 529 QFLVSIKRISTFL--------------ECDNATCSTVQDMEEYWREQREHSTACQLAAVL 574
Query: 671 KKGDLTAIV 679
+ D+TA V
Sbjct: 575 ENVDVTAFV 583
|
Length = 1560 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 5e-26
Identities = 64/209 (30%), Positives = 101/209 (48%), Gaps = 31/209 (14%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-----------TA 711
+ +I+L+IKKG+ ++G G GK++LL I G SG++ + G
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80
Query: 712 YVAQTSWIQNG------TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGE 765
V Q+ T+EEN+ FGL + + ++ + E +E +
Sbjct: 81 MV-----FQSYALFPHMTVEENVAFGLKVRKKLKKAEIK----ARVEEALELVGLEGFAD 131
Query: 766 RGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK--GKTI 822
R + LSGGQ+QR+ LARA+ + + LLD+ SA+DA + KE ++ + G T
Sbjct: 132 RKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKE-LKELQRELGITF 190
Query: 823 ILVTH-QVDFLHNVDLILVMREGMIVQSG 850
+ VTH Q + L D I VM +G I Q G
Sbjct: 191 VYVTHDQEEALAMSDRIAVMNDGRIEQVG 219
|
Length = 352 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 5e-26
Identities = 60/217 (27%), Positives = 99/217 (45%), Gaps = 46/217 (21%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
++L ++ RY VL ++L+I GE + ++G +GSGKSTL++ L EP G I+
Sbjct: 1 LELKNVSKRY--GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 1328 IDGIDISLLGLH--DLRSRFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLK 1384
IDG D++ L LR R G++ Q+ LF TV NI
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENI--------------------- 97
Query: 1385 DVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 1444
+ SG GQ+Q + L R + +L +DE T+++D T E++
Sbjct: 98 ------------ALGLSG-----GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140
Query: 1445 RIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAG 1478
+++ A T++ + H + DRV+V+ G
Sbjct: 141 ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 5e-26
Identities = 53/274 (19%), Positives = 107/274 (39%), Gaps = 14/274 (5%)
Query: 335 FLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYE-GYYLVLILLVAKFVEVFSTHQFNFNS 393
L I+ V P+L+ RF+D + L ++L+ ++ +
Sbjct: 6 LLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQGSFYLG 65
Query: 394 QKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMP 453
++LG IR L +L R+ L L S + VG++ + + D ++ D + ++
Sbjct: 66 ERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLFFQS 125
Query: 454 LQISVALILLYNCLG--ASVITTVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATN 511
L V ++ G +++ + + +++ V+ K+ + K
Sbjct: 126 LATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLA-KKLRKLNRKEQKAYAKAGSVAE 184
Query: 512 EMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMWSTPVLISTLTFA 571
E L+ +R +K E++ +R E +I+ + + LIS L++A
Sbjct: 185 ESLSGIRTVKAFGREEYELERYDKALEDAE--KAGIKKAITAGLSFGITQ--LISYLSYA 240
Query: 572 TALLFGVPL------DAGSVFTTTTIFKILQEPI 599
AL FG L G+VF ++ L P+
Sbjct: 241 LALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 105 bits (266), Expect = 6e-26
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 28/191 (14%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNG 722
L +++L I+ G++ I+G G+GKS+LL ++ G + SG++ + G +A S
Sbjct: 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKD--LASLS----- 67
Query: 723 TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGIN-LSGGQKQRIQLA 781
P A+ V + +E + +R N LSGG++QR+ LA
Sbjct: 68 ----------PKELARKIAYV--------PQALELLGLAHLADRPFNELSGGERQRVLLA 109
Query: 782 RAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR-GALKGKTIILVTHQVDF-LHNVDLIL 839
RA+ Q+ I LLD+ S +D ++ + R +GKT+++V H ++ D ++
Sbjct: 110 RALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVI 169
Query: 840 VMREGMIVQSG 850
++++G IV G
Sbjct: 170 LLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 1e-25
Identities = 132/571 (23%), Positives = 237/571 (41%), Gaps = 67/571 (11%)
Query: 335 FLAIVRLCVMYVGPVLIQRFVDFTSGKSS--SFYEGYYLVLILLVAKFVEVF-STHQFNF 391
FL + L M++ P R +D G + + + +L +A V FN+
Sbjct: 169 FLTLSSLGEMFI-PFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNY 227
Query: 392 NSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWL 451
++ + IR L SL R+ L + G++ + ++ D Q +S + V L
Sbjct: 228 TMARINLRIREDLFRSLLRQDLGFF----DENKTGELTSRLSSDTQTMSRSLSLNVNVLL 283
Query: 452 MPLQISVALILLYNCLGASVITTVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATN 511
L + L LL L S T+V +I + + + R+Q + +++ KA
Sbjct: 284 RNL--VMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQ 341
Query: 512 ---EMLNYMRVIKFQAWEDHFNKRILSFRESEF--GWLTKFMYSISGNIIVMWSTPVLIS 566
E L+ MR ++ A E+ R E Y +W+T VL
Sbjct: 342 VAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAY-----AGYLWTTSVL-G 395
Query: 567 TLTFATALLFGVPLDAGSVFTT--TTIFKILQEPIRNFPQSMIS----LSQAMISLARLD 620
L L +G L ++ F + QE + + + + QA+ + ++
Sbjct: 396 MLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVF 455
Query: 621 KYMLSRELVNESV----ERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLT 676
+Y+ + + + +EG +E +D FS+ + LK + + G++
Sbjct: 456 EYLDRKPNIPLTGTLAPLNLEG-----LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVV 510
Query: 677 AIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------TAYVAQTSWIQNGT 723
A+VG GSGKS++ A + G+V + G A V Q + +G+
Sbjct: 511 ALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGS 570
Query: 724 IEENILFGL---PMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQL 780
+ ENI +GL P + + + G TE+GE+G LSGGQKQRI +
Sbjct: 571 VRENIAYGLTDTPD--EEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAI 628
Query: 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRG-----ALKGKTIILVTHQVDFLHNV 835
ARA+ + + +LD+ SA+DA EC + + +T++L+ H++ +
Sbjct: 629 ARALVRKPRVLILDEATSALDA--------ECEQLLQESRSRASRTVLLIAHRLSTVERA 680
Query: 836 DLILVMREGMIVQSGRYNALLNSGMDFGALV 866
D ILV+++G +V+ G + L+ + LV
Sbjct: 681 DQILVLKKGSVVEMGTHKQLMEDQGCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 2e-25
Identities = 60/227 (26%), Positives = 106/227 (46%), Gaps = 38/227 (16%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
+L Y +L ++ SI GE G++G GSGKSTL++ L++P G +++DG
Sbjct: 7 NLSFGYGGKP--ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGK 64
Query: 1332 DISLLGLHDLRSRFGIIPQEPVLFEG-TVR--------SNIDPIGQYSDEEIWK---SLE 1379
DI+ L +L + +PQ P G TV ++ G+ S E+ +LE
Sbjct: 65 DIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALE 124
Query: 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
L + +A +P +D L SG G+RQ + + R + + + +L +DE T+ +D
Sbjct: 125 LLGL-EHLADRP--VDEL---SG-----GERQRVLIARALAQETPILLLDEPTSHLDIAH 173
Query: 1440 DAEIQRIIRE--EFAACTIISIAH------RIPTVMDCDRVIVVDAG 1478
E+ ++R+ T++ + H R D +I++ G
Sbjct: 174 QIEVLELLRDLNREKGLTVVMVLHDLNLAARY-----ADHLILLKDG 215
|
Length = 258 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 31/207 (14%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI-SGKVKVCGT----------TA 711
LK ++L I+KG+ AIVG GSGKS+LL +ILG + + SG+V+V GT A
Sbjct: 20 LKGVSLSIEKGEFVAIVGPSGSGKSTLL-NILGGLDRPTSGEVRVDGTDISKLSEKELAA 78
Query: 712 YVAQT--------SWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEI 763
+ + + + + T EN+ L + E E+ E++E +
Sbjct: 79 FRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKE-----RRERAEELLERVGLGDR 133
Query: 764 GERGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS---DIFKECVRGALKG 819
+ LSGGQ+QR+ +ARA+ D I L D+ +D+ TG ++ +E + G
Sbjct: 134 LNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNK--EAG 191
Query: 820 KTIILVTHQVDFLHNVDLILVMREGMI 846
TI++VTH + D I+ +R+G I
Sbjct: 192 TTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 64/210 (30%), Positives = 107/210 (50%), Gaps = 20/210 (9%)
Query: 657 ENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG---TT--- 710
N LKNI+ IK G+ IVG GSGKSSLL ++ + SG + + G +
Sbjct: 14 PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGL 73
Query: 711 -------AYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRV---CCLEKDLEMMEYGDQ 760
+ + Q + +GTI N+ P E+ + L++ +E + G
Sbjct: 74 HDLRSRISIIPQDPVLFSGTIRSNL---DPFGEYSDEELWQALERVGLKEFVESLPGGLD 130
Query: 761 TEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGK 820
T + E G NLS GQ+Q + LARA+ + I +LD+ ++VD T + I ++ +R A K
Sbjct: 131 TVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI-QKTIREAFKDC 189
Query: 821 TIILVTHQVDFLHNVDLILVMREGMIVQSG 850
T++ + H++D + + D ILV+ +G +V+
Sbjct: 190 TVLTIAHRLDTIIDSDRILVLDKGRVVEFD 219
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 3e-25
Identities = 132/555 (23%), Positives = 242/555 (43%), Gaps = 58/555 (10%)
Query: 348 PVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQ---KLGMLIRCTL 404
P+L R +D S KS L + L A F VF+T + ++ +L R TL
Sbjct: 39 PILFGRIIDAISSKSDV------LPTLALWAGF-GVFNTIAYVLVAREADRLAHGRRATL 91
Query: 405 ITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLY 464
+T + + + + S Q G ++ + + L + L+ L VAL LL
Sbjct: 92 LTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMR---QHLATFVALFLLI 148
Query: 465 NCLGA-----SVITTVVGIIGVMIF-VVMGTKRNNR-----FQFNVMKNRDSRMKATNEM 513
A S++ V+GI+ ++I +VM +N + NV K+ + + +
Sbjct: 149 PTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVV 208
Query: 514 LNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMWSTPVLISTLTFATA 573
+Y R+ + F +LS + W ++++ + M ST ++ L T
Sbjct: 209 HSYNRIEAETSALKQFTNNLLSAQYPVLDW-----WALASGLNRMASTISMMCILVIGTV 263
Query: 574 LLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESV 633
L+ L G V +L I Q ++Q + A+L+ + + V +
Sbjct: 264 LVIKGELSVGEVIAFIGFANLL---IGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQRE 320
Query: 634 ERVEGCD-DNI--AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLL 690
E + + N+ AVE R +++ N + + +++ E K G AIVG G+GK++L+
Sbjct: 321 EPADAPELPNVKGAVEFRH--ITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLI 378
Query: 691 ASILGEMHK-ISGKVKVCGTT-------------AYVAQTSWIQNGTIEENILFGLPMNR 736
++L ++ G++ + G A V Q + + N +I ENI G
Sbjct: 379 -NLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLG--REG 435
Query: 737 AKYGEVVRVCCLEKDLEMME---YGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLL 793
A EV + + G T +GERG LSGG++QR+ +ARA+ ++ I +L
Sbjct: 436 ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVL 495
Query: 794 DDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYN 853
D+ SA+D T + + K + K +T ++ H++ + N DL+L + +G +++ G +
Sbjct: 496 DEATSALDVETEARV-KNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554
Query: 854 ALLNSGMDFGALVAA 868
L+ F L+
Sbjct: 555 ELIQKDGRFYKLLRR 569
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-25
Identities = 72/245 (29%), Positives = 121/245 (49%), Gaps = 12/245 (4%)
Query: 1238 RIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEK 1297
R+ + AA +M LP P G + + L +LKGI+ ++ GE
Sbjct: 311 RLNELLAELPAAAERM--PLPAP----QGALSVERLTAAPPGQKKPILKGISFALQAGEA 364
Query: 1298 IGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEG 1357
+G++G +GSGKSTL ++ + P+ G + +DG D+ L G +PQ+ LF+G
Sbjct: 365 LGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG 424
Query: 1358 TVRSNIDPIGQYSDEEIWKSLERCQLKDV---VAAKPDKLDSLVADSGDNWSVGQRQLLC 1414
T+ NI G+ +D E K +E +L V + P D+ + + G S GQRQ +
Sbjct: 425 TIAENIARFGEEADPE--KVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIA 482
Query: 1415 LGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAA-CTIISIAHRIPTVMDCDRVI 1473
L R + L+ +DE +++DS+ +A + I A T++ IAHR + D+++
Sbjct: 483 LARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKIL 542
Query: 1474 VVDAG 1478
V+ G
Sbjct: 543 VLQDG 547
|
Length = 580 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 6e-25
Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 30/235 (12%)
Query: 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGK 703
+E + F + + LK+++LEI+KG+ ++G GSGKS+LL + G + SG+
Sbjct: 3 MIEAENLSFRY--PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60
Query: 704 VKVCGTTAYVAQTSW---------IQNG-------TIEENILFGLPMNRAKYGEVVRVCC 747
V V G ++ QN T+E+ + FGL E+
Sbjct: 61 VLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEER-- 118
Query: 748 LEKDLEMMEYGDQTEIGERGI-NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS 806
+ + LE++ E+ +R NLSGGQKQR+ +A + +I LLD+ + +D
Sbjct: 119 VAEALELVGLE---ELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175
Query: 807 DI---FKECVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLN 857
++ K+ GKTII+VTH ++ + D ++V+ +G I+ G + N
Sbjct: 176 ELLELLKKLKEE--GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 6e-25
Identities = 74/256 (28%), Positives = 109/256 (42%), Gaps = 45/256 (17%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------------ 710
+ ++NL I++G+ ++G GSGK++ L I + SG++ + G
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRK 76
Query: 711 -AYVAQTSWIQNG-----TIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQ- 760
YV Q Q G T+ ENI + ++ + + L+ EY D+
Sbjct: 77 IGYVIQ----QIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRY 132
Query: 761 -TEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS---DIFKECVRGA 816
E LSGGQ+QR+ +ARA+ D I L+D+ F A+D T + KE +
Sbjct: 133 PHE-------LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL 185
Query: 817 LKGKTIILVTHQVD-FLHNVDLILVMREGMIVQSGR-YNALLNSGMDF-GALVAAHE--- 870
GKTI+ VTH +D L D I VM G IVQ L N DF E
Sbjct: 186 --GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGESERGL 243
Query: 871 TSMELVEVGKTMPSGN 886
+ LV V + G
Sbjct: 244 RLLSLVSVADAVRRGE 259
|
Length = 309 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 9e-25
Identities = 69/210 (32%), Positives = 108/210 (51%), Gaps = 27/210 (12%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLL---GLHD 1340
LK ++LS+ GE G++GR+G+GKSTLI+ L P+ G +++DG D++LL L
Sbjct: 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRK 79
Query: 1341 LRSRFGIIPQEPVLFEG-TVRSNID-PIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLV 1398
R R G+I Q L TV N+ P+ EI K + + +L LV
Sbjct: 80 ARRRIGMIFQHFNLLSSRTVFENVALPL------EIAG-----VPKAEIEERVLELLELV 128
Query: 1399 --ADSGDNW----SVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE--- 1449
D D + S GQ+Q + + R + + ++L DEAT+++D +T I ++R+
Sbjct: 129 GLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINR 188
Query: 1450 EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
E TI+ I H + V CDRV V++ G
Sbjct: 189 EL-GLTIVLITHEMEVVKRICDRVAVMEKG 217
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 58/219 (26%), Positives = 111/219 (50%), Gaps = 21/219 (9%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
V+ ++ F++ L++++ + G++TA+VG GSGKS+++A + G+V
Sbjct: 12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV 71
Query: 705 KVCGT--TAY-----------VAQTSWIQNGTIEENILFGL---PMNRAKYGEVVRVCCL 748
+ G + Y V Q + ++++NI +GL K E +
Sbjct: 72 LLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVK--EAAQKAHA 129
Query: 749 EKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDI 808
+ + G TE+GE+G LSGGQKQR+ +ARA+ ++ + +LD+ SA+DA S+
Sbjct: 130 HSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE--SEQ 187
Query: 809 FKEC-VRGALKGKTIILVTHQVDFLHNVDLILVMREGMI 846
+ + + +T++++ H++ + D ILV+ G I
Sbjct: 188 QVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-24
Identities = 68/230 (29%), Positives = 119/230 (51%), Gaps = 17/230 (7%)
Query: 641 DNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI 700
D +++ + + F++ D+ + LK ++L+IK G+ A++G G GKS+LL +
Sbjct: 335 DQVSLTLNNVSFTYPDQP-QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ 393
Query: 701 SGKVKVCGT--TAY-----------VAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVC 746
G++ + G Y V+Q + + T+ +N+L P + EV++
Sbjct: 394 QGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQV 453
Query: 747 CLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS 806
LEK LE + G +GE G LSGG+++R+ +ARA+ D + LLD+ +DA T
Sbjct: 454 GLEKLLEDDK-GLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETER 512
Query: 807 DIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALL 856
I E + + KT++++TH++ L D I VM G I++ G + LL
Sbjct: 513 QIL-ELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELL 561
|
Length = 574 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-24
Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 27/207 (13%)
Query: 657 ENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------- 708
+ G E L +++L++ G++ A+ G G+GK++L + G + + SG + + G
Sbjct: 10 KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKER 69
Query: 709 --TTAYVAQTSWIQNG--TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIG 764
+ YV Q Q ++ E +L GL E + KDL++ ++
Sbjct: 70 RKSIGYVMQDVDYQLFTDSVREELLLGLK-ELDAGNEQAE--TVLKDLDLYALKER---- 122
Query: 765 ERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTG---SDIFKECVRGALKGKT 821
++LSGGQKQR+ +A A+ D+ + D+ S +D ++ +E A +GK
Sbjct: 123 -HPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL---AAQGKA 178
Query: 822 IILVTHQVDFLHNV-DLILVMREGMIV 847
+I++TH +FL V D +L++ G IV
Sbjct: 179 VIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 2e-24
Identities = 78/246 (31%), Positives = 126/246 (51%), Gaps = 32/246 (13%)
Query: 632 SVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLA 691
+ER +G +E R+ F++ + L+NIN +I G A+VG GSGKS++ A
Sbjct: 334 VIERAKGD-----IEFRNVTFTYPGKE-VPALRNINFKIPAGKTVALVGRSGSGKSTI-A 386
Query: 692 SILGEMHKI-SGKVKVCGTT-------------AYVAQTSWIQNGTIEENILF--GLPMN 735
++L + I G++ + G A V+Q + N TI NI + +
Sbjct: 387 NLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYS 446
Query: 736 RAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDD 795
R + E R+ + M+ G T IGE G+ LSGGQ+QRI +ARA+ +D I +LD+
Sbjct: 447 REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDE 506
Query: 796 VFSAVDAHTGSDIFKECVRGAL----KGKTIILVTHQVDFLHNVDLILVMREGMIVQSGR 851
SA+D T S+ ++ AL K +T +++ H++ + D ILV+ +G IV+ G
Sbjct: 507 ATSALD--TESER---AIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGT 561
Query: 852 YNALLN 857
+ LL
Sbjct: 562 HAELLA 567
|
Length = 582 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-24
Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 42/210 (20%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
+L V Y T VL ++LSI GE +G++G G+GKSTL++ L++PS G I++DG
Sbjct: 4 NLSVGYGGRT--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK 61
Query: 1332 DISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKP 1391
D++ L +L + +PQ +LE L +A +P
Sbjct: 62 DLASLSPKELARKIAYVPQ--------------------------ALELLGLAH-LADRP 94
Query: 1392 DKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF 1451
+ L SG G+RQ + L R + + +L +DE T+ +D E+ ++R
Sbjct: 95 --FNEL---SG-----GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA 144
Query: 1452 AA--CTIISIAHRI-PTVMDCDRVIVVDAG 1478
T++ + H + DRVI++ G
Sbjct: 145 RERGKTVVMVLHDLNLAARYADRVILLKDG 174
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-24
Identities = 64/248 (25%), Positives = 124/248 (50%), Gaps = 10/248 (4%)
Query: 1234 VSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIH 1293
+ +R+ + M LP P G++ + ++ + L+GI+ S+
Sbjct: 289 QAYKRLNELLANYPSRDPAM--PLPEPE----GHLSVENVTIVPPGGKKPTLRGISFSLQ 342
Query: 1294 GGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPV 1353
GE + ++G +GSGKSTL ++ + P+ G + +DG D+ G +PQ+
Sbjct: 343 AGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVE 402
Query: 1354 LFEGTVRSNIDPIGQYSD-EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQL 1412
LF GTV NI G+ +D E+I ++ + + +++ PD D+++ G S GQRQ
Sbjct: 403 LFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQR 462
Query: 1413 LCLGRVMLKHSRLLFMDEATASVDSQTDAEIQR-IIREEFAACTIISIAHRIPTVMDC-D 1470
+ L R + +L+ +DE +++D + + + I + T++ I HR P+++ C D
Sbjct: 463 IALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHR-PSLLGCVD 521
Query: 1471 RVIVVDAG 1478
+++V+ G
Sbjct: 522 KILVLQDG 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 102 bits (258), Expect = 2e-24
Identities = 72/224 (32%), Positives = 110/224 (49%), Gaps = 46/224 (20%)
Query: 645 VEVRDGVFSWDDENGE-ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGK 703
+EVR+ ++ G L++I+L +++G+ A+VG G GKS+LL I G SG+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 704 VKVCGT--------TAYVAQTS----WIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKD 751
V V G YV Q W+ T+ +N+ GL + E E+
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPWL---TVLDNVALGLELQGVPKAEA-----RERA 112
Query: 752 LEMME----------YGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVD 801
E++E Y Q LSGG +QR+ LARA+ D D+ LLD+ FSA+D
Sbjct: 113 EELLELVGLSGFENAYPHQ---------LSGGMRQRVALARALAVDPDVLLLDEPFSALD 163
Query: 802 AHTGSDIFKECVRGALK-GKTIILVTHQVD---FLHNVDLILVM 841
A T + +E + + GKT++LVTH +D FL D ++V+
Sbjct: 164 ALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFL--ADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-24
Identities = 61/224 (27%), Positives = 106/224 (47%), Gaps = 34/224 (15%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
DL V Y + VL+ ++ + GE + +VG G+GKSTL++ L++P+ G I + G
Sbjct: 4 DLTVSYGGHP--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK 61
Query: 1332 DISLLGLHDLRSRFGIIPQE-------PVLFEGTVRSNIDP----IGQYSDEEIWK---S 1377
+ R R G +PQ P+ V + + S + K +
Sbjct: 62 PLE-----KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEA 116
Query: 1378 LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS 1437
LER L + +A + + L SG GQ+Q + L R +++ LL +DE A VD
Sbjct: 117 LERVGLSE-LADRQ--IGEL---SG-----GQQQRVLLARALVQDPDLLLLDEPFAGVDP 165
Query: 1438 QTDAEIQRIIREEFAA-CTIISIAHRIPTVMD-CDRVIVVDAGL 1479
+T +I ++RE TI+ + H + V++ DRV++++ +
Sbjct: 166 KTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTV 209
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 65/216 (30%), Positives = 100/216 (46%), Gaps = 51/216 (23%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------- 709
G E L++INL ++KG+ AI+G G GKS+LL I G SG+V + G
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD 73
Query: 710 TAYVAQTS----WIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMM-------EYG 758
YV Q W+ T+ +N+ GL + E ++ LE++ +Y
Sbjct: 74 IGYVFQEDALLPWL---TVLDNVALGLELRGKSKAE--ARERAKELLELVGLAGFEDKYP 128
Query: 759 DQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS-------DIFKE 811
Q LSGG +QR+ +ARA+ + LLD+ F A+DA T +++E
Sbjct: 129 HQ---------LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179
Query: 812 CVRGALKGKTIILVTHQVD---FLHNVDLILVMREG 844
KT++LVTH VD +L D ++V+
Sbjct: 180 ------TRKTVLLVTHDVDEAVYL--ADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 61/218 (27%), Positives = 102/218 (46%), Gaps = 32/218 (14%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
+L V Y + VL+ I+LS+ GE ++G G+GKSTL++ L++PS G I I G
Sbjct: 9 NLTVSYGNRP--VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGK 66
Query: 1332 DISLLGLHDLRSRFGIIPQE-------PVLFEGTVRS-------NIDPIGQYSDEEIWKS 1377
+ R R G +PQ+ P+ + V + + E++ ++
Sbjct: 67 PVR---KRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEA 123
Query: 1378 LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS 1437
LER ++D+ + +L SG GQ+Q + L R + ++ LL +DE VD
Sbjct: 124 LERVGMEDLRDRQIGEL------SG-----GQKQRVLLARALAQNPDLLLLDEPFTGVDV 172
Query: 1438 QTDAEIQRIIREEFAA-CTIISIAHRIPTVMD-CDRVI 1473
EI +++E T++ + H + VM DRVI
Sbjct: 173 AGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVI 210
|
Length = 254 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 9e-24
Identities = 66/277 (23%), Positives = 117/277 (42%), Gaps = 38/277 (13%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------TT 710
L ++ E++ G++ ++G G+GK++LL + G + SG++ V G
Sbjct: 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI 80
Query: 711 AYVAQT-SWIQNGTIEENI-----LFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIG 764
YV Q S T+ EN+ L+GL A+ R+ L + + + ++
Sbjct: 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAE----ERIEELLELFGLEDKANK---- 132
Query: 765 ERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK--GKTI 822
+ LSGG KQR+ +A A+ D ++ +LD+ S +D + E +R K G TI
Sbjct: 133 -KVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES-RREIWELLRELAKEGGVTI 190
Query: 823 ILVTHQVDFL-HNVDLILVMREGMIVQSGRYNALLNS--GMDFGALVAAHETSMELVEVG 879
+L TH ++ D ++++ +G I+ G L G L EL+E
Sbjct: 191 LLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGL 250
Query: 880 KTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSD 916
K + +I L E + +S+E
Sbjct: 251 KL-----VKGEEELAEILEALLEEGVKIESIEVKEPS 282
|
Length = 293 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 9e-24
Identities = 61/207 (29%), Positives = 100/207 (48%), Gaps = 28/207 (13%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
L G++L++ GE ++G G+GKSTL+++ + P G I+IDG ++ D +
Sbjct: 23 ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALA 82
Query: 1344 RFGI--IPQEPVLFEG-TVRSNIDPIGQYSDEEI----WKSLE---RCQLKDVVAAKPDK 1393
GI + QE L +V NI +G+ K++ R L +
Sbjct: 83 A-GIATVHQELSLVPNLSVAENI-FLGREPTRRFGLIDRKAMRRRARELLARLGLDID-- 138
Query: 1394 LDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQR---IIREE 1450
D+LV D S+ QRQ++ + R + +R+L +DE TA++ T E +R +IR
Sbjct: 139 PDTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAAL---TVKETERLFDLIR-R 190
Query: 1451 FAA--CTIISIAHRIPTVMD-CDRVIV 1474
A II I+HR+ V + DR+ V
Sbjct: 191 LKAQGVAIIYISHRLDEVFEIADRITV 217
|
Length = 500 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 9e-24
Identities = 76/271 (28%), Positives = 134/271 (49%), Gaps = 62/271 (22%)
Query: 1266 GNVDLIDLQVRY--RSNTPLVLKGITLSIHGGEKIGVVGRTGSGKST---LIQVFFRL-- 1318
G ++++D+ RY R N P + K +T S + +VG TGSGKST L+ F+ L
Sbjct: 1164 GKIEIMDVNFRYISRPNVP-IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKN 1222
Query: 1319 -------------------------------------------------VEPSGGRIIID 1329
V + G+I++D
Sbjct: 1223 DHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLD 1282
Query: 1330 GIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQ--YSDEEIWKSLERCQLKDVV 1387
G+DI L DLR+ F I+ QEP+LF ++ NI G+ + E++ ++ + + + +
Sbjct: 1283 GVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIK-FGKEDATREDVKRACKFAAIDEFI 1341
Query: 1388 AAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII 1447
+ P+K D+ V G + S GQ+Q + + R +L+ ++L +DEAT+S+DS ++ I++ I
Sbjct: 1342 ESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401
Query: 1448 RE--EFAACTIISIAHRIPTVMDCDRVIVVD 1476
+ + A TII+IAHRI ++ D+++V +
Sbjct: 1402 VDIKDKADKTIITIAHRIASIKRSDKIVVFN 1432
|
Length = 1466 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 1e-23
Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 52/218 (23%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
+ + + FS+ E ++ LKN++LE+K+G+ A++G GSGKS+LL + G++ G++
Sbjct: 1 LSINNVSFSYP-EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 705 KVCGT------------TAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDL 752
+ G + + Q ++ + T+ N+
Sbjct: 60 TLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 753 EMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKEC 812
G SGG++QR+ LAR + QD I LLD+ +D T +
Sbjct: 96 --------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL-SL 140
Query: 813 VRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSG 850
+ LK KT+I +TH + + ++D IL + G I+ G
Sbjct: 141 IFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-23
Identities = 65/206 (31%), Positives = 100/206 (48%), Gaps = 30/206 (14%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------T 709
L+ I+ ++ G+ AI+G GSGKS+L I+G SG V++ G
Sbjct: 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393
Query: 710 TAYVAQTSWIQNGTIEENILFGLPMNRAKYGE------VVRVCCLEKDLEM---MEYGDQ 760
Y+ Q + GT+ ENI A++GE ++ L E+ + G
Sbjct: 394 IGYLPQDVELFPGTVAENI--------ARFGENADPEKIIEAAKLAGVHELILRLPDGYD 445
Query: 761 TEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGK 820
T IG G LSGGQ+QRI LARA+Y D + +LD+ S +D + +G
Sbjct: 446 TVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGI 505
Query: 821 TIILVTHQVDFLHNVDLILVMREGMI 846
T++++TH+ L VD ILV+++G I
Sbjct: 506 TVVVITHRPSLLGCVDKILVLQDGRI 531
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-23
Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 33/228 (14%)
Query: 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGK 703
+E+++ S+ E LK++NL+I+ G+ ++G G GKS+LL I G SG+
Sbjct: 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 704 VKVCGT-----------TAYVAQT-SWIQNGTIEENILFGLPMNRAKYGEVV-RVCCLEK 750
+ + G A V Q + + T+ ENI FGL + E+ RV + K
Sbjct: 60 ILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAK 119
Query: 751 DLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFK 810
L + ++ + + LSGGQ+QR+ LARA+ + ++LLD+ S +DA +
Sbjct: 120 LLGLEHLLNR-----KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKL-----R 169
Query: 811 ECVRGALK------GKTIILVTH-QVDFLHNVDLILVMREGMIVQSGR 851
+R +K G T I VTH QV+ + D I+VM +G I Q G
Sbjct: 170 VLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGT 217
|
Length = 338 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-23
Identities = 69/210 (32%), Positives = 107/210 (50%), Gaps = 16/210 (7%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------------ 710
LK I+ ++ G+ I+G GSGKS+L ++G SG V++ G
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRH 411
Query: 711 -AYVAQTSWIQNGTIEENIL-FGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGI 768
Y+ Q + +GTI ENI FG + K E R+ + + + + G T IGE G
Sbjct: 412 IGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGA 471
Query: 769 NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGA-LKGKTIILVTH 827
LSGGQ+QRI LARA+Y D + +LD+ S +D+ G + A +G T++++ H
Sbjct: 472 TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS-EGEAALAAAILAAKARGGTVVVIAH 530
Query: 828 QVDFLHNVDLILVMREGMIVQSGRYNALLN 857
+ L +VD ILV+++G I G +L
Sbjct: 531 RPSALASVDKILVLQDGRIAAFGPREEVLA 560
|
Length = 580 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 99.5 bits (249), Expect = 3e-23
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 27/218 (12%)
Query: 1272 DLQVRYRSNTP--LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIID 1329
+L Y LKG++LSI GE + +VG +GSGKSTL+ + L P+ G + +D
Sbjct: 5 NLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVD 64
Query: 1330 GIDISLLGLHDL----RSRFGIIPQEPVLFEG-TVRSNID------PIGQYSDEEIWKS- 1377
G DIS L +L R G + Q L T N++ + + E +
Sbjct: 65 GTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEEL 124
Query: 1378 LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS 1437
LER L D + P +L S GQ+Q + + R + +++ DE T ++DS
Sbjct: 125 LERVGLGDRLNHYPSEL-----------SGGQQQRVAIARALANDPKIILADEPTGNLDS 173
Query: 1438 QTDAEIQRIIRE--EFAACTIISIAHRIPTVMDCDRVI 1473
+T E+ ++RE + A TI+ + H DR+I
Sbjct: 174 ETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRII 211
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-23
Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 33/224 (14%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+++ + + VL+ I LS+ GE + ++G +G GKSTL+++ L +P+ G ++
Sbjct: 4 LEIEGVSKSFGGVE--VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNI----DPIGQYSDEEIWKS---LE 1379
+DG ++ G + QE L TV N+ + G+ E ++ LE
Sbjct: 62 LDGRPVT-----GPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLE 116
Query: 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
L P +L SG G RQ + + R + +LL +DE ++D+ T
Sbjct: 117 LVGLAGFEDKYPHQL------SG-----GMRQRVAIARALATRPKLLLLDEPFGALDALT 165
Query: 1440 DAEIQ----RIIREEFAACTIISIAHRIP-TVMDCDRVIVVDAG 1478
E+Q R+ E T++ + H + V DRV+V+
Sbjct: 166 REELQDELLRLWEET--RKTVLLVTHDVDEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-23
Identities = 69/255 (27%), Positives = 114/255 (44%), Gaps = 27/255 (10%)
Query: 1245 IPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRS---------NTPLVLKGITLSIHGG 1295
+P K+ A + + +L RY S + ++ + G
Sbjct: 258 VPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREG 317
Query: 1296 EKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG--LHDLRSRFGIIPQEPV 1353
E +G+VG +GSGKSTL ++ L+ PS G II DG D+ L G L LR R ++ Q+P
Sbjct: 318 ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPY 377
Query: 1354 LF---EGTVRSNI-DPIGQYSDEEIWKSLER-CQLKDVVAAKPDKLDSLVA-DSGDNWSV 1407
TV + +P+ + + R +L ++V P+ LD SG
Sbjct: 378 SSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSG----- 432
Query: 1408 GQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII---REEFAACTIISIAHRIP 1464
GQRQ + + R + +LL +DE +++D A++ ++ +EE T + I+H +
Sbjct: 433 GQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL-GLTYLFISHDLA 491
Query: 1465 TVMD-CDRVIVVDAG 1478
V DRV V+ G
Sbjct: 492 VVRYIADRVAVMYDG 506
|
Length = 539 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 4e-23
Identities = 60/246 (24%), Positives = 98/246 (39%), Gaps = 17/246 (6%)
Query: 984 FNPSLFIGVYGSTAVLSMVILVVRAYFVT--HVGLKTAQIFFSQILRSILHAPMSFFDTT 1041
SL AV + L+++ F +G + + F +LR IL PMSFFDT
Sbjct: 36 ERSSLISLAILLIAVGVLQGLLLQGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTN 95
Query: 1042 PSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAW-------PTIFLVI 1094
G + SR + D + I L +G+ T++G FI+ Y W + L+I
Sbjct: 96 SVGELTSRLTNDVSKIRDGLGDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLI 155
Query: 1095 PLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVN 1154
L+ R+L R + A ES+SG+ T++AFG++ +
Sbjct: 156 LLSA-------VLAKKLRKLNRKEQKAYAKAGSVAEESLSGIRTVKAFGREEYELERYDK 208
Query: 1155 RVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLA-TLFMILLPSSIIKPENVGLSLSYGL 1213
+ + + +L+ ++ LA L+ S + V LS GL
Sbjct: 209 ALEDAEKAGIKKAITAGLSFGITQLISYLSYALALWFGAYLVISGGLSVGTVFAFLSLGL 268
Query: 1214 SLNGVL 1219
L+G L
Sbjct: 269 QLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 98.3 bits (246), Expect = 5e-23
Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 19/202 (9%)
Query: 1281 TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD 1340
T LK I L + GE + +VG GSGKS+L+ +E G + + G
Sbjct: 17 TSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---------- 66
Query: 1341 LRSRFGIIPQEPVLFEGTVRSNIDPIG--QYSDEEIWKSLERCQLKDVVAAKPDKLDSLV 1398
+ QEP + GT+R NI + + +E K ++ C L+ + PD + +
Sbjct: 67 ---SIAYVSQEPWIQNGTIRENI--LFGKPFDEERYEKVIKACALEPDLEILPDGDLTEI 121
Query: 1399 ADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIREEFAAC-TI 1456
+ G N S GQ+Q + L R + + + +D+ ++VD+ I + I T
Sbjct: 122 GEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTR 181
Query: 1457 ISIAHRIPTVMDCDRVIVVDAG 1478
I + H++ + D+++V+D G
Sbjct: 182 ILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 6e-23
Identities = 72/228 (31%), Positives = 107/228 (46%), Gaps = 40/228 (17%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------- 708
G++ + N+NLEI KG+ ++G GSGK++ + I + SG++ + G
Sbjct: 12 GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPV 71
Query: 709 ----TTAYVAQTSWIQNG-----TIEENI-----LFGLPMNRAKYGEVVRVCCLEKDLEM 754
YV Q Q G T+EENI L P + K E R L L +
Sbjct: 72 ELRRKIGYVIQ----QIGLFPHMTVEENIALVPKLLKWP--KEKIRE--RADEL---LAL 120
Query: 755 MEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR 814
+ LSGGQ+QR+ +ARA+ D + L+D+ F A+D T + +E R
Sbjct: 121 VGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKR 180
Query: 815 GALK---GKTIILVTHQVD-FLHNVDLILVMREGMIVQSGRYNALLNS 858
L+ GKTI+ VTH +D D I +M+ G IVQ G + +L S
Sbjct: 181 --LQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 9e-23
Identities = 58/215 (26%), Positives = 92/215 (42%), Gaps = 57/215 (26%)
Query: 646 EVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVK 705
EV + F + L+N++ I+ G+ AI+G GSGKS+L ILG + SG+V+
Sbjct: 2 EVENVSFRYPGAE-PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 706 VCGTT-------------AYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDL 752
+ G Y+ Q + +G+I ENIL
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENIL----------------------- 97
Query: 753 EMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKEC 812
SGGQ+QR+ LARA+Y + I +LD+ S +D G +
Sbjct: 98 ------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLD-VEGERALNQA 138
Query: 813 VRGA-LKGKTIILVTHQVDFLHNVDLILVMREGMI 846
+ G T I++ H+ + L + D ILV+ +G +
Sbjct: 139 IAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-22
Identities = 89/337 (26%), Positives = 150/337 (44%), Gaps = 40/337 (11%)
Query: 562 PVLISTLTFATALLFGV------PLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMIS 615
P L+++L A L+ G L G + ++ EP+ N +L +
Sbjct: 383 PTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGD 442
Query: 616 LARLDKYMLSRELVNESVERVEGCDDNIA--------VEVRDGVFSWDDENGEECLKNIN 667
L RLD + R V+ +E E VE+R+ F + ++N +
Sbjct: 443 LNRLDDVL--RNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLE-PPLIENFS 499
Query: 668 LEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT-------------AYVA 714
L ++ G A+VG GSGKS++ + G SG++ G A V
Sbjct: 500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVD 559
Query: 715 QTSWIQNGTIEENI-LFGLPMNRAKYGEVVRVC---CLEKDLEMMEYGDQTEIGERGINL 770
Q ++ GT+ +N+ L+ + A ++VR C + + G E+ E G NL
Sbjct: 560 QDIFLFEGTVRDNLTLWDPTIPDA---DLVRACKDAAIHDVITSRPGGYDAELAEGGANL 616
Query: 771 SGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVD 830
SGGQ+QR+++ARA+ ++ I +LD+ SA+D T I R +G T I+V H++
Sbjct: 617 SGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS 673
Query: 831 FLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVA 867
+ + D I+V+ G +VQ G + L G + L+
Sbjct: 674 TIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 1e-22
Identities = 50/178 (28%), Positives = 94/178 (52%), Gaps = 24/178 (13%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
V+ ++L ++ GE +G++G G+GK+T + LV P G+I++D DI+ L +H R+
Sbjct: 19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH-KRA 77
Query: 1344 RFGI--IPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVAD 1400
R GI +PQE +F TV NI + + ++++ K+ + ++LD+L+ +
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERK-----------EELDALLEE 126
Query: 1401 ---------SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 1449
+ S G+R+ + + R + + + + +DE A VD +IQRII+
Sbjct: 127 FHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKH 184
|
Length = 243 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 1e-22
Identities = 61/190 (32%), Positives = 103/190 (54%), Gaps = 9/190 (4%)
Query: 1274 QVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDI 1333
+V Y S +LK I++ GG +VG +G+GKSTLI++ RL++P+ G I+IDG+DI
Sbjct: 8 EVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDI 67
Query: 1334 SLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDK 1393
+ + DLR + G++ Q+P LFEGTV+ NI+ E K+++ +V +
Sbjct: 68 KTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGE---KNVDVEYYLSIVGLNKEY 124
Query: 1394 LDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE--EF 1451
V N S G+ Q + + R + + +L +DE T+++D + I+ +I +
Sbjct: 125 ATRDV----KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNK 180
Query: 1452 AACTIISIAH 1461
T+I I H
Sbjct: 181 MNLTVIWITH 190
|
Length = 241 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 1e-22
Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 42/234 (17%)
Query: 1271 IDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDG 1330
+L Y + LK I L+I+ GE + ++G +G+GKSTL++ RLVEPS G I+++G
Sbjct: 5 ENLSKVYPNGK-QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEG 63
Query: 1331 IDISLLGLHDLRS---RFGIIPQ-----------EPVL-----FEGTVRSNIDPIGQYSD 1371
DI+ L LR R G+I Q E VL ++ T RS +G++S+
Sbjct: 64 TDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSL---LGRFSE 120
Query: 1372 EEIWK---SLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFM 1428
E+ + +LER L D + D+L SG GQ+Q + + R + + L+
Sbjct: 121 EDKERALSALERVGLADKAYQRADQL------SG-----GQQQRVAIARALAQQPDLILA 169
Query: 1429 DEATASVDSQTDAEIQRIIRE---EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
DE AS+D +T ++ ++ E II++ H++ DR++ + AG
Sbjct: 170 DEPIASLDPKTSKQVMDYLKRINKEDGITVIINL-HQVDLAKKYADRIVGLKAG 222
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 2e-22
Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 26/222 (11%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
++L L Y S L ++L++ GE + ++G +G GK+TL+++ L P G I+
Sbjct: 1 LELKGLSKTYGSVR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNID---PIGQYSDEEIWK----SLE 1379
IDG D++ + R G++ Q+ LF TV NI + EI LE
Sbjct: 59 IDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLE 116
Query: 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
L+ ++ P +L SG GQ+Q + L R + + LL +DE +++D++
Sbjct: 117 LVGLEGLLNRYPHEL------SG-----GQQQRVALARALAREPSLLLLDEPLSALDAKL 165
Query: 1440 DAEIQRIIREEFAA--CTIISIAHRIPTVMD-CDRVIVVDAG 1478
E++ ++E T I + H + DR+ V++ G
Sbjct: 166 REELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 2e-22
Identities = 63/222 (28%), Positives = 113/222 (50%), Gaps = 22/222 (9%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+ + ++ Y ++ LK ++ I+ GE + ++G GSGKST+ ++ L++P G I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDP--IGQYSDEEIWKSLE-----R 1380
IDGI IS L ++R + GII Q P D IG +++I LE
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNP-----------DNQFIGATVEDDIAFGLENKKVPP 116
Query: 1381 CQLKDVV--AAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQ 1438
++KD++ AK ++ + N S GQ+Q + + V+ + ++ DE+T+ +D +
Sbjct: 117 KKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176
Query: 1439 TDAEIQRIIRE--EFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
EI++I+ + + T+ISI H + + D+VIV G
Sbjct: 177 GKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEG 218
|
Length = 271 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 3e-22
Identities = 58/203 (28%), Positives = 103/203 (50%), Gaps = 18/203 (8%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL-- 1341
LK + L I GE + +VG +GSGKSTL+ + L +P+ G ++I+G D++ L +L
Sbjct: 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79
Query: 1342 --RSRFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERC--QLKDVVAAKPDKLDS 1396
R + G + Q L TV N++ + + +R +L +V+ + L
Sbjct: 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSA-GRRKRAAEELLEVLGLEDRLLKK 138
Query: 1397 LVAD-SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AA 1453
++ SG GQ+Q + + R ++ + +++ DE T ++DS+T E+ ++RE
Sbjct: 139 KPSELSG-----GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERG 193
Query: 1454 CTIISIAHRIPTVMD-CDRVIVV 1475
TII + H P + DRVI +
Sbjct: 194 KTIIMVTHD-PELAKYADRVIEL 215
|
Length = 226 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 3e-22
Identities = 60/229 (26%), Positives = 108/229 (47%), Gaps = 36/229 (15%)
Query: 1273 LQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGID 1332
L Y LK + L I+ GE + ++G +G+GKSTL++ LV+P+ G I+ +G+
Sbjct: 9 LSKTYPGGHQ-ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQ 67
Query: 1333 ISLL---GLHDLRSRFGIIPQEPVLFEG-TVRSNI------------DPIGQYSDEE--- 1373
I+ L L LR G+I Q+ L +V N+ G +S E+
Sbjct: 68 ITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQ 127
Query: 1374 IWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATA 1433
+LER + D + L SG GQ+Q + + R +++ +++ DE A
Sbjct: 128 ALDALERVGILDKAYQRASTL------SG-----GQQQRVAIARALVQQPKIILADEPVA 176
Query: 1434 SVDSQTDAEIQRIIR---EEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
S+D ++ ++ I++ +E I+++ H++ DR+I + AG
Sbjct: 177 SLDPESAKKVMDILKDINQEDGITVIVNL-HQVDLAKKYADRIIGLKAG 224
|
Length = 258 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 7e-22
Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 3/207 (1%)
Query: 1274 QVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDI 1333
Q Y L+ + ++ G+ +G+ G TGSGKSTL+ + R + S G I I +
Sbjct: 320 QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL 379
Query: 1334 SLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQ--YSDEEIWKSLERCQLKDVVAAKP 1391
+ L L RSR ++ Q P LF TV +NI +G+ + +EI + D + P
Sbjct: 380 TKLQLDSWRSRLAVVSQTPFLFSDTVANNI-ALGRPDATQQEIEHVARLASVHDDILRLP 438
Query: 1392 DKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF 1451
D+ V + G S GQ+Q + + R +L ++ +L +D+A ++VD +T+ +I +R+
Sbjct: 439 QGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG 498
Query: 1452 AACTIISIAHRIPTVMDCDRVIVVDAG 1478
T+I AHR+ + + ++V+ G
Sbjct: 499 EGRTVIISAHRLSALTEASEILVMQHG 525
|
Length = 569 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 7e-22
Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 49/226 (21%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------- 709
NG++ LK+++L I G+ A++G G+GKS+LL + G + SG V + GT
Sbjct: 12 NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGK 71
Query: 710 --------TAYVAQT-SWIQNGTIEENILFGLPMNRAKYGEVVRVC-------------- 746
+ Q + I+ ++ EN+L G R R
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSG----RLGRRSTWRSLFGLFPKEEKQRALA 127
Query: 747 CLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVD---AH 803
LE+ + +++ Q R LSGGQ+QR+ +ARA+ Q + L D+ +++D +
Sbjct: 128 ALER-VGLLDKAYQ-----RADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSR 181
Query: 804 TGSDIFKE-CVRGALKGKTIILVTHQVDF-LHNVDLILVMREGMIV 847
D+ K +G T+I+ HQVD D I+ +++G IV
Sbjct: 182 QVMDLLKRINRE---EGITVIVSLHQVDLAREYADRIVGLKDGRIV 224
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 8e-22
Identities = 72/240 (30%), Positives = 113/240 (47%), Gaps = 39/240 (16%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
+E+R S+ LK ++L++++G++ AI+G GSGKS+LL I+G + SG+V
Sbjct: 1 IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 705 KVCGTTAYVAQTSWI-----------QNG------TIEENILFGLPMNRAKYGEVVRVCC 747
+ G + + Q+G T+ EN+ F L + E +R
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 748 LEKDLEMMEYGDQTEIGERGI------NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVD 801
LEK LE +G RG LSGG K+R+ LARA+ D ++ L D+ + +D
Sbjct: 118 LEK-LEA--------VGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLD 168
Query: 802 AHTGSDIFKECVRG--ALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLNS 858
S + + +R G T I+VTH +D + D I V+ +G IV G L S
Sbjct: 169 PIA-SGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 8e-22
Identities = 57/218 (26%), Positives = 94/218 (43%), Gaps = 33/218 (15%)
Query: 1272 DLQVRYRSNTP--LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIID 1329
++ Y L+ I+LS+ GE + +VG +G GKSTL+++ L P+ G +++D
Sbjct: 5 NVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVD 64
Query: 1330 GIDISLLGLHDLRSRFGIIPQEPVLFE-GTVRSNI-------DPIGQYSDEEIWKSLERC 1381
G ++ G + Q+ L TV N+ + E + LE
Sbjct: 65 GEPVT-----GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELV 119
Query: 1382 QLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDA 1441
L A P +L SG G RQ + L R + +L +DE +++D+ T
Sbjct: 120 GLSGFENAYPHQL------SG-----GMRQRVALARALAVDPDVLLLDEPFSALDALTRE 168
Query: 1442 EIQ----RIIREEFAACTIISIAHRI-PTVMDCDRVIV 1474
++Q I RE T++ + H I V DRV+V
Sbjct: 169 QLQEELLDIWRETGK--TVLLVTHDIDEAVFLADRVVV 204
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 8e-22
Identities = 74/216 (34%), Positives = 116/216 (53%), Gaps = 20/216 (9%)
Query: 1277 YRSNTPL---VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDI 1333
Y TP L + + I GE +G++G TGSGKSTLIQ L++P+ G+IIIDG+DI
Sbjct: 12 YMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDI 71
Query: 1334 S--LLGLHDLRSRFGIIPQEP--VLFEGTVRSNID--PIG-QYSDEEIWKSLERCQLKDV 1386
+ + L D+R + G++ Q P LFE T+ +I PI S+EEI ++R ++
Sbjct: 72 TDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAM--NI 129
Query: 1387 VAAKPDKLDSLVAD-SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQR 1445
V + D S S GQ++ + + V+ ++L +DE TA +D + EI
Sbjct: 130 VGLDYEDY----KDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILN 185
Query: 1446 IIRE--EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
I+E + TII ++H + V DR+IV++ G
Sbjct: 186 KIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221
|
Length = 287 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 9e-22
Identities = 72/209 (34%), Positives = 112/209 (53%), Gaps = 32/209 (15%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTA----------- 711
L ++NLE+ G L A++G GSGKS+LL I G SG++++ G A
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 712 YVAQT-SWIQNGTIEENILFGLPMNRAKYGEV-VRVCCLEKDLEMMEYGDQTEIGERGIN 769
+V Q + ++ T+ +NI FGL + + ++ RV E+ LE+++ +G+R N
Sbjct: 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARV---EELLELVQL---EGLGDRYPN 129
Query: 770 -LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK------GKTI 822
LSGGQ+QR+ LARA+ + + LLD+ F A+DA + KE +R L+ T
Sbjct: 130 QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK----VRKE-LRSWLRKLHDEVHVTT 184
Query: 823 ILVTH-QVDFLHNVDLILVMREGMIVQSG 850
+ VTH Q + + D I+VM G I Q G
Sbjct: 185 VFVTHDQEEAMEVADRIVVMSNGKIEQIG 213
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 1e-21
Identities = 70/233 (30%), Positives = 104/233 (44%), Gaps = 47/233 (20%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------- 709
NG++ LKNINL I G+ AI+G G+GKS+LL I + SG + + GT
Sbjct: 13 NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGK 72
Query: 710 --------TAYVAQT-SWIQNGTIEENILFGLPMNRAKYGEVVRVC-------------- 746
+ Q + I+ T+ EN+L G R Y R
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHG----RLGYKPTWRSLLGRFSEEDKERALS 128
Query: 747 CLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS 806
LE+ + + + Q R LSGGQ+QR+ +ARA+ Q D+ L D+ +++D T
Sbjct: 129 ALER-VGLADKAYQ-----RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSK 182
Query: 807 ---DIFKECVRGALKGKTIILVTHQVDF-LHNVDLILVMREGMIVQSGRYNAL 855
D K + G T+I+ HQVD D I+ ++ G IV G + L
Sbjct: 183 QVMDYLKRINKE--DGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 1e-21
Identities = 66/224 (29%), Positives = 112/224 (50%), Gaps = 27/224 (12%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+++ +L + VLKGI+LS+ GE + ++G +GSGKSTL++ L EP G I
Sbjct: 3 IEIKNLSKSFGDKE--VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 1328 IDGIDISLLG-LHDLRSRFGIIPQEPVLFEG-TVRSNI--DPI---GQYSDEEIWKS--- 1377
+DG D+ + LR + G++ Q+ LF TV N+ P+ E K+
Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALEL 120
Query: 1378 LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS 1437
LE+ L D A P +L SG GQ+Q + + R + +++ DE T+++D
Sbjct: 121 LEKVGLADKADAYPAQL------SG-----GQQQRVAIARALAMDPKVMLFDEPTSALDP 169
Query: 1438 QTDAEIQRIIREEFAA--CTIISIAHRIPTVMDC-DRVIVVDAG 1478
+ E+ +++ + A T+I + H + + DRVI +D G
Sbjct: 170 ELVGEVLDVMK-DLAEEGMTMIIVTHEMGFAREVADRVIFMDQG 212
|
Length = 240 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 92.8 bits (232), Expect = 2e-21
Identities = 48/185 (25%), Positives = 93/185 (50%), Gaps = 28/185 (15%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNG 722
L +I+L ++KG++ ++G G+GK++L+ ILG + SG++KV G + +
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLG------KDIKKEPE 69
Query: 723 TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLAR 782
++ I + LP + Y +L + E + LSGG KQR+ LA+
Sbjct: 70 EVKRRIGY-LPEEPSLYE----------NLTVREN----------LKLSGGMKQRLALAQ 108
Query: 783 AVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNV-DLILVM 841
A+ D ++ +LD+ S +D + + ++ +GKTI+L +H ++ + D + ++
Sbjct: 109 ALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAIL 168
Query: 842 REGMI 846
G I
Sbjct: 169 NNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 2e-21
Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 28/190 (14%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
+L RY V+ G++LS+ GE +G++G G+GK+T + LV+P G+I++DG
Sbjct: 5 NLSKRYGKRK--VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQ 62
Query: 1332 DISLLGLHDLRSRFGII--PQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVA 1388
DI+ L +H R+R GI PQE +F TV NI + LE
Sbjct: 63 DITKLPMHK-RARLGIGYLPQEASIFRKLTVEENILAV-----------LE--IRGLSKK 108
Query: 1389 AKPDKLDSL--------VADS-GDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
+ +KL+ L + S + S G+R+ + + R + + + L +DE A VD
Sbjct: 109 EREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIA 168
Query: 1440 DAEIQRIIRE 1449
+IQ+II+
Sbjct: 169 VQDIQKIIKI 178
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 94.8 bits (237), Expect = 2e-21
Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 42/221 (19%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
L ++ S+ GE G++G G+GK+TL + + P+ G ++ DG DI+ L H+ +
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHE-IA 73
Query: 1344 RFGIIP--QEPVLFEG-TVRSNIDPIGQYSD------------------EEIWKSLERCQ 1382
R GI Q P LF TV N+ + + E + LER
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVM-VAAQARTGSGLLLARARREEREARERAEELLERVG 132
Query: 1383 LKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAE 1442
L D+ +L S GQ++ L + R + +LL +DE A + E
Sbjct: 133 LADLADRPAGEL-----------SYGQQRRLEIARALATDPKLLLLDEPAAGL---NPEE 178
Query: 1443 IQRIIR--EEFAA--CTIISIAHRIPTVMD-CDRVIVVDAG 1478
+ + E T++ + H + VM DRV V+D G
Sbjct: 179 TEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQG 219
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 2e-21
Identities = 71/212 (33%), Positives = 107/212 (50%), Gaps = 30/212 (14%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT--------- 709
E LKN++LE+++GD I+G GSGKS LL +I G + SGK+ + G
Sbjct: 11 KEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK 70
Query: 710 --TAYVAQT-SWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGER 766
+YV Q + + T+ +NI +GL + E+ R K LE+ E + R
Sbjct: 71 RDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIER-----KVLEIAEMLGIDHLLNR 125
Query: 767 G-INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK------G 819
LSGG++QR+ +ARA+ + I LLD+ FSA+D T KE +R LK G
Sbjct: 126 KPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRT-----KEKLREELKKIRKEFG 180
Query: 820 KTIILVTH-QVDFLHNVDLILVMREGMIVQSG 850
T++ VTH + D + +M G ++Q G
Sbjct: 181 VTVLHVTHDFEEAWALADKVAIMLNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 2e-21
Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 30/208 (14%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-----------TTA 711
L ++NL+I G+ ++G G GK++ L I G SG++ + G A
Sbjct: 16 LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIA 75
Query: 712 YVAQT-SWIQNGTIEENILFGLPMNRAKYGEVV-RVCCLEKDLEMMEYGDQTEIGERGIN 769
V Q + + T+ +NI FGL + + E+ RV + + L++ D+ +
Sbjct: 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDR-----KPKQ 130
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK------GKTII 823
LSGGQ+QR+ L RA+ ++ ++L+D+ S +DA + +R LK G T I
Sbjct: 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK-----LRVQMRAELKRLQQRLGTTTI 185
Query: 824 LVTH-QVDFLHNVDLILVMREGMIVQSG 850
VTH QV+ + D I VM +G I Q G
Sbjct: 186 YVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 3e-21
Identities = 59/189 (31%), Positives = 94/189 (49%), Gaps = 24/189 (12%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTS 717
+ L +++L I+ G++ A++G GSGKS+LL I G SG + + G
Sbjct: 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGED------- 63
Query: 718 WIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQR 777
+ + E LP R + G V + L L ++E + LSGGQ+QR
Sbjct: 64 -LTDLEDE------LPPLRRRIGMVFQDFALFPHLTVLE--------NIALGLSGGQQQR 108
Query: 778 IQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR-GALKGKTIILVTHQVDFLHNV- 835
+ LARA+ D D+ LLD+ SA+D T ++ A G T++LVTH +D +
Sbjct: 109 VALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLA 168
Query: 836 DLILVMREG 844
D ++V+R+G
Sbjct: 169 DRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 4e-21
Identities = 65/236 (27%), Positives = 115/236 (48%), Gaps = 23/236 (9%)
Query: 640 DDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK 699
+ ++ ++V + FS+ + LKN++ EI +G+ AI+G GSGKS++ + G +
Sbjct: 3 NKSVMIKVENVSFSYPNSE-NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP 61
Query: 700 ISGKVKVCGTTAYVAQTSWIQN---------------GTIEENILFGLPMNRAKYGEVVR 744
SG++K+ G T I+ T+E++I FGL + ++
Sbjct: 62 QSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD 121
Query: 745 VCC-LEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAH 803
+ L K + M +Y D+ NLSGGQKQR+ +A + + +I + D+ S +D
Sbjct: 122 IIDDLAKKVGMEDYLDKEP-----QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176
Query: 804 TGSDIFKECVRGALKG-KTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNS 858
+I K V KT+I +TH +D D ++V EG ++ G+ +LN+
Sbjct: 177 GKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232
|
Length = 271 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 4e-21
Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 35/227 (15%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+ + +L Y+ T + ++L+++ GE G++G G+GK+T +++ + P+ G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIW---KSLERCQL 1383
I+G I R G PQ LF+ TVR ++ + K L + ++
Sbjct: 61 INGYSI-RTDRKAARQSLGYCPQFDALFDELTVREHL---------RFYARLKGLPKSEI 110
Query: 1384 KDVVAAK------PDKLDSLVAD-SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVD 1436
K+ V DK + SG G ++ L L ++ +L +DE T+ +D
Sbjct: 111 KEEVELLLRVLGLTDKANKRARTLSG-----GMKRKLSLAIALIGGPSVLLLDEPTSGLD 165
Query: 1437 SQTDAEIQRIIREEFAACTIISIAHRIPTVMD-----CDRVIVVDAG 1478
+ I +I E +II H MD CDR+ ++ G
Sbjct: 166 PASRRAIWDLILEVRKGRSIILTTHS----MDEAEALCDRIAIMSDG 208
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 7e-21
Identities = 67/226 (29%), Positives = 117/226 (51%), Gaps = 30/226 (13%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+++ +L + VLKGI L++ GE + ++G +GSGKSTL++ L EP G II
Sbjct: 1 IEIKNLHKSFGDFH--VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 1328 IDGIDISLLG--LHDLRSRFGIIPQEPVLFEG-TVRSNID--PI---GQYSDEEIWKS-- 1377
IDG+ ++ +++LR + G++ Q+ LF TV NI PI G E ++
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALE 118
Query: 1378 -LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVD 1436
LE+ L D A P +L SG GQ+Q + + R + + +++ DE T+++D
Sbjct: 119 LLEKVGLADKADAYPAQL------SG-----GQQQRVAIARALAMNPKVMLFDEPTSALD 167
Query: 1437 SQTDAEIQRIIREEFAA---CTIISIAHRIPTVMD-CDRVIVVDAG 1478
+ E+ ++++ A T++ + H + + DRVI +D G
Sbjct: 168 PELVGEVLDVMKD--LAEEGMTMVVVTHEMGFAREVADRVIFMDDG 211
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 8e-21
Identities = 58/212 (27%), Positives = 95/212 (44%), Gaps = 63/212 (29%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
++L + R+ L G++LS+ GE ++G G+GKSTL+++ L +P G I+
Sbjct: 1 LELRGITKRFGGVK--ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVV 1387
+DG ++S D R R GI V Y QL
Sbjct: 59 VDGKEVSFASPRDAR-RAGI---------AMV---------Y------------QL---- 83
Query: 1388 AAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII 1447
SVG+RQ++ + R + +++RLL +DE TA++ T AE++R+
Sbjct: 84 ------------------SVGERQMVEIARALARNARLLILDEPTAAL---TPAEVERLF 122
Query: 1448 R--EEFAA--CTIISIAHRIPTVMD-CDRVIV 1474
+ A +I I+HR+ V + DRV V
Sbjct: 123 KVIRRLRAQGVAVIFISHRLDEVFEIADRVTV 154
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 9e-21
Identities = 60/233 (25%), Positives = 110/233 (47%), Gaps = 40/233 (17%)
Query: 1268 VDLIDLQVRYRS--NTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGR 1325
+ + +L + Y L ++L I GE +G+VG +GSGKSTL ++ L +PS G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 1326 IIIDGIDISLLGLHDLRSRFGI---IPQEPVLFEGTV--RSNIDPI---------GQYSD 1371
I++DG L ++ + + Q+P ++ R + I S
Sbjct: 64 ILLDG--KPLAPKKRAKAFYRPVQMVFQDP---YSSLNPRRTVGRILSEPLRPHGLSKSQ 118
Query: 1372 EEIWKSLERCQLKDVVAAK-PDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDE 1430
+ I + L++ L + P +L SG GQRQ + + R ++ +LL +DE
Sbjct: 119 QRIAELLDQVGLPPSFLDRRPHEL------SG-----GQRQRIAIARALIPEPKLLILDE 167
Query: 1431 ATASVDSQTDAEIQRI---IREEFAACTIISIAHRIPTVMD--CDRVIVVDAG 1478
T+++D A+I + +++E T + I+H + +++ CDR+ V+D G
Sbjct: 168 PTSALDVSVQAQILNLLLELKKERGL-TYLFISHDL-ALVEHMCDRIAVMDNG 218
|
Length = 252 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 1e-20
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 1269 DLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIII 1328
+ ++ Y+ T +L ++L ++ GE I + G+ G+GK+TL ++ L++ S G I++
Sbjct: 1 RIENISFSYKKGT-EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59
Query: 1329 DGIDISLLGLHDLRSRFGIIPQEP--VLFEGTVRSNIDPIGQYSDEEIWKSLE--RCQLK 1384
+G I + R G + Q+ LF +VR + +E+ E LK
Sbjct: 60 NGKPIK---AKERRKSIGYVMQDVDYQLFTDSVREELL----LGLKELDAGNEQAETVLK 112
Query: 1385 DVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 1444
D+ L +L + S GQ+Q L + +L LL DE T+ +D + +
Sbjct: 113 DL------DLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG 166
Query: 1445 RIIREEFAA-CTIISIAHRIPTVMD-CDRVIVVDAG 1478
+IRE A +I I H + CDRV+++ G
Sbjct: 167 ELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANG 202
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 2e-20
Identities = 70/246 (28%), Positives = 114/246 (46%), Gaps = 40/246 (16%)
Query: 640 DDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK 699
+EVR S+ D L ++L++ +G++ AI+G GSGKS+LL ILG +
Sbjct: 4 SPEPLIEVRGVTKSFGDRV---ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP 60
Query: 700 ISGKVKVCGTT--------AYVAQTSW---IQNG------TIEENILFGLPMNRAKYGEV 742
G++ + G Y + Q G T+ EN+ F L + +
Sbjct: 61 DKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESL 120
Query: 743 VRVCCLEKDLEMMEYGDQTEIGERGIN-------LSGGQKQRIQLARAVYQDCDIYLLDD 795
+R L K LE+ +G RG LSGG ++R+ LARA+ D ++ LD+
Sbjct: 121 IRELVLMK-LEL--------VGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDE 171
Query: 796 VFSAVDAHTGSDIFKECVRGALK--GKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRY 852
S +D + + + E +R G T+I+VTH +D L + D + V+ +G ++ G
Sbjct: 172 PTSGLDPIS-AGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230
Query: 853 NALLNS 858
LL S
Sbjct: 231 EELLAS 236
|
Length = 263 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 2e-20
Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 14/129 (10%)
Query: 1309 STLIQVFFRLVEPSGGRIIIDGIDI-SLLGLHDLRSRFGIIPQEPVLF-EGTVRSNIDP- 1365
STL+++ L++P+ G I++DG D L LR R G++ Q+P LF E TVR N+
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1366 -IGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSR 1424
+ +D ++LER L D + +P +L S GQ+Q + + R +LK +
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVG--TL--------SGGQKQRVAIARALLKKPK 110
Query: 1425 LLFMDEATA 1433
LL +DE TA
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 2e-20
Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 10/198 (5%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSR 1344
+ G+ + GE G +G G+GK+T I++ L+ P+ G + G D+ + +R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV-VREPRKVRRS 67
Query: 1345 FGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERC-QLKDVVAAKPDKLDSLVADSG 1402
GI+PQ + E T R N++ +G+ ++ ER +L ++ + D V
Sbjct: 68 IGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELG-EAADRPVG--- 123
Query: 1403 DNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAH 1461
+S G R+ L + ++ +LF+DE T +D +T I IR TI+ H
Sbjct: 124 -TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTH 182
Query: 1462 RIPTV-MDCDRVIVVDAG 1478
+ CDR+ ++D G
Sbjct: 183 YMEEADKLCDRIAIIDHG 200
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 3e-20
Identities = 64/224 (28%), Positives = 101/224 (45%), Gaps = 55/224 (24%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILG-EMHKISGKVKVCGTTAYVAQTSWI 719
E LK I+L ++KG++ I+G GSGKS+LL + G E SG + V G + +
Sbjct: 16 EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD-SGSITVDGEDVG-DKKDIL 73
Query: 720 Q----------------NGTIEENILF------GLPMNRAKYGEVVRVCCLEKDLEMME- 756
+ + T+ EN+ L A+ EK LE++E
Sbjct: 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAR----------EKALELLEK 123
Query: 757 ---------YGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSD 807
Y Q LSGGQ+QR+ +ARA+ D + L D+ SA+D +
Sbjct: 124 VGLADKADAYPAQ---------LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGE 174
Query: 808 IFKECVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
+ A +G T+I+VTH++ F V D ++ M +G I++ G
Sbjct: 175 VLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEG 218
|
Length = 240 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 3e-20
Identities = 66/217 (30%), Positives = 109/217 (50%), Gaps = 18/217 (8%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDG- 1330
+L Y T LKGI ++I GE ++G G+GKSTL Q +++PS GRI+ DG
Sbjct: 10 ELNYNYSDGTH-ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGK 68
Query: 1331 -IDISLLGLHDLRSRFGIIPQEP--VLFEGTVRSNID--PIG-QYSDEEIWKSLERCQLK 1384
ID S GL LR G++ Q+P LF +V ++ + + ++E+ K ++ +
Sbjct: 69 PIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKR 128
Query: 1385 DVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 1444
+ DK + S GQ++ + + V++ ++L +DE TA +D +EI
Sbjct: 129 TGIEHLKDKPTHCL-------SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181
Query: 1445 RIIRE--EFAACTIISIAHRIPTV-MDCDRVIVVDAG 1478
+++ E + TII H I V + CD V V+ G
Sbjct: 182 KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 5e-20
Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 40/197 (20%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI-SGKVKVCGTT------ 710
+ L ++NL I+KG + AI+G GSGKS+LL +I+G + K SG+V + G
Sbjct: 9 GDKVILDDLNLTIEKGKMYAIIGESGSGKSTLL-NIIGLLEKFDSGQVYLNGQETPPLNS 67
Query: 711 -----------AYVAQT-SWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMME-- 756
Y+ Q + I+N T+EEN+ GL KY ++ + EK E +E
Sbjct: 68 KKASKFRREKLGYLFQNFALIENETVEENLDLGL-----KYKKLSKKEKREKKKEALEKV 122
Query: 757 --YGDQ-TEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS---DIFK 810
+I E LSGG++QR+ LARA+ + + L D+ ++D D+
Sbjct: 123 GLNLKLKQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLL 178
Query: 811 ECVRGALKGKTIILVTH 827
E +GKTII+VTH
Sbjct: 179 ELND---EGKTIIIVTH 192
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 8e-20
Identities = 60/208 (28%), Positives = 106/208 (50%), Gaps = 25/208 (12%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ-- 720
L +I+L+IK G+L A++G G+GKS+LL I G +G++++ G + ++
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 721 -------------NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERG 767
+ T+ +NI FGL + + + E +E+ L +++ + +R
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG---LADRY 134
Query: 768 IN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDI---FKECVRGALKGKTII 823
LSGGQ+QR+ LARA+ + + LLD+ F A+DA ++ ++ G T +
Sbjct: 135 PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRL--GVTTV 192
Query: 824 LVTH-QVDFLHNVDLILVMREGMIVQSG 850
VTH Q + L D ++V+ +G I Q G
Sbjct: 193 FVTHDQEEALELADRVVVLNQGRIEQVG 220
|
Length = 345 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 1e-19
Identities = 56/236 (23%), Positives = 99/236 (41%), Gaps = 43/236 (18%)
Query: 1272 DLQVRYRSNT--PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP----SGGR 1325
+L V + ++ ++ ++ + GE +G+VG +GSGKSTL L+ + G
Sbjct: 10 NLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGE 69
Query: 1326 IIIDGIDISLLGLHDLRS----RFGIIPQEP------------VLFEGTVRSNIDPIGQY 1369
+I+DG D+ L ++R R +I Q+P + E
Sbjct: 70 VILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS-RAE 128
Query: 1370 SDEEIWKSLERCQL--KDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLF 1427
+ + + LE+ L + P +L SG G RQ + + + +LL
Sbjct: 129 ARKRAVELLEQVGLPDPERRDRYPHQL------SG-----GMRQRVMIAMALALKPKLLI 177
Query: 1428 MDEATASVDSQTDAEI----QRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
DE T ++D T A+I + + RE ++ I H + V + DRV+V+ G
Sbjct: 178 ADEPTTALDVTTQAQILDLLKDLQREL--GMAVLFITHDLGVVAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 1e-19
Identities = 60/215 (27%), Positives = 105/215 (48%), Gaps = 23/215 (10%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILG--EMHKISGKVKVCGTT------ 710
L +++LEI+ G+L A++G G GK++LL +I G + ++G++ +
Sbjct: 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP 76
Query: 711 -----AYVAQT-SWIQNGTIEENILFGLPMNRAKYGEVV-RVCCLEKDLEMMEYGDQTEI 763
A + Q + + +E+N+ FGL + ++ RV K + + +
Sbjct: 77 HKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA 136
Query: 764 GERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR--GALKGKT 821
LSGG +QRI +ARA+ + D+ LLD+ SA+DA+ +++ +E L T
Sbjct: 137 -----QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELT 191
Query: 822 IILVTH-QVDFLHNVDLILVMREGMIVQSGRYNAL 855
I+ VTH Q D L D +M++G + G AL
Sbjct: 192 ILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 2e-19
Identities = 58/227 (25%), Positives = 108/227 (47%), Gaps = 36/227 (15%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
++L +++ + S VLK + L I GE + ++G +G GKSTL+++ L EP+ G I+
Sbjct: 4 LELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFE-GTVRSNI---DPIGQYSDEEI-WK---SLE 1379
IDG D++ L + ++ Q L+ TV NI + EI + +
Sbjct: 62 IDGRDVT--DLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAK 119
Query: 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
L+ ++ KP +L S GQRQ + L R +++ ++ +DE +++
Sbjct: 120 LLGLEHLLNRKPLQL-----------SGGQRQRVALARALVRKPKVFLLDEPLSNL---- 164
Query: 1440 DAEIQRIIREEFA------ACTIISIAHRIP--TVMDCDRVIVVDAG 1478
DA+++ ++R E T I + H + DR++V++ G
Sbjct: 165 DAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLA-DRIVVMNDG 210
|
Length = 338 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 2e-19
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 29/224 (12%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+++ + + +L G+ L + GE + ++G +GSGKSTL+++ L+ P G I+
Sbjct: 9 IEVRGVTKSFGDRV--ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66
Query: 1328 IDGIDI---SLLGLHDLRSRFGIIPQEPVLFEG-TVRSNID-PIGQYSDEEIWKSLERCQ 1382
IDG DI S L+++R R G++ Q+ LF TV N+ P+ +++ L
Sbjct: 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTK------LPESL 120
Query: 1383 LKDVVAAK-------PDKLDSLVAD-SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATAS 1434
++++V K D ++ SG G R+ + L R + LLF+DE T+
Sbjct: 121 IRELVLMKLELVGLRGAAADLYPSELSG-----GMRKRVALARAIALDPELLFLDEPTSG 175
Query: 1435 VDSQTDAEIQRIIREEFAA--CTIISIAHRIPTVMD-CDRVIVV 1475
+D + I +IRE A T+I + H + +++ DRV V+
Sbjct: 176 LDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVL 219
|
Length = 263 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 88.6 bits (221), Expect = 2e-19
Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 31/221 (14%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
+L Y + +L G++L++ GE + ++GR G+GK+TL++ L+ P G I DG
Sbjct: 5 NLNAGYGKSQ--ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGR 62
Query: 1332 DISLLGLHDLRSRFGI--IPQEPVLFEG-TVRSNIDPIGQY--SDEEIWKSLERCQLKDV 1386
DI+ L H+ R+R GI +P+ +F TV N+ +G Y + LER V
Sbjct: 63 DITGLPPHE-RARAGIGYVPEGRRIFPELTVEENLL-LGAYARRRAKRKARLER-----V 115
Query: 1387 VAAKP---DKLDSLVAD-SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATA----SVDSQ 1438
P ++ L SG G++Q+L + R ++ +LL +DE + + +
Sbjct: 116 YELFPRLKERRKQLAGTLSG-----GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE 170
Query: 1439 TDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
I+ + E TI+ + ++ DR V++ G
Sbjct: 171 IFEAIRELRDEGV---TILLVEQNARFALEIADRAYVLERG 208
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 2e-19
Identities = 58/211 (27%), Positives = 103/211 (48%), Gaps = 19/211 (9%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
+ ++L + GE +G++G G+GK+TL + +PS G +I G DI+ L H +
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIA 77
Query: 1344 RFGIIP--QEPVLFEG-TVRSNIDPIGQYSDEEI----WKSLERCQLKDVVAAKPDKLDS 1396
R GI Q LF G TV N+ +G ++ + + R + ++ + L+
Sbjct: 78 RLGIARTFQITRLFPGLTVLENV-AVGAHARLGLSGLLGRPRARKEEREARERARELLEF 136
Query: 1397 L----VADS-GDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASV-DSQTDAEIQRI--IR 1448
+ +AD N S GQ++ L + R + +LL +DE A + +T+ + I +R
Sbjct: 137 VGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELR 196
Query: 1449 EEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
+ TI+ I H + VM DR++V++ G
Sbjct: 197 DRGGV-TILLIEHDMKLVMGLADRIVVLNYG 226
|
Length = 250 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 3e-19
Identities = 67/282 (23%), Positives = 120/282 (42%), Gaps = 45/282 (15%)
Query: 614 ISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKG 673
S L + M+ REL + E E +EVR+ S + +++++ ++ G
Sbjct: 233 TSEDELVRLMVGRELEDLFPEPPEEGIGEPVLEVRN--LSGGGK-----VRDVSFTVRAG 285
Query: 674 DLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT--------------AYVA----Q 715
++ I G VG+G++ L ++ G SG++ + G AYV
Sbjct: 286 EILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKS 345
Query: 716 TSWIQNGTIEENILF--------GLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERG 767
+ + +I ENI ++R K + + L + + IG
Sbjct: 346 EGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAER--YIRRLRIKTPSPEQPIG--- 400
Query: 768 INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTH 827
LSGG +Q++ LAR + D + +LD+ +D ++I++ A +GK I++++
Sbjct: 401 -TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISS 459
Query: 828 QVD-FLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAA 868
++ L D ILVMREG IV L A++AA
Sbjct: 460 ELPELLGLSDRILVMREGRIVGE-----LDREEATEEAIMAA 496
|
Length = 500 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 3e-19
Identities = 66/229 (28%), Positives = 103/229 (44%), Gaps = 49/229 (21%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------- 709
G + LK++NLEI +G++ AI+G G+GKS+LL S+ G + SG++ G
Sbjct: 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGK 74
Query: 710 --------TAYVAQT-SWIQNGTIEENILFGLPMNRAKYGEVVRVC-------------- 746
+ Q + + ++ EN+L G R Y R
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLG----RLGYTSTWRSLFGLFSKEDKAQALD 130
Query: 747 CLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVD---AH 803
LE+ + +++ Q R LSGGQ+QR+ +ARA+ Q I L D+ +++D A
Sbjct: 131 ALER-VGILDKAYQ-----RASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAK 184
Query: 804 TGSDIFK-ECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSG 850
DI K G T+I+ HQVD D I+ ++ G IV G
Sbjct: 185 KVMDILKDINQE---DGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230
|
Length = 258 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 3e-19
Identities = 57/205 (27%), Positives = 88/205 (42%), Gaps = 35/205 (17%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYV-AQTSWIQN 721
LK+++ E+ +G+ ++G G+GKS+LL + G SG V V G + +
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNP 97
Query: 722 G-TIEENILF-GLPMN------RAKYGEVVRVCCLEK--DLEMMEYGDQTEIGERGINLS 771
T ENI G + K E++ L DL + Y S
Sbjct: 98 ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTY-------------S 144
Query: 772 GGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-----KGKTIILVT 826
G K R+ A A + DI L+D+V + DA F+E + L +GKT+ILV+
Sbjct: 145 SGMKARLAFAIATALEPDILLIDEVLAVGDAA-----FQEKCQRRLRELLKQGKTVILVS 199
Query: 827 HQVDFLHNV-DLILVMREGMIVQSG 850
H + + D LV+ +G I G
Sbjct: 200 HDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.2 bits (225), Expect = 4e-19
Identities = 70/231 (30%), Positives = 112/231 (48%), Gaps = 35/231 (15%)
Query: 1268 VDLIDLQVRYRSNTPLV--LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGR 1325
++L ++ + + L ++L I GE GV+G +G+GKSTLI+ L P+ GR
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1326 IIIDGIDISLL---GLHDLRSRFGIIPQEPVLFEG-TVRSNID-P--IGQYSDEEIWKSL 1378
+++DG D++ L L R + G+I Q L TV N+ P + EI +
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARV 121
Query: 1379 ERCQLKDVV--AAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVD 1436
+L ++V + K D+ + S GQ+Q + + R + + ++L DEAT+++D
Sbjct: 122 T--ELLELVGLSDKADRYPA-------QLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
Query: 1437 SQTDAEI----QRIIREEFAACTIISIAHRIPTVMD-----CDRVIVVDAG 1478
T I + I RE TI+ I H MD CDRV V+DAG
Sbjct: 173 PATTRSILELLKDINRE--LGLTIVLITHE----MDVVKRICDRVAVIDAG 217
|
Length = 343 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 6e-19
Identities = 62/203 (30%), Positives = 92/203 (45%), Gaps = 29/203 (14%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYV--AQTSWIQ 720
LK+I+ EI KG+ I+G G+GKS+LL I G SGKVKV G A + +
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDP 102
Query: 721 NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGE------RGINLSGGQ 774
T ENI + E+ EK E++E+ E+G+ + S G
Sbjct: 103 ELTGRENIYLRGLILGLTRKEI-----DEKVDEIIEF---AELGDFIDQPVK--TYSSGM 152
Query: 775 KQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKE-CVRG----ALKGKTIILVTHQV 829
R+ + A + + DI LLD+V + DA F+E C+ K KTI+LV+H +
Sbjct: 153 YARLAFSVATHVEPDILLLDEVLAVGDAA-----FQEKCLERLNELVEKNKTIVLVSHDL 207
Query: 830 DFLHNV-DLILVMREGMIVQSGR 851
+ D + + G I G
Sbjct: 208 GAIKQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 6e-19
Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 25/225 (11%)
Query: 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGK 703
+ V D +W NG L++ + + G + A+VG GSGKS+L +++G + SGK
Sbjct: 6 GIVVNDVTVTW--RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGK 63
Query: 704 VKVCGT----------TAYVAQTS---WIQNGTIEENILFGLP-----MNRAKYGEVVRV 745
+ + G AYV Q+ W +E+ ++ G + RAK + V
Sbjct: 64 ISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIV 123
Query: 746 CCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTG 805
++M+E+ +IGE LSGGQK+R+ LARA+ Q + LLD+ F+ VD T
Sbjct: 124 TAALARVDMVEF-RHRQIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE 178
Query: 806 SDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSG 850
+ I +GKT+++ TH + + VM +G ++ SG
Sbjct: 179 ARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASG 223
|
Length = 272 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 6e-19
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 30/209 (14%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV-----KVCGTTAYVAQTS 717
L ++L+IK+G+ ++G G GK++LL I G SG++ + + +
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVN 75
Query: 718 WI-QNG------TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGIN- 769
+ QN T+ ENI FGL + + E+ + E ++ R +
Sbjct: 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKE-----RVAEALDLVQLEGYANRKPSQ 130
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK------GKTII 823
LSGGQ+QR+ +ARA+ + + LLD+ A+D D+ E LK G T +
Sbjct: 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLE-----LKRLQKELGITFV 185
Query: 824 LVTH-QVDFLHNVDLILVMREGMIVQSGR 851
VTH Q + L D I VM +G I Q G
Sbjct: 186 FVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 7e-19
Identities = 74/226 (32%), Positives = 113/226 (50%), Gaps = 28/226 (12%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
+E RD +S+ D G E LK IN + +KG++ A++G G+GKS+L G + SG+V
Sbjct: 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 705 KVCGTT-AY-------VAQTSWI--QNG-------TIEENILFGLPMNRAKYGEVV--RV 745
+ G Y V +T I QN T+EE++ FG P+N E V RV
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFG-PLNLGLSKEEVEKRV 118
Query: 746 CCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTG 805
K + M + ++ +LSGGQK+R+ +A + +I +LD+ S +D
Sbjct: 119 KEALKAVGMEGFENKPP-----HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173
Query: 806 SDIFKECVRGALKGKTIILVTHQVDFLH-NVDLILVMREGMIVQSG 850
S I K +G TII+ TH VD + D + VM +G I++ G
Sbjct: 174 SQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEG 219
|
Length = 275 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 9e-19
Identities = 53/209 (25%), Positives = 101/209 (48%), Gaps = 20/209 (9%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTA------YVAQT 716
+++++ E ++G++T ++G G+GK++LL I + SGKV + G +
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77
Query: 717 SWI--QNG-----TIEENILFGLPMNRAKYGEV-VRVCCLEKDLEMMEYGDQTEIGERGI 768
+ + G T EN+ + +N E+ R+ L K L+++EY D+ R
Sbjct: 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDR-----RVG 132
Query: 769 NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQ 828
S G KQ++ +ARA+ D I +LD+ S +D T + +G+ +I +H
Sbjct: 133 EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHI 192
Query: 829 VDFLHNV-DLILVMREGMIVQSGRYNALL 856
+ + + D ++V+ +G +V G AL
Sbjct: 193 MQEVEALCDRVIVLHKGEVVLEGSIEALD 221
|
Length = 245 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 1e-18
Identities = 105/433 (24%), Positives = 191/433 (44%), Gaps = 39/433 (9%)
Query: 454 LQISVALILLYNCLGAS-VITTVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRM--KAT 510
++IS+ ++L+ G +TT+V +I ++F V+ + F+ +M N DS KA
Sbjct: 68 VEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFR-RLMNNADSDANAKAI 126
Query: 511 NEMLNYMRVIKFQAWE---DHFNKRILSFRESEFGWLTKFMYSISGNIIVMWSTPVLIST 567
+ +LN+ V F E ++ + ++ ++ + G + + L
Sbjct: 127 DSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIF--STGLRVM 184
Query: 568 LTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRE 627
+T + + L G + + L P+ S + QA+ + ++
Sbjct: 185 MTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFD------ 238
Query: 628 LVNESVERVEGCDDNIAVEVRDGVFSWDD-----ENGEECLKNINLEIKKGDLTAIVGTV 682
L++ E + D VR G ++ + + L I+ I G AIVG
Sbjct: 239 LLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGES 298
Query: 683 GSGKSSLLASILGEMHKISGKVKVCG------TTAY-------VAQTSWIQNGTIEENIL 729
G+GKS++L + SG + + G T V Q + + N TI NI
Sbjct: 299 GAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIK 358
Query: 730 FGLPMNRAKYGEVVRVCCLEKDLEMMEY---GDQTEIGERGINLSGGQKQRIQLARAVYQ 786
+G P A EV + + ++ G T +GERG+ LSGG+KQR+ +AR + +
Sbjct: 359 YGRPD--ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK 416
Query: 787 DCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMI 846
+ I +LD+ SA+D HT I + +R G+T +++ H++ + + D I+V+ G I
Sbjct: 417 NPPILILDEATSALDTHTEQAI-QAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRI 475
Query: 847 VQSGRYNALLNSG 859
V+ G + LL +G
Sbjct: 476 VERGTHEELLAAG 488
|
Length = 497 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 1e-18
Identities = 68/234 (29%), Positives = 114/234 (48%), Gaps = 40/234 (17%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASI-----LGEMHK 699
+E+RD + D+ LK+I+L+I KG++TA++G G GKS+LL + L
Sbjct: 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 700 ISGKVKVCGTTAYVAQTSWIQ---------------NGTIEENILFGLPMNRAKYGEVV- 743
G+V + G Y ++ G+I +N+ +GL ++ K E +
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 744 -RVCCLEKDLEMMEYGDQTEIGER--GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAV 800
RV E+ L D E+ +R + LSGGQ+QR+ LARA+ + ++ LLD+ SA+
Sbjct: 118 ERV---EEALRKAALWD--EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL 172
Query: 801 DAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNV----DLILVMREGMIVQSG 850
D + + I +E + K TI++VTH + D + G +V+ G
Sbjct: 173 DPISTAKI-EELIAELKKEYTIVIVTH---NMQQAARVADRTAFLLNGRLVEFG 222
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 20/206 (9%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK---ISGKVKVCG----------T 709
L +++L ++ G + AI+G+ GSGK++LL +I G + SG++ G
Sbjct: 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82
Query: 710 TAYVAQTS-WIQNGTIEENILFG--LPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGER 766
AYV Q + T+ E + + L + R + + +D+ + + G
Sbjct: 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK--RVEDVLLRDLALTRIGGNL 140
Query: 767 GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVT 826
+SGG+++R+ +A + D + +LD+ S +D+ T ++ + A + + +IL
Sbjct: 141 VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTI 200
Query: 827 HQ--VDFLHNVDLILVMREGMIVQSG 850
HQ D D IL++ G IV SG
Sbjct: 201 HQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 2e-18
Identities = 62/214 (28%), Positives = 104/214 (48%), Gaps = 35/214 (16%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------- 709
LK+++L + KG++ I+G G+GKS+L+ I G SG V V GT
Sbjct: 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80
Query: 710 ---TAYVAQT-SWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGE 765
+ Q + + + T+ EN+ LP+ A + E+ LE++E + +
Sbjct: 81 RRRIGMIFQHFNLLSSRTVFENV--ALPLEIAGVPKAEI---EERVLELLELVGLEDKAD 135
Query: 766 RGI-NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK------ 818
LSGGQKQR+ +ARA+ + + L D+ SA+D T I L+
Sbjct: 136 AYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILA-----LLRDINREL 190
Query: 819 GKTIILVTHQVDFLHNV-DLILVMREGMIVQSGR 851
G TI+L+TH+++ + + D + VM +G +V+ G
Sbjct: 191 GLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.0 bits (215), Expect = 2e-18
Identities = 70/221 (31%), Positives = 100/221 (45%), Gaps = 34/221 (15%)
Query: 653 SWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTA- 711
S+ +G L+NINL IKKG+ I+G GSGKS+L + G + GKV V G
Sbjct: 8 SYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTG 67
Query: 712 -------------YVAQTSWIQ--NGTIEENILFGLPMNRAKYGEVVRVCCLEK------ 750
V Q Q T+EE++ FG P N CL
Sbjct: 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG-PEN----------LCLPPIEIRKR 116
Query: 751 -DLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIF 809
D + E G + LSGGQ Q + LA + + + + D+V S +D +G +
Sbjct: 117 VDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176
Query: 810 KECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSG 850
+ + KGKTI+ +TH ++ LH+ D I+VM G IV G
Sbjct: 177 ERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEG 217
|
Length = 274 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 88.8 bits (220), Expect = 2e-18
Identities = 63/221 (28%), Positives = 107/221 (48%), Gaps = 26/221 (11%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT-------- 710
G++ + + +L I KG++ I+G GSGKS+ + + + +G++ + G
Sbjct: 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVE 64
Query: 711 ---------AYVAQT-SWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQ 760
V Q + + TI +N G + + E R EK LE+++
Sbjct: 65 LREVRRKKIGMVFQQFALFPHMTILQNTSLGPEL--LGWPEQER---KEKALELLKLVGL 119
Query: 761 TEIGERGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR-GALK 818
E R + LSGG +QR+ LARA+ + DI L+D+ FSA+D + E + A
Sbjct: 120 EEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL 179
Query: 819 GKTIILVTHQVD-FLHNVDLILVMREGMIVQSGRYNALLNS 858
KTI+ +TH +D + D I++M+ G IVQ G + +L +
Sbjct: 180 QKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 2e-18
Identities = 58/213 (27%), Positives = 92/213 (43%), Gaps = 33/213 (15%)
Query: 663 LKNINLEIK---KGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT--------- 710
L + L+I ++T I G G+GKS+LL I G G + + GT
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 711 --------AYVAQT-SWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQT 761
V Q + + + EN+ FGL R + R+ E +++
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNR---EDRISVDE----LLDLLGLD 122
Query: 762 EIGERGI-NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-- 818
+ R LSGG+KQR+ LARA+ ++ LLD+ FSA+D + E ++ K
Sbjct: 123 HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE-LKQIKKNL 181
Query: 819 GKTIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
+I VTH + + D I+VM +G + G
Sbjct: 182 NIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 2e-18
Identities = 65/214 (30%), Positives = 104/214 (48%), Gaps = 38/214 (17%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTA----------- 711
L +++L+I G+L A++G GSGK++LL I G SG + G A
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVG 77
Query: 712 YVAQT-SWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKD------LEMMEYGDQTEIG 764
+V Q + ++ T+ +N+ FGL + R E L++++ +
Sbjct: 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSE----RPPEAEIRAKVHELLKLVQL---DWLA 130
Query: 765 ERGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK----- 818
+R LSGGQ+QR+ LARA+ + + LLD+ F A+DA + KE +R L+
Sbjct: 131 DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK----VRKE-LRRWLRRLHDE 185
Query: 819 -GKTIILVTH-QVDFLHNVDLILVMREGMIVQSG 850
T + VTH Q + L D ++VM +G I Q G
Sbjct: 186 LHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVG 219
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 2e-18
Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 25/205 (12%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP-SG----GRI 1326
DL + Y LK I L I + ++G +G GKSTL++ R+ + G G +
Sbjct: 12 DLNLYY--GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEV 69
Query: 1327 IIDGIDI--SLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYS--------DEEIWK 1376
++DG +I + + +LR R G++ Q+P F ++ N+ G DE +
Sbjct: 70 LLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNV-AYGLRLHGIKDKELDEIVES 128
Query: 1377 SLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVD 1436
SL++ L D V D+L S S GQ+Q LC+ R + +L MDE T+++D
Sbjct: 129 SLKKAALWDEV---KDRLH----KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALD 181
Query: 1437 SQTDAEIQRIIREEFAACTIISIAH 1461
+ +I+ +I E TI+ + H
Sbjct: 182 PISTLKIEELITELKKKYTIVIVTH 206
|
Length = 253 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 2e-18
Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 22/215 (10%)
Query: 1274 QVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDI 1333
QV Y + +L I+LS+ GE I + G +G GKSTL+++ L+ P+ G ++ +G D+
Sbjct: 8 QVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDV 67
Query: 1334 SLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKP-- 1391
S L R + Q P LF TV N+ I+ R + D AA
Sbjct: 68 STLKPEAYRQQVSYCAQTPALFGDTVEDNL----------IFPWQIRNRRPDRAAALDLL 117
Query: 1392 ---DKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII- 1447
DS++ + S G++Q + L R + ++L +DE T+++D I+ +I
Sbjct: 118 ARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIH 177
Query: 1448 ---REEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
RE+ A ++ I H + D+VI + G
Sbjct: 178 RYVREQNVA--VLWITHDKDQAIRHADKVITLQPG 210
|
Length = 223 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 3e-18
Identities = 63/216 (29%), Positives = 105/216 (48%), Gaps = 39/216 (18%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT--TAYVA------ 714
L +++LEI KG++ I+G G+GKS+LL I SG V V G TA
Sbjct: 22 LDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81
Query: 715 --QTSWI-QN------GTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGDQTE 762
+ I Q+ T+ EN+ F L + +A+ ++ E++E
Sbjct: 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAE--------IKQRVAELLE---LVG 130
Query: 763 IGERG----INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRG--A 816
+ ++ LSGGQKQR+ +ARA+ + I L D+ SA+D T I E ++
Sbjct: 131 LSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSIL-ELLKDINR 189
Query: 817 LKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGR 851
G TI+L+TH+++ + + D + V+ +G +V+ G
Sbjct: 190 ELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225
|
Length = 339 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 3e-18
Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 38/214 (17%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILG-EMHKISGKVKVCGTTAYVAQTS 717
LK I+L +KKG++ I+G GSGKS+LL I E SG + + G + +
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD-SGTIIIDGLKLTDDKKN 70
Query: 718 WIQ----------------NGTIEENILFGL----PMNRAKYGEVVRVCCLEKDLEMMEY 757
+ + T+ ENI M++A E + +E
Sbjct: 71 INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKA-----------EAEERALEL 119
Query: 758 GDQTEIGERG----INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECV 813
++ + ++ LSGGQ+QR+ +ARA+ + + L D+ SA+D ++
Sbjct: 120 LEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK 179
Query: 814 RGALKGKTIILVTHQVDFLHNV-DLILVMREGMI 846
A +G T+++VTH++ F V D ++ M +G I
Sbjct: 180 DLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 3e-18
Identities = 66/218 (30%), Positives = 109/218 (50%), Gaps = 28/218 (12%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------------ 710
+ +++L++++G++ I+G GSGKS+LL I + SGKV + G
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 711 -----AYVAQT-SWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTE-- 762
+ V Q+ + + + T+ EN+ FGL + R + LE++
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEV--QGVPRAEREERAAEALELVGLEGWEHKY 157
Query: 763 IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR-GALKGKT 821
E LSGG +QR+ LARA+ D DI L+D+ FSA+D ++ E +R A KT
Sbjct: 158 PDE----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKT 213
Query: 822 IILVTHQVD-FLHNVDLILVMREGMIVQSGRYNALLNS 858
I+ +TH +D L D I +M++G +VQ G +L +
Sbjct: 214 IVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 4e-18
Identities = 64/219 (29%), Positives = 102/219 (46%), Gaps = 37/219 (16%)
Query: 1279 SNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG- 1337
S L L + L + GE + ++GR GSGKST+ + L+ PS G++ +DG+D S
Sbjct: 20 STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEEN 79
Query: 1338 LHDLRSRFGIIPQEP------------VLFEGTVRSNIDPIGQYSDEEIWK----SLERC 1381
L D+R++ G++ Q P V F G I P EEI + SL++
Sbjct: 80 LWDIRNKAGMVFQNPDNQIVATIVEEDVAF-GPENLGIPP------EEIRERVDESLKKV 132
Query: 1382 QLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDA 1441
+ + P L SG GQ+Q + + ++ + DE TA +D
Sbjct: 133 GMYEYRRHAPHLL------SG-----GQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRR 181
Query: 1442 EIQRIIRE--EFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
E+ I+E + TII I H + ++ DR+IV+D+G
Sbjct: 182 EVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSG 220
|
Length = 280 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 5e-18
Identities = 55/217 (25%), Positives = 100/217 (46%), Gaps = 27/217 (12%)
Query: 1276 RYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISL 1335
Y L+ ++ I GE + + G +G+GKSTL+++ + P+ G+I+++G D+S
Sbjct: 10 AYP-GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSR 68
Query: 1336 LGLHD---LRSRFGIIPQE-PVLFEGTVRSNID---PIGQYSDEEIWK----SLERCQLK 1384
L + LR + G++ Q+ +L + TV N+ + EI + L+ LK
Sbjct: 69 LKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK 128
Query: 1385 DVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 1444
A P +L S G++Q + + R ++ +L DE T ++D EI
Sbjct: 129 HKARALPSQL-----------SGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM 177
Query: 1445 RIIREEF--AACTIISIAHRIPTVMDCD-RVIVVDAG 1478
R+ EE T++ H + V RV+ ++ G
Sbjct: 178 RLF-EEINRLGTTVLMATHDLELVNRMRHRVLALEDG 213
|
Length = 223 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 6e-18
Identities = 56/225 (24%), Positives = 100/225 (44%), Gaps = 31/225 (13%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+++ DL Y S ++ ++ GE G++G G+GK+TL+++ L+ P G++
Sbjct: 2 LEVTDLTKSYGSKVQ-AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQE-PVLFEGTVRSNIDPIG---QYSDEEIWKSLE---- 1379
IDG+D +R + G++ E + T R N+ S +EI +
Sbjct: 61 IDGVDTVRDPS-FVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSK 119
Query: 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
R QL + LD V +S G +Q + + R ++ +L +DE T+ +D +T
Sbjct: 120 RLQLLEY-------LDRRVG----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT 168
Query: 1440 DAEIQRIIREEFAAC-----TIISIAHRIPTVMD-CDRVIVVDAG 1478
+R + +I +H + V CDRVIV+ G
Sbjct: 169 ----RRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKG 209
|
Length = 245 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 7e-18
Identities = 66/209 (31%), Positives = 105/209 (50%), Gaps = 26/209 (12%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
+ + L+I GE + ++G +GSGK+T +++ RL+EP+ G I+IDG DIS L +LR
Sbjct: 16 AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRR 75
Query: 1344 RFGIIPQEPVLFEG-TVRSNIDPIGQ---YSDEEIWKS----LERCQL--KDVVAAKPDK 1393
+ G + Q+ LF TV NI + + + E I K L+ L + P +
Sbjct: 76 KIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHE 135
Query: 1394 LDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE---E 1450
L SG GQ+Q + + R + +L MDE ++D T ++Q I+E E
Sbjct: 136 L------SG-----GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE 184
Query: 1451 FAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
TI+ + H I + DR+ V+DAG
Sbjct: 185 LGK-TIVFVTHDIDEALKLADRIAVMDAG 212
|
Length = 309 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 7e-18
Identities = 62/222 (27%), Positives = 114/222 (51%), Gaps = 22/222 (9%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+ + + RY LK ++ S++ GE + +VG GSGKSTL ++ L+ P G I
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEP-VLFEG-TVRSNI----DPIGQYSDEEIWK---SL 1378
+ G+ +S + D+R + G++ Q P F G TV+ ++ + IG +E + + +L
Sbjct: 66 VGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQAL 125
Query: 1379 ERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQ 1438
+ ++D + +P +L SG GQ+Q + + V+ ++ +DEAT+ +D +
Sbjct: 126 RQVGMEDFLNREPHRL------SG-----GQKQRVAIAGVLALQPDIIILDEATSMLDPR 174
Query: 1439 TDAEIQRIIRE--EFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
E+ +R+ E T++SI H + DRVIV++ G
Sbjct: 175 GRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKG 216
|
Length = 279 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 8e-18
Identities = 66/228 (28%), Positives = 105/228 (46%), Gaps = 33/228 (14%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+++ + R+ ++LS+ GE ++G G+GKSTL+++ F L +P G I
Sbjct: 5 LEMRGITKRFPGVV--ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR 62
Query: 1328 IDGIDISLLGLHD-LRSRFGIIPQEPVLFEG-TVRSNI-----DPIGQYSD-----EEIW 1375
+DG ++ + D +R G++ Q +L TV NI G D I
Sbjct: 63 VDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIK 122
Query: 1376 KSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASV 1435
+ ER L P D+ VAD SVG++Q + + + + + +RLL +DE TA +
Sbjct: 123 ELSERYGL-------PVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVL 171
Query: 1436 DSQTDAEIQRIIR--EEFAAC--TIISIAHRIPTVMD-CDRVIVVDAG 1478
T E + AA TII I H++ VM DRV V+ G
Sbjct: 172 ---TPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRG 216
|
Length = 501 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 9e-18
Identities = 65/220 (29%), Positives = 106/220 (48%), Gaps = 33/220 (15%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASI-----LGEMHKISGKVKVCGTTAY 712
+E LKNINL+I K +TA++G G GKS+LL S+ L +I GKV G Y
Sbjct: 12 GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIY 71
Query: 713 ---------------VAQTSWIQNGTIEENILFGLPM----NRAKYGEVVRVCCLEKDLE 753
V Q +I +NI +G + ++ + E+V E+ L+
Sbjct: 72 DKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIV-----EESLK 126
Query: 754 MMEYGDQ--TEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKE 811
D+ + + + LSGGQ+QR+ +ARA+ + ++ LLD+ SA+D I +E
Sbjct: 127 KAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKI-EE 185
Query: 812 CVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
++ K TI++VTH + + D +G +V+ G
Sbjct: 186 LIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYG 225
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 9e-18
Identities = 68/211 (32%), Positives = 103/211 (48%), Gaps = 36/211 (17%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--TTA--------- 711
LK+I+L +KKG+ ++G G GK++LL I G + +G + G T
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYG 79
Query: 712 YVAQT-SWIQNGTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERG 767
V Q+ + N T+ +NI +GL M RA+ E V E+++ +
Sbjct: 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVA--------ELLDLVGLPGSERKY 131
Query: 768 IN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK------GK 820
LSGGQ+QR+ LARA+ + LLD+ SA+DA +E +R ++ G
Sbjct: 132 PGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARV-----REHLRTEIRQLQRRLGV 186
Query: 821 TIILVTH-QVDFLHNVDLILVMREGMIVQSG 850
T I+VTH Q + L D I+VM G+I Q G
Sbjct: 187 TTIMVTHDQEEALSMADRIVVMNHGVIEQVG 217
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 1e-17
Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 31/219 (14%)
Query: 1276 RYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISL 1335
RY V + L I GE + ++G +GSGK+T +++ RL+EP+ G I IDG DI
Sbjct: 9 RYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIRE 67
Query: 1336 LGLHDLRSRFGIIPQEPVLF-EGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKL 1394
+LR + G + Q+ LF TV NI + + W + + D+L
Sbjct: 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKL---LKWPKEKI-------RERADEL 117
Query: 1395 DSLV----ADSGDNW----SVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRI 1446
+LV A+ D + S GQ+Q + + R + LL MDE ++D T ++Q
Sbjct: 118 LALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQ-- 175
Query: 1447 IREEFAAC------TIISIAHRI-PTVMDCDRVIVVDAG 1478
EEF TI+ + H I DR+ ++ G
Sbjct: 176 --EEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 61/258 (23%), Positives = 112/258 (43%), Gaps = 41/258 (15%)
Query: 644 AVEVRDGVFSWD-DENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISG 702
+ VR+ + + L N++LEI++G+ IVG GSGKS+L + G SG
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 703 KVKVCG--------TTAYVAQTSWIQ---------NGTIEENILFGLPMNRAKYGEVVRV 745
+ + G A+ + T+ + P+ + +
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL--SEPLRPHGLSKSQQ- 119
Query: 746 CCLEKDLEMMEY-GDQTEIGERGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAH 803
+ E+++ G +R + LSGGQ+QRI +ARA+ + + +LD+ SA+D
Sbjct: 120 ----RIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVS 175
Query: 804 TGS---DIFKECVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLNSG 859
+ ++ E + +G T + ++H + + ++ D I VM G IV+ G LL+
Sbjct: 176 VQAQILNLLLELKKE--RGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHP 233
Query: 860 MDFGALVAAHETSMELVE 877
+H + EL+E
Sbjct: 234 --------SHPYTRELLE 243
|
Length = 252 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-17
Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 26/217 (11%)
Query: 1270 LIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIID 1329
L ++ ++ +L + L+I G+ ++G +GSGKSTL+ + L + G++ ++
Sbjct: 1 LKNISKKFGDKV--ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN 58
Query: 1330 GIDISLLGLHD----LRSRFGIIPQEPVLFEG-TVRSNIDPIGQYS-------DEEIWKS 1377
G + L R + G + Q L E TV N+D +Y E+ ++
Sbjct: 59 GQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEA 118
Query: 1378 LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS 1437
LE+ L + K +L SG G++Q + L R +LK L+ DE T S+D
Sbjct: 119 LEKVGLNLKLKQKIYEL------SG-----GEQQRVALARAILKPPPLILADEPTGSLDP 167
Query: 1438 QTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVI 1473
+ E+ ++ E I I P V DRVI
Sbjct: 168 KNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVI 204
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 2e-17
Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 38/223 (17%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------- 708
+ + +L++++G++ I+G GSGKS+L+ + + G++ V G
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 709 ---TTAYVAQT-SWIQNGTIEENILFGLPMN-------RAKYGEVVRVCCLEKDLEMMEY 757
+ V Q+ + + + T+ EN+ FGL + + E + + LE Y
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEG------Y 157
Query: 758 GDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR-GA 816
D+ E LSGG +QR+ LARA+ D DI L+D+ FSA+D +++ E + A
Sbjct: 158 ADKY-PNE----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA 212
Query: 817 LKGKTIILVTHQVD-FLHNVDLILVMREGMIVQSGRYNALLNS 858
KTI+ +TH +D L D I +M++G IVQ G +L +
Sbjct: 213 KLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255
|
Length = 386 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-17
Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 1277 YRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLL 1336
+ ++G++ + GE G++G G+GK+T I++ L++P+ GR + G D+ +
Sbjct: 8 KKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDV-VR 66
Query: 1337 GLHDLRSRFGIIPQEPVLFEG-TVRSNIDPIGQ---YSDEEIWKSLERCQLKDVVAAKPD 1392
++R R GI+ Q+ + + T N+ + E + ++ +L D V +
Sbjct: 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERID--ELLDFVGLL-E 123
Query: 1393 KLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR---E 1449
D LV +S G R+ L + R ++ +LF+DE T +D QT A + I E
Sbjct: 124 AADRLVK----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKE 179
Query: 1450 EFAACTIISIAHRIPTVMD-----CDRVIVVDAG 1478
EF TI+ H M+ CDRV ++D G
Sbjct: 180 EFGM-TILLTTH----YMEEAEQLCDRVAIIDHG 208
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 2e-17
Identities = 65/243 (26%), Positives = 104/243 (42%), Gaps = 54/243 (22%)
Query: 1272 DLQVRYRSNTPLV--LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP-----SGG 1324
+L V + ++ +V + G++ + GE +G+VG +GSGKS L + L+ GG
Sbjct: 6 NLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGG 65
Query: 1325 RIIIDGIDISLLG---LHDLR-SRFGIIPQEPVL-----------FEGTVRSNIDPIGQY 1369
I+ DG D+ L L +R +I Q+P+ +R +
Sbjct: 66 EILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH---GKGL 122
Query: 1370 SDEEIWKSLERCQLKDVVAAKPDK-LDS----LVADSGDNWSVGQRQLLCLGRVM----- 1419
S +E + L+ V P++ L S L SG G RQ RVM
Sbjct: 123 SKKEAKERAIEL-LELVGIPDPERRLKSYPHEL---SG-----GMRQ-----RVMIAMAL 168
Query: 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIRE---EFAACTIISIAHRIPTVMD-CDRVIVV 1475
+ +LL DE T ++D A+I +++E E +I I H + V + DRV V+
Sbjct: 169 ALNPKLLIADEPTTALDVTVQAQILDLLKELQREK-GTALILITHDLGVVAEIADRVAVM 227
Query: 1476 DAG 1478
AG
Sbjct: 228 YAG 230
|
Length = 316 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 3e-17
Identities = 52/230 (22%), Positives = 104/230 (45%), Gaps = 41/230 (17%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+++ ++ + T + I+L I GE + ++G +G GK+TL+++ +PS G I+
Sbjct: 6 LEIRNVSKSFGDFT--AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNI--------DPIGQYSDEEIWKSL 1378
+DG DI+ + + G++ Q LF TV N+ + ++L
Sbjct: 64 LDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEAL 121
Query: 1379 ERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQ 1438
E L+ KP +L SG GQ+Q + L R ++ ++L +DE +++D++
Sbjct: 122 ELVGLEGFADRKPHQL------SG-----GQQQRVALARALVPEPKVLLLDEPLSALDAK 170
Query: 1439 TDAEIQRIIREEFAACTIISIAHRIPTVM---D-------CDRVIVVDAG 1478
++++ ++E + I V D DR+ V++ G
Sbjct: 171 LREQMRKELKE------LQRELG-ITFVYVTHDQEEALAMSDRIAVMNDG 213
|
Length = 352 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 3e-17
Identities = 65/234 (27%), Positives = 114/234 (48%), Gaps = 26/234 (11%)
Query: 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKIS 701
+ +EV D F + D G + LK ++L I +G TA++G G+GKS+LL + G
Sbjct: 2 DNIIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR 59
Query: 702 GKVKVCGTTAYVAQTSWIQN---------------GTIEENILFGLPMNRAKYGEVV--R 744
G+VKV G W+++ T+ +++ FG P+N + V R
Sbjct: 60 GRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFG-PVNMGLDKDEVERR 118
Query: 745 VCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHT 804
V K + M ++ D+ +LS GQK+R+ +A + D D+ +LD+ + +D
Sbjct: 119 VEEALKAVRMWDFRDKPP-----YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRG 173
Query: 805 GSDIFKECVRGALKGKTIILVTHQVDF-LHNVDLILVMREGMIVQSGRYNALLN 857
+ + R +GKT+I+ TH VD D ++V++EG ++ G + L +
Sbjct: 174 QETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTD 227
|
Length = 274 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 3e-17
Identities = 60/214 (28%), Positives = 111/214 (51%), Gaps = 22/214 (10%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------TTAYVAQT 716
L +++L+I KG +T+I+G G+GKS+LL+ + + K SG++ + G + +A+
Sbjct: 17 LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKK 76
Query: 717 SWI---QNG-----TIEENILFG-LPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERG 767
I +N T+ + + FG P ++ + + E +EY ++ +R
Sbjct: 77 LSILKQENHINSRLTVRDLVGFGRFPYSQGR----LTKEDRRIINEAIEYLHLEDLSDRY 132
Query: 768 IN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILV 825
++ LSGGQ+QR +A + QD D LLD+ + +D I K R A + GKTI++V
Sbjct: 133 LDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVV 192
Query: 826 THQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858
H ++F D I+ ++ G +V+ G + ++
Sbjct: 193 LHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226
|
Length = 252 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 6e-17
Identities = 56/202 (27%), Positives = 99/202 (49%), Gaps = 36/202 (17%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE---PSG-GRII 1327
+L +R L L + + GE++ + G +G+GK++L R + P G GRI
Sbjct: 397 NLSLRTPDGQTL-LSELNFEVRPGERLLITGESGAGKTSL----LRALAGLWPWGSGRIS 451
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNI---DPIGQYSDEEIWKSLERCQLK 1384
+ D F +PQ P L +GT+R + + +SD E+ L + L
Sbjct: 452 MPA---------DSALLF--LPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLG 500
Query: 1385 DVVAAKPDKLDSLVADSGDNW----SVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTD 1440
D+ ++LD D W S G++Q L R++L + +F+DEAT+++D +T+
Sbjct: 501 DLA----ERLDEE-----DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETE 551
Query: 1441 AEIQRIIREEFAACTIISIAHR 1462
+ ++++EE T+IS+ HR
Sbjct: 552 DRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 8e-17
Identities = 72/213 (33%), Positives = 108/213 (50%), Gaps = 36/213 (16%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-----------TA 711
L +I+L+I G + A++G GSGK++LL I G H+ SG ++ GT
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG 77
Query: 712 YVAQT-SWIQNGTIEENILFG---LPMNRAKYGEVVR--VCCLEKDLEMMEYGDQTEIGE 765
+V Q + ++ T+ +NI FG LP ++ V L LEM++ + +
Sbjct: 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQL---LEMVQLA---HLAD 131
Query: 766 R-GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR------GALK 818
R LSGGQKQR+ LARA+ + I LLD+ F A+DA + KE R LK
Sbjct: 132 RYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ----VRKELRRWLRQLHEELK 187
Query: 819 GKTIILVTH-QVDFLHNVDLILVMREGMIVQSG 850
T + VTH Q + + D ++VM +G I Q+G
Sbjct: 188 -FTSVFVTHDQEEAMEVADRVVVMSQGNIEQAG 219
|
Length = 353 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 9e-17
Identities = 58/215 (26%), Positives = 95/215 (44%), Gaps = 34/215 (15%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWI--- 719
L +++ IKKG+ +VG GSGKS+L +ILG + SG + G
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
Query: 720 --------QNG--------TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEI 763
Q+ TI E I L ++ + R L ++ G E+
Sbjct: 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARK--EAVLLLLVGVGLPEEV 138
Query: 764 GERGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDI---FKECVRGALK- 818
R + LSGGQ+QR+ +ARA+ + + + D+ SA+D + I K+ L+
Sbjct: 139 LNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK-----LQE 193
Query: 819 --GKTIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
G T++ +TH + + + D + VM G IV+ G
Sbjct: 194 ELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 1e-16
Identities = 51/205 (24%), Positives = 96/205 (46%), Gaps = 32/205 (15%)
Query: 660 EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG----------- 708
LKN++ ++K G+ IVG G+GKS+L+ ++ + GK+++ G
Sbjct: 21 PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80
Query: 709 --TTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGER 766
+ + Q + +GTI N+ + E D E+ + E
Sbjct: 81 RSSLTIIPQDPTLFSGTIRSNL--------DPFDE-------YSDEEIYG---ALRVSEG 122
Query: 767 GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVT 826
G+NLS GQ+Q + LARA+ + + +LD+ +++D T + I ++ +R TI+ +
Sbjct: 123 GLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI-QKTIREEFTNSTILTIA 181
Query: 827 HQVDFLHNVDLILVMREGMIVQSGR 851
H++ + + D ILVM G + +
Sbjct: 182 HRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 1e-16
Identities = 61/227 (26%), Positives = 109/227 (48%), Gaps = 29/227 (12%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
++ I++ Y + T L GI +SI GE + +VG +G+GKSTL+++ ++ P+ G I
Sbjct: 1 IEFINVTKTYPNGTA-ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 1328 IDGIDISLLGLHD-----LRSRFGIIPQE-PVLFEGTVRSNID---PIGQYSDEEIWK-- 1376
++G D+S L LR + G++ Q+ +L + V N+ + EI K
Sbjct: 60 VNGQDVS--DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRV 117
Query: 1377 --SLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATAS 1434
+LE L A P +L S G++Q + + R ++ +L DE T +
Sbjct: 118 PAALELVGLSHKHRALPAEL-----------SGGEQQRVAIARAIVNSPTILIADEPTGN 166
Query: 1435 VDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDC--DRVIVVDAGL 1479
+D T EI ++++ A T + +A ++D RVI ++ G
Sbjct: 167 LDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGK 213
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 1e-16
Identities = 57/231 (24%), Positives = 108/231 (46%), Gaps = 27/231 (11%)
Query: 1268 VDLIDLQVRYRSNTPL---VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGG 1324
+ L + + TPL L G++L I G+ + V+G G+GKSTL+ ++P+ G
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 1325 RIIIDGIDISLLGLHDLRSRFGIIPQEPVL---FEGTVRSNIDPIGQYSDEEIWKSLE-- 1379
+I+IDG+D++ + + + Q+P+ E T+ N+ + S
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNE 121
Query: 1380 --RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS 1437
R ++ +A L++ ++D S GQRQ L L L ++L +DE TA++D
Sbjct: 122 RRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDP 181
Query: 1438 QTDAEIQRIIREEFAACTIISIAHRIPTVM---------DC-DRVIVVDAG 1478
+T + + + I+ H++ T+M D +R+I++ +G
Sbjct: 182 KTAEFVMELTAK------IVE-EHKLTTLMVTHNMEDALDYGNRLIMLHSG 225
|
Length = 263 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 2e-16
Identities = 134/565 (23%), Positives = 242/565 (42%), Gaps = 99/565 (17%)
Query: 347 GPVLIQRFVDFTSGKSS------SFYEGYYLVLILLVAKFVEVFSTHQFN---FNSQKLG 397
GP+LI F+D K + + Y+ L LL A H FN +G
Sbjct: 42 GPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAA------GLHYAQSLLFNRAAVG 95
Query: 398 MLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQIS 457
++ + L T + LR SA VGQ+++ + D + + D+ + + A L S
Sbjct: 96 VVQQ--LRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLR----S 149
Query: 458 VALILLYNCLGASVITTV-----VGIIGVMIF----VVMGTKRNNRFQFNVMKNRDSRM- 507
ALI GA ++ + ++ +MIF VVM + R+ +++ + +
Sbjct: 150 AALI------GAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQ--RYSTPIVRRVRAYLA 201
Query: 508 ---KATNEMLNYMRVIKFQAWEDHFNKRILSFRESEF----------GWLTKFMYSISGN 554
NE++N M VI+ + F +R+ S + G+L + + S
Sbjct: 202 DINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLS---- 257
Query: 555 IIVMWSTPVLISTLTFATALLFGVP----LDAGSVFTTTTIFKILQEPIRNFP--QSMIS 608
++S +L L +LFG ++ G ++ + L EP+ QSM
Sbjct: 258 ---LFSALILCGLL-----MLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSM-- 307
Query: 609 LSQAMISLARLDKYMLSRELVNESVERVEGCDDNI----AVEVRDGVFSWDDENGEECLK 664
L QA+++ R+ + M + + G DD +++ + F++ D L+
Sbjct: 308 LQQAVVAGERVFELM-------DGPRQQYGNDDRPLQSGRIDIDNVSFAYRD--DNLVLQ 358
Query: 665 NINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------TTA 711
NINL + A+VG GSGKS+L + ++G G++++ G A
Sbjct: 359 NINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418
Query: 712 YVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLS 771
V Q + T N+ G ++ + + + L + + G T +GE+G NLS
Sbjct: 419 MVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLS 478
Query: 772 GGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDF 831
GQKQ + LAR + Q I +LD+ + +D+ T I ++ + + T++++ H++
Sbjct: 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI-QQALAAVREHTTLVVIAHRLST 537
Query: 832 LHNVDLILVMREGMIVQSGRYNALL 856
+ D ILV+ G V+ G + LL
Sbjct: 538 IVEADTILVLHRGQAVEQGTHQQLL 562
|
Length = 592 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (210), Expect = 2e-16
Identities = 62/254 (24%), Positives = 122/254 (48%), Gaps = 63/254 (24%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIII-DGIDISLLGLHDLR 1342
+ K + ++ G+ VG +G GKST++++ RL +P+ G III D ++ + L R
Sbjct: 400 IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWR 459
Query: 1343 SRFGIIPQEPVLFEGTVRSNI----------DPIGQYSDE-------------------- 1372
S+ G++ Q+P+LF ++++NI + + Y +E
Sbjct: 460 SKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCA 519
Query: 1373 ----------------EIWKSLERCQLKDVV------------AAKPDKLDSLVADSGDN 1404
E+ K+ + + +VV +A PDK ++LV +
Sbjct: 520 GDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASK 579
Query: 1405 WSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII---REEFAACTIISIAH 1461
S GQ+Q + + R ++++ ++L +DEAT+S+D++++ +Q+ I + TII IAH
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITII-IAH 638
Query: 1462 RIPTVMDCDRVIVV 1475
R+ T+ + + V+
Sbjct: 639 RLSTIRYANTIFVL 652
|
Length = 1466 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 2e-16
Identities = 48/218 (22%), Positives = 90/218 (41%), Gaps = 42/218 (19%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW---- 718
+ +++ ++++G+ +VG GSGKS+L + G + SG + G +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 719 --IQNG------------TIEENI----LFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQ 760
IQ T+ + + + A+ V L
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLP------- 419
Query: 761 TEIGERGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK- 818
E +R + LSGGQ+QR+ +ARA+ + + +LD+ SA+D + + LK
Sbjct: 420 PEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN-----LLKD 474
Query: 819 -----GKTIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
G T + ++H + + + D + VM +G IV+ G
Sbjct: 475 LQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG 512
|
Length = 539 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (199), Expect = 2e-16
Identities = 68/215 (31%), Positives = 98/215 (45%), Gaps = 27/215 (12%)
Query: 1277 YRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDI-SL 1335
Y TP L+ I L I GE IG++G+ GSGKSTL L+ P G++++ GID
Sbjct: 11 YPDGTP-ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDF 69
Query: 1336 LGLHDLRSRFGIIPQEP-VLFEG-TVRSN---------IDPIGQYSDEEIWKSLERCQLK 1384
L +R GI+ Q P F G TV + + PI EI K ++R
Sbjct: 70 SKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPI------EIRKRVDR---- 119
Query: 1385 DVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT-DAEI 1443
A L+ S S GQ Q + L ++ L DE T+ +D + A +
Sbjct: 120 ---ALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176
Query: 1444 QRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
+RI + TI+ I H + + D DR+IV+D G
Sbjct: 177 ERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 2e-16
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 22/218 (10%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
++ +Y+S+ LK ++ +I G+ +VG GSGKST+ ++ + + G I +
Sbjct: 12 NVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQ 71
Query: 1332 DISLLGLHDLRSRFGIIPQEPV-LFEG-TVRSNI-----DPIGQYSD--EEIWKSLERCQ 1382
I+ LR GI+ Q P F G V+ ++ + Y + + ++L++
Sbjct: 72 AITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVD 131
Query: 1383 LKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAE 1442
+ + +P+ L S GQ+Q + + V+ + ++ +DEAT+ +D
Sbjct: 132 MLERADYEPNAL-----------SGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQN 180
Query: 1443 IQRIIRE--EFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
+ ++R+ TIISI H + M+ D VIV++ G
Sbjct: 181 LLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 2e-16
Identities = 73/289 (25%), Positives = 111/289 (38%), Gaps = 54/289 (18%)
Query: 595 LQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVER--------VEGCD-DNIAV 645
QE IR + +A + RL+K E G + +
Sbjct: 263 EQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVL 322
Query: 646 EVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVK 705
E + +D G LK+++ I +GD AIVG G+GKS+LL + GE+ +SG VK
Sbjct: 323 EFENVSKGYDG--GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK 380
Query: 706 VCGTT---AYVAQTS--WIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQ 760
V G T Y Q + T+ E + G P E L + G+
Sbjct: 381 V-GETVKIGYFDQHRDELDPDKTVLEELSEGFP----DGDEQEVRAYLGR---FGFTGED 432
Query: 761 TEIGERGINLSGGQKQRIQLARAVYQDCDIYLLD------DVFS------AVDAHTGSDI 808
+ LSGG+K R+ LA+ + Q ++ LLD D+ S A+ G
Sbjct: 433 --QEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEG--- 487
Query: 809 FKECVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALL 856
T++LV+H FL V I ++ + + G Y L
Sbjct: 488 ------------TVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDYL 524
|
Length = 530 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 3e-16
Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 32/209 (15%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE--PS---GGRI 1326
+L + Y LK I L I + ++G +G GKSTL++ R+ + P G++
Sbjct: 6 NLNLFYGEKE--ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKV 63
Query: 1327 IIDGIDI--SLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYS------------DE 1372
+ DG DI + + +LR R G++ Q+P F ++ NI Y DE
Sbjct: 64 LFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNI----AYGPRLHGIKDKKELDE 119
Query: 1373 EIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEAT 1432
+ +SL++ L D V D+L DS S GQ+Q LC+ R + +L +DE T
Sbjct: 120 IVEESLKKAALWDEVK---DRLH----DSALGLSGGQQQRLCIARALAVEPEVLLLDEPT 172
Query: 1433 ASVDSQTDAEIQRIIREEFAACTIISIAH 1461
+++D +I+ +I+E TI+ + H
Sbjct: 173 SALDPIATGKIEELIQELKKKYTIVIVTH 201
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.0 bits (197), Expect = 3e-16
Identities = 64/209 (30%), Positives = 104/209 (49%), Gaps = 24/209 (11%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE--PSG-- 1323
+++ DL+V + VL G+ L I ++G +GSGKSTL++VF RL+E P
Sbjct: 4 IEIRDLKVSFGQVE--VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARV 61
Query: 1324 -GRIIIDGIDISLLGLHDLRSRFGIIPQEP------VLFE----GTVRSNIDPIGQYSDE 1372
G + +DG DI + + +LR R ++ Q P +FE G + + + E
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE 121
Query: 1373 EIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEAT 1432
+ +LE+ QL D V D+LD+ S GQ+Q LC+ R + +L DE T
Sbjct: 122 RVRWALEKAQLWDEVK---DRLDAPAG----KLSGGQQQRLCIARALAFQPEVLLADEPT 174
Query: 1433 ASVDSQTDAEIQRIIREEFAACTIISIAH 1461
A++D + A+I+ + E TI+ + H
Sbjct: 175 ANLDPENTAKIESLFLELKKDMTIVLVTH 203
|
Length = 250 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 3e-16
Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 14/214 (6%)
Query: 1272 DLQVRYR--SNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIID 1329
L R+R T + G++ ++ GE G++G G+GK+T +++ L+EP G +D
Sbjct: 6 ALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVD 65
Query: 1330 GIDISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVA 1388
G D+ + R R G + L++ T R N++ L+ +L +
Sbjct: 66 GFDVVKEPA-EARRRLGFVSDSTGLYDRLTARENLEYFAGL------YGLKGDELTARLE 118
Query: 1389 AKPDKLD--SLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRI 1446
D+L L+ +S G RQ + + R ++ +L +DE T +D ++
Sbjct: 119 ELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREF 178
Query: 1447 IREEFAA-CTIISIAHRIPTVMD-CDRVIVVDAG 1478
IR+ A I+ H + V CDRV+V+ G
Sbjct: 179 IRQLRALGKCILFSTHIMQEVERLCDRVVVLHRG 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 4e-16
Identities = 68/244 (27%), Positives = 110/244 (45%), Gaps = 63/244 (25%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT--------- 709
G+E LK+I+++ + G + IVG G+GKS+L+ I + G + + G
Sbjct: 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVID 74
Query: 710 ----TAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEY----GDQT 761
V Q + GT+++NI +G PM + EK++++ Y G
Sbjct: 75 LRRKIGMVFQQPHLFEGTVKDNIEYG-PMLKG-----------EKNVDVEYYLSIVGLNK 122
Query: 762 EIGERGI-NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGK 820
E R + NLSGG+ QR+ +AR + + ++ LLD+ SA+D T ++I +E + LK K
Sbjct: 123 EYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP-TSTEIIEELIVK-LKNK 180
Query: 821 ---TIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVE 877
T+I +TH ++ + G Y A LN G LVE
Sbjct: 181 MNLTVIWITHNMEQAKRI--------------GDYTAFLNKG--------------ILVE 212
Query: 878 VGKT 881
KT
Sbjct: 213 YAKT 216
|
Length = 241 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 4e-16
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 25/193 (12%)
Query: 1271 IDLQVRYR--SNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIII 1328
+L RY+ VLKG++LSI GE + +VG +GSGKSTL+ + L P+ G ++
Sbjct: 5 ENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLF 64
Query: 1329 DGIDISLLG---LHDLRSR-FGIIPQ-EPVLFEGTVRSNID-P--IGQYSDEEI----WK 1376
+G +S L LR++ G I Q +L + T N+ P IG+ S +E ++
Sbjct: 65 NGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYE 124
Query: 1377 SLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVD 1436
LE+ L+ + +P +L SG G+RQ + + R ++ L+ DE T ++D
Sbjct: 125 MLEKVGLEHRINHRPSEL------SG-----GERQRVAIARALVNQPSLVLADEPTGNLD 173
Query: 1437 SQTDAEIQRIIRE 1449
+ I ++ E
Sbjct: 174 NNNAKIIFDLMLE 186
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 4e-16
Identities = 60/229 (26%), Positives = 103/229 (44%), Gaps = 37/229 (16%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT--------AYVA 714
L++++L I G+L ++G G GK++LL I G + G +++ G V
Sbjct: 21 LEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVF 80
Query: 715 QTS----WIQNGTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERG 767
Q W+ + +N+ FGL + +A+ E+ LE +
Sbjct: 81 QNEALLPWL---NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE--GAEHK-----YI 130
Query: 768 INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGA-LKGKTIILVT 826
LSGG +QR+ +ARA+ + + LLD+ F A+DA T + + + GK ++L+T
Sbjct: 131 WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLIT 190
Query: 827 HQVD---FLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETS 872
H ++ FL ++L G +V+ R +DF AA E S
Sbjct: 191 HDIEEALFLATRLVVLSPGPGRVVE--RLP------LDFARRYAAGEPS 231
|
Length = 259 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 4e-16
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 25/215 (11%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
DL Y VL I+L + GE G +G G+GK+T +++ L++P G I DG
Sbjct: 5 DLTKTYGKKR--VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGK 62
Query: 1332 DISLLGLHDLRSRFGIIPQEPVLF-EGTVRSNIDPIGQY---SDEEIWKSLERCQLKDVV 1387
+ R G + + P + T R N+ + + + I + L+ LKD
Sbjct: 63 SYQ--KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKD-S 119
Query: 1388 AAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII 1447
A K K SL G +Q L + +L + LL +DE T +D E++ +I
Sbjct: 120 AKKKVKGFSL----------GMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELI 169
Query: 1448 REEFA-ACTI-IS--IAHRIPTVMDCDRVIVVDAG 1478
T+ IS + I V DR+ +++ G
Sbjct: 170 LSLRDQGITVLISSHLLSEIQKV--ADRIGIINKG 202
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 5e-16
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 23/200 (11%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
LK ++ + GE+IG++GR G+GKSTL+++ + P G + + G SLLGL
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLG---- 92
Query: 1344 RFGIIPQEPVLFEGTVRSNIDPIGQY---SDEEIWKSLERCQLKDVVAAKPDKLDSLVAD 1400
G P E T R NI G+ S +EI + ++ + D +D V
Sbjct: 93 -GGFNP------ELTGRENIYLNGRLLGLSRKEIDEKIDEII---EFSELGDFIDLPVK- 141
Query: 1401 SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIA 1460
+S G + L +L +DE A D+ + QR +RE + +
Sbjct: 142 ---TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILV 198
Query: 1461 -HRIPTVMD-CDRVIVVDAG 1478
H ++ CDR +V++ G
Sbjct: 199 SHDPSSIKRLCDRALVLEKG 218
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 5e-16
Identities = 49/255 (19%), Positives = 105/255 (41%), Gaps = 38/255 (14%)
Query: 625 SRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGS 684
E +R + +E+++ NG++ L +++ ++ G+ AIVG G+
Sbjct: 12 ELPEPKEPKKRHPIEINEPLIELKNVSVRR---NGKKILGDLSWQVNPGEHWAIVGPNGA 68
Query: 685 GKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ-------------------NGTIE 725
GK++LL+ + GE SG V + G + I T+
Sbjct: 69 GKTTLLSLLTGEHPPSSGDVTLLGRR--FGKGETIFELRKRIGLVSSELHERFRVRETVR 126
Query: 726 ENILFG----LPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGI-NLSGGQKQRIQL 780
+ +L G + + + L ++E + +R +LS G+++R+ +
Sbjct: 127 DVVLSGFFASIGIYQEDLTAED----LAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLI 182
Query: 781 ARAVYQDCDIYLLDDVFSAVDA---HTGSDIFKECVRGALKGKTIILVTHQV-DFLHNVD 836
ARA+ +D ++ +LD+ +D + +E + + ++ VTH +
Sbjct: 183 ARALVKDPELLILDEPAQGLDLIAREQLLNRLEE-LAASPGAPALLFVTHHAEEIPPCFT 241
Query: 837 LILVMREGMIVQSGR 851
L+++EG +V G+
Sbjct: 242 HRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 77.5 bits (192), Expect = 5e-16
Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 21/186 (11%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTS-WIQN 721
+++++ E++ G++ I G VG+G++ L ++ G SG++ + G I+
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 722 GTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLA 781
G + +P +R + G L+ + + + LSGG +Q++ LA
Sbjct: 76 G------IAYVPEDRKREG-----LVLDLSVA-----ENIALSSL---LSGGNQQKVVLA 116
Query: 782 RAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVD-FLHNVDLILV 840
R + +D + +LD+ VD ++I++ A GK ++L++ ++D L D ILV
Sbjct: 117 RWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILV 176
Query: 841 MREGMI 846
M EG I
Sbjct: 177 MYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 5e-16
Identities = 60/218 (27%), Positives = 93/218 (42%), Gaps = 44/218 (20%)
Query: 667 NLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-----TTAYVAQTSWI-- 719
+L + G++ AI+G G+GKS+LL I G SG++ + G + S +
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 720 QNG-----TIEENILFGL-------PMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERG 767
+N T+ +NI GL R K L L+ + GE
Sbjct: 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-------GE-- 129
Query: 768 INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDA-------HTGSDIFKECVRGALKGK 820
LSGGQ+QR+ LAR + ++ I LLD+ FSA+D S + E +
Sbjct: 130 --LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE------RKM 181
Query: 821 TIILVTHQV-DFLHNVDLILVMREGMIVQSGRYNALLN 857
T+++VTH D D ++ + G I G LL+
Sbjct: 182 TLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219
|
Length = 231 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 6e-16
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 51/227 (22%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------------ 710
L+ ++LE+++G++ A++G G+GK++LL +I+G + SG++ G
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78
Query: 711 --AYVAQTSWI-QNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEM----MEYGDQTEI 763
AYV + I T+EEN+L G R K + LE+ E+ E +Q
Sbjct: 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERD---LEEVYELFPRLKERRNQ--- 132
Query: 764 GERGINLSGGQKQRIQLARAVYQDCDIYLLD------------DVFSAVDAHTGSDIFKE 811
R LSGG++Q + +ARA+ + LLD ++F A+ ++ KE
Sbjct: 133 --RAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI-----KELRKE 185
Query: 812 CVRGALKGKTIILVTHQVDF-LHNVDLILVMREGMIVQSGRYNALLN 857
G TI+LV F L D V+ G IV SG LL
Sbjct: 186 ------GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 7e-16
Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 35/231 (15%)
Query: 1267 NVDLIDLQVRYRSNTPLVLKG---ITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSG 1323
NVD I Y TP+ KG I+ + G + +VG TGSGKSTL+Q F L++PS
Sbjct: 7 NVDYI-----YSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61
Query: 1324 GRIIIDGIDISL----LGLHDLRSRFGIIPQ--EPVLFEGTVRSNID--PIG-----QYS 1370
G I I G I+ L LR + ++ Q E LFE TV +++ P +
Sbjct: 62 GTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEA 121
Query: 1371 DEEIWKSLERCQLKDVVAAK-PDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMD 1429
E+ K L++ L + + +K P +L S GQ + + + VM +L +D
Sbjct: 122 KEKALKWLKKVGLSEDLISKSPFEL-----------SGGQMRRVAIAGVMAYEPEILCLD 170
Query: 1430 EATASVDSQTDAEIQRIIRE-EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
E A +D + E+ ++ ++ + A T+I + H + V + D V+V++ G
Sbjct: 171 EPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 82.3 bits (203), Expect = 8e-16
Identities = 107/525 (20%), Positives = 191/525 (36%), Gaps = 50/525 (9%)
Query: 980 HSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFD 1039
H +F + +G +L+++ + F + G+ + IL AP+ D
Sbjct: 46 HEENFLGQGSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEID 105
Query: 1040 TTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWP----TIFLVIP 1095
+ ++ + D I+ FL F I +A+ I I + + P TI +I
Sbjct: 106 RRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLA-YLSVPMFAITISAIII 164
Query: 1096 LAWANYWYR-GYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFY----- 1149
A G + D+ + H G ++ G + +
Sbjct: 165 GTAAQLLAFMGGFKFFHAARDEEDAFNE-----HTHAIAFGAKELKIHGIRRLSFAHGAI 219
Query: 1150 QENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPS--SIIKPENVGL 1207
QE+ N + D H ++ E G F L + + + I +
Sbjct: 220 QESANNIA-----DLHIIEILIFIA--AENFGQLLFFLLIGCALFAAAMFASIDAAAISA 272
Query: 1208 SLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEI-----PSEAAWKMEDRLPPPNW 1262
+ L + G L + + ++ +R+ F E P ++ L +
Sbjct: 273 FVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHD 332
Query: 1263 PAHGNVDLIDLQVRYR---SNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLV 1319
+ +++L D+ + + + L I L I G+ + +VG G GKSTL ++F L
Sbjct: 333 KSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY 392
Query: 1320 EPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLE 1379
P G I++DG +S D R F I + LF+ + D S + + L+
Sbjct: 393 IPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGP--DEGEHASLDNAQQYLQ 450
Query: 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
R ++ D V K++ + S GQ++ L L L+ +L DE A
Sbjct: 451 RLEIADKV-----KIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAAD----Q 501
Query: 1440 DAEIQRIIREEF------AACTIISIAHRIPTVMDCDRVIVVDAG 1478
D +R EE TII I+H D++I + AG
Sbjct: 502 DPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAG 546
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 9e-16
Identities = 54/237 (22%), Positives = 106/237 (44%), Gaps = 53/237 (22%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILG----EMHKISGKVKVCGT--------- 709
+++++ E++ G++ IVG GSGKS+L +++G SG+V + G
Sbjct: 25 VRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84
Query: 710 --------TAYVAQ---TSW-----IQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLE 753
A + Q TS I + I E + +RA+ ++ +E
Sbjct: 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGD-QIREALRLHGKGSRAE--------ARKRAVE 135
Query: 754 MMEYGDQTEIGERGIN------LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSD 807
++E Q + + LSGG +QR+ +A A+ + + D+ +A+D T +
Sbjct: 136 LLE---QVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQ 192
Query: 808 I---FKECVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLNSGM 860
I K+ R G ++ +TH + + + D ++VM +G IV++G +L++
Sbjct: 193 ILDLLKDLQRE--LGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQ 247
|
Length = 539 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 9e-16
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 19/208 (9%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLL---GLHD 1340
VL ++LSI GE +G++GR+G GKSTL ++ L +P+ G + G D+ L
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 1341 LRSRFGIIPQE---PVLFEGTVRSNI-DPIGQYSDEEIWKSLERCQ-LKDVVAAKPDKLD 1395
R ++ Q+ V TVR I +P+ + + + R L D+V + + D
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDAD 145
Query: 1396 SLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE---EFA 1452
L S GQ Q + + R + +L+ +DEA +++D A I ++R+ F
Sbjct: 146 KLPRQ----LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFG 201
Query: 1453 -ACTIISIAHRIPTVMD-CDRVIVVDAG 1478
A I+ H + V C RV V+D G
Sbjct: 202 TAYLFIT--HDLRLVQSFCQRVAVMDKG 227
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 1e-15
Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 20/206 (9%)
Query: 1279 SNTPL----VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDIS 1334
SN L VLK I L I GE + + G TGSGK++L+ + +EPS G+I G
Sbjct: 43 SNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG---- 98
Query: 1335 LLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKS-LERCQLKDVVAAKPDK 1393
R Q + GT++ NI G DE +KS ++ CQL++ + P+K
Sbjct: 99 ---------RISFSSQFSWIMPGTIKENI-IFGVSYDEYRYKSVVKACQLEEDITKFPEK 148
Query: 1394 LDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIREEFA 1452
++++ + G S GQR + L R + K + L +D +D T+ EI + + + A
Sbjct: 149 DNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMA 208
Query: 1453 ACTIISIAHRIPTVMDCDRVIVVDAG 1478
T I + ++ + D+++++ G
Sbjct: 209 NKTRILVTSKMEHLKKADKILILHEG 234
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.5 bits (192), Expect = 1e-15
Identities = 60/219 (27%), Positives = 108/219 (49%), Gaps = 25/219 (11%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
+L Y L+G++L + GE + ++GR G+GK+TL++ LV P GRII DG
Sbjct: 8 NLSAGYGKIQ--ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGE 65
Query: 1332 DISLLGLHDLRSRFGI--IPQEPVLF-EGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVA 1388
DI+ L H+ R+R GI +P+ +F TV N+ +G Y+ + K + L++V
Sbjct: 66 DITGLPPHE-RARLGIAYVPEGRRIFPRLTVEENLL-LGAYARRD--KEAQERDLEEVYE 121
Query: 1389 AKP---DKLDSLVAD-SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATA----SVDSQTD 1440
P ++ + SG G++Q+L + R ++ +LL +DE + + +
Sbjct: 122 LFPRLKERRNQRAGTLSG-----GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF 176
Query: 1441 AEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
I+ + +E TI+ + ++ DR V++ G
Sbjct: 177 EAIKELRKEGGM--TILLVEQNARFALEIADRGYVLENG 213
|
Length = 237 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 24/220 (10%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+ L +L RY L G++L++ G G++G G+GK+TL+++ L PS G I
Sbjct: 1 LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNIDPIG-------QYSDEEIWKSLE 1379
IDG D+ LR R G +PQE ++ TVR +D I + + + LE
Sbjct: 58 IDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLE 116
Query: 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
L D K L SG G R+ + + + ++ +L +DE TA +D +
Sbjct: 117 LVNLGDRAKKKIGSL------SG-----GMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165
Query: 1440 DAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
+ ++ E +I H + V C++V V++ G
Sbjct: 166 RIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 1e-15
Identities = 65/208 (31%), Positives = 104/208 (50%), Gaps = 25/208 (12%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL--- 1341
L ++L + G+ GV+G +G+GKSTLI+ L P+ G +I+DG D++ L +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 1342 RSRFGIIPQE-PVLFEGTVRSNID-PIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLV- 1398
R + G+I Q +L TV N+ P+ L+ KD + K +L +LV
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPL----------ELDN-TPKDEIKRKVTELLALVG 129
Query: 1399 -ADSGD----NWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE--EF 1451
D D N S GQ+Q + + R + + ++L DEAT+++D T I +++E
Sbjct: 130 LGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRR 189
Query: 1452 AACTIISIAHRIPTVMD-CDRVIVVDAG 1478
TI+ I H + V CD V V+ G
Sbjct: 190 LGLTILLITHEMDVVKRICDCVAVISNG 217
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 1e-15
Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 46/199 (23%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSR 1344
+ G++ SI GE +G+VG +G GKSTL ++ L EP+ G I+ +G DI+ L + R
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERR-- 86
Query: 1345 FGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAK-PDKLDSLVADSGD 1403
E + + LE+ L + + P +L SG
Sbjct: 87 ---------------------------ERVLELLEKVGLPEEFLYRYPHEL------SG- 112
Query: 1404 NWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRI---IREEFAACTIISIA 1460
GQRQ + + R + + +L+ DE +++D A+I + ++EE T + I+
Sbjct: 113 ----GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL-GLTYLFIS 167
Query: 1461 HRIPTV-MDCDRVIVVDAG 1478
H + V DR+ V+ G
Sbjct: 168 HDLSVVRYISDRIAVMYLG 186
|
Length = 268 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 1e-15
Identities = 57/218 (26%), Positives = 91/218 (41%), Gaps = 43/218 (19%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLL---GLHD 1340
+LKG+ L + GE + +VG +GSGKSTL+ V L +PS G + + G + L
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 1341 LRSR--------FGIIP--------QEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLK 1384
LR+R F +IP P+ G ++ + LE L
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAK-------ALLEAVGLG 137
Query: 1385 DVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 1444
+ P +L SG G++Q + L R +LF DE T ++D T +I
Sbjct: 138 KRLTHYPAQL------SG-----GEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIA 186
Query: 1445 RII----REEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
++ RE T++ + H CDR + + +G
Sbjct: 187 DLLFALNRE--RGTTLVLVTHDPQLAARCDRQLRLRSG 222
|
Length = 228 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 1e-15
Identities = 53/206 (25%), Positives = 100/206 (48%), Gaps = 42/206 (20%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEM-HKI-SGKVKVCGTTAYVAQ 715
G+E LK +NL IKKG++ A++G GSGKS+L +I+G +++ G++ G
Sbjct: 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG------- 63
Query: 716 TSWIQNGTIEENILFGLPMN-RAKYG------EVVRVCCLEKDLEMMEYGDQTEIGERGI 768
E+I LP RA+ G + ++ ++ R +
Sbjct: 64 ----------EDITD-LPPEERARLGIFLAFQYPPEI----PGVKNADF-------LRYV 101
Query: 769 N--LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVT 826
N SGG+K+R ++ + + + D+ +LD+ S +D + + + +GK+++++T
Sbjct: 102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIIT 161
Query: 827 HQVDFLHNV--DLILVMREGMIVQSG 850
H L + D + V+ +G IV+SG
Sbjct: 162 HYQRLLDYIKPDRVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 1e-15
Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 31/232 (13%)
Query: 641 DNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSS---LLASILGEM 697
DNI VE + F++ D + L +I+ I +G TA++G GSGKS+ L+ +L
Sbjct: 3 DNI-VEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPD 60
Query: 698 HKISGKVKVCGTTAYVAQTSW---------IQN-------GTIEENILFGLPMNRAKYGE 741
+ K+ V G T A+T W QN T+ +++ FGL E
Sbjct: 61 DNPNSKITVDGIT-LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPE 119
Query: 742 VVR-VCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAV 800
+++ V + D+ M++Y D NLSGGQKQR+ +A + + I +LD+ S +
Sbjct: 120 MIKIVRDVLADVGMLDYIDSEP-----ANLSGGQKQRVAIAGILAVEPKIIILDESTSML 174
Query: 801 DAHTGSDIFKECVRGALKGK--TIILVTHQVDFLHNVDLILVMREGMIVQSG 850
D I K +R K T+I +TH +D + D +LV+ +G ++ G
Sbjct: 175 DPAGKEQILK-LIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQG 225
|
Length = 282 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 2e-15
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 36/193 (18%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASI-----LGEMHKISGKVKVCGTTAYVAQTS 717
LK INL+I++ +TA++G G GKS+ L ++ L KI G+V + G Y +
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 718 WIQ------------NG---TIEENILFGLPM----NRAKYGEVVRVCCLEKDLEMMEYG 758
Q N +I +N+ +G ++ K E+V EK L+
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIV-----EKSLKGAALW 133
Query: 759 DQTEIGER----GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR 814
D E+ +R + LSGGQ+QR+ +ARA+ + ++ L+D+ SA+D + I +E ++
Sbjct: 134 D--EVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKI-EELIQ 190
Query: 815 GALKGKTIILVTH 827
K TI++VTH
Sbjct: 191 ELKKDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 3e-15
Identities = 71/244 (29%), Positives = 109/244 (44%), Gaps = 52/244 (21%)
Query: 641 DNIAVEVRDGVFSW-DDENGEE--CLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEM 697
N ++ ++ + + +E E L ++NLE+KKG+ I+G GSGKS++ + +
Sbjct: 1 MNEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL 60
Query: 698 HKISGKVKVCGTTAYVAQTSW---------IQN------GTI-EENILFGLPMNRAKYGE 741
GKV V G + W QN TI EE++ FG P N E
Sbjct: 61 IPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFG-PENLGIPPE 119
Query: 742 VVRV---CCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLA--RAVYQDCDIY----- 791
+R L+K + M EY LSGGQKQR+ +A A+ +C I+
Sbjct: 120 EIRERVDESLKK-VGMYEYRRHAP-----HLLSGGQKQRVAIAGILAMRPECIIFDEPTA 173
Query: 792 LLD-----DVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMI 846
+LD +V + T ++ K+ G TIIL+TH ++ D I+VM G +
Sbjct: 174 MLDPSGRREVVN-----TIKELNKK------YGITIILITHYMEEAVEADRIIVMDSGKV 222
Query: 847 VQSG 850
V G
Sbjct: 223 VMEG 226
|
Length = 280 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 3e-15
Identities = 71/236 (30%), Positives = 108/236 (45%), Gaps = 41/236 (17%)
Query: 665 NINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYV----------- 713
N +L+I++G++ ++G GSGKS+LL ++ G G V V V
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 714 --------------AQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGD 759
A W T+EEN+ FGL M + R +++ LE++
Sbjct: 102 RLRTHRVSMVFQQFALLPWR---TVEENVAFGLEM--QGMPKAERRKRVDEQLELVGLAQ 156
Query: 760 --QTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR--G 815
+ GE LSGG +QR+ LARA + I L+D+ FSA+D + + E +
Sbjct: 157 WADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQS 212
Query: 816 ALKGKTIILVTHQVD-FLHNVDLILVMREGMIVQSGR-YNALLNSGMDFGALVAAH 869
LK KTI+ V+H +D L + I +M G I+Q G +LN D+ A AH
Sbjct: 213 KLK-KTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFVAH 267
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 3e-15
Identities = 61/189 (32%), Positives = 87/189 (46%), Gaps = 22/189 (11%)
Query: 678 IVGTVGSGKSSLLASILGEMHKISGKVKVCGT--TAYVAQTSWI----QN------GTIE 725
++G G GK++LL + G SG + + G T I Q+ T+E
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 726 ENILFGLPMNRAKYGEVV-RVCCLEKDLEMMEYGDQTEIGERG-INLSGGQKQRIQLARA 783
EN+ FGL M + E+ RV LE + E +R LSGGQ+QR+ LARA
Sbjct: 61 ENVAFGLKMRKVPRAEIKPRV------LEALRLVQLEEFADRKPHQLSGGQQQRVALARA 114
Query: 784 VYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTH-QVDFLHNVDLILVM 841
+ I LLD+ SA+D + E + G T + VTH Q + + D I +M
Sbjct: 115 LVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIM 174
Query: 842 REGMIVQSG 850
R+G I Q G
Sbjct: 175 RKGKIAQIG 183
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 3e-15
Identities = 54/221 (24%), Positives = 104/221 (47%), Gaps = 27/221 (12%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+++ ++ R+ T L I+ S+ GE G++G G+GK+T I++ ++ P G ++
Sbjct: 1 LEVENVTKRFGRVT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNIDPIGQ---YSDEEIWKS----LE 1379
DG + + R+R G +P+E L+ V + + Q EE + LE
Sbjct: 59 FDGKPLDIAA----RNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLE 114
Query: 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
R +L + + ++L S G +Q + ++ LL +DE + +D
Sbjct: 115 RLELSEYANKRVEEL-----------SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN 163
Query: 1440 DAEIQRIIREEFAA-CTIISIAHRIPTVMD-CDRVIVVDAG 1478
++ +IRE A T+I H++ V + CDRV++++ G
Sbjct: 164 VELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 75.5 bits (187), Expect = 4e-15
Identities = 58/220 (26%), Positives = 95/220 (43%), Gaps = 39/220 (17%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------- 709
L ++L + +G++ A++G G+GK++LL +I+G + SG ++ G
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARA 75
Query: 710 -TAYVAQTSWI-QNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGER- 766
YV + I T+EEN+L G A+ + LE + Y + ER
Sbjct: 76 GIGYVPEGRRIFPELTVEENLLLGA---YARRRAKRK-----ARLERV-YELFPRLKERR 126
Query: 767 ---GINLSGGQKQRIQLARAVYQDCDIYLLDDVF-----SAVDAHTGSDIFKECVRGALK 818
LSGG++Q + +ARA+ + LLD+ V+ +IF+ +
Sbjct: 127 KQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE-----EIFEAIRELRDE 181
Query: 819 GKTIILVTHQVDF-LHNVDLILVMREGMIVQSGRYNALLN 857
G TI+LV F L D V+ G +V G LL
Sbjct: 182 GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (189), Expect = 4e-15
Identities = 74/262 (28%), Positives = 123/262 (46%), Gaps = 41/262 (15%)
Query: 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKIS 701
N +EV + VF ++ E+ L ++ I KG+ +I+G GSGKS+ I G +
Sbjct: 2 NKILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE 61
Query: 702 GKVKVCGTTAYVAQTSW---------IQN-------GTIEENILFGLPMNRAKYGEVV-R 744
GKVK+ G A+ W QN T+E+++ FG+ E++ R
Sbjct: 62 GKVKIDGEL-LTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR 120
Query: 745 VCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHT 804
V + M+++ +T R LSGGQKQR+ +A + +I +LD+ S +D
Sbjct: 121 VDEALLAVNMLDF--KTREPAR---LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTG 175
Query: 805 GSDIFKECVRGALKGK---TIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMD 861
+I + V +K K T++ +TH +D + D ILVM+ G I++ + L
Sbjct: 176 RQEIMR--VIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF----- 228
Query: 862 FGALVAAHETSMELVEVGKTMP 883
TS ++VE+G +P
Sbjct: 229 --------ATSEDMVEIGLDVP 242
|
Length = 277 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 5e-15
Identities = 63/230 (27%), Positives = 109/230 (47%), Gaps = 37/230 (16%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+D+ DL V + T VL G+ LS+ G +G+VG G+GK+TL++ + P+ G ++
Sbjct: 4 IDVSDLSVEFGDTT--VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL 61
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVL-FEGTVR-----------SNIDPIGQYSDEEIW 1375
+ G D+ L R +PQ+ L FE VR S D + +
Sbjct: 62 VAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVE 121
Query: 1376 KSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASV 1435
+++ER + A +P + SL SG G+RQ + L R + + + +L +DE TAS+
Sbjct: 122 RAMERTGV-AQFADRP--VTSL---SG-----GERQRVLLARALAQATPVLLLDEPTASL 170
Query: 1436 D----SQTDAEIQRIIREEFAACTII---SIAHRIPTVMDCDRVIVVDAG 1478
D +T ++R++ + A I +A R CD ++++ G
Sbjct: 171 DINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARY-----CDELVLLADG 215
|
Length = 402 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 9e-15
Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 24/208 (11%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL--- 1341
+ L+I GE ++G +GSGKST +++ RL+EP+ G+I IDG +I +L
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 1342 -RSRFGIIPQEPVLF-EGTVRSNID--PIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSL 1397
R + G++ Q+ LF T+ N P E+ K LK V L+
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLV------GLEEY 122
Query: 1398 VADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAAC--- 1454
D S G +Q + L R + +L MDEA +++D +Q +E
Sbjct: 123 EHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQ----DELKKLQAT 178
Query: 1455 ---TIISIAHRIPTVMDC-DRVIVVDAG 1478
TI+ I H + + DR++++ AG
Sbjct: 179 LQKTIVFITHDLDEAIRIGDRIVIMKAG 206
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 46/219 (21%)
Query: 640 DDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH- 698
A+EVRD + D+ LK+INL+I K +TA++G G GKS+LL L M+
Sbjct: 3 MKIPAIEVRDLNLYYGDK---HALKDINLDIPKNKVTALIGPSGCGKSTLLRC-LNRMND 58
Query: 699 -----KISGKVKVCGTTAYVAQTSWIQN-------------------GTIEENILFGLPM 734
++ G+V + G Y + +I +N+ +GL +
Sbjct: 59 LIPGARVEGEVLLDGKNIY----DPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRL 114
Query: 735 NRAKYGEVVRVCCLEKDLEMMEYGDQTE--IGERGINLSGGQKQRIQLARAVYQDCDIYL 792
+ K E+ + +E L+ D+ + + + + LSGGQ+QR+ +ARA+ ++ L
Sbjct: 115 HGIKDKELDEI--VESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLL 172
Query: 793 LDDVFSAVD---AHTGSDIFKECVRGALKGK-TIILVTH 827
+D+ SA+D ++ E LK K TI++VTH
Sbjct: 173 MDEPTSALDPISTLKIEELITE-----LKKKYTIVIVTH 206
|
Length = 253 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 1e-14
Identities = 71/268 (26%), Positives = 119/268 (44%), Gaps = 39/268 (14%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
+ V F + D LK+++ + +G+ AIVG GSGKS+L + G + +G +
Sbjct: 6 IRVEHISFRYPD-AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 705 KVCGTTAYVAQTSW---------IQN-------GTIEENILFGLPMNRAKYGEVV-RVCC 747
V G +T W QN T+++++ FGL E+V RV
Sbjct: 65 TVGGMV-LSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQ 123
Query: 748 LEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSD 807
+ + M ++ ++ LSGGQKQR+ +A + DI +LD+ S +D G
Sbjct: 124 ALRQVGMEDFLNREP-----HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP-RGRR 177
Query: 808 IFKECVRGALK---GKTIILVTHQVDFLHNVDLILVMREGMIVQSG------RYN-ALLN 857
E VR LK G T++ +TH +D D ++VM +G I++ G + L
Sbjct: 178 EVLETVR-QLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGHMLQE 236
Query: 858 SGMDFGALVAAHETSMELVEVGKTMPSG 885
G+D + + + L G +P+
Sbjct: 237 IGLD---VPFSVKLKELLKRNGILLPNT 261
|
Length = 279 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 1e-14
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 24/195 (12%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE--PSG---GRIIIDGIDISLLGLH 1339
LKGI++ I + +G +G GKST +++F R+ + P+ G I IDG +I G+
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 1340 --DLRSRFGIIPQEPVLFEGTVRSNID--------PIGQYSDEEIWKSLERCQLKDVVAA 1389
+LR G++ Q P F ++ N+ + + + ++L+ L D V
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK- 137
Query: 1390 KPDKL-DSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR 1448
DKL +S A SG GQ+Q LC+ R M +L MDE +++D + A+++ +I
Sbjct: 138 --DKLKESAFALSG-----GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIH 190
Query: 1449 EEFAACTIISIAHRI 1463
E TI+ + H +
Sbjct: 191 ELKKDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 1e-14
Identities = 57/202 (28%), Positives = 103/202 (50%), Gaps = 13/202 (6%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
V++ ++L+++ GE +G++G G+GK+T + +V G IIID DISLL LH R+
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA-RA 76
Query: 1344 RFGI--IPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDK--LDSLV 1398
R GI +PQE +F +V N+ + +I L Q +D ++ ++ L
Sbjct: 77 RRGIGYLPQEASIFRRLSVYDNLMAV-----LQIRDDLSAEQREDRANELMEEFHIEHLR 131
Query: 1399 ADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE-EFAACTII 1457
G + S G+R+ + + R + + + + +DE A VD + +I+RII + ++
Sbjct: 132 DSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVL 191
Query: 1458 SIAHRIPTVMD-CDRVIVVDAG 1478
H + + C+R +V G
Sbjct: 192 ITDHNVRETLAVCERAYIVSQG 213
|
Length = 241 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 1e-14
Identities = 68/247 (27%), Positives = 117/247 (47%), Gaps = 34/247 (13%)
Query: 641 DNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI 700
NI +EV++ F + ++ + L +++ +K+G+ +I+G GSGKS+ + I G +
Sbjct: 2 SNI-IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE 60
Query: 701 SGKVKVCGTTAYVAQTSW---------IQN-------GTIEENILFGLPMNRAKYGEVVR 744
SG++ + G + W QN T+E+++ FGL + E+
Sbjct: 61 SGQIIIDG-DLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMK- 118
Query: 745 VCCLEKDLEMMEYGDQTEIGERG-INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAH 803
E+ E +E + ER LSGGQKQR+ +A AV I +LD+ S +D
Sbjct: 119 ----ERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPE 174
Query: 804 TGSDIFKECVRGALK--GKTIILVTHQVDFLHNVDLILVMREGMIVQS-------GRYNA 854
++ K ++G T+I +TH +D + D +LVM+ G + + R N
Sbjct: 175 GRLELIK-TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGND 233
Query: 855 LLNSGMD 861
LL G+D
Sbjct: 234 LLQLGLD 240
|
Length = 279 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 1e-14
Identities = 73/319 (22%), Positives = 135/319 (42%), Gaps = 41/319 (12%)
Query: 551 ISGNIIVMWSTPVLIST--LTFATALLFGVP-LDAGSVFTTTTIFKILQEPIRNFPQSMI 607
+ V WS +L+ L F AL G + + +F L+ P+ + +
Sbjct: 230 TFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLF--LRTPLLSAVGILP 287
Query: 608 SLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNIN 667
+L A ++ ++ K L+ R + D +E+R+ F++ D + IN
Sbjct: 288 TLLTAQVAFNKIAKLELAPYK--ADFPRPQAFPDWKTLELRNVRFAYQDNAFH--VGPIN 343
Query: 668 LEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEE- 726
L IK+G+L ++G GSGKS+L + G SG++ + G + +E+
Sbjct: 344 LTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP--------VSAEQLEDY 395
Query: 727 NILFGL-------------PMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGI---NL 770
LF P +A + EK L+ +E +T + + L
Sbjct: 396 RKLFSAVFSDYHLFDQLLGPEGKASPQLI------EKWLQRLELAHKTSLNDGRFSNLKL 449
Query: 771 SGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECV-RGALKGKTIILVTHQV 829
S GQK+R+ L A+ ++ DI +LD+ + D + ++ + +GKTI ++H
Sbjct: 450 STGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD 509
Query: 830 DFLHNVDLILVMREGMIVQ 848
+ + D +L MR G + +
Sbjct: 510 HYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (184), Expect = 1e-14
Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 18/195 (9%)
Query: 1280 NTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIID------GIDI 1333
N +LK IT+ I G++G +GSGKSTL++V RL+E +I +D G DI
Sbjct: 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDI 80
Query: 1334 SLLGLHDLRSRFGIIPQEPVLFEG-TVRSNID-PI---GQYSDEEIWKSLERCQLKDVVA 1388
+ LR G++ Q+P F ++ NI P+ G EI K +E C L+ V
Sbjct: 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEEC-LRKVGL 139
Query: 1389 AKP--DKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRI 1446
K D+L+S S GQ+Q L + R + ++L MDE T+ +D I+++
Sbjct: 140 WKEVYDRLNS----PASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKL 195
Query: 1447 IREEFAACTIISIAH 1461
I E I+ ++H
Sbjct: 196 ITELKNEIAIVIVSH 210
|
Length = 257 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 1e-14
Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 24/208 (11%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL-- 1341
VLKGI+L I+ GE + +VG +GSGKSTL+ + L +P+ G + G D++ L L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 1342 --RSRFGIIPQE-PVLFEGTVRSNIDPIGQYSDEEIWKSLERCQ-------LKDVVAAKP 1391
R FG I Q +L T N++ Y+ E + L R Q L+D V +P
Sbjct: 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP 142
Query: 1392 DKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE-E 1450
+L S GQ+Q + + R ++ +++ DE T ++DS + E+ I+ +
Sbjct: 143 SQL-----------SGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLR 191
Query: 1451 FAACTIISIAHRIPTVMDCDRVIVVDAG 1478
T+I + H +RVI + G
Sbjct: 192 DRGHTVIIVTHDPQVAAQAERVIEIRDG 219
|
Length = 648 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 1e-14
Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 25/205 (12%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI-SGKVKVCGTTAYVA------- 714
L +INLEI G++ + G GSGK++LL +++G + + G +KV G Y A
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLL-TLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 715 ---QTSWIQNG-------TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIG 764
+I T +N+ L + LE + GD +
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQP-NLSYQEARERARAMLEAVGLGDH--LD 136
Query: 765 ERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK--GKTI 822
NLSGGQKQR+ +ARA+ + L D+ +A+D+ +G D+ E ++ + G TI
Sbjct: 137 YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVV-ELMQKLAREQGCTI 195
Query: 823 ILVTHQVDFLHNVDLILVMREGMIV 847
++VTH L D I+ M +G ++
Sbjct: 196 LIVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 2e-14
Identities = 42/190 (22%), Positives = 86/190 (45%), Gaps = 49/190 (25%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNG 722
L ++L +++G++ A++G G+GKS+L+ + G SG++ V G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG-------------- 61
Query: 723 TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGIN----LSGGQKQRI 778
+ + F P A+ GI LS G++Q +
Sbjct: 62 ---KEVSFASP-RDAR--------------------------RAGIAMVYQLSVGERQMV 91
Query: 779 QLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNV-DL 837
++ARA+ ++ + +LD+ +A+ +FK R +G +I ++H++D + + D
Sbjct: 92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADR 151
Query: 838 ILVMREGMIV 847
+ V+R+G +V
Sbjct: 152 VTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 2e-14
Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 31/208 (14%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK-ISGKVKVCG---TTAYVAQTSW 718
LK ++L I KG++ AIVG+ GSGKS+LL +LG + SG+V G + + +
Sbjct: 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLL-HLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 719 IQNG---------------TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMME-YGDQTE 762
++N T EN+ L + + E E+ EM+E G +
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAK-----ERAYEMLEKVGLEHR 134
Query: 763 IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIF---KECVRGALKG 819
I R LSGG++QR+ +ARA+ + L D+ +D + IF E R
Sbjct: 135 INHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR--ELN 192
Query: 820 KTIILVTHQVDFLHNVDLILVMREGMIV 847
+ ++VTH ++ +D +L M++G +
Sbjct: 193 TSFLVVTHDLELAKKLDRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 2e-14
Identities = 51/211 (24%), Positives = 84/211 (39%), Gaps = 55/211 (26%)
Query: 1281 TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD 1340
++ ++ + GE +G+ G G+G++ L + F L P+ G I +DG ++ D
Sbjct: 12 VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRD 71
Query: 1341 L-----------RSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAA 1389
R R G++ V NI +L L
Sbjct: 72 AIRAGIAYVPEDRKREGLVLDLS------VAENI-------------AL-SSLL------ 105
Query: 1390 KPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 1449
SG N Q Q + L R + + R+L +DE T VD AEI R+IRE
Sbjct: 106 -----------SGGN----Q-QKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRE 149
Query: 1450 EFAA-CTIISIAHRIPTVMD-CDRVIVVDAG 1478
A ++ I+ + ++ CDR++V+ G
Sbjct: 150 LADAGKAVLLISSELDELLGLCDRILVMYEG 180
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 2e-14
Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 34/206 (16%)
Query: 667 NLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKV-----CGTTAYVAQTSWI-- 719
+L + G++ AI+G G+GKS+LL I G + SG +KV G Y S +
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 720 QNG-----TIEENILFG----LPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGIN- 769
+N T+ +NI G L +N + +VV + D + R
Sbjct: 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQ------QVGIADYLD---RLPEQ 128
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIF----KECVRGALKGKTIILV 825
LSGGQ+QR+ LAR + + I LLD+ FSA+D ++ + C + +T+++V
Sbjct: 129 LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE---RQRTLLMV 185
Query: 826 THQV-DFLHNVDLILVMREGMIVQSG 850
TH + D I V+ +G I
Sbjct: 186 THHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 2e-14
Identities = 47/201 (23%), Positives = 86/201 (42%), Gaps = 42/201 (20%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVF--FRLVEPSGGRIIIDGIDISLLGLHDL 1341
+LK ++ GE ++G +G+GKSTL+ R G ++I+G +
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD---KRSF 80
Query: 1342 RSRFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVAD 1400
R G +PQ+ +L TVR + AA KL L
Sbjct: 81 RKIIGYVPQDDILHPTLTVRETLM----------------------FAA---KLRGL--- 112
Query: 1401 SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREE-FAACTIISI 1459
SG G+R+ + + ++ + LLF+DE T+ +DS + ++ ++R TII
Sbjct: 113 SG-----GERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICS 167
Query: 1460 AHRIPTVM--DCDRVIVVDAG 1478
H+ + + D+++++ G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQG 188
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-14
Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 24/192 (12%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASI--LGEMH---KISGKVKVCGTTAY 712
N ++ L +++L+ ++TA++G GSGKS+LL SI + +++ I+G + G Y
Sbjct: 16 NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIY 75
Query: 713 VAQTSWIQ---------------NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEY 757
+T + +I EN+++GL + K +V+ +EK L+
Sbjct: 76 SPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEA-VEKSLKGASI 134
Query: 758 GDQTE--IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRG 815
D+ + + + + LSGGQ+QR+ +AR + I LLD+ SA+D + I +E + G
Sbjct: 135 WDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI-EETLLG 193
Query: 816 ALKGKTIILVTH 827
T++LVT
Sbjct: 194 LKDDYTMLLVTR 205
|
Length = 252 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 3e-14
Identities = 60/220 (27%), Positives = 108/220 (49%), Gaps = 22/220 (10%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
V+L ++ R+ + T L + L I GE + ++G +G GK+T +++ L EP+ GRI
Sbjct: 1 VELENVTKRFGNVT--ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLF-EGTVRSNID---PIGQYSDEEIWKSLERCQL 1383
I G D++ L D R ++ Q L+ TV NI + + +EI + +
Sbjct: 59 IGGRDVTDLPPKD-RD-IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVRE--- 113
Query: 1384 KDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS----QT 1439
A+ +++ L+ S GQRQ + LGR +++ ++ MDE +++D+ Q
Sbjct: 114 ----VAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQM 169
Query: 1440 DAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
AE++R+ + T I + H M DR+ V++ G
Sbjct: 170 RAELKRLQQRLGT--TTIYVTHDQVEAMTMADRIAVMNDG 207
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 3e-14
Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 37/211 (17%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------T 710
+ +++L + KG++ ++G G+GK++ L + GE+ SG + G
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSL 77
Query: 711 AYVAQTSWIQNG-TIEENILF-----GLPMNRAKYGEVVRVCCLEKDLEMMEYGDQ--TE 762
Y Q + + T+ E++ F GLP +++ E V E L ++ D+
Sbjct: 78 GYCPQFDALFDELTVREHLRFYARLKGLP--KSEIKEEV-----ELLLRVLGLTDKANKR 130
Query: 763 IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTI 822
LSGG K+++ LA A+ + LLD+ S +D + I+ + + KG++I
Sbjct: 131 AR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW-DLILEVRKGRSI 185
Query: 823 ILVTHQ---VDFLHNVDLILVMREGMIVQSG 850
IL TH + L D I +M +G + G
Sbjct: 186 ILTTHSMDEAEAL--CDRIAIMSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 3e-14
Identities = 65/213 (30%), Positives = 112/213 (52%), Gaps = 31/213 (14%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSR 1344
LK + L+++ GE ++G G+GKSTL++V + EP+ G I I+ I+ + L H L ++
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD-HKLAAQ 79
Query: 1345 FG--IIPQE-PVLFEGTVRSNIDPIGQYSDEEIW--------KSLERCQ-LKDVVAAKPD 1392
G II QE V+ E TV N+ IG++ +++ + R + V K D
Sbjct: 80 LGIGIIYQELSVIDELTVLENL-YIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD 138
Query: 1393 KLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAE------IQRI 1446
LD VA N S+ +Q+L + + ++ ++++ MDE T+S+ T+ E I
Sbjct: 139 -LDEKVA----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL---TNKEVDYLFLIMNQ 190
Query: 1447 IREEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
+R+E A I+ I+H++ + CDR V+ G
Sbjct: 191 LRKEGTA--IVYISHKLAEIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 4e-14
Identities = 57/200 (28%), Positives = 99/200 (49%), Gaps = 17/200 (8%)
Query: 1281 TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD 1340
TP VLK I+ + G+ + V G TGSGKS+L+ + +EPS G+I G
Sbjct: 439 TP-VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG---------- 487
Query: 1341 LRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKS-LERCQLKDVVAAKPDKLDSLVA 1399
R PQ + GT++ NI G DE + S ++ CQL++ +A P+K +++
Sbjct: 488 ---RISFSPQTSWIMPGTIKDNI-IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLG 543
Query: 1400 DSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIREEFAACTIIS 1458
+ G S GQR + L R + K + L +D +D T+ EI + + + + T I
Sbjct: 544 EGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRIL 603
Query: 1459 IAHRIPTVMDCDRVIVVDAG 1478
+ ++ + D+++++ G
Sbjct: 604 VTSKLEHLKKADKILLLHEG 623
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 4e-14
Identities = 47/185 (25%), Positives = 97/185 (52%), Gaps = 17/185 (9%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
LK ++L + G+ ++G TGSGKS L++ ++P G+I+++G DI+ L +
Sbjct: 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKR 71
Query: 1344 RFGIIPQEPVLFEG-TVRSNID---PIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVA 1399
+PQ LF TV NI + +EI + ++ ++ A+ +D L+
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIER-----KVLEI--AEMLGIDHLLN 124
Query: 1400 DSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ---RIIREEFAACTI 1456
+ S G++Q + + R ++ + ++L +DE +++D +T +++ + IR+EF T+
Sbjct: 125 RKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV-TV 183
Query: 1457 ISIAH 1461
+ + H
Sbjct: 184 LHVTH 188
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 4e-14
Identities = 66/215 (30%), Positives = 91/215 (42%), Gaps = 45/215 (20%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------- 709
LK + L +K+G+ AIVG GSGKS+LLA + G SG+V++ G
Sbjct: 26 LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85
Query: 710 ----TAYVAQT-SWIQNGTIEENILFGL---------PMNRAKYGEVVRVCCLEKDLEMM 755
+V Q+ I N T EN+ L AK + V L K L
Sbjct: 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAK-ALLEAVG-LGKRLT-- 141
Query: 756 EYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTG---SDIFKEC 812
Y Q LSGG++QR+ LARA D+ D+ +D TG +D+
Sbjct: 142 HYPAQ---------LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL 192
Query: 813 VRGALKGKTIILVTHQVDFLHNVDLILVMREGMIV 847
R G T++LVTH D L +R G +V
Sbjct: 193 NRER--GTTLVLVTHDPQLAARCDRQLRLRSGRLV 225
|
Length = 228 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 4e-14
Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 52/225 (23%)
Query: 641 DNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILG--EMH 698
N+ V V+ S ++G++ LKN++ + K G+LTAI+G G+GKS+LL ++ G
Sbjct: 7 RNLTVTVK----SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL 62
Query: 699 KISGKVKVCGT----------TAYVAQ-TSWIQNGTIEENILFGLPMNRAKYGEVVRVCC 747
+SG+V + G YV Q T+ E ++F +
Sbjct: 63 GVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL------------- 109
Query: 748 LEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSD 807
RG+ SGG+++R+ +A + + + LD+ S +D+ +
Sbjct: 110 ------------------RGL--SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQ 149
Query: 808 IFKECVRGALKGKTIILVTHQV--DFLHNVDLILVMREGMIVQSG 850
+ R A G+TII HQ + D +L++ +G ++ G
Sbjct: 150 VMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 4e-14
Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 26/190 (13%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLL------G 1337
+ +G++ +++ GE + V G G GK+TL+++ L+ P G + +G ++
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74
Query: 1338 LHDLRSRFGIIPQEPVLFEGTVRSNID---PIGQYSDEEIWKSLERCQLKDVVAAKPDKL 1394
+ L G+ +P L + N+ I + I +L L
Sbjct: 75 ILYLGHLPGL---KPEL---SALENLHFWAAIHGGAQRTIEDALAAVGLTGFE------- 121
Query: 1395 DSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAAC 1454
D A S GQ++ L L R+ L + L +DE T ++D A + ++R A
Sbjct: 122 DLPAA----QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARG 177
Query: 1455 TIISIAHRIP 1464
I+ +
Sbjct: 178 GIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 4e-14
Identities = 59/203 (29%), Positives = 98/203 (48%), Gaps = 22/203 (10%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE--PSG---GRI 1326
+L V Y S L +K + L I + +G +G GKST+++ F RL + P G++
Sbjct: 15 NLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV 72
Query: 1327 IIDGIDISLLGLH--DLRSRFGIIPQEPVLFEGTVRSNID---PIGQYS---DEEIWKSL 1378
G ++ + ++R R G++ Q+P F ++ NI I Y DE + +SL
Sbjct: 73 TFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSL 132
Query: 1379 ERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQ 1438
+ L D V DKL SG + S GQ+Q LC+ R + ++ MDE +++D
Sbjct: 133 RQAALWDEVK---DKLK----QSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPI 185
Query: 1439 TDAEIQRIIREEFAACTIISIAH 1461
+ I+ ++ E TII + H
Sbjct: 186 STLRIEELMHELKEQYTIIIVTH 208
|
Length = 264 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 4e-14
Identities = 62/208 (29%), Positives = 105/208 (50%), Gaps = 20/208 (9%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSG---- 1323
++ ++L+V Y SN V+KG+ L I ++G +G GKSTL++ F RL+E +
Sbjct: 5 IETVNLRVYYGSNH--VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARV 62
Query: 1324 -GRIIIDGIDISLLGLH--DLRSRFGIIPQEPVLFEG-TVRSNIDPIG------QYSDEE 1373
G + + G +I + ++R G++ Q P F T+ N+ IG S +E
Sbjct: 63 EGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNV-AIGVKLNGLVKSKKE 121
Query: 1374 IWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATA 1433
+ + +E K AA D++ + D N S GQRQ L + R + ++L MDE TA
Sbjct: 122 LDERVEWALKK---AALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTA 178
Query: 1434 SVDSQTDAEIQRIIREEFAACTIISIAH 1461
++D A+I+ ++ E TI+ + H
Sbjct: 179 NIDPVGTAKIEELLFELKKEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 4e-14
Identities = 62/209 (29%), Positives = 106/209 (50%), Gaps = 36/209 (17%)
Query: 654 WDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGK-----VKVCG 708
+ D G+ L++INL ++ G+L ++G G GK++LL I G + G V G
Sbjct: 8 YADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG 67
Query: 709 TTA---YVAQTS----WIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQT 761
A V Q W +N +++N+ FGL + V ++ LE +M++
Sbjct: 68 PGAERGVVFQNEGLLPW-RN--VQDNVAFGLQL-----AGVEKMQRLEIAHQMLKKVGLE 119
Query: 762 EIGERGI-NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL--- 817
+R I LSGGQ+QR+ +ARA+ + + LLD+ F A+DA T +E ++ L
Sbjct: 120 GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT-----REQMQTLLLKL 174
Query: 818 ---KGKTIILVTHQVD---FLHNVDLILV 840
GK ++L+TH ++ F+ +L+L+
Sbjct: 175 WQETGKQVLLITHDIEEAVFMAT-ELVLL 202
|
Length = 255 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 5e-14
Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 33/231 (14%)
Query: 1264 AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSG 1323
A G + + L+V Y +NT VL ++L I GE + ++G++G GK+TL++ V+ +G
Sbjct: 2 ACGGIRIDHLRVAYGANT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG 59
Query: 1324 --GRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNIDPIGQYS--------DE 1372
GRI I D++ H + ++ Q LF V N+ G + E
Sbjct: 60 LTGRIAIADRDLTHAPPH--KRGLALLFQNYALFPHLKVEDNV-AFGLRAQKMPKADIAE 116
Query: 1373 EIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEAT 1432
+ +L+ L D A P +L S G +Q + + R + +L +DE
Sbjct: 117 RVADALKLVGLGDAAAHLPAQL-----------SGGMQQRIAIARAIAIEPDVLLLDEPL 165
Query: 1433 ASVDSQTDA----EIQRIIREEFAACTIISIAH-RIPTVMDCDRVIVVDAG 1478
+++D+ A EI + EE TI+ + H + + D+ ++ G
Sbjct: 166 SALDANIRANMREEIAA-LHEELPELTILCVTHDQDDALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 5e-14
Identities = 61/304 (20%), Positives = 120/304 (39%), Gaps = 25/304 (8%)
Query: 552 SGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQ 611
+ W + VL + A F + G + F + + F + +++
Sbjct: 294 WFQLGYGWLSVVLPILI--AAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIAD 351
Query: 612 AMISLARLDKYMLSRELVNESVER--------VEGCDDNIAVEVRDGVFSWDDENGEECL 663
+L RL ++ + E E+ + + + + + S +G+ L
Sbjct: 352 WRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLEN--LSLRTPDGQTLL 409
Query: 664 KNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--TTAYVAQTSWIQN 721
+N E++ G+ I G G+GK+SLL ++ G SG++ + ++ Q ++
Sbjct: 410 SELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQ 469
Query: 722 GTIEENILFGLPMNR---AKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRI 778
GT+ E + + A+ V+ L E ++ E LSGG++QR+
Sbjct: 470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLD-----EEDRWDRVLSGGEQQRL 524
Query: 779 QLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQ--VDFLHNVD 836
AR + LD+ SA+D D + ++ L T+I V H+ + H+
Sbjct: 525 AFARLLLHKPKWVFLDEATSALDE-ETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQ 583
Query: 837 LILV 840
L L+
Sbjct: 584 LELL 587
|
Length = 604 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 5e-14
Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 14/188 (7%)
Query: 1280 NTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDG--IDISLLG 1337
P VLKG+ + GE + ++G G+GKSTL+ L+ P G ++IDG +D S G
Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKG 62
Query: 1338 LHDLRSRFGIIPQEP--VLFEGTVRSNID--PIGQ-YSDEEIWKSLERCQLKDVVAAKPD 1392
L + R R G++ Q+P LF V ++ P+ S+ E+ ++++ + A
Sbjct: 63 LLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEV-----ERRVREALTAV-- 115
Query: 1393 KLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA 1452
L S G+++ + + + +L +DE TA +D ++ I+R A
Sbjct: 116 GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA 175
Query: 1453 ACTIISIA 1460
+ I+
Sbjct: 176 EGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 5e-14
Identities = 73/249 (29%), Positives = 116/249 (46%), Gaps = 51/249 (20%)
Query: 606 MISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKN 665
MIS +++L LD LS D+ A+EVR+ + D+ + L +
Sbjct: 1 MISHGITLMALPLLDVLNLS--------------DEQTALEVRNLNLFYGDK---QALFD 43
Query: 666 INLEIKKGDLTAIVGTVGSGKSSLLASI-----LGEMHKISGKVKVCGTTAY-------- 712
I++ I K +TA +G G GKS+LL L + +I G++++ G Y
Sbjct: 44 ISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAE 103
Query: 713 -------VAQTSWIQNGTIEENILFGLPM----NRAKYGEVVRVCCLEKDLEMMEYGDQT 761
V Q +I EN+++GL + NR E V E+ L D+
Sbjct: 104 LRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAV-----ERSLRGAALWDEV 158
Query: 762 E--IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKG 819
+ + E LSGGQ+QR+ +ARA+ + ++ LLD+ SA+D + I E + LK
Sbjct: 159 KDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKI--EELITELKS 216
Query: 820 K-TIILVTH 827
K TI++VTH
Sbjct: 217 KYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 5e-14
Identities = 61/225 (27%), Positives = 100/225 (44%), Gaps = 61/225 (27%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI-SGKVKVCGTT----------- 710
L+ ++LE+ KG++T ++G G GK++LL +++G + + SG +++ G
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMG-LLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 711 ---AYVAQTSWIQNG-------TIEENILFGLPMNRAKYGEVV-RVCCLEKDLEMMEYGD 759
AYV Q G T+EEN+L GL + ++ + L L+ M
Sbjct: 75 AGIAYVPQ------GREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEM---- 124
Query: 760 QTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLD------------DVFSAVDAHTGSD 807
+G RG +LSGGQ+Q++ +ARA+ + LLD D+ +
Sbjct: 125 ---LGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVI-----RR 176
Query: 808 IFKECVRGALKGKTIILVTHQVDF-LHNVDLILVMREGMIVQSGR 851
+ E G I+LV +DF D VM G +V SG
Sbjct: 177 LRAE------GGMAILLVEQYLDFARELADRYYVMERGRVVASGA 215
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 6e-14
Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 22/205 (10%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
L + L + G + ++G +GSGKSTL+++ L +P GRI ++G D + + D
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARD--R 72
Query: 1344 RFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSG 1402
+ G + Q LF+ TVR NI G EI K K + A+ ++L LV G
Sbjct: 73 KIGFVFQHYALFKHLTVRDNI-AFGL----EIRK-----HPKAKIKARVEELLELVQLEG 122
Query: 1403 ------DNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE--EFAAC 1454
+ S GQRQ + L R + ++L +DE ++D++ E++ +R+ +
Sbjct: 123 LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV 182
Query: 1455 TIISIAHRIPTVMD-CDRVIVVDAG 1478
T + + H M+ DR++V+ G
Sbjct: 183 TTVFVTHDQEEAMEVADRIVVMSNG 207
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 6e-14
Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 34/215 (15%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ-- 720
L ++N+ I G AI+G GSGKS+LL + G + SG V + G A +
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVITAGKKNKKLK 81
Query: 721 ------------------NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEY-GDQT 761
T+E++I FG PMN +G V +K EM+E G
Sbjct: 82 PLRKKVGIVFQFPEHQLFEETVEKDICFG-PMN---FG-VSEEDAKQKAREMIELVGLPE 136
Query: 762 EIGERG-INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDI---FKECVRGAL 817
E+ R LSGGQ +R+ +A + + ++ +LD+ + +D ++ F + +
Sbjct: 137 ELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE-- 194
Query: 818 KGKTIILVTHQV-DFLHNVDLILVMREGMIVQSGR 851
KG T +LVTH + D D I+VM +G + G
Sbjct: 195 KGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229
|
Length = 290 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (184), Expect = 6e-14
Identities = 60/220 (27%), Positives = 109/220 (49%), Gaps = 26/220 (11%)
Query: 1274 QVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDI 1333
Q+ ++ L +K +L+I GE ++G +GSGKST++++ RL+EP+ G+++IDG+DI
Sbjct: 33 QILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDI 92
Query: 1334 SLLGLHDLR-----------SRFGIIPQEPVLFEGTVRSNIDPI-GQYSDEEIWKSLERC 1381
+ + +LR F ++P VL + I + E+ +L +
Sbjct: 93 AKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQV 152
Query: 1382 QLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDA 1441
L++ + PD+L S G RQ + L R + + +L MDEA +++D
Sbjct: 153 GLENYAHSYPDEL-----------SGGMRQRVGLARALAINPDILLMDEAFSALDPLIRT 201
Query: 1442 EIQRIIREEFAAC--TIISIAHRIPTVMDC-DRVIVVDAG 1478
E+Q + + A TI+ I+H + M DR+ ++ G
Sbjct: 202 EMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNG 241
|
Length = 400 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 7e-14
Identities = 61/221 (27%), Positives = 103/221 (46%), Gaps = 29/221 (13%)
Query: 1274 QVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDG--- 1330
V+ R L I+L I GE + ++G +G+GKSTL+++ L P GRI ++G
Sbjct: 7 NVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVL 66
Query: 1331 IDISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNI---------DPIGQYSDEEIWKSLER 1380
D+S L + D + G + Q LF TV NI P + + L
Sbjct: 67 FDVSNLAVRD--RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRL 124
Query: 1381 CQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTD 1440
QL+ + P +L SG GQRQ + L R + ++L +DE ++D++
Sbjct: 125 VQLEGLADRYPAQL------SG-----GQRQRVALARALAVEPKVLLLDEPFGALDAKVR 173
Query: 1441 AEIQRIIRE--EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
E++R +R+ + T + + H ++ DRV+V++ G
Sbjct: 174 KELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQG 214
|
Length = 345 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 7e-14
Identities = 51/196 (26%), Positives = 76/196 (38%), Gaps = 72/196 (36%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTS 717
G+ LK+I+L I GD +VG G+GKS+LL I GE+ G V
Sbjct: 11 GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW----------- 59
Query: 718 WIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQR 777
G V++ E+ LSGG+K R
Sbjct: 60 ----------------------GSTVKIGYFEQ-------------------LSGGEKMR 78
Query: 778 IQLARAVYQDCDIYLLD------DVFSAVDAHTGSDIFKECVRGALKG--KTIILVTHQV 829
+ LA+ + ++ ++ LLD D+ S E + ALK T+ILV+H
Sbjct: 79 LALAKLLLENPNLLLLDEPTNHLDLES-----------IEALEEALKEYPGTVILVSHDR 127
Query: 830 DFLHNV-DLILVMREG 844
FL V I+ + +G
Sbjct: 128 YFLDQVATKIIELEDG 143
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 7e-14
Identities = 60/221 (27%), Positives = 104/221 (47%), Gaps = 24/221 (10%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVC-----GTTAY 712
+G+ L I+LE+K G++ AI+G GSGK++LL I +G ++V +
Sbjct: 14 HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSL 73
Query: 713 VAQTSWI-----QNGTIEENILFGLPMNRAKYGEVVR---VCCLEKDLEMMEYGDQ--TE 762
Q I G + +N F L +R ++ + E E + +
Sbjct: 74 SQQKGLIRQLRQHVGFVFQN--FNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAK 131
Query: 763 IGERGIN------LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGA 816
+G G LSGGQ+QR+ +ARA+ ++ L D+ SA+D ++ + A
Sbjct: 132 VGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLA 191
Query: 817 LKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALL 856
+ +T+++VTH++ F +V D + M +G IV+ G AL
Sbjct: 192 QEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232
|
Length = 250 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 8e-14
Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 18/159 (11%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------------ 710
L NI+L ++ G+ AI G G GKS+LL + + SG + G
Sbjct: 19 LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQ 78
Query: 711 -AYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGIN 769
+Y AQT + T+E+N++F + R + + L + + I
Sbjct: 79 VSYCAQTPALFGDTVEDNLIFPWQI-RNRRPDRAAALDLLARFALPDSILTKNIT----E 133
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDI 808
LSGG+KQRI L R + I LLD++ SA+D +I
Sbjct: 134 LSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172
|
Length = 223 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 8e-14
Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 45/212 (21%)
Query: 1274 QVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDI 1333
++ ++ + + ++L + GE ++G +GSGKSTL++ RL+EP+ G+++IDG DI
Sbjct: 29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDI 88
Query: 1334 SLLG---LHDLRSR--------FGIIPQEPVLFEGTVRSNI----DPIGQYSDEEIWKS- 1377
+ + L +LR + F ++P TV N+ + G E ++
Sbjct: 89 AAMSRKELRELRRKKISMVFQSFALLPHR------TVLENVAFGLEVQGVPRAEREERAA 142
Query: 1378 --LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASV 1435
LE L+ PD+L SG G +Q + L R + +L MDEA
Sbjct: 143 EALELVGLEGWEHKYPDEL------SG-----GMQQRVGLARALAVDPDILLMDEAF--- 188
Query: 1436 DSQTDAEIQRIIREEFAAC------TIISIAH 1461
S D I+R +++E TI+ I H
Sbjct: 189 -SALDPLIRREMQDELLRLQAELQKTIVFITH 219
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 8e-14
Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 27/205 (13%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWI--- 719
L +I+ ++KG++ ++G G+GK++ + ILG + SG+V G +A + I
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYL 75
Query: 720 -------QNGTIEENILF-----GLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERG 767
+ + +++ GL A+ + LE+ LE+ EY ++ R
Sbjct: 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-RRIDEW--LER-LELSEYANK-----RV 126
Query: 768 INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRG-ALKGKTIILVT 826
LS G +Q++Q AV D ++ +LD+ FS +D ++ K+ +R A GKT+IL T
Sbjct: 127 EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIRELARAGKTVILST 185
Query: 827 HQVDFLHNV-DLILVMREGMIVQSG 850
HQ++ + + D +L++ +G V G
Sbjct: 186 HQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 8e-14
Identities = 65/216 (30%), Positives = 102/216 (47%), Gaps = 36/216 (16%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTS 717
+G+E + N++L I G+ ++G G GK+++L I G SG++ + G +
Sbjct: 25 DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQD--ITHVP 82
Query: 718 WIQNG--------------TIEENILFGLPMNRAKYGEVV-RVCCLEKDLEMMEYGDQTE 762
T+ EN+ FGL M + E+ RV + L M++ E
Sbjct: 83 AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRV---MEALRMVQL---EE 136
Query: 763 IGERGI-NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK--- 818
+R LSGGQ+QR+ +ARAV + LLD+ SA+D ++ ++ LK
Sbjct: 137 FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK-----LRKQMQNELKALQ 191
Query: 819 ---GKTIILVTH-QVDFLHNVDLILVMREGMIVQSG 850
G T + VTH Q + L D I+VMR+G I Q G
Sbjct: 192 RKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227
|
Length = 375 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 9e-14
Identities = 71/209 (33%), Positives = 110/209 (52%), Gaps = 32/209 (15%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
VLKGI ++H GE ++G G+GKSTL+++ +V P G + I G + L
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLT-PAKAH 84
Query: 1344 RFGI--IPQEPVLFEG-TVRSNID---PIGQYSDEEIWKSLER--CQLK-DVVAAKPDKL 1394
+ GI +PQEP+LF +V+ NI P Q S +++ + L CQL D A +
Sbjct: 85 QLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLE-- 142
Query: 1395 DSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRI---IREEF 1451
VAD RQ++ + R +++ SR+L +DE TAS+ T AE +R+ IRE
Sbjct: 143 ---VAD---------RQIVEILRGLMRDSRILILDEPTASL---TPAETERLFSRIRELL 187
Query: 1452 A-ACTIISIAHRIPTVMD-CDRVIVVDAG 1478
A I+ I+H++P + DR+ V+ G
Sbjct: 188 AQGVGIVFISHKLPEIRQLADRISVMRDG 216
|
Length = 510 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 1e-13
Identities = 60/199 (30%), Positives = 89/199 (44%), Gaps = 22/199 (11%)
Query: 668 LEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG---TTAYVAQ---TSWIQN 721
L +G++TAIVG GSGKS+LL I G SG+V + G T A A + Q
Sbjct: 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78
Query: 722 G------TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQK 775
T+E+N+ GL K R +E L + G LSGG++
Sbjct: 79 NNLFAHLTVEQNVGLGL-SPGLKLTAEDRQA-IEVALARV--GLAGLEKRLPGELSGGER 134
Query: 776 QRIQLARAVYQDCDIYLLDDVFSAVDA---HTGSDIFKECVRGALKGKTIILVTHQV-DF 831
QR+ LAR + +D + LLD+ F+A+D D+ + T+++VTHQ D
Sbjct: 135 QRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE--TKMTVLMVTHQPEDA 192
Query: 832 LHNVDLILVMREGMIVQSG 850
++ + G I G
Sbjct: 193 KRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 1e-13
Identities = 59/224 (26%), Positives = 106/224 (47%), Gaps = 26/224 (11%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ 720
E LK ++L+ GD+ +I+G+ GSGKS+ L I G + V G T + + Q
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQ 78
Query: 721 NGTIEENIL----FGLPMNRAKYGEVVRVCCLEKDLEM----------------MEYGDQ 760
++N L L M + + LE +E ++Y +
Sbjct: 79 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAK 138
Query: 761 TEIGERG-----INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRG 815
I ER ++LSGGQ+QR+ +ARA+ + ++ L D+ SA+D ++ + +
Sbjct: 139 VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL 198
Query: 816 ALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLNS 858
A +GKT+++VTH++ F +V ++ + +G I + G L +
Sbjct: 199 AEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242
|
Length = 257 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 1e-13
Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 24/204 (11%)
Query: 1273 LQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL-----VEPSGGRII 1327
L Y L I+L + ++G +G GKST ++ R+ G I+
Sbjct: 12 LSFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEIL 69
Query: 1328 IDGIDI--SLLGLHDLRSRFGIIPQEPVLFEGTVRSNID---PIGQYSD-----EEIWKS 1377
+DG +I + + +LR R G++ Q+P F ++ N+ + D E + +S
Sbjct: 70 LDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERS 129
Query: 1378 LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS 1437
L L D V D+L +S S GQ+Q LC+ R + +L MDE +++D
Sbjct: 130 LRHAALWDEVK---DRLH----ESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP 182
Query: 1438 QTDAEIQRIIREEFAACTIISIAH 1461
+I+ +I E A TII + H
Sbjct: 183 IATQKIEELIHELKARYTIIIVTH 206
|
Length = 253 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 1e-13
Identities = 65/220 (29%), Positives = 114/220 (51%), Gaps = 20/220 (9%)
Query: 1270 LIDLQVRYRSNTPLVLK---GITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGG-- 1324
+ ++ RY S V+K ++L + GE G+VG +G+GK+TL ++ ++EP+ G
Sbjct: 282 VRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEV 341
Query: 1325 --RIIIDGIDISLLGLHDLRSR----FGIIPQEPVLF-EGTVRSNI-DPIGQYSDEEIWK 1376
R+ + +D++ G D R R GI+ QE L+ TV N+ + IG +E+ +
Sbjct: 342 NVRVGDEWVDMTKPGP-DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELAR 400
Query: 1377 SLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVD 1436
LK +V +K + ++ D S G+R + L +V++K R++ +DE T ++D
Sbjct: 401 MKAVITLK-MVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMD 459
Query: 1437 SQTDAEIQRII---REEFAACTIISIAHRIPTVMD-CDRV 1472
T ++ I REE T I ++H + V+D CDR
Sbjct: 460 PITKVDVTHSILKAREEMEQ-TFIIVSHDMDFVLDVCDRA 498
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (177), Expect = 2e-13
Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 22/205 (10%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSR 1344
L G++ SI GE + ++G+ GSGKST ++ L E G++ IDG ++ + +LR +
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 1345 FGIIPQEP------VLFEGTVRSNIDPIGQYSDEEIWK---SLERCQLKDVVAAKPDKLD 1395
G++ Q P E V ++ G +E I + +L + D +P +L
Sbjct: 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARL- 141
Query: 1396 SLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE--EFAA 1453
S GQ+Q + + ++ ++ +DE+T+ +D EI R+I E E
Sbjct: 142 ----------SGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQ 191
Query: 1454 CTIISIAHRIPTVMDCDRVIVVDAG 1478
T++SI H + DR++V+ AG
Sbjct: 192 LTVLSITHDLDEAASSDRILVMKAG 216
|
Length = 277 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 2e-13
Identities = 74/276 (26%), Positives = 124/276 (44%), Gaps = 54/276 (19%)
Query: 640 DDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASI-----L 694
NI + +++ S+ E +KN+ +I +G +TA++G G GKS++L S+ L
Sbjct: 9 SKNIIISLQNVTISYGTF---EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDL 65
Query: 695 GEMHKISGKVKVCGTTAYVAQTSWIQ---------------NGTIEENILFGLPMN--RA 737
E + G+V GT Y + ++ +I ENI FG +N
Sbjct: 66 IEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTG 125
Query: 738 KYGEVVRVCCLEKDLEMMEYGDQTE--IGERGINLSGGQKQRIQLARAVYQDCDIYLLDD 795
E+V E+ L D+ + + E G +LSGGQ+QR+ +AR + + ++ L+D+
Sbjct: 126 DMDELV-----ERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDE 180
Query: 796 VFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQ--SGRYN 853
SA+D + I +E + K TI++VTH M++ + V + +N
Sbjct: 181 PCSALDPISTLKI-EETMHELKKNFTIVIVTHN------------MQQAVRVSDMTAFFN 227
Query: 854 ALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPK 889
A G G + LVE +T NSPK
Sbjct: 228 AEEVEGGSGGKV-------GYLVEFNETKKIFNSPK 256
|
Length = 269 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 56/193 (29%), Positives = 95/193 (49%), Gaps = 24/193 (12%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE--P---SGGRIIIDGIDI--SLLG 1337
LK I L I + +G +G GKSTL++ F R+ E P + G I++DG +I
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 1338 LHDLRSRFGIIPQEPVLFEGTVRSNID-PIGQYS-------DEEIWKSLERCQLKDVVAA 1389
+ LR++ G++ Q+P F ++ NI + + DE + +L + L + V
Sbjct: 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK- 147
Query: 1390 KPDKLDSLVADSGDNWSVGQRQLLCLGR-VMLKHSRLLFMDEATASVDSQTDAEIQRIIR 1448
DKL SG + S GQ+Q LC+ R + ++ LL DE +++D + I+ +I
Sbjct: 148 --DKLHQ----SGYSLSGGQQQRLCIARGIAIRPEVLLL-DEPCSALDPISTGRIEELIT 200
Query: 1449 EEFAACTIISIAH 1461
E T++ + H
Sbjct: 201 ELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 62/225 (27%), Positives = 102/225 (45%), Gaps = 28/225 (12%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE-----PSGGRI 1326
+L + Y S +L I L I+ E +G +G GKST ++ F R+ + G +
Sbjct: 10 NLNLWYGSKQ--ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL 67
Query: 1327 IIDGIDISLLGLHD--LRSRFGIIPQEPVLFEGTVRSNIDPIG----------QYSDEEI 1374
IDGID+ + + LR++ G++ Q+P F ++ N+ G + DE +
Sbjct: 68 DIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNV-AYGPKLHGLAKNKKKLDEIV 126
Query: 1375 WKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATAS 1434
KSL L + +L + DS S GQ+Q LC+ R + +L MDE ++
Sbjct: 127 EKSLTSVGLWE-------ELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSA 179
Query: 1435 VDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
+D I+ +I+E TII + H + DRV +G
Sbjct: 180 LDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSG 224
|
Length = 251 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 2e-13
Identities = 59/228 (25%), Positives = 97/228 (42%), Gaps = 42/228 (18%)
Query: 1271 IDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDG 1330
R + L ++ G + GR+GSGK+TLI++ L P G I+++G
Sbjct: 3 ARFSKRL-GDFSLDAD---FTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNG 58
Query: 1331 IDIS------LLGLHDLRSRFGIIPQEPVLFEG-TVRSNID--------PIGQYSDEEIW 1375
+ L + R G + QE LF +VR N+ + S E +
Sbjct: 59 RTLFDSRKGIFLPPE--KRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERV- 115
Query: 1376 KSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASV 1435
+E + ++ P +L SG G++Q + +GR +L RLL MDE A++
Sbjct: 116 --IELLGIGHLLGRLPGRL------SG-----GEKQRVAIGRALLSSPRLLLMDEPLAAL 162
Query: 1436 DSQTDAEI----QRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
D EI +R+ E +S H + V+ DRV+V++ G
Sbjct: 163 DDPRKYEILPYLERLHAEFGIPILYVS--HSLQEVLRLADRVVVLEDG 208
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 3e-13
Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 15/229 (6%)
Query: 656 DENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT----- 710
+ N + LK++ IK G I G GSGKSSL + + GK+ + G
Sbjct: 30 ENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLP 89
Query: 711 --------AYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTE 762
+ + Q + +G+I N+ + E + + L+ ++ + G
Sbjct: 90 LHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAV 149
Query: 763 IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTI 822
+ E G N S GQ+Q LARA + I ++D+ +++D T +I ++ V A +T+
Sbjct: 150 VTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT-ENILQKVVMTAFADRTV 208
Query: 823 ILVTHQVDFLHNVDLILVMREGMIVQSGR-YNALLNSGMDFGALVAAHE 870
+ + H+V + + DL+LV+ G++V+ N L F +LV +
Sbjct: 209 VTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRTDK 257
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 3e-13
Identities = 59/224 (26%), Positives = 113/224 (50%), Gaps = 25/224 (11%)
Query: 1268 VDLIDLQVRYRSN-TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRI 1326
+++ +L +Y+ + L ++ + GE + ++G GSGKST +++ L+E G+I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1327 IIDGIDISLLGLHDLRSRFGIIPQEP------VLFEGTVRSNIDPIG---QYSDEEIWKS 1377
IIDG ++ + D+R + G++ Q P E V ++ G + E + ++
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 1378 LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS 1437
LE ++D +P +L S GQ+Q + + + +++ +DEAT+ +D
Sbjct: 125 LELVGMQDFKEREPARL-----------SGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 1438 QTDAE-IQRI--IREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
+ E I+ I IR+++ T+ISI H + V DRV+V+ G
Sbjct: 174 EGRLELIKTIKGIRDDYQM-TVISITHDLDEVALSDRVLVMKNG 216
|
Length = 279 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 3e-13
Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 33/211 (15%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
+L+G++L + GE V+GR G GK+TL++ L+ G I +DG DI+ L H+ R+
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE-RA 73
Query: 1344 RFGI--IPQE----PVLFEGTVRSNI----DPIGQYS---DEEIWKSLERCQLKDVVAAK 1390
R GI +PQ P L TV N+ + + S +EI+ +L V
Sbjct: 74 RAGIAYVPQGREIFPRL---TVEENLLTGLAALPRRSRKIPDEIY------ELFPV---- 120
Query: 1391 PDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE- 1449
L ++ G + S GQ+Q L + R ++ +LL +DE T + +I R+IR
Sbjct: 121 ---LKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRL 177
Query: 1450 -EFAACTIISIAHRIPTVMDC-DRVIVVDAG 1478
I+ + + + DR V++ G
Sbjct: 178 RAEGGMAILLVEQYLDFARELADRYYVMERG 208
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 3e-13
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 25/211 (11%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLL---GLHD 1340
VL ++LS+ GE + ++GR+G GKSTL ++ L PS G + G ++ L
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86
Query: 1341 LRSRFGIIPQEP---VLFEGTVRSNID-PIGQYSD----EEIWKSLERCQLKDVVAAKPD 1392
R ++ Q+ V TVR I P+ E + ++ E + D+ + D
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLD 146
Query: 1393 KLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRI---IRE 1449
K + SG GQ Q +CL R + +LL +DEA +++D A + R+ +++
Sbjct: 147 KRPPQL--SG-----GQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQ 199
Query: 1450 EFA-ACTIISIAHRIPTVMD-CDRVIVVDAG 1478
+F AC I+ H + V C RV+V+D G
Sbjct: 200 QFGTACLFIT--HDLRLVERFCQRVMVMDNG 228
|
Length = 268 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 3e-13
Identities = 57/234 (24%), Positives = 102/234 (43%), Gaps = 60/234 (25%)
Query: 657 ENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQT 716
E +E LK +NL +K+G++ AI+G GSGKS+L +I+G K +V
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP-----KYEV---------- 58
Query: 717 SWIQNGTI---EENILFGLPMNRAKYG-----------------EVVRVCC--------- 747
G I E+IL P RA+ G + +R
Sbjct: 59 ---TEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGI 115
Query: 748 -------LEKDLEMMEYGDQTEIGERGIN--LSGGQKQRIQLARAVYQDCDIYLLDDVFS 798
L++ E++ + E ER +N SGG+K+R ++ + + + + +LD+ S
Sbjct: 116 LPEFIKELKEKAELLGLDE--EFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDS 173
Query: 799 AVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNV--DLILVMREGMIVQSG 850
+D + + +G+ ++++TH L + D + V+ +G IV+SG
Sbjct: 174 GLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 3e-13
Identities = 64/228 (28%), Positives = 109/228 (47%), Gaps = 37/228 (16%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
+E+R+ S+D G+ + +++L I KG++ A++G G GKS+LL + G +G++
Sbjct: 20 LEIRNLTKSFD---GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI 76
Query: 705 KVCGTT-AYVA-----------QTSWIQNGTIEENILFGLPMNRAKYGEVV-RVCCLEKD 751
+ G ++V + + T+E+NI FGL ++ E+ RV
Sbjct: 77 MLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVN----- 131
Query: 752 LEMMEYGDQTEIGERGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDA-------H 803
EM+ E +R + LSGGQ+QR+ LAR++ + + LLD+ A+D
Sbjct: 132 -EMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQL 190
Query: 804 TGSDIFKECVRGALKGKTIILVTH-QVDFLHNVDLILVMREGMIVQSG 850
DI + G T ++VTH Q + + I +M G VQ G
Sbjct: 191 EVVDILERV------GVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIG 232
|
Length = 377 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 21/183 (11%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG----TTAYV 713
G ++ + G+ + G GSGK++LL I G + +G +K+ G
Sbjct: 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVA 72
Query: 714 AQTSWI--QNG-----TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGER 766
++ +N T+ EN+ F A G + LE + +
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFW----AAFLGG--EELDIAAALEAVGLAPLAHL--P 124
Query: 767 GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILV 825
LS GQK+R+ LAR + + I++LD+ +A+DA +F E +R L G +I
Sbjct: 125 FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA-AVALFAELIRAHLAQGGIVIAA 183
Query: 826 THQ 828
TH
Sbjct: 184 THI 186
|
Length = 207 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 4e-13
Identities = 62/215 (28%), Positives = 102/215 (47%), Gaps = 37/215 (17%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------- 709
L N+N+EI+ G+ ++G GSGKS+L+ + G + SGK+ + G
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 710 --TAYVAQTSWIQ--NGTIEENILFGLPMNRAKYGEVV--RVCCLEKDLEMM-----EYG 758
V Q Q TIE++I FG P+N E + RV ++ + ++ +Y
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFG-PINLGLSEEEIENRV---KRAMNIVGLDYEDYK 138
Query: 759 DQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK 818
D++ LSGGQK+R+ +A V + I +LD+ + +D +I + ++ K
Sbjct: 139 DKSPF-----ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNK-IKELHK 192
Query: 819 GK--TIILVTHQV-DFLHNVDLILVMREGMIVQSG 850
TIILV+H + D D I+VM +G G
Sbjct: 193 EYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQG 227
|
Length = 287 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 4e-13
Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 23/192 (11%)
Query: 657 ENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------- 709
G E LK +N ++G++ A++G G+GKS+LL + G + SG V + G
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 710 --------TAYVAQTSWIQ--NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGD 759
V Q Q +++++ FG P+N V + E +
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAADVDQDVAFG-PLNLGLSEAEVE----RRVREALTAVG 116
Query: 760 QTEIGERGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK 818
+ + ER + LSGG+K+R+ +A AV D+ LLD+ + +D + R +
Sbjct: 117 ASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE 176
Query: 819 GKTIILVTHQVD 830
G T+++ TH VD
Sbjct: 177 GMTVVISTHDVD 188
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 5e-13
Identities = 44/221 (19%), Positives = 98/221 (44%), Gaps = 28/221 (12%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-----------TA 711
L +++ ++ G++ ++G G+GK++L I G + SG V G
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 712 YVA---QTSWI-QNGTIEENILFGLPMNRAKYGEVVRVCCLEKDL--EMMEYGDQTEIGE 765
+ Q + T+ EN++ + R E++ E ++ + +
Sbjct: 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD 135
Query: 766 RG----INLSGGQKQRIQLARAVYQDCDIYLLDDVF---SAVDAHTGSDIFKECVRGALK 818
LS GQ++R+++ARA+ D + LLD+ + + +++ +E +
Sbjct: 136 LADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE---R 192
Query: 819 GKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLNS 858
G T++LV H +D + ++ D + V+ +G ++ G + + N+
Sbjct: 193 GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 5e-13
Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 41/209 (19%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
LK I+ I+ GE++G++G G+GKSTL+++ + +P+ G++ + G L+ L
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELG---- 97
Query: 1344 RFGIIPQEPVLFEGTVRSNIDPIGQY---SDEEIWKSLERCQLKDVVAAKPDKLDSLV-- 1398
G P E T R NI G + +EI +K+D ++
Sbjct: 98 -AGFDP------ELTGRENIYLRGLILGLTRKEI----------------DEKVDEIIEF 134
Query: 1399 ADSGD-------NWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF 1451
A+ GD +S G L +L +DE A D+ + + E
Sbjct: 135 AELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELV 194
Query: 1452 -AACTIISIAHRIPTVMD-CDRVIVVDAG 1478
TI+ ++H + + CDR I ++ G
Sbjct: 195 EKNKTIVLVSHDLGAIKQYCDRAIWLEHG 223
|
Length = 249 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 5e-13
Identities = 119/562 (21%), Positives = 218/562 (38%), Gaps = 82/562 (14%)
Query: 949 WGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRA 1008
W ++V+ LS+A S G L++ + L + + +L MV ++
Sbjct: 13 WPFISVMALSLA---SGALGIGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLISQ 69
Query: 1009 YFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNID---LFLPFFV 1065
+T +G S+ ++ IL P+ + S R+L+ ++D NI LP V
Sbjct: 70 LGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELV 129
Query: 1066 -GITVAMYITLLGIFIITCQYAW---PTIFLVIPLA-----WANYWY--RGY-YLSTSRE 1113
I + + + Y P +FL+ + W + R Y +++ +RE
Sbjct: 130 QAII---------LTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARE 180
Query: 1114 LTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNL------RMDFHNN 1167
T+ + + + + G + ++ + N+ + R + +
Sbjct: 181 -------TEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANTFHL 233
Query: 1168 GSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPENVGLSLSYG-LSLNGVLFWAIYMS 1226
+ W L L F LA S+ NV ++ L L L A+ +
Sbjct: 234 LAVNWSNIMLLGLIGLVFWLALSL--GWAST-----NVAATIVLVLLFLRTPLLSAVGIL 286
Query: 1227 CFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLK 1286
+ V+ +I + P +A + P+W ++L +++ Y+ N +
Sbjct: 287 PTLLTAQVAFNKIAKLELAPYKADFPRPQ--AFPDWKT---LELRNVRFAYQDNA-FHVG 340
Query: 1287 GITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346
I L+I GE + ++G GSGKSTL + L +P G I++DG +S L D R F
Sbjct: 341 PINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFS 400
Query: 1347 IIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWS 1406
+ + LF+ + P G+ S + I K L+R +L + + +L S
Sbjct: 401 AVFSDYHLFDQLL----GPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNL------KLS 450
Query: 1407 VGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF----------AACTI 1456
GQ++ L L +L+ +L +DE A D R EF TI
Sbjct: 451 TGQKKRLALLLALLEERDILVLDEWAADQDP--------AFRREFYQVLLPLLKEQGKTI 502
Query: 1457 ISIAHRIPTVMDCDRVIVVDAG 1478
+I+H + DR++ + G
Sbjct: 503 FAISHDDHYFIHADRLLEMRNG 524
|
Length = 546 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 5e-13
Identities = 66/218 (30%), Positives = 107/218 (49%), Gaps = 39/218 (17%)
Query: 658 NGEE---CLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK-ISGKVKVCGTTAYV 713
+GEE LK I+L+I G++ AIVG GSGKS+L+ +ILG + K SG +V G V
Sbjct: 16 SGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLM-NILGCLDKPTSGTYRVAGQD--V 72
Query: 714 AQTSWIQNGTIEENIL-------FGLPMNR----------------AKYGEVVRVCCLEK 750
A T++ + L FG R A Y + R L +
Sbjct: 73 A--------TLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLR 124
Query: 751 DLEMME-YGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIF 809
E+++ G + + + LSGGQ+QR+ +ARA+ + L D+ A+D+H+G ++
Sbjct: 125 AQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVM 184
Query: 810 KECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIV 847
+ +G T+I+VTH + ++ +R+G IV
Sbjct: 185 AILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 5e-13
Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 18/181 (9%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTA--------YVA 714
LK +NL I++G+ +++G G GKS+LL I G SG V + G V
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 715 QT----SWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINL 770
Q W+ T+ ENI + + R +E+ + ++ + + +R L
Sbjct: 61 QNYSLLPWL---TVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAAD--KRPGQL 115
Query: 771 SGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQV 829
SGG KQR+ +ARA+ + LLD+ F A+DA T ++ +E ++ + T+++VTH V
Sbjct: 116 SGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDV 175
Query: 830 D 830
D
Sbjct: 176 D 176
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 7e-13
Identities = 60/209 (28%), Positives = 94/209 (44%), Gaps = 21/209 (10%)
Query: 1274 QVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDI 1333
V Y + +L I+ S+ GE + G +G GKSTL+++ L+ P+ G ++ +G DI
Sbjct: 12 NVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDI 71
Query: 1334 SLLGLHDLRSRFGIIPQEPVLFEGTVRSN-IDPI---GQYSDEE-IWKSLERCQLKDVVA 1388
S L R + Q P LF TV N I P Q D LER L D +
Sbjct: 72 STLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTIL 131
Query: 1389 AKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII- 1447
K + SG G++Q + L R + ++L +DE T+++D + II
Sbjct: 132 TKN-----IAELSG-----GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIH 181
Query: 1448 ---REEFAACTIISIAHRIPTVMDCDRVI 1473
RE+ A ++ + H + D+VI
Sbjct: 182 RYVREQNIA--VLWVTHDKDEINHADKVI 208
|
Length = 225 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 8e-13
Identities = 61/239 (25%), Positives = 105/239 (43%), Gaps = 58/239 (24%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK-----ISGKV------------- 704
+ ++ E+KKG++ IVG GSGKS L +I+G + K + G++
Sbjct: 21 VDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80
Query: 705 ---KVCGTT-AYVAQ---TSW-----IQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDL 752
K+ G A + Q TS I + I E + K + E+ +
Sbjct: 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGD-QIAEVLRLHGKGLSKKEAK-------ERAI 132
Query: 753 EMMEYGDQTEIG----ERGIN-----LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAH 803
E++E +G ER + LSGG +QR+ +A A+ + + + D+ +A+D
Sbjct: 133 ELLE-----LVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVT 187
Query: 804 TGS---DIFKECVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLNS 858
+ D+ KE R KG +IL+TH + + + D + VM G IV+ G + +
Sbjct: 188 VQAQILDLLKELQRE--KGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 8e-13
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFR---LVEPS--GGRIIIDGIDI--SLLG 1337
LK I L I + ++G +G GKST ++ R L+ G +++DG DI S +
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 1338 LHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYS------------DEEIWKSLERCQLKD 1385
++ LR R G++ Q+P F ++ N+ Y DE + KSL+ L D
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNV----AYGPRTHGIKDKKKLDEIVEKSLKGAALWD 134
Query: 1386 VVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQR 1445
V D+L S S GQ+Q LC+ R + +L MDE T+++D + +I+
Sbjct: 135 EVK---DRLKK----SALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEE 187
Query: 1446 IIREEFAACTIISIAH 1461
+I+E TI+ + H
Sbjct: 188 LIQELKKDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 9e-13
Identities = 49/209 (23%), Positives = 94/209 (44%), Gaps = 21/209 (10%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
+L G++L + GE + ++G G+GKSTL++ + P G + ++G+ ++ +L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 1344 RFGIIPQEPVL-FEGTVRSNID----PIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLV 1398
++PQ L F TV+ + P + E E ++ A D L L
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPE-----EDERIAAQALAATD-LSGLA 129
Query: 1399 ADSGDNWSVGQRQLLCLGRVMLKHS------RLLFMDEATASVDSQTDAEIQRIIREEFA 1452
S G++Q + L RV+ + R LF+DE T+++D R+ R + A
Sbjct: 130 GRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR-QLA 188
Query: 1453 A--CTIISIAHRIP-TVMDCDRVIVVDAG 1478
++++ H + DR++++ G
Sbjct: 189 REGGAVLAVLHDLNLAAQYADRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-12
Identities = 49/215 (22%), Positives = 87/215 (40%), Gaps = 36/215 (16%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------- 709
G E L++++ I KG+ + G G+GKS+LL I GE GK+ V G
Sbjct: 13 GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGR 72
Query: 710 --------TAYVAQT-SWIQNGTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEY 757
V Q + + T+ EN+ L + V E
Sbjct: 73 EIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRV-----------SEV 121
Query: 758 GDQTEIGERG----INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECV 813
D + + LSGG++QR+ +ARA+ + L D+ +D +I +
Sbjct: 122 LDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFE 181
Query: 814 RGALKGKTIILVTHQVDFLHNVDL-ILVMREGMIV 847
G T+++ TH ++ ++ + +L + +G +V
Sbjct: 182 EINRLGTTVLMATHDLELVNRMRHRVLALEDGRLV 216
|
Length = 223 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 1e-12
Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 24/215 (11%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV-------------KVCGT 709
LK+++ I KG T+IVG GSGKS++ ++G SG++ K+
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84
Query: 710 TAYVAQTSWIQ--NGTIEENILFGLPMNRAKYGEVVR-VCCLEKDLEMMEYGDQTEIGER 766
V Q Q ++ ++ FGL + Y E+ R V K ++M+E D
Sbjct: 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPN--- 141
Query: 767 GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR--GALKGKTIIL 824
LSGGQKQR+ +A + + + +LD+ S +D ++ + VR + TII
Sbjct: 142 --ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLL-DLVRKVKSEHNITIIS 198
Query: 825 VTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSG 859
+TH + D ++VM +G + + G + +
Sbjct: 199 ITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
|
Length = 269 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 33/212 (15%)
Query: 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASI-----LGE 696
A+E + + + N +K ++L+I + + A++G G GKS+LL + L E
Sbjct: 2 KFAIETVN-LRVYYGSN--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNE 58
Query: 697 MHKISGKVKVCGTTAYVAQTSWIQ----------------NGTIEENILFGLPMN----- 735
++ G+V++ G Y I+ + TI +N+ G+ +N
Sbjct: 59 EARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKS 118
Query: 736 RAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDD 795
+ + E V L+K E D+ + + NLSGGQ+QR+ +ARA+ I L+D+
Sbjct: 119 KKELDERVE-WALKKAALWDEVKDR--LNDYPSNLSGGQRQRLVIARALAMKPKILLMDE 175
Query: 796 VFSAVDAHTGSDIFKECVRGALKGKTIILVTH 827
+ +D G+ +E + K TI+LVTH
Sbjct: 176 PTANIDP-VGTAKIEELLFELKKEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 1e-12
Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 39/213 (18%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL--------VEPSG 1323
D+ V Y L + L I +G +G GKST ++ R+ V
Sbjct: 24 DVSVFYGEKQ--ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVT--- 78
Query: 1324 GRIIIDGIDI--SLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYS----------- 1370
G+I +DG DI L + +LR+R G++ Q+P F ++ N+ Y
Sbjct: 79 GKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENV----AYGPRIHGLARSKA 134
Query: 1371 --DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFM 1428
DE + SL + L + V D+L + G S GQ+Q LC+ R + ++ M
Sbjct: 135 ELDEIVETSLRKAGLWEEVK---DRLH----EPGTGLSGGQQQRLCIARAIAVSPEVILM 187
Query: 1429 DEATASVDSQTDAEIQRIIREEFAACTIISIAH 1461
DE +++D A+++ +I E TI+ + H
Sbjct: 188 DEPCSALDPIATAKVEELIDELRQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-12
Identities = 49/188 (26%), Positives = 90/188 (47%), Gaps = 15/188 (7%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDG-IDISLLGLHDLRS 1343
L ++ S+ GE ++G G+GK+TL+ V P G ++ DG D++ L H +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR-IA 79
Query: 1344 RFGIIP--QEPVLFEG-TVRSNIDPIGQYSDEEIWKSL-------ERCQLKDVVAAKPDK 1393
R GI Q+P +FE TVR N++ + D+ ++ SL ER ++ +++A
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLE-LALNRDKSVFASLFARLRAEERRRIDELLATI--G 136
Query: 1394 LDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAA 1453
L S GQ+Q L +G ++ + +LL +DE A + + +++
Sbjct: 137 LGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGK 196
Query: 1454 CTIISIAH 1461
+I+ + H
Sbjct: 197 HSILVVEH 204
|
Length = 249 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 32/211 (15%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTS 717
G L +++L I+KG+ + G G+GK++LL + G + G+V++ G +
Sbjct: 13 GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGR 72
Query: 718 WI-----------------QNGTIEENILFGLPMNRAKYGEV-VRVCCLEKDLEMMEYGD 759
+ + T+ EN+ L + K E+ RV L +
Sbjct: 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRV---GAALRQVGLEH 129
Query: 760 QTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS---DIFKE-CVRG 815
+ LSGG++QR+ +ARA+ + L D+ +D D+ K RG
Sbjct: 130 K--ADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187
Query: 816 ALKGKTIILVTHQVDFLHNVDL-ILVMREGM 845
T+I+ TH + + V ++++ +G
Sbjct: 188 T----TVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-12
Identities = 56/191 (29%), Positives = 92/191 (48%), Gaps = 25/191 (13%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG---LHDL 1341
+ +L + GE ++G +GSGKSTL+++ RL+EP+ G I++DG DI+ L L +L
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 1342 RSR--------FGIIPQEPVLFEGTVRSNIDPIGQYSDEEI-WKSLERCQLKDVVAAKPD 1392
R + F ++P VL + + + EE ++LE L+ P+
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163
Query: 1393 KLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA 1452
+L SG G +Q + L R + +L MDEA +++D E+Q + E A
Sbjct: 164 EL------SG-----GMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA 212
Query: 1453 AC--TIISIAH 1461
TI+ I H
Sbjct: 213 KLKKTIVFITH 223
|
Length = 386 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 2e-12
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 28/193 (14%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH------KISGKVKVCGTTAYVA 714
E LK I+L+ + ++TA++G G GKS+ L + L M+ I+G V + G Y
Sbjct: 19 EALKGIDLDFNQNEITALIGPSGCGKSTYLRT-LNRMNDLIPGVTITGNVSLRGQNIYAP 77
Query: 715 QTSWIQ---------------NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGD 759
+Q +I EN+++GL + K V+ +E L+ D
Sbjct: 78 NEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEA-VETSLKQAAIWD 136
Query: 760 QTE--IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL 817
+ + + E ++LSGGQ+QR+ +AR + D+ LLD+ SA+D + + I E + L
Sbjct: 137 EVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQI--ENMLLEL 194
Query: 818 KGK-TIILVTHQV 829
+ + TIILVTH +
Sbjct: 195 RDQYTIILVTHSM 207
|
Length = 252 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 2e-12
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 29/213 (13%)
Query: 668 LEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTA--------YVAQT--- 716
L KG+L ++G G+GK++LL +ILG + G VKV G + YV Q
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 717 SWIQNGTIEENILFGL-----PMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLS 771
+W ++ ++ G + R + V + + + E D+ +GE LS
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRP-VGE----LS 115
Query: 772 GGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS---DIFKECVRGALKGKTIILVTHQ 828
GGQ+QR+ +ARA+ + LLD+ F+ +D T ++F E A G I++ TH
Sbjct: 116 GGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL---AGAGTAILMTTHD 172
Query: 829 -VDFLHNVDLILVMREGMIVQSGRYNALLNSGM 860
+ D ++++ G ++ G L +
Sbjct: 173 LAQAMATCDRVVLL-NGRVIADGTPQQLQDPAP 204
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 35/193 (18%)
Query: 657 ENGEECL-KNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKV--CGTTAYV 713
E GE L +++ + G+ I G G+GK++LL + G + +G+V
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR 70
Query: 714 AQTS----WI--QNG-----TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTE 762
++ Q G T EN+ F + + + E +
Sbjct: 71 ESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIW--------EALAQ----- 117
Query: 763 IGERGI------NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRG- 815
+G G+ LS GQ++R+ LAR +++LD+ F+A+D G + +
Sbjct: 118 VGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKE-GVALLTALMAAH 176
Query: 816 ALKGKTIILVTHQ 828
A +G ++L THQ
Sbjct: 177 AAQGGIVLLTTHQ 189
|
Length = 209 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 3e-12
Identities = 67/268 (25%), Positives = 118/268 (44%), Gaps = 29/268 (10%)
Query: 657 ENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------ 710
E G L+NI+ I G ++G GSGKS+LL++ L + G +++ G +
Sbjct: 14 EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGDIQIDGVSWNSVPL 72
Query: 711 -------AYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMM--EYGDQT 761
+ Q +I +GT +N+ P + E+ +V E L+ + ++ Q
Sbjct: 73 QKWRKAFGVIPQKVFIFSGTFRKNL---DPYGKWSDEEIWKV-AEEVGLKSVIEQFPGQL 128
Query: 762 E--IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKG 819
+ + + G LS G KQ + LAR+V I LLD+ + +D T + ++ ++ A
Sbjct: 129 DFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT-YQVIRKTLKQAFAD 187
Query: 820 KTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVEVG 879
T+IL H+++ + LV+ E + Q LLN F + + ++L
Sbjct: 188 CTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAI-SPSDRLKLFPRR 246
Query: 880 KTMPSGNSPKTPKSPQITSNLQEANGEN 907
+ + K PQI + LQE E
Sbjct: 247 NS----SKSKRKPRPQIQA-LQEETEEE 269
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-12
Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 49/182 (26%)
Query: 1283 LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLR 1342
+L+ ++L+++ GE+IG+VGR G+GKSTL+++ +EP G + GL
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK------GL---- 66
Query: 1343 SRFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADS 1401
R G + QEP L TV + E+ + L L++ A D D L+A+
Sbjct: 67 -RVGYLSQEPPLDPEKTVLDYVIE----GFGELRELLAE--LEEAYALLADPDDELLAEL 119
Query: 1402 G------DNWSV-------------------------GQRQLLCLGRVMLKHSRLLFMDE 1430
D W++ G R+ + L R +L+ LL +DE
Sbjct: 120 EALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDE 179
Query: 1431 AT 1432
T
Sbjct: 180 PT 181
|
Length = 530 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 3e-12
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 42/204 (20%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNG 722
+ ++ IK+G+ +VG G GKS+L ILG SG++ +
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI-------------LFEGK 75
Query: 723 TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMME-YGDQTEIGERG-INLSGGQKQRIQL 780
I + +++ + E V LE++E G E R LSGGQ+QRI +
Sbjct: 76 DITK-------LSKEERRERV--------LELLEKVGLPEEFLYRYPHELSGGQRQRIGI 120
Query: 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDI---FKECVRGALK---GKTIILVTHQVDFLHN 834
ARA+ + + + D+ SA+D + I K+ L+ G T + ++H + +
Sbjct: 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKD-----LQEELGLTYLFISHDLSVVRY 175
Query: 835 V-DLILVMREGMIVQSGRYNALLN 857
+ D I VM G IV+ G + +
Sbjct: 176 ISDRIAVMYLGKIVEIGPTEEVFS 199
|
Length = 268 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (171), Expect = 3e-12
Identities = 69/267 (25%), Positives = 126/267 (47%), Gaps = 56/267 (20%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------- 709
+K+ +L I++G++ I+G GSGKS+++ + + G+V + G
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 710 ----TAYVAQT-SWIQNGTIEENILFGLPM-------NRAKYGEVVRVCCLEKDLEMMEY 757
A V Q+ + + + T+ +N FG+ + R K + +R + LE +
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALR----QVGLENYAH 159
Query: 758 GDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR-GA 816
E LSGG +QR+ LARA+ + DI L+D+ FSA+D +++ E V+ A
Sbjct: 160 SYPDE-------LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA 212
Query: 817 LKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLNS-----------GMDFGA 864
+TI+ ++H +D + D I +M+ G +VQ G + +LN+ G+D
Sbjct: 213 KHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDISQ 272
Query: 865 LVAAHETSMELVEVGKTMPSGNSPKTP 891
+ +A ++ + P+G KTP
Sbjct: 273 VFSAK-------DIARRTPNGLIRKTP 292
|
Length = 400 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 3e-12
Identities = 64/223 (28%), Positives = 106/223 (47%), Gaps = 40/223 (17%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH------KISGKVKVCGTTAY 712
++ L +INL+I K ++TA +G G GKS+ L M+ K+ G++ + G Y
Sbjct: 17 SKQILFDINLDIYKREVTAFIGPSGCGKSTFL-RCFNRMNDFVPNCKVKGELDIDGIDVY 75
Query: 713 VAQTSWI----------QN-----GTIEENI-----LFGLPMNRAKYGEVVRVCCLEKDL 752
T+ + Q +I +N+ L GL N+ K E+V EK L
Sbjct: 76 SVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIV-----EKSL 130
Query: 753 EMMEYGDQTEIGER----GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDI 808
+ G E+G+R LSGGQ+QR+ +ARA+ + L+D+ SA+D +++
Sbjct: 131 TSV--GLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP-VATNV 187
Query: 809 FKECVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
+ ++ K TII+VTH + V D + + G IV+
Sbjct: 188 IENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYN 230
|
Length = 251 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 3e-12
Identities = 61/213 (28%), Positives = 103/213 (48%), Gaps = 29/213 (13%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH------KISGKVKVCGTTAY---- 712
+KN+ ++I K +TAI+G G GK++LL SI M+ ++ GK+ G Y
Sbjct: 19 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSI-NRMNDHIPGFRVEGKIYFKGQDIYDPQL 77
Query: 713 -----------VAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQ- 760
V Q +I +N+ FG ++ K + +E+ L+ D+
Sbjct: 78 DVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRI-VEESLKKAALWDEV 136
Query: 761 -TEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKG 819
+E+ + G LSGGQ+QR+ +ARA+ + ++ LLD+ SA+D I E + L
Sbjct: 137 KSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRI--EKLLEELSE 194
Query: 820 K-TIILVTHQV-DFLHNVDLILVMREGMIVQSG 850
TI++VTH + + D I M G +++ G
Sbjct: 195 NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYG 227
|
Length = 250 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 3e-12
Identities = 58/213 (27%), Positives = 99/213 (46%), Gaps = 29/213 (13%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD--- 1340
+ GI+L++ G+ +G+VG +GSGKSTL RL+ G I DG DI L +
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRP 360
Query: 1341 LRSRFGIIPQEPVLFEGTVRSNIDP---IGQYSDEEIW---KSLERCQLKDVVAAKPDKL 1394
LR R ++ Q+P ++ P +GQ +E + L + V + L
Sbjct: 361 LRRRMQVVFQDPY-------GSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVI---EAL 410
Query: 1395 DSLVADSGDNW------SVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR 1448
+ + D S GQRQ + + R ++ L+ +DE T+++D A++ ++R
Sbjct: 411 EEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLR 470
Query: 1449 EEFAACTI--ISIAHRIPTVMD-CDRVIVVDAG 1478
+ + + I+H + V C RVIV+ G
Sbjct: 471 DLQQKHGLSYLFISHDLAVVRALCHRVIVMRDG 503
|
Length = 534 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 3e-12
Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 26/221 (11%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT---------- 710
+ + ++N E ++G AIVG GSGKS+L+ +I + +G V V T
Sbjct: 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80
Query: 711 -------AYVAQ--TSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQT 761
V Q S + T+E I+FG P N + V+ L +M+ G
Sbjct: 81 RPVRKRIGMVFQFPESQLFEDTVEREIIFG-PKNFKMNLDEVKNYAH--RL-LMDLGFSR 136
Query: 762 EIGERG-INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-G 819
++ + +SGGQ ++I + + + DI +LD+ + +D + + +
Sbjct: 137 DVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDEN 196
Query: 820 KTIILVTHQV-DFLHNVDLILVMREGMIVQSGRYNALLNSG 859
KTIILV+H + + D ++VM+EG IV L
Sbjct: 197 KTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDK 237
|
Length = 286 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 20/205 (9%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSR 1344
L ++L I GE + ++G +GSGK+TL+++ L P G I+ G D + ++ R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDAT---DVPVQER 74
Query: 1345 -FGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSG 1402
G + Q LF TV N+ G + ER + + AK +L LV
Sbjct: 75 NVGFVFQHYALFRHMTVFDNV-AFGL----RVKPRSERPP-EAEIRAKVHELLKLVQLDW 128
Query: 1403 ------DNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE--EFAAC 1454
S GQRQ + L R + ++L +DE ++D++ E++R +R +
Sbjct: 129 LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV 188
Query: 1455 TIISIAHRIPTVMD-CDRVIVVDAG 1478
T + + H ++ DRV+V++ G
Sbjct: 189 TTVFVTHDQEEALEVADRVVVMNKG 213
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 5e-12
Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 47/209 (22%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--TTAYVAQTSWIQ 720
L+N++L + G+ +VG G+GKS+LL + GE+ SG+V Y++Q +
Sbjct: 19 LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLD 78
Query: 721 -NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGER------------- 766
T+ + ++ G R E+ L D + + + E
Sbjct: 79 PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEA 138
Query: 767 ----GI--------NLSGGQKQRIQLARAVYQDCDIYLLD------DVFSAVDAHTGSDI 808
G +LSGG ++R+ LARA+ ++ D+ LLD D+ S
Sbjct: 139 LLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESI--------- 189
Query: 809 FKECVRGALKGK--TIILVTHQVDFLHNV 835
E + LK T+I+V+H FL NV
Sbjct: 190 --EWLEDYLKRYPGTVIVVSHDRYFLDNV 216
|
Length = 530 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 5e-12
Identities = 63/217 (29%), Positives = 99/217 (45%), Gaps = 41/217 (18%)
Query: 640 DDNIAVEVRD-GVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH 698
++ IA+ +D V+ +E +K I+++ +K +TA++G GSGKS+ L S L M+
Sbjct: 16 EEEIALSTKDLHVYYGK----KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRS-LNRMN 70
Query: 699 KISGKVKVCGTTAY---------------------VAQTSWIQNGTIEENILFGLPM--- 734
+V G Y V Q +I ENI F L
Sbjct: 71 DTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGV 130
Query: 735 -NRAKYGEVVRVCCLEKDLEMMEYGDQT--EIGERGINLSGGQKQRIQLARAVYQDCDIY 791
++ E+V E L+ DQ ++ + + LSGGQ+QR+ +ARA+ DI
Sbjct: 131 KDKKVLDEIV-----ETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDIL 185
Query: 792 LLDDVFSAVDAHTGSDIFKECVRGALKGK-TIILVTH 827
L+D+ SA+D + + E LK TII+VTH
Sbjct: 186 LMDEPASALDPISTMQL--EETMFELKKNYTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 5e-12
Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 22/195 (11%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE-----PSGGRIIIDGIDI--SLL 1336
+LK + L I ++G +G GKST I+ R+ + G I +DG+DI +
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 1337 GLHDLRSRFGIIPQEPVLFEGTVRSNID---PIGQYSDEE-----IWKSLERCQLKDVVA 1388
+ +LR + G++ Q+P F ++ N+ I DE+ + +SL+ L D V
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK 137
Query: 1389 AKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR 1448
K DK S + SG GQ+Q LC+ R + ++ MDE +++D + +I+ +I
Sbjct: 138 DKLDK--SALGLSG-----GQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIH 190
Query: 1449 EEFAACTIISIAHRI 1463
+ TI+ + H +
Sbjct: 191 KLKEDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 5e-12
Identities = 62/189 (32%), Positives = 94/189 (49%), Gaps = 29/189 (15%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASI-----LGEMHKISGKVKVCGTTAY----V 713
LK+INL I +TA++G G GKS+LL + L E KI+GK+ + G Y V
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 714 AQTSWIQNG-----------TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTE 762
A I+ G +I EN+ +GL K +V+ +E+ L D E
Sbjct: 79 ADLR-IKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEV-VERSLRGAALWD--E 134
Query: 763 IGER----GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK 818
+ +R LSGGQ+QR+ +AR + + D+ L+D+ SA+D I +E + K
Sbjct: 135 VKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKI-EELMEELKK 193
Query: 819 GKTIILVTH 827
TI++VTH
Sbjct: 194 NYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 6e-12
Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 35/212 (16%)
Query: 641 DNIAVEVRD-GVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASI-----L 694
+E RD VF D E+ L +++++I + +TA++G G GKS+ L I L
Sbjct: 36 GETVIEARDLNVFYGD----EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDL 91
Query: 695 GEMHKISGKVKVCGTTAY---------------VAQTSWIQNGTIEENILFGLPMN--RA 737
+ ++ G++ G Y V Q +I +N+ +GL +
Sbjct: 92 IDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDG 151
Query: 738 KYGEVVRVCCLEKDLEMMEYGDQTE--IGERGINLSGGQKQRIQLARAVYQDCDIYLLDD 795
E V E+ L D+ + + G++LSGGQ+QR+ +ARA+ D ++ L+D+
Sbjct: 152 DIDERV-----EESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDE 206
Query: 796 VFSAVDAHTGSDIFKECVRGALKGKTIILVTH 827
SA+D S I ++ + + T+++VTH
Sbjct: 207 PASALDPVATSKI-EDLIEELAEEYTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 6e-12
Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 38/211 (18%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL--------VEPSG 1323
DL V Y L +++ I + ++G +G GKST ++ R+ VE
Sbjct: 44 DLNVFYGDEQ--ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVE--- 98
Query: 1324 GRIIIDGIDISLLGLHD-------LRSRFGIIPQEPVLFEGTVRSN------IDPIGQYS 1370
G + G ++ +D LR R G++ Q+P F ++ N I
Sbjct: 99 GELTFRGKNV-----YDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDI 153
Query: 1371 DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDE 1430
DE + +SL R L D V D+LDS SG + S GQ+Q LC+ R + ++ MDE
Sbjct: 154 DERVEESLRRAALWDEVK---DQLDS----SGLDLSGGQQQRLCIARAIAPDPEVILMDE 206
Query: 1431 ATASVDSQTDAEIQRIIREEFAACTIISIAH 1461
+++D ++I+ +I E T++ + H
Sbjct: 207 PASALDPVATSKIEDLIEELAEEYTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 6e-12
Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 12/187 (6%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE--PS---GGRIIIDGIDI--SLLG 1337
LK I L IH E ++G +G GKST I+ R+VE PS G+I+ +I
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 1338 LHDLRSRFGIIPQEPVLFEGTVRSNID---PIGQYSDEEIWKSLERCQLKDVVAAKPDKL 1394
+ +LR+ G++ Q+P F ++ N+ I D++ + L+ AA D+L
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRG--AAIWDEL 157
Query: 1395 DSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAAC 1454
+ D+ S GQ+Q LC+ R + ++ MDE T+++D + +++ +++E
Sbjct: 158 KDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDY 217
Query: 1455 TIISIAH 1461
+II + H
Sbjct: 218 SIIIVTH 224
|
Length = 271 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 6e-12
Identities = 60/227 (26%), Positives = 104/227 (45%), Gaps = 35/227 (15%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASI-----LGEMHKISGKVKVCGTTAY----- 712
+++ ++ I+K ++T +G G GKS++L S+ L + + G V G Y
Sbjct: 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83
Query: 713 ----------VAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTE 762
V Q + +I +N+ FGL +NR K RV + L+ D+ +
Sbjct: 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRV---KHALQGAALWDEVK 140
Query: 763 --IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGK 820
+ G++LSGGQ+QR+ +ARA+ + ++ LLD+ SA+D + +E + K
Sbjct: 141 DKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRV-EELMVELKKDY 199
Query: 821 TIILVTHQ---------VDFLHNVDLILVMREGMIVQSGRYNALLNS 858
TI LVTH +VD+ R G +V+ G + +
Sbjct: 200 TIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQN 246
|
Length = 261 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 7e-12
Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 28/218 (12%)
Query: 1274 QVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDI 1333
V + L G++L I GE ++G +G GK+TL+++ P+ G I++DG DI
Sbjct: 5 NVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI 64
Query: 1334 SLLGLHDLRSRFGIIPQEPVLFEG-TVRSNID---PIGQYSDEEIWKSLER----CQLKD 1385
+ L H + + Q LF TV NI + + EI + + QL+
Sbjct: 65 TNLPPH--KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEG 122
Query: 1386 VVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVD----SQTDA 1441
KP +L SG GQ+Q + + R ++ ++L +DE ++D
Sbjct: 123 YANRKPSQL------SG-----GQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQL 171
Query: 1442 EIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
E++R+ +E T + + H + DR+ V++ G
Sbjct: 172 ELKRLQKE--LGITFVFVTHDQEEALTMSDRIAVMNKG 207
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 7e-12
Identities = 59/221 (26%), Positives = 110/221 (49%), Gaps = 17/221 (7%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP---SGG 1324
V+ + Y + L I+ SI G ++G GSGKST+ ++ L+ P
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65
Query: 1325 RIIIDGIDISLLGLHDLRSRFGIIPQEP-VLFEG-TVRSNIDPIGQYSDEEIWKSLERCQ 1382
+I +DGI ++ + D+R + GI+ Q P F G TV ++ + E +++ R +
Sbjct: 66 KITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDV----AFGLEN--RAVPRPE 119
Query: 1383 LKDVVA---AKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
+ +V A LD + ++ N S GQ+Q + + ++ +++ +DE+T+ +D
Sbjct: 120 MIKIVRDVLADVGMLDYIDSEPA-NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAG 178
Query: 1440 DAEIQRIIRE--EFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
+I ++IR+ + T+ISI H I D+V+V+D G
Sbjct: 179 KEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDG 219
|
Length = 282 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 7e-12
Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 24/219 (10%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
DL Y + L I +I V+G G+GKSTL + F +++P+ G ++I G
Sbjct: 8 DLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGE 66
Query: 1332 DISLLGLHDLRSRFGIIPQEP--VLFEGTVRSNI--DPIGQYSDEE-----IWKSLERCQ 1382
I+ + ++R G++ Q P +F TV +I PI DEE + +L
Sbjct: 67 PITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLG 126
Query: 1383 LKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAE 1442
L+++ P L S G+++ + + V+ ++L +DE TA +D Q E
Sbjct: 127 LEELRDRVPHHL-----------SGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175
Query: 1443 IQRIIRE--EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
+ + + E T+I H++ V + D + V+D G
Sbjct: 176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKG 214
|
Length = 277 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 7e-12
Identities = 54/229 (23%), Positives = 94/229 (41%), Gaps = 50/229 (21%)
Query: 1274 QVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDI 1333
+ +R L ++ ++ G + ++G G+GKSTL + RL G+I + G
Sbjct: 6 GLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAG--- 62
Query: 1334 SLLGLHDLRS-------RFGIIPQEPVL-FEGTVRSNIDPIGQY-----------SDEEI 1374
HDLR R G++ Q+P L + +VR N+ +Y + I
Sbjct: 63 -----HDLRRAPRAALARLGVVFQQPTLDLDLSVRQNL----RYHAALHGLSRAEARARI 113
Query: 1375 WKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATAS 1434
+ L R L + K +L +G G R+ + + R +L LL +DE T
Sbjct: 114 AELLARLGLAERADDKVREL------NG-----GHRRRVEIARALLHRPALLLLDEPTVG 162
Query: 1435 VDSQTDAEIQRIIREEFAACTIISIA-----HRIPTVMDCDRVIVVDAG 1478
+D + A I +R A ++ H + + DR++V+ G
Sbjct: 163 LDPASRAAITAHVR---ALARDQGLSVLWATHLVDEIEADDRLVVLHRG 208
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 8e-12
Identities = 47/212 (22%), Positives = 90/212 (42%), Gaps = 40/212 (18%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------TT 710
L ++L + G + ++G G+GK++L+ + SG +++ G
Sbjct: 16 LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRI 74
Query: 711 AYVAQT-SWIQNGTIEE-----NILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIG 764
Y+ Q N T+ E L G+P K RV + + + + + + +IG
Sbjct: 75 GYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKA----RVDEVLELVNLGDRAKK-KIG 129
Query: 765 ERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDI-----FKECVRGALKG 819
LSGG ++R+ +A+A+ D I ++D + G D F+ + +
Sbjct: 130 S----LSGGMRRRVGIAQALVGDPSILIVD------EPTAGLDPEERIRFRNLLSELGED 179
Query: 820 KTIILVTHQV-DFLHNVDLILVMREGMIVQSG 850
+ +IL TH V D + + V+ +G +V G
Sbjct: 180 RIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 8e-12
Identities = 61/213 (28%), Positives = 99/213 (46%), Gaps = 33/213 (15%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG---LHD 1340
VL I L I+ GE + + G +GSGK+TL+ + L G + + G ++ L
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 1341 LRSRFGIIPQEPVLFEG-TVRSNI----DPIGQYS-DEEIWKS---LERCQLKDVVAAKP 1391
LR G I Q L T R N+ + S E ++ LE L D + P
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP 139
Query: 1392 DKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI----QRII 1447
L SG GQ+Q + + R ++ +L+ DE TA++DS++ ++ Q++
Sbjct: 140 HNL------SG-----GQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLA 188
Query: 1448 REEFAACTIISIAH--RIPTVMDCDRVIVVDAG 1478
RE+ CTI+ + H RI V DR++ ++ G
Sbjct: 189 REQ--GCTILIVTHDNRILDV--ADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (164), Expect = 8e-12
Identities = 63/230 (27%), Positives = 109/230 (47%), Gaps = 31/230 (13%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKV---------------- 706
L +I+LE+KKG TA++G GSGKS+LL + G + GKV V
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 707 ----CGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTE 762
G ++ + T+ +++ FG P N E EK LEM+ G E
Sbjct: 82 VRKKVGVVFQFPESQLFEE-TVLKDVAFG-PQNFGIPKEKAEKIAAEK-LEMV--GLADE 136
Query: 763 IGERG-INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKT 821
E+ LSGGQ +R+ +A + + ++ +LD+ + +D ++ + G+T
Sbjct: 137 FWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQT 196
Query: 822 IILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHE 870
++LVTH +D + + D + ++ +G I+ G + + +DF + AHE
Sbjct: 197 VVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE-VDF---LKAHE 242
|
Length = 288 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (166), Expect = 8e-12
Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 24/203 (11%)
Query: 1277 YRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI----D 1332
Y + T VL + L I + +G +G GKST ++ +L + +I+G +
Sbjct: 90 YMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLND------LIEGTSHEGE 143
Query: 1333 ISLLGLH---------DLRSRFGIIPQEPVLFEGTVRSNI--DPIGQ-YSDEEIWKSLER 1380
I LG + +LR+R G++ Q+P FE ++ N+ P +D +I + +
Sbjct: 144 IYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVE 203
Query: 1381 CQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTD 1440
LK AA D++ + +G+ S GQ+Q LC+ R + +L MDE T+++D
Sbjct: 204 KSLKS--AALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIAT 261
Query: 1441 AEIQRIIREEFAACTIISIAHRI 1463
A+I+ +I E +II + H +
Sbjct: 262 AKIEELILELKKKYSIIIVTHSM 284
|
Length = 329 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 8e-12
Identities = 64/249 (25%), Positives = 105/249 (42%), Gaps = 43/249 (17%)
Query: 1257 LPPPNWPAHGNVDLIDLQVRYRSNTPL-------------VLKGITLSIHGGEKIGVVGR 1303
L P G + S + V+ G++ ++ GE G++G
Sbjct: 16 LSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGP 75
Query: 1304 TGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVL-FEGTVRSN 1362
G+GKST+ ++ + P G+I + G+ + R+R G++PQ L E TVR N
Sbjct: 76 NGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIGVVPQFDNLDLEFTVREN 134
Query: 1363 IDPIGQY-------SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCL 1415
+ G+Y + I LE +L+ K D+ V+D S G ++ L L
Sbjct: 135 LLVFGRYFGMSTREIEAVIPSLLEFARLE-------SKADARVSD----LSGGMKRRLTL 183
Query: 1416 GRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA-ACTIISIAHRIPTVMD-----C 1469
R ++ +LL +DE T +D I +R A TI+ H M+ C
Sbjct: 184 ARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH----FMEEAERLC 239
Query: 1470 DRVIVVDAG 1478
DR+ V++AG
Sbjct: 240 DRLCVLEAG 248
|
Length = 340 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 9e-12
Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 30/215 (13%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------------ 710
L ++L ++ G++ A++G G+GKS+L+ + G SG++ + G
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83
Query: 711 --AYVAQ-TSWIQNGTIEENILFG-LPMNRAKYGEVVRVCCLEKDLEMM-EYGDQTEIGE 765
A V Q S + N ++ ENI G P R G + R + E++ G +
Sbjct: 84 GIATVHQELSLVPNLSVAENIFLGREPTRRF--GLIDRKAMRRRARELLARLGLDIDPDT 141
Query: 766 RGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK--GKTII 823
+LS Q+Q +++ARA+ D + +LD+ +A+ ++ + +R LK G II
Sbjct: 142 LVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKE-TERLFDLIR-RLKAQGVAII 199
Query: 824 LVTHQVDFLHNV----DLILVMREGMIVQSGRYNA 854
++H L V D I V+R+G +V + A
Sbjct: 200 YISH---RLDEVFEIADRITVLRDGRVVGTRPTAA 231
|
Length = 500 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 9e-12
Identities = 50/198 (25%), Positives = 93/198 (46%), Gaps = 28/198 (14%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL--------VEPSGGRIIIDGIDI-- 1333
+K +T+ I + ++G +G GK+TL++ R+ VE G+I G DI
Sbjct: 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE---GKIYFKGQDIYD 74
Query: 1334 SLLGLHDLRSRFGIIPQEPVLFEGTVRSN------IDPIGQYS--DEEIWKSLERCQLKD 1385
L + + R + G++ Q+P F ++ N I + D + +SL++ L D
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWD 134
Query: 1386 VVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQR 1445
V ++ +K G S GQ+Q LC+ R + ++ +DE T+++D I++
Sbjct: 135 EVKSELNK-------PGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEK 187
Query: 1446 IIREEFAACTIISIAHRI 1463
++ E TI+ + H I
Sbjct: 188 LLEELSENYTIVIVTHNI 205
|
Length = 250 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 9e-12
Identities = 62/233 (26%), Positives = 107/233 (45%), Gaps = 42/233 (18%)
Query: 628 LVNESVERVEGCDDNIAVEVRDGVFS------WDDENGEECLKNINLEIKKGDLTAIVGT 681
+V V ++ I + VF W E+ LKNINL+I + ++TAI+G
Sbjct: 1 MVATVVNVQVKNEEKIETAPKKVVFDTQNLNLWYGED--HALKNINLDIHENEVTAIIGP 58
Query: 682 VGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEE--------------- 726
G GKS+ + + L M ++ VK G Y Q + ++ ++EE
Sbjct: 59 SGCGKSTYIKT-LNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPF 117
Query: 727 ------NILFGLPM----NRAKYGEVVRVCCLEKDLEMMEYGDQTE--IGERGINLSGGQ 774
N+ +G + ++ E+V EK L D+ + + + LSGGQ
Sbjct: 118 PKSIYDNVTYGPKIHGIKDKKTLDEIV-----EKSLRGAAIWDELKDRLHDNAYGLSGGQ 172
Query: 775 KQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTH 827
+QR+ +AR + + D+ L+D+ SA+D + + +E V+ K +II+VTH
Sbjct: 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKV-EELVQELKKDYSIIIVTH 224
|
Length = 271 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (170), Expect = 1e-11
Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 11/154 (7%)
Query: 713 VAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVC---CLEKDLEMMEYGDQTEIGERGIN 769
V+Q + N +I ENI FG A +V R C +++ +E + T +G G +
Sbjct: 1301 VSQEPMLFNMSIYENIKFG--KEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKS 1358
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKG-KTIILVTHQ 828
LSGGQKQRI +ARA+ ++ I LLD+ S++D+++ I K V K KTII + H+
Sbjct: 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
Query: 829 VDFLHNVDLILVM----REGMIVQS-GRYNALLN 857
+ + D I+V R G VQ+ G + LL+
Sbjct: 1419 IASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452
|
Length = 1466 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 30/200 (15%)
Query: 1295 GEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDG---IDISL-LGLHDLRSRFGIIPQ 1350
E G+ G +G+GKSTL++ L +P GG I+++G D + L + + G++ Q
Sbjct: 23 EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQ 82
Query: 1351 EPVLFEG-TVRSNI--------DPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADS 1401
+ LF VR N+ + + S +E+ L+ L ++ P +L S
Sbjct: 83 QYALFPHLNVRENLAFGLKRKRNREDRISVDEL---LDLLGLDHLLNRYPAQL------S 133
Query: 1402 GDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTI--ISI 1459
G G++Q + L R + LL +DE +++D ++ +++ I I +
Sbjct: 134 G-----GEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFV 188
Query: 1460 AHRIPTV-MDCDRVIVVDAG 1478
H + DR++V++ G
Sbjct: 189 THDLSEAEYLADRIVVMEDG 208
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 1e-11
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 27/209 (12%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG---TTAYVAQ--TS 717
L N++L + G + ++G G+GKS+L+ + SG V V G TT ++ +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 718 WIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKD------------LEMMEYGDQTEIGE 765
Q G I ++ F L +R +G V L+ L ++ GD+ +
Sbjct: 81 RRQIGMIFQH--FNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD--S 136
Query: 766 RGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDI---FKECVRGALKGKTI 822
NLSGGQKQR+ +ARA+ + + L D+ SA+D T I KE R G TI
Sbjct: 137 YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL--GLTI 194
Query: 823 ILVTHQVDFLHNV-DLILVMREGMIVQSG 850
+L+TH++D + + D + V+ G +++ G
Sbjct: 195 LLITHEMDVVKRICDCVAVISNGELIEQG 223
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-11
Identities = 67/214 (31%), Positives = 103/214 (48%), Gaps = 35/214 (16%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSG---GRIIIDGIDISLLGLHDL 1341
L ++L + GE + + G G+GKSTL++V V P G G II +G ++ + D
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHGTYEGEIIFEGEELQASNIRDT 79
Query: 1342 -RSRFGIIPQEPVLFEG-TVRSNI------DPIGQYSDEEIWKSLERCQ--LKDVVAAKP 1391
R+ II QE L + +V NI P G + ++ R Q L +
Sbjct: 80 ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY---LRAQKLLAQL----- 131
Query: 1392 DKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ---RIIR 1448
KLD A N +GQ+QL+ + + + K +RLL +DE TAS+ T++E IIR
Sbjct: 132 -KLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL---TESETAVLLDIIR 187
Query: 1449 EEFA---ACTIISIAHRIPTVMD-CDRVIVVDAG 1478
+ A AC I I+H++ V D + V+ G
Sbjct: 188 DLKAHGIAC--IYISHKLNEVKAISDTICVIRDG 219
|
Length = 506 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 1e-11
Identities = 50/189 (26%), Positives = 93/189 (49%), Gaps = 21/189 (11%)
Query: 1288 ITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL---VEPSGGRIIIDGIDISLLGLHDLRSR 1344
I + I + ++G +G GKST ++ F R+ + G + I+G D+ + LR
Sbjct: 21 INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80
Query: 1345 FGIIPQEPVLFEGTVRSNID-------PIGQYSDEE--IWKSLERCQLKDVVAAKPDKL- 1394
G++ Q+P +F ++ NI I +EE + L++ L + V DKL
Sbjct: 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK---DKLK 137
Query: 1395 DSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAAC 1454
+ +A SG GQ+Q LC+ R + +LL +DE T+++D + I+ +++E
Sbjct: 138 QNALALSG-----GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNL 192
Query: 1455 TIISIAHRI 1463
++I + H +
Sbjct: 193 SMIMVTHNM 201
|
Length = 246 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 1e-11
Identities = 41/191 (21%), Positives = 79/191 (41%), Gaps = 48/191 (25%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
+L + L+ ++ I G+++ + G +G+GKS+L + L GRI +
Sbjct: 5 NLSLATPDGRVLLKD-LSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPE- 62
Query: 1332 DISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKP 1391
+PQ P L GT L++ + P
Sbjct: 63 ----------GEDLLFLPQRPYLPLGT------------------------LREQLI-YP 87
Query: 1392 DKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF 1451
D S G++Q L R++L + +F+DEAT+++D +++ + ++++E
Sbjct: 88 ---------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG 138
Query: 1452 AACTIISIAHR 1462
T+IS+ HR
Sbjct: 139 I--TVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 1e-11
Identities = 55/219 (25%), Positives = 102/219 (46%), Gaps = 44/219 (20%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------TTAYVAQT 716
L +++L ++ G++ AI+G G+GKS+LL ++ GE+ SG+V++ G + A +A+
Sbjct: 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARR 77
Query: 717 SWI--QNGTI------EENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGI 768
+ Q+ ++ EE + G + E + + D + R
Sbjct: 78 RAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALV-----AAALAQVDLAHLAGRDY 132
Query: 769 -NLSGGQKQRIQLARAVYQ------DCDIYLLDDVFSAVD---AHTGSDIFKECVRGALK 818
LSGG++QR+QLAR + Q LLD+ SA+D H + ++
Sbjct: 133 PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER-- 190
Query: 819 GKTIILVTHQVDFLHNVDL-------ILVMREGMIVQSG 850
G +I+V LH+++L I+++ +G +V G
Sbjct: 191 GLAVIVV------LHDLNLAARYADRIVLLHQGRLVADG 223
|
Length = 258 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 1e-11
Identities = 57/216 (26%), Positives = 102/216 (47%), Gaps = 34/216 (15%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL--------VEPSG 1323
DL V Y + LKG+++ I ++G +G GKST ++ R+ ++
Sbjct: 50 DLDVYYGDDH--ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARID--- 104
Query: 1324 GRIIIDGIDISLLG--LHDLRSRFGIIPQEPVLFEGTVRSNID--P-------------- 1365
G + +DG DI G L +LR R G++ Q P F ++R NI P
Sbjct: 105 GSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARL 164
Query: 1366 IGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRL 1425
+G+ + + +ER L+ AA D+++ + D+ S GQ+Q LC+ R + +
Sbjct: 165 LGRDDKDAEDELVERS-LRQ--AALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEV 221
Query: 1426 LFMDEATASVDSQTDAEIQRIIREEFAACTIISIAH 1461
+ MDE +++D ++I+ +I E T++ + H
Sbjct: 222 ILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTH 257
|
Length = 305 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 1e-11
Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 36/193 (18%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW---- 718
LKNINL I + ++TAI+G G GKS+ + + L M ++ VK+ G Y
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKT-LNLMIQMVPNVKLTGEMNYNGSNILKGKV 86
Query: 719 ------------IQNG-----TIEENILFGLPM----NRAKYGEVVRVCCLEKDLEMMEY 757
Q G +I +N+ +G + N+ K E+V EK L+ +
Sbjct: 87 DLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIV-----EKSLKDVAL 141
Query: 758 GDQTE--IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRG 815
D+ + + + ++LSGGQ+QR+ +ARA+ + D+ L+D+ SA+D + I E +
Sbjct: 142 WDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKI--EELIL 199
Query: 816 ALKGK-TIILVTH 827
LK K TI++VTH
Sbjct: 200 KLKEKYTIVIVTH 212
|
Length = 259 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 1e-11
Identities = 59/233 (25%), Positives = 102/233 (43%), Gaps = 30/233 (12%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLL----------------ASILGEMHKIS 701
N + L ++L I G++ A++G GSGKS+LL +LG +
Sbjct: 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE 74
Query: 702 GKV-----KVCGTTAYVAQT-SWIQNGTIEENILFG----LPMNRAKYGEVVRVCCLEKD 751
G++ K T Y+ Q + + ++ EN+L G P R + R
Sbjct: 75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRAL 134
Query: 752 LEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKE 811
+ G +R LSGGQ+QR+ +ARA+ Q + L D+ +++D + + I +
Sbjct: 135 QALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPES-ARIVMD 193
Query: 812 CVR--GALKGKTIILVTHQVDF-LHNVDLILVMREGMIVQSGRYNALLNSGMD 861
+R G T+++ HQVD+ L + I+ +R+G + G N D
Sbjct: 194 TLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNERFD 246
|
Length = 262 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 51/217 (23%), Positives = 105/217 (48%), Gaps = 28/217 (12%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------- 709
+ +++LE+ G++ ++G G+GK++ I+G + SGK+ +
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79
Query: 710 -TAYVAQTSWIQNG-TIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIG 764
Y+ Q + I T+E+NI+ L + + K + L ++ + D
Sbjct: 80 GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDS---- 135
Query: 765 ERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTI-I 823
+ +LSGG+++R+++ARA+ + LLD+ F+ VD DI + ++ LK + I +
Sbjct: 136 -KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDI-QRIIK-HLKDRGIGV 192
Query: 824 LVT-HQV-DFLHNVDLILVMREGMIVQSGRYNALLNS 858
L+T H V + L D ++ +G ++ G ++N+
Sbjct: 193 LITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229
|
Length = 243 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 38/221 (17%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------- 709
+ ++L +K+G++ ++G G+GK++ I+G + SGK+ + G
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75
Query: 710 -TAYVAQTSWI-QNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMM--EYGDQTEIGE 765
Y+ Q + I + T+EENIL L + E E+ LE + E+
Sbjct: 76 GIGYLPQEASIFRKLTVEENILAVLEIRGLSKKE------REEKLEELLEEFHITHLRKS 129
Query: 766 RGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTI-IL 824
+ +LSGG+++R+++ARA+ + LLD+ F+ VD DI ++ ++ LK + I +L
Sbjct: 130 KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI-QKIIK-ILKDRGIGVL 187
Query: 825 VTHQVDFLHNVDLIL-------VMREGMIVQSGRYNALLNS 858
+T D HNV L ++ EG ++ G + +
Sbjct: 188 IT---D--HNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-11
Identities = 33/125 (26%), Positives = 47/125 (37%), Gaps = 25/125 (20%)
Query: 687 SSLLASILGEMHKISGKVKVCGT--------------TAYVAQTSWI-QNGTIEENILFG 731
S+LL I G + SG + + G V Q + T+ EN+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 732 LPMNRAKYGEVVRVCCLEKDLEMMEYG-DQTEIGERGINLSGGQKQRIQLARAVYQDCDI 790
L A + G E LSGGQKQR+ +ARA+ + +
Sbjct: 61 LRDKEADA-RAEEA--------LERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKL 111
Query: 791 YLLDD 795
LLD+
Sbjct: 112 LLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-11
Identities = 54/218 (24%), Positives = 101/218 (46%), Gaps = 23/218 (10%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
DL RY+ T LKG++LSI G K ++G G+GKSTL+ + P GR+ + G
Sbjct: 9 DLHFRYKDGTK-ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGR 67
Query: 1332 DISLLGLHDLRSRFGIIPQEP--VLFEGTVRSNI--DPIGQ-YSDEEIWK----SLERCQ 1382
+++ +RS+ G++ Q+P +F TV ++ P+ +E+ + +L+ +
Sbjct: 68 EVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVR 127
Query: 1383 LKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAE 1442
+ D P L S GQ++ + + V+ ++ +DE A +D +
Sbjct: 128 MWDFRDKPPYHL-----------SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET 176
Query: 1443 IQRIIREEFAACTIISIA-HRIPTVMD-CDRVIVVDAG 1478
+ I+ + +A H + + D+VIV+ G
Sbjct: 177 LMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEG 214
|
Length = 274 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-11
Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 18/166 (10%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
L+ ++L+I GE + V+G +G GK+TL+ + V PS G I ++G I G +
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----A 74
Query: 1344 RFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSG 1402
G++ Q L V N+ Q I K+ R +A + L L +
Sbjct: 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRG--IEKAQRR-----EIAHQMLALVGL-EGAE 126
Query: 1403 DNW----SVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 1444
+ S G RQ + + R + +LL +DE ++D+ T ++Q
Sbjct: 127 HKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQ 172
|
Length = 259 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 55/216 (25%), Positives = 102/216 (47%), Gaps = 29/216 (13%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------TTAY 712
G L ++L+++ G++ AI+G G+GKS+LL ++ GE+ SG+V + G
Sbjct: 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEE 72
Query: 713 VAQTSWI--QNG------TIEENILFGLPMNR--AKYGEVVRVCCLEKDLEMMEYGDQTE 762
+A+ + QN T++E + G +R + E R+ + + D +
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAA-----QALAATDLSG 127
Query: 763 IGERGIN-LSGGQKQRIQLARAVYQ------DCDIYLLDDVFSAVDAHTGSDIFKECVRG 815
+ R LSGG++QR+QLAR + Q LD+ SA+D + +
Sbjct: 128 LAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQL 187
Query: 816 ALKGKTIILVTHQVDFL-HNVDLILVMREGMIVQSG 850
A +G ++ V H ++ D I+++ +G ++ SG
Sbjct: 188 AREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASG 223
|
Length = 259 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (162), Expect = 2e-11
Identities = 63/245 (25%), Positives = 113/245 (46%), Gaps = 30/245 (12%)
Query: 637 EGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLAS---- 692
E + E+R+ F W + L ++NL+IK+ +TA +G G GKS+ L +
Sbjct: 73 EDFNHANVFEIRNFNF-WYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQL 131
Query: 693 ---ILGEMHKISGKVKVCGTTAYVAQTSWIQNGT---------------IEENILFGLPM 734
I G H+ G++ GT + S ++ T I +N+ +G P
Sbjct: 132 NDLIEGTSHE--GEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYG-PR 188
Query: 735 NRAKYGEVVRVCCLEKDLEMMEYGDQT--EIGERGINLSGGQKQRIQLARAVYQDCDIYL 792
N + +EK L+ D+ ++ + G LSGGQ+QR+ +ARA+ + ++ L
Sbjct: 189 NNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLL 248
Query: 793 LDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGR 851
+D+ SA+D + I +E + K +II+VTH + + D + +G I ++G
Sbjct: 249 MDEPTSALDPIATAKI-EELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307
Query: 852 YNALL 856
+
Sbjct: 308 TKTIF 312
|
Length = 329 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 34/220 (15%)
Query: 662 CLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKIS-GKVKVCGTTAYVAQTSWIQ 720
L +N + G+ A++G GSGKS++L IL + I G+++V G Y +
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTIL-RILMTLEPIDEGQIQVEGEQLYHMPG---R 70
Query: 721 NGTIEENILFGLPMNRAKYGEVVRVCCL-----------------------EKDLEMMEY 757
NG + L R K G V + L E + ME
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMEL 130
Query: 758 GDQTEIGERG----INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECV 813
D + ++ LSGGQ+QR+ +ARA+ + L D+V SA+D ++
Sbjct: 131 LDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIR 190
Query: 814 RGALKGK-TIILVTHQVDFLHNV-DLILVMREGMIVQSGR 851
R A + T++LVTH++ F D + +G IV+ G+
Sbjct: 191 RLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 2e-11
Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 33/222 (14%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------- 710
G L N + +TA+ G GSGK+SL+ I G G++++ G
Sbjct: 10 LGNFALD-ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKG 68
Query: 711 ----------AYVAQTSWI-QNGTIEENILFGL-PMNRAKYGEVVRVCCLEKDLEMMEYG 758
YV Q + + + T+ N+ +G+ RA++ ++V + +E L+
Sbjct: 69 IFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-- 126
Query: 759 DQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK 818
LSGG+KQR+ + RA+ ++ L+D+ +++D +I R +
Sbjct: 127 ---------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDE 177
Query: 819 GKT-IILVTHQVD-FLHNVDLILVMREGMIVQSGRYNALLNS 858
I+ V+H +D L D ++V+ G + SG + S
Sbjct: 178 INIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219
|
Length = 352 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 60/221 (27%), Positives = 107/221 (48%), Gaps = 29/221 (13%)
Query: 1273 LQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGID 1332
L V Y + +L ++LS+ G+ ++G G GKSTL++ F RL+ P G + +
Sbjct: 8 LTVGYGTKR--ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKP 65
Query: 1333 ISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNI----DPI----GQYSDEE---IWKSLER 1380
IS+L L R ++PQ + EG TVR + P G+ S E+ + +++E+
Sbjct: 66 ISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQ 125
Query: 1381 CQLKDVVAAKPDKLDSLVAD-SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
++ + D + D SG GQRQ L V+ + + ++ +DE T +D
Sbjct: 126 TRINHLA-------DRRLTDLSG-----GQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH 173
Query: 1440 DAEIQRIIREEFAAC-TIISIAHRIPTVMD-CDRVIVVDAG 1478
E+ R++RE T++++ H + CD ++V+ G
Sbjct: 174 QVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANG 214
|
Length = 255 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 3e-11
Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 27/213 (12%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD--- 1340
++ ++ ++ GE +G+ G G+G++ L + F S G I++DG + + D
Sbjct: 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIK 333
Query: 1341 --------LRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAA--- 1389
R G++ + E +++ + I + ER + +
Sbjct: 334 AGIAYVPEDRKSEGLVLDMSIA-ENITLASLRRFSRRG--LIDRRKERALAERYIRRLRI 390
Query: 1390 KPDKLDSLVAD-SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR 1448
K + + SG N Q Q + L R + ++L +DE T +D AEI R+IR
Sbjct: 391 KTPSPEQPIGTLSGGN----Q-QKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIR 445
Query: 1449 EEFAA--CTIISIAHRIPTVMD-CDRVIVVDAG 1478
E AA I+ I+ +P ++ DR++V+ G
Sbjct: 446 -ELAAEGKAILMISSELPELLGLSDRILVMREG 477
|
Length = 500 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 3e-11
Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 24/208 (11%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------- 709
NG L IN+ I G+ +VG G+GKS+LL I E SG ++V G
Sbjct: 12 NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGR 71
Query: 710 -TAYVAQT--------SWIQNGTIEENILFGLPMNRAKYGEVV-RVCCLEKDLEMMEYGD 759
Y+ + + + + EN+ F L + E+ RV LE++ G
Sbjct: 72 AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAA---LELV--GL 126
Query: 760 QTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKG 819
+ LSGG++QR+ +ARA+ I + D+ +D T +I + G
Sbjct: 127 SHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAG 186
Query: 820 KTIILVTHQVDFLHNVD-LILVMREGMI 846
T+++ TH + + ++ + G +
Sbjct: 187 TTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 28/200 (14%)
Query: 1283 LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDG--IDISLLG--L 1338
++ G++ ++ GE + + G GSGK+TL+++ L+ P+ G I +DG ID +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 1339 HDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLD--- 1395
H L R + +P L TV N+ E W + + D+ AA L+
Sbjct: 76 HYLGHRNAM---KPAL---TVAENL---------EFWAAFLGGEELDIAAA----LEAVG 116
Query: 1396 -SLVAD-SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAA 1453
+ +A S GQ++ + L R+++ + + +DE TA++D+ A +IR A
Sbjct: 117 LAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ 176
Query: 1454 CTIISIAHRIPTVMDCDRVI 1473
I+ A IP + R +
Sbjct: 177 GGIVIAATHIPLGLPGAREL 196
|
Length = 207 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 3e-11
Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 44/221 (19%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASI-LGEMHKISGKVKVCGTTAYVAQTSWI 719
+ L +I L+ +G+ ++G G+GKSSLL + L EM + SG + + G ++T
Sbjct: 16 QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGNHFDFSKTPSD 74
Query: 720 QNG--------------------TIEENIL------FGLPMNRAKYGEVVRVCCLEKDLE 753
+ T++EN++ GL ++A R L K L
Sbjct: 75 KAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL----ARAEKLLKRLR 130
Query: 754 MMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS---DIFK 810
+ Y D+ + +LSGGQ+QR+ +ARA+ + + L D+ +A+D + I K
Sbjct: 131 LKPYADRYPL-----HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIK 185
Query: 811 ECVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
E A G T ++VTH+V+ ++ M G IV+ G
Sbjct: 186 EL---AETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 3e-11
Identities = 61/203 (30%), Positives = 101/203 (49%), Gaps = 20/203 (9%)
Query: 664 KNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-----------TAY 712
K+INL+I +G+ VG G GKS+LL I G SG + +
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79
Query: 713 VAQT-SWIQNGTIEENILFGLPMNRAKYGEV-VRVCCLEKDLEMMEYGDQTEIGERGINL 770
V Q+ + + ++ EN+ FGL + AK E+ RV + E+++ + + L
Sbjct: 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRV---NQVAEVLQLAHLLD--RKPKAL 134
Query: 771 SGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTH-Q 828
SGGQ+QR+ + R + + ++LLD+ S +DA + E R + G+T+I VTH Q
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194
Query: 829 VDFLHNVDLILVMREGMIVQSGR 851
V+ + D I+V+ G + Q G+
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGK 217
|
Length = 369 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 3e-11
Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 29/210 (13%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT---TAYVAQTS 717
+ L N++ I +G++ AIVG+ GSGKS+LL + G SG V G A +
Sbjct: 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82
Query: 718 WIQNG---------------TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMME-YGDQT 761
++N T EN+ L + + K E+ + LEM+ G +
Sbjct: 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN-----SRALEMLAAVGLEH 137
Query: 762 EIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL---K 818
R LSGG++QR+ +ARA+ + + L D+ +DA IF+ + G L +
Sbjct: 138 RANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ--LLGELNRLQ 195
Query: 819 GKTIILVTHQVDFLHNVDLILVMREGMIVQ 848
G ++VTH + + L MR+G +
Sbjct: 196 GTAFLVVTHDLQLAKRMSRQLEMRDGRLTA 225
|
Length = 233 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 3e-11
Identities = 59/214 (27%), Positives = 102/214 (47%), Gaps = 29/214 (13%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL--VEPSG-- 1323
V L L V + N +K +++ ++G +G GKST+++ R+ + PS
Sbjct: 5 VKLEQLNVHFGKNH--AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARV 62
Query: 1324 -GRIIIDGIDISLLGLH--DLRSRFGIIPQEPVLFEG-TVRSNIDPIGQY---------- 1369
G+I++D DI G+ +R R G++ Q+P F ++ N+ I Y
Sbjct: 63 TGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNV--IAGYKLNGRVNRSE 120
Query: 1370 SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMD 1429
+DE + SL+R L D V D+L S + S GQ+Q LC+ R + ++ MD
Sbjct: 121 ADEIVESSLKRVALWDEVK---DRLKS----NAMELSGGQQQRLCIARTIAVKPEVILMD 173
Query: 1430 EATASVDSQTDAEIQRIIREEFAACTIISIAHRI 1463
E +++D + +I+ +I E TII + H +
Sbjct: 174 EPASALDPISTLKIEELIEELKEKYTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 32/218 (14%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISG------KVKVCGTTAYV--- 713
L NI+L I +G++ I+G GSGKS+LL I ++ +I+ +KV
Sbjct: 17 LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCI-NKLEEITSGDLIVDGLKVNDPKVDERLI 75
Query: 714 --------AQTSWIQNGTIEENILFG-LPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIG 764
Q + T EN++FG L + A E + E + +
Sbjct: 76 RQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQA--------RELLAKVGLA 127
Query: 765 ERG----INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGK 820
ER LSGGQ+QR+ +ARA+ + L D+ SA+D ++ K A +G
Sbjct: 128 ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGM 187
Query: 821 TIILVTHQVDFLHNVDLILV-MREGMIVQSGRYNALLN 857
T+++VTH++ F V L+ + +G I + G L+
Sbjct: 188 TMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225
|
Length = 240 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 4e-11
Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 30/211 (14%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
VL I+L I G+ + ++G +GSGK+TL+++ L + G I G D+S LH
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS--RLHARDR 74
Query: 1344 RFGIIPQEPVLFEG-TVRSNID-----------PIGQYSDEEIWKSLERCQLKDVVAAKP 1391
+ G + Q LF TV NI P ++ + LE QL + P
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP 134
Query: 1392 DKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR--- 1448
+L SG GQ+Q + L R + ++L +DE ++D+Q E++R +R
Sbjct: 135 AQL------SG-----GQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLH 183
Query: 1449 EEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
EE T + + H M+ DRV+V+ G
Sbjct: 184 EELKF-TSVFVTHDQEEAMEVADRVVVMSQG 213
|
Length = 353 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (157), Expect = 4e-11
Identities = 56/210 (26%), Positives = 103/210 (49%), Gaps = 29/210 (13%)
Query: 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH---- 698
+ ++ RD F + D + LK I++EI++ + A +G G GKS+ L + M+
Sbjct: 2 VKIDARDVNFWYGDFHA---LKGISMEIEEKSVVAFIGPSGCGKSTFL-RLFNRMNDLIP 57
Query: 699 --KISGKVKVCGTTAY---------------VAQTSWIQNGTIEENILFGLPMNRAKYGE 741
++ G++++ G Y V Q +I EN+ +GL +N K
Sbjct: 58 ATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNA 117
Query: 742 VVRVCCLEKDLEMMEYGDQTE--IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSA 799
+R +E+ L+ D+ + + E LSGGQ+QR+ +ARA+ + L+D+ SA
Sbjct: 118 FIRQR-VEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASA 176
Query: 800 VDAHTGSDIFKECVRGALKGKTIILVTHQV 829
+D + + + +E + K TI++VTH +
Sbjct: 177 LDPISTAKV-EELIHELKKDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 4e-11
Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 26/206 (12%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL-----VEPSGGRI 1326
DL V Y +KGI + + ++G +GSGKST ++ R+ + G+I
Sbjct: 25 DLHVYYGKKE--AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI 82
Query: 1327 IIDGIDISL--LGLHDLRSRFGIIPQEPVLFEGTVRSNIDPI--------GQYSDEEIWK 1376
+ GIDI+ + ++++R G++ Q P F ++ NI + DE +
Sbjct: 83 LYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVET 142
Query: 1377 SLERCQLKDVVAAKPDKLD-SLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASV 1435
SL++ L D V D L S + SG GQ+Q LC+ R + +L MDE +++
Sbjct: 143 SLKQAALWDQVK---DDLHKSALTLSG-----GQQQRLCIARAIAVKPDILLMDEPASAL 194
Query: 1436 DSQTDAEIQRIIREEFAACTIISIAH 1461
D + +++ + E TII + H
Sbjct: 195 DPISTMQLEETMFELKKNYTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 5e-11
Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 38/216 (17%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------T 709
L ++LEI +GD ++G+ G+GKS+LL +I G++ SG++ + G
Sbjct: 22 LNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL 81
Query: 710 TAYVAQTSWI---QNGTIEENIL----------FGLPMN-RAKYGEVVRVCCLEKDLE-M 754
A V Q TIEEN+ +N R + R+ L LE
Sbjct: 82 LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENR 141
Query: 755 MEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR 814
+ IG LSGGQ+Q + L A I LLD+ +A+D T + + +
Sbjct: 142 LS----DRIGL----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAK 193
Query: 815 GALKGK-TIILVTHQV-DFLHNVDLILVMREGMIVQ 848
+ K T ++VTH + D L + ++++ G IV
Sbjct: 194 IVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229
|
Length = 263 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 5e-11
Identities = 53/201 (26%), Positives = 96/201 (47%), Gaps = 35/201 (17%)
Query: 1271 IDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDG 1330
DL RY + VLKG++L + G+ I ++G +GSGKST ++ L +PS G I ++G
Sbjct: 10 EDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNG 67
Query: 1331 IDISL----LG---------LHDLRSRFGIIPQEPVLF------EGTVRSNIDPIGQYSD 1371
+I L G L LR+R G++ Q L+ E + + + +G
Sbjct: 68 EEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKA 127
Query: 1372 EEIWKS---LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFM 1428
E I ++ L + + + A P L SG GQ+Q + + R + ++
Sbjct: 128 EAIERAEKYLAKVGIAEKADAYPAHL------SG-----GQQQRVAIARALAMEPEVMLF 176
Query: 1429 DEATASVDSQTDAEIQRIIRE 1449
DE T+++D + E+ +++++
Sbjct: 177 DEPTSALDPELVGEVLKVMQD 197
|
Length = 256 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 5e-11
Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 35/204 (17%)
Query: 1285 LKGITLSIHGG-----EKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLH 1339
L TL + GG E IG++G G GK+T I++ +++P G I I+ +S
Sbjct: 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYK--- 66
Query: 1340 DLRSRFGIIPQE-PVLFEGTVR---SNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLD 1395
PQ +EGTVR S+I Y+ +K+ ++ AKP +++
Sbjct: 67 ---------PQYIKADYEGTVRDLLSSITK-DFYTHPY-FKT-------EI--AKPLQIE 106
Query: 1396 SLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE--EFAA 1453
++ S G+ Q + + + K + + +DE +A +D + ++IR E
Sbjct: 107 QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNE 166
Query: 1454 CTIISIAHRIPTV-MDCDRVIVVD 1476
T + H I + DR+IV +
Sbjct: 167 KTAFVVEHDIIMIDYLADRLIVFE 190
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 5e-11
Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 30/196 (15%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFR---LVEPSG--GRIIIDGIDISLLGLH 1339
L IT+SI ++G +G GKSTL++ F R L+ G I+ +G +I G
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 1340 --DLRSRFGIIPQEPVLFEGTVRSNIDPIGQYS------------DEEIWKSLERCQLKD 1385
LR + G++ Q P F ++ N+ Y D + KSL+ L D
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENV----AYGPRIHGEKNKKTLDTIVEKSLKGAALWD 137
Query: 1386 VVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQR 1445
V D+L DS + S GQ+Q LC+ R + + ++ MDE +++D A+I+
Sbjct: 138 EVK---DRLH----DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIED 190
Query: 1446 IIREEFAACTIISIAH 1461
+I + T+I + H
Sbjct: 191 LIEDLKKEYTVIIVTH 206
|
Length = 253 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 6e-11
Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 35/225 (15%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------------ 710
+ +++LE++ G++ ++G G+GK++L I G SG V G
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79
Query: 711 --AYVAQTSWI-QNGTIEENILFGLPMNRAKYGEVVRVCCLEKD-----------LEMME 756
A Q + + T+ EN+ G R ++ K+ LE +
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGA-HARLGLSGLLGRPRARKEEREARERARELLEFVG 138
Query: 757 YGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVF---SAVDAHTGSDIFKECV 813
G+ NLS GQ++R+++ARA+ + LLD+ + + +++ +E +
Sbjct: 139 LGEL--ADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRE-L 195
Query: 814 RGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLN 857
R G TI+L+ H + + + D I+V+ G ++ G + N
Sbjct: 196 R-DRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 6e-11
Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 25/224 (11%)
Query: 1272 DLQVRYRSNTP---LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIII 1328
++ RY+ TP L + +SI G + ++G TGSGKSTL+Q L++P+ G + I
Sbjct: 7 KVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI 66
Query: 1329 DGIDISL----LGLHDLRSRFGIIPQ--EPVLFEGTVRSNI--DPIGQYSDEEIWKSLER 1380
I+ L LR + GI+ Q E LFE TV +I P+ EE K R
Sbjct: 67 GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAR 126
Query: 1381 CQLKDVVAAKPDKLD-SLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
++ +V + L S SG GQ + + + V+ +L +DE TA +D +
Sbjct: 127 EMIE-LVGLPEELLARSPFELSG-----GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180
Query: 1440 DAEIQ----RIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
E+ ++ +E T + + H + D+++V+ G
Sbjct: 181 RKEMMEMFYKLHKE--KGLTTVLVTHSMEDAARYADQIVVMHKG 222
|
Length = 290 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 6e-11
Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 33/214 (15%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQT------ 716
L ++NL I+ G TA +G GSGKS+++ + G G V+V T + +
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRV-DDTLITSTSKNKDIK 81
Query: 717 --------------SWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTE 762
S + T+ +++ FG P N E EK L ++ G
Sbjct: 82 QIRKKVGLVFQFPESQLFEETVLKDVAFG-PQNFGVSQEEAEALAREK-LALV--GISES 137
Query: 763 IGERG-INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS---DIFKECVRGALK 818
+ E+ LSGGQ +R+ +A + + I +LD+ + +D +FK+ +
Sbjct: 138 LFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS--- 194
Query: 819 GKTIILVTHQVDFLHN-VDLILVMREGMIVQSGR 851
G TI+LVTH +D + N D + V+ +G +V SG+
Sbjct: 195 GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
Length = 280 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 6e-11
Identities = 45/184 (24%), Positives = 75/184 (40%), Gaps = 34/184 (18%)
Query: 665 NINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------AYVAQTSW 718
++ + G+L I G G+GK+SLL + G +G+V G Y +
Sbjct: 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78
Query: 719 I--QNG-----TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGI--- 768
+ Q G T EN+ F ++ + L + +G G
Sbjct: 79 LGHQPGIKTELTALENLRFYQRLHG-PGDDEALWEALAQ------------VGLAGFEDV 125
Query: 769 ---NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRG-ALKGKTIIL 824
LS GQ++R+ LAR +++LD+ F+A+D G + + A +G +IL
Sbjct: 126 PVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQ-GVARLEALLAQHAEQGGMVIL 184
Query: 825 VTHQ 828
THQ
Sbjct: 185 TTHQ 188
|
Length = 204 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 6e-11
Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 40/213 (18%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH------KISGKVKVCGTTAYVA 714
E L I+L+ ++ +LTA++G G GKS+ L L M+ KI+G++K G Y +
Sbjct: 18 EALHGISLDFEEKELTALIGPSGCGKSTFL-RCLNRMNDDIENIKITGEIKFEGQNIYGS 76
Query: 715 QTSWI----------QNGT-----IEENILFGLPMNRAKYGEVV--RVCCLEKDLEMMEY 757
+ + Q T + +N+ +GL + K E++ RV E+ L+
Sbjct: 77 KMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRV---EESLKQAAI 133
Query: 758 GDQTE--IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRG 815
+T+ + SGGQ+QRI +ARA+ + LLD+ SA+D + S+I +E +
Sbjct: 134 WKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEI-EETLME 192
Query: 816 ALKGKTIILVTH----------QVDFLHNVDLI 838
T I+VTH Q FL N DLI
Sbjct: 193 LKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLI 225
|
Length = 251 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 7e-11
Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 25/220 (11%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDG- 1330
DL+ Y T LKGI GE + ++G G+GKSTL F +++P+ G ++I G
Sbjct: 6 DLKYSYPDGT-EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGE 64
Query: 1331 -IDISLLGLHDLRSRFGIIPQEP--VLFEGTVRSNI--DPIG-QYSDEEIWK----SLER 1380
I L ++R GI+ Q P LF TV ++ P+ S EE+ K +L+
Sbjct: 65 PIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKA 124
Query: 1381 CQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTD 1440
++ P L SG GQ++ + + ++ ++ +DE T+ +D
Sbjct: 125 VGMEGFENKPPHHL------SG-----GQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173
Query: 1441 AEIQRIIRE-EFAACTIISIAHRIPTV-MDCDRVIVVDAG 1478
++I +++ + TII H + V + D+V V+ G
Sbjct: 174 SQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDG 213
|
Length = 275 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 7e-11
Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 32/224 (14%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+ L D++ Y P+ L++ GE + ++G +G+GKSTL+ + P+ G I+
Sbjct: 2 LALDDVRFSYGH-LPMRF---DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEIL 57
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNID----PIGQYSDEE---IWKSLE 1379
I+G+D + ++ QE LF TV NI P + + E+ + +
Sbjct: 58 INGVDHT--ASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAA 115
Query: 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
+ L + P +L SG GQRQ + L R +++ +L +DE +++D
Sbjct: 116 QVGLAGFLKRLPGEL------SG-----GQRQRVALARCLVREQPILLLDEPFSALDPAL 164
Query: 1440 DAE----IQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
AE + ++ E T++ + H DRV+ +D G
Sbjct: 165 RAEMLALVSQLCDER--KMTLLMVTHHPEDAARIADRVVFLDNG 206
|
Length = 231 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 7e-11
Identities = 54/203 (26%), Positives = 91/203 (44%), Gaps = 30/203 (14%)
Query: 1290 LSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIP 1349
L+ GE +VG +GSGKSTL+ + P GR++I+G+D++ D ++
Sbjct: 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPAD--RPVSMLF 76
Query: 1350 QEPVLFEG-TVRSNID-------PIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADS 1401
QE LF TV N+ + + I +L R L + P +L
Sbjct: 77 QENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGEL------- 129
Query: 1402 GDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISI 1459
S G+RQ + L RV+++ +L +DE A++D AE+ ++ + A T++ +
Sbjct: 130 ----SGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMV 185
Query: 1460 AHRIPTVMDC----DRVIVVDAG 1478
H D RV+ +D G
Sbjct: 186 TH---QPEDAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 7e-11
Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 30/194 (15%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH------KISGKVKVCGTTAY 712
+ L +I+LE ++ +TA++G G GKS+ L L M+ ++ G++ + G Y
Sbjct: 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRC-LNRMNDLIPGARVEGEILLDGENIY 76
Query: 713 ---------------VAQTSWIQNGTIEENILFGLPMNRAKYGEVV--RVCCLEKDLEMM 755
V Q +I EN+ +GL +N K + RV E+ L
Sbjct: 77 DPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERV---ERSLRHA 133
Query: 756 EYGDQTE--IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECV 813
D+ + + E + LSGGQ+QR+ +ARA+ + ++ L+D+ SA+D I +E +
Sbjct: 134 ALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKI-EELI 192
Query: 814 RGALKGKTIILVTH 827
TII+VTH
Sbjct: 193 HELKARYTIIIVTH 206
|
Length = 253 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 7e-11
Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 27/213 (12%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK---ISGKVKVCGT---------- 709
LKN++ K G+L A++G+ G+GK++L+ ++ K SG V + G
Sbjct: 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAI 100
Query: 710 TAYVAQTS-WIQNGTIEENILFG----LPMNRAKYGEVVRVCCLEKDLEMMEYGD--QTE 762
+AYV Q +I T+ E+++F +P K + RV ++ L+ + T
Sbjct: 101 SAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERV---DEVLQALGLRKCANTR 157
Query: 763 IGERGI--NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGK 820
IG G LSGG+++R+ A + D + D+ S +D+ + + A KGK
Sbjct: 158 IGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGK 217
Query: 821 TIILVTHQ--VDFLHNVDLILVMREGMIVQSGR 851
TII HQ + D I++M EG + G
Sbjct: 218 TIICTIHQPSSELFELFDKIILMAEGRVAYLGS 250
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 7e-11
Identities = 50/191 (26%), Positives = 91/191 (47%), Gaps = 15/191 (7%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL--VEPSG---GRIIIDGIDISLLGLH 1339
+K + L + G ++G +G GK+T ++ R+ + P GRI++DG DI +
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 1340 D--LRSRFGIIPQEPVLFE-----GTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPD 1392
+R R G++ Q+P F V + + G + + + ER L+ AA D
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAER-SLRG--AALWD 136
Query: 1393 KLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA 1452
++ + S GQ+Q LC+ R + +L MDE T+++D + A I+ ++ +
Sbjct: 137 EVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK 196
Query: 1453 ACTIISIAHRI 1463
TII + H +
Sbjct: 197 VTTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 8e-11
Identities = 59/263 (22%), Positives = 109/263 (41%), Gaps = 40/263 (15%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------T 709
L ++L +++G L +VG G+GK++LL +I G + +G V V G
Sbjct: 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR 78
Query: 710 TAYVAQ-TSWIQNGTIEENILFGLPMNRAKYGE-------VVRVCCLEKDLEMMEYGDQT 761
A V Q TS + + + G +R+++ V ME
Sbjct: 79 VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVE--------RAMERTGVA 130
Query: 762 EIGERGI-NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGK 820
+ +R + +LSGG++QR+ LARA+ Q + LLD+ +++D + + R GK
Sbjct: 131 QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGK 190
Query: 821 TIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNSGM---DFGALVAAHE---TSM 873
T + H +D D ++++ +G + +G +L + F A A T
Sbjct: 191 TAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAFDARTAVGTDPATGA 250
Query: 874 ELVEVGKTMPSGNSPKTPKSPQI 896
V +P + + ++
Sbjct: 251 PTV---TPLPDPDRTEAAADTRV 270
|
Length = 402 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 8e-11
Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 27/197 (13%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS-----------GGRIIIDGID 1332
VL +++ ++G TGSGK+T ++ R+ + GGR I + D
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 1333 ISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKP- 1391
+ + R R G++ Q P F ++ N+ + K + R + + V A+
Sbjct: 96 VL-----EFRRRVGMLFQRPNPFPMSIMDNV-----LAGVRAHKLVPRKEFRGVAQARLT 145
Query: 1392 -----DKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRI 1446
D + ++DS S GQ+QLLCL R + + +L +DE T+++D T +I+
Sbjct: 146 EVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEF 205
Query: 1447 IREEFAACTIISIAHRI 1463
IR T+I + H +
Sbjct: 206 IRSLADRLTVIIVTHNL 222
|
Length = 276 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 8e-11
Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 36/222 (16%)
Query: 1274 QVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDI 1333
V R LV+ G++ + GE G++G G+GK+T +++ L P G I + G +
Sbjct: 12 NVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPV 71
Query: 1334 SLLGLHDLRSRFGIIPQ----EPVLFEGTVRSNIDPIGQY-------SDEEIWKSLERCQ 1382
H R R G++PQ +P + TVR N+ G+Y + + LE +
Sbjct: 72 PSRARH-ARQRVGVVPQFDNLDP---DFTVRENLLVFGRYFGLSAAAARALVPPLLEFAK 127
Query: 1383 LKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAE 1442
L++ AK +L S G ++ L L R ++ +L +DE T +D Q
Sbjct: 128 LENKADAKVGEL-----------SGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHL 176
Query: 1443 IQRIIREEFAAC-TIISIAHRIPTVMD-----CDRVIVVDAG 1478
+ +R A TI+ H M+ CDR+ V++ G
Sbjct: 177 MWERLRSLLARGKTILLTTH----FMEEAERLCDRLCVIEEG 214
|
Length = 306 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 9e-11
Identities = 53/215 (24%), Positives = 96/215 (44%), Gaps = 45/215 (20%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSR 1344
LKG+ L+I GE I ++G +G GKSTL+ + L +P+ G +I++G I+ G
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG------- 53
Query: 1345 FGIIPQEPVLFEG-------TVRSNI-----DPIGQYSDEE----IWKSLERCQLKDVVA 1388
P V+F+ TVR NI + S E + + + L +
Sbjct: 54 ----PDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAAD 109
Query: 1389 AKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ---- 1444
+P +L S G +Q + + R + ++L +DE ++D+ T +Q
Sbjct: 110 KRPGQL-----------SGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELM 158
Query: 1445 RIIREEFAACTIISIAHRI-PTVMDCDRVIVVDAG 1478
+I E T++ + H + ++ DRV+++ G
Sbjct: 159 QIWEE--HRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 9e-11
Identities = 54/224 (24%), Positives = 106/224 (47%), Gaps = 25/224 (11%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
++ ++ Y L ++L I GE + + G +G+GK+TL+++ + + PS G++
Sbjct: 2 IEFHNVSKAYPGGVA-ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 1328 IDGIDISLLGLHD---LRSRFGIIPQE-PVLFEGTVRSNI----DPIGQYSDE---EIWK 1376
I G D++ L LR R G++ Q+ +L + TV N+ + G+ E +
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGA 120
Query: 1377 SLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVD 1436
+L + L+ A P++L S G++Q + + R ++ LL DE T ++D
Sbjct: 121 ALRQVGLEHKADAFPEQL-----------SGGEQQRVAIARAIVNSPPLLLADEPTGNLD 169
Query: 1437 SQTDAEIQRIIREEFAACTIISIAHRIPTVMD--CDRVIVVDAG 1478
I +++ T + +A +++D RVI++D G
Sbjct: 170 PDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 9e-11
Identities = 68/255 (26%), Positives = 117/255 (45%), Gaps = 53/255 (20%)
Query: 660 EECLKNINLEIKKGDLTAIVGTVGSGKSSLLA---SILGEMHKISGKVKVCG-------- 708
++ L +IN++I++ +TA++G G GKS+ L + ++ KI G V++ G
Sbjct: 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV 74
Query: 709 -----TTAYVAQTSWIQNGTIEENI-----LFGLPMNRAKYGEVVRVCCLEKDLEMMEYG 758
V Q + +I ENI L G+ N+ + +V V CL+K E
Sbjct: 75 VALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALV-VDCLQKVGLFEEVK 133
Query: 759 DQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK 818
D+ + + + LSGGQ+QR+ +ARA+ + LLD+ SA+D S + +E ++
Sbjct: 134 DK--LKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP-ISSGVIEELLKELSH 190
Query: 819 GKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVEV 878
++I+VTH M++G V Y A + G EL+E
Sbjct: 191 NLSMIMVTHN------------MQQGKRVAD--YTAFFHLG--------------ELIEF 222
Query: 879 GKTMPSGNSPKTPKS 893
G++ +PK K+
Sbjct: 223 GESKEFFENPKQEKT 237
|
Length = 246 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 9e-11
Identities = 65/216 (30%), Positives = 104/216 (48%), Gaps = 37/216 (17%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSG---GRIIIDGIDISLLGLHDL 1341
L GI L + GE +G+ G G+GKSTL+++ V P G G I G + + D
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHGTWDGEIYWSGSPLKASNIRDT 75
Query: 1342 -RSRFGIIPQEPVLF-EGTVRSNI-------DPIGQYSDEEIWKSLERCQ--LKDV-VAA 1389
R+ II QE L E +V NI P G+ + ++ R + L+++ + A
Sbjct: 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL---RAKNLLRELQLDA 132
Query: 1390 KPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ---RI 1446
V D G GQ+QL+ + + + K +RLL +DE ++S+ T+ E + I
Sbjct: 133 DNVTRP--VGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSL---TEKETEILLDI 183
Query: 1447 IREEFA---ACTIISIAHRIPTVMD-CDRVIVVDAG 1478
IR+ A AC + I+H++ V CD + V+ G
Sbjct: 184 IRDLKAHGVAC--VYISHKLNEVKAVCDTICVIRDG 217
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 61/231 (26%), Positives = 116/231 (50%), Gaps = 28/231 (12%)
Query: 640 DDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK 699
+D I ++V + +++ D G LK IN+ IKKG++TAI+G G+GKS+L ++ G +
Sbjct: 2 EDYI-LKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP 58
Query: 700 ISGKV---------------KVCGTTAYVAQTSWIQ--NGTIEENILFGLPMNRAKYGEV 742
SG++ K+ + V Q Q + ++ +++ FG +N +
Sbjct: 59 SSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFG-AVNLKLPEDE 117
Query: 743 VRVCCLEKDLEMMEYGDQTEIGERGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVD 801
VR ++ ++ + ++ + LS GQK+R+ +A + + + +LD+ + +D
Sbjct: 118 VR----KRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLD 173
Query: 802 AHTGSDIFKECVRGALK-GKTIILVTHQVDFLH-NVDLILVMREGMIVQSG 850
S+I K V + G TII+ TH +D + D + VM+EG ++ G
Sbjct: 174 PMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-10
Identities = 58/260 (22%), Positives = 113/260 (43%), Gaps = 36/260 (13%)
Query: 615 SLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGD 674
LA L M+ RE+V V + + +EV D S D G +K+++ E++ G+
Sbjct: 232 ELAEL---MVGREVV-LRVVKPPSTPGEVVLEVED--LSVKDRRGVTAVKDVSFEVRAGE 285
Query: 675 LTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTS--WIQNG---------- 722
+ I G G+G+S L+ +I G SG++ + G + + G
Sbjct: 286 IVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHG 345
Query: 723 -------TIEENILFGLPMNR--AKYGEVVRVCCLEKDLEMMEYGDQTEIGERGI----- 768
++ EN++ G + ++ G + R + E++E + ++
Sbjct: 346 HGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIE---EFDVRAPSPDAPAR 402
Query: 769 NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQ 828
+LSGG +Q++ LAR + + D+ + +D I + + GK ++L++
Sbjct: 403 SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISED 462
Query: 829 VDFLHNV-DLILVMREGMIV 847
+D + + D I V+ EG IV
Sbjct: 463 LDEILELSDRIAVIYEGRIV 482
|
Length = 501 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 1e-10
Identities = 65/215 (30%), Positives = 100/215 (46%), Gaps = 29/215 (13%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASI--LGEMH---KISGKVKVCGTTAYVAQ 715
E L +NLEI +TA++G GSGKS+LL L E++ ++SG+V + G +
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76
Query: 716 TSW--------------IQNGTIEENILFGLPMNR-----AKYGEVVRVCCLEKDLEMME 756
I N +I EN+ GL +NR + E VR LEK E
Sbjct: 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRW-ALEKAQLWDE 135
Query: 757 YGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGA 816
D+ + LSGGQ+QR+ +ARA+ ++ L D+ + +D + I +
Sbjct: 136 VKDR--LDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI-ESLFLEL 192
Query: 817 LKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
K TI+LVTH + D + + +G IV+ G
Sbjct: 193 KKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227
|
Length = 250 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 53/190 (27%), Positives = 96/190 (50%), Gaps = 20/190 (10%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFR---LVEPSG--GRIIIDGIDISLLGLH 1339
+K + I G+ ++G +G GKST+++ R L+E GR++ DG D+ +
Sbjct: 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88
Query: 1340 --DLRSRFGIIPQEPVLFEGTVRSNID---PIGQYS---DEEIWKSLERCQLKDVVAAKP 1391
++R R G++ Q+P F ++ NI I Y+ DE + +SL + + D
Sbjct: 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK--- 145
Query: 1392 DKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF 1451
DKL+ +SG + S GQ+Q LC+ R + ++ MDE +++D + +I+ + E
Sbjct: 146 DKLN----ESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK 201
Query: 1452 AACTIISIAH 1461
TI+ + H
Sbjct: 202 KNFTIVIVTH 211
|
Length = 269 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 51/196 (26%), Positives = 95/196 (48%), Gaps = 37/196 (18%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH------KISGKVKVCGTTAYVA 714
+ L +++L+I + +TA +G G GKS+ L L M+ +++GK+ + G Y
Sbjct: 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRC-LNRMNDTIDGCRVTGKITLDGEDIYDP 91
Query: 715 QTSWIQ---------------NGTIEENILFG-----LPMNRAKYGEVVRVCCLEKDLEM 754
+ ++ +I EN+ +G L ++A+ E+V E L
Sbjct: 92 RLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIV-----ETSLRK 146
Query: 755 MEYGDQTE--IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKEC 812
++ + + E G LSGGQ+QR+ +ARA+ ++ L+D+ SA+D + + E
Sbjct: 147 AGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV--EE 204
Query: 813 VRGALKGK-TIILVTH 827
+ L+ TI++VTH
Sbjct: 205 LIDELRQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 1e-10
Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 31/222 (13%)
Query: 1277 YRSNTPL---VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDI 1333
Y+ TP + + G+ +VG+TGSGKSTLIQ L++P+ G + +D I I
Sbjct: 12 YQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITI 71
Query: 1334 SLLG----LHDLRSRFGIIPQ--EPVLFEGTVRSNID--------PIGQYSDEEIWKSLE 1379
+ + +R R G++ Q E LFE TV I + + + ++
Sbjct: 72 THKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMD 131
Query: 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
+DV++ P ++ S GQ + + + ++ + ++ +DE TA +D Q+
Sbjct: 132 LGFSRDVMSQSPFQM-----------SGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQS 180
Query: 1440 DAEIQRIIRE--EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
++ R+++ TII ++H + V D VIV+ G
Sbjct: 181 KRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEG 222
|
Length = 286 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 1e-10
Identities = 57/213 (26%), Positives = 101/213 (47%), Gaps = 39/213 (18%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI---- 700
+EV + +DD + LKN+NL+I K +TA++G G GKS+ + + L M+ +
Sbjct: 4 IEVENLNTYFDDAH---ILKNVNLDIPKNSVTALIGPSGCGKSTFIRT-LNRMNDLIPGF 59
Query: 701 --SGKVKVCGTTAY---------------VAQTSWIQNGTIEENILFGLPM----NRAKY 739
G + + G Y V Q +I +N+ +GL + +
Sbjct: 60 RHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFI 119
Query: 740 GEVVRVCCLEKDLEMMEYGDQTE--IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVF 797
E V E+ L+ D+ + + + + LSGGQ+QR+ +AR + ++ L+D+
Sbjct: 120 EERV-----EESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPC 174
Query: 798 SAVDAHTGSDIFKECVRGALKGK-TIILVTHQV 829
SA+D + + I E + LK TI++VTH +
Sbjct: 175 SALDPISTTKI--EDLIHKLKEDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 60/230 (26%), Positives = 97/230 (42%), Gaps = 59/230 (25%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
+ RY T VL + L I G+ + VVGR+G GKSTL+++ L PS G +
Sbjct: 17 AVSKRYGERT--VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL----- 69
Query: 1332 DISLLG---LHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVA 1388
L G L + R ++ Q+ L WK + D V
Sbjct: 70 ---LAGTAPLAEAREDTRLMFQDARLLP------------------WKK-----VIDNVG 103
Query: 1389 A------KPDKLDSL----VADSGDNW----SVGQRQLLCLGRVMLKHSRLLFMDEATAS 1434
+ L +L +AD + W S GQ+Q + L R ++ LL +DE +
Sbjct: 104 LGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGA 163
Query: 1435 VDSQTDAEIQRII-----REEFAACTIISIAHRIP-TVMDCDRVIVVDAG 1478
+D+ T E+Q +I + F T++ + H + V DRV++++ G
Sbjct: 164 LDALTRIEMQDLIESLWQQHGF---TVLLVTHDVSEAVAMADRVLLIEEG 210
|
Length = 257 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 1e-10
Identities = 56/195 (28%), Positives = 96/195 (49%), Gaps = 22/195 (11%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE-PSGGR----IIIDGIDISL--L 1336
VLK I + + ++G +G GKSTL++ R+ + SG R +++D +I L
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 1337 GLHDLRSRFGIIPQEPVLFEGTVRSNI--DP--IGQYS----DEEIWKSLERCQLKDVVA 1388
+ +LR R G++ Q+P F ++ N+ P +G + DE + KSL + L D V
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK 138
Query: 1389 AKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR 1448
K SG S GQ+Q LC+ RV+ ++ MDE +++D + I+ +++
Sbjct: 139 DNLHK-------SGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQ 191
Query: 1449 EEFAACTIISIAHRI 1463
E TI + H +
Sbjct: 192 ELKQNYTIAIVTHNM 206
|
Length = 251 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 1e-10
Identities = 63/209 (30%), Positives = 97/209 (46%), Gaps = 36/209 (17%)
Query: 665 NINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNG-- 722
N+NL IK+G + ++G G GK+++L + G G++ + G V S IQ
Sbjct: 24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGED--VTHRS-IQQRDI 80
Query: 723 -------------TIEENILFGLPM-NRAKYGEVVRVC-CLE-KDLEMME--YGDQTEIG 764
++ EN+ +GL M K RV LE DL E Y DQ
Sbjct: 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQ---- 136
Query: 765 ERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK--GKTI 822
+SGGQ+QR+ LARA+ + L D+ S +DA+ + +E +R + T
Sbjct: 137 -----ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSM-REKIRELQQQFNITS 190
Query: 823 ILVTH-QVDFLHNVDLILVMREGMIVQSG 850
+ VTH Q + D ++VM +G I+Q G
Sbjct: 191 LYVTHDQSEAFAVSDTVIVMNKGKIMQIG 219
|
Length = 351 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-10
Identities = 58/256 (22%), Positives = 109/256 (42%), Gaps = 35/256 (13%)
Query: 1234 VSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIH 1293
V+ ++ + P +A + P+W ++L ++ Y+ N + I L+I
Sbjct: 294 VAFNKLNKLALAPYKAEFPRPQ--AFPDWQT---LELRNVTFAYQDNG-FSVGPINLTIK 347
Query: 1294 GGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPV 1353
GE + ++G GSGKSTL + L +P G I++DG ++ D R F + +
Sbjct: 348 RGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFH 407
Query: 1354 LFEGTVRSNIDPIGQYSDEEIWKS-LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQL 1412
LF+ + P G+ ++ + + LER ++ + + ++ +L S GQ++
Sbjct: 408 LFDQL----LGPEGKPANPALVEKWLERLKMAHKLELEDGRISNL------KLSKGQKKR 457
Query: 1413 LCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF----------AACTIISIAHR 1462
L L + + +L +DE A D R EF TI +I+H
Sbjct: 458 LALLLALAEERDILLLDEWAADQDPH--------FRREFYQVLLPLLQEMGKTIFAISHD 509
Query: 1463 IPTVMDCDRVIVVDAG 1478
+ DR++ + G
Sbjct: 510 DHYFIHADRLLEMRNG 525
|
Length = 547 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 1e-10
Identities = 50/204 (24%), Positives = 91/204 (44%), Gaps = 21/204 (10%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
L ++ G +G +G G+GKST +++ + P G + + G D+ L +++
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV-LQNPKEVQR 75
Query: 1344 RFGIIPQE-PVLFEGTVRSNIDPI-------GQYSDEEIWKSLERCQLKDVVAAKPDKLD 1395
G +P+ P+ + VR + I GQ + + + +E L + K+
Sbjct: 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGL---RPEQHKKIG 132
Query: 1396 SLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACT 1455
L S G RQ + L + ++ ++L +DE T +D EI+ +I+ T
Sbjct: 133 QL--------SKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKT 184
Query: 1456 IISIAHRIPTVMD-CDRVIVVDAG 1478
II H + V CDRVI+++ G
Sbjct: 185 IILSTHIMQEVEAICDRVIIINKG 208
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 27/208 (12%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------------ 710
L NI+ E+++G A+VG GSGKS+L+ + SG + + G
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 711 -----AYVAQTSWIQ--NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLE-MMEYGDQTE 762
+ V Q Q T+ +++ FG P N + + EK L+ + + G +
Sbjct: 83 LRKKVSLVFQFPEAQLFENTVLKDVEFG-PKNFGFSEDEAK----EKALKWLKKVGLSED 137
Query: 763 IGERG-INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKT 821
+ + LSGGQ +R+ +A + + +I LD+ + +D ++ + G T
Sbjct: 138 LISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHT 197
Query: 822 IILVTHQVDFLHN-VDLILVMREGMIVQ 848
+ILVTH +D + D +LV+ G +++
Sbjct: 198 VILVTHNMDDVAEYADDVLVLEHGKLIK 225
|
Length = 287 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 2e-10
Identities = 61/239 (25%), Positives = 97/239 (40%), Gaps = 46/239 (19%)
Query: 1277 YRSNTPLVLK---GITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDI 1333
+ P LK +++ I+ GE I ++G+TGSGK+T I+ L+ P G I D
Sbjct: 12 FNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDE 71
Query: 1334 SLL------------------------GLHDLRSRFGIIPQ--EPVLFEGTVRSNI--DP 1365
+ ++R R G++ Q E LFE T+ +I P
Sbjct: 72 KNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGP 131
Query: 1366 IGQYSDEEIWKSLERCQLKDVVAAKPDKL----DSLVADSGDNWSVGQRQLLCLGRVMLK 1421
+ +E ++ +R AAK +L +S + S S GQ++ + L ++
Sbjct: 132 VSMGVSKE--EAKKR-------AAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAM 182
Query: 1422 HSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAG 1478
L DE TA +D Q EI I TII + H + V++ R I G
Sbjct: 183 EPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDG 241
|
Length = 305 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 2e-10
Identities = 62/218 (28%), Positives = 98/218 (44%), Gaps = 41/218 (18%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLA------------SILGE------MHKISGKV 704
L N +L KK +T ++GT GSGKS+++ +I+G+ + KI
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 705 KVCGTTAYVAQTSWIQ--NGTIEENILFGLPMNRA--------KYGEVVRVCCLEKDLEM 754
++ V Q Q TIE++I FG P+N K E++++ L +D
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFG-PVNLGENKQEAYKKVPELLKLVQLPED--- 142
Query: 755 MEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR 814
Y ++ LSGGQK+R+ LA + D + +LD+ +D D R
Sbjct: 143 --YVKRSPF-----ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFER 195
Query: 815 -GALKGKTIILVTHQVD-FLHNVDLILVMREGMIVQSG 850
K II+VTH +D L D ++VM EG ++ G
Sbjct: 196 LNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233
|
Length = 289 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 2e-10
Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 37/204 (18%)
Query: 1290 LSIHGGEKIGV---------------VGRTGSGKSTLIQVFFRLVE--PSG---GRIIID 1329
LSI+ GEK V +G +G GKST ++ R+ + PS G I+ +
Sbjct: 27 LSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYE 86
Query: 1330 GIDI--SLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYS--------DEEIWKSLE 1379
G++I S + + +LR G++ Q+P F ++ +NI +Y+ DE + +SL
Sbjct: 87 GLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLT 146
Query: 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
+ L D V D+L S S + S GQ+Q LC+ R + +L +DE +++D +
Sbjct: 147 KAALWDEVK---DRLHS----SALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPIS 199
Query: 1440 DAEIQRIIREEFAACTIISIAHRI 1463
+A+I+ +I E +II + H +
Sbjct: 200 NAKIEELITELKEEYSIIIVTHNM 223
|
Length = 268 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 61/227 (26%), Positives = 99/227 (43%), Gaps = 49/227 (21%)
Query: 1287 GITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL----- 1341
++ ++ GE +G+VG +GSGK+TL+ + P G + D L L+ L
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83
Query: 1342 ----RSRFGIIPQEP-------VLFEGTVRSNIDPIGQYSDEEI------WKSLERCQLK 1384
R+ +G + Q P V G + + +G +I W LER
Sbjct: 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDW--LER---- 137
Query: 1385 DVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAE-- 1442
V ++D D +S G +Q L + R ++ H RL+FMDE T +D A
Sbjct: 138 --VEIDAARID----DLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLL 191
Query: 1443 --IQRIIREEFAACTIIS--------IAHRIPTVMDCDRVIVVDAGL 1479
++ ++RE A I++ +AHR+ VM R VV++GL
Sbjct: 192 DLLRGLVRELGLAVVIVTHDLAVARLLAHRL-LVMKQGR--VVESGL 235
|
Length = 258 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 2e-10
Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 19/217 (8%)
Query: 1271 IDL-QVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIID 1329
IDL V +V+ ++ +I GE G++G G+GKST+ ++ ++ P G+I +
Sbjct: 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVL 64
Query: 1330 GIDISLLGLHDLRSRFGIIPQEPVL-FEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVA 1388
G + R G++PQ L E TVR N+ G+Y +++ A
Sbjct: 65 GEPVP-SRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---------GMSTREIEA 114
Query: 1389 AKPDKLDSLVADSGDNWSV-----GQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI 1443
P L+ +S + V G ++ L L R ++ +LL +DE T +D I
Sbjct: 115 VIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 174
Query: 1444 QRIIREEFAACTIISIAHRIPTVMD--CDRVIVVDAG 1478
+R A I + + CDR+ V+++G
Sbjct: 175 WERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESG 211
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 51/220 (23%), Positives = 99/220 (45%), Gaps = 32/220 (14%)
Query: 1277 YRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLL 1336
+R T +K ++ ++ G+ + ++G GSGKSTL ++ ++EP+ G I+I+ L
Sbjct: 21 FRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILIND---HPL 77
Query: 1337 GLHDLRSR---FGIIPQEP-----------VLFEGTVRSNIDPIGQYSDEEIWKSLERCQ 1382
D R +I Q+P + + +R N D + ++I+++L
Sbjct: 78 HFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVG 137
Query: 1383 L-KDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDA 1441
L D P L + GQ+Q + L R ++ +++ DEA AS+D +
Sbjct: 138 LLPDHANYYPHML-----------APGQKQRVALARALILRPKIIIADEALASLDMSMRS 186
Query: 1442 EIQRIIRE--EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
++ ++ E E + I + I + D+V+V+ G
Sbjct: 187 QLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEG 226
|
Length = 267 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 3e-10
Identities = 56/241 (23%), Positives = 96/241 (39%), Gaps = 40/241 (16%)
Query: 1263 PAHGNVDLIDL-QVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP 1321
P N LI+L V R N +L ++ ++ GE +VG G+GK+TL+ + P
Sbjct: 24 PIEINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP 83
Query: 1322 SGGRIIIDG-----IDISLLGLHDLRSRFGIIP---QEPVLFEGTVRSNI-----DPIGQ 1368
S G + + G + +LR R G++ E TVR + IG
Sbjct: 84 SSGDVTLLGRRFGKGETI----FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGI 139
Query: 1369 Y---SDEEIWKS----LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLK 1421
Y E + LE K + A +P SL S G+++ + + R ++K
Sbjct: 140 YQEDLTAEDLAAAQWLLELLGAKHL-ADRP--FGSL--------SQGEQRRVLIARALVK 188
Query: 1422 HSRLLFMDEATASVDSQTDAEIQRIIREEFA---ACTIISIAHRIPTVMDC-DRVIVVDA 1477
LL +DE +D ++ + E A A ++ + H + C +++
Sbjct: 189 DPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKE 248
Query: 1478 G 1478
G
Sbjct: 249 G 249
|
Length = 257 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 3e-10
Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 30/189 (15%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASI-----LGEMHKISGKVKVCGTTAY----- 712
+KN+ L+I K +TA +G G GKS++L L ++ GKV G Y
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 713 ----------VAQTSWIQNGTIEENILFGLPMNRAK--YGEVVRVCCLEKDLEMMEYGDQ 760
V Q +I +NI +G +N K E+V E+ L D+
Sbjct: 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELV-----ERSLRQAALWDE 140
Query: 761 TE--IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK 818
+ + + G++LSGGQ+QR+ +ARA+ ++ L+D+ SA+D + I +E + +
Sbjct: 141 VKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRI-EELMHELKE 199
Query: 819 GKTIILVTH 827
TII+VTH
Sbjct: 200 QYTIIIVTH 208
|
Length = 264 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 3e-10
Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 36/209 (17%)
Query: 1264 AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSG 1323
+ +++IDL RY + VLKG++L + G+ I ++G +GSGKST ++ L +PS
Sbjct: 2 SENKLNVIDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE 59
Query: 1324 GRIIIDGIDISLL-------------GLHDLRSRFGIIPQEPVLF------EGTVRSNID 1364
G I+++G I+L+ L LR+R ++ Q L+ E + + I
Sbjct: 60 GSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ 119
Query: 1365 PIG---QYSDEEIWKSLERCQLKDVVAAK-PDKLDSLVADSGDNWSVGQRQLLCLGRVML 1420
+G Q + E K L + + + K P L S GQ+Q + + R +
Sbjct: 120 VLGLSKQEARERAVKYLAKVGIDERAQGKYPVHL-----------SGGQQQRVSIARALA 168
Query: 1421 KHSRLLFMDEATASVDSQTDAEIQRIIRE 1449
+L DE T+++D + E+ RI+++
Sbjct: 169 MEPEVLLFDEPTSALDPELVGEVLRIMQQ 197
|
Length = 257 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 3e-10
Identities = 61/216 (28%), Positives = 100/216 (46%), Gaps = 39/216 (18%)
Query: 640 DDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH- 698
++VR+ F + + LKNINL+I K +TA +G G GKS+LL M+
Sbjct: 9 TAPSKIQVRNLNFYYGKFHA---LKNINLDIAKNQVTAFIGPSGCGKSTLL-RTFNRMYE 64
Query: 699 -----KISGKVKVCGTTAYVAQTSW----------IQNGT-----IEENILFGL----PM 734
+ G++ + G + Q T I +NI FG+ +
Sbjct: 65 LYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKL 124
Query: 735 NRAKYGEVVRVCCLEKDLEMMEYGDQTE--IGERGINLSGGQKQRIQLARAVYQDCDIYL 792
+RA+ E RV E L ++ + + + G +LSGGQ+QR+ +AR + ++ L
Sbjct: 125 SRAEMDE--RV---EWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLL 179
Query: 793 LDDVFSAVDAHTGSDIFKECVRGALKGK-TIILVTH 827
LD+ SA+D + I E + LK T+++VTH
Sbjct: 180 LDEPCSALDPISTGRI--EELITELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 3e-10
Identities = 63/225 (28%), Positives = 100/225 (44%), Gaps = 27/225 (12%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
+E RD +S+ +E L NIN + A++G G+GKS+L G + SG V
Sbjct: 4 IETRDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 705 KVCG-------------TTAYVAQTS--WIQNGTIEENILFGLPMNRAKYGEVV--RVCC 747
+ G V Q I + T+E++I FG P+N E V RV
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFG-PINLGLDEETVAHRVSS 120
Query: 748 LEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSD 807
L + E D+ +LSGG+K+R+ +A + + + +LD+ + +D +
Sbjct: 121 ALHMLGLEELRDRVP-----HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175
Query: 808 IFKECVRGALK-GKTIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
+ G T+I THQ+D + + D I VM +G IV G
Sbjct: 176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 3e-10
Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 12/189 (6%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE-----PSGGRIIIDGIDI--SLLG 1337
L GI+L E ++G +G GKST ++ R+ + G I +G +I S +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 1338 LHDLRSRFGIIPQEPVLFEGTVRSNID---PIGQYSDEEIWKSLERCQLKDVVAAKPDKL 1394
L +LR G++ Q+P F +V N+ I D+E+ LK K K
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK- 138
Query: 1395 DSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAAC 1454
D+L ++ +S GQ+Q +C+ R + +++ +DE T+++D + +EI+ + E
Sbjct: 139 DNLDRNA-QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQY 197
Query: 1455 TIISIAHRI 1463
T I + H +
Sbjct: 198 TFIMVTHNL 206
|
Length = 251 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 3e-10
Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 47/230 (20%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSS-------LLASILGEMH---------KISGKVKV 706
L N+++EI +G+ AI+G GSGK++ LL G + K + + +
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82
Query: 707 CGTTAYVAQTSW--IQN---------------------GTIEENILFGLPMNRAKYGEVV 743
+ +T + I+ TIE++I+FG P++ G V
Sbjct: 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFG-PVS---MG-VS 137
Query: 744 RVCCLEKDLEMMEY-GDQTEIGERG-INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVD 801
+ ++ + +E G +R LSGGQK+R+ LA + + D + D+ + +D
Sbjct: 138 KEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLD 197
Query: 802 AHTGSDIFKECVRGALKGKTIILVTHQVD-FLHNVDLILVMREGMIVQSG 850
+I + +GKTIILVTH +D L + ++G I++ G
Sbjct: 198 PQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 3e-10
Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 36/193 (18%)
Query: 659 GEECL-KNINLEIKKGDLTAIVGTVGSGKSSLLASILGEM---HKISGKVKVCGTTAYVA 714
CL N+N I KG++ ++G G GKS+LL+ ++G + +G++ + +
Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML 72
Query: 715 QTSWIQNG------------TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTE 762
+ Q G ++ +N+LF LP K G R
Sbjct: 73 PAAQRQIGILFQDALLFPHLSVGQNLLFALP-ATLK-GNARR---------NAANAALER 121
Query: 763 IGERGI------NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGA 816
G G LSGGQ+ R+ L RA+ LLD+ FS +D F++ V
Sbjct: 122 SGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQ-FRQWVFSE 180
Query: 817 LK--GKTIILVTH 827
++ G + VTH
Sbjct: 181 VRAAGIPTVQVTH 193
|
Length = 213 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-10
Identities = 41/202 (20%), Positives = 94/202 (46%), Gaps = 23/202 (11%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNG 722
L +I+L +KKG++ +G G+GK++ + ILG + SG++ G + + + G
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIG 75
Query: 723 TI------------EENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGI-N 769
+ EN+ + + + V L+++ D ++ +
Sbjct: 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEV------LDVVGLKD---SAKKKVKG 126
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQV 829
S G KQR+ +A A+ + D+ +LD+ + +D ++ + + +G T+++ +H +
Sbjct: 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL 186
Query: 830 DFLHNV-DLILVMREGMIVQSG 850
+ V D I ++ +G +++ G
Sbjct: 187 SEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 4e-10
Identities = 65/226 (28%), Positives = 98/226 (43%), Gaps = 44/226 (19%)
Query: 1273 LQVRYRSNTPLVLKGITLSIHGGEKI-GVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDG- 1330
L R R + TL I + G +GSGK++LI + L P GRI ++G
Sbjct: 4 LNFRQRLGNFALDANFTLP---ARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGR 60
Query: 1331 --IDISL-LGLHDLRSRFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDV 1386
+D + L + R G + Q+ LF TVR N+ +Y +WKS
Sbjct: 61 VLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNL----RYG---MWKS--------- 104
Query: 1387 VAAKPDKLDSLVADSGDN---------WSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS 1437
+ D LVA G S G++Q + +GR +L LL MDE AS+D
Sbjct: 105 ---MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161
Query: 1438 QTDAEI----QRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
EI +R+ E I+ ++H + V+ DRV+V++ G
Sbjct: 162 PRKREILPYLERLRDE--INIPILYVSHSLDEVLRLADRVVVLENG 205
|
Length = 352 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 4e-10
Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 28/211 (13%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
+L ++L+ G+ G++G GSGKSTL+++ R PS G I++D +
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85
Query: 1344 RFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWK-SLERCQLKD---------VVAAKPD 1392
+ +PQ+ EG TVR + IG+Y W +L R D +V KP
Sbjct: 86 KVAYLPQQLPAAEGMTVRELV-AIGRYP----WHGALGRFGAADREKVEEAISLVGLKP- 139
Query: 1393 KLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVD--SQTD--AEIQRIIR 1448
L + DS S G+RQ + ++ + SR L +DE T+++D Q D A + R+ +
Sbjct: 140 -LAHRLVDS---LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ 195
Query: 1449 EEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
E T+I++ H I CD ++ + G
Sbjct: 196 ER--GLTVIAVLHDINMAARYCDYLVALRGG 224
|
Length = 265 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 52/191 (27%), Positives = 84/191 (43%), Gaps = 31/191 (16%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
VL ++L + G+ + ++G G+GKSTL++V LV P G I + +
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK-----------RNGKL 67
Query: 1344 RFGIIPQ----EPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVA 1399
R G +PQ + L TV + E+I +L+R Q ++ A KL
Sbjct: 68 RIGYVPQKLYLDTTL-PLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKL----- 121
Query: 1400 DSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII---REEFAACTI 1456
S G+ Q + L R +L +LL +DE T VD + +I R E C +
Sbjct: 122 ------SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRREL-DCAV 174
Query: 1457 ISIAHRIPTVM 1467
+ ++H + VM
Sbjct: 175 LMVSHDLHLVM 185
|
Length = 251 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 5e-10
Identities = 51/196 (26%), Positives = 93/196 (47%), Gaps = 26/196 (13%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE--PS---GGRIIIDGIDI--SLLG 1337
LKGI L + E ++G +G GKST ++ R+ + P G + + G +I
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 1338 LHDLRSRFGIIPQEPVLFEGTVRSNI----------DPIGQYSDEEIWKSLERCQLKDVV 1387
+ LR + G++ Q+P F ++ N+ D DE + SL++ + D V
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDK--AVLDEAVETSLKQAAIWDEV 138
Query: 1388 AAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII 1447
D L +S + S GQ+Q +C+ RV+ ++ +DE T+++D + +I+ ++
Sbjct: 139 K---DHLH----ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENML 191
Query: 1448 REEFAACTIISIAHRI 1463
E TII + H +
Sbjct: 192 LELRDQYTIILVTHSM 207
|
Length = 252 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 5e-10
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 15/179 (8%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI--------SGKVKVCGTTAYVA 714
L+N+NLEIK GD+ A+VG G+GK++LL ILG SGKV+V T
Sbjct: 399 LRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSAL 458
Query: 715 QTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQ 774
+ E IL L R+K G++ + L D + LS GQ
Sbjct: 459 IPGEYEPEFGEVTILEHL---RSKTGDLNAA---VEILNRAGLSDAVLYRRKFSELSTGQ 512
Query: 775 KQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFL 832
K+R +LA+ + + ++ L+D+ + +D T + ++ A + G T+I+VTH+ +
Sbjct: 513 KERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVG 571
|
Length = 593 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 5e-10
Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 54/232 (23%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTS 717
+E LK +NL +KKG++ AI+G GSGKS+L +I G H +V T
Sbjct: 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG--HP---SYEVTSGTILFK--- 62
Query: 718 WIQNGTIEENILFGLPMNRAKYG---------EV---------------VRVCCLEKDLE 753
+++L P RA+ G E+ R E+ L+
Sbjct: 63 -------GQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLD 115
Query: 754 MMEYGDQT-----------EIGERGIN--LSGGQKQRIQLARAVYQDCDIYLLDDVFSAV 800
++++ E R +N SGG+K+R ++ + + + +LD++ S +
Sbjct: 116 LLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGL 175
Query: 801 DAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNV--DLILVMREGMIVQSG 850
D + + R ++ +++TH L+ + D + V+ +G IV+SG
Sbjct: 176 DIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 5e-10
Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 29/206 (14%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD-LRS 1343
L I+ G+ ++G G+GKSTL+++ +P G I+IDG ++ L +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 1344 RFGIIPQEPVLF-EGTVRSNIDPIGQYS------DEEIWKSLERCQLKDV-VAAKPD-KL 1394
II QE L E TV N+ +GQ + + R QL+ + V PD L
Sbjct: 80 GVAIIYQELHLVPEMTVAENL-YLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL 138
Query: 1395 DSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAAC 1454
L S+GQRQ++ + + + +++R++ DE T+S+ ++ ++ R+IRE A
Sbjct: 139 KYL--------SIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEG 190
Query: 1455 T-IISIAHRIPTVMD-----CDRVIV 1474
I+ ++HR M+ CD + V
Sbjct: 191 RVILYVSHR----MEEIFALCDAITV 212
|
Length = 501 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 6e-10
Identities = 44/203 (21%), Positives = 91/203 (44%), Gaps = 11/203 (5%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSR 1344
L I + I G+ +VG+ G GKS+L+ ++ G++ + S RSR
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76
Query: 1345 ----FGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVAD 1400
Q+P L TV NI ++ + + C L+ + P + + +
Sbjct: 77 NRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGE 136
Query: 1401 SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQ-----TDAEIQRIIREEFAACT 1455
G N S GQRQ +C+ R + +++ ++F+D+ +++D I + ++++ T
Sbjct: 137 RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDD--KRT 194
Query: 1456 IISIAHRIPTVMDCDRVIVVDAG 1478
++ + H++ + D +I + G
Sbjct: 195 LVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 6e-10
Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 25/196 (12%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------- 709
+ L NI+ ++ G+ I G G GKS+LL + + SG + G
Sbjct: 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPE 77
Query: 710 -----TAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIG 764
+Y AQT + T+ +N++F + R + + DL + I
Sbjct: 78 IYRQQVSYCAQTPTLFGDTVYDNLIFPWQI-RNQQPDPAI---FLDDL--ERFALPDTIL 131
Query: 765 ERGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTG---SDIFKECVRGALKGK 820
+ I LSGG+KQRI L R + + LLD++ SA+D ++I VR +
Sbjct: 132 TKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVRE--QNI 189
Query: 821 TIILVTHQVDFLHNVD 836
++ VTH D +++ D
Sbjct: 190 AVLWVTHDKDEINHAD 205
|
Length = 225 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 6e-10
Identities = 57/224 (25%), Positives = 96/224 (42%), Gaps = 45/224 (20%)
Query: 1288 ITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIII---DGIDISLLGLHD---- 1340
++ ++ GE +G+VG +GSGKSTL+ + P G G ++ L L +
Sbjct: 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81
Query: 1341 --LRSRFGIIPQEP-------VLFEGTVRSNIDPIGQ--YSD--EEIWKSLERCQLKDVV 1387
+R+ +G + Q P V + + IG Y + LE V
Sbjct: 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEE------V 135
Query: 1388 AAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI---- 1443
P ++D D +S G +Q L + R ++ RL+FMDE T +D A +
Sbjct: 136 EIDPTRID----DLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL 191
Query: 1444 QRIIREEFAACTIIS--------IAHRIPTVMDCDRVIVVDAGL 1479
+ ++R+ A I++ +A R+ VM R VV++GL
Sbjct: 192 RGLVRDLGLAVIIVTHDLGVARLLAQRL-LVMQQGR--VVESGL 232
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 7e-10
Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 34/220 (15%)
Query: 1275 VRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDIS 1334
+R R LK I+LS+ GE + ++G +G GK+TL+++ L + G I G DI+
Sbjct: 10 IRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT 69
Query: 1335 LL--GLHDLRSRFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKP 1391
L D +GI+ Q LF TV NI G + R + VA +
Sbjct: 70 RLPPQKRD----YGIVFQSYALFPNLTVADNI-AYGLKN---------RGMGRAEVAERV 115
Query: 1392 DKLDSLVA--DSGDNW----SVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQR 1445
+L LV S + S GQ+Q + L R + LL +DE S DA ++
Sbjct: 116 AELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPL----SALDARVRE 171
Query: 1446 IIREEFAA------CTIISIAHRIPTVMD-CDRVIVVDAG 1478
+R E T I + H + DR++V++ G
Sbjct: 172 HLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHG 211
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 7e-10
Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 23/192 (11%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFR---LVE--PSGGRIIIDGIDI-SLLGL 1338
LK I L I + ++G +G GKSTL++ R L+E G++ +DG DI + +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 1339 HDLRSRFGIIPQEPVLFEGTVRSNIDPIG---------QYSDEEIWKSLERCQLKDVVAA 1389
DLR + G++ Q+P F ++ N+ G + DE + +SL L D V
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENV-AYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK- 136
Query: 1390 KPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 1449
D+L S S GQ+Q LC+ R + ++ MDE T+++D +I+ ++ E
Sbjct: 137 --DRLKSH----AFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEE 190
Query: 1450 EFAACTIISIAH 1461
TI+ + H
Sbjct: 191 LKKNYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 7e-10
Identities = 51/204 (25%), Positives = 96/204 (47%), Gaps = 22/204 (10%)
Query: 1275 VRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSG-----GRIIID 1329
+ + NT ++GI++ I+ + ++G +G GKST I+ R+ E G G +
Sbjct: 13 LSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFF 72
Query: 1330 GIDI--SLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYS--------DEEIWKSLE 1379
G +I + ++ LR + G++ Q P F ++ N+ + S DE + +L+
Sbjct: 73 GQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALK 132
Query: 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
L V K +K S + SG GQ+Q LC+ R + ++L MDE +++D
Sbjct: 133 GAALWQEVKDKLNK--SALGLSG-----GQQQRLCIARALAIKPKVLLMDEPCSALDPIA 185
Query: 1440 DAEIQRIIREEFAACTIISIAHRI 1463
+++ +I + TI + H +
Sbjct: 186 TMKVEELIHSLRSELTIAIVTHNM 209
|
Length = 259 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 8e-10
Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 27/176 (15%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDIS------LLG 1337
+ ++ +++ GE + + G G+GK+TL+++ L+ P G + G I
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQA 76
Query: 1338 LHDLRSRFGIIPQEPVLFEGTVRSNI---DPIGQYSDEE-IWKSLERCQLKDVVAAKPDK 1393
L L + GI E T N+ + IW++L + L +
Sbjct: 77 LLYLGHQPGIKT------ELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL------- 123
Query: 1394 LDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 1449
D V S GQ++ + L R+ L + L +DE ++D + A + ++
Sbjct: 124 EDLPVG----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAA 175
|
Length = 209 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 9e-10
Identities = 51/203 (25%), Positives = 98/203 (48%), Gaps = 15/203 (7%)
Query: 678 IVGTVGSGKSSLLASILGEMHKISGKVKV--CGTTAY-----------VAQTSWIQNGTI 724
+VG G+GKSS+L ++ + G++ + C + + Q+ + +GT+
Sbjct: 1267 VVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTV 1326
Query: 725 EENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAV 784
NI N A E + ++ ++ +G E+ E G N S GQ+Q + LARA+
Sbjct: 1327 RFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARAL 1386
Query: 785 YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREG 844
+ I +LD+ ++VD T S + + +R K T++++ H+++ + + D ILV+ G
Sbjct: 1387 LRRSKILVLDEATASVDVRTDS-LIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSG 1445
Query: 845 MIVQSGRYNALL-NSGMDFGALV 866
+++ LL F +V
Sbjct: 1446 QVLEYDSPQELLSRDTSAFFRMV 1468
|
Length = 1495 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 49/197 (24%), Positives = 93/197 (47%), Gaps = 18/197 (9%)
Query: 1290 LSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIP 1349
L++ GE + ++G +G+GKSTL+ + +EP+ G I ++ GL + ++
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQRPVSMLF 76
Query: 1350 QEPVLFEG-TVRSNI----DPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDN 1404
QE LF TVR NI P + + E+ Q K V AA+ + + +
Sbjct: 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQ--------QEKVVDAAQQVGIADYLDRLPEQ 128
Query: 1405 WSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE--EFAACTIISIAHR 1462
S GQRQ + L R +++ + +L +DE +++D E+ ++++ T++ + H
Sbjct: 129 LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH 188
Query: 1463 IPTVMD-CDRVIVVDAG 1478
+ ++ VV G
Sbjct: 189 LSDARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 34/216 (15%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDI----SLLG-- 1337
VL GI L + GE + ++G +GSGK+TL++ L +P G I + I I SL
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 1338 --LHDLRSRFGIIPQEPVLF-EGTVRSNI--DPI---GQYSDEEIWKS---LERCQLKDV 1386
+ LR G + Q LF TV NI P+ G+ +E ++ L + L
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK 137
Query: 1387 VAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRI 1446
+ P +L S GQ+Q + + R + ++ DE T+++D + E+
Sbjct: 138 ETSYPRRL-----------SGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT 186
Query: 1447 IR---EEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
IR +E T++ + H + D DR I +D G
Sbjct: 187 IRQLAQE--KRTMVIVTHEMSFARDVADRAIFMDQG 220
|
Length = 250 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 26/181 (14%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDG--IDISLL----G 1337
L ITL GE + ++G +G+GKS+L++V L P G + I G D S
Sbjct: 17 ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76
Query: 1338 LHDLRSRFGIIPQEPVLF------EGTVRSNIDPIGQYSDE---EIWKSLERCQLKDVVA 1388
+ DLR G++ Q+ L+ E + + +G D+ K L+R +LK
Sbjct: 77 IRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYAD 136
Query: 1389 AKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR 1448
P L S GQ+Q + + R ++ ++L DE TA++D + A+I II+
Sbjct: 137 RYPLHL-----------SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIK 185
Query: 1449 E 1449
E
Sbjct: 186 E 186
|
Length = 242 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 1e-09
Identities = 59/225 (26%), Positives = 109/225 (48%), Gaps = 20/225 (8%)
Query: 1268 VDLIDLQVRYRSNTPL---VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGG 1324
++L ++ Y++ TP L + L+I G +G TGSGKST++Q+ L P+ G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 1325 RIIIDGIDISLLG----LHDLRSRFGIIPQ--EPVLFEGTVRSNIDPIGQ---YSDEEIW 1375
+ +D I+ + +R + G++ Q E LFE TV ++ Q S EE
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA- 121
Query: 1376 KSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASV 1435
++L R +L V + +SL + S GQ + + + ++ ++L +DE TA +
Sbjct: 122 EALAREKLALVGIS-----ESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGL 176
Query: 1436 DSQTDAEIQRIIRE-EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
D + E+ + ++ + TI+ + H + V + D V V++ G
Sbjct: 177 DPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKG 221
|
Length = 280 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (146), Expect = 1e-09
Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 44/228 (19%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ 720
+ LKNIN++ + +TAI+G G GKS+LL + L M+ I ++ G + +
Sbjct: 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRA-LNRMNDIVSGARLEGAVLLDNENIYSP 76
Query: 721 N---------------------GTIEENILFGLPM----NRAKYGEVVRVCCLEKDLEMM 755
N +I +N+ FG M +++ EVV EK L
Sbjct: 77 NLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVV-----EKSLRQA 131
Query: 756 EYGDQTE--IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECV 813
D+ + + + G+ LSGGQ+QR+ +AR + + ++ L+D+ SA+D + I +E +
Sbjct: 132 ALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRI-EELM 190
Query: 814 RGALKGKTIILVTHQVD----------FLHNVDLILVMREGMIVQSGR 851
+ + TI +VTH + FL DL+ R G I R
Sbjct: 191 QELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPR 238
|
Length = 251 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-09
Identities = 60/218 (27%), Positives = 102/218 (46%), Gaps = 61/218 (27%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
+LK I+LS G KIGV+G G+GKSTL++ I+ G+D G
Sbjct: 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLR-------------IMAGVDKEFNGEARPAP 66
Query: 1344 --RFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVA--AKPD-KLDSL 1397
+ G +PQEP L TVR N+ + EI +L+R ++ A A+PD +D+L
Sbjct: 67 GIKVGYLPQEPQLDPTKTVRENV----EEGVAEIKDALDR--FNEISAKFAEPDADMDAL 120
Query: 1398 VA---------DSGDNW-------------------------SVGQRQLLCLGRVMLKHS 1423
+A D+ D W S G+R+ + L R++L
Sbjct: 121 LAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKP 180
Query: 1424 RLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAH 1461
+L +DE T +D+++ A +++ ++ E+ T++++ H
Sbjct: 181 DMLLLDEPTNHLDAESVAWLEQHLQ-EYPG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 1e-09
Identities = 66/214 (30%), Positives = 104/214 (48%), Gaps = 31/214 (14%)
Query: 1282 PLVLK---GITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGL 1338
P LK G+TL ++ GE +GVVG +G GKST + LV+ + G + G D LLG+
Sbjct: 31 PKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD--LLGM 88
Query: 1339 -----HDLRSRFGIIPQEPVLFEGTVRSNI-----DPIGQYSDEEIWKSLERCQLKDVVA 1388
+RS +I Q+P L R I +P+ Y + L R ++KD V
Sbjct: 89 KDDEWRAVRSDIQMIFQDP-LASLNPRMTIGEIIAEPLRTYHPK-----LSRQEVKDRVK 142
Query: 1389 AKPDK---LDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-- 1443
A K L +L+ +S GQ Q + + R ++ +L+ DE +++D A++
Sbjct: 143 AMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVN 202
Query: 1444 --QRIIREEFAACTIISIAHRIPTVMD-CDRVIV 1474
Q++ RE ++I IAH + V DRV+V
Sbjct: 203 LLQQLQRE--MGLSLIFIAHDLAVVKHISDRVLV 234
|
Length = 331 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 54/217 (24%), Positives = 95/217 (43%), Gaps = 42/217 (19%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIII----DGIDISLLGLH 1339
VLK ++L+++ GE + + G +G+GKSTL++ + P GRI++ +D++
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 1340 D---LR-------SRF-GIIPQ--------EPVLFEGTVRSNIDPIGQYSDEEIWKSLER 1380
+ +R S+F +IP+ EP+L G R + E+ L
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPRE----AARARARELLARLN- 137
Query: 1381 CQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTD 1440
P++L L +S G++Q + + R + +L +DE TAS+D+
Sbjct: 138 ---------IPERLWHL---PPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANR 185
Query: 1441 AEIQRIIREEFAA-CTIISIAHRIPTVMDC-DRVIVV 1475
+ +I E A +I I H DRV+ V
Sbjct: 186 QVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 1e-09
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 28/193 (14%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASI-----LGEMHKISGKVKVCGTTAY--- 712
+ L NIN++I K +TA++G G GKS+ L ++ L E KI G V G Y
Sbjct: 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNN 80
Query: 713 ------------VAQTSWIQNGTIEENILFGLPM----NRAKYGEVVRVCCLEKDLEMME 756
V QT +I +NI +G + ++ K E+V L+K E
Sbjct: 81 FDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQS-LKKSALWNE 139
Query: 757 YGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGA 816
D+ + ++LSGGQ+QR+ +AR + + ++ L+D+ SA+D + I +E +
Sbjct: 140 VKDK--LNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKI-EELIINL 196
Query: 817 LKGKTIILVTHQV 829
+ TII+VTH +
Sbjct: 197 KESYTIIIVTHNM 209
|
Length = 254 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-09
Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 28/192 (14%)
Query: 1300 VVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLF-EGT 1358
++G +G GK+TL+++ +P G I++DG D++ + H LR ++ Q LF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH-LRH-INMVFQSYALFPHMT 58
Query: 1359 VRSNID-PIGQYS------DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411
V N+ + + ++L QL++ KP +L S GQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQL-----------SGGQQQ 107
Query: 1412 LLCLGRVMLKHSRLLFMDEATASVD----SQTDAEIQRIIREEFAACTIISIAHRIPTVM 1467
+ L R ++ ++L +DE +++D Q E++ I + T + + H M
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ--LGITFVFVTHDQEEAM 165
Query: 1468 D-CDRVIVVDAG 1478
DR+ ++ G
Sbjct: 166 TMSDRIAIMRKG 177
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-09
Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 32/209 (15%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFR---LVEPS--GGRI 1326
+L + Y L I++ I +G +G GKSTL++ F R LV+ G I
Sbjct: 30 NLNLFYGDKQ--ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEI 87
Query: 1327 IIDGIDISLLGLH--DLRSRFGIIPQEPVLFEGTVRSNIDPIGQYS------------DE 1372
+DG +I + +LR R G++ Q P F ++ N+ Y DE
Sbjct: 88 RLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENV----VYGLRLQGINNRRVLDE 143
Query: 1373 EIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEAT 1432
+ +SL L D V D+L ++ S GQ+Q L + R + +L +DE T
Sbjct: 144 AVERSLRGAALWDEVK---DRLH----ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPT 196
Query: 1433 ASVDSQTDAEIQRIIREEFAACTIISIAH 1461
+++D + +I+ +I E + TI+ + H
Sbjct: 197 SALDPISTLKIEELITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 2e-09
Identities = 52/223 (23%), Positives = 95/223 (42%), Gaps = 31/223 (13%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT-------- 710
G+ L + + +TAI G GSGK++L+ I G G++ + G T
Sbjct: 10 GDFSLD-ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGI 68
Query: 711 ---------AYVAQ-TSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQ 760
YV Q + ++ N+ +G+ R R E+ +E++ G
Sbjct: 69 FLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSE----RRISFERVIELLGIG-- 122
Query: 761 TEIGERGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDI--FKECVRGAL 817
+ R LSGG+KQR+ + RA+ + L+D+ +A+D +I + E +
Sbjct: 123 -HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181
Query: 818 KGKTIILVTHQVD-FLHNVDLILVMREGMIVQSGRYNALLNSG 859
G I+ V+H + L D ++V+ +G + +G + S
Sbjct: 182 -GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 2e-09
Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 58/238 (24%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL----VEPSGGRII 1327
+L VR T +L ++L++ GE + ++G G+GKSTL+ R + P G +
Sbjct: 7 NLSVRLGGRT--LLDDVSLTLRPGEVVAILGPNGAGKSTLL----RALSGELSPDSGEVR 60
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVL-FEGTVRSNIDPIGQYSDEEI-------WKSLE 1379
++G ++ +L R ++PQ L F TV EE+ L
Sbjct: 61 LNGRPLADWSPAELARRRAVLPQHSSLSFPFTV------------EEVVAMGRAPH-GLS 107
Query: 1380 RCQLKDVVAAKPDKLDSLVAD---------SGDNWSVGQRQLLCLGRVMLKHS------R 1424
R + +VAA ++D +A SG G++Q + L RV+ + R
Sbjct: 108 RAEDDALVAAALAQVD--LAHLAGRDYPQLSG-----GEQQRVQLARVLAQLWEPDGPPR 160
Query: 1425 LLFMDEATASVDSQTDAEIQRIIREEFAA---CTIISIAHRIP-TVMDCDRVIVVDAG 1478
L +DE T+++D + R+ R + A +I + H + DR++++ G
Sbjct: 161 WLLLDEPTSALDLAHQHHVLRLAR-QLAHERGLAVIVVLHDLNLAARYADRIVLLHQG 217
|
Length = 258 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 47/240 (19%)
Query: 629 VNESVERV--EGCDDNIAVEVRDGVFSWDDENGEE-CLKNINLEIKKGDLTAIVGTVGSG 685
ES E+ E D + + V D G++ LK ++++I + +TA++G G G
Sbjct: 24 SGESDEQTRDEWTDYEFDGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCG 83
Query: 686 KSSLLASILGEMH------KISGKVKVCGTTAY---------------VAQTSWIQNGTI 724
KS+ L L M+ +I G V++ G Y V Q+ +I
Sbjct: 84 KSTFLRC-LNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSI 142
Query: 725 EENILFGLPMNRAKYGEVVRVCC---------------LEKDLEMMEYGDQTE--IGERG 767
ENI +G P K+G++ +E+ L D+ + +
Sbjct: 143 RENISYG-P---RKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNA 198
Query: 768 INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTH 827
+ LSGGQ+QR+ +AR + D ++ L+D+ SA+D S I ++ + + T+++VTH
Sbjct: 199 LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKI-EDLIEELAEEYTVVVVTH 257
|
Length = 305 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 24/214 (11%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDG------------- 1330
VL G+ S+ GEK+ ++G +GSGKST++++ L G+I ++G
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 1331 IDISLLGLHDLRSRFGIIPQEPVLF-EGTVRSNID--PIGQYSDEEIWKSLERCQLKDVV 1387
+ L +R++ G++ Q LF TV N+ P+ +L D+V
Sbjct: 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMV 134
Query: 1388 AAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII 1447
DK D + A S GQ+Q + + R + +++ DE T+++D + E+ +I
Sbjct: 135 GLA-DKADHMPA----QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVI 189
Query: 1448 REEFAA--CTIISIAHRIPTVMD-CDRVIVVDAG 1478
R + T++ + H + + DRV D G
Sbjct: 190 RRLASEHDLTMLLVTHEMGFAREFADRVCFFDKG 223
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 2e-09
Identities = 52/199 (26%), Positives = 95/199 (47%), Gaps = 37/199 (18%)
Query: 660 EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW- 718
++ +KN+NL++++G + A++G G GK++ L +I MH ++ +V G Q +
Sbjct: 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAI-NRMHDLTPGARVTGRILLDGQDIYG 75
Query: 719 ---------------------IQNGTIEENILFGLPM----NRAKYGEVVRVCCLEKDLE 753
++ +N++ GL + +R EV E+ L
Sbjct: 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVA-----ERSLR 130
Query: 754 MMEYGDQTE--IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKE 811
D+ + + LSGGQ+QR+ +ARA+ + +I L+D+ SA+D + + I E
Sbjct: 131 GAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI--E 188
Query: 812 CVRGALKG-KTIILVTHQV 829
+ LK TII+VTH +
Sbjct: 189 DLMTDLKKVTTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 2e-09
Identities = 49/200 (24%), Positives = 96/200 (48%), Gaps = 16/200 (8%)
Query: 1280 NTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSG-----GRIIIDGIDI- 1333
+T +L+G+++ I+ + ++G +G GKST ++ R+ E GR+ +I
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIY 77
Query: 1334 -SLLGLHDLRSRFGIIPQEPVLFEGTVRSNI----DPIGQYSDEEIWKSLERCQLKDVVA 1388
+ L+ LR + ++ +P LF +V N+ +G EI +E LKD A
Sbjct: 78 ERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESA-LKD--A 134
Query: 1389 AKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR 1448
D++ + S + S GQ+Q LC+ R + ++L MDE +D +++ +I+
Sbjct: 135 DLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQ 194
Query: 1449 EEF--AACTIISIAHRIPTV 1466
+ T++ ++H + V
Sbjct: 195 SLRLRSELTMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 23/178 (12%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD---L 1341
L+G+T + GE + G +G+GKSTL+++ + PS G+I G DI+ L + L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 1342 RSRFGIIPQE-PVLFEGTVRSNID-P--IGQYSDEEIWKSLERCQLKDVVAAKPDKLDSL 1397
R + G+I Q+ +L + TV N+ P I S ++I + V+A DK+ L
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR---------VSAALDKVGLL 128
Query: 1398 VADSGDNWSV----GQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF 1451
D N+ + G++Q + + R ++ +L DE T ++D I R+ EEF
Sbjct: 129 --DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLF-EEF 183
|
Length = 222 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 2e-09
Identities = 46/217 (21%), Positives = 96/217 (44%), Gaps = 35/217 (16%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWI--- 719
+ NI+ E+ G++ ++G G+GK++ ILG + G++ G + I
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYL 77
Query: 720 -------QNGTIEENILF-----GLPMNRAKYGEVVRVCCLEKDLEMMEY-GDQTEIGER 766
T+E+ + + G+P + ++ + LE++ + +
Sbjct: 78 PEERGLYPKMTVEDQLKYLAELKGMPKAEIQ----KKLQAWLERLEIVGKKTKKIK---- 129
Query: 767 GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRG-ALKGKTIILV 825
LS G +Q+IQ AV + ++ +LD+ FS +D ++ K+ + +G TII
Sbjct: 130 --ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDP-VNVELLKDAIFELKEEGATIIFS 186
Query: 826 THQVDFLHNV----DLILVMREGMIVQSGRYNALLNS 858
+H+ + +V D +L++++G V G + S
Sbjct: 187 SHR---MEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220
|
Length = 300 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 35/193 (18%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------TTAYVA 714
E LK I+ I+KG++ +G G+GK++ L + G + SG+V+V G ++
Sbjct: 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLR 94
Query: 715 QTSWI--QNGTIEENI--LFGLPMNRAKYG-------EVVRVCCLEKDLEMMEYGDQTEI 763
+ + Q + ++ + + A Y + + E+++ + +
Sbjct: 95 RIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELS-----ELLDLEELLDT 149
Query: 764 GERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK----- 818
R LS GQ+ R ++A A+ + +I LD+ +D +E +R LK
Sbjct: 150 PVR--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA-----QENIRNFLKEYNRE 202
Query: 819 -GKTIILVTHQVD 830
G T++L +H +
Sbjct: 203 RGTTVLLTSHYMK 215
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 57.4 bits (138), Expect = 2e-09
Identities = 34/177 (19%), Positives = 58/177 (32%), Gaps = 46/177 (25%)
Query: 672 KGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILFG 731
G++ IVG GSGK++L ++ E+ G V + + I
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII------- 53
Query: 732 LPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIY 791
+G + + SG + R+ LA A D+
Sbjct: 54 -------------------------------VGGKKASGSGELRLRLALALARKLKPDVL 82
Query: 792 LLDDVFSAVDAHTGSDIFKECVRGALK------GKTIILVTHQVDFLHNVDLILVMR 842
+LD++ S +DA + + L T+IL T+ L +L R
Sbjct: 83 ILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLG--PALLRRR 137
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 41/194 (21%)
Query: 665 NINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI------SGKVKVCGTTAYVAQTSW 718
++NL I+ +TA +G G GKS++L + L MH++ G+V + G Y
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRT-LNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80
Query: 719 I----QNG------------TIEENILFGLPMN----RAKYGEVVRVCCLEKDLEMMEYG 758
+ G +I +N++ GL +N + E+V EK L
Sbjct: 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELV-----EKSLRGANLW 135
Query: 759 DQTEIGER----GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR 814
+ E+ +R G LSGGQ+QR+ +ARA+ + D+ L+D+ SA+D S + E +
Sbjct: 136 N--EVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPI--STLAIEDLI 191
Query: 815 GALKGK-TIILVTH 827
LK TI++VTH
Sbjct: 192 NELKQDYTIVIVTH 205
|
Length = 258 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 63/223 (28%), Positives = 99/223 (44%), Gaps = 39/223 (17%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGK--------------- 703
G + LKNIN+ + + +TA++G G GKS+ L MH +
Sbjct: 28 GYQALKNINMMVHEKQVTALIGPSGCGKSTFL-RCFNRMHDLYPGNHYEGEIILHPDNVN 86
Query: 704 --------VKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMM 755
++V + V Q +I EN+ +GL + K R LE+ +E
Sbjct: 87 ILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVK-----RRSILEERVENA 141
Query: 756 EYGD------QTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIF 809
+ +G+ NLSGGQ+QR+ +ARA+ D +I L D+ SA+D + I
Sbjct: 142 LRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASI- 200
Query: 810 KECVRGALKGK-TIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
E + LK K TI++VTH + V D M G +++ G
Sbjct: 201 -EELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242
|
Length = 265 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 3e-09
Identities = 58/212 (27%), Positives = 103/212 (48%), Gaps = 39/212 (18%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------------ 710
+++L +KKG++ A++G G+GKS+L+ + G SG+++V G
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79
Query: 711 --AYVAQT-SWIQNGTIEENILFGLP------MNRAKYGEVVRVCCLEKDLEMME-YGDQ 760
V Q + T+ ENI+ GL ++R + R + E+ E YG
Sbjct: 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQ----AR----ARIKELSERYGLP 131
Query: 761 TEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-G 819
+ + +LS G++QR+++ +A+Y+ + +LD+ +AV +D E +R G
Sbjct: 132 VDPDAKVADLSVGEQQRVEILKALYRGARLLILDEP-TAVLTPQEADELFEILRRLAAEG 190
Query: 820 KTIILVTHQVDFLHNV----DLILVMREGMIV 847
KTII +TH+ L V D + V+R G +V
Sbjct: 191 KTIIFITHK---LKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 32/209 (15%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAY-----VAQTS 717
+ ++ +K G++T ++G G+GK++ L + G + +G V G +
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80
Query: 718 WIQNG--------TIEENI-----LFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIG 764
+ T EN+ L+GL + R+ L L M E D+
Sbjct: 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELT----ARLEELADRLGMEELLDR---- 132
Query: 765 ERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK--GKTI 822
R S G +Q++ +ARA+ D + LLD+ + +D + +E +R L+ GK I
Sbjct: 133 -RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDV-MATRALREFIR-QLRALGKCI 189
Query: 823 ILVTHQVDFLHNV-DLILVMREGMIVQSG 850
+ TH + + + D ++V+ G +V G
Sbjct: 190 LFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVF--FRLVEPSGGRIIIDGIDISLLGLHDL 1341
+LKG+ L+I GE ++G GSGKSTL + E + G I+ G DI+ L +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEE- 73
Query: 1342 RSRFGII--PQEPVLFEG 1357
R+R GI Q P G
Sbjct: 74 RARLGIFLAFQYPPEIPG 91
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-09
Identities = 39/185 (21%), Positives = 75/185 (40%), Gaps = 23/185 (12%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTS 717
+ ++ + G+ + G G GK++LL + G + SG+V+ GT +
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDE 70
Query: 718 WIQNG-------------TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIG 764
+N + EN+ F ++ + E L + ++
Sbjct: 71 PHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTI------EDALAAVGLTGFEDLP 124
Query: 765 ERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTII 823
LS GQ++R+ LAR +++LD+ +A+D G + +R L +G ++
Sbjct: 125 AA--QLSAGQQRRLALARLWLSRAPLWILDEPTTALDK-AGVALLAGLLRAHLARGGIVL 181
Query: 824 LVTHQ 828
L THQ
Sbjct: 182 LTTHQ 186
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-09
Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 40/219 (18%)
Query: 665 NINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT---------AYVAQ 715
++ +++G+ ++G G+GK++ L +LG H +G + +CG V
Sbjct: 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84
Query: 716 TSWIQN----GTIEENIL-----FGLPMNRAKYGEVVRVCCLEKDLEM--MEYGDQTEIG 764
N T+ EN+L FGL A+ V L LE +E ++G
Sbjct: 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAAR----ALVPPL---LEFAKLENKADAKVG 137
Query: 765 ERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTII 823
E LSGG K+R+ LARA+ D D+ +LD+ + +D ++ E +R L +GKTI+
Sbjct: 138 E----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMW-ERLRSLLARGKTIL 192
Query: 824 LVTHQVDFLHNV----DLILVMREGMIVQSGRYNALLNS 858
L TH F+ D + V+ EG + G +AL+ S
Sbjct: 193 LTTH---FMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228
|
Length = 306 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-09
Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 19/213 (8%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
+E+R+ F++ D + INL IK+G+L ++G GSGKS+L + G SG++
Sbjct: 323 LELRNVTFAYQDNGFS--VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
Query: 705 KVCGTT-------AYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEY 757
+ G Y S + + LF + G+ +EK LE ++
Sbjct: 381 LLDGKPVTAEQPEDYRKLFSAV----FTDFHLFDQLLGPE--GKPANPALVEKWLERLKM 434
Query: 758 GDQTEIGE---RGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECV- 813
+ E+ + + LS GQK+R+ L A+ ++ DI LLD+ + D H + ++ +
Sbjct: 435 AHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLP 494
Query: 814 RGALKGKTIILVTHQVDFLHNVDLILVMREGMI 846
GKTI ++H + + D +L MR G +
Sbjct: 495 LLQEMGKTIFAISHDDHYFIHADRLLEMRNGQL 527
|
Length = 547 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 3e-09
Identities = 52/198 (26%), Positives = 93/198 (46%), Gaps = 24/198 (12%)
Query: 1283 LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL--VEPSG---GRIIIDGIDISLLG 1337
LK I + +H + ++G +G GKST ++ F R+ + P G II+ ++++L
Sbjct: 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89
Query: 1338 LH----DLRSRFGIIPQEPVLFEGTVRSN------IDPIGQYS--DEEIWKSLERCQLKD 1385
++R R ++ Q+P F ++ N I + + S +E + +L L D
Sbjct: 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD 149
Query: 1386 VVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQR 1445
V D+L L N S GQ+Q LC+ R + +L DE T+++D A I+
Sbjct: 150 EVK---DRLGDLAF----NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEE 202
Query: 1446 IIREEFAACTIISIAHRI 1463
+I + TI+ + H +
Sbjct: 203 LISDLKNKVTILIVTHNM 220
|
Length = 265 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 3e-09
Identities = 52/181 (28%), Positives = 90/181 (49%), Gaps = 30/181 (16%)
Query: 1300 VVGRTGSGKSTLIQVFFRLVE--PS---GGRIIIDGIDI--SLLGLHDLRSRFGIIPQEP 1352
++G +G GKST ++ R+ + PS G ++ DG DI LR + G++ Q+P
Sbjct: 70 IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129
Query: 1353 VLFEGTVRSNIDPIGQYS------------DEEIWKSLERCQLKDVVAAKPDKLDSLVAD 1400
F ++ NI Y +E + KSL + L D V+ + DK + +
Sbjct: 130 NPFPKSIFDNI----AYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDK--NALGL 183
Query: 1401 SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIA 1460
SG GQ+Q LC+ R + +L +DE T+++D + A+I+ +I+E + TI+ +
Sbjct: 184 SG-----GQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVT 238
Query: 1461 H 1461
H
Sbjct: 239 H 239
|
Length = 286 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-09
Identities = 56/212 (26%), Positives = 104/212 (49%), Gaps = 27/212 (12%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG---LHD 1340
V+K I+ ++ GE +G+VG +GSGKST RL+ S G I DG + L L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLP 359
Query: 1341 LRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAA-KPDKLDSLVA 1399
+R R ++ Q+P S+++P + + +I + R + AA + ++ +++
Sbjct: 360 VRHRIQVVFQDP-------NSSLNP--RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVME 410
Query: 1400 DSG----------DNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR- 1448
+ G +S GQRQ + + R ++ L+ +DE T+S+D A+I +++
Sbjct: 411 EVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKS 470
Query: 1449 -EEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
++ + I+H + V C +VIV+ G
Sbjct: 471 LQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502
|
Length = 529 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 3e-09
Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 22/194 (11%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE-----PSGGRIIIDGIDI--SLLG 1337
L I L I+ + ++G +G GKST ++ R+ + G +++DG +I +
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 1338 LHDLRSRFGIIPQEPVLFEGTVRSN------IDPIGQYS--DEEIWKSLERCQLKDVVAA 1389
+ +LR R G++ Q+P F ++ N I I D+ + +L++ L D V
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEV-- 137
Query: 1390 KPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 1449
K D S + SG GQ+Q LC+ R + ++ MDE T+++D + +I+ ++ E
Sbjct: 138 KDDLKKSALKLSG-----GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVE 192
Query: 1450 EFAACTIISIAHRI 1463
TI+ + H +
Sbjct: 193 LKKEYTIVIVTHNM 206
|
Length = 251 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 4e-09
Identities = 52/195 (26%), Positives = 97/195 (49%), Gaps = 35/195 (17%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH------KISGKVKVCGTTAY---- 712
+K+++++ + +TAI+G G GKS++L SI MH +++GK+ + T Y
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSI-NRMHDLVPSARVTGKILLDDTDIYDRGV 78
Query: 713 --------VAQTSWIQNG----TIEENILFGLPMN----RAKYGEVVRVCCLEKDLEMME 756
V N +I +N++ G +N R++ E+V E L+ +
Sbjct: 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIV-----ESSLKRVA 133
Query: 757 YGDQTE--IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR 814
D+ + + + LSGGQ+QR+ +AR + ++ L+D+ SA+D + I +E +
Sbjct: 134 LWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKI-EELIE 192
Query: 815 GALKGKTIILVTHQV 829
+ TII+VTH +
Sbjct: 193 ELKEKYTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 4e-09
Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 21/186 (11%)
Query: 654 WDDENGE--ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTA 711
+ ++GE L NI+ E+ +G++ I+G GSGKS+L I G G V + G+ A
Sbjct: 29 FRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA 88
Query: 712 YVAQTSWIQNGTIE--ENI-LFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGI 768
+A +S + NG + ENI L GL M K E ++ E E++E+ D IG + I
Sbjct: 89 LIAISSGL-NGQLTGIENIELKGLMMGLTK--EKIK----EIIPEIIEFAD---IG-KFI 137
Query: 769 N-----LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTII 823
S G K R+ A +V+ + DI ++D+ S D + +GKTI
Sbjct: 138 YQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIF 197
Query: 824 LVTHQV 829
++H +
Sbjct: 198 FISHSL 203
|
Length = 549 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 5e-09
Identities = 52/188 (27%), Positives = 97/188 (51%), Gaps = 14/188 (7%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE--PS---GGRIIIDGIDI--SLLG 1337
LK I LSI E ++G +G GKST I+ +++ P+ G + +G +I +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 1338 LHDLRSRFGIIPQEPVLFEGTVRSNI--DPI--GQYSDEEIWKSLERCQLKDVVAAKPDK 1393
L +LR G++ Q+ F ++ N+ P G + +++ + +E+ LKDV A D+
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEK-SLKDV--ALWDE 144
Query: 1394 LDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAA 1453
+ + + S GQ+Q LC+ R + + +L MDE T+++D + +I+ +I +
Sbjct: 145 VKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEK 204
Query: 1454 CTIISIAH 1461
TI+ + H
Sbjct: 205 YTIVIVTH 212
|
Length = 259 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 5e-09
Identities = 65/278 (23%), Positives = 123/278 (44%), Gaps = 62/278 (22%)
Query: 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGK 703
A++V+D F + N + ++ I+++I + +TAI+G G GKS+ + L + ++ G
Sbjct: 7 AIKVKDLSFYY---NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFI-KTLNRISELEGP 62
Query: 704 VKVCGTTAYVAQTSW----------IQNG-----------TIEENILFGLPMN----RAK 738
VKV G + Q + Q G +I EN+ +G+ ++ +A
Sbjct: 63 VKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQAD 122
Query: 739 YGEVVRVCCLEKDLEMMEYGDQTE--IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDV 796
E+V E L+ + + + + + LSGGQ+QR+ +ARA+ + L+D+
Sbjct: 123 LDEIV-----ESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEP 177
Query: 797 FSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALL 856
SA+D + +E + TI +VTH + Q+ R +
Sbjct: 178 CSALDPIATMKV-EELIHSLRSELTIAIVTHNMQ-----------------QATRVS--- 216
Query: 857 NSGMDFGALVAAHETSM-ELVEVGKTMPSGNSPKTPKS 893
DF A + E+ + ++VE G T ++P ++
Sbjct: 217 ----DFTAFFSTDESRIGQMVEFGVTTQIFSNPLDSRT 250
|
Length = 259 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 5e-09
Identities = 54/213 (25%), Positives = 99/213 (46%), Gaps = 15/213 (7%)
Query: 1275 VRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDIS 1334
V + + L++ G+ ++ G G++G GSGKSTL+++ + P G + + G+D+
Sbjct: 7 VSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLH 66
Query: 1335 LLGLHDLRSRFGIIPQE-----PVLFEGTVRSNIDPIGQYSDEEIW--KSLERCQLKDVV 1387
L R ++ Q+ P+ TVR + +G+ +W S + D
Sbjct: 67 GLSRRARARRVALVEQDSDTAVPL----TVRDVV-ALGRIPHRSLWAGDSPHDAAVVDRA 121
Query: 1388 AAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII 1447
A+ + L L S G+RQ + + R + + +LL +DE T +D + E ++
Sbjct: 122 LARTE-LSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALV 180
Query: 1448 REEFA-ACTIISIAHRIPTVMD-CDRVIVVDAG 1478
RE A T+++ H + CD V+V+D G
Sbjct: 181 RELAATGVTVVAALHDLNLAASYCDHVVVLDGG 213
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 6e-09
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 45/233 (19%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV----------------KV 706
L ++ EI + IVG G+GKSS+L ++ + G++ KV
Sbjct: 1255 LHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKV 1314
Query: 707 CGTTAYVAQTSWIQNGTIEENILFGLPMN------------RAKYGEVVRVCCLEKDLEM 754
G + Q + +GT+ N+ P N RA +V+R L D E+
Sbjct: 1315 LGI---IPQAPVLFSGTVRFNLD---PFNEHNDADLWESLERAHLKDVIRRNSLGLDAEV 1368
Query: 755 MEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR 814
E G+ N S GQ+Q + LARA+ + I +LD+ +AVD T + I K +R
Sbjct: 1369 SEAGE---------NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKT-IR 1418
Query: 815 GALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALL-NSGMDFGALV 866
K T++++ H+++ + + D ILV+ G +V+ LL N G F +V
Sbjct: 1419 EEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMV 1471
|
Length = 1622 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 6e-09
Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 23/166 (13%)
Query: 1288 ITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347
++L+I+ GE ++G +G GKSTL+++ +P+ G+I++DG+D+S + + + +
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY--QRPINM 95
Query: 1348 IPQEPVLF-EGTVRSNID--------PIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLV 1398
+ Q LF TV NI P + + + + L +++ KP +L
Sbjct: 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-RVNEMLGLVHMQEFAKRKPHQL---- 150
Query: 1399 ADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 1444
S GQRQ + L R + K +LL +DE ++D + +Q
Sbjct: 151 -------SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQ 189
|
Length = 377 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 6e-09
Identities = 62/271 (22%), Positives = 118/271 (43%), Gaps = 56/271 (20%)
Query: 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGK 703
A++V + F +D + + L+ +++EI + +TAI+G G GKS+ L L M+++ +
Sbjct: 7 AIKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKC-LNRMNELESE 62
Query: 704 VKVCGTTAYVAQTSWIQNGTIEE-----NILFGLP-------MNRAKYGEVVRVC----- 746
V+V G + Q + + + +++ P + YG V++
Sbjct: 63 VRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYG--VKIVGWRPK 120
Query: 747 -----CLEKDLEMMEYGDQT--EIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSA 799
+E L+ + D+ +I + ++LSGGQ+QR+ +ARA+ + L+D+
Sbjct: 121 LEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFG 180
Query: 800 VDAHTGSDIFKECVRGALKGK-TIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNS 858
+D + L+ + T+++V+H LH V +
Sbjct: 181 LDPIASMKVESLIQSLRLRSELTMVIVSHN---LHQVSRL-------------------- 217
Query: 859 GMDFGALVAAHETSM-ELVEVGKTMPSGNSP 888
DF A +E + +LVE G T NSP
Sbjct: 218 -SDFTAFFKGNENRIGQLVEFGLTKKIFNSP 247
|
Length = 261 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 6e-09
Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 30/207 (14%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLR-S 1343
L G L+++ G + +VG G+GKST+++V + G I+ G +++ G + +
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79
Query: 1344 RFGIIPQEPVLF-EGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKL-------- 1394
GII QE L + T+ NI + E R K + A+ DKL
Sbjct: 80 GIGIIHQELNLIPQLTIAENI-----FLGREFVNRFGRIDWKKMY-AEADKLLARLNLRF 133
Query: 1395 --DSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ---RIIRE 1449
D LV + S+G++Q++ + +V+ S+++ MDE T D+ TD E + R+IRE
Sbjct: 134 SSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPT---DALTDTETESLFRVIRE 186
Query: 1450 -EFAACTIISIAHRIPTVMD-CDRVIV 1474
+ I+ I+HR+ + + CD V V
Sbjct: 187 LKSQGRGIVYISHRLKEIFEICDDVTV 213
|
Length = 501 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 6e-09
Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 45/224 (20%)
Query: 1288 ITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIII---DGIDISLLGLHD---- 1340
++ ++ GE +G+VG +GSGK+TL++ + P G + DG L + +
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERR 84
Query: 1341 --LRSRFGIIPQEP-------VLFEGTVRSNIDPIGQ--YSD--EEIWKSLERCQLKDVV 1387
LR+ +G + Q P V G + + IG Y + E LE V
Sbjct: 85 RLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEE------V 138
Query: 1388 AAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI---- 1443
D++D D +S G +Q L + R ++ RL+FMDE T +D A +
Sbjct: 139 EIDLDRID----DLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL 194
Query: 1444 QRIIREEFAACTIIS--------IAHRIPTVMDCDRVIVVDAGL 1479
+ ++RE A I++ +A R VM +V+ ++GL
Sbjct: 195 RGLVRELGLAVVIVTHDLAVARLLADR-LMVMKQGQVV--ESGL 235
|
Length = 258 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 7e-09
Identities = 53/207 (25%), Positives = 100/207 (48%), Gaps = 14/207 (6%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-TTAYVAQTSWIQN 721
L++IN+ I G+ IVG G+GKSSL + G++ + G A +
Sbjct: 1302 LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFK 1361
Query: 722 GTI--EENILFG--LPMNRAKYGE--------VVRVCCLEKDLEMMEYGDQTEIGERGIN 769
TI ++ +LF L MN + + + + L+ + + E E G N
Sbjct: 1362 ITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGEN 1421
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQV 829
LS GQ+Q + LARA+ + I +LD+ +AVD T ++ + +R + T++ + H++
Sbjct: 1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVDLET-DNLIQSTIRTQFEDCTVLTIAHRL 1480
Query: 830 DFLHNVDLILVMREGMIVQSGRYNALL 856
+ + + ++V+ +G + + G + LL
Sbjct: 1481 NTIMDYTRVIVLDKGEVAEFGAPSNLL 1507
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 7e-09
Identities = 53/203 (26%), Positives = 96/203 (47%), Gaps = 28/203 (13%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
+L+ +++S+ G+ V+G TGSGKSTL+Q E S GR+ + RS
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------RS 722
Query: 1344 RFGIIPQEPVLFEGTVRSNIDPIGQYSDEE----IWKSLERCQLKDVVAAKPDKLDSLVA 1399
+PQ+ + TVR NI + DEE + ++ QL+ +A L++ +
Sbjct: 723 -IAYVPQQAWIMNATVRGNI----LFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIG 777
Query: 1400 DSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF----AACT 1455
+ G N S GQ+ + L R + + + +D+ +++D+ +R++ E F A T
Sbjct: 778 EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVG---ERVVEECFLGALAGKT 834
Query: 1456 IISIAHRIPTVMDCDRVIVVDAG 1478
+ H++ V D V+ + G
Sbjct: 835 RVLATHQVHVVPRADYVVALGDG 857
|
Length = 1560 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 7e-09
Identities = 47/208 (22%), Positives = 79/208 (37%), Gaps = 42/208 (20%)
Query: 1290 LSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIP 1349
LS GE +G++G G+GK+TL++ L+ P+ G + + G G +P
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVP 55
Query: 1350 QE-------PVLFEGTV------------RSNIDPIGQYSDEEIWKSLERCQLKDVVAAK 1390
Q P+ TV R + D +L R L ++
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRD-----ALRRVGLTELADRP 110
Query: 1391 PDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREE 1450
+L S GQRQ + + R + +L +DE +D T + + E
Sbjct: 111 VGEL-----------SGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL 159
Query: 1451 FAA-CTIISIAHRIPTVMD-CDRVIVVD 1476
A I+ H + M CDRV++++
Sbjct: 160 AGAGTAILMTTHDLAQAMATCDRVVLLN 187
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 8e-09
Identities = 116/519 (22%), Positives = 201/519 (38%), Gaps = 50/519 (9%)
Query: 360 GKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSA 419
G+ S F G +L LL ++F + GM I L +L K L
Sbjct: 52 GQGSLFSFGGLCLLALLFRIGADIFPAY--------AGMHIIANLRIALCEKILGAPIEE 103
Query: 420 RQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGII 479
G ++ + D Q++ + + P I++AL + + C+ +V
Sbjct: 104 IDRRGAHNLIPLLTHDIDQINAFLF------IFP-PIAIALAIFFFCIAYLAYLSVPMFA 156
Query: 480 GVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNK-RILSF-- 536
+ +++GT K + + + I F A E + R LSF
Sbjct: 157 ITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAH 216
Query: 537 -RESEFGWLTKFMYSISGNIIVMWST------PVLISTLTFATALLFGVPLDAGSVFTTT 589
E ++ I I + +LI FA A+ + A S F
Sbjct: 217 GAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLA 276
Query: 590 TIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLS-----RELVNESVERVEGCDDNIA 644
++ ++ P+ ++ L+QA I+ RL + EL + V + +
Sbjct: 277 LLY--IKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKS 334
Query: 645 V---EVRDGVFSWDDENGEE--CLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK 699
V E++D + G E L I+L I +GD+ IVG G GKS+L G
Sbjct: 335 VDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP 394
Query: 700 ISGKVKVCGTTAYVAQT----SWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMM 755
G++ + G A A + + + + LF + GE + ++ L+ +
Sbjct: 395 QEGEILLDG-AAVSADSRDDYRDLFSAIFADFHLFD-DLIGPDEGEHASLDNAQQYLQRL 452
Query: 756 EYGDQTEIGERGIN----LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKE 811
E D+ +I + G + LS GQ++R+ L A +D I L D+ ++A F E
Sbjct: 453 EIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDE-WAADQDPAFKRFFYE 511
Query: 812 CVRGALK--GKTIILVTHQVDFLHNVDLILVMREGMIVQ 848
+ LK GKTII+++H + D I+ + G IV+
Sbjct: 512 ELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 8e-09
Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 41/182 (22%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVK--VCGTTAYVAQTSWIQ 720
LK+++ EIK GD I G G+GKSSL ++ G SG++ ++ Q ++
Sbjct: 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP 76
Query: 721 NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQL 780
GT+ E +++ P + LSGG++QR+
Sbjct: 77 LGTLREQLIY--PWDDV--------------------------------LSGGEQQRLAF 102
Query: 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDF--LHNVDLI 838
AR + LD+ SA+D + +++ G T+I V H+ H+ L
Sbjct: 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE---LGITVISVGHRPSLWKFHDRVLD 159
Query: 839 LV 840
L
Sbjct: 160 LD 161
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 8e-09
Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 45/221 (20%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI------SGKVKVCGTTAYVA 714
E +K +N +I +TAI+G G GKS+ L +I M+ + +G + G Y
Sbjct: 53 EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAI-NRMNDLIPSCHTTGALMFDGEDIYGK 111
Query: 715 QTSWIQ---------------NGTIEENILFGLPM----NRAKYGEVVRVCCLEKDLEMM 755
T + +I +NI +G + ++ + E+V EK L
Sbjct: 112 FTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIV-----EKSLRKA 166
Query: 756 EYGDQTEIGER----GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS---DI 808
D E+ +R + LSGGQ+QR+ +AR + + +I LLD+ SA+D + D+
Sbjct: 167 ALWD--EVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDL 224
Query: 809 FKECVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQ 848
+E +RG+ TI++VTH + V D + EG++V+
Sbjct: 225 IQE-LRGSY---TIMIVTHNMQQASRVSDYTMFFYEGVLVE 261
|
Length = 286 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 9e-09
Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 27/204 (13%)
Query: 1274 QVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDI 1333
V T +VL ++L I G ++G G+GKSTL+ + RL++ G I IDG+++
Sbjct: 6 NVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLEL 65
Query: 1334 SLLGLHDLRSRFGIIPQEPVL-FEGTVRSNIDPIGQY---------SDEE-IWKSLERCQ 1382
+ +L + I+ QE + TVR ++ G++ D I +++E
Sbjct: 66 TSTPSKELAKKLSILKQENHINSRLTVR-DLVGFGRFPYSQGRLTKEDRRIINEAIEYLH 124
Query: 1383 LKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAE 1442
L+D+ LD L SG GQRQ + V+ + + + +DE ++D + +
Sbjct: 125 LEDL---SDRYLDEL---SG-----GQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQ 173
Query: 1443 IQRIIR---EEFAACTIISIAHRI 1463
I +I+R +E TI+ + H I
Sbjct: 174 IMKILRRLADELGK-TIVVVLHDI 196
|
Length = 252 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 9e-09
Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 1283 LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE--PSG---GRIIIDGIDI--SL 1335
L L + L I + I +G +G GKSTL++ F R+ + P GR++ +I S
Sbjct: 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93
Query: 1336 LGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYS------DEEIWKSLERCQLKDVVAA 1389
+ LR + G++ Q P F ++ NI + + DE + SL R + + V
Sbjct: 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK- 152
Query: 1390 KPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 1449
DKL + G S GQ+Q LC+ R + +L MDE +++D + +++ + E
Sbjct: 153 --DKLK----EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE 206
Query: 1450 EFAACTIISIAHRI 1463
TII + H +
Sbjct: 207 LKEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 9e-09
Identities = 50/218 (22%), Positives = 91/218 (41%), Gaps = 26/218 (11%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------TTAYVA 714
E +++I+ EI KG++ +G G+GKS+ L + G + SGKV+V G Y+
Sbjct: 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR 97
Query: 715 QTSWI---QNGTI-EENILFGLPMNRAKY--GEVVRVCCLEKDLEMMEYGDQTEIGERGI 768
+ + + L L + + Y + L+ E+++ +
Sbjct: 98 SIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGF--LKWPVR 155
Query: 769 NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK------GKTI 822
LS GQ+ R +LA A+ + LD+ +D + +R LK T+
Sbjct: 156 KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV-----NAQANIREFLKEYNEERQATV 210
Query: 823 ILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLNSG 859
+L TH D + + D +L++ +G +V G L
Sbjct: 211 LLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248
|
Length = 325 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-08
Identities = 66/268 (24%), Positives = 118/268 (44%), Gaps = 30/268 (11%)
Query: 657 ENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------ 710
E G L++++ ++ G ++G GSGKS+LL+++L + G++++ G +
Sbjct: 1229 EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL-RLLSTEGEIQIDGVSWNSVTL 1287
Query: 711 -------AYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVC---CLEKDLEMMEYGDQ 760
+ Q +I +GT +N+ P + E+ +V L+ +E
Sbjct: 1288 QTWRKAFGVIPQKVFIFSGTFRKNL---DPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLD 1344
Query: 761 TEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGK 820
+ + G LS G KQ + LAR++ I LLD+ + +D T I ++ ++ +
Sbjct: 1345 FVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT-LQIIRKTLKQSFSNC 1403
Query: 821 TIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVEVGK 880
T+IL H+V+ L LV+ + Q LLN F ++A + K
Sbjct: 1404 TVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADRL-------K 1456
Query: 881 TMPSG--NSPKTPKSPQITSNLQEANGE 906
P NS K P+IT+ +EA E
Sbjct: 1457 LFPLHRRNSSKRKPQPKITALREEAEEE 1484
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 23/216 (10%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
D+ V +R N L+ + ++ GG +VG GSGKSTL + V + G+I I G
Sbjct: 11 DVTVTWR-NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQ 69
Query: 1332 DISLLGLHDLRSRFGIIPQE-------PVLFEGTVRSNIDPIGQYSDE---EIWKSLERC 1381
+L +PQ PVL E V +G+Y K +R
Sbjct: 70 PTRQALQKNL---VAYVPQSEEVDWSFPVLVEDVVM-----MGRYGHMGWLRRAKKRDR- 120
Query: 1382 QLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDA 1441
Q+ A+ D ++ G+ S GQ++ + L R + + +++ +DE VD +T+A
Sbjct: 121 QIVTAALARVDMVEFRHRQIGE-LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEA 179
Query: 1442 EIQRIIRE-EFAACTIISIAHRIPTVMD-CDRVIVV 1475
I ++RE T++ H + +V + CD ++V
Sbjct: 180 RIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV 215
|
Length = 272 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 1e-08
Identities = 43/191 (22%), Positives = 85/191 (44%), Gaps = 15/191 (7%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
DL V+ R +K ++ + GE +G+ G G+G+S L++ L +P+ GRI+++G
Sbjct: 262 DLSVKDRRGVT-AVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGK 320
Query: 1332 DISLLGLHDLRSRFGI--IPQEP-----VLFEGTVRSNIDPIGQYSDEEIWKS--LERCQ 1382
D+ R R G+ +P++ VL + ++ N+ +G++ + + L+R
Sbjct: 321 DVLGRLSPRERRRLGLAYVPEDRHGHGLVL-DLSLAENL-VLGRHDKKPFSRGGFLDRRA 378
Query: 1383 LKDVVAAKPDKLDSLVADSGD---NWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
++ ++ D + S G +Q L L R + + LL + T +D
Sbjct: 379 IRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGA 438
Query: 1440 DAEIQRIIREE 1450
I + E
Sbjct: 439 IEFIHERLLEL 449
|
Length = 501 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 26/189 (13%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL--VEPS---GGRI 1326
DL V Y N L ++L + E ++G +GSGKSTL++ R+ + P G I
Sbjct: 10 DLSVYY--NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI 67
Query: 1327 IIDGIDI--SLLGLHDLRSRFGIIPQEPVLFEGTVRSN------IDPI--GQYSDEEIWK 1376
+ +G +I DLR G++ Q+P F ++ N + I Q DE + K
Sbjct: 68 VYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEK 127
Query: 1377 SLERCQLKDVVAAKPDKL-DSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASV 1435
SL+ + D V D+L DS + SG GQ+Q +C+ RV+ +++ +DE T+++
Sbjct: 128 SLKGASIWDEVK---DRLHDSALGLSG-----GQQQRVCIARVLATSPKIILLDEPTSAL 179
Query: 1436 DSQTDAEIQ 1444
D + +I+
Sbjct: 180 DPISAGKIE 188
|
Length = 252 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 58/212 (27%), Positives = 102/212 (48%), Gaps = 32/212 (15%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDI--SLLGLHDL 1341
VL I L+I GE + ++G +GSGKSTL++ +L E + G +I+DG+ + + +
Sbjct: 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLI 75
Query: 1342 RSRFGIIPQEPVLF-EGTVRSNI--DPI---GQYSDEEIWKSLERCQLKDVVAAK----- 1390
R G++ Q+ LF T N+ P+ G +E + R L V A+
Sbjct: 76 RQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEA--EKQARELLAKVGLAERAHHY 133
Query: 1391 PDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR-- 1448
P +L SG GQ+Q + + R + +L+ DE T+++D + E+ ++++
Sbjct: 134 PSEL------SG-----GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDL 182
Query: 1449 -EEFAACTIISIAHRIPTVMDC-DRVIVVDAG 1478
EE T++ + H I R+I +D G
Sbjct: 183 AEE--GMTMVIVTHEIGFAEKVASRLIFIDKG 212
|
Length = 240 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 42/233 (18%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVK-----------V 706
G+ C ++++ ++ G++ IVG GSGKS+LL + G + G
Sbjct: 15 GGKGC-RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELY 73
Query: 707 CGTTA---YVAQTSWIQNGTIEENILFGLPMNRA---------------KYGEVVRVCCL 748
+ A + +T W G + +N GL M + YG +
Sbjct: 74 QLSEAERRRLMRTEW---GFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATA-- 128
Query: 749 EKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS-- 806
+ LE +E D T I + SGG +QR+Q+AR + + +D+ +D +
Sbjct: 129 QDWLEEVEI-DPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARL 187
Query: 807 -DIFKECVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLN 857
D+ + VR G +I+VTH + + +LVM++G +V+SG + +L+
Sbjct: 188 LDLLRGLVRDL--GLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (138), Expect = 1e-08
Identities = 52/194 (26%), Positives = 94/194 (48%), Gaps = 22/194 (11%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFR---LVE--PSGGRIIIDGIDI--SLLG 1337
L I + I ++G +G GKST ++ R LVE G +I +G +I +
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 1338 LHDLRSRFGIIPQEPVLFEGTVRSNID--------PIGQYSDEEIWKSLERCQLKDVVAA 1389
+ +LR + G++ Q P F ++ NI + DE + +SL++ L + V
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK- 141
Query: 1390 KPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 1449
DKL++ + + S GQ+Q LC+ R + ++ MDE T+++D + +I+ +I
Sbjct: 142 --DKLNT----NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIIN 195
Query: 1450 EFAACTIISIAHRI 1463
+ TII + H +
Sbjct: 196 LKESYTIIIVTHNM 209
|
Length = 254 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 1e-08
Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 33/213 (15%)
Query: 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH--- 698
I +E ++ + W E ++ L +INL I + +TA++G G GKS+ L L M+
Sbjct: 2 KIKMESKN-LNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFL-RCLNRMNDLI 57
Query: 699 ---KISGKVKVCGTTAY---------------VAQTSWIQNGTIEENILFGLPM----NR 736
KI G+V + G Y V Q +I +N+ +G + ++
Sbjct: 58 SNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDK 117
Query: 737 AKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDV 796
+ ++V L+K E D ++ + + LSGGQ+QR+ +AR + D+ L+D+
Sbjct: 118 KELDKIVE-WALKKAALWDEVKD--DLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEP 174
Query: 797 FSAVDAHTGSDIFKECVRGALKGKTIILVTHQV 829
SA+D + I ++ + K TI++VTH +
Sbjct: 175 TSALDPISTLKI-EDLMVELKKEYTIVIVTHNM 206
|
Length = 251 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 1e-08
Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 30/196 (15%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLL------------ASILGEMH------- 698
G L +++L+I + A +G G GKS+LL A + G +
Sbjct: 31 GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90
Query: 699 --KISGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMME 756
+I+ VK+ V Q +I ENI F P G + + +E L
Sbjct: 91 DSQINS-VKLRRQVGMVFQRPNPFPKSIYENIAFA-PRANGYKGNLDEL--VEDSLRRAA 146
Query: 757 YGDQTE--IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR 814
++ + + E+G LSGGQ+QR+ +ARA+ D+ L+D+ SA+D + + + C+
Sbjct: 147 IWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE 206
Query: 815 GALKGK-TIILVTHQV 829
LK + TII+VTH +
Sbjct: 207 --LKEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 19/170 (11%)
Query: 1283 LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLR 1342
+ I+L++ G++G G+GKSTL+++ ++ P+ G II DG + LH +
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKI- 72
Query: 1343 SRFGIIPQEPVLFEG-TVRSNIDPIGQ---YSDEEIWKSLERCQLKDVVAAKPDKLDSLV 1398
G + + P L+E T R N+ D I + L L + K K
Sbjct: 73 ---GSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTN-TGKKKAK----- 123
Query: 1399 ADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR 1448
+S+G +Q L + +L H +LL +DE T +D E++ +IR
Sbjct: 124 -----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIR 168
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-08
Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 29/188 (15%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVC---GTTAYVA 714
NG+ +++++ E+ G+ I G G GKSSL ILGE+ + G G YV
Sbjct: 463 NGDVLIESLSFEVPSGNNLLICGPNGCGKSSLF-RILGELWPVYGGRLTKPAKGKLFYVP 521
Query: 715 QTSWIQNGTIEENILF---GLPMNRAKYGEVVRVCCLEKDLE-MMEYGDQTEIGERGIN- 769
Q ++ GT+ + I++ M R + KDLE +++ T I ER
Sbjct: 522 QRPYMTLGTLRDQIIYPDSSEDMKRRGLSD--------KDLEQILDNVQLTHILEREGGW 573
Query: 770 ---------LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGK 820
LSGG+KQRI +AR Y +LD+ SAV +++ C G
Sbjct: 574 SAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGI 630
Query: 821 TIILVTHQ 828
T+ V+H+
Sbjct: 631 TLFSVSHR 638
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 40/187 (21%), Positives = 79/187 (42%), Gaps = 19/187 (10%)
Query: 1273 LQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSG---GRIIID 1329
L+ + + +L ++L + G+ + ++G +GSGK+TL+ VE G G+I+ +
Sbjct: 11 LKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFN 70
Query: 1330 GIDISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVA 1388
G + + Q+ +L G TVR + R + + V
Sbjct: 71 GQPRK---PDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV- 126
Query: 1389 AKPDKLDSLVADS--GDNW----SVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAE 1442
L +A + G N S G+R+ + + +L ++L +DE T+ +DS T
Sbjct: 127 -----LLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALN 181
Query: 1443 IQRIIRE 1449
+ + +
Sbjct: 182 LVSTLSQ 188
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-08
Identities = 64/250 (25%), Positives = 105/250 (42%), Gaps = 50/250 (20%)
Query: 646 EVRDGVFSWDDENGE-ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILG-----EMHK 699
+R+ ++ E G E +K I+ +I+ G+ A+VG GSGKS SILG
Sbjct: 8 SIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAH 67
Query: 700 ISGKVKVCGTTAYVAQ--------------------TSWIQNGTIEENILFGLPMNRAKY 739
SG + G A TS TI + + L ++R
Sbjct: 68 PSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLS 127
Query: 740 GEVVRVCCLEKDLEMMEYGDQTEIG----ERGIN-----LSGGQKQRIQLARAVYQDCDI 790
R + LE++E +G E+ ++ LSGGQ+QR+ +A A+ + D+
Sbjct: 128 RAAAR----ARALELLE-----LVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDL 178
Query: 791 YLLDDVFSAVDAHTGSDI---FKECVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMI 846
+ D+ +A+D + I KE G I+ +TH + + D + VM+ G I
Sbjct: 179 LIADEPTTALDVTVQAQILDLLKELQAE--LGMAILFITHDLGIVRKFADRVYVMQHGEI 236
Query: 847 VQSGRYNALL 856
V++G L
Sbjct: 237 VETGTTETLF 246
|
Length = 534 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 47/214 (21%), Positives = 94/214 (43%), Gaps = 30/214 (14%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTA----------- 711
L +++ ++ G A++G G+GKS+L + + G++ V G
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARL 76
Query: 712 -YVAQTSWIQ-NGTIEENILF-----GLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIG 764
V Q + + ++ +N+ + GL A+ R+ L L + E D
Sbjct: 77 GVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR----ARIAELLARLGLAERAD----- 127
Query: 765 ERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRG--ALKGKTI 822
++ L+GG ++R+++ARA+ + LLD+ +D + + I VR +G ++
Sbjct: 128 DKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAH-VRALARDQGLSV 186
Query: 823 ILVTHQVDFLHNVDLILVMREGMIVQSGRYNALL 856
+ TH VD + D ++V+ G ++ G L
Sbjct: 187 LWATHLVDEIEADDRLVVLHRGRVLADGAAAELR 220
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 23/178 (12%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLL---GLHD 1340
VL ++ SI GE + +VG +GSGKSTL+ + L P+ G +I +G +S L +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 1341 LRSR-FGIIPQ-EPVLFEGTVRSNID-P--IGQYSDEEIW-KSLERCQ---LKDVVAAKP 1391
LR++ G I Q +L + T N+ P IG+ EI ++LE L+ +P
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP 143
Query: 1392 DKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 1449
+L S G+RQ + + R ++ + RL+ DE T ++D++ I +++ E
Sbjct: 144 SEL-----------SGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGE 190
|
Length = 233 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 25/205 (12%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
+ I+ + GE G++G G+GK+T ++ L+EP+ G I +G +S ++++
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKN 72
Query: 1344 RFGIIPQEPVLFEG-TVRSNIDPIGQ---YSDEEIWKS----LERCQLKDVVAAKPDKLD 1395
R G +P+E L+ TV + + + EI K LER ++V K K+
Sbjct: 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLER---LEIVGKKTKKIK 129
Query: 1396 SLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS-QTDAEIQRIIREEFAAC 1454
L S G +Q + ++ LL +DE + +D + I +
Sbjct: 130 EL--------SKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA 181
Query: 1455 TIISIAHRIPTVMD-CDRVIVVDAG 1478
TII +HR+ V + CDR++++ G
Sbjct: 182 TIIFSSHRMEHVEELCDRLLMLKKG 206
|
Length = 300 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 48/213 (22%), Positives = 92/213 (43%), Gaps = 36/213 (16%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
LKGI+ +I GE +G +G G+GK+T +++ L++P+ G + + GL +
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGE-------VRVAGLVPWKR 88
Query: 1344 RFGIIPQEPVLF--EGTVRSNIDPIGQY---------SDEEIWKSLERC----QLKDVVA 1388
R + + V+F + + ++ I + K L+ L+++
Sbjct: 89 RKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-- 146
Query: 1389 AKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR 1448
LD+ V S+GQR + +L +LF+DE T +D I+ ++
Sbjct: 147 -----LDTPVR----QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLK 197
Query: 1449 EEFA--ACTIISIAHRIPTVMD-CDRVIVVDAG 1478
E T++ +H + + RV+V+D G
Sbjct: 198 EYNRERGTTVLLTSHYMKDIEALARRVLVIDKG 230
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 2e-08
Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 36/211 (17%)
Query: 1286 KGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRF 1345
+ I+ I GE +G +G G+GKST +++ L+ P+ G++ ++G D
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD------------- 87
Query: 1346 GIIPQEPVLFEGTVRSNIDPIGQYS----DEEIWKSLERCQL-KDVVAAK-PDKLDSLVA 1399
P E +RS +GQ D SLE +L ++ + ++LD L
Sbjct: 88 ---PFRRR--EEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTE 142
Query: 1400 ----DSGDNW-----SVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREE 1450
+ W S+GQR L +L ++LF+DE T +D A I+ ++E
Sbjct: 143 ILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY 202
Query: 1451 FAA--CTIISIAHRIPTVMD-CDRVIVVDAG 1478
T++ H + CDRV+++D G
Sbjct: 203 NEERQATVLLTTHIFDDIATLCDRVLLIDQG 233
|
Length = 325 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 48/221 (21%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASI-LGEMHKISGKVKVCGTTAYVAQTSWIQN 721
L +I L+ +G+ ++G G+GKSSLL + L EM + SG + + G ++T +
Sbjct: 18 LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGNHFDFSKTPSDKA 76
Query: 722 G--------------------TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQ- 760
T+++N L P RV L KD + + ++
Sbjct: 77 IRELRRNVGMVFQQYNLWPHLTVQQN-LIEAPC---------RVLGLSKD-QALARAEKL 125
Query: 761 ------TEIGER-GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS---DIFK 810
+R ++LSGGQ+QR+ +ARA+ + + L D+ +A+D + I +
Sbjct: 126 LERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIR 185
Query: 811 ECVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
E A G T ++VTH+V+ ++ M G IV+ G
Sbjct: 186 EL---AETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 44/208 (21%), Positives = 81/208 (38%), Gaps = 34/208 (16%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
+ G++ ++ GE + V G GSGK+TL+++ L P GR++++G L R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNG-----GPLDFQRD 69
Query: 1344 RFGIIPQEPVLFEG---------TVRSNID---PIGQYSDEEIWKSLERCQLKDVVAAKP 1391
+L+ G +V N+ SDE++ ++L R L
Sbjct: 70 ----SIARGLLYLGHAPGIKTTLSVLENLRFWHADH--SDEQVEEALARVGLNGFEDRPV 123
Query: 1392 DKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF 1451
+L S GQ++ + L R++L L +DE T ++D A +
Sbjct: 124 AQL-----------SAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC 172
Query: 1452 AACTIISIAHRIPTVMDCDRVIVVDAGL 1479
A ++ + + +D G
Sbjct: 173 ARGGMVVLTTHQDLGLSEAGARELDLGF 200
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 2e-08
Identities = 46/191 (24%), Positives = 90/191 (47%), Gaps = 17/191 (8%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL--------VEPSGGRIIIDGIDISLL 1336
LK +++ I ++G +G GKST I+ R+ +E G++ I+G DI
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIE---GKVSIEGEDIYEP 84
Query: 1337 GLH--DLRSRFGIIPQEPVLFEGTVRSNI--DPIGQYSDEEIWKSLERCQLKDVVAAKPD 1392
+ +LR G++ Q+P F ++ N+ P ++++ + L+ AA D
Sbjct: 85 DVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRS--AALWD 142
Query: 1393 KLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA 1452
+ + + S GQ+Q LC+ R + +++ DE T+++D + A I+ +I
Sbjct: 143 ETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK 202
Query: 1453 ACTIISIAHRI 1463
TI+ + H +
Sbjct: 203 DYTIVIVTHNM 213
|
Length = 258 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 62/215 (28%), Positives = 101/215 (46%), Gaps = 38/215 (17%)
Query: 667 NLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG---TTAYVAQ--TSWI-- 719
+L +++G+ AI+G G+GKS+LL I G + SG + + G TT ++ S +
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 720 QNG-----TIEENILFGL-------PMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERG 767
+N T+ +NI GL R K + R +E L + G+
Sbjct: 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-------GQ-- 129
Query: 768 INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFK----ECVRGALKGKTII 823
LSGGQ+QR+ LAR + ++ I LLD+ FSA+D ++ C L T++
Sbjct: 130 --LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQL---TLL 184
Query: 824 LVTHQV-DFLHNVDLILVMREGMIVQSGRYNALLN 857
+V+H + D LV+ +G I G + LL+
Sbjct: 185 MVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219
|
Length = 232 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 2e-08
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 3/155 (1%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
V + +T+ I G ++G G GKSTL++ RL+ P+ G + +DG I ++
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 1344 RFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAA--KPDKLDSLVADS 1401
R G++ Q + G+Y + ++ R + ++ V + + L S
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRW-RKEDEEAVTKAMQATGITHLADQS 140
Query: 1402 GDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVD 1436
D S GQRQ + V+ + + ++ +DE T +D
Sbjct: 141 VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 2e-08
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 14/82 (17%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIII-DGIDISLLGLHDLR 1342
+LK I+LS G KIGV+G G+GKSTL+++ + + G GI +
Sbjct: 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKV--------- 72
Query: 1343 SRFGIIPQEPVLFEG-TVRSNI 1363
G +PQEP L TVR N+
Sbjct: 73 ---GYLPQEPQLDPEKTVRENV 91
|
Length = 556 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 2e-08
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 18/185 (9%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDG- 1330
DL RY+ VLKG+ L G+VG G GKSTL L+ P G ++ G
Sbjct: 6 DLWFRYQDEP--VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK 63
Query: 1331 -IDISLLGLHDLRSRFGIIPQEP--VLFEGTVRSNI----DPIGQYSDEEIWKSLERCQL 1383
+D S GL LR + + Q+P +F + S+I +G E + E L
Sbjct: 64 PLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTL 123
Query: 1384 KDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI 1443
D + + L S GQ++ + + ++ +R L +DE TA +D ++
Sbjct: 124 VDAQHFRHQPIQCL--------SHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQM 175
Query: 1444 QRIIR 1448
IIR
Sbjct: 176 IAIIR 180
|
Length = 271 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 3e-08
Identities = 51/193 (26%), Positives = 94/193 (48%), Gaps = 27/193 (13%)
Query: 660 EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH------KISGKVKVCGTTAYV 713
++ LKN++++I K +TA++G G GKS+ + L M+ +I GKV + G Y
Sbjct: 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFI-RCLNRMNDLIKNCRIEGKVSIEGEDIYE 83
Query: 714 AQTSWIQ---------------NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYG 758
++ +I +N+ +G ++ A ++ V +E L
Sbjct: 84 PDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGV--VENALRSAALW 141
Query: 759 DQT--EIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGA 816
D+T + ++LSGGQ+QR+ +AR + I L D+ SA+D + + I ++ +
Sbjct: 142 DETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARI-EDLIMNL 200
Query: 817 LKGKTIILVTHQV 829
K TI++VTH +
Sbjct: 201 KKDYTIVIVTHNM 213
|
Length = 258 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 62/236 (26%), Positives = 95/236 (40%), Gaps = 62/236 (26%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK----ISGKVKVCGTTAYV 713
N E LK +NL I KG++ AI+G GSGKS+L I G H + G + G
Sbjct: 18 NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG--HPAYKILEGDILFKG----- 70
Query: 714 AQTSWIQNGTIEENILFGLPMNRAKYG-----------------EVVRVCC--------- 747
E+IL P RA G + +R+
Sbjct: 71 ------------ESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGL 118
Query: 748 LEKD-LEMMEY--------GDQTEIGERGIN--LSGGQKQRIQLARAVYQDCDIYLLDDV 796
E D LE +E G R +N SGG+K+R ++ + D ++ +LD+
Sbjct: 119 PELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDET 178
Query: 797 FSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNV--DLILVMREGMIVQSG 850
S +D I + + +IIL+TH L + D + VM+ G I+++G
Sbjct: 179 DSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234
|
Length = 252 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 4e-08
Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 52/224 (23%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------- 708
+ +N ++++G++ +G G+GK++ + + + SG +V G
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSI 68
Query: 709 ------TTAYVAQTSWIQNGTIEENI-----LFGLPMNRAKYGEVVRVCCLEKDLEMMEY 757
+ T EN+ L+GLP + A+ E+ E++E
Sbjct: 69 GIVPQYASVDEDLTGR-------ENLEMMGRLYGLPKDEAE----------ERAEELLEL 111
Query: 758 GDQTEIGERGI-NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGA 816
+ E +R + SGG ++R+ +A ++ D+ LD+ + +D T I+ +R A
Sbjct: 112 FELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDY-IR-A 169
Query: 817 LK--GKTIILVTH---QVDFLHNVDLILVMREGMIVQSGRYNAL 855
LK G TI+L TH + D L D I ++ G I+ G L
Sbjct: 170 LKEEGVTILLTTHYMEEADKL--CDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 4e-08
Identities = 57/272 (20%), Positives = 116/272 (42%), Gaps = 51/272 (18%)
Query: 614 ISLARLDKYMLSRELVNESVERVEGCDD---NIAVEVRDGVFSWDDENGEECLKNINLEI 670
+S + + M+ REL N E + EVR+ V S D + +++I+ +
Sbjct: 232 VSNDDIVRLMVGRELQNRFNAMKENVSNLAHETVFEVRN-VTSRDRKK----VRDISFSV 286
Query: 671 KKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT--------------TAYVAQ- 715
+G++ G VGSG++ L+ + G + G++++ G AY+ +
Sbjct: 287 CRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITES 346
Query: 716 ---TSWIQNGTIEENI-------------LFGL--PMNRAKYGEVVRVCCLEKDLEMMEY 757
+ N +I +N+ GL ++ + E R + L + +
Sbjct: 347 RRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQR-----ELLALKCH 401
Query: 758 GDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL 817
I E LSGG +Q++ +++ + ++ + D+ +D ++I+K + A
Sbjct: 402 SVNQNITE----LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD 457
Query: 818 KGKTIILVTHQVDFLHNV-DLILVMREGMIVQ 848
GK I++V+ ++ + V D I V EG + Q
Sbjct: 458 DGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 4e-08
Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 23/163 (14%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS---GGRIIIDGIDISLLGLHD 1340
+L + +I GE + ++G +G GKSTL+ + G + ++ + +L
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA- 75
Query: 1341 LRSRFGIIPQEPVLFEG-TVRSNI------DPIGQYSDEEIWKSLERCQLKDVVAAKPDK 1393
+ + GI+ Q+ +LF +V N+ G +LER L P
Sbjct: 76 -QRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPAT 134
Query: 1394 LDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVD 1436
L S GQR + L R +L + L +DE + +D
Sbjct: 135 L-----------SGGQRARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 4e-08
Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 28/188 (14%)
Query: 657 ENGEECL-KNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQ 715
E L ++ + G+ + G GSGK++LL + G ++G+V + G +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 716 TSWI--------QNG-----TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTE 762
S G ++ EN+ F E+ E +
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRF-----------WHADHSDEQVEEALARVGLNG 117
Query: 763 IGERGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGK 820
+R + LS GQ++R+ LAR + +++LD+ +A+D G F E + G +G
Sbjct: 118 FEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK-AGVARFAEAMAGHCARGG 176
Query: 821 TIILVTHQ 828
++L THQ
Sbjct: 177 MVVLTTHQ 184
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 5e-08
Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 1270 LIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVF--FRLVEPSGGRII 1327
+ DL V +LKG+ L++ GE ++G GSGKSTL E + G I+
Sbjct: 6 IKDLHVEVEGKKE-ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEIL 64
Query: 1328 IDGIDISLLGLHDLRSRFGIIP--QEPVLFEG 1357
DG DI L + R+R GI Q PV G
Sbjct: 65 FDGEDILELSPDE-RARAGIFLAFQYPVEIPG 95
|
Length = 251 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 5e-08
Identities = 55/216 (25%), Positives = 87/216 (40%), Gaps = 62/216 (28%)
Query: 1272 DLQVRYRSN--TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL------VEPSG 1323
+L V + T +KGI+ I GE + +VG +GSGKS L PS
Sbjct: 11 NLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPS- 69
Query: 1324 GRIIIDGIDISLLGLHDLR----SRFGIIPQEPVLFEGTVRSNIDPI------------- 1366
G I+ DG D+ LR ++ G+I QEP+ ++++P+
Sbjct: 70 GSILFDGEDLLAASERQLRGVRGNKIGMIFQEPM-------TSLNPLHTIGKQLAEVLRL 122
Query: 1367 -----GQYSDEEIWKSLERCQLKDV---VAAKPDKLDSLVADSGDNWSVGQRQLLCLGRV 1418
+ + LE + + + A P +L SG GQRQ RV
Sbjct: 123 HRGLSRAAARARALELLELVGIPEPEKRLDAYPHEL------SG-----GQRQ-----RV 166
Query: 1419 MLKHS-----RLLFMDEATASVDSQTDAEIQRIIRE 1449
M+ + LL DE T ++D A+I +++E
Sbjct: 167 MIAMALANEPDLLIADEPTTALDVTVQAQILDLLKE 202
|
Length = 534 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (134), Expect = 5e-08
Identities = 54/220 (24%), Positives = 105/220 (47%), Gaps = 28/220 (12%)
Query: 1277 YRSNTPLVLKG---ITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDI 1333
Y+ N+P + I L + G ++G TGSGKSTL+Q L++P+ G++ + I +
Sbjct: 11 YQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVV 70
Query: 1334 SLLG----LHDLRSRFGIIPQEP--VLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVV 1387
S + +R + G++ Q P LFE TV ++ + + E+ + +
Sbjct: 71 SSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDV----AFGPQNFGIPKEKAE---KI 123
Query: 1388 AAKPDKLDSLVADSGDNW-------SVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTD 1440
AA +KL+ +V + + W S GQ + + + ++ +L +DE TA +D +
Sbjct: 124 AA--EKLE-MVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKAR 180
Query: 1441 AEIQRIIRE-EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
E+ ++ + T++ + H + V D D V +++ G
Sbjct: 181 IEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKG 220
|
Length = 288 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 37/193 (19%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNG 722
LKN++L + G+ A+ G G+GKS+LL S+ SG++ V + +W+
Sbjct: 24 LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILV------RHEGAWVDLA 77
Query: 723 TIEENILFGLPMNRAKYGEVV-------RVCCLEKDLE-MMEYG--------------DQ 760
+ L + R G V RV LE E ++E G +
Sbjct: 78 QASPREV--LEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLAR 135
Query: 761 TEIGERGINL-----SGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRG 815
I ER +L SGG++QR+ +AR D I LLD+ +++DA + E +
Sbjct: 136 LNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDA-ANRQVVVELIAE 194
Query: 816 AL-KGKTIILVTH 827
A +G +I + H
Sbjct: 195 AKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 25/186 (13%)
Query: 1277 YRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLL 1336
+R T +K ++ ++ G+ + ++G GSGKSTL ++ ++EP+ G ++ID +
Sbjct: 21 FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLH-F 79
Query: 1337 GLHDLRS-RFGIIPQEPV-----------LFEGTVRSNIDPIGQYSDEEIWKSLERCQLK 1384
G + RS R +I Q+P + + +R N D + +++I ++L + L
Sbjct: 80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL 139
Query: 1385 -DVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI 1443
D + P L GQ+Q L L R ++ +++ DEA AS+D +++
Sbjct: 140 PDHASYYPHMLAP-----------GQKQRLGLARALILRPKVIIADEALASLDMSMRSQL 188
Query: 1444 QRIIRE 1449
++ E
Sbjct: 189 INLMLE 194
|
Length = 267 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 6e-08
Identities = 46/207 (22%), Positives = 92/207 (44%), Gaps = 19/207 (9%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------AYVAQT 716
LK++NL + G++ A++G G+GKS+L+ + G G + + AQ
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 717 ---------SWIQNGTIEENILFG-LPMNRAKYGEVVRVCCLEKDLEMM--EYGDQTEIG 764
S I T+ EN+ G + ++ + MM G + ++
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLD 140
Query: 765 ERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIIL 824
E+ NLS KQ +++A+ + D + ++D+ S++ +F + +G I+
Sbjct: 141 EKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVY 200
Query: 825 VTHQVDFLHNV-DLILVMREGMIVQSG 850
++H++ + + D VM++G V SG
Sbjct: 201 ISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 6e-08
Identities = 53/233 (22%), Positives = 93/233 (39%), Gaps = 37/233 (15%)
Query: 651 VFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH-----------K 699
VF EN L NI+ +K + I+G GSGKS+L+ G +
Sbjct: 30 VFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIY 89
Query: 700 ISGKVKVCGTTAYVAQTSWIQN---------------------GTIEENILFGLPMNRAK 738
I K I+N TIE++I+FG P+
Sbjct: 90 IGDKKNNHELITNPYSKK-IKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFG-PVALGV 147
Query: 739 YGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFS 798
+ + L M D + + LSGGQK+R+ +A + +I + D+ +
Sbjct: 148 KKSEAKKLA-KFYLNKMGLDD-SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTA 205
Query: 799 AVDAHTGSDIFKECVRGALKGKTIILVTHQVD-FLHNVDLILVMREGMIVQSG 850
+D ++ + + KT+ ++TH ++ L D ++VM +G I+++G
Sbjct: 206 GLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 6e-08
Identities = 41/149 (27%), Positives = 76/149 (51%), Gaps = 7/149 (4%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD-LR 1342
L ++L I+ GE + ++G G+GK+TL+ + GRI+ DG DI+ +R
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 1343 SRFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADS 1401
I+P+ +F TV N+ G +++ + ++ ++K V P + + +
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQE----RIKWVYELFPRLHERRIQRA 135
Query: 1402 GDNWSVGQRQLLCLGRVMLKHSRLLFMDE 1430
G S G++Q+L +GR ++ RLL +DE
Sbjct: 136 G-TMSGGEQQMLAIGRALMSQPRLLLLDE 163
|
Length = 237 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 6e-08
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 40/195 (20%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWI--- 719
L+N+++ I L + G GSGKS+L+ L SGK ++ ++ I
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA----SGKARLISFLPKFSRNKLIFID 66
Query: 720 QNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQ 779
Q + + L L + + T LSGG+ QR++
Sbjct: 67 QLQFLIDVGLGYLTLGQKL---------------------ST--------LSGGELQRVK 97
Query: 780 LARAVYQDCD--IYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHNVD 836
LA ++ + +++LD+ + + + E ++G + G T+IL+ H +D L + D
Sbjct: 98 LASELFSEPPGTLFILDEPSTGLH-QQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSAD 156
Query: 837 LILVMREGMIVQSGR 851
I+ G G+
Sbjct: 157 WIIDFGPGSGKSGGK 171
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (132), Expect = 7e-08
Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 27/225 (12%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVA--- 714
N + LK+I ++I + I+G GSGKS+LL + + K+KV G Y
Sbjct: 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDI 80
Query: 715 -----------------QTSWIQNGTIEENILFGLPMNRAKYG-EVVRVC--CLEKDLEM 754
Q + + +I +NI + L + K E+ ++ CL K
Sbjct: 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLW 140
Query: 755 MEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR 814
E D+ + LSGGQ+QR+ +ARA+ + L+D+ S +D I ++ +
Sbjct: 141 KEVYDR--LNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAI-EKLIT 197
Query: 815 GALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLNS 858
I++V+H + V D + + G +V+ G N + S
Sbjct: 198 ELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242
|
Length = 257 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 7e-08
Identities = 64/247 (25%), Positives = 113/247 (45%), Gaps = 33/247 (13%)
Query: 631 ESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLL 690
E+ + G +A+++ S+ D+ + ++ + G+ ++G G+GKS++
Sbjct: 28 EAKASIPGSMSTVAIDLAGVSKSYGDK---AVVNGLSFTVASGECFGLLGPNGAGKSTIA 84
Query: 691 ASILGEMHKISGKVKVCGT------------TAYVAQTSWI-QNGTIEENIL-----FGL 732
ILG +GK+ V G V Q + T+ EN+L FG+
Sbjct: 85 RMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM 144
Query: 733 PMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYL 792
+ E V LE +E + + LSGG K+R+ LARA+ D + +
Sbjct: 145 ---STREIEAVIPSLLE--FARLESKADARVSD----LSGGMKRRLTLARALINDPQLLI 195
Query: 793 LDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
LD+ + +D H I+ E +R L +GKTI+L TH ++ + D + V+ G + G
Sbjct: 196 LDEPTTGLDPHARHLIW-ERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEG 254
Query: 851 RYNALLN 857
R +AL++
Sbjct: 255 RPHALID 261
|
Length = 340 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 8e-08
Identities = 52/249 (20%), Positives = 105/249 (42%), Gaps = 54/249 (21%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------------ 710
L ++ E++ G++ +VG G+GKS+LLA + G M SG ++ G
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGSGSIQFAGQPLEAWSATELARH 73
Query: 711 -AYVAQTSWIQNGTIEENILFGLPM---------NRAKYGEVVRVCCLEKDLEMMEYGDQ 760
AY++Q ++ F +P+ ++ + + V + D+
Sbjct: 74 RAYLSQ---------QQTPPFAMPVWHYLTLHQPDKTRTELLNDVA------GALALDDK 118
Query: 761 TEIGERGIN-LSGGQKQRIQLARAVYQ-------DCDIYLLDDVFSAVDAHTGSDIFKEC 812
R N LSGG+ QR++LA V Q + LLD+ +++D S + +
Sbjct: 119 L---GRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLL 175
Query: 813 VRGALKGKTIILVTHQVDF-LHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHET 871
+G I++ +H ++ L + +++ G ++ SGR +L + L A+
Sbjct: 176 SALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPV----LAQAYGM 231
Query: 872 SMELVEVGK 880
+ +++
Sbjct: 232 NFRRLDIEG 240
|
Length = 248 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 9e-08
Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 36/214 (16%)
Query: 1288 ITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS-GGRIIIDG--IDI---------SL 1335
++ S+ GE +GV G G+G++ L+Q F G + I+G +DI +
Sbjct: 279 VSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGI 338
Query: 1336 LGLHDLRSRFGIIPQEPV--------LFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVV 1387
+ + R R GI+P V L + ID + + I +++R ++K
Sbjct: 339 AMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAE--LQIIGSAIQRLKVK--- 393
Query: 1388 AAKPD-KLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRI 1446
A P + L S G +Q L +++L + R+L +DE T VD EI ++
Sbjct: 394 TASPFLPIGRL--------SGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKL 445
Query: 1447 IREEFA-ACTIISIAHRIPTVMD-CDRVIVVDAG 1478
I + II ++ + V+ DRV+V+ G
Sbjct: 446 INQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEG 479
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 43/215 (20%), Positives = 98/215 (45%), Gaps = 33/215 (15%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------- 708
E ++ ++ +++G++ ++G G+GK++ + + + SG+ V G
Sbjct: 11 GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPRE 70
Query: 709 ---TTAYVAQTSWIQNG-TIEENI-----LFGLPMNRAKYGEVVRVCCLEKDLEMMEYGD 759
V Q + + T EN+ L+G+P + E+ E++++
Sbjct: 71 VRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERR----------ERIDELLDFVG 120
Query: 760 QTEIGERGI-NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK 818
E +R + SGG ++R+++AR++ ++ LD+ +D T + ++ E + +
Sbjct: 121 LLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVW-EYIEKLKE 179
Query: 819 --GKTIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
G TI+L TH ++ + D + ++ G I+ G
Sbjct: 180 EFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 1e-07
Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 26/231 (11%)
Query: 1266 GNVDLIDLQVRYRSNTPLVLKGI---TLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS 1322
++ L ++ Y TP K + +L+ + V+G TGSGKST+IQ+ L+
Sbjct: 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 1323 GGRIIIDGIDI-----SLLGLHDLRSRFGIIPQEP--VLFEGTVRSNI--DPIGQYSD-E 1372
G+ I+ I + + LR G++ Q P LF+ T+ +I P+ + +
Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124
Query: 1373 EIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEAT 1432
E +K + +L +V D V S S GQ++ + L ++ L +DE T
Sbjct: 125 EAYKKVP--ELLKLVQLPED----YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPT 178
Query: 1433 ASVDSQTDAE----IQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
+D + + + +R+ +E II + H + V+ D VIV+ G
Sbjct: 179 GGLDPKGEEDFINLFERLNKEY--KKRIIMVTHNMDQVLRIADEVIVMHEG 227
|
Length = 289 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 1e-07
Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 39/206 (18%)
Query: 1295 GEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG---LHDLRSRFGIIPQE 1351
GE + +VG +GSGKST + RLVE GG II +G I L L LR I Q+
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 1352 PVLF---EGTVRSNI-DPI-------GQYSDEEIWKSLERCQLKDVVAAK-PDKLDSLVA 1399
P TV +I +P+ G+ + + LER L A + P +
Sbjct: 410 PYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHE------ 463
Query: 1400 DSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII----REEFAACT 1455
+S GQRQ +C+ R + + +++ DEA +++D +I ++ R+ A
Sbjct: 464 -----FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYL 518
Query: 1456 IIS--------IAHRIPTVMDCDRVI 1473
IS I+HR+ VM +++
Sbjct: 519 FISHDMAVVERISHRV-AVMYLGQIV 543
|
Length = 623 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 52/230 (22%)
Query: 1283 LVLKGITLSIHGGEKIGVVGRTGSGKSTL---IQVFFRLVEPSGGRIIIDGIDISLLGLH 1339
L + + L + E + ++G G+GK+T+ + F++ P+GG I++ G I L H
Sbjct: 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQHIEGLPGH 75
Query: 1340 DLRSRFGIIP--QEPVLF-EGTVRSNI------------------DPIGQYSDEE----- 1373
+ +R G++ Q LF E TV N+ P + ++ E
Sbjct: 76 QI-ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRA 134
Query: 1374 -IWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEAT 1432
W LER L + N + GQ++ L + R M+ +L +DE
Sbjct: 135 ATW--LERVGLLE-----------HANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPA 181
Query: 1433 ASVDSQTDAEIQRII---REEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
A ++ + E+ +I R E T++ I H + VM DR+ VV+ G
Sbjct: 182 AGLNPKETKELDELIAELRNEHNV-TVLLIEHDMKLVMGISDRIYVVNQG 230
|
Length = 255 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 30/190 (15%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAY---------- 712
L +I + I K +TA++G G GKS+LL M+ + ++ G Y
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLL-RCFNRMNDLIPGCRITGDILYNGENIMDSGA 80
Query: 713 -----------VAQTSWIQNGTIEENILFGLPM----NRAKYGEVVRVCCLEKDLEMMEY 757
V Q +I EN+ +G + N+ +V L+ E
Sbjct: 81 DVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKS-LKGAALWDEV 139
Query: 758 GDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL 817
D+ + + ++LSGGQ+QR+ +AR + + ++ L+D+ SA+D + I ++ +
Sbjct: 140 KDR--LHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKI-EDLIEDLK 196
Query: 818 KGKTIILVTH 827
K T+I+VTH
Sbjct: 197 KEYTVIIVTH 206
|
Length = 253 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 2e-07
Identities = 55/212 (25%), Positives = 101/212 (47%), Gaps = 28/212 (13%)
Query: 665 NINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG---------TTAYVAQ 715
+++ I +G+ ++G G+GKS++ +LG + GK+ V G +
Sbjct: 22 DLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81
Query: 716 TSWIQN----GTIEENILFGLPMNRAKYGEVVRVCCLEKDL---EMMEYGD-QTEIGERG 767
N T+ EN+L +G + E + ++E+ +++ R
Sbjct: 82 VPQFDNLDPEFTVRENLLV--------FGRYFGMSTREIEAVIPSLLEFARLESKADVRV 133
Query: 768 INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVT 826
LSGG K+R+ LARA+ D + +LD+ + +D H I+ E +R L +GKTI+L T
Sbjct: 134 ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIW-ERLRSLLARGKTILLTT 192
Query: 827 HQVDFLHNV-DLILVMREGMIVQSGRYNALLN 857
H ++ + D + V+ G + GR +AL++
Sbjct: 193 HFMEEAERLCDRLCVLESGRKIAEGRPHALID 224
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 57/185 (30%), Positives = 85/185 (45%), Gaps = 34/185 (18%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG------ 1337
L ITL GE + ++G +G+GKS+L++V L P G + I G
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76
Query: 1338 LHDLRSRFGIIPQE----PVLFEGTVRSNI--DPI------GQYSDEEIWKSLERCQLKD 1385
+ +LR G++ Q+ P L TV+ N+ P + K LER +LK
Sbjct: 77 IRELRRNVGMVFQQYNLWPHL---TVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP 133
Query: 1386 VVAAKPDKLDSLVADSGDNWSVGQRQLLCLGR-VMLKHSRLLFMDEATASVDSQTDAEIQ 1444
P L SG GQ+Q + + R +M++ LLF DE TA++D + A+I
Sbjct: 134 YADRFPLHL------SG-----GQQQRVAIARALMMEPQVLLF-DEPTAALDPEITAQIV 181
Query: 1445 RIIRE 1449
IIRE
Sbjct: 182 SIIRE 186
|
Length = 242 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 47/208 (22%), Positives = 81/208 (38%), Gaps = 48/208 (23%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLL---ASILGEMHKISGKVKVCG----------- 708
LK+ + +K G++ ++G GSG S+LL A+ + G + G
Sbjct: 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82
Query: 709 -TTAYVAQTSW-IQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGER 766
YV++ T+ E + F L R K E VR
Sbjct: 83 GEIIYVSEEDVHFPTLTVRETLDFAL---RCKGNEFVRG--------------------- 118
Query: 767 GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR---GALKGKTII 823
+SGG+++R+ +A A+ + D+ +D+ T +I K C+R LK T +
Sbjct: 119 ---ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILK-CIRTMADVLKTTTFV 174
Query: 824 LVTH-QVDFLHNVDLILVMREGMIVQSG 850
+ + D +LV+ EG + G
Sbjct: 175 SLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 2e-07
Identities = 46/189 (24%), Positives = 91/189 (48%), Gaps = 18/189 (9%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSR 1344
L ++L + GE ++G G+GK+T++ V P G ++ G D++ L H + +R
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQI-AR 76
Query: 1345 FGIIP--QEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDK------LD 1395
GI Q+P +FE TV N++ + D+ ++ SL +L + ++ L
Sbjct: 77 AGIGRKFQKPTVFENLTVFENLE-LALPRDKSVFASL-FFRLSAEEKDRIEEVLETIGLA 134
Query: 1396 SLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQR---IIREEFA 1452
S GQ+Q L +G ++++ +LL +DE A + TD E ++ +++
Sbjct: 135 DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM---TDEETEKTAELLKSLAG 191
Query: 1453 ACTIISIAH 1461
+++ + H
Sbjct: 192 KHSVVVVEH 200
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 3e-07
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 12/90 (13%)
Query: 769 NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK------GKTI 822
LSGGQKQR+ +ARA+ + + L D+ SA+D T I + LK G TI
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE-----LLKDINRELGLTI 194
Query: 823 ILVTHQVDFLHNV-DLILVMREGMIVQSGR 851
+L+TH++D + + D + V+ G +V+ G
Sbjct: 195 VLITHEMDVVKRICDRVAVIDAGRLVEQGT 224
|
Length = 343 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-07
Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 28/209 (13%)
Query: 1230 ENRMVSVERIKQFTEI--PSEAAWKMEDRLPPPNWPAHGNV-DLIDLQVRYRSNTPLVLK 1286
++R+ +E+++ P E + R PPP V + ++ Y L+LK
Sbjct: 281 KSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGY-DGGRLLLK 339
Query: 1287 GITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIII-DGIDISLLGLHDLRSRF 1345
++ I G++I +VG G+GKSTL+++ + P G + + + + I H R
Sbjct: 340 DLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQH----RD 395
Query: 1346 GIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKS-LERCQLKDVVAAKPDKLDSLVAD-SGD 1403
+ P + VL + DE+ ++ L R + + V SG
Sbjct: 396 ELDPDKTVL------EELSEGFPDGDEQEVRAYLGRFGF------TGEDQEKPVGVLSG- 442
Query: 1404 NWSVGQRQLLCLGRVMLKHSRLLFMDEAT 1432
G++ L L +++L+ LL +DE T
Sbjct: 443 ----GEKARLLLAKLLLQPPNLLLLDEPT 467
|
Length = 530 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 66/271 (24%), Positives = 121/271 (44%), Gaps = 54/271 (19%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILG--EMHKISGK----VKVCGTTAY 712
G+E LKNI+ I++G++ I+G G+GKS L+ + G + SG+ V +C Y
Sbjct: 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGY 71
Query: 713 VAQTSWIQN------GTIEE------------------NILFGLPMNRAKYGEVVRVCCL 748
V + S + GT+E I L A YG+ + +
Sbjct: 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNV 131
Query: 749 EKDLEMMEYG------------DQTEIGER----GINLSGGQKQRIQLARAVYQDCDIYL 792
+ LE + Y + ++ R +LSGG+KQR+ LAR + ++ ++L
Sbjct: 132 LEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFL 191
Query: 793 LDDVFSAVDAHTGSDIFKECVRGALK--GKTIILVTHQVDFLHNV-DLILVMREGMIVQS 849
D+ +D T + + + A+K G +++L +H + + ++ D + + G I +
Sbjct: 192 ADEPTGTLDPQT-AKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEE 250
Query: 850 GRYNALLNSGMDFGALVAAHETSMELVEVGK 880
G + ++ M+ V+ E E VEVG+
Sbjct: 251 GTPDEVVAVFME---GVSEVEKECE-VEVGE 277
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 58/227 (25%), Positives = 108/227 (47%), Gaps = 18/227 (7%)
Query: 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISG 702
+++ V + +N L ++ E +KG + +G G+GKS+ + I G + SG
Sbjct: 1 MSIRVSSLTKLYGTQNA---LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSG 57
Query: 703 KVKVCGTTAYVAQTSWIQN-GTI-EENILF-------GLPMNRAKYGEVVRVCCLEKDLE 753
V+VCG +N G + E N L+ L YG ++ L++ +E
Sbjct: 58 SVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG--MKGQLLKQRVE 115
Query: 754 MM--EYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKE 811
M G + E ++ LS G +QR+ LA+A+ D + +LD+ + +D + +I +
Sbjct: 116 EMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI-RN 174
Query: 812 CVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLN 857
++ K KTIIL TH + + + D ++++ +G IV + + L
Sbjct: 175 VIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 25/210 (11%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL--VEPSG-- 1323
+D+ DL + Y S ++ + L+I +G +G GKST+++ R+ V P
Sbjct: 5 IDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARV 62
Query: 1324 -GRIIIDGIDISLLGLH--DLRSRFGIIPQEPVLFEG-TVRSNI----DPIGQYS----D 1371
G +++DG D+ G+ +R G++ Q P F ++R N+ G + D
Sbjct: 63 EGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLD 122
Query: 1372 EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEA 1431
E + KSL L + V D+LD G S GQ+Q LC+ R + +L MDE
Sbjct: 123 ELVEKSLRGANLWNEVK---DRLDK----PGGGLSGGQQQRLCIARAIAVEPDVLLMDEP 175
Query: 1432 TASVDSQTDAEIQRIIREEFAACTIISIAH 1461
+++D + I+ +I E TI+ + H
Sbjct: 176 CSALDPISTLAIEDLINELKQDYTIVIVTH 205
|
Length = 258 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 29/210 (13%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAY---------- 712
L N++L I++G+ ++G G GKS+L +LG G V G Y
Sbjct: 27 LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAF 86
Query: 713 ------VAQTSWIQ---NGTIEENILFGLPM-NRAKYGEVVRVCCLEKDLEMMEYGDQTE 762
V Q S T+ + I G P+ + E + + + L+M+ +
Sbjct: 87 RRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGL-RSED 143
Query: 763 IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK---G 819
+ LSGGQ QRI +ARA+ + +LD+ S +D + I + L+ G
Sbjct: 144 ADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR--KLQQAFG 201
Query: 820 KTIILVTHQVDFLHNV-DLILVMREGMIVQ 848
+ +TH + + + + VM +G IV+
Sbjct: 202 TAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 4e-07
Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 50/221 (22%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-----TAYV 713
G E LK I+ + G++ A++G G+GKS+L+ I G + SG +++ G T
Sbjct: 23 GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAK 82
Query: 714 AQTSWI----------QNGTIEENILFGLPMNRAKYGEVVRV-----CCLEKDLEM---- 754
A I N +++ENILFGLP +A ++ ++ C L DL+
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQL--DLDSSAGS 140
Query: 755 MEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR 814
+E D+ Q +++ R + +D I +LD+ +++ +F +R
Sbjct: 141 LEVADR---------------QIVEILRGLMRDSRILILDEPTASLTPAETERLFSR-IR 184
Query: 815 GAL-KGKTIILVTHQVDFLHNV----DLILVMREGMIVQSG 850
L +G I+ ++H+ L + D I VMR+G I SG
Sbjct: 185 ELLAQGVGIVFISHK---LPEIRQLADRISVMRDGTIALSG 222
|
Length = 510 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 4e-07
Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 20/205 (9%)
Query: 664 KNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------TTAYVAQTS 717
+N+ +EI G TAI+G G GKS+LL ++ M G V + G + VA+
Sbjct: 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83
Query: 718 WI--QNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLE-----MMEYGDQTEIGERGIN- 769
+ QN T +I + R +Y K+ E M+ T + ++ ++
Sbjct: 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDT 143
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFK---ECVRGALKGKTIILVT 826
LSGGQ+QR +A + Q+ I LLD+ + +D D+ + E R KG T+ V
Sbjct: 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE--KGYTLAAVL 201
Query: 827 HQVD-FLHNVDLILVMREGMIVQSG 850
H ++ ++ +REG IV G
Sbjct: 202 HDLNQACRYASHLIALREGKIVAQG 226
|
Length = 265 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 5e-07
Identities = 59/240 (24%), Positives = 103/240 (42%), Gaps = 54/240 (22%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL--VEPSGGRII-------------- 1327
VLK I+ +I GE +G++GR+G+GKS L+ V + EP+ GRII
Sbjct: 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74
Query: 1328 -------------------IDGIDISLLGLHDLRSRFGIIPQEPVLFEG--TVRSNI--- 1363
+D ++S +R R I+ Q G TV N+
Sbjct: 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEA 134
Query: 1364 -DPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKH 1422
+ IG E + ++++ L ++V +L + + S G++Q + L R + K
Sbjct: 135 LEEIGYEGKEAVGRAVD---LIEMV-----QLSHRITHIARDLSGGEKQRVVLARQLAKE 186
Query: 1423 SRLLFMDEATASVDSQTDAEIQRIIREEFAA--CTIISIAHRIPTVMD--CDRVIVVDAG 1478
L DE T ++D QT + + E A +++ +H P V++ D+ I ++ G
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH-WPEVIEDLSDKAIWLENG 245
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 52/219 (23%), Positives = 98/219 (44%), Gaps = 39/219 (17%)
Query: 664 KNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTA------------ 711
++++ ++ G++ IVG GSGK++LL I G + +G V
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82
Query: 712 --YVAQTSWIQNGTIEENILFGLPMNRA---------------KYGEVVRVCCLEKDLEM 754
+ +T W G + +N GL M + YG + R + LE
Sbjct: 83 RRRLLRTEW---GFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNI-RAEAQDW-LEE 137
Query: 755 MEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR 814
+E D I + SGG +QR+Q+AR + + +D+ +D + + + +R
Sbjct: 138 VEI-DLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLLR 195
Query: 815 GALK--GKTIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
G ++ G +++VTH + + D ++VM++G +V+SG
Sbjct: 196 GLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 62/238 (26%), Positives = 105/238 (44%), Gaps = 41/238 (17%)
Query: 645 VEVRDGVFSWDDENGEECL-KNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGK 703
V++R F+ G C+ NI+L + +G +TAI+G G GK++LL I G++ G+
Sbjct: 8 VDMRGVSFT----RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGE 63
Query: 704 VKVCG--------TTAYVAQ---TSWIQNG------TIEENILFGLPMNRAKYGEVVRVC 746
+ G + Y + + Q+G + +N+ + L + ++
Sbjct: 64 ILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHST 123
Query: 747 CLEKDLEMMEYGDQTEIGERGI------NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAV 800
+ K LE +G RG LSGG +R LARA+ + D+ + D+ F
Sbjct: 124 VMMK-LE--------AVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQ 174
Query: 801 DAHTGSDIFK--ECVRGALKGKTIILVTHQV-DFLHNVDLILVMREGMIVQSGRYNAL 855
D T + K + AL G T ++V+H V + L D ++ + IV G AL
Sbjct: 175 DPITMGVLVKLISELNSAL-GVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231
|
Length = 269 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 6e-07
Identities = 56/218 (25%), Positives = 101/218 (46%), Gaps = 41/218 (18%)
Query: 665 NINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQT-------- 716
N++LE+K+G++ IVGT G+GK++L I G + SG+V V +V T
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361
Query: 717 -------------SWIQNGTIEENIL--------FGLPMNRAKYGEVVRVCCLEKDLEMM 755
+ T+ +N+ L +A + EK E++
Sbjct: 362 RAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEIL 421
Query: 756 E-YGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR 814
+ Y D+ LS G++ R+ LA+ + ++ I +LD+ +D T D+ ++
Sbjct: 422 DKYPDE---------LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILK 472
Query: 815 GALK-GKTIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
+ +T I+V+H +DF+ +V D +MR+G IV+ G
Sbjct: 473 AREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG 510
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 6e-07
Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 28/194 (14%)
Query: 660 EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWI 719
+ + +I+++I+K +TA++G G GKS+ L SI M+ + + G Y I
Sbjct: 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSI-NRMNDLIPSARSEGEILYEGLN--I 90
Query: 720 QNGTI-------EENILFGLP-----------MNRAKYGEVVRVCCLEKDLE--MMEYGD 759
+ I E ++F P + KY R L++ +E + +
Sbjct: 91 LDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAAL 150
Query: 760 QTEIGER----GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRG 815
E+ +R ++LSGGQ+QR+ +AR + + LLD+ SA+D + + I +E +
Sbjct: 151 WDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI-EELITE 209
Query: 816 ALKGKTIILVTHQV 829
+ +II+VTH +
Sbjct: 210 LKEEYSIIIVTHNM 223
|
Length = 268 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 7e-07
Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 41/210 (19%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLL---GLHD 1340
+L G+ L + GE I ++G +GSGKSTL+ + L + S G + + G + +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 1341 LRSR--------FGIIP--------QEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLK 1384
LR++ F +IP + P L G S LE+ L
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQ-------SRNGAKALLEQLGLG 137
Query: 1385 DVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 1444
+LD L A S G++Q + L R +LF DE T ++D QT +I
Sbjct: 138 -------KRLDHLPA----QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIA 186
Query: 1445 RII---REEFAACTIISIAHRIPTVMDCDR 1471
++ E T+I + H + CDR
Sbjct: 187 DLLFSLNREHGT-TLILVTHDLQLAARCDR 215
|
Length = 228 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 8e-07
Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 40/236 (16%)
Query: 1273 LQVRYRSNTP---LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIID 1329
L + + L I+ + + ++G +GSGKSTL+ F L++ G I +
Sbjct: 27 LYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVG 86
Query: 1330 GIDIS----------------LLGLHDLRSRFGIIPQEP--VLFEGTVRSNI--DPI--G 1367
I I + +LR R ++ Q P LF+ T+ +I P+ G
Sbjct: 87 DIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALG 146
Query: 1368 QYSDEEIWKS---LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSR 1424
E + L + L DS + S S GQ++ + + ++
Sbjct: 147 VKKSEAKKLAKFYLNKMGLD----------DSYLERSPFGLSGGQKRRVAIAGILAIQPE 196
Query: 1425 LLFMDEATASVDSQTDAEIQRIIREEFAAC-TIISIAHRIPTVMD-CDRVIVVDAG 1478
+L DE TA +D + + E+ ++I + A T+ I H + V++ D VIV+D G
Sbjct: 197 ILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252
|
Length = 320 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 8e-07
Identities = 45/197 (22%), Positives = 80/197 (40%), Gaps = 49/197 (24%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASIL---GEMHKISGKVKVCG---------TT 710
L NI+ +K G LTA++G G+GK++LL +L I+G++ + G +T
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLL-DVLAGRKTAGVITGEILINGRPLDKNFQRST 81
Query: 711 AYVAQTS-WIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGIN 769
YV Q N T+ E + F L RG++
Sbjct: 82 GYVEQQDVHSPNLTVREALRFS--------------ALL-----------------RGLS 110
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQ- 828
+ Q++R+ + + I LD+ S +D+ +I + + A G+ I+ HQ
Sbjct: 111 VE--QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQP 168
Query: 829 -VDFLHNVDLILVMREG 844
D +L+++ G
Sbjct: 169 SASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 12/166 (7%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
L+ I L++ GE + V+G +G GK+TL+ + V G I +DG + G
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPG----AE 71
Query: 1344 RFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGD 1403
R + E +L V+ N+ Q + +E+ Q ++ K+ A+
Sbjct: 72 RGVVFQNEGLLPWRNVQDNVAFGLQLA------GVEKMQRLEIAHQMLKKVGLEGAEKRY 125
Query: 1404 NW--SVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII 1447
W S GQRQ + + R + + +LL +DE ++D+ T ++Q ++
Sbjct: 126 IWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLL 171
|
Length = 255 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 43/176 (24%), Positives = 83/176 (47%), Gaps = 35/176 (19%)
Query: 1289 TLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGID----------ISLLGL 1338
L++ GE++ ++G +G+GKSTL+ + + P+ G + ++G D +S+L
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML-- 76
Query: 1339 HDLRSRFGIIPQEPVLFEG-TVRSNI----DPIGQYSDEEIWKSLERCQLKDVVAAKPDK 1393
F QE LF TV NI +P + + +R +L + A+
Sbjct: 77 ------F----QENNLFSHLTVAQNIGLGLNPGLKLNAA------QREKLHAI--ARQMG 118
Query: 1394 LDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 1449
++ L+A S GQRQ + L R +++ +L +DE +++D E+ ++ +
Sbjct: 119 IEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQ 174
|
Length = 232 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-06
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLV----EPSGGRIIIDGIDI---SLLG 1337
L G++ ++ G+ + VVG +G GKSTL RL+ P+GG + G D+
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLA----RLLTMIETPTGGELYYQGQDLLKADPEA 86
Query: 1338 LHDLRSRFGIIPQEPVLFEGTVRSNIDP---IGQYSDE--EIWKSLERCQLKDVVAAKPD 1392
LR + I+ Q P +++P +GQ +E I SL + ++ A
Sbjct: 87 QKLLRQKIQIVFQNPY-------GSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMA 139
Query: 1393 KLDSLVADSGDNW----SVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI 1443
K+ L + D + S GQRQ + + R ++ ++ DE +++D A++
Sbjct: 140 KV-GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQV 193
|
Length = 327 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 1e-06
Identities = 52/206 (25%), Positives = 96/206 (46%), Gaps = 19/206 (9%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG----TTAYVA 714
G + +N+ + +TA +G G+GK++ L+ + G + SG V V G T
Sbjct: 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAV 1001
Query: 715 QTSW---------IQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGE 765
+ S + T+ E+ILF + + E LE + + + G + E
Sbjct: 1002 RQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQ----LEMEAMLEDTGLHHKRNE 1057
Query: 766 RGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILV 825
+LSGG ++++ +A A D + +LD+ S VD ++ I+ ++ G+TII+
Sbjct: 1058 EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLK-YRSGRTIIMS 1116
Query: 826 THQVDFLHNV-DLILVMREGMIVQSG 850
TH +D + D I ++ +G + SG
Sbjct: 1117 THHMDEADLLGDRIAIISQGRLYCSG 1142
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 55/218 (25%), Positives = 99/218 (45%), Gaps = 40/218 (18%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT-------AYVAQ 715
L +++ + G+L ++G G+GK++L+ I G+ G+V G T +A+
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 716 T---------SWIQNGTIEENI---------LFGLPMNRAKYGEVVRVCCLEKDLEMMEY 757
+ +N T+ EN+ +F R + E R+ ++ L +
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRI---DELLATIGL 137
Query: 758 GDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDD-VFSAVDAHTG--SDIFKECVR 814
GD E LS GQKQ +++ + QD + LLD+ V DA T +++ K
Sbjct: 138 GD--ERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS--- 192
Query: 815 GALKGK-TIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
L GK +I++V H + F+ + D + V+ EG ++ G
Sbjct: 193 --LAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEG 228
|
Length = 249 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 56/249 (22%), Positives = 102/249 (40%), Gaps = 40/249 (16%)
Query: 653 SWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTA- 711
E +K ++ +++G AI+G GSGKS+L + G + SG++ +
Sbjct: 19 GLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLH 78
Query: 712 ---YVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGI 768
Y ++ I+ + N R + G++ L+ L + + + ++
Sbjct: 79 FGDYSFRSKRIRMIFQDPNTSLN---PRLRIGQI-----LDFPLRLNTDLEPEQRRKQIF 130
Query: 769 N------------------LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFK 810
L+ GQKQR+ LARA+ I + D+ +++D S +
Sbjct: 131 ETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLIN 190
Query: 811 ECVRGALK-GKTIILVTHQVDFL-HNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAA 868
+ K G + I VT + + H D +LVM EG +V+ G +L S +
Sbjct: 191 LMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPL-------- 242
Query: 869 HETSMELVE 877
HE + L+E
Sbjct: 243 HELTKRLIE 251
|
Length = 267 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-06
Identities = 47/212 (22%), Positives = 89/212 (41%), Gaps = 32/212 (15%)
Query: 1288 ITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL------ 1341
I+ S+ GE +G+ G G+G+S L+++ + + G++ +DG I + D
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331
Query: 1342 -----RSRFGIIPQEPVLFEGTVRSNID--------PIGQYSDEEIWKSLERCQLKDVVA 1388
R GIIP +V NI+ G + ++ +
Sbjct: 332 LCPEDRKAEGIIPVH------SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNI 385
Query: 1389 AKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR 1448
P + ++ SG G +Q LGR + + +++ +DE T +D EI +I
Sbjct: 386 KTPSREQLIMNLSG-----GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIY 440
Query: 1449 EEFAA-CTIISIAHRIPTVMD-CDRVIVVDAG 1478
E A ++ ++ +P V+ DR++V+ G
Sbjct: 441 ELAAQGVAVLFVSSDLPEVLGVADRIVVMREG 472
|
Length = 501 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 27/82 (32%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQV 829
LSGGQ+QR+ +ARA+ + ++ L D+ SA+D ++ K A +G+T+++VTH++
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM 212
Query: 830 DFLHNV-DLILVMREGMIVQSG 850
F +V ++ + +G I + G
Sbjct: 213 GFARDVSSHVIFLHQGKIEEEG 234
|
Length = 256 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 50/187 (26%), Positives = 74/187 (39%), Gaps = 32/187 (17%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW 718
L ++L I G A+VG G GKS+ L +L + S + GT A +
Sbjct: 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKST-LLRLLAGLETPSAGELLAGT----APLAE 78
Query: 719 IQNGT--------------IEENILFGLPMN-RAKYGEVVRVCCLEKDLEMMEYGDQTEI 763
+ T + +N+ GL R + + L
Sbjct: 79 AREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD-----------RA 127
Query: 764 GERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTI 822
E LSGGQKQR+ LARA+ + LLD+ A+DA T ++ + G T+
Sbjct: 128 NEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTV 187
Query: 823 ILVTHQV 829
+LVTH V
Sbjct: 188 LLVTHDV 194
|
Length = 257 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 26/214 (12%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFF--RLVEPSGGRIIIDGIDISLLGLHDL 1341
+LKG+ L++ GE ++G GSGKSTL + E + G I+ G D+ L D
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL-EPDE 73
Query: 1342 RSRFGII--PQEPVLFEGT-----VRSNIDPIGQYSDEEIWKSLE-RCQLKDVVAAKPDK 1393
R+R G+ Q P G +RS ++ EE L+ LK +A
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALL--G 131
Query: 1394 LDSLVADSGDN--WSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII---- 1447
+D + N +S G+++ + ++ L +L +DE +DS D + +I+
Sbjct: 132 MDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDE----IDSGLDIDALKIVAEGI 187
Query: 1448 ---REEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
RE + II+ R+ + D V V+ G
Sbjct: 188 NRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDG 221
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 3e-06
Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 44/198 (22%)
Query: 1292 IHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQE 1351
I+ GE IG+VG G GK+T ++ +++P G + + + IS PQ
Sbjct: 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYK------------PQY 408
Query: 1352 -PVLFEGTVRSNIDPIGQYSDEEIWKS--LERCQLKDVVAAKPDKLDSLVAD-SGDNWSV 1407
++GTV + I +KS ++ QL+ + LD V D SG
Sbjct: 409 IKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERL-------LDKNVKDLSG----- 456
Query: 1408 GQRQLL----CLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR---EEFAACTIISIA 1460
G+ Q + CL R + L +DE +A +D + + + IR EE A T + +
Sbjct: 457 GELQRVAIAACLSR----DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREA-TALVVD 511
Query: 1461 HRIPTVMD--CDRVIVVD 1476
H I ++D DR++V +
Sbjct: 512 HDI-YMIDYISDRLMVFE 528
|
Length = 590 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 3e-06
Identities = 76/334 (22%), Positives = 129/334 (38%), Gaps = 58/334 (17%)
Query: 1156 VNGN--LRMDFHNNGSNEWLGFRLELLG--SFTFCLATLFMILLPSSIIKPENVGLSLSY 1211
V+G+ L++ F S++W F + ++G F F + L + K E +
Sbjct: 651 VDGDDYLKLSFQYYNSHKWRNFGI-IIGFTVFFFFVYILLTEFNKGAKQKGEIL------ 703
Query: 1212 GLSLNGVLFWAIYMSCFVENRMVSVER--IKQFTEIPSEAAWKMEDRLPPPNWPAHGNVD 1269
+ G L A + +E + T++ E+ + D
Sbjct: 704 -VFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESD-DVNDEKDMEKESGEDIFH 761
Query: 1270 LIDL--QVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+L +V+ + ++L + + G ++G +G+GK+TL+ V L E +I
Sbjct: 762 WRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNV---LAERVTTGVI 818
Query: 1328 IDGIDISLLGLHDLRSRF----GIIPQEPV-LFEGTVR-----------SNIDPIGQYSD 1371
G + L S F G + Q+ + L TVR + +
Sbjct: 819 TGGDRLV--NGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKME 876
Query: 1372 --EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVML--KHSRLLF 1427
EE+ K LE D V V G+ +V QR+ L +G V L K LLF
Sbjct: 877 YVEEVIKLLEMESYADAV----------VGVPGEGLNVEQRKRLTIG-VELVAKPKLLLF 925
Query: 1428 MDEATASVDSQTDAEIQRIIREEFAA-----CTI 1456
+DE T+ +DSQT I +++R+ CTI
Sbjct: 926 LDEPTSGLDSQTAWSICKLMRKLADHGQAILCTI 959
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 4e-06
Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 26/188 (13%)
Query: 656 DENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT----- 710
D + + L+ I+ + G L + G+ G+GK++LL I G ++ G++ +
Sbjct: 10 DYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDL 69
Query: 711 -AYVAQTSWI-------QNGTIEENILFGLPMNRAKYG--EVVRVCCLEKDLEMMEYGDQ 760
Y Q ++ T+ EN L+ + + G E+ R+ LE ++
Sbjct: 70 CTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDY------ 123
Query: 761 TEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGK 820
G+ LS GQK+++ L R ++LLD+ A+D + I + KG
Sbjct: 124 ----PCGL-LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGG 178
Query: 821 TIILVTHQ 828
++L +HQ
Sbjct: 179 AVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 4e-06
Identities = 51/193 (26%), Positives = 93/193 (48%), Gaps = 24/193 (12%)
Query: 673 GDLTAIVGTVGSGKSSLLASILGEMHK--ISGKV---------KVCGTTAYVAQTSWI-Q 720
G++ A++G GSGKS+LL ++ G + +G + ++ T +V Q +
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYP 153
Query: 721 NGTIEENILF----GLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGE---RGINLSGG 773
+ T+ E ++F LP + K +++ + +L + + + T IG RGI SGG
Sbjct: 154 HLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN-TIIGNSFIRGI--SGG 210
Query: 774 QKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVD--F 831
+++R+ +A + + + +LD+ S +DA + A KGKTI+ HQ
Sbjct: 211 ERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRV 270
Query: 832 LHNVDLILVMREG 844
D +LV+ EG
Sbjct: 271 YQMFDSVLVLSEG 283
|
Length = 659 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 4e-06
Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 54/226 (23%)
Query: 657 ENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI-SGKVKVCGTT----- 710
+ + +K I+L++ G+ +VG G GKS+LL + G + +I SG++ + G
Sbjct: 14 DGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG-LERITSGEIWIGGRVVNELE 72
Query: 711 ------AYVAQTSWIQN------GTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMM 755
A V QN ++ EN+ +GL M +A+ E RV + LE+
Sbjct: 73 PADRDIAMV-----FQNYALYPHMSVRENMAYGLKIRGMPKAEIEE--RVAEAARILELE 125
Query: 756 EYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRG 815
D+ + LSGGQ+QR+ + RA+ ++ ++L D+ S +DA +R
Sbjct: 126 PLLDR-----KPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAK---------LRV 171
Query: 816 ALK----------GKTIILVTH-QVDFLHNVDLILVMREGMIVQSG 850
++ T + VTH QV+ + D ++VM G+ Q G
Sbjct: 172 QMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIG 217
|
Length = 356 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 5e-06
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
++L +L Y L+LK I+L+I+ G++IG+VGR G+GKSTL+++ +EP G +
Sbjct: 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 1328 ID 1329
Sbjct: 59 WG 60
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-06
Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 45/218 (20%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------------ 710
L +++L + G +TA++G G GKS+LL + SG V +
Sbjct: 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR 77
Query: 711 -AYVAQTSWIQNG-TIEENILFGLPMNRAKY----GEVVRVCCLEKDLEMMEYG-DQTEI 763
A + Q G T+ E + +G R+ + G + +D + +QT I
Sbjct: 78 LALLPQHHLTPEGITVRELVAYG----RSPWLSLWGRLS-----AEDNARVNQAMEQTRI 128
Query: 764 GE----RGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKG 819
R +LSGGQ+QR LA + QD + LLD+ + +D + ++ + +G
Sbjct: 129 NHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQG 188
Query: 820 KTIILVTHQVDFLHNV-------DLILVMREGMIVQSG 850
KT++ V LH++ D ++V+ G ++ G
Sbjct: 189 KTVVTV------LHDLNQASRYCDHLVVLANGHVMAQG 220
|
Length = 255 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 57/238 (23%), Positives = 104/238 (43%), Gaps = 41/238 (17%)
Query: 665 NINLEIKKGDLTAIVGTVGSGKSSLLASILG----EMHKISGKVKVCGT----------- 709
++NL +K+G++ A+VG GSGKS +ILG + + SG++ + G
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 710 TAYVAQ---TSW-----IQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQT 761
A + Q T++ + N IE G +A+ ++ L D
Sbjct: 64 IATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQAR--ALILEALEAVGLP-----DPE 116
Query: 762 EIGER-GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR-GALKG 819
E+ ++ LSGG QR+ +A A+ + + D+ + +D + + K L G
Sbjct: 117 EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFG 176
Query: 820 KTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELV 876
I+L+TH + + + D + VM +G IV+ G + + HET+ +L+
Sbjct: 177 TGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN--------PKHETTRKLL 226
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 7e-06
Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 24/216 (11%)
Query: 654 WDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG----- 708
W E LK +NL+ +T +VG G GKS+L ++ G + G V G
Sbjct: 8 WFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDY 67
Query: 709 ------------TTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMME 756
T + I I+ +I F L E+ R + E +
Sbjct: 68 SKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITR-----RVDEALT 122
Query: 757 YGDQTEIGERGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRG 815
D + I LS GQK+R+ +A A+ LLD+ + +D + + R
Sbjct: 123 LVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI 182
Query: 816 ALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
+G +I+ +H +D ++ + D + V+R+G I+ G
Sbjct: 183 VAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 7e-06
Identities = 51/214 (23%), Positives = 100/214 (46%), Gaps = 38/214 (17%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-----TTAYVAQTS 717
+++++ ++ KG++ I G VG+ ++ ++ ++ G K +G + + G A A
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEA--- 320
Query: 718 WIQNG---TIEE----------NILF-GLPMNRAKYGEVVRVCC---LEKD----LEMME 756
I +G EE +I F L N Y V + ++ D ++ M
Sbjct: 321 -INHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMR 379
Query: 757 Y---GDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECV 813
G +T+IG +LSGG +Q++ + R + +I +LD+ +D +I++
Sbjct: 380 VKTPGHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIA 435
Query: 814 RGALKGKTIILVTHQV-DFLHNVDLILVMREGMI 846
A K K II+++ ++ + L D ILVM G++
Sbjct: 436 ELAKKDKGIIIISSEMPELLGITDRILVMSNGLV 469
|
Length = 491 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 8e-06
Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 25/214 (11%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ 720
+ L ++L I +G++ ++G G+GK++LL ++ G+ SG++ G QT+ I
Sbjct: 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIM 78
Query: 721 NG---------------TIEENI-LFGLPMNRAKYGE-VVRVCCLEKDLEMMEYGDQTEI 763
T+EEN+ + G R ++ E + V L L
Sbjct: 79 REAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRL-------HERR 131
Query: 764 GERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTII 823
+R +SGG++Q + + RA+ + LLD+ + IF + +G TI
Sbjct: 132 IQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIF 191
Query: 824 LVTHQVD-FLHNVDLILVMREGMIVQSGRYNALL 856
LV + L D V+ G +V +ALL
Sbjct: 192 LVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225
|
Length = 237 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 9e-06
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRI 1326
+ L ++ Y T V+KGI L + GE I +VG +G GKSTL+++ L + G I
Sbjct: 3 GLKLQAVRKSYDGKTQ-VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI 61
Query: 1327 IIDG 1330
I G
Sbjct: 62 WIGG 65
|
Length = 356 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 45/194 (23%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 1283 LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGG-----RIIIDGIDISLLG 1337
+ ++ + I E G +G +G GKST+++ R+ + G + G D+ G
Sbjct: 22 MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG 81
Query: 1338 LHDL--RSRFGIIPQEPVLFEGTVRSNID---PIGQYSD---EEIWKSLERCQLKDVVAA 1389
+ + R G++ Q+P F ++ N+ + +Y + + +L+ L D V
Sbjct: 82 VDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK- 140
Query: 1390 KPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 1449
DKL SG + S GQ+Q LC+ R + +L +DE +++D ++ ++ E
Sbjct: 141 --DKLKV----SGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVE 194
Query: 1450 EFAACTIISIAHRI 1463
TI + H +
Sbjct: 195 LKKDYTIALVTHNM 208
|
Length = 261 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 44/218 (20%)
Query: 1288 ITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP--SGGRIIIDGIDISLLGLHDL---- 1341
++ S+ GE +G+ G G+G++ L+Q F P G I IDG + +
Sbjct: 281 VSFSLRRGEILGIAGLVGAGRTELVQCLFG-AYPGRWEGEIFIDGKPVKIRNPQQAIAQG 339
Query: 1342 -------RSRFGIIPQEPV--------LFEGTVRSNIDPIGQYSDEE--IWKSLERCQLK 1384
R R GI+P V L T S ID + E I +S++R ++K
Sbjct: 340 IAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDD----AAELKTILESIQRLKVK 395
Query: 1385 DVVAAKPD-KLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI 1443
A P+ + L SG G +Q L + +L + ++L +DE T +D EI
Sbjct: 396 ---TASPELAIARL---SG-----GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEI 444
Query: 1444 QRIIREEFAA--CTIISIAHRIPTVMD-CDRVIVVDAG 1478
++I + II I+ +P V+ DRV+V+ G
Sbjct: 445 YKLI-NQLVQQGVAIIVISSELPEVLGLSDRVLVMHEG 481
|
Length = 506 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-05
Identities = 48/213 (22%), Positives = 85/213 (39%), Gaps = 40/213 (18%)
Query: 666 INLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTS-WIQNG-- 722
I+ ++ G++ + G VG+G+S L+ + G + +G+V + G + I+ G
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331
Query: 723 ---------------TIEENI---------LFGLPMNRAKYGEVVRVCCLEKDLEMMEYG 758
++ +NI G +N E + L +
Sbjct: 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADR--FIRSLNIKTPS 389
Query: 759 DQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK 818
+ I NLSGG +Q+ L R + +D + LLD+ +D +I+ A +
Sbjct: 390 REQLIM----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ 445
Query: 819 GKTIILVTHQVDFLHNV----DLILVMREGMIV 847
G ++ V+ L V D I+VMREG I
Sbjct: 446 GVAVLFVSSD---LPEVLGVADRIVVMREGRIA 475
|
Length = 501 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 46/201 (22%), Positives = 88/201 (43%), Gaps = 31/201 (15%)
Query: 673 GDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT--TAYVAQTSWIQNGTIEENILF 730
G LT ++G GSGKS+LL + G + +G V + G + + +E++
Sbjct: 27 GSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDT 86
Query: 731 GLPMN------------RAKYG-------EVVRVCCLEKDLEMMEYGDQTEIGERGIN-L 770
+P+ R+ + VV L E + + +R ++ L
Sbjct: 87 AVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRA-----LARTE---LSHLADRDMSTL 138
Query: 771 SGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVD 830
SGG++QR+ +ARA+ Q+ + LLD+ + +D + A G T++ H ++
Sbjct: 139 SGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN 198
Query: 831 FLHNV-DLILVMREGMIVQSG 850
+ D ++V+ G +V +G
Sbjct: 199 LAASYCDHVVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-05
Identities = 51/215 (23%), Positives = 95/215 (44%), Gaps = 31/215 (14%)
Query: 1263 PAHGNVDLIDLQVRYRSNTPLV-------LKGITLSIHGGEKIGVVGRTGSGKSTLIQVF 1315
P G V+ D +++ N PLV ++ ++ + G + + G G GKS+L ++
Sbjct: 440 PGRGIVEYQDNGIKF-ENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRIL 498
Query: 1316 FRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNI---DPIGQ---- 1368
L GGR+ + + +PQ P + GT+R I D
Sbjct: 499 GELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRR 547
Query: 1369 -YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLF 1427
SD+++ + L+ QL ++ + + S V D D S G++Q + + R+ +
Sbjct: 548 GLSDKDLEQILDNVQLTHIL--EREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI 605
Query: 1428 MDEATASVDSQTDAEIQRIIREEFAACTIISIAHR 1462
+DE T++V + + R+ RE T+ S++HR
Sbjct: 606 LDECTSAVSVDVEGYMYRLCRE--FGITLFSVSHR 638
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-05
Identities = 53/237 (22%), Positives = 106/237 (44%), Gaps = 38/237 (16%)
Query: 1272 DLQVRYRSNTPLV--LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGG----- 1324
+L + + + ++ ++ S+ GE + +VG +GSGKS RL+E +GG
Sbjct: 17 NLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCD 76
Query: 1325 --------RIIIDGIDISLLGLHDLR-SRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIW 1375
R +I+ + S + +R + +I QEP+ T + + +G E+I
Sbjct: 77 KMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPM----TSLNPVFTVG----EQIA 128
Query: 1376 KSLERCQ---LKDVVAAKPDKLD--------SLVADSGDNWSVGQRQLLCLGRVMLKHSR 1424
+S+ Q ++ + LD ++++ S G RQ + + +
Sbjct: 129 ESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPA 188
Query: 1425 LLFMDEATASVDSQTDAEIQRIIR--EEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
+L DE T ++D A+I ++I+ ++ + +I I H + V + DRV+V+ G
Sbjct: 189 VLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQG 245
|
Length = 623 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 41/202 (20%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIII--DGIDISLLGLH-- 1339
VL+ ++LS++ GE + + G +GSGKSTL++ + P G+I++ +G + L+
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 1340 ---DLR-------SRF-GIIPQ--------EPVLFEGTVRSNIDPIGQYSDEEIWKSLER 1380
++R S+F +IP+ EP+L G R + + L R
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREV-------ARAKAADLLTR 138
Query: 1381 CQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTD 1440
L P++L SL + +S G++Q + + R + +L +DE TAS+D+
Sbjct: 139 LNL-------PERLWSL---APATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNR 188
Query: 1441 AEIQRIIREEFAA-CTIISIAH 1461
A + +IRE A ++ I H
Sbjct: 189 AVVVELIREAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-05
Identities = 59/249 (23%), Positives = 108/249 (43%), Gaps = 42/249 (16%)
Query: 641 DNIAVE--VRDGVFSWD-DENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEM 697
+++ V ++ G D + I+L +++G +VG GSGKS+L ++L +
Sbjct: 280 EDLRVWFPIKGGFLRRTVDHL--RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLR-L 336
Query: 698 HKISGKVKVCGTT-------AYVAQTSWIQ------NG------TIEENILFGLPMNRAK 738
G+++ G +Q G T+ + I GL ++ K
Sbjct: 337 IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPK 396
Query: 739 YGEVVRVCCLEKDLE-MMEYG-DQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDV 796
R ++ +E + E G D SGGQ+QRI +ARA+ ++ LLD+
Sbjct: 397 LSAAER---DQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEP 453
Query: 797 FSAVDAHTGSDIFKECVRGALKGK---TIILVTHQVDFLHNV----DLILVMREGMIVQS 849
SA+D + + + +R L+ K + + ++H L V ++VMR+G IV+
Sbjct: 454 TSALDRSVQAQVL-DLLR-DLQQKHGLSYLFISHD---LAVVRALCHRVIVMRDGKIVEQ 508
Query: 850 GRYNALLNS 858
G A+ +
Sbjct: 509 GPTEAVFAN 517
|
Length = 534 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (113), Expect = 2e-05
Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 24/222 (10%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW 718
G+ L +++ +T+++G GSGK++ L ++ K+SG + G ++ +
Sbjct: 33 GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSG-YRYSGDVLLGGRSIF 91
Query: 719 IQNGTIE----ENILFGLP-------MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIG--- 764
+E +LF P M+ G K+ + TE+G
Sbjct: 92 NYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWD 151
Query: 765 -------ERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL 817
+ LSGGQ+Q + LAR + + ++ LLD+ SA+D T I +E +R
Sbjct: 152 AVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKI-EEFIRSLA 210
Query: 818 KGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLNS 858
T+I+VTH + + D + +G +V+ G L +S
Sbjct: 211 DRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
Length = 276 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 49/213 (23%), Positives = 96/213 (45%), Gaps = 35/213 (16%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASIL----------GEMHKISGKVKV-- 706
G + L I+LE++ G+ + G G+GKS+L+ IL GE++ +K
Sbjct: 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLM-KILSGVYPHGTWDGEIYWSGSPLKASN 71
Query: 707 ------CGTTAYVAQTSWIQNGTIEENILFG----LPMNRAKYGEVVRVC-CLEKDLEMM 755
G + + + ++ ENI G LP R Y + L ++L++
Sbjct: 72 IRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLD 131
Query: 756 EYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS---DIFKEC 812
+G+ G GGQ+Q +++A+A+ + + +LD+ S++ DI ++
Sbjct: 132 ADNVTRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL 187
Query: 813 VRGALKGKTIILVTHQVDFLHNV-DLILVMREG 844
G + ++H+++ + V D I V+R+G
Sbjct: 188 KA---HGVACVYISHKLNEVKAVCDTICVIRDG 217
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 26/221 (11%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKIS-GKVKVCGTT------- 710
G L ++L G +T ++G GSGKS+LL +LG S G++ +
Sbjct: 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLL-KMLGRHQPPSEGEILLDAQPLESWSSK 81
Query: 711 ------AYVAQTSWIQNG-TIEENILFG-LPMNRA--KYGEVVRVCCLEKDLEMMEYGDQ 760
AY+ Q G T+ E + G P + A ++G R EK E +
Sbjct: 82 AFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADR----EKVEEAISLVGL 137
Query: 761 TEIGERGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR-GALK 818
+ R ++ LSGG++QR +A V QD LLD+ SA+D D+ R +
Sbjct: 138 KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQER 197
Query: 819 GKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858
G T+I V H ++ D ++ +R G ++ G L+
Sbjct: 198 GLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRG 238
|
Length = 265 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-05
Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 52/211 (24%)
Query: 1272 DLQVRYRS--NTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL-----VEPSGG 1324
+L V +R V+ ++L I GE + +VG +GSGKS RL V G
Sbjct: 10 NLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSG 69
Query: 1325 RIIIDGIDISLL-----GLHDLR-SRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSL 1378
I G SLL L +R ++ +I QEP++ +++P+ +L
Sbjct: 70 DIRFHG--ESLLHASEQTLRGVRGNKIAMIFQEPMV-------SLNPL---------HTL 111
Query: 1379 ERCQLKDVV---------AAKPDKLDSL-----------VADSGDNWSVGQRQLLCLGRV 1418
E+ QL +V+ AA+ + L+ L + D S G+RQ + +
Sbjct: 112 EK-QLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMA 170
Query: 1419 MLKHSRLLFMDEATASVDSQTDAEIQRIIRE 1449
+L LL DE T ++D A+I +++RE
Sbjct: 171 LLTRPELLIADEPTTALDVSVQAQILQLLRE 201
|
Length = 529 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 33/209 (15%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT----------AY 712
+ NI+L + K + ++G G+GKS+LL I G + SG++ G +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSL 75
Query: 713 VAQTSWIQNGTIEENI-----LFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERG 767
+ +N T EN+ L GLP +R E++ D T G++
Sbjct: 76 IESPPLYENLTARENLKVHTTLLGLPDSRI--------------DEVLNIVDLTNTGKKK 121
Query: 768 I-NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRG-ALKGKTIILV 825
S G KQR+ +A A+ + +LD+ + +D G +E +R +G T+IL
Sbjct: 122 AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP-IGIQELRELIRSFPEQGITVILS 180
Query: 826 THQV-DFLHNVDLILVMREGMIVQSGRYN 853
+H + + D I ++ EG++ G+ N
Sbjct: 181 SHILSEVQQLADHIGIISEGVLGYQGKIN 209
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 44/238 (18%)
Query: 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISG 702
+ + S+D G + L +++L + G+L I+G G+GK++++ I G+ G
Sbjct: 1 PILYLEGLSVSFD---GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEG 57
Query: 703 KVKVCGT------TAYVA--------QT-SWIQNGTIEENILFGLPMNRAKYG------- 740
V GT +A Q + +N T+ EN+ LP +++ +
Sbjct: 58 SVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLS 117
Query: 741 --EVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDD-VF 797
E R+ E+ LE + D E LS GQKQ +++ + QD + LLD+ V
Sbjct: 118 AEEKDRI---EEVLETIGLAD--EADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVA 172
Query: 798 SAVDA---HTGSDIFKECVRGALKGK-TIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
D T ++ K L GK ++++V H ++F+ ++ D + V+ +G ++ G
Sbjct: 173 GMTDEETEKTA-ELLKS-----LAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEG 224
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 2e-05
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 7/180 (3%)
Query: 1301 VGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEG-TV 1359
+G G+GK+T + + L+ P+ G +++ G DI L +R G+ PQ +LF TV
Sbjct: 962 LGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE-TNLDAVRQSLGMCPQHNILFHHLTV 1020
Query: 1360 RSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419
+I Q +S E QL+ + L + + S G ++ L +
Sbjct: 1021 AEHILFYAQLKG----RSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAF 1076
Query: 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTV-MDCDRVIVVDAG 1478
+ ++++ +DE T+ VD + I ++ + + TII H + + DR+ ++ G
Sbjct: 1077 VGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQG 1136
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-05
Identities = 47/213 (22%), Positives = 100/213 (46%), Gaps = 37/213 (17%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT-AYVAQTSWIQN 721
L +I+ + + G + A++G G+GKS+LL + G +G + + G + + T+ +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 722 G--------------TIEENILFG-LPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGER 766
G T+ EN+ G LP K G V + ++ Y + ++
Sbjct: 80 GVAIIYQELHLVPEMTVAENLYLGQLP---HKGGIV--------NRRLLNYEAREQLEHL 128
Query: 767 GIN---------LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL 817
G++ LS GQ+Q +++A+A+ ++ + D+ S++ A +F+
Sbjct: 129 GVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188
Query: 818 KGKTIILVTHQVDFLHNV-DLILVMREGMIVQS 849
+G+ I+ V+H+++ + + D I V ++G V +
Sbjct: 189 EGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221
|
Length = 501 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 52/226 (23%), Positives = 103/226 (45%), Gaps = 40/226 (17%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILG--EMHKISGKVKVCGTT------ 710
+ L+ +NLE++ G++ AI+G GSGKS+L A++ G + G V+ G
Sbjct: 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSP 72
Query: 711 ------------AYVAQTSWIQNGTIEENILFGL-------PMNRAKYGEVVRVCCLEKD 751
Y + + N + L + P++R + ++ +E+
Sbjct: 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDL-----MEEK 127
Query: 752 LEMMEYGDQTEIGERGINL--SGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIF 809
+ +++ ++ R +N+ SGG+K+R + + + ++ +LD+ S +D I
Sbjct: 128 IALLKM--PEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI-DALKIV 184
Query: 810 KECVRGALKGK-TIILVTHQVDFLHNV--DLILVMREGMIVQSGRY 852
+ V GK + I+VTH L + D + V+ +G IV+SG +
Sbjct: 185 ADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230
|
Length = 248 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-05
Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 46/205 (22%)
Query: 669 EIKKGDLTAIVGTVGSGKSSLLASILGEMHKISG---KVKVCGTTAYVAQT-SWIQNGTI 724
EI G++ I+G G GK++ + + G + G +KV +Y Q S +GT+
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKV----SYKPQYISPDYDGTV 418
Query: 725 EENILFGLPMNRAKYG------EVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRI 778
E+ R+ +G E+V+ LE LE LSGG+ QR+
Sbjct: 419 ED---LLRSAIRSAFGSSYFKTEIVKPLNLEDLLE-----------RPVDELSGGELQRV 464
Query: 779 QLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHNV-D 836
+A A+ ++ D+YLLD+ + +D + K R KT ++V H + + V D
Sbjct: 465 AIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSD 524
Query: 837 LILV----------------MREGM 845
++V MREGM
Sbjct: 525 RLIVFEGEPGKHGHASPPMSMREGM 549
|
Length = 591 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 4e-05
Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 44/199 (22%)
Query: 1291 SIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQ 1350
I+ GE IG++G G GK+T +++ +++P G + +S PQ
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEE--DLKVSYK------------PQ 408
Query: 1351 --EPVLFEGTVR---SNIDP---IGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSG 1402
P ++GTV + Y EI K L L+D+ L+ V
Sbjct: 409 YISPD-YDGTVEDLLRSAIRSAFGSSYFKTEIVKPL---NLEDL-------LERPV---- 453
Query: 1403 DNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR---EEFAACTIISI 1459
D S G+ Q + + + + + L +DE +A +D + + ++IR E ++ +
Sbjct: 454 DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALV-V 512
Query: 1460 AHRIPTVMD--CDRVIVVD 1476
H I ++D DR+IV +
Sbjct: 513 DHDI-YMIDYVSDRLIVFE 530
|
Length = 591 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 58/213 (27%), Positives = 91/213 (42%), Gaps = 47/213 (22%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------- 708
L + L +K+G+ A++G GSGKS+LLA + G SG+V + G
Sbjct: 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85
Query: 709 ---TTAYVAQTSWIQNGTIE--ENI-----LFGLPMNRAKYGEVVRVCCLEKDLEMMEYG 758
+V Q S++ T+ EN+ L G +++ ++E
Sbjct: 86 RAKHVGFVFQ-SFMLIPTLNALENVELPALLRGESSRQSR----------NGAKALLE-- 132
Query: 759 DQTEIGER----GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTG---SDIFKE 811
Q +G+R LSGG++QR+ LARA D+ D+ +D TG +D+
Sbjct: 133 -QLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFS 191
Query: 812 CVRGALKGKTIILVTHQVDFLHNVDLILVMREG 844
R G T+ILVTH + D L + G
Sbjct: 192 LNRE--HGTTLILVTHDLQLAARCDRRLRLVNG 222
|
Length = 228 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 5e-05
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 25/158 (15%)
Query: 1283 LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRI-IIDGIDISLLGLHDL 1341
++L I L++ G +IG++GR G+GKSTLI++ + P G I + GI + H L
Sbjct: 326 IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQL 385
Query: 1342 RSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAA---KPDKLDSLV 1398
+R++ P+ Q+ + LE+ +L+D + + DK V
Sbjct: 386 E---------------FLRADESPL-QHLARLAPQELEQ-KLRDYLGGFGFQGDK----V 424
Query: 1399 ADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVD 1436
+ +S G++ L L ++ + LL +DE T +D
Sbjct: 425 TEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
|
Length = 638 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 6e-05
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 9/81 (11%)
Query: 642 NIAVE--VRDG--VFSWDDEN----GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASI 693
+ VE R G VF ++ N G++ +K+ + ++++GD A++G G GK++LL +
Sbjct: 306 KMQVEEASRSGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLM 365
Query: 694 LGEMHKISGKVKVCGTTAYVA 714
LG++ SG++ CGT VA
Sbjct: 366 LGQLQADSGRIH-CGTKLEVA 385
|
Length = 635 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 37/193 (19%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNG 722
L+N++L + G+ + G GSGKS+LL S+ G++ V + W+
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILV------RHEGEWVDLV 80
Query: 723 TIEENILFGLPMNRAKYGEVV-------RVCCLEKDLE-MMEYGDQTEIGE-------RG 767
T E + L + R G V RV L+ E ++ G E+
Sbjct: 81 TAEPREV--LEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTR 138
Query: 768 INL------------SGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRG 815
+NL SGG++QR+ +AR D I LLD+ +++DA T + E +R
Sbjct: 139 LNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDA-TNRAVVVELIRE 197
Query: 816 A-LKGKTIILVTH 827
A +G ++ + H
Sbjct: 198 AKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 8e-05
Identities = 47/232 (20%), Positives = 104/232 (44%), Gaps = 53/232 (22%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW 718
G +++++L + G++ ++G G+GK++ ++G + + +G +
Sbjct: 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI-------------- 60
Query: 719 IQNGTIEENILFGLPMN-RAK------------------YGEVVRVCCLEKDLEMMEYGD 759
I++ + LP++ RA+ Y ++ V + DL + D
Sbjct: 61 ----IIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRED 116
Query: 760 QT-EIGER----------GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDI 808
+ E+ E G +LSGG+++R+++ARA+ + LLD+ F+ VD + DI
Sbjct: 117 RANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDI 176
Query: 809 FK--ECVRGALKGKTIILVTHQV-DFLHNVDLILVMREGMIVQSGRYNALLN 857
+ E +R + G +++ H V + L + ++ +G ++ G +L
Sbjct: 177 KRIIEHLRDS--GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 9e-05
Identities = 51/214 (23%), Positives = 98/214 (45%), Gaps = 33/214 (15%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT-------- 710
G+ CL +NL + +TAI G G+GK+SL+ +I G G++ + G
Sbjct: 11 GDLCL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGI 69
Query: 711 ---------AYVAQTSWI-QNGTIEENILFGL-PMNRAKYGEVVRVCCLEKDLEMMEYGD 759
YV Q + + + + N+ +G+ A++ ++V + +E L+
Sbjct: 70 CLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP--- 126
Query: 760 QTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKG 819
+LSGG+KQR+ + RA+ ++ L+D+ +++D ++ R A +
Sbjct: 127 --------GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI 178
Query: 820 KTIIL-VTHQVD-FLHNVDLILVMREGMIVQSGR 851
IL V+H +D L D ++V+ +G + G
Sbjct: 179 NIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 9e-05
Identities = 50/227 (22%), Positives = 99/227 (43%), Gaps = 45/227 (19%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI---DISLLGLHD 1340
+ ++++++ GE G+VG +GSGKS + + + + + R+ D + DI LL L
Sbjct: 22 AVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDN-WRVTADRMRFDDIDLLRLSP 80
Query: 1341 LRSRFGIIPQEPVLFEGTVRSNIDP---IGQYSDEEI--------------WKSLERCQL 1383
R R ++ + +S +DP +G+ + I W+ +L
Sbjct: 81 -RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIEL 139
Query: 1384 ---------KDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATAS 1434
KD++ + P +L + G+ Q + + + RLL DE T S
Sbjct: 140 LHRVGIKDHKDIMRSYPYEL-----------TEGECQKVMIAIALANQPRLLIADEPTNS 188
Query: 1435 VDSQTDAEIQRIIRE--EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
++ T A+I R++ + + TI+ I+H + + D++ V+ G
Sbjct: 189 MEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCG 235
|
Length = 330 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 28/227 (12%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--TTAY-------- 712
L+ ++ I + IVG GSGKS+LL + + + G+++V G AY
Sbjct: 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQ 1385
Query: 713 ---VAQTSWIQNGTIEENILFGLPMNRAKYGEV---VRVCCLEKDLEMMEYGDQTEIGER 766
+ Q + +GT+ +N+ P A EV + + L + + G + + E
Sbjct: 1386 FSMIPQDPVLFDGTVRQNVD---PFLEASSAEVWAALELVGLRERVASESEGIDSRVLEG 1442
Query: 767 GINLSGGQKQRIQLARAVYQ-DCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILV 825
G N S GQ+Q + +ARA+ + L+D+ + +D I + V A T+I +
Sbjct: 1443 GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQI-QATVMSAFSAYTVITI 1501
Query: 826 THQVDFLHNV---DLILVMREGMIVQSGRYNAL-LNSGMDFGALVAA 868
H+ LH V D I+VM G + + G L +N F ++V A
Sbjct: 1502 AHR---LHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEA 1545
|
Length = 1560 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 1e-04
Identities = 72/356 (20%), Positives = 135/356 (37%), Gaps = 83/356 (23%)
Query: 760 QTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKG 819
+T +G LSGGQKQRI +ARA+ ++ I +LD+ S++D S+ + LKG
Sbjct: 570 ETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD--NKSEYLVQKTINNLKG 627
Query: 820 ---KTIILVTHQVDFLHNVDLILVM--RE------------------------------- 843
+ I++ H++ + + I V+ RE
Sbjct: 628 NENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNN 687
Query: 844 --------------GMIVQSGRYNALL--NSGMDFGALVAAHETSMELVEVGKTMPSGNS 887
I++ G ++AL+ +G+ + + +S + S
Sbjct: 688 NNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMK 747
Query: 888 PKTPKSPQITSNLQEANGENKSVEQSNSDKGNSKLIKEEERETGKVGLHVY--------- 938
K + + E NG +K +S S+K + K+ E E G +
Sbjct: 748 SSAYKDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKP 807
Query: 939 ------KIYCTEAYGWWGVVAVLLLSVAWQG------SLMAGDY---WLSYETSEDHSMS 983
+I E + + V ++ LS+ G +L+ Y + E +S
Sbjct: 808 KAPNNLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNK 867
Query: 984 FNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFD 1039
+ SL+I V A+ + ++ Y+ +G K + ++ +IL+ +SFFD
Sbjct: 868 Y--SLYILV---IAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFD 918
|
Length = 1466 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 52/250 (20%), Positives = 100/250 (40%), Gaps = 52/250 (20%)
Query: 1272 DLQVRYRSNTPLV---------------------LKGITLSIHGGEKIGVVGRTGSGKST 1310
+LQ R+ + V ++ I+ S+ GE +G G GSG++
Sbjct: 245 ELQNRFNAMKENVSNLAHETVFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTE 304
Query: 1311 LIQVFFRLVEPSGGRIIIDGIDISLLGLHD-LRSRFGIIPQ---EPVLFEG-TVRSNIDP 1365
L+ F + + +GG I ++G DIS D ++ I + + F ++ N+
Sbjct: 305 LMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNM-- 362
Query: 1366 IGQYSDEEIWKSLERCQLKDVV-----------AAKPDKLDSLVADSGDN----WSVGQR 1410
I +SL+ K + A +L +L S + S G +
Sbjct: 363 -------AISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQ 415
Query: 1411 QLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE-EFAACTIISIAHRIPTVMD- 1468
Q + + + + ++ DE T +D AEI +++R+ I+ ++ +P ++
Sbjct: 416 QKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITV 475
Query: 1469 CDRVIVVDAG 1478
CDR+ V G
Sbjct: 476 CDRIAVFCEG 485
|
Length = 510 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 22/209 (10%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ 720
E +K ++ +++G AI+G GSGKS+L + G + SG++ + + S+ +
Sbjct: 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSY-R 85
Query: 721 NGTIEENILFGLPMN----RAKYGEVVRVCC-LEKDLEMMEYGDQTEIGERGINL----- 770
+ I ++F P R + +++ L DLE + Q R + L
Sbjct: 86 SQRIR--MIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA 143
Query: 771 -------SGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTI 822
+ GQKQR+ LARA+ + + D+ +++D S + + K G +
Sbjct: 144 SYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISY 203
Query: 823 ILVTHQVDFL-HNVDLILVMREGMIVQSG 850
I VT + + H D +LVM +G +V+ G
Sbjct: 204 IYVTQHLGMMKHISDQVLVMHQGEVVERG 232
|
Length = 267 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 49/202 (24%), Positives = 81/202 (40%), Gaps = 52/202 (25%)
Query: 670 IKKGDLTAIVGTVGSGKSSLLASILGEM-----------------------------HKI 700
+ G + I+G G GKS+ L + GE+ K+
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKL 156
Query: 701 -SGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGD 759
G+++ YV + G + E L R K+ EVV LE L+
Sbjct: 157 YEGELRAVHKPQYVDLIPKVVKGKVGE--LLKKVDERGKFDEVVERLGLENVLD------ 208
Query: 760 QTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK- 818
++ E LSGG+ QR+ +A A+ +D D+Y D+ S +D + + +R +
Sbjct: 209 -RDVSE----LSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARV-IRELAED 262
Query: 819 GKTIILVTHQV-------DFLH 833
GK +I+V H + DF+H
Sbjct: 263 GKYVIVVEHDLAVLDYLSDFVH 284
|
Length = 591 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 37/236 (15%)
Query: 1269 DLIDLQVRYRSNTPLV--LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE--PSGG 1324
D+ DL+V + + V + + S+ GE +G+VG +GSGKS Q F L+ + G
Sbjct: 14 DVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKS---QTAFALMGLLAANG 70
Query: 1325 RI----IIDGIDISLL---GLHDLRS-RFGIIPQEPVLFEGTVRSNIDPIGQYSDE--EI 1374
RI +G +I L L+ LR+ + +I Q+P+ ++++P + ++ E+
Sbjct: 71 RIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPM-------TSLNPYMRVGEQLMEV 123
Query: 1375 WKSLERCQLKDVVAAKPDKLDSLVADSG--------DNWSVGQRQLLCLGRVMLKHSRLL 1426
+ + LD++ +S G RQ + + +L +LL
Sbjct: 124 LMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLL 183
Query: 1427 FMDEATASVDSQTDAEIQRIIRE---EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
DE T ++D A+I ++ E EF II I H + V CD+V+V+ AG
Sbjct: 184 IADEPTTALDVTVQAQIMTLLNELKREFNT-AIIMITHDLGVVAGICDKVLVMYAG 238
|
Length = 330 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 44/216 (20%), Positives = 92/216 (42%), Gaps = 35/216 (16%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ 720
E +NI+LE++ G++ + G VG+G++ L ++ G G++ + G I
Sbjct: 277 EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKE--------IN 328
Query: 721 NGTIEENILFG---LPMNRAKYGEVV------RVCCLEKDLE--MMEYGDQTEIGER--- 766
+ + + G LP +R G + VC L + ++ + + ER
Sbjct: 329 ALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRR 388
Query: 767 --GI----------NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR 814
I LSGG +Q++ +A+ + + ++D+ VD +DI++
Sbjct: 389 ALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRS 448
Query: 815 GALKGKTIILVTHQVD-FLHNVDLILVMREGMIVQS 849
A + ++ ++ ++ D +LVM +G I +
Sbjct: 449 IAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGA 484
|
Length = 510 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 52/219 (23%), Positives = 90/219 (41%), Gaps = 47/219 (21%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNG 722
L N++L +K G+ A++G G GKS+L ++G G V G +A+ + Q
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEP--LAKLNRAQRK 85
Query: 723 TIEENI-------------------LFGLPM----NRAKYGEVVRVCCLEKDLEMMEYGD 759
+I + P+ + K + R + L ++ D
Sbjct: 86 AFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEM---LRAVDL-D 141
Query: 760 QTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK- 818
+ + +R LSGGQ QR+ LARA+ + + +LD+ S +D + + + LK
Sbjct: 142 DSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRL-----LKK 196
Query: 819 -----GKTIILVTHQVD----FLHNVDLILVMREGMIVQ 848
G + +TH + F V +VM G IV+
Sbjct: 197 LQQQFGTACLFITHDLRLVERFCQRV---MVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 48/211 (22%), Positives = 97/211 (45%), Gaps = 18/211 (8%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLV---EPSGGRIIIDGIDISLLG---- 1337
L + L+IH GE + ++G +GSGKSTL++ L+ + +G I + G + G
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 1338 -LHDLRSRFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKS----LERCQLKDVVAAKP 1391
+ R+ G I Q+ L +V N+ IG W++ R Q + + A
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENV-LIGALGSTPFWRTCFSWFTREQKQRALQALT 138
Query: 1392 D-KLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE- 1449
+ S GQ+Q + + R +++ ++++ DE AS+D ++ + +R+
Sbjct: 139 RVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDI 198
Query: 1450 -EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
+ T++ H++ + C+R++ + G
Sbjct: 199 NQNDGITVVVTLHQVDYALRYCERIVALRQG 229
|
Length = 262 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 55/221 (24%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--TTAYVAQ 715
+E LK+I+L G ++G G+GKS+LL + G + +G+ + Y+ Q
Sbjct: 16 PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQ 75
Query: 716 TSWI-QNGTIEENILFGLP-----MNR-----AKYGEVVRVCCLEKDLEMMEYGD-QTEI 763
+ T+ EN+ G+ ++R AK+ E D +M Q E+
Sbjct: 76 EPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAE--------PDADMDALLAEQAEL 127
Query: 764 GERGI-----------------------------NLSGGQKQRIQLARAVYQDCDIYLLD 794
E I LSGG+++R+ L R + D+ LLD
Sbjct: 128 QEI-IDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLD 186
Query: 795 DVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNV 835
+ + +DA + + + + G T++ VTH FL NV
Sbjct: 187 EPTNHLDAESVAWLEQHLQE--YPG-TVVAVTHDRYFLDNV 224
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 46/238 (19%)
Query: 655 DDENGEECLK----------NINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
D GE LK +++ ++KG++ + G +G+G++ L+ + G + + SG V
Sbjct: 250 DKAPGEVRLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYV 309
Query: 705 KVCGTTAYVAQTS-WIQNG-----------------TIEENI-LFGLPMNRAKYGEVVRV 745
+ G + NG +++EN+ L L G
Sbjct: 310 TLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGS---- 365
Query: 746 CCLEKDLEMMEYGD-------QTEIGERGI-NLSGGQKQRIQLARAVYQDCDIYLLDDVF 797
L+ E D +T E+ I LSGG +Q++ +AR + + +LD+
Sbjct: 366 --LKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPT 423
Query: 798 SAVDAHTGSDIFKECVRGALKGKTIILVTHQV-DFLHNVDLILVMREGMIVQSGRYNA 854
VD +I++ + +G +IILV+ ++ + L D ILVM EG I SG +
Sbjct: 424 RGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRI--SGEFTR 479
|
Length = 501 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-04
Identities = 44/201 (21%), Positives = 96/201 (47%), Gaps = 15/201 (7%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-----TTAYV 713
G + L N+NL+++ + A++G G+GKS+LL + G K SG + G ++
Sbjct: 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKE 69
Query: 714 AQTSWIQ------NGTIEENILFGLPMNR-AKYGEVVRVCCLEKDLEMM--EYGDQTEIG 764
A + I N ++ +++ + + R G V + +D + + E +
Sbjct: 70 ALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPR 129
Query: 765 ERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIIL 824
+ LS Q Q I++A+A + I ++D+ S++ + +F + +G I+
Sbjct: 130 AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVY 189
Query: 825 VTHQVDFLHNV-DLILVMREG 844
++H+++ + + D I ++R+G
Sbjct: 190 ISHKMEEIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 45/194 (23%), Positives = 97/194 (50%), Gaps = 14/194 (7%)
Query: 1291 SIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISL-LGLHDLRSRFGIIP 1349
SIH ++G G+GKSTL++ F + + G I+ G +I L + ++
Sbjct: 25 SIHA-----LMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79
Query: 1350 QE-PVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLV--ADSGDNWS 1406
QE ++ + +V N+ +G+Y + ++ +++ ++ A D+LD + S
Sbjct: 80 QELNLVLQRSVMDNM-WLGRYPTKGMF--VDQDKMYRDTKAIFDELDIDIDPRAKVATLS 136
Query: 1407 VGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE-EFAACTIISIAHRIPT 1465
V Q Q++ + + +++++ MDE T+S+ + + IIR+ + C I+ I+H++
Sbjct: 137 VSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEE 196
Query: 1466 VMD-CDRVIVVDAG 1478
+ CD + ++ G
Sbjct: 197 IFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 2e-04
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASIL--GEMHKISGKVKVCG 708
LKN+++EI G T + G GSGKS+L+ L K++G KV G
Sbjct: 625 LKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPG 672
|
Length = 943 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 770 LSGGQKQRIQLARAV----YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILV 825
LSGG+K+ LA + + +Y+LD++ +D G + + + +KG +I++
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 826 THQVDFLHNVDLILVMR 842
TH + D ++ ++
Sbjct: 138 THLPELAELADKLIHIK 154
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 59/233 (25%), Positives = 93/233 (39%), Gaps = 66/233 (28%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSL-------------LASI-------LGEMHK--- 699
LKN++++I + L I G GSGKSSL + S+ LG+M K
Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDV 70
Query: 700 --ISGKVKVCGTTAYVAQTSWIQN-----GTIEENILFGLPMNRAKYGEVVRVCCLEKDL 752
I G + Q + +N GT+ E I L + A+ G R L
Sbjct: 71 DSIEG----LSPAIAIDQKTTSRNPRSTVGTVTE-IYDYLRLLFARVGIRER-------L 118
Query: 753 EMMEYGDQTEIG------ERGIN-LSGGQKQRIQLARAVYQDCD--IYLLDDVFSAVDAH 803
+ ++G R LSGG+ QRI+LA + +Y+LD+ ++ H
Sbjct: 119 GFL-----VDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDE--PSIGLH 171
Query: 804 TGSDIFKECVRGALK-----GKTIILVTHQVDFLHNVDLILVMREGMIVQSGR 851
D + + LK G T+++V H D + D ++ + G V G
Sbjct: 172 P-RDNDR--LIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGE 221
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 3e-04
Identities = 30/181 (16%), Positives = 53/181 (29%), Gaps = 58/181 (32%)
Query: 1295 GEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVL 1354
GE I +VG GSGK+TL + R + P GG +I + L + D + ++
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASG 61
Query: 1355 FEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLC 1414
S R L
Sbjct: 62 ---------------------------------------------------SGELRLRLA 70
Query: 1415 LGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR-------EEFAACTIISIAHRIPTVM 1467
L +L +DE T+ +D++ +A + + + T+I + +
Sbjct: 71 LALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLG 130
Query: 1468 D 1468
Sbjct: 131 P 131
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS----GGRII 1327
+L N +LKG+ LSI+ GE ++G GSGKSTL +V P+ G I+
Sbjct: 12 NLHASV--NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVI--AGHPAYKILEGDIL 67
Query: 1328 IDGIDISLLGLHDLRSRFGIIP--QEPVLFEGTVRSNID 1364
G I L + R+ GI Q P+ G SN D
Sbjct: 68 FKGESILDLE-PEERAHLGIFLAFQYPIEIPGV--SNAD 103
|
Length = 252 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-04
Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 17/203 (8%)
Query: 1288 ITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347
I+L + GE +G+ G G+G++ L + + L GGRI+++G +I+ L R G+
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ-RLARGL 340
Query: 1348 I--P---QEPVLF-EGTVRSNIDPIGQYSDEEIW--KSLERCQLKDVVAAKPDKLDSLVA 1399
+ P Q L+ + + N+ + ++ W + E L+ A K +
Sbjct: 341 VYLPEDRQSSGLYLDAPLAWNVCAL-THNRRGFWIKPARENAVLERYRRALNIKF-NHAE 398
Query: 1400 DSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR----EEFAACT 1455
+ S G +Q + + + + +LL +DE T VD +I ++IR + A
Sbjct: 399 QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLF 458
Query: 1456 IISIAHRIPTVMDCDRVIVVDAG 1478
I S I + DRV+V+ G
Sbjct: 459 ISSDLEEIEQM--ADRVLVMHQG 479
|
Length = 510 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 48/224 (21%), Positives = 81/224 (36%), Gaps = 52/224 (23%)
Query: 1271 IDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSG---GRII 1327
I + +LK + + GE + V+GR GSG STL++ E + G I
Sbjct: 9 ISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIH 68
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFEG---------TVRSNIDPIGQYSDEEIWKSL 1378
+GI F +++ TVR +D
Sbjct: 69 YNGIPYK---------EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFAL----------- 108
Query: 1379 ERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQ 1438
RC+ + V G S G+R+ + + ++ + +L D +T +DS
Sbjct: 109 -RCKGNEFV-------------RG--ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSS 152
Query: 1439 TDAEIQRIIRE---EFAACTIISIAHRIPTVMDC-DRVIVVDAG 1478
T EI + IR T +S+ + D D+V+V+ G
Sbjct: 153 TALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEG 196
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 4e-04
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 58/211 (27%)
Query: 669 EIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWI---QNGTIE 725
EI +G++ IVG G GK++ + G + G+V +Y Q +I +GT+E
Sbjct: 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQ--YIKPDYDGTVE 418
Query: 726 ENILFGLPMNRAKYG------EVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQ 779
+ L G E+++ LE+ L+ + + LSGG+ QR+
Sbjct: 419 DL----LRSITDDLGSSYYKSEIIKPLQLERLLDK-------NVKD----LSGGELQRVA 463
Query: 780 LARAVYQDCDIYLLD------DVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQV---D 830
+A + +D D+YLLD DV + + + + T ++V H + D
Sbjct: 464 IAACLSRDADLYLLDEPSAHLDVEQRLAV---AKAIRRIAEE--REATALVVDHDIYMID 518
Query: 831 FLHNVDLILV----------------MREGM 845
++ D ++V MREGM
Sbjct: 519 YI--SDRLMVFEGEPGKHGHASGPMDMREGM 547
|
Length = 590 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 7/169 (4%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNG 722
L +I+L+ +GD+ +VG GSGKS+L I G + GKV G + +A ++ + +G
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGL-SG 98
Query: 723 TIE--ENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQL 780
+ ENI F + K E+ + K +E E G+ I + S G + ++
Sbjct: 99 QLTGIENIEFKMLCMGFKRKEIKAM--TPKIIEFSELGEF--IYQPVKKYSSGMRAKLGF 154
Query: 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQV 829
+ + + DI ++D+ S D + + KTI V+H +
Sbjct: 155 SINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNL 203
|
Length = 264 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 4e-04
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKIS 701
A+EV + +D+ KN+NL ++ G+ AI+G G GK++LL +++GE+ S
Sbjct: 317 RNALEVENLTKGFDNG---PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS 373
Query: 702 GKVK 705
G VK
Sbjct: 374 GTVK 377
|
Length = 530 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 18/172 (10%)
Query: 1288 ITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL-RSRFG 1346
++ + GE + +VG G+GKSTL+ L+ P G I G + +L R R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 1347 IIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVA--AKPDKLDSLVADSGDN 1404
+ Q+ F P+ QY + + A+ LD + S +
Sbjct: 74 LSQQQTPPF-------AMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQ 126
Query: 1405 WSVGQRQLLCLGRVMLK-------HSRLLFMDEATASVDSQTDAEIQRIIRE 1449
S G+ Q + L V+L+ +LL +DE S+D A + R++ E
Sbjct: 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSE 178
|
Length = 248 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 23/189 (12%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW 718
G + L+ + ++ G++ + G G+GKS+LL I G +GK+ G +
Sbjct: 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNRE 73
Query: 719 I-----QNGTIEENILFGLPMNRAKYGEVVRVCCL----EKDLEMMEYGDQTEIG----- 764
+ Q G I ++ L M+R Y V + D+ ++G
Sbjct: 74 VPFLRRQIGMIFQD--HHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKA 131
Query: 765 -ERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDI---FKECVRGALKGK 820
I LSGG++QR+ +ARAV + L D+ +D I F+E R G
Sbjct: 132 KNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR---VGV 188
Query: 821 TIILVTHQV 829
T+++ TH +
Sbjct: 189 TVLMATHDI 197
|
Length = 222 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 5e-04
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASIL 694
LKNI++EI G T + G GSGKS+L+ L
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTLINDTL 648
|
Length = 935 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 54/218 (24%), Positives = 85/218 (38%), Gaps = 45/218 (20%)
Query: 1287 GITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP----SGGRIIIDGIDISLLGLHDLR 1342
+ LS+ GE + +VG +GSGKS L+ P + G I++DG + L +R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLS---IR 60
Query: 1343 SR-FGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKL--DSLVA 1399
R I Q P R+ +P+ + I E + ++ + L ++L A
Sbjct: 61 GRHIATIMQNP-------RTAFNPLFTMGNHAI----ETLRSLGKLSKQARALILEALEA 109
Query: 1400 DSGDNWSVGQRQLL----------CLGRVM-----LKHSRLLFMDEATASVDSQTDAEIQ 1444
+ ++L L RVM L L DE T +D A +
Sbjct: 110 VGLPD----PEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVL 165
Query: 1445 ---RIIREEFAACTIISIAHRIPTVMDC-DRVIVVDAG 1478
R +R+ F I+ I H + V D V V+D G
Sbjct: 166 KLLRELRQLFGT-GILLITHDLGVVARIADEVAVMDDG 202
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 8e-04
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
V+L + + V+ + L+I+ GE + ++G +G GK+T++++ P GRI+
Sbjct: 15 VELRGISKSFDGKE--VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM 72
Query: 1328 IDGIDIS 1334
+DG DI+
Sbjct: 73 LDGQDIT 79
|
Length = 375 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-04
Identities = 57/210 (27%), Positives = 97/210 (46%), Gaps = 36/210 (17%)
Query: 1286 KGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL---- 1341
K I L IH GE + VG +G GKSTL+++ L + + G + I ++D+
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKR-----MNDVPPAE 74
Query: 1342 RSRFGIIPQEPVLFEG-TVRSNID---PIGQYSDEEIWKSLERC----QLKDVVAAKPDK 1393
R G++ Q L+ +V N+ + EEI + + + QL ++ KP
Sbjct: 75 RG-VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKA 133
Query: 1394 LDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS----QTDAEIQRIIRE 1449
L SG GQRQ + +GR ++ + +DE +++D+ Q EI R+ +
Sbjct: 134 L------SG-----GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 182
Query: 1450 EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
T+I + H M D+++V+DAG
Sbjct: 183 --LGRTMIYVTHDQVEAMTLADKIVVLDAG 210
|
Length = 369 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 0.001
Identities = 47/207 (22%), Positives = 91/207 (43%), Gaps = 32/207 (15%)
Query: 665 NINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH-KISGKVKVCGTTAYVAQTSWIQNGT 723
+++ +++G++ + G VG+G++ L+ ++ G K G V + G V + Q
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKP--VDIRNPAQ--A 333
Query: 724 IEENILFGLPMNRAKYGEV--------VRVCCLEKDLEMMEYGDQTEIG--ERGIN---- 769
I I +P +R ++G V + + L+ M E+ I
Sbjct: 334 IRAGIAM-VPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKV 392
Query: 770 -----------LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK 818
LSGG +Q+ LA+ + + + +LD+ VD +I+K + A +
Sbjct: 393 KTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE 452
Query: 819 GKTIILVTHQV-DFLHNVDLILVMREG 844
G II+V+ ++ + L D +LV+ EG
Sbjct: 453 GVAIIVVSSELAEVLGLSDRVLVIGEG 479
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 49/194 (25%)
Query: 1275 VRYRSNTPLV----LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS--GGRIII 1328
+ Y L I+ + G ++G +G+GK+TL+ V G I+I
Sbjct: 9 LNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILI 68
Query: 1329 DGIDISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVV 1387
+G + + + G + Q+ V TVR + ++S L+ +
Sbjct: 69 NGRPLDK----NFQRSTGYVEQQDVHSPNLTVREAL----RFS----------ALLRGL- 109
Query: 1388 AAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII 1447
SV QR+ L +G + +LF+DE T+ +DSQ I R +
Sbjct: 110 ------------------SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFL 151
Query: 1448 REEFAA-----CTI 1456
++ + CTI
Sbjct: 152 KKLADSGQAILCTI 165
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 0.001
Identities = 56/219 (25%), Positives = 107/219 (48%), Gaps = 30/219 (13%)
Query: 657 ENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH--------KISGKVKVCG 708
E+ + L+ + + G LTA++G G+GK++L+ + G +ISG K
Sbjct: 890 EDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE 949
Query: 709 TTA----YVAQTSWIQNG--TIEENILFG----LPMNRAKYGEVVRVCCLEKDLEMMEYG 758
T A Y Q I + T+ E++++ LP +K +++ V ++ +E++E
Sbjct: 950 TFARISGYCEQND-IHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFV---DEVMELVELD 1005
Query: 759 DQTE--IGERGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRG 815
+ + +G G+ LS Q++R+ +A + + I +D+ S +DA + I VR
Sbjct: 1006 NLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA-IVMRTVRN 1064
Query: 816 AL-KGKTIILVTHQ--VDFLHNVDLILVM-REGMIVQSG 850
+ G+T++ HQ +D D +L+M R G ++ SG
Sbjct: 1065 TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103
|
Length = 1470 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASIL 694
LKNI+++I G LT + G GSGKSSL+ L
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTL 42
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 57/253 (22%), Positives = 99/253 (39%), Gaps = 76/253 (30%)
Query: 647 VRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKV 706
VR + G ++++ ++ G++ IVG GSGK++LL ++ + +G+V
Sbjct: 9 VRGLTKLYGPRKG---CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHY 65
Query: 707 ---CGTTAYVAQ-----------TSWIQNGTIEENILFGLPMN---RAKYGEVVRVCCLE 749
G + T W G + ++ GL M GE
Sbjct: 66 RMRDGQLRDLYALSEAERRRLLRTEW---GFVHQHPRDGLRMQVSAGGNIGE-------- 114
Query: 750 KDLEMM-----EYGD----------QTEIGERGIN-----LSGGQKQRIQLARAVYQDCD 789
+M YGD + EI I+ SGG +QR+Q+AR +
Sbjct: 115 ---RLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPR 171
Query: 790 IYLLDDVFSAVDAHTGS---DIFKECVRGALKGKTIILVTHQVDFLHNVDL--------- 837
+ +D+ +D + D+ + VR G +++VTH DL
Sbjct: 172 LVFMDEPTGGLDVSVQARLLDLLRGLVREL--GLAVVIVTH--------DLAVARLLAHR 221
Query: 838 ILVMREGMIVQSG 850
+LVM++G +V+SG
Sbjct: 222 LLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.002
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 20/141 (14%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNG 722
L +I L + G ++G G+GKS+L+ + GE+ +SG++ I+ G
Sbjct: 328 LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI---------GLAKGIKLG 378
Query: 723 TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEY-------GDQ-TEIGERGINLSGGQ 774
++ L L + + + R+ E + ++ +Y GD+ TE R SGG+
Sbjct: 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRR---FSGGE 435
Query: 775 KQRIQLARAVYQDCDIYLLDD 795
K R+ LA V+Q ++ LLD+
Sbjct: 436 KARLVLALIVWQRPNLLLLDE 456
|
Length = 638 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.002
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSL 689
LKNI+LEI + L I G GSGKSSL
Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSL 42
|
Length = 935 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 768 INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKG-KTIILVT 826
I+LSGG+ QR+ +A A+ ++ YL D+ + +D + + R + +G KT ++V
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 827 HQVDFLHNVDLILVMREGMIVQSGRY 852
H + L + + + EG + G Y
Sbjct: 130 HDLAVLDYLSDRIHVFEG---EPGVY 152
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.003
Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 43/181 (23%)
Query: 1287 GITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRF- 1345
G++ +++ GE + + G G+GK++L+++ L P G ++ G I R +
Sbjct: 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPI-----RRQRDEYH 73
Query: 1346 ----------GI----IPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLK---DVVA 1388
GI E + F + G DE +W++L + L DV
Sbjct: 74 QDLLYLGHQPGIKTELTALENLRFYQRLH------GPGDDEALWEALAQVGLAGFEDVPV 127
Query: 1389 AKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR 1448
L S GQ++ + L R+ L + L +DE ++D Q A ++ ++
Sbjct: 128 R------QL--------SAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLA 173
Query: 1449 E 1449
+
Sbjct: 174 Q 174
|
Length = 204 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 26/214 (12%)
Query: 1269 DLIDLQ-VRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+L+D++ V + + I+L++ G+ ++G +G GK+TL+++ + P G I+
Sbjct: 6 NLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEIL 65
Query: 1328 IDGIDISLL---GLHDLRSRFGIIPQEPVLF-EGTVRSNID-PIGQYSD--EEIWKS--- 1377
DG +I + L+ +R R ++ Q LF + V N+ P+ +++ + S
Sbjct: 66 FDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVM 125
Query: 1378 --LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASV 1435
LE L+ P +L S G + L R + L+ DE
Sbjct: 126 MKLEAVGLRGAAKLMPSEL-----------SGGMARRAALARAIALEPDLIMFDEPFVGQ 174
Query: 1436 DSQTDAEIQRIIREEFAA--CTIISIAHRIPTVM 1467
D T + ++I E +A T + ++H +P V+
Sbjct: 175 DPITMGVLVKLISELNSALGVTCVVVSHDVPEVL 208
|
Length = 269 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 43/185 (23%)
Query: 646 EVRDGVFSWDDENGEECLKNIN---LEIKKGDLTAIVGTVGSGKSSLLASILGEMHK-IS 701
V+ G+F E +K ++ +++G A+VG G GKS+L A +L +
Sbjct: 16 PVKRGLFK-----PERLVKALDGVSFTLERGKTLAVVGESGCGKSTL-ARLLTMIETPTG 69
Query: 702 GKVKVCGTTAYVAQTSWI-----------QN-----------GTI-EENILFGLPMNRAK 738
G++ G A QN G I EE +L ++ A+
Sbjct: 70 GELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAE 129
Query: 739 YGEVVRVCCLEKDLEMME-YGDQTEIGERGINL-SGGQKQRIQLARAVYQDCDIYLLDDV 796
R EK L MM G + E +R ++ SGGQ+QRI +ARA+ D D+ + D+
Sbjct: 130 -----RR---EKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEP 181
Query: 797 FSAVD 801
SA+D
Sbjct: 182 VSALD 186
|
Length = 327 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.003
Identities = 53/231 (22%), Positives = 87/231 (37%), Gaps = 55/231 (23%)
Query: 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH--- 698
I + + D + LK ++ IK G+LT ++G GSG S+LL +I
Sbjct: 56 KILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFH 115
Query: 699 -KISGKVKVCGTT------------AYVAQTS-WIQNGTIEENILFGL----PMNRAK-- 738
+ G + G T Y A+T + T+ E + F P NR
Sbjct: 116 IGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGV 175
Query: 739 ----YGEVVRVCCLEKDLEMMEYG----DQTEIGE---RGINLSGGQKQRIQLARAVYQD 787
Y + + D+ M YG T++G RG+ SGG+++R+ +A A
Sbjct: 176 SREEYAKHIA------DVYMATYGLSHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGG 227
Query: 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLI 838
I D+ +D+ T + + ALK + L L+
Sbjct: 228 AKIQCWDNATRGLDSATALEFIR-----ALK--------TSANILDTTPLV 265
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 26/213 (12%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL--- 1341
++ ++ +H GE +G+ G G+ ++ +++ F + E S G I + G I+ ++
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323
Query: 1342 --------RSRFGIIPQEPVLFEGTVRSNID----PIGQYSDEEIWKSLERCQLKDVVAA 1389
R GI + F + SNI +G + + KS + + +
Sbjct: 324 GFALVTEERRSTGIYAYLDIGFNSLI-SNIRNYKNKVGLLDNSRM-KSDTQWVIDSMRVK 381
Query: 1390 KPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 1449
P + + SG G +Q + +GR +L +L +DE T +D EI ++I
Sbjct: 382 TPGHRTQIGSLSG-----GNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLI-A 435
Query: 1450 EFAACT--IISIAHRIPTVMD-CDRVIVVDAGL 1479
E A II I+ +P ++ DR++V+ GL
Sbjct: 436 ELAKKDKGIIIISSEMPELLGITDRILVMSNGL 468
|
Length = 491 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 1276 RYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISL 1335
++++ T L I+L + G+ IG+VG GSGKSTL + + P+ G++ +G ++S+
Sbjct: 31 KHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-EVSV 89
Query: 1336 LGL 1338
+ +
Sbjct: 90 IAI 92
|
Length = 264 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.003
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASIL 694
LKNI + I G T I G GSGKS+L+ L
Sbjct: 624 LKNITVSIPLGLFTCITGVSGSGKSTLINDTL 655
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASI 693
E LK ++L+ GD+ +I+G+ GSGKS+ L I
Sbjct: 20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCI 52
|
Length = 256 |
| >gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 0.004
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSL 689
LKNI+L+I + L G GSGKSSL
Sbjct: 16 LKNIDLDIPRDKLVVFTGLSGSGKSSL 42
|
Length = 943 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 56/235 (23%), Positives = 99/235 (42%), Gaps = 61/235 (25%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH--------KISGKVKVCGTT---- 710
L++++L I+ G +TA++G G+GKS+LL ++ G++ +++G V + G
Sbjct: 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76
Query: 711 ---------AYVAQTSWIQNG---TIEENILFG-LPMNRAKYGEVVRVCCLEKDLEM--- 754
A + Q + Q + E +L G P R G + +D E+
Sbjct: 77 DAPRLARLRAVLPQAA--QPAFAFSAREIVLLGRYPHARRA-GALTH-----RDGEIAWQ 128
Query: 755 -MEYGDQTEIGERGI-NLSGGQKQRIQLARAVYQ---------DCDIYLLDDVFSAVD-A 802
+ T + R + LSGG+ R+Q AR + Q LLD+ +A+D A
Sbjct: 129 ALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLA 188
Query: 803 H------TGSDIFKECVRGALKGKTIILVTHQVDF-LHNVDLILVMREGMIVQSG 850
H T + ++ G L + H + + D I ++ +G IV G
Sbjct: 189 HQHRLLDTVRRLARDWNLGVLA------IVHDPNLAARHADRIAMLADGAIVAHG 237
|
Length = 272 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 46/195 (23%), Positives = 77/195 (39%), Gaps = 46/195 (23%)
Query: 1273 LQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFF----RLVEPSG----G 1324
L V R +L+ ++L I G ++GR G+GKSTL++ P G G
Sbjct: 7 LHVARRHRA--ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTG 64
Query: 1325 RIIIDGIDISLLGLHDLRSRFGIIPQ--EPVLFEGTVRSNIDPIGQY-----------SD 1371
+ ++G ++ + L ++PQ +P F + R I +G+Y D
Sbjct: 65 DVTLNGEPLAAIDAPRLARLRAVLPQAAQPA-FAFSAR-EIVLLGRYPHARRAGALTHRD 122
Query: 1372 EEI-WKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLK--------- 1421
EI W++L +LV S G+ + RV+ +
Sbjct: 123 GEIAWQALALAG-----------ATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQ 171
Query: 1422 HSRLLFMDEATASVD 1436
R L +DE TA++D
Sbjct: 172 PPRYLLLDEPTAALD 186
|
Length = 272 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1479 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-274 Score=2610.67 Aligned_cols=1220 Identities=49% Similarity=0.802 Sum_probs=1142.7
Q ss_pred CCCcccCch--hHHHHHHhHHHHHHccccCCCCCCCCCCCCccchHHHHHHHHHhcCCCCCCC--CCcchHHHHHHHHHH
Q 000463 253 VSGFASASI--LSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFESKWPKPHEK--CKHPVRTTLLRCFWK 328 (1479)
Q Consensus 253 ~~p~~~a~~--~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~--~~~~l~~~l~~~~~~ 328 (1479)
++|.+.++. +|+++|||++|++++|||++|+.+|+|+|+++|+++.+.++|+++|+++.++ ++|+++++++++||+
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~~~psl~~al~~~f~~ 201 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSGKKPSLLRALLRTFGR 201 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHH
Confidence 445555555 9999999999999999999999999999999999999999999999988543 478999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 329 EVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSL 408 (1479)
Q Consensus 329 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~riR~~L~~~I 408 (1479)
++++.++++++.+.+.|++|.+|+.+|+|+++++.+.+.||+|++++|++.++++++.|||+|.++++|+|+|++|+++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~I 281 (1381)
T KOG0054|consen 202 TFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAI 281 (1381)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999877788999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 409 YRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGIIGVMIFVVMG 488 (1479)
Q Consensus 409 y~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~~~~~~w~~plqi~lal~lL~~~lG~s~l~gl~~~il~~~~~~~~ 488 (1479)
|||+|++++.++++++.|+|+|+|++|++|+++++.++|.+|++|+|+++++++||+++|+++++|++++++++|+|.++
T Consensus 282 Y~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~ 361 (1381)
T KOG0054|consen 282 YRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFL 361 (1381)
T ss_pred HHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 489 TKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMWSTPVLISTL 568 (1479)
Q Consensus 489 ~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~~~~p~~v~~~ 568 (1479)
+++++++|++.|+.+|+|++.|||+|+|||+|||||||++|.++|+++|++|++++||..|+.+++.++++++|++++++
T Consensus 362 a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~ 441 (1381)
T KOG0054|consen 362 AKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVV 441 (1381)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccccccCCCCCccEEE
Q 000463 569 TFATAL-LFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEV 647 (1479)
Q Consensus 569 tF~~~~-l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i~~ 647 (1479)
||++|+ +.|+.++++++|+++++||+|+.|+.++|+.++.++|++||++|+++||..+|.+++..++.+.++.+.+|++
T Consensus 442 tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i 521 (1381)
T KOG0054|consen 442 TFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEI 521 (1381)
T ss_pred HHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEE
Confidence 999999 6788999999999999999999999999999999999999999999999999998877664445556678999
Q ss_pred EeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCeEEEEeccCcCCCCcHHHH
Q 000463 648 RDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEEN 727 (1479)
Q Consensus 648 ~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~iayv~Q~~~i~~~Tv~en 727 (1479)
+|++|+|+++++.++|+||||+|++|+++||||++||||||||++|+||+++.+|+|.++|.+|||||+|||+|+|||||
T Consensus 522 ~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreN 601 (1381)
T KOG0054|consen 522 KNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVREN 601 (1381)
T ss_pred eeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHh
Confidence 99999999765667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHH
Q 000463 728 ILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSD 807 (1479)
Q Consensus 728 I~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~ 807 (1479)
|+||.|+|+++|++|+++|+|++|++.+|.||+|+|||||.||||||||||+||||+|+|+||||||||+||||+|+++|
T Consensus 602 ILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~ 681 (1381)
T KOG0054|consen 602 ILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKH 681 (1381)
T ss_pred hhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcCcchHHHHHHhhhhhhhhhccccCCCCCC
Q 000463 808 IFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNS 887 (1479)
Q Consensus 808 i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~ 887 (1479)
||++|+++.+++||+|+|||+++++++||+|++|+||+|.++|+|+|+++.+.+|.++..+.+ .+..+. ...+. .
T Consensus 682 if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~--~~~~~~-~~~~~--~ 756 (1381)
T KOG0054|consen 682 IFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEE--SEQEEE-ASEKD--L 756 (1381)
T ss_pred HHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccc--hhhccc-ccccc--c
Confidence 999999999999999999999999999999999999999999999999999999998833222 111110 00000 0
Q ss_pred CCCCCCCccc-cccccccCCCcccccccccCCCchhhhHHHHhcCcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 000463 888 PKTPKSPQIT-SNLQEANGENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLM 966 (1479)
Q Consensus 888 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~ 966 (1479)
+......... ...+...... ......+....++.++|+++.|.+++++|+.|+++.+|++.+++++++.++.+++.+
T Consensus 757 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~ 834 (1381)
T KOG0054|consen 757 ESGESSRESESRSLESLSSEE--EKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQI 834 (1381)
T ss_pred cccccccchhhhhhhhhcccc--cccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 0000000000 001112223567888899999999999999999998888888888899999999999
Q ss_pred hhhhhcccccccCCCCC---CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecccCc
Q 000463 967 AGDYWLSYETSEDHSMS---FNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPS 1043 (1479)
Q Consensus 967 ~~~~wl~~~~~~~~~~~---~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~ 1043 (1479)
+++||+++|++...... .+...|+++|+++++++.++.++|++.+..++.++|+.+|++|+++++|+||+|||+||+
T Consensus 835 ~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~ 914 (1381)
T KOG0054|consen 835 ASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPT 914 (1381)
T ss_pred HHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCc
Confidence 99999999997643222 467889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000463 1044 GRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKA 1123 (1479)
Q Consensus 1044 G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~s 1123 (1479)
|||+||||+|++.+|..+|..+..++..+++++++++++++.+|+++++++|+.++++++++||++++||++|+++++||
T Consensus 915 GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRS 994 (1381)
T KOG0054|consen 915 GRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRS 994 (1381)
T ss_pred cchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhccCCcChh
Q 000463 1124 PVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPE 1203 (1479)
Q Consensus 1124 p~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~g 1203 (1479)
|+++||+||++|+.|||||+++++|.+++..++|.+++++|...+++||+++|+|+++++++++++++++..+.+..+||
T Consensus 995 Pi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g 1074 (1381)
T KOG0054|consen 995 PIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPG 1074 (1381)
T ss_pred hHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888776658899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCccEEEEeeeeeecCCCCc
Q 000463 1204 NVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPL 1283 (1479)
Q Consensus 1204 ~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~ 1283 (1479)
.+|++++|++++++.++|++++.+++|++|+||||+.||.++|+|+|+..+..+||++||++|+|+|+|+++||+|+.|+
T Consensus 1075 ~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~ 1154 (1381)
T KOG0054|consen 1075 LVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPL 1154 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcc
Confidence 99999999999999999999999999999999999999999999988777777799999999999999999999999999
Q ss_pred ceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCccccccccHhhhc
Q 000463 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNI 1363 (1479)
Q Consensus 1284 vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NL 1363 (1479)
|||||||+|+||||||||||||||||||+++|||+.||.+|+|.|||+||+++++|+||++++||||||+||+||+|+||
T Consensus 1155 VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NL 1234 (1381)
T KOG0054|consen 1155 VLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNL 1234 (1381)
T ss_pred hhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHH
Q 000463 1364 DPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI 1443 (1479)
Q Consensus 1364 dp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~I 1443 (1479)
||+++|+|+|||+|||+|+|+++|+++|+|||++|.|+|+|||.||||++||||||||++||||||||||++|++||..|
T Consensus 1235 DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lI 1314 (1381)
T KOG0054|consen 1235 DPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 1314 (1381)
T ss_pred CcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1444 QRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1444 q~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|++||++|+|||||+||||++||+|||||+|||+|+
T Consensus 1315 Q~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~ 1350 (1381)
T KOG0054|consen 1315 QKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGR 1350 (1381)
T ss_pred HHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCe
Confidence 999999999999999999999999999999999996
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-213 Score=2164.94 Aligned_cols=1410 Identities=33% Similarity=0.553 Sum_probs=1182.6
Q ss_pred hccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCccccccccccccchhHHHHHHHHHHHHHHHHHH
Q 000463 35 FIFLSPCPQRALLSFVDLLFLLALIVFAVQKLYSKFTASGLSSSDISKPLIRNNRASVRTTLWFKLSLIVTALLALCFTV 114 (1479)
Q Consensus 35 ~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (1479)
+..++||++++++.|+|++|+++++++.++... +... .. ++.. ...+......+.+++|....++...
T Consensus 26 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (1622)
T PLN03130 26 FGAYTPCATDSLVINISHLVLLGLCLYRIWLIK-KDHK-VQ------RFCL----RSKWYNYFLALLAAYCTAEPLFRLV 93 (1622)
T ss_pred cCCCCccHHhhHHHHHHHHHHHHHHHHHHHHhc-cccc-cC------Cccc----cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334999999999999999999999988887652 2100 10 1110 0011112333344444444444433
Q ss_pred HHHHHhccCCCCc--cchHH-HHHHHHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHH---HHHHHHHhhHHHHHHh
Q 000463 115 ICILTFSGSTQWP--WKLVD-ALFWLVHAITHAVIAILIVHEKKFEAVTHPLSLRIYWVAN---FIIVSLFTTSGIIRLV 188 (1479)
Q Consensus 115 ~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~---~~~~~~~~~~~~~~~~ 188 (1479)
.++..+..+.... ...+. ++.+++..++++++.++...++. ++.++++.+++||++. ++|.++.. .....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 169 (1622)
T PLN03130 94 MGISVLNLDGQTSLPPFEIVSLIVEALTWCSMLVMIGVETKIYI-REFRWYVRFAVIYVLVGDAVMLNLVLS---VKEYY 169 (1622)
T ss_pred HHhhhhccccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHH-hcCCCcceeehhHHHhhHHHHHHHHHH---HHHHH
Confidence 3333322222112 22333 55566677777766665444544 5678999999999998 66655511 11111
Q ss_pred hhhhhhccccccccchhhHHHHHHHHHHHHH-HHcccccccC-CCCCCCCcccccccc-cccCCCCCCCCcccCchhHHH
Q 000463 189 SFETAQFCSLKLDDIVSIVSFPLLTVLLFIA-IRGSTGIAVN-SDSEPGMDEKTKLYE-PLLSKSDVVSGFASASILSKA 265 (1479)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~a~~~s~~ 265 (1479)
.+. .. ...+..+.+.+.+.++. +... +.... ...... .+.+...+ ++...+.+++||++||++||+
T Consensus 170 ~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~ 238 (1622)
T PLN03130 170 SSF-----VL----YLYISEVAAQVLFGILLLVYFP-NLDPYPGYTPIG-SESVDDYEYEELPGGEQICPERHANIFSRI 238 (1622)
T ss_pred hcc-----cc----ceehhHHHHHHHHHHHHHHHHh-cCCCCccccccc-ccccccccccCCcccCCCCcccccCHHHHH
Confidence 110 00 11333333333322222 1111 11110 000000 00000000 112234678999999999999
Q ss_pred HHHhHHHHHHccccCCCCCCCCCCCCccchHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 266 FWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFESKWPKPHEKCKHPVRTTLLRCFWKEVAFTAFLAIVRLCVMY 345 (1479)
Q Consensus 266 ~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~ 345 (1479)
+|+|++|++++|||++|+.+|||+|+++|+++.++++|++.|+++.++++|+++++++++||+.++.+++++++.+++.+
T Consensus 239 ~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~ 318 (1622)
T PLN03130 239 FFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELKKPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQF 318 (1622)
T ss_pred HHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998766677999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCCH
Q 000463 346 VGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGV 425 (1479)
Q Consensus 346 ~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~riR~~L~~~Iy~K~L~ls~~~~~~~~~ 425 (1479)
++|++++.+++++.+++ ..+.||.++++++++.++.+++.++|++...++++++|+.+...+|+|.++++...+++.++
T Consensus 319 ~~P~ll~~li~~v~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~ 397 (1622)
T PLN03130 319 VGPLLLNLLLESMQNGE-PAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTS 397 (1622)
T ss_pred HHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCH
Confidence 99999999999997654 34678888888888888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 426 GQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDS 505 (1479)
Q Consensus 426 G~ivnlms~D~~ri~~~~~~~~~~w~~plqi~lal~lL~~~lG~s~l~gl~~~il~~~~~~~~~~~~~~~q~~~m~~~D~ 505 (1479)
|+++|+|++|++++.+++.++|.+|..|+++++++++||..+|+++++|++++++++|++.++++++++.++++|+.+|+
T Consensus 398 G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~ 477 (1622)
T PLN03130 398 GKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDK 477 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHHHH
Q 000463 506 RMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSV 585 (1479)
Q Consensus 506 R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~~~~p~~v~~~tF~~~~l~~~~Lt~~~v 585 (1479)
|++.++|+|+|||+||+|+||+.|.+++++.|++|++..++..+..++..+++...|.++++++|++|.+.++++|++.+
T Consensus 478 r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~v 557 (1622)
T PLN03130 478 RIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARA 557 (1622)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999988888888888988899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccccccCCCCCccEEEEeeEEEecCCCCccccee
Q 000463 586 FTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKN 665 (1479)
Q Consensus 586 Ft~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~ 665 (1479)
|+++++|++++.|+..+|..+..+.++++|++||++||+.+|....... +.......|+++|++|+|++.+++++|+|
T Consensus 558 f~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~--~~~~~~~~I~~~nvsf~y~~~~~~~vL~~ 635 (1622)
T PLN03130 558 FTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNP--PLEPGLPAISIKNGYFSWDSKAERPTLSN 635 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCC--cccCCCCceEEEeeEEEccCCCCCceeec
Confidence 9999999999999999999999999999999999999987765322111 11112346999999999975445689999
Q ss_pred eeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCC-cEEEECCeEEEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHH
Q 000463 666 INLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKIS-GKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVR 744 (1479)
Q Consensus 666 i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~-G~i~~~g~iayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~ 744 (1479)
+||++++||+++|+||+|||||||+++|+|+++|++ |+|.++|++|||+|+||++++||||||+||.++++++|+++++
T Consensus 636 inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~ 715 (1622)
T PLN03130 636 INLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAID 715 (1622)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEE
Q 000463 745 VCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIIL 824 (1479)
Q Consensus 745 ~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvil 824 (1479)
+|+|.+|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||+|++++++++++++.++|||+|+
T Consensus 716 a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIl 795 (1622)
T PLN03130 716 VTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVL 795 (1622)
T ss_pred HhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred EccCCcccccCCEEEEEeCCEEEEecChHHHHhcCcchHHHHHHhhhhhhhhhccccCCCCCCCCCCCCCcccccccccc
Q 000463 825 VTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEAN 904 (1479)
Q Consensus 825 vTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 904 (1479)
|||+++.++.||+|++|++|+|+++|+++|+++.++.|.++...+....+..+...+.. ..+...............
T Consensus 796 VTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 872 (1622)
T PLN03130 796 VTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEEE---DDQTSSKPVANGNANNLK 872 (1622)
T ss_pred EECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhccccccccccccccc---cccccccccccccccccc
Confidence 99999999999999999999999999999999888888887765321111000000000 000000000000000000
Q ss_pred CCCcccccccccCCCchhhhHHHHhcCcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCC
Q 000463 905 GENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSF 984 (1479)
Q Consensus 905 ~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~ 984 (1479)
+ +..+....+.....+.++|+++.|.+++++|+.|+++.++++.+.+++++.++.+++.+++++|+++|++.......
T Consensus 873 -~-~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~ 950 (1622)
T PLN03130 873 -K-DSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTH 950 (1622)
T ss_pred -c-cccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 0 00000011112234567788899999999999999987776666666677778888899999999999864222223
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHH
Q 000463 985 NPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFF 1064 (1479)
Q Consensus 985 ~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~ 1064 (1479)
....|+++|++++++..++.+++.++....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..
T Consensus 951 ~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~ 1030 (1622)
T PLN03130 951 GPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVF 1030 (1622)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 34668889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCc
Q 000463 1065 VGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGK 1144 (1479)
Q Consensus 1065 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~ 1144 (1479)
+..++..++.+++.++++++.+|..+++++|+.++++.++++|.+++|+++|++..+++|+++|+.|+++|+.|||+|++
T Consensus 1031 ~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~ 1110 (1622)
T PLN03130 1031 VNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKA 1110 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcH
Confidence 99999999999999999888888777788888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhccC----CcChhHHHHHHHHHHHHHHHHH
Q 000463 1145 QTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSS----IIKPENVGLSLSYGLSLNGVLF 1220 (1479)
Q Consensus 1145 ~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~----~~~~g~vgl~l~y~~~l~~~l~ 1220 (1479)
+++|.+.+.+..|.+.+..+.....++|+++++++++.+++.+...+.+..... ...++.+|++++|++.+...+.
T Consensus 1111 ~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~ 1190 (1622)
T PLN03130 1111 YDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLT 1190 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887666555444432211 1126789999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEE
Q 000463 1221 WAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGV 1300 (1479)
Q Consensus 1221 ~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgI 1300 (1479)
++++.+..+|+.++|+||+.+|.+.|+|++...++..+++.||.+|.|+|+||+|+|+++.++||+|+||+|+|||||||
T Consensus 1191 ~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaI 1270 (1622)
T PLN03130 1191 AVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGI 1270 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEE
Confidence 99999999999999999999999999887654344456678999999999999999998877899999999999999999
Q ss_pred ECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCccccccccHhhhcCCCCCCCHHHHHHHHHH
Q 000463 1301 VGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLER 1380 (1479)
Q Consensus 1301 VGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~ 1380 (1479)
|||||||||||+++|+|+|+|++|+|+|||+||++++++++|++|++|||||+||+||||+||||+++++|+|||+||++
T Consensus 1271 VGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~ 1350 (1622)
T PLN03130 1271 VGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLER 1350 (1622)
T ss_pred ECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEc
Q 000463 1381 CQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIA 1460 (1479)
Q Consensus 1381 ~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IA 1460 (1479)
++++++|.++|+||||+|+|+|.||||||||||||||||||+|+|||||||||+||.+||+.||++|++.+++||+|+||
T Consensus 1351 a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IA 1430 (1622)
T PLN03130 1351 AHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 1430 (1622)
T ss_pred cCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhcCEEEEEeCCC
Q 000463 1461 HRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1461 HRl~ti~~~DrIlVL~~G~ 1479 (1479)
||++|+++||||+|||+|+
T Consensus 1431 HRL~tI~~~DrIlVLd~G~ 1449 (1622)
T PLN03130 1431 HRLNTIIDCDRILVLDAGR 1449 (1622)
T ss_pred CChHHHHhCCEEEEEECCE
Confidence 9999999999999999996
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-209 Score=2121.44 Aligned_cols=1403 Identities=31% Similarity=0.527 Sum_probs=1173.4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHhh-hccccCCCCCCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 000463 37 FLSPCPQRALLSFVDLLFLLALIVFAVQKLY-SKFTASGLSSSDISKPLIRNNRASVRTTLWFKLSLIVTALLALCFTVI 115 (1479)
Q Consensus 37 ~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (1479)
.++|||+++++.|+|++|+++++++.++... +++ . . .+.. ...+......+.++++....++....
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (1495)
T PLN03232 28 AYTPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAK---A-Q-----IYVL----RKKYYNCVLGILACYCVVEPVLRLVM 94 (1495)
T ss_pred CCCccHHhhHHHHHHHHHHHHHHHHHHHHHhhccc---c-C-----Cccc----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3999999999999999999999988777552 122 1 0 1110 00011112223333333333333222
Q ss_pred HHHHhccCC--CCccchHH-HHHHHHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHH---HHHHHHHhhHHHHHHhh
Q 000463 116 CILTFSGST--QWPWKLVD-ALFWLVHAITHAVIAILIVHEKKFEAVTHPLSLRIYWVAN---FIIVSLFTTSGIIRLVS 189 (1479)
Q Consensus 116 ~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~---~~~~~~~~~~~~~~~~~ 189 (1479)
++..+..+. +....++. ++.+++..++++++..+...++. ++.++++++++||++. ++|.++.. ......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 170 (1495)
T PLN03232 95 GISLFDMDEETDLPPFEVASLMVEAFAWFSMLVLIGLETKQYV-KEFRWYVRFGVVYVLVADAVLLDLVLP---LKNSIN 170 (1495)
T ss_pred HhhhhccccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHH-hcCCCCceeeehhHhhhhHHHHHHHHH---HHHHHh
Confidence 222221111 11123333 55677777777777775555544 5688999999999998 66665511 111111
Q ss_pred hhhhhccccccccchhhHHHHHHHHHHHHH-HHcccccccCCCCCCCCcccccc-cc-cccCCCCCCCCcccCchhHHHH
Q 000463 190 FETAQFCSLKLDDIVSIVSFPLLTVLLFIA-IRGSTGIAVNSDSEPGMDEKTKL-YE-PLLSKSDVVSGFASASILSKAF 266 (1479)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~p~~~a~~~s~~~ 266 (1479)
+. . ....+..+.+.+.+.+.. +... +....+.-+....+ ... .. +..+.+.+.+||++||+|||++
T Consensus 171 ~~-----~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~pe~~a~~~s~~~ 239 (1495)
T PLN03232 171 RT-----A----LYLCISSRCCQALFGILLLVYIP-ELDPYPGYHILNNE-SLDNVEYDALRGGENICPERYASIFSRIY 239 (1495)
T ss_pred cc-----c----cceehhHHHHHHHHHHHHHHhcc-cCCCCCcccccccc-cccccccccccccCCCCccccCCHHHHHH
Confidence 10 0 011333333333322222 1111 11110000000000 000 00 1112246789999999999999
Q ss_pred HHhHHHHHHccccCCCCCCCCCCCCccchHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 267 WIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFESKWPKPHEKCKHPVRTTLLRCFWKEVAFTAFLAIVRLCVMYV 346 (1479)
Q Consensus 267 f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 346 (1479)
|+|++|++++|||++|+.+|||+|+++|+++.++++|++.|+++.++++++++++++++||+.++.+++++++.+++.++
T Consensus 240 f~w~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~ 319 (1495)
T PLN03232 240 FSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFV 319 (1495)
T ss_pred HHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987666678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCCHH
Q 000463 347 GPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVG 426 (1479)
Q Consensus 347 ~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~riR~~L~~~Iy~K~L~ls~~~~~~~~~G 426 (1479)
+|++++.+++++++++ ..+.||.++++++++.++.+++.++|++...++++++|+.+...+|+|.++++....++.++|
T Consensus 320 ~P~ll~~li~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G 398 (1495)
T PLN03232 320 GPVILSHLLQSMQEGD-PAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASG 398 (1495)
T ss_pred HHHHHHHHHHHHhcCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHH
Confidence 9999999999997654 346789999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 427 QIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSR 506 (1479)
Q Consensus 427 ~ivnlms~D~~ri~~~~~~~~~~w~~plqi~lal~lL~~~lG~s~l~gl~~~il~~~~~~~~~~~~~~~q~~~m~~~D~R 506 (1479)
+++|+|++|++++.++..++|.+|..|++++++++++|..+|+++++|++++++++|++.++++++++.++++|+.+|+|
T Consensus 399 ~i~n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r 478 (1495)
T PLN03232 399 KVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKR 478 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHH
Q 000463 507 MKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVF 586 (1479)
Q Consensus 507 ~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~~~~p~~v~~~tF~~~~l~~~~Lt~~~vF 586 (1479)
.+.++|+++|||+||+|+||+.|.+++++.|++|++..++..+..+...+++...|.++++++|++|.+.++++|++.+|
T Consensus 479 ~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf 558 (1495)
T PLN03232 479 VGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAF 558 (1495)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999988888777777788888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccccccCCCCCccEEEEeeEEEecCCCCcccceee
Q 000463 587 TTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNI 666 (1479)
Q Consensus 587 t~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i 666 (1479)
+++++++.+..|+..+|..+..+.++++|++||++||+.+|...+... +.......|+++|++|+|++..++++|+|+
T Consensus 559 ~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~--~~~~~~~~I~~~~vsF~y~~~~~~~vL~~i 636 (1495)
T PLN03232 559 TSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNP--PLQPGAPAISIKNGYFSWDSKTSKPTLSDI 636 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccC--CcCCCCCcEEEEeeEEEcCCCCCCceeeee
Confidence 999999999999999999999999999999999999987653221110 111123479999999999754456899999
Q ss_pred eEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCc-EEEECCeEEEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHH
Q 000463 667 NLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISG-KVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRV 745 (1479)
Q Consensus 667 ~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G-~i~~~g~iayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~ 745 (1479)
||++++||+++|+||+|||||||+++|+|+++|++| .+.+++++|||+|+||++++||||||+||.++++++|++++++
T Consensus 637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~ 716 (1495)
T PLN03232 637 NLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDV 716 (1495)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHH
Confidence 999999999999999999999999999999999997 4577899999999999999999999999999999999999999
Q ss_pred hchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEE
Q 000463 746 CCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILV 825 (1479)
Q Consensus 746 ~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilv 825 (1479)
|++.+|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||++++++++++++.+.+++||+|+|
T Consensus 717 ~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~Ilv 796 (1495)
T PLN03232 717 TALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLV 796 (1495)
T ss_pred hCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887889999999
Q ss_pred ccCCcccccCCEEEEEeCCEEEEecChHHHHhcCcchHHHHHHhhhhhhhhhccccCCCCCCCCCCCCCccccccccccC
Q 000463 826 THQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANG 905 (1479)
Q Consensus 826 TH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 905 (1479)
||+++.++.||+|++|++|+|+++|+++|+++.++.|.++...+....+..+. .+ + ........... ..+. .
T Consensus 797 TH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~-~~-~---~~~~~~~~~~~--~~~~-~ 868 (1495)
T PLN03232 797 TNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEV-NT-N---DENILKLGPTV--TIDV-S 868 (1495)
T ss_pred ECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhcccccccccc-cc-c---ccccccccccc--cccc-c
Confidence 99999999999999999999999999999998888888877554321110000 00 0 00000000000 0000 0
Q ss_pred CCcccccccccCCCchhhhHHHHhcCcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCC
Q 000463 906 ENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFN 985 (1479)
Q Consensus 906 ~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~ 985 (1479)
+.+.....+.+.....+.++|+++.|.+++++|+.|+++.++++.+.+++++.++.+++.+++++|+++|++........
T Consensus 869 ~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~ 948 (1495)
T PLN03232 869 ERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYS 948 (1495)
T ss_pred ccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 00000000011112245678889999999999999999877766666666777778888899999999998642211233
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHH
Q 000463 986 PSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFV 1065 (1479)
Q Consensus 986 ~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~ 1065 (1479)
...|+++|++++++..++.+++.+++...+.++++++|++++++++++|++|||++|+|+++||+++|++.+|..++..+
T Consensus 949 ~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~ 1028 (1495)
T PLN03232 949 PGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLM 1028 (1495)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcH
Q 000463 1066 GITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQ 1145 (1479)
Q Consensus 1066 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~ 1145 (1479)
..++..++.+++.+++++..++...++++|+.++++.++.+|.+++|+++|.+..+++|+++|+.|+++|+.|||+|+++
T Consensus 1029 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~ 1108 (1495)
T PLN03232 1029 NMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAY 1108 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcH
Confidence 99999888888888888887777777778888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-----ChhHHHHHHHHHHHHHHHHH
Q 000463 1146 TTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSII-----KPENVGLSLSYGLSLNGVLF 1220 (1479)
Q Consensus 1146 ~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~-----~~g~vgl~l~y~~~l~~~l~ 1220 (1479)
++|.+++.+..|.+.+..+.....++|+.+++++++.+++.+...+.+.. .+.+ .++.+|++++|+..+...+.
T Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~l~ 1187 (1495)
T PLN03232 1109 DRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLR-NGNAENQAGFASTMGLLLSYTLNITTLLS 1187 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccccccccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888999999999988766555444443322 2221 25678889999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEE
Q 000463 1221 WAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGV 1300 (1479)
Q Consensus 1221 ~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgI 1300 (1479)
++++.+.++|+.++|+||+.+|.+.|+|++...+...+++.||.+|.|+|+||+|+|+++.++||+|+||+|+|||||||
T Consensus 1188 ~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaI 1267 (1495)
T PLN03232 1188 GVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGV 1267 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEE
Confidence 99999999999999999999999998886543233345668999999999999999988777899999999999999999
Q ss_pred ECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCccccccccHhhhcCCCCCCCHHHHHHHHHH
Q 000463 1301 VGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLER 1380 (1479)
Q Consensus 1301 VGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~ 1380 (1479)
|||||||||||+++|+|+++|++|+|.|||+||++++++++|++|++|||||+||+||||+||||+++++|+|||+||++
T Consensus 1268 VG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~ 1347 (1495)
T PLN03232 1268 VGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALER 1347 (1495)
T ss_pred ECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEc
Q 000463 1381 CQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIA 1460 (1479)
Q Consensus 1381 ~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IA 1460 (1479)
++++++|+++|+||||+|+|+|.||||||||||||||||+|+|+|||||||||+||.+||+.||++|++.+++||+|+||
T Consensus 1348 a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IA 1427 (1495)
T PLN03232 1348 AHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIA 1427 (1495)
T ss_pred cCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhcCEEEEEeCCC
Q 000463 1461 HRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1461 HRl~ti~~~DrIlVL~~G~ 1479 (1479)
||++|+++||||+|||+|+
T Consensus 1428 HRl~ti~~~DrIlVL~~G~ 1446 (1495)
T PLN03232 1428 HRLNTIIDCDKILVLSSGQ 1446 (1495)
T ss_pred CCHHHHHhCCEEEEEECCE
Confidence 9999999999999999996
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-207 Score=2110.17 Aligned_cols=1403 Identities=33% Similarity=0.558 Sum_probs=1174.9
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 000463 36 IFLSPCPQRALLSFVDLLFLLALIVFAVQKLYSKFTASGLSSSDISKPLIRNNRASVRTTLWFKLSLIVTALLALCFTVI 115 (1479)
Q Consensus 36 ~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (1479)
.+++|||++++++++|..+++++.+..++... +. .+ . ..+.++++..+..++..+.++.+..
T Consensus 21 ~d~t~~f~~~~~~~~p~~~~~~~~~~~~~~l~-~~--~~-------~--------~~~~~~~~~~k~~~~~~~~~~~~~~ 82 (1522)
T TIGR00957 21 PDFTKCFQNTVLAWVPCFYLWVCFPCYFLYLS-RH--DR-------G--------YIQMTHLNKTKTALGFLLWIVCWAD 82 (1522)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHhh-cc--CC-------C--------cCCcchHHHHHHHHHHHHHHHHHHH
Confidence 55899999999999999999999976666543 11 00 0 1122333334433333333322211
Q ss_pred HHHHhccCCCCc-cchHHHHHHHHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhh
Q 000463 116 CILTFSGSTQWP-WKLVDALFWLVHAITHAVIAILIVHEKKFEAVTHPLSLRIYWVANFIIVSLFTTSGIIRLVSFETAQ 194 (1479)
Q Consensus 116 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1479)
....++...... ..+..+..+++..++|++++++...+++ ++.+.|..+.+||+++++|.++.+++........
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~-~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~---- 157 (1522)
T TIGR00957 83 LFYSFWERSHGRAPAPVFLVSPTLLGITMLLATFLIQLERR-KGVQSSGIMLTFWLVALVCALAILRSKILLALKE---- 157 (1522)
T ss_pred HHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHh-cccCCCcchhHHHHHHHHHHHHHHHHHHHHhhcc----
Confidence 122222221111 1134455667788888777766656554 3467789999999999999888777543221100
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHcccccccCCCCCCCCcccccccccccCCCCCCCCcccCchhHHHHHHhHHHHH
Q 000463 195 FCSLKLDDIVSIVSFPLLTVLLFIAIRGSTGIAVNSDSEPGMDEKTKLYEPLLSKSDVVSGFASASILSKAFWIWMNPLL 274 (1479)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~ 274 (1479)
.... .......+...+.+....+...... . +. |.+.++ ....+.+||++||++||++|||++|++
T Consensus 158 --~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~-~~~~~~--~~~~~~~~e~~a~~~s~~~f~W~~pl~ 222 (1522)
T TIGR00957 158 --DAIV-DPFRDTTFYIYFALVLSQLVLSCFS-----D----KS-PLFSET--NHDPNPCPESSASFLSRITFWWITGMA 222 (1522)
T ss_pred --cccc-cceehhhHHHHHHHHHHHHHHHhhc-----C----CC-Cccccc--cccCCCCCcccCCHHHHHHHHHhHHHH
Confidence 0000 0000111111111111111111100 0 11 332210 112346899999999999999999999
Q ss_pred HccccCCCCCCCCCCCCccchHHHHHHHHHhcCCCCC-----------------------------------------CC
Q 000463 275 SKGYKSPLKIDEIPSLSPQHRAERMSELFESKWPKPH-----------------------------------------EK 313 (1479)
Q Consensus 275 ~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~-----------------------------------------~~ 313 (1479)
++|||++|+.+|||+++++++++.++++|++.|+++. +.
T Consensus 223 ~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1522)
T TIGR00957 223 VYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKP 302 (1522)
T ss_pred HHHhcCCCChhhccCCCHhHhHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999997531 11
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 314 CKHPVRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNS 393 (1479)
Q Consensus 314 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~ 393 (1479)
++++|+++++++||+.++..++++++.+++.+++|++++.+|+|+++++.+.+.||+++++++++.++.+++.++|+|..
T Consensus 303 ~~~sl~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1522)
T TIGR00957 303 RKPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHIC 382 (1522)
T ss_pred CCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999977655566799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 394 QKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVIT 473 (1479)
Q Consensus 394 ~~~g~riR~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~~~~~~w~~plqi~lal~lL~~~lG~s~l~ 473 (1479)
.++|+++|++|++.||+|+|+++..+++++++|+++|+|++|++|+.++..++|.+|..|+++++++++||..+|+++++
T Consensus 383 ~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~ 462 (1522)
T TIGR00957 383 FVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLA 462 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 474 TVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISG 553 (1479)
Q Consensus 474 gl~~~il~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~ 553 (1479)
|++++++++|++.+++++++++++++|+.+|+|++.++|+++|||+||+|+||+.|.+++++.|++|++..++..+....
T Consensus 463 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~ 542 (1522)
T TIGR00957 463 GVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAV 542 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--cCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccc
Q 000463 554 NIIVMWSTPVLISTLTFATALLF--GVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNE 631 (1479)
Q Consensus 554 ~~~~~~~~p~~v~~~tF~~~~l~--~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 631 (1479)
..+.+...|.++.+++|++|.+. ++.|+++.+|+++++|++++.|+..+|..+..+.++++|++||++||+.+|.++.
T Consensus 543 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~ 622 (1522)
T TIGR00957 543 GTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPD 622 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 88778889999999999998876 4679999999999999999999999999999999999999999999987765433
Q ss_pred ccccccC-CCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCeE
Q 000463 632 SVERVEG-CDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT 710 (1479)
Q Consensus 632 ~~~~~~~-~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~i 710 (1479)
..+.... ......|+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 623 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i 701 (1522)
T TIGR00957 623 SIERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSV 701 (1522)
T ss_pred cccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEE
Confidence 2111111 1112379999999999642 3579999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCE
Q 000463 711 AYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDI 790 (1479)
Q Consensus 711 ayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 790 (1479)
|||||+||++++||+|||.||.++++++|++++++|++.+|++.+|.||+|.+|++|.+|||||||||+||||+|++||+
T Consensus 702 ~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~i 781 (1522)
T TIGR00957 702 AYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI 781 (1522)
T ss_pred EEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCccCCCChhhHHHHHHHHHh--hhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcCcchHHHHHH
Q 000463 791 YLLDDVFSAVDAHTGSDIFKECVR--GALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAA 868 (1479)
Q Consensus 791 llLDep~saLD~~~~~~i~~~~~~--~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~f~~l~~~ 868 (1479)
||||||||+||+++++++++.++. +.++++|+|+|||+++.++.||+|++|++|++++.|+++++.++++.|.++...
T Consensus 782 llLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~ 861 (1522)
T TIGR00957 782 YLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRT 861 (1522)
T ss_pred EEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHh
Confidence 999999999999999999998874 466799999999999999999999999999999999999999888888887754
Q ss_pred hhhhhhhhhccccCC---CCCCCC----CC--CC----Ccc-cc---ccccccCC--Cc--cc---ccccccCCCchhhh
Q 000463 869 HETSMELVEVGKTMP---SGNSPK----TP--KS----PQI-TS---NLQEANGE--NK--SV---EQSNSDKGNSKLIK 924 (1479)
Q Consensus 869 ~~~~~~~~~~~~~~~---~~~~~~----~~--~~----~~~-~~---~~~~~~~~--~~--~~---~~~~~~~~~~~l~~ 924 (1479)
+....+..+..+..+ ..+... +. .. ... .. ........ .. .. +..+.++...+..+
T Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1522)
T TIGR00957 862 YAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLME 941 (1522)
T ss_pred hccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHH
Confidence 322111000000000 000000 00 00 000 00 00000000 00 00 00001111234567
Q ss_pred HHHHhcCcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCC--CCCCCcchhHHHHHHHHHHHHH
Q 000463 925 EEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDH--SMSFNPSLFIGVYGSTAVLSMV 1002 (1479)
Q Consensus 925 ~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~--~~~~~~~~~~~vy~~l~~~~~~ 1002 (1479)
+|+++.|.+++++|+.|+++.+ +..+++++++.++.+++..++++|+++|++... ....+...|+++|++++++..+
T Consensus 942 ~e~~~~g~v~~~~y~~Y~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~ 1020 (1522)
T TIGR00957 942 ADKAQTGQVELSVYWDYMKAIG-LFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGF 1020 (1522)
T ss_pred HHHHhcCcccHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHH
Confidence 7888899999999999999874 444555556667778888999999999986421 1122345678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000463 1003 ILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIIT 1082 (1479)
Q Consensus 1003 ~~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~ 1082 (1479)
+.+++.++....+.++++++|++++++++++|++|||++|+|+++|||++|++.+|..++..+..++..++.+++.++++
T Consensus 1021 ~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~ 1100 (1522)
T TIGR00957 1021 AVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVI 1100 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhh
Q 000463 1083 CQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRM 1162 (1479)
Q Consensus 1083 ~~~~~~~~~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~ 1162 (1479)
++.+|.++++++|+++++++++++|.+++|++++++..+++|+++|+.|+++|+.|||+|+++++|.+++.+..|.++++
T Consensus 1101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~ 1180 (1522)
T TIGR00957 1101 LLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKA 1180 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 000463 1163 DFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQF 1242 (1479)
Q Consensus 1163 ~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~ 1242 (1479)
.+.....++|++.++++++.+++.++..+.+ ...+.+++|.+|++++|+..+..++.++++.+.++|+.++|+||+.+|
T Consensus 1181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~ 1259 (1522)
T TIGR00957 1181 YYPSIVANRWLAVRLECVGNCIVLFAALFAV-ISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEY 1259 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998765554444433 235678999999999999999999999999999999999999999999
Q ss_pred hcCccchhccccCCCCCCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCC
Q 000463 1243 TEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS 1322 (1479)
Q Consensus 1243 ~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~ 1322 (1479)
.+.|+|.+...+...+++.||.+|.|+|+||+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+++|+
T Consensus 1260 ~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~ 1339 (1522)
T TIGR00957 1260 SETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA 1339 (1522)
T ss_pred hcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC
Confidence 99888765333344566789999999999999999987778999999999999999999999999999999999999999
Q ss_pred ccEEEEcCEecCCCChhhhhcceEEEcCccccccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCC
Q 000463 1323 GGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSG 1402 (1479)
Q Consensus 1323 ~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1402 (1479)
+|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+|||+||++|+++++|.++|+||||+|+|+|
T Consensus 1340 ~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G 1419 (1522)
T TIGR00957 1340 EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGG 1419 (1522)
T ss_pred CCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1403 DNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1403 ~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
.||||||||||||||||||+|+|||||||||+||.+||+.||++|++.|++||||+||||++|+++||||+|||+|+
T Consensus 1420 ~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~ 1496 (1522)
T TIGR00957 1420 ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGE 1496 (1522)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-196 Score=1992.28 Aligned_cols=1218 Identities=29% Similarity=0.490 Sum_probs=1069.7
Q ss_pred CCCcccCchhHHHHHHhHHHHHHccccCCCCCCCCCCCCccchHHHHHHHHHhcCCCCC--CCCCcchHHHHHHHHHHHH
Q 000463 253 VSGFASASILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFESKWPKPH--EKCKHPVRTTLLRCFWKEV 330 (1479)
Q Consensus 253 ~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~--~~~~~~l~~~l~~~~~~~~ 330 (1479)
.+||++||++||++|||++|++++|||++|+.+|||+|+++++++.++++|++.|+++. +.++++|+++++++||+.+
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~L~~~l~~~~~~~~ 82 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASAKKNPKLLNALRRCFFWRF 82 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999998643 2456899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 331 AFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSS-FYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLY 409 (1479)
Q Consensus 331 ~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~-~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~riR~~L~~~Iy 409 (1479)
++.++++++.+++.+++|++++.+|+|++.++.. .+.||+++++++++.++++++.++++|...++|+++|++|+++||
T Consensus 83 ~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy 162 (1490)
T TIGR01271 83 VFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIY 162 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999643322 457999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 410 RKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGIIGVMIFVVMGT 489 (1479)
Q Consensus 410 ~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~~~~~~w~~plqi~lal~lL~~~lG~s~l~gl~~~il~~~~~~~~~ 489 (1479)
+|+|+++..+.++.++|+++|+|++|++++.+++.++|.+|..|+++++++++||.++|+++++|++++++++|++.+++
T Consensus 163 ~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~ 242 (1490)
T TIGR01271 163 KKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLG 242 (1490)
T ss_pred HHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 490 KRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMWSTPVLISTLT 569 (1479)
Q Consensus 490 ~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~~~~p~~v~~~t 569 (1479)
+++.++++++|+.+|+|++.++|+|+|||+||+|+||+.|.++|++.|++|++.+++..++.+...++++..|.++++++
T Consensus 243 ~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (1490)
T TIGR01271 243 QKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLS 322 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888889999999999
Q ss_pred HHHHHHhcCccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccCcccccccccCCCCCccEEEE
Q 000463 570 FATALLFGVPLDAGSVFTTTTIFKILQEPIR-NFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVR 648 (1479)
Q Consensus 570 F~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~-~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i~~~ 648 (1479)
|++|.+.++ ++++++||++++|++|+.|+. .+|..+..+.++.+|++||++||..+|.++.... .....++++
T Consensus 323 f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~-----~~~~~i~~~ 396 (1490)
T TIGR01271 323 VVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYN-----LTTTEVEMV 396 (1490)
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccc-----CCCCceEEe
Confidence 999988754 789999999999999999985 7999999999999999999999998876432110 122369999
Q ss_pred eeEEEecCC-------------------------------CCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCc
Q 000463 649 DGVFSWDDE-------------------------------NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 649 ~~~f~~~~~-------------------------------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~ 697 (1479)
|++|+|+.. ..+++|+|+||+|++|++++|+|||||||||||++|+|++
T Consensus 397 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~ 476 (1490)
T TIGR01271 397 NVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL 476 (1490)
T ss_pred cceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 999999531 0146899999999999999999999999999999999999
Q ss_pred ccCCcEEEECCeEEEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHH
Q 000463 698 HKISGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQR 777 (1479)
Q Consensus 698 ~~~~G~i~~~g~iayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 777 (1479)
+|++|+|.++|++|||+|+||++++||+|||+||.++++++|++++++|+|.+|++.+|.||+|.+|++|.+||||||||
T Consensus 477 ~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqR 556 (1490)
T TIGR01271 477 EPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRAR 556 (1490)
T ss_pred CCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHH
Confidence 99999999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHh
Q 000463 778 IQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 778 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
|+||||+|++|++|||||||||||+++++++++.++....+|+|+|+|||+++.++.||+|++|++|++++.|+++++.+
T Consensus 557 i~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 557 ISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988877778999999999999999999999999999999999999987
Q ss_pred cCcchHHHHHHhhhhhh------------h-----hh-cc-----c-c------CCCCCC-CC-----------------
Q 000463 858 SGMDFGALVAAHETSME------------L-----VE-VG-----K-T------MPSGNS-PK----------------- 889 (1479)
Q Consensus 858 ~~~~f~~l~~~~~~~~~------------~-----~~-~~-----~-~------~~~~~~-~~----------------- 889 (1479)
.+..|...........+ . .+ .. . . .+.... .+
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1490)
T TIGR01271 637 KRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARKFS 716 (1490)
T ss_pred cChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66666555431100000 0 00 00 0 0 000000 00
Q ss_pred ------------C-C-CCCcc--------cc-----------cc--------------------ccccCCCcc-------
Q 000463 890 ------------T-P-KSPQI--------TS-----------NL--------------------QEANGENKS------- 909 (1479)
Q Consensus 890 ------------~-~-~~~~~--------~~-----------~~--------------------~~~~~~~~~------- 909 (1479)
. . ..... +. .. .....+.+.
T Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1490)
T TIGR01271 717 FVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQTSF 796 (1490)
T ss_pred cccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccc
Confidence 0 0 00000 00 00 000000000
Q ss_pred -------------cc--------ccc----------ccCCCchhhhHHHHhcCcchHHHHHHHHHHhhhhHHHHHHHHHH
Q 000463 910 -------------VE--------QSN----------SDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLS 958 (1479)
Q Consensus 910 -------------~~--------~~~----------~~~~~~~l~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~l~~~ 958 (1479)
.. ..+ .+.....+.++|+++.|.++|++|+.|+++.+++..+++++++.
T Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~~~~ 876 (1490)
T TIGR01271 797 RKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCLVI 876 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 00 000 00001234667788899999999999999876666555666667
Q ss_pred HHHHHHhhhhhhhcccccccC------CCC-C-----------C-Ccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 959 VAWQGSLMAGDYWLSYETSED------HSM-S-----------F-NPSLF-IGVYGSTAVLSMVILVVRAYFVTHVGLKT 1018 (1479)
Q Consensus 959 ~~~~~~~~~~~~wl~~~~~~~------~~~-~-----------~-~~~~~-~~vy~~l~~~~~~~~~~~~~~~~~~~~~~ 1018 (1479)
++.+++..+.++|+.+|.+.. ... . . ....| +++|++++++..++.+++.+++.+.+.++
T Consensus 877 ~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1490)
T TIGR01271 877 FLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTV 956 (1490)
T ss_pred HHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999998876421 000 0 0 11122 45566666666778888999999999999
Q ss_pred HHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000463 1019 AQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAW 1098 (1479)
Q Consensus 1019 s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~ 1098 (1479)
++++|.+++++++++|++||+++|+|+++|||++|++.+|..++..+..++..++.+++.++++++.+|+++++++|+++
T Consensus 957 ~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~ 1036 (1490)
T TIGR01271 957 SKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAV 1036 (1490)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888889888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHH
Q 000463 1099 ANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLE 1178 (1479)
Q Consensus 1099 ~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~ 1178 (1479)
++++++++|.+.+|++++++..+++|+++||.|+++|+.|||+|+++++|.+++.+..|.+.+..+.....++|+..+++
T Consensus 1037 ~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~ 1116 (1490)
T TIGR01271 1037 IFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRID 1116 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhcccc----
Q 000463 1179 LLGSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKME---- 1254 (1479)
Q Consensus 1179 ~l~~~~~~~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~---- 1254 (1479)
+++.+.+..+.++.+. ...+++|.+|++++|++.+...+.++++.+.++|+.+.|+||+.+|.+.|+|.+...+
T Consensus 1117 ~i~~~~~~~~~~l~~~--~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~ 1194 (1490)
T TIGR01271 1117 IIFVFFFIAVTFIAIG--TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGK 1194 (1490)
T ss_pred HHHHHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccc
Confidence 9876654443333222 2345778899999999999999999999999999999999999999998877542111
Q ss_pred ----------CCCCCCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCcc
Q 000463 1255 ----------DRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGG 1324 (1479)
Q Consensus 1255 ----------~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G 1324 (1479)
...+|+.||..|.|+|+||+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+++ .+|
T Consensus 1195 ~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G 1273 (1490)
T TIGR01271 1195 YQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEG 1273 (1490)
T ss_pred cccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCc
Confidence 123456799999999999999999877889999999999999999999999999999999999998 799
Q ss_pred EEEEcCEecCCCChhhhhcceEEEcCccccccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCC
Q 000463 1325 RIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDN 1404 (1479)
Q Consensus 1325 ~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1404 (1479)
+|+|||+||++++++++|++|++|||||+||+||||+||||+++++|++||+||++++++++|.++|+||||+|+|+|.|
T Consensus 1274 ~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~n 1353 (1490)
T TIGR01271 1274 EIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYV 1353 (1490)
T ss_pred EEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1405 WSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1405 LSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|||||||||||||||||+|+|||||||||+||.+||+.||++|++.|++||||+||||++|+++||||+|||+|+
T Consensus 1354 LSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ 1428 (1490)
T TIGR01271 1354 LSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSS 1428 (1490)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999996
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-187 Score=1904.93 Aligned_cols=1226 Identities=30% Similarity=0.490 Sum_probs=1061.9
Q ss_pred CCCCCcccCchhHHHHHHhHHHHHHccccCCCCCCCCCCCCccchHHHHHHHHH----------hcCCCCC---------
Q 000463 251 DVVSGFASASILSKAFWIWMNPLLSKGYKSPLKIDEIPSLSPQHRAERMSELFE----------SKWPKPH--------- 311 (1479)
Q Consensus 251 ~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~----------~~w~~~~--------- 311 (1479)
..+.||++||||.++++.|++|++.+..|..|+.+|||+...+.|+-++.-++. +.|+...
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1560)
T PTZ00243 57 YTPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLD 136 (1560)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecc
Confidence 456899999999999999999999999999999999999999999865544432 2454210
Q ss_pred ------------------------------------------------------C-------------------------
Q 000463 312 ------------------------------------------------------E------------------------- 312 (1479)
Q Consensus 312 ------------------------------------------------------~------------------------- 312 (1479)
+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (1560)
T PTZ00243 137 ASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSS 216 (1560)
T ss_pred ccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecc
Confidence 0
Q ss_pred ------------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHH
Q 000463 313 ------------KCKHPVRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKF 380 (1479)
Q Consensus 313 ------------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~ 380 (1479)
.+..+|+++++++||+.++..++++++.+++.+++|++|+.+++|+++++.....|++++++++++.+
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~ 296 (1560)
T PTZ00243 217 TGSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQL 296 (1560)
T ss_pred cccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH
Confidence 01237999999999999999999999999999999999999999997665433468899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 381 VEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQ--AHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISV 458 (1479)
Q Consensus 381 ~~~~~~~~~~~~~~~~g~riR~~L~~~Iy~K~L~ls~~~~~--~~~~G~ivnlms~D~~ri~~~~~~~~~~w~~plqi~l 458 (1479)
+++++.++|+|...+.|+++|++|.+.+|+|+++++..+.+ +.++|+++|+|++|++++.+++.++|.+|.+|+++++
T Consensus 297 ~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~ 376 (1560)
T PTZ00243 297 IQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLL 376 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987765 5689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHH
Q 000463 459 ALILLYNCLGASVITTVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRE 538 (1479)
Q Consensus 459 al~lL~~~lG~s~l~gl~~~il~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~ 538 (1479)
++++||..+|+++++|++++++++|++.++++++.++++++|+.+|+|++.++|+++|||+||+||||+.|.++|++.|+
T Consensus 377 ~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~ 456 (1560)
T PTZ00243 377 SILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRA 456 (1560)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 539 SEFGWLTKFMYSISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLAR 618 (1479)
Q Consensus 539 ~El~~l~k~~~~~a~~~~~~~~~p~~v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~R 618 (1479)
+|++.+++..+..++..++++++|.++++++|++|++.|++||++++|+++++|++++.|+.++|..++.+.++.+|++|
T Consensus 457 ~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~R 536 (1560)
T PTZ00243 457 RELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKR 536 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccCccccc----cc-----------------------------cc-------------------------CCC
Q 000463 619 LDKYMLSRELVNESV----ER-----------------------------VE-------------------------GCD 640 (1479)
Q Consensus 619 I~~fL~~~e~~~~~~----~~-----------------------------~~-------------------------~~~ 640 (1479)
|++||..+|...... +. .+ ...
T Consensus 537 I~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1560)
T PTZ00243 537 ISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRH 616 (1560)
T ss_pred HHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccc
Confidence 999998776311000 00 00 000
Q ss_pred CCccEEEEeeEEEecCC-------------------------------------CCcccceeeeEEEeCCcEEEEEcCCC
Q 000463 641 DNIAVEVRDGVFSWDDE-------------------------------------NGEECLKNINLEIKKGDLTAIVGTVG 683 (1479)
Q Consensus 641 ~~~~i~~~~~~f~~~~~-------------------------------------~~~~~L~~i~l~i~~G~~~~ivG~~G 683 (1479)
....+.++|++|+|+.. +++++|+|+||+|++|++++|+||||
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nG 696 (1560)
T PTZ00243 617 PSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATG 696 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCC
Confidence 11245667766664310 13468999999999999999999999
Q ss_pred CChHHHHHHHhcCcccCCcEEEECCeEEEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCcccc
Q 000463 684 SGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEI 763 (1479)
Q Consensus 684 sGKSTLl~~llG~~~~~~G~i~~~g~iayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~i 763 (1479)
|||||||++|+|+++|++|+|.+++++|||||+||++++||+|||.|+.++++++|++++++|++++|++.+|+|++|.+
T Consensus 697 sGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i 776 (1560)
T PTZ00243 697 SGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEI 776 (1560)
T ss_pred CcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHh
Confidence 99999999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred ccCCCccchHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeC
Q 000463 764 GERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMRE 843 (1479)
Q Consensus 764 g~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~ 843 (1479)
|++|.+|||||||||+||||+|++|++||||||||+||++++++++++++.+..+|+|+|+|||+++.++.||+|++|++
T Consensus 777 ~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~ 856 (1560)
T PTZ00243 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGD 856 (1560)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999888766689999999999999999999999999
Q ss_pred CEEEEecChHHHHhcCcchHHHHHHhhhhhhhhhccccCCCCCCCCCCCCCccccccccccCCC-cccccccccCCCchh
Q 000463 844 GMIVQSGRYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGEN-KSVEQSNSDKGNSKL 922 (1479)
Q Consensus 844 G~i~~~g~~~~l~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l 922 (1479)
|++.++|+++++.+.+ .+..+........+..+.....+......................+. ...+....+....++
T Consensus 857 G~i~~~G~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 935 (1560)
T PTZ00243 857 GRVEFSGSSADFMRTS-LYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRL 935 (1560)
T ss_pred CEEEEecCHHHHHhCh-HHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 9999999999998643 45555443211100000000000000000000000000000000000 000000111122456
Q ss_pred hhHHHHhcCcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHH
Q 000463 923 IKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMV 1002 (1479)
Q Consensus 923 ~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~ 1002 (1479)
.++|+++.|.++|++|+.|++..+++..+++++++.++.+++..++++|+++|++.. ...+...|+++|+++.++..+
T Consensus 936 ~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~--~~~~~~~~l~~y~~~~~~~~~ 1013 (1560)
T PTZ00243 936 MTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRS--FKLSAATYLYVYLGIVLLGTF 1013 (1560)
T ss_pred hhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cCCCcccHHHHHHHHHHHHHH
Confidence 777888899999999999999887666656666666777888899999999998632 123345788899998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000463 1003 ILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIIT 1082 (1479)
Q Consensus 1003 ~~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~ 1082 (1479)
+.+++.+.....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++
T Consensus 1014 ~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~ 1093 (1560)
T PTZ00243 1014 SVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVT 1093 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhh
Q 000463 1083 CQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRM 1162 (1479)
Q Consensus 1083 ~~~~~~~~~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~ 1162 (1479)
++.+|.++++++|+.++++.+.++|.+..|+++|....+++|++++++|+++|+.|||+|+.++.|.+++.+..|.+.+.
T Consensus 1094 ~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~ 1173 (1560)
T PTZ00243 1094 SASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSC 1173 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 98888877788888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH---HhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 000463 1163 DFHNNGSNEWLGFRLELLGSFTFCLATLFMI---LLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERI 1239 (1479)
Q Consensus 1163 ~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v---~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi 1239 (1479)
.+.....++|+++++++++.++.++.+++.+ ....+.+++|.++++++|+..+...+.++++.+.++|+.+.|+||+
T Consensus 1174 ~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi 1253 (1560)
T PTZ00243 1174 SYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERL 1253 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998776554443332 2233456789999999999999999999999999999999999999
Q ss_pred HHhhc-Cccchhcc-----------------------ccCCCCC---CCCCCCccEEEEeeeeeecCCCCcceeeeeEEE
Q 000463 1240 KQFTE-IPSEAAWK-----------------------MEDRLPP---PNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSI 1292 (1479)
Q Consensus 1240 ~~~~~-~~~E~~~~-----------------------~~~~~~~---~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I 1292 (1479)
.+|.+ .|+|+... .+...++ +.||..|.|+|+||+|+|+++.++||+||||+|
T Consensus 1254 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I 1333 (1560)
T PTZ00243 1254 LYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRI 1333 (1560)
T ss_pred HHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEE
Confidence 99996 44432110 0011122 235677999999999999988788999999999
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCccccccccHhhhcCCCCCCCHH
Q 000463 1293 HGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDE 1372 (1479)
Q Consensus 1293 ~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ 1372 (1479)
+||||||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+
T Consensus 1334 ~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sde 1413 (1560)
T PTZ00243 1334 APREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSA 1413 (1560)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccC-CCEEEEeCCCCCCCHHhHHHHHHHHHHHc
Q 000463 1373 EIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKH-SRLLFMDEATASVDSQTDAEIQRIIREEF 1451 (1479)
Q Consensus 1373 eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~-~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f 1451 (1479)
|||+||++|+++++|.++|+||||.|+|+|.|||||||||||||||||++ |+|||||||||+||.+||+.||++|++.|
T Consensus 1414 eI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~ 1493 (1560)
T PTZ00243 1414 EVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF 1493 (1560)
T ss_pred HHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999996 89999999999999999999999999999
Q ss_pred CCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1452 AACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1452 ~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
++||||+||||++|+++||||+|||+|+
T Consensus 1494 ~~~TvI~IAHRl~ti~~~DrIlVLd~G~ 1521 (1560)
T PTZ00243 1494 SAYTVITIAHRLHTVAQYDKIIVMDHGA 1521 (1560)
T ss_pred CCCEEEEEeccHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999996
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-140 Score=1326.17 Aligned_cols=1066 Identities=22% Similarity=0.286 Sum_probs=800.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 000463 385 STHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMML-----QLHAVWLMPLQISVA 459 (1479)
Q Consensus 385 ~~~~~~~~~~~~g~riR~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~-----~~~~~w~~plqi~la 459 (1479)
....|.+.+.|...|+|.....++.|+-. ...+.++.|++++-|+.|+++|++++. ++|.+-....-++++
T Consensus 91 q~~c~~~~geRq~~riR~~yl~~iLrQdi----~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~ 166 (1228)
T KOG0055|consen 91 QVSCWMRTGERQTARIRSKYLKAILRQDI----GWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIG 166 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcc----ceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999888877766554 344455669999999999999999874 555555544455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHH
Q 000463 460 LILLYNCLGASVITTVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRES 539 (1479)
Q Consensus 460 l~lL~~~lG~s~l~gl~~~il~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~ 539 (1479)
++.-|+ -+++++.+..++.......++.+.+...+..++.-+--....|.+.+||++-.++-|+...+|-.+.
T Consensus 167 F~~~W~----Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~--- 239 (1228)
T KOG0055|consen 167 FYYGWK----LTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKA--- 239 (1228)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHH---
Confidence 555443 3455555555555666677777777777777777777789999999999999999999877765443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 540 EFGWLTKFMYSISGNIIVMWSTP------VLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAM 613 (1479)
Q Consensus 540 El~~l~k~~~~~a~~~~~~~~~p------~~v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~ 613 (1479)
++..+|+....++...+..... .....++||...+..+..+++.+|+++...-+-...|.+..+.+..+.+|+
T Consensus 240 -L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~ 318 (1228)
T KOG0055|consen 240 -LENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKAR 318 (1228)
T ss_pred -HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccc
Confidence 3333333333332222222222 222344566566666779999999988555555567888889999999999
Q ss_pred HHHHHHHHHhcccc-CcccccccccCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHH
Q 000463 614 ISLARLDKYMLSRE-LVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLAS 692 (1479)
Q Consensus 614 vS~~RI~~fL~~~e-~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ 692 (1479)
++..+|.+-++..+ .++...+.......++.|+++|+.|+|+.+++.++|+|+||+|++|+.+|+|||+||||||++++
T Consensus 319 ~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~L 398 (1228)
T KOG0055|consen 319 AAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQL 398 (1228)
T ss_pred cchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHH
Confidence 99999999987643 33332122222335678999999999998888899999999999999999999999999999999
Q ss_pred HhcCcccCCcEEEECC-------------eEEEEeccCcCCCCcHHHHHhcCCCC-ChhhHHHHHHHhchHHHHHhcccC
Q 000463 693 ILGEMHKISGKVKVCG-------------TTAYVAQTSWIQNGTIEENILFGLPM-NRAKYGEVVRVCCLEKDLEMMEYG 758 (1479)
Q Consensus 693 llG~~~~~~G~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~fg~~~-~~~~~~~v~~~~~l~~dl~~l~~g 758 (1479)
|.|.++|++|+|.++| ++|.|+|+|.+|++||+|||.||+|- ..+...++.+.....+.+..+|+|
T Consensus 399 L~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g 478 (1228)
T KOG0055|consen 399 LARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDG 478 (1228)
T ss_pred HHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHh
Confidence 9999999999999998 38999999999999999999999864 344455555555666778899999
Q ss_pred CccccccCCCccchHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEE
Q 000463 759 DQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLI 838 (1479)
Q Consensus 759 d~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i 838 (1479)
++|.+||+|.+|||||||||||||||.+||+||||||||||||+++.+.+ +++++.+.+|+|.|+|+|+++.+++||+|
T Consensus 479 ~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~V-q~ALd~~~~grTTivVaHRLStIrnaD~I 557 (1228)
T KOG0055|consen 479 YDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVV-QEALDKASKGRTTIVVAHRLSTIRNADKI 557 (1228)
T ss_pred hcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHH-HHHHHHhhcCCeEEEEeeehhhhhccCEE
Confidence 99999999999999999999999999999999999999999999987655 67888888999999999999999999999
Q ss_pred EEEeCCEEEEecChHHHHhcCcchHHHHHHhhhhhhhhhccccCC-CCCCCCCCCCC-ccccccccccCCCccccccccc
Q 000463 839 LVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVEVGKTMP-SGNSPKTPKSP-QITSNLQEANGENKSVEQSNSD 916 (1479)
Q Consensus 839 ~~l~~G~i~~~g~~~~l~~~~~~f~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 916 (1479)
++|++|+|++.|+++||++.++.|.++++.++......+.+.+.+ ..........+ ...+..+............+.+
T Consensus 558 ~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e 637 (1228)
T KOG0055|consen 558 AVMEEGKIVEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGE 637 (1228)
T ss_pred EEEECCEEEEecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCcccccccccccccc
Confidence 999999999999999999999999999988754432211000000 00000000000 0000000000000000000000
Q ss_pred CCCchhhhHHHHhcCcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhccc----cc-ccCCCCCCCcchhHH
Q 000463 917 KGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSY----ET-SEDHSMSFNPSLFIG 991 (1479)
Q Consensus 917 ~~~~~l~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~----~~-~~~~~~~~~~~~~~~ 991 (1479)
+..... .+++ -.+++....+|.+. .|+..++..++.++.........+.+++ .. ...+........|..
T Consensus 638 ~~~~~~-~~~~---~~~s~~~i~k~~~p--e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al 711 (1228)
T KOG0055|consen 638 DPEEPV-SEED---EKVSFWRIFKLNKP--EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWAL 711 (1228)
T ss_pred cccccc-cccc---ccccHHHHHHhccc--hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 000011 1111 22333333333332 3443333333333322222111111111 11 110111112345889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecc--cCchhhHHHHhchhhHhhhhhHHHHHHHH
Q 000463 992 VYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDT--TPSGRILSRASTDQTNIDLFLPFFVGITV 1069 (1479)
Q Consensus 992 vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~--~~~G~ilnR~s~D~~~id~~l~~~~~~~~ 1069 (1479)
+|.++++.+.++.+++.+++...|.+..+++|.++|+++++.+++|||. +. |+|.+|+++|...+...+...+..++
T Consensus 712 ~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv 790 (1228)
T KOG0055|consen 712 IFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVV 790 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999996 45 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcH
Q 000463 1070 AMYITLLGIFIITCQYAWPTIFLV---IPLAWANYWYRGYYLST-SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQ 1145 (1479)
Q Consensus 1070 ~~~~~~~~~~~v~~~~~~~~~~~~---ip~~~~~~~~~~~y~~~-~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~ 1145 (1479)
+.+..++..+++.++++|.+.+++ .|++.+..+.+.+++.. .++.+. ..........|++.+++||++|+.|
T Consensus 791 ~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~----~~~ea~~iA~eai~NIrTV~al~~e 866 (1228)
T KOG0055|consen 791 QNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKK----AYEEASKIAIEAVSNIRTVAALCAE 866 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHHHHHhHHHHHHHhhH
Confidence 999999999999999999987665 56665555555554433 232222 2233446789999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHH----HHHhccCCcChhHHHHHHHHHHHHHHHHHH
Q 000463 1146 TTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLF----MILLPSSIIKPENVGLSLSYGLSLNGVLFW 1221 (1479)
Q Consensus 1146 ~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~----~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~ 1221 (1479)
++|.+.+.+.++...+..+.. ..|-++...+-..++++.-++. ..+...+.+++..+-..+.-...-...+..
T Consensus 867 ~~~~~~y~~~l~~p~~~~~~~---~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~ 943 (1228)
T KOG0055|consen 867 EKFMELYKEELEKPRKSSFKR---GLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQ 943 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888776655443 3355555555555444433322 234456666665543332222222233444
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCccEEEEeeeeeecCCC-CcceeeeeEEEeCCcEEEE
Q 000463 1222 AIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNT-PLVLKGITLSIHGGEKIGV 1300 (1479)
Q Consensus 1222 ~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~-~~vL~~is~~I~~GekvgI 1300 (1479)
......++-+...|+.++.+..+-+++-+...+.. ....+.+|+|+|+||+|+||..+ .+||+|+|++|++||++|+
T Consensus 944 ~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~--~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvAL 1021 (1228)
T KOG0055|consen 944 ASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSG--GKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVAL 1021 (1228)
T ss_pred HHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCC--CccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEE
Confidence 55566778888899999999998766432111111 11123689999999999997442 3699999999999999999
Q ss_pred ECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCccccccccHhhhcCCC-CCCCHHHHHHHHH
Q 000463 1301 VGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPI-GQYSDEEIWKSLE 1379 (1479)
Q Consensus 1301 VGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~ 1379 (1479)
||||||||||++.+|.|+|+|.+|.|.|||+||+++++++||++|++|.|||.||++||||||... .+.+.+||.+|++
T Consensus 1022 VG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak 1101 (1228)
T KOG0055|consen 1022 VGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAK 1101 (1228)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999876 3579999999999
Q ss_pred HcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEE
Q 000463 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISI 1459 (1479)
Q Consensus 1380 ~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~I 1459 (1479)
.+++|+||.++|+||||.|||+|.+||||||||||||||++||||||+||||||+||.++|+.+|++|++...+||+|+|
T Consensus 1102 ~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvI 1181 (1228)
T KOG0055|consen 1102 LANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVI 1181 (1228)
T ss_pred HhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhhhhhcCEEEEEeCCC
Q 000463 1460 AHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1460 AHRl~ti~~~DrIlVL~~G~ 1479 (1479)
||||+||++||.|.|+++|+
T Consensus 1182 AHRLSTIqnaD~I~Vi~~G~ 1201 (1228)
T KOG0055|consen 1182 AHRLSTIQNADVIAVLKNGK 1201 (1228)
T ss_pred ecchhhhhcCCEEEEEECCE
Confidence 99999999999999999996
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-130 Score=1328.41 Aligned_cols=1151 Identities=18% Similarity=0.198 Sum_probs=824.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 319 RTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGM 398 (1479)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~ 398 (1479)
++...+.+++.++++.++.++..++..+.|+++..+++-+..++. . ..++..+++..++..++...+.+...+++.
T Consensus 51 ~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~-~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 126 (1466)
T PTZ00265 51 FKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN-V---NDIIFSLVLIGIFQFILSFISSFCMDVVTT 126 (1466)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334567777888888888888888999999999986632211 1 122233333344444444455556677888
Q ss_pred HHHHHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000463 399 LIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMML-QLHAVWLMPLQISVALILLYNCLGA-SVITTVV 476 (1479)
Q Consensus 399 riR~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~lal~lL~~~lG~-s~l~gl~ 476 (1479)
++...+...+|+|.++++.........|++.|.++.|++.+.+++. .+..+....+.++.++++++. +.| -+++.++
T Consensus 127 ~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~-~sw~Lalv~l~ 205 (1466)
T PTZ00265 127 KILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF-KNARLTLCITC 205 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 8888888999999999998888888899999999999999988763 444445555555555544443 232 2333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 477 GIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNII 556 (1479)
Q Consensus 477 ~~il~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~ 556 (1479)
++.+++.+..++.++.++..++..+..++..+.+.|.++|||+||.|+-|+.+.++..+..+.-.+...+.....+....
T Consensus 206 ~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~ 285 (1466)
T PTZ00265 206 VFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIG 285 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566777788888888888889999999999999999999999999888876554444433333333333222
Q ss_pred HHHHHHH--HHHHHHHHHHHHhcC--------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000463 557 VMWSTPV--LISTLTFATALLFGV--------PLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSR 626 (1479)
Q Consensus 557 ~~~~~p~--~v~~~tF~~~~l~~~--------~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~ 626 (1479)
+...... .+.+++|+.+....+ .++++.+++.+...-+...++..+...+..+..+.+|.+||.+.++.+
T Consensus 286 ~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~ 365 (1466)
T PTZ00265 286 MINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRK 365 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2222111 223445666665542 578888887665444444555666667889999999999999999865
Q ss_pred cCcccccccccCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEE
Q 000463 627 ELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKV 706 (1479)
Q Consensus 627 e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~ 706 (1479)
+..+...+..... ....|+++|++|+|+..++.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus 366 ~~~~~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 444 (1466)
T PTZ00265 366 PLVENNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIII 444 (1466)
T ss_pred CCCCCCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEE
Confidence 4322111111111 123699999999997544457999999999999999999999999999999999999999999999
Q ss_pred C-C-------------eEEEEeccCcCCCCcHHHHHhcCCCC--------------------------------------
Q 000463 707 C-G-------------TTAYVAQTSWIQNGTIEENILFGLPM-------------------------------------- 734 (1479)
Q Consensus 707 ~-g-------------~iayv~Q~~~i~~~Tv~enI~fg~~~-------------------------------------- 734 (1479)
+ | .+|||+|+|.++++||+|||.+|...
T Consensus 445 ~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (1466)
T PTZ00265 445 NDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLND 524 (1466)
T ss_pred eCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhh
Confidence 4 4 27999999999999999999997521
Q ss_pred --------------------ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEEEe
Q 000463 735 --------------------NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLD 794 (1479)
Q Consensus 735 --------------------~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLD 794 (1479)
+++...++++.+++.+.+..+|.|.+|.+|++|.+|||||||||+||||++++|+|+|||
T Consensus 525 ~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLD 604 (1466)
T PTZ00265 525 MSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILD 604 (1466)
T ss_pred cccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 112334455566778888899999999999999999999999999999999999999999
Q ss_pred CccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCcccccCCEEEEEeCC-----------------------------
Q 000463 795 DVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHNVDLILVMREG----------------------------- 844 (1479)
Q Consensus 795 ep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~~D~i~~l~~G----------------------------- 844 (1479)
||||+||+++++.+.+.+.+... +|+|+|+|||+++.+..||+|++|++|
T Consensus 605 EpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1466)
T PTZ00265 605 EATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKD 684 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccccc
Confidence 99999999999998766554433 589999999999999889999999986
Q ss_pred ------------------EEEEecChHHHHh-cCcchHHHHHHhhhhhhhhhcc--ccCCC--CCCCCCCC--C-Ccccc
Q 000463 845 ------------------MIVQSGRYNALLN-SGMDFGALVAAHETSMELVEVG--KTMPS--GNSPKTPK--S-PQITS 898 (1479)
Q Consensus 845 ------------------~i~~~g~~~~l~~-~~~~f~~l~~~~~~~~~~~~~~--~~~~~--~~~~~~~~--~-~~~~~ 898 (1479)
+|+++|+++|+++ .++.|..+++.+.......... +.... ....+... . .....
T Consensus 685 ~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (1466)
T PTZ00265 685 DNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMN 764 (1466)
T ss_pred cccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccccccccccccccc
Confidence 5999999999997 6889999987653221110000 00000 00000000 0 00000
Q ss_pred -c--cccccCC-Ccccccc-c--cc-CCCchhhhHHHH----hcCcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 000463 899 -N--LQEANGE-NKSVEQS-N--SD-KGNSKLIKEEER----ETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLM 966 (1479)
Q Consensus 899 -~--~~~~~~~-~~~~~~~-~--~~-~~~~~l~~~e~~----~~g~v~~~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~ 966 (1479)
. .+..... ....... . .+ ....+....++. ......+..+++++...... +++.+++.++..++..
T Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 842 (1466)
T PTZ00265 765 GNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKD--VTIIALSILVAGGLYP 842 (1466)
T ss_pred ccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 0 0000000 0000000 0 00 000000000000 00111222333343322221 2222222233333333
Q ss_pred hhhhhcccccccCCC---CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecc--c
Q 000463 967 AGDYWLSYETSEDHS---MSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDT--T 1041 (1479)
Q Consensus 967 ~~~~wl~~~~~~~~~---~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~--~ 1041 (1479)
..++.++.+.+.... .......|..++++++++..++.+++.++....+.+...+++.+++++++++|++|||+ +
T Consensus 843 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~ 922 (1466)
T PTZ00265 843 VFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKH 922 (1466)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCC
Confidence 333333333221000 01112346677777888888999999999999999999999999999999999999986 8
Q ss_pred CchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--
Q 000463 1042 PSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLS--TSRELTRL-- 1117 (1479)
Q Consensus 1042 ~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~y~~--~~r~l~rl-- 1117 (1479)
++|++++|+++|++.+...+...+..++..++.+++.++++++++|.+.++++|+.++.........+ ..++.++.
T Consensus 923 ~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1466)
T PTZ00265 923 APGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEI 1002 (1466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 89999999999999999998888888888888999988999999998877766654433222111111 11111111
Q ss_pred -----------HHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHH
Q 000463 1118 -----------DSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFC 1186 (1479)
Q Consensus 1118 -----------~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~ 1186 (1479)
+....+.....+.|+++|++|||+|+.|+++.+++.+..+...+..........++....+++..+..+
T Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1082 (1466)
T PTZ00265 1003 NQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINS 1082 (1466)
T ss_pred cccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122345567899999999999999999999999998888776665554433333333333333333332
Q ss_pred HHHHH-HHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCC-CCCCCC
Q 000463 1187 LATLF-MILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLP-PPNWPA 1264 (1479)
Q Consensus 1187 ~~~~~-~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~-~~~wp~ 1264 (1479)
++.++ ..++..+.++.|.+...+.+.+.....+..+...+.+++....+.+|+.++++.+++.+........ ++..+.
T Consensus 1083 ~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~ 1162 (1466)
T PTZ00265 1083 FAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDI 1162 (1466)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCC
Confidence 22222 3344567788877655554444333455667778888999999999999999876543211111111 001234
Q ss_pred CccEEEEeeeeeecCC-CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC----------------------
Q 000463 1265 HGNVDLIDLQVRYRSN-TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP---------------------- 1321 (1479)
Q Consensus 1265 ~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p---------------------- 1321 (1479)
.|.|+|+||+|+|+.+ ..+||+|+||+|+|||++||||+||||||||+++|.|+|+|
T Consensus 1163 ~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1163 KGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred CceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 6889999999999743 23699999999999999999999999999999999999999
Q ss_pred --------------------------------CccEEEEcCEecCCCChhhhhcceEEEcCccccccccHhhhcCCC-CC
Q 000463 1322 --------------------------------SGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPI-GQ 1368 (1479)
Q Consensus 1322 --------------------------------~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~ 1368 (1479)
++|+|+|||+||+++++++||++|++|||||+||+|||||||... ++
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~ 1322 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKED 1322 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCC
Confidence 699999999999999999999999999999999999999999876 46
Q ss_pred CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHH
Q 000463 1369 YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR 1448 (1479)
Q Consensus 1369 ~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~ 1448 (1479)
++|+||++|++.+++++||.++|+||||.|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++|+
T Consensus 1323 at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~ 1402 (1466)
T PTZ00265 1323 ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIV 1402 (1466)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHc--CCcEEEEEccChhhhhhcCEEEEEeC
Q 000463 1449 EEF--AACTIISIAHRIPTVMDCDRVIVVDA 1477 (1479)
Q Consensus 1449 ~~f--~~~TvI~IAHRl~ti~~~DrIlVL~~ 1477 (1479)
+.. +++|+|+||||++++++||+|+||++
T Consensus 1403 ~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1403 DIKDKADKTIITIAHRIASIKRSDKIVVFNN 1433 (1466)
T ss_pred HHhccCCCEEEEEechHHHHHhCCEEEEEeC
Confidence 874 69999999999999999999999999
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-85 Score=792.28 Aligned_cols=539 Identities=21% Similarity=0.309 Sum_probs=451.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccC---CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 000463 935 LHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSED---HSMSFNPSLFIGVYGSTAVLSMVILVVRAYFV 1011 (1479)
Q Consensus 935 ~~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~---~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~ 1011 (1479)
+...+.|.+... +.+...+++.++.....++.|+++...+|.- .+..........+..++.++++++..+|.+++
T Consensus 135 ~~rl~~l~~~~~--~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 135 LKRLLGLLKPEW--KWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred HHHHHHHhchhH--HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556665432 2233333334444555666666665433321 11111223456667778888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000463 1012 THVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIF 1091 (1479)
Q Consensus 1012 ~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1091 (1479)
.+.+.+...+++..+|++++++.++|||.+.+|++++|+++|...+-..++..+...+.+.++.++.+++|+..+|.+..
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltl 292 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTL 292 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhH
Q 000463 1092 LVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNE 1171 (1479)
Q Consensus 1092 ~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 1171 (1479)
+.+..+++...+.++|-+..|++.+..+++-+.......|.+.+++|||+|+.|+.-.++|.+.++...+.......+.-
T Consensus 293 v~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~ 372 (716)
T KOG0058|consen 293 VTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYG 372 (716)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66555555555666666666777777777888888999999999999999999999888888888776665543333332
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchh
Q 000463 1172 WLGFRLELLGSFTFCLA-TLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAA 1250 (1479)
Q Consensus 1172 wl~~~l~~l~~~~~~~~-~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~ 1250 (1479)
-+.-..++.+......+ .....+...+.+++|.+--.+.|...+...+.++...+.++-+.+.|.+|+.||++.+|.-+
T Consensus 373 ~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~ 452 (716)
T KOG0058|consen 373 IFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIP 452 (716)
T ss_pred HhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCC
Confidence 22233344444333322 22344556788999999999999999999999999999999999999999999999876544
Q ss_pred ccccCCCCCCCCCCCccEEEEeeeeeecCCC-CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEc
Q 000463 1251 WKMEDRLPPPNWPAHGNVDLIDLQVRYRSNT-PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIID 1329 (1479)
Q Consensus 1251 ~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~-~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~ID 1329 (1479)
.. .. ..|. ..+|.|+|+||+|.||... .+||||+||+|+|||+||+|||||+||||++++|.|+|+|++|+|++|
T Consensus 453 ~~--G~-~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllD 528 (716)
T KOG0058|consen 453 LT--GT-LAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLD 528 (716)
T ss_pred CC--Cc-cccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEEC
Confidence 32 11 1222 4689999999999997552 369999999999999999999999999999999999999999999999
Q ss_pred CEecCCCChhhhhcceEEEcCccccccccHhhhcCCC-CCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCch
Q 000463 1330 GIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPI-GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVG 1408 (1479)
Q Consensus 1330 G~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1408 (1479)
|+||++++.+.||++||+|.|||+||+|||||||... .+.+||||.+|+++++.|+||.++|+||||.|||.|..||||
T Consensus 529 G~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGG 608 (716)
T KOG0058|consen 529 GVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGG 608 (716)
T ss_pred CeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccch
Confidence 9999999999999999999999999999999999753 378999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1409 QRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1409 QrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|||||||||||+|||+|||||||||+||.++|..||++|.+..+++|||+|||||+||+++|+|+|+|+|+
T Consensus 609 QKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~ 679 (716)
T KOG0058|consen 609 QKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGR 679 (716)
T ss_pred HHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-79 Score=772.67 Aligned_cols=539 Identities=25% Similarity=0.368 Sum_probs=468.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCC-CCCCCc-chhHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 935 LHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDH-SMSFNP-SLFIGVYGSTAVLSMVILVVRAYFVT 1012 (1479)
Q Consensus 935 ~~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~-~~~~~~-~~~~~vy~~l~~~~~~~~~~~~~~~~ 1012 (1479)
+..++.++.. .+....-+++..++.+++.+++++.....+|... ....+. .....++++++++..++.++|.+++.
T Consensus 142 ~~~f~~~~~~--~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~ 219 (709)
T COG2274 142 LSWFIPLLFK--YRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIA 219 (709)
T ss_pred hHhHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444432 2334455667778888899999999887776521 111122 23344556667888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000463 1013 HVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFL 1092 (1479)
Q Consensus 1013 ~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 1092 (1479)
+.+.+....+-.++++|+++.|++||+++++|++++|++ |.+.|..++...+...+...+..+..+++|++++|+++++
T Consensus 220 ~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li 298 (709)
T COG2274 220 HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLI 298 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999996 7888888888888887777788888889999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHH
Q 000463 1093 VIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEW 1172 (1479)
Q Consensus 1093 ~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~w 1172 (1479)
.+..++++..+.-...+..|+..+......+...++..|++.|+.|||+.+.|+++..+..+..++..+..+.......|
T Consensus 299 ~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~ 378 (709)
T COG2274 299 VLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALI 378 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 76666666555555555556666666666777889999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhc
Q 000463 1173 LGFRLELLGSFTFCLATLF-MILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAW 1251 (1479)
Q Consensus 1173 l~~~l~~l~~~~~~~~~~~-~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~ 1251 (1479)
......++..+...++.++ +..+..+.++.|.+-...+.+-.+++++..++..+.+++....+.+|+.+..+.|+|.+.
T Consensus 379 ~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~ 458 (709)
T COG2274 379 LNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG 458 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 8888888877766555555 445567788888888888888899999999999999999999999999999999988642
Q ss_pred cccCCCCCCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCE
Q 000463 1252 KMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331 (1479)
Q Consensus 1252 ~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~ 1331 (1479)
+..+...|+.+|+|+|+||+|+|+++.|++|+|+|++|+|||+|||||+||||||||+++|.|+|+|++|+|++||+
T Consensus 459 ---~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~ 535 (709)
T COG2274 459 ---DKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV 535 (709)
T ss_pred ---ccccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 22244556788999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhhhhcceEEEcCccccccccHhhhcCCCC-CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHH
Q 000463 1332 DISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIG-QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQR 1410 (1479)
Q Consensus 1332 dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1410 (1479)
|++++++++||++|++||||++||+|||||||...+ +.+||||++|++.+|++++|.++|.||||+|||+|.|||||||
T Consensus 536 dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQr 615 (709)
T COG2274 536 DLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR 615 (709)
T ss_pred eHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHH
Confidence 999999999999999999999999999999998654 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1411 QLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1411 Qrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|||+|||||+++|+|||||||||+||++||+.|++.|.+...+||+|+||||++|+++||||+|||+||
T Consensus 616 QrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gk 684 (709)
T COG2274 616 QRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGK 684 (709)
T ss_pred HHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999996
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-75 Score=737.84 Aligned_cols=521 Identities=26% Similarity=0.387 Sum_probs=425.1
Q ss_pred HHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000463 953 AVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILH 1032 (1479)
Q Consensus 953 ~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~il~ 1032 (1479)
+..++.++........++++....+...........+...++++.++..++.++..++..+.+.+....++.++++++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~ 97 (567)
T COG1132 18 LAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLR 97 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445556666666666644432110011122344445555566777777777888888899999999999999999
Q ss_pred CCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 1033 APMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSR 1112 (1479)
Q Consensus 1033 ~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~y~~~~r 1112 (1479)
.|+++|+++++|++++|+++|++.++..+......+....+.+++.+++++..+|.+.++++...+++......+.+..+
T Consensus 98 ~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 177 (567)
T COG1132 98 LPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSR 177 (567)
T ss_pred CCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888666666778888888899999998877665555555555555555557
Q ss_pred HHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHH-
Q 000463 1113 ELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLF- 1191 (1479)
Q Consensus 1113 ~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~- 1191 (1479)
+..+......+.+.+.+.|+++|+++||+|+.++...+++.+..+...+...........+.....++..+........
T Consensus 178 ~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (567)
T COG1132 178 KLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALG 257 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777788999999999999999999999999776666665555544443333333333323333333332222222
Q ss_pred HHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCccEEEE
Q 000463 1192 MILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLI 1271 (1479)
Q Consensus 1192 ~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~ 1271 (1479)
......+.++.|.+...+.|...+..++..+......++....+.||+.++.+.+++.... . .+..+..|+|+|+
T Consensus 258 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~---~--~~~~~~~~~I~f~ 332 (567)
T COG1132 258 GFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDP---P--DPLKDTIGSIEFE 332 (567)
T ss_pred HHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC---C--CCCCCCCCeEEEE
Confidence 2233456688899999999999999999999999999999999999999999876552211 1 1134566889999
Q ss_pred eeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCc
Q 000463 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQE 1351 (1479)
Q Consensus 1272 nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQd 1351 (1479)
||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+|||+||+++++.+||++|++||||
T Consensus 333 ~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd 411 (567)
T COG1132 333 NVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQD 411 (567)
T ss_pred EEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEccc
Confidence 999999863 4699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHhhhcCCCCC-CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeC
Q 000463 1352 PVLFEGTVRSNIDPIGQ-YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDE 1430 (1479)
Q Consensus 1352 p~LF~gTIR~NLdp~~~-~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDE 1430 (1479)
|+||+||||+||++..+ ++|||+++|+++++++|+|.++|+||||.|||+|.+||||||||||||||++|+|+||||||
T Consensus 412 ~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDE 491 (567)
T COG1132 412 PLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDE 491 (567)
T ss_pred ceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 99999999999998864 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1431 ATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1431 aTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|||++|++||+.||++|++..+++|+|+||||++|+++||+|+|||+|+
T Consensus 492 aTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~ 540 (567)
T COG1132 492 ATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGR 540 (567)
T ss_pred cccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCE
Confidence 9999999999999999998888999999999999999999999999996
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-73 Score=731.04 Aligned_cols=537 Identities=18% Similarity=0.222 Sum_probs=420.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCC--CCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 936 HVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDH--SMSFN-PSLFIGVYGSTAVLSMVILVVRAYFVT 1012 (1479)
Q Consensus 936 ~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~--~~~~~-~~~~~~vy~~l~~~~~~~~~~~~~~~~ 1012 (1479)
+.++.|++..+++ +.+.+++.++..++....++.+....+... ..... ...++.+++++.++..++.+++.++..
T Consensus 11 ~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 11 RWLKQQSKPAKRW--LNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred HHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566554333 233444445555566666666555443211 11111 122344455556677778888888999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000463 1013 HVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFL 1092 (1479)
Q Consensus 1013 ~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 1092 (1479)
..+.+....++.++++++++.|++||++.++|++++|+++|++.++..+...+..++..++.+++.+++++.++|.+.++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 168 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLI 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888888888888888888888999987766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHH
Q 000463 1093 VIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEW 1172 (1479)
Q Consensus 1093 ~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~w 1172 (1479)
++..+++..++...+.+..++..+......+.+.+++.|+++|+.+||+|++|+++.+++.+..++..+..........+
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK11174 169 LLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFL 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444444444445555555555666666788899999999999999999999999998887777766655444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcChhHH----H-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 000463 1173 LGFRLELLGSFTFCLATLFMILLPSSIIKPENV----G-----LSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFT 1243 (1479)
Q Consensus 1173 l~~~l~~l~~~~~~~~~~~~v~~~~~~~~~g~v----g-----l~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~ 1243 (1479)
......++..+...+..++......+.++.|.+ + +.+.+...+..++..+...+..+.....+.+|+.++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 328 (588)
T PRK11174 249 SSAVLEFFASISIALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFL 328 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333332222211111111244454432 1 1123445667778888888889999999999999999
Q ss_pred cCccchhccccCCCCCCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCc
Q 000463 1244 EIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSG 1323 (1479)
Q Consensus 1244 ~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~ 1323 (1479)
+.|++.+.. ...+ ...+..+.|+|+||+|.|.++ +++|+|+||+|+|||++||||+||||||||+++|.|+| |++
T Consensus 329 ~~~~~~~~~--~~~~-~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 329 ETPLAHPQQ--GEKE-LASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred cCCCcccCC--Cccc-cCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 876543211 1101 111234679999999988655 56999999999999999999999999999999999999 999
Q ss_pred cEEEEcCEecCCCChhhhhcceEEEcCccccccccHhhhcCCC-CCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCC
Q 000463 1324 GRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPI-GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSG 1402 (1479)
Q Consensus 1324 G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1402 (1479)
|+|++||+|+++++.+++|++|++|||||+||+|||||||... ++++|||+++|++.|+++++|+++|+||||.|||+|
T Consensus 404 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 404 GSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred cEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCC
Confidence 9999999999999999999999999999999999999999876 469999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1403 DNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1403 ~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
.||||||||||+||||++++|+|||||||||+||.+|++.|++.|++..+++|+|+||||++++.+||+|+||++|+
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~ 560 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQ 560 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCe
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999995
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-73 Score=739.52 Aligned_cols=535 Identities=21% Similarity=0.277 Sum_probs=434.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCC-CCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 937 VYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDH-SMSFN-PSLFIGVYGSTAVLSMVILVVRAYFVTHV 1014 (1479)
Q Consensus 937 ~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~-~~~~~-~~~~~~vy~~l~~~~~~~~~~~~~~~~~~ 1014 (1479)
.+++|++.. +..+...+++.++..++.+..+++.....|.-. ....+ ....+..++++.++..++.+++.++....
T Consensus 151 ~l~~~~~~~--~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 228 (711)
T TIGR00958 151 RLLGLSGRD--WPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYT 228 (711)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555433 223344455556667777777777765554311 11111 11234455566667778888899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000463 1015 GLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVI 1094 (1479)
Q Consensus 1015 ~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i 1094 (1479)
+.+...+++.++++++++.|++||+++++|+++||+++|++.++..+...+..++..++.+++.+++++..+|++.++++
T Consensus 229 ~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l 308 (711)
T TIGR00958 229 MARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTL 308 (711)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHH
Q 000463 1095 PLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLG 1174 (1479)
Q Consensus 1095 p~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~ 1174 (1479)
..+++..++...+.+..++..+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+.............
T Consensus 309 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (711)
T TIGR00958 309 INLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYL 388 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555566677788999999999999999999999988888888776655443322222221
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccc
Q 000463 1175 FRLELLGSFTFCL-ATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKM 1253 (1479)
Q Consensus 1175 ~~l~~l~~~~~~~-~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~ 1253 (1479)
....++..+...+ ..+.......+.++.|.+...+.|...+..++..+...+.++++...+.+|+.++.+.+++.+..
T Consensus 389 ~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~- 467 (711)
T TIGR00958 389 WTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT- 467 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-
Confidence 1122222221111 11222334568899999999999999999999999999999999999999999999876653211
Q ss_pred cCCCCCCCCCCCccEEEEeeeeeecCC-CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEe
Q 000463 1254 EDRLPPPNWPAHGNVDLIDLQVRYRSN-TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGID 1332 (1479)
Q Consensus 1254 ~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~d 1332 (1479)
. ....++..|.|+|+||+|+|+.+ .+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|
T Consensus 468 -~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~ 544 (711)
T TIGR00958 468 -G--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVP 544 (711)
T ss_pred -C--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 1 11123456889999999999753 3579999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhhcceEEEcCccccccccHhhhcCCC-CCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHH
Q 000463 1333 ISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPI-GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1333 I~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
+++++.+++|++|++|||||.+|+|||||||... ++.+||++++|+++++++++++++|+||||.+||+|.+|||||||
T Consensus 545 i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQ 624 (711)
T TIGR00958 545 LVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQ 624 (711)
T ss_pred HHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHH
Confidence 9999999999999999999999999999999865 468899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
||+||||++++|+|||||||||+||++||+.|++ ....+++|+|+||||++++.+||+|+||++|+
T Consensus 625 RlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ 690 (711)
T TIGR00958 625 RIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGS 690 (711)
T ss_pred HHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999 34458999999999999999999999999995
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-73 Score=734.07 Aligned_cols=521 Identities=21% Similarity=0.256 Sum_probs=430.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccCC-CCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 951 VVAVLLLSVAWQGSLMAGDYWLSYETSEDH-SMSFN-PSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILR 1028 (1479)
Q Consensus 951 ~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~-~~~~~-~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~ 1028 (1479)
+..++++.++..++.++.++.+....|... ....+ ...+..+++++.++..++.+++.++....+.+...+++.++++
T Consensus 138 ~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (686)
T TIGR03797 138 LLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWD 217 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666777777776665554311 11111 1223445556667778888999999999999999999999999
Q ss_pred HHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000463 1029 SILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYL 1108 (1479)
Q Consensus 1029 ~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~y~ 1108 (1479)
++++.|++||++.++|++++|++ |++.++..+...+...+...+.+++.+++++.++|++.++++..+++++.+.....
T Consensus 218 ~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~ 296 (686)
T TIGR03797 218 RLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLG 296 (686)
T ss_pred HHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997 78888888777666666666666777788888898877665554444444443444
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 000463 1109 STSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLA 1188 (1479)
Q Consensus 1109 ~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~ 1188 (1479)
+..+...+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..+.......|......++..+...++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i 376 (686)
T TIGR03797 297 LLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAAL 376 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43344444444556678899999999999999999999999998888888887777776666676666655554433333
Q ss_pred HHH-HHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCcc
Q 000463 1189 TLF-MILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGN 1267 (1479)
Q Consensus 1189 ~~~-~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~ 1267 (1479)
.++ ......+.++.|.+-....+...+..++..+...+..++....+.+|+.++.+.|+|.+. .... ..+..|.
T Consensus 377 l~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~--~~~~~~~ 451 (686)
T TIGR03797 377 FAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE---AKTD--PGKLSGA 451 (686)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcCC--CCCCCce
Confidence 332 333456788888888888888889999999999999999999999999999987766431 1111 1234578
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++
T Consensus 452 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 531 (686)
T TIGR03797 452 IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGV 531 (686)
T ss_pred EEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEE
Confidence 99999999998666779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCccccccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEE
Q 000463 1348 IPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLF 1427 (1479)
Q Consensus 1348 IpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILi 1427 (1479)
|||||.+|+|||||||...+.++|+|+++|++.++++++++++|+||||++||+|.||||||||||+||||++++|+|||
T Consensus 532 v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLi 611 (686)
T TIGR03797 532 VLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILL 611 (686)
T ss_pred EccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999998776689999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1428 MDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1428 LDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
||||||+||++||+.|++.|++. ++|+|+||||++++.+||||+|||+|+
T Consensus 612 LDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~ 661 (686)
T TIGR03797 612 FDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGR 661 (686)
T ss_pred EeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCE
Confidence 99999999999999999999986 699999999999999999999999995
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-72 Score=736.13 Aligned_cols=540 Identities=22% Similarity=0.289 Sum_probs=442.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCC-CCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 935 LHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDH-SMSFN-PSLFIGVYGSTAVLSMVILVVRAYFVT 1012 (1479)
Q Consensus 935 ~~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~-~~~~~-~~~~~~vy~~l~~~~~~~~~~~~~~~~ 1012 (1479)
++.++.+++..++ ....++++.++.+++.++.++.+....|... ....+ ...+...++++.++..++.+++.++..
T Consensus 142 ~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (710)
T TIGR03796 142 LRALWRRLRGSRG--ALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLR 219 (710)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566654332 2233444555666666777777765554311 11111 122344455566677888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000463 1013 HVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFL 1092 (1479)
Q Consensus 1013 ~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 1092 (1479)
..+.+....++.++++++++.|++||++.++|++++|++.| ..+...+...+...+..++.+++.+++++.++|++.++
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 298 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLI 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988 56777777777777777888888888889999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHH
Q 000463 1093 VIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEW 1172 (1479)
Q Consensus 1093 ~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~w 1172 (1479)
++..++++.++..++.+..++..+......+...+++.|+++|+.+||+++.|+.+.+++.+..+...+..........|
T Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (710)
T TIGR03796 299 GIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQI 378 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555555555555555555556666778899999999999999999999999998888777777666655555555
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhc
Q 000463 1173 LGFRLELLGSFTFCLATLF-MILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAW 1251 (1479)
Q Consensus 1173 l~~~l~~l~~~~~~~~~~~-~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~ 1251 (1479)
......++..+...++.++ ......+.++.|.+.....+...+..++..+...+..+.....+.+|+.++.+.|+|.+.
T Consensus 379 ~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 458 (710)
T TIGR03796 379 LGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLL 458 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 5555555544433333222 334456889999988888899999999999999999999999999999999988776432
Q ss_pred cccC--C-CCCCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEE
Q 000463 1252 KMED--R-LPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIII 1328 (1479)
Q Consensus 1252 ~~~~--~-~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~I 1328 (1479)
.... . ...+.++..|.|+++||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|++
T Consensus 459 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 538 (710)
T TIGR03796 459 EEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538 (710)
T ss_pred ccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 1100 0 011113456899999999999876677999999999999999999999999999999999999999999999
Q ss_pred cCEecCCCChhhhhcceEEEcCccccccccHhhhcCCCC-CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCc
Q 000463 1329 DGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIG-QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSV 1407 (1479)
Q Consensus 1329 DG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSg 1407 (1479)
||+|+++++.+++|++|++|||||.+|+|||||||..++ +++|+++++|++.+++++++.++|+||||.++|+|.||||
T Consensus 539 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSG 618 (710)
T TIGR03796 539 DGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSG 618 (710)
T ss_pred CCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCH
Confidence 999999999999999999999999999999999998764 6899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1408 GQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1408 GQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
||||||+||||++++|+|||||||||+||++||+.|.+.|++ .++|+|+||||++++.+||||+|||+|+
T Consensus 619 GQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~ 688 (710)
T TIGR03796 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGK 688 (710)
T ss_pred HHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999987 5899999999999999999999999996
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-72 Score=734.57 Aligned_cols=536 Identities=20% Similarity=0.241 Sum_probs=432.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCc---chhHHHHHHHHHHHHHHHHHHHHHH
Q 000463 935 LHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNP---SLFIGVYGSTAVLSMVILVVRAYFV 1011 (1479)
Q Consensus 935 ~~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~---~~~~~vy~~l~~~~~~~~~~~~~~~ 1011 (1479)
+..++.|++..+++ +..++++.++..++.++.++++....|... +.... ..+...++++.++..++.+++.++.
T Consensus 144 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (708)
T TIGR01193 144 LLKFIPLITRQKKL--IVNIVIAAIIVTLISIAGSYYLQKIIDTYI-PHKMMGTLGIISIGLIIAYIIQQILSYIQIFLL 220 (708)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666543332 334455566667777778888877665311 11111 1223344455566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000463 1012 THVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIF 1091 (1479)
Q Consensus 1012 ~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1091 (1479)
...+.+...+++.++++++++.|++||+++++|++++|++ |.+.+...+...+...+...+.+++.++++++++|++.+
T Consensus 221 ~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 299 (708)
T TIGR01193 221 NVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFL 299 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999998 777777666555555555666666677778888888776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhH
Q 000463 1092 LVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNE 1171 (1479)
Q Consensus 1092 ~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 1171 (1479)
+++..++++..+...+.+..++..+......+...+++.|+++|+.+||+|+.|+++.+++.+..+...+..+.......
T Consensus 300 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (708)
T TIGR01193 300 LSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQ 379 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555555555555556666666666778888999999999999999999999988887777766665554443333
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchh
Q 000463 1172 WLGFRLELLGSFTFCL-ATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAA 1250 (1479)
Q Consensus 1172 wl~~~l~~l~~~~~~~-~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~ 1250 (1479)
+......++..+...+ ..+.......+.++.|.+.....+...+..++..+...+..++....+++|+.++.+.|+|.+
T Consensus 380 ~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 459 (708)
T TIGR01193 380 GQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFI 459 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 3332223332222221 222233345788999998888889999999999999999999999999999999998877643
Q ss_pred ccccCCCCCCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcC
Q 000463 1251 WKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDG 1330 (1479)
Q Consensus 1251 ~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG 1330 (1479)
.. ....+.++..|.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||
T Consensus 460 ~~---~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg 535 (708)
T TIGR01193 460 NK---KKRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNG 535 (708)
T ss_pred cc---ccccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECC
Confidence 21 1111234457899999999999744 5699999999999999999999999999999999999999999999999
Q ss_pred EecCCCChhhhhcceEEEcCccccccccHhhhcCCC--CCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCch
Q 000463 1331 IDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPI--GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVG 1408 (1479)
Q Consensus 1331 ~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~--~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1408 (1479)
+|+++++++++|++|++|||||.||+|||||||... ++++|+++++|++.+++++++.++|+||||.++|+|.+||||
T Consensus 536 ~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgG 615 (708)
T TIGR01193 536 FSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGG 615 (708)
T ss_pred EEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHH
Confidence 999999999999999999999999999999999876 468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1409 QRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1409 QrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|||||+||||++++|+|||||||||+||++||+.|++.|++. +++|+|+||||++++..||||+||++|+
T Consensus 616 QrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~ 685 (708)
T TIGR01193 616 QKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGK 685 (708)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCE
Confidence 999999999999999999999999999999999999999974 7899999999999999999999999996
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-72 Score=714.91 Aligned_cols=521 Identities=24% Similarity=0.358 Sum_probs=419.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccccccCCC-CCCCcch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 952 VAVLLLSVAWQGSLMAGDYWLSYETSEDHS-MSFNPSL---FIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQIL 1027 (1479)
Q Consensus 952 ~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~-~~~~~~~---~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll 1027 (1479)
...+++.++...+.+..++++....+.... ....... ++.+++++.++..++.+++.++....+.+...+++.+++
T Consensus 26 ~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 105 (592)
T PRK10790 26 GLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVM 105 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666777777777665543111 1111111 122344444566677778888888999999999999999
Q ss_pred HHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000463 1028 RSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYY 1107 (1479)
Q Consensus 1028 ~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~y 1107 (1479)
++++++|+++|++.+.|++++|+++|++.++..+...+..++..++.+++.++++++.+|++.++++..+++...+...+
T Consensus 106 ~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~ 185 (592)
T PRK10790 106 DAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIY 185 (592)
T ss_pred HHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888888888888888888888888887654432222222222333
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHH-HHHHHHHHHHHHH
Q 000463 1108 LSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWL-GFRLELLGSFTFC 1186 (1479)
Q Consensus 1108 ~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl-~~~l~~l~~~~~~ 1186 (1479)
....+...+......+...+++.|+++|+.+||+|+.++++.+++.+..+...+..........+. .....++..+...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (592)
T PRK10790 186 QRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILC 265 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444556778899999999999999999999998888877666555544333322221 2222233222211
Q ss_pred HHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCc
Q 000463 1187 LATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHG 1266 (1479)
Q Consensus 1187 ~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g 1266 (1479)
+..+.......+.++.|.+...+.|...+..++..+...+..+++...+.+|+.++.+.+++... . ...++..+
T Consensus 266 ~~~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~---~~~~~~~~ 339 (592)
T PRK10790 266 GLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---N---DDRPLQSG 339 (592)
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---C---CccCCCCC
Confidence 11111112346778888888888899999999999999999999999999999999886654221 1 11223457
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|++||.|+++++++++|++|+
T Consensus 340 ~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 340 RIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred eEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 89999999999754 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccccccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEE
Q 000463 1347 IIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLL 1426 (1479)
Q Consensus 1347 iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1426 (1479)
+|||||.+|+||||+||.++++++|+++++|++++|++++++++|+||||.++|+|.+|||||||||+|||||+++|+||
T Consensus 419 ~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~il 498 (592)
T PRK10790 419 MVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQIL 498 (592)
T ss_pred EEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1427 FMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1427 iLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|||||||+||++|++.|++.|++..++||+|+||||++++..||+|++|++|+
T Consensus 499 llDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~ 551 (592)
T PRK10790 499 ILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQ 551 (592)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCE
Confidence 99999999999999999999999988999999999999999999999999996
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-72 Score=727.49 Aligned_cols=538 Identities=20% Similarity=0.280 Sum_probs=434.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCC-CCCCCc-chhHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 935 LHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDH-SMSFNP-SLFIGVYGSTAVLSMVILVVRAYFVT 1012 (1479)
Q Consensus 935 ~~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~-~~~~~~-~~~~~vy~~l~~~~~~~~~~~~~~~~ 1012 (1479)
+..++.+++..++ .+..++++.++.+++..+.++.+....|... ....+. ..+..+++++.++..++.+++.++..
T Consensus 135 ~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 135 KHWFWSTLKESWP--LYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred chHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554332 2334455556666667777777765554311 111111 12233344455667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000463 1013 HVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFL 1092 (1479)
Q Consensus 1013 ~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 1092 (1479)
..+.+....++.++++++++.|++| ++.++|++++|+ +|++.+...+...+...+...+.++..++++++++|++.++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999998 789999999999 79999998887777666666666777777888888887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHH
Q 000463 1093 VIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEW 1172 (1479)
Q Consensus 1093 ~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~w 1172 (1479)
.+..+++++.+..++.+..++..+......+...+++.|+++|+.+||+|+.|+.+.+++.+..++..+..+.......+
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444444444445555555555555667788899999999999999999999999998888877766666555544444
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhc
Q 000463 1173 LGFRLELLGSFTFCLAT-LFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAW 1251 (1479)
Q Consensus 1173 l~~~l~~l~~~~~~~~~-~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~ 1251 (1479)
......++..+...+.. +....+..+.++.|.+-..++|...+..++..+...+..++....+.+|+.++.+.|+|.+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 44444444333222222 22333456789999888888899999999999999999999999999999999988776432
Q ss_pred cccCCCCCCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCE
Q 000463 1252 KMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331 (1479)
Q Consensus 1252 ~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~ 1331 (1479)
. .......+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+
T Consensus 451 ~---~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 527 (694)
T TIGR03375 451 G---TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV 527 (694)
T ss_pred C---CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 1 1111112346789999999999866667999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhhhhcceEEEcCccccccccHhhhcCCCC-CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHH
Q 000463 1332 DISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIG-QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQR 1410 (1479)
Q Consensus 1332 dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1410 (1479)
|+++++++++|++|++|||||++|+|||||||...+ +++|+|+++|++.+++++++.++|+||||.+||+|.|||||||
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQr 607 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQR 607 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHH
Confidence 999999999999999999999999999999998765 5899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1411 QLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1411 Qrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|||+||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++.+||||+||++|+
T Consensus 608 QRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~ 676 (694)
T TIGR03375 608 QAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGR 676 (694)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999989999999999999999999999999995
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-72 Score=707.41 Aligned_cols=508 Identities=19% Similarity=0.241 Sum_probs=406.6
Q ss_pred HHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 953 AVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGV--YGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSI 1030 (1479)
Q Consensus 953 ~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v--y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~i 1030 (1479)
+.+++.++..++.++.++.+++..+...........+..+ ++++.++..++.+++.++....+.+...+++.++++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l 96 (529)
T TIGR02868 17 VAILLGALALGSAVALLGVSAWLISRAAEMPPVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRL 96 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555666666666665554211111111111111 12234556667777888888889999999999999999
Q ss_pred hcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHH
Q 000463 1031 LHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYW-YRGYYLS 1109 (1479)
Q Consensus 1031 l~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~-~~~~y~~ 1109 (1479)
++.|.+||++.++|++++|+++|++.++..+...+..++..++.+++.++++++.+|.+.++++..++++.+ ...++.+
T Consensus 97 l~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~ 176 (529)
T TIGR02868 97 ARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLR 176 (529)
T ss_pred hccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888888888888888888999999887766544433333 3333444
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 000463 1110 TSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLAT 1189 (1479)
Q Consensus 1110 ~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~ 1189 (1479)
..++..+......+.+.+++.|+++|+++||+|+.|+.+.+++.+..+...+..........+......++..+...++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (529)
T TIGR02868 177 AARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGAL 256 (529)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556678899999999999999999999999998888877776666555444444433333333333222222
Q ss_pred HH-HHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCccE
Q 000463 1190 LF-MILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNV 1268 (1479)
Q Consensus 1190 ~~-~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I 1268 (1479)
++ ......+.++.|.+...+.|...+..++..+......+.....+.+|+.++.+.++|.+.. +...+...+|..+.|
T Consensus 257 ~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~~~~~~I 335 (529)
T TIGR02868 257 WAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG-VVPAAGALGLGKPTL 335 (529)
T ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC-CCCCCcccCCCCceE
Confidence 22 2334467788888888888888899999999999999999999999999999877653221 111111123456789
Q ss_pred EEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEE
Q 000463 1269 DLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGII 1348 (1479)
Q Consensus 1269 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iI 1348 (1479)
+|+||+|+|+++. ++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|++++ .+++|++|++|
T Consensus 336 ~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V 413 (529)
T TIGR02868 336 ELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVF 413 (529)
T ss_pred EEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEE
Confidence 9999999997654 599999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cCccccccccHhhhcCCC-CCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEE
Q 000463 1349 PQEPVLFEGTVRSNIDPI-GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLF 1427 (1479)
Q Consensus 1349 pQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILi 1427 (1479)
||||+||+|||||||... ++++|||+++|+++++++++|.++|+||||.|||+|.|||||||||||||||++++|+|||
T Consensus 414 ~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ili 493 (529)
T TIGR02868 414 AQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILL 493 (529)
T ss_pred ccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999875 4689999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccCh
Q 000463 1428 MDEATASVDSQTDAEIQRIIREEFAACTIISIAHRI 1463 (1479)
Q Consensus 1428 LDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl 1463 (1479)
||||||+||++||+.|++.|++..+++|+|+||||+
T Consensus 494 LDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 494 LDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999988999999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-71 Score=704.12 Aligned_cols=482 Identities=22% Similarity=0.316 Sum_probs=417.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHH
Q 000463 993 YGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMY 1072 (1479)
Q Consensus 993 y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~ 1072 (1479)
++++.++..++.+++.++....+.+....++..+++++++.|.++|++.+.|++++|+++|++.+...+...+..++...
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T PRK11176 71 VIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777788888888889999999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHH
Q 000463 1073 ITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQEN 1152 (1479)
Q Consensus 1073 ~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~ 1152 (1479)
+.+++.+++++.++|++.++++..+++..++.....+..++..+......+...+++.|.++|+.+||+|+.++.+.+++
T Consensus 151 ~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~ 230 (582)
T PRK11176 151 ASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRF 230 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHH
Confidence 88888888888899887766555545544444444444455555555667788899999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHH-HHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 1153 VNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLF-MILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVEN 1231 (1479)
Q Consensus 1153 ~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~ 1231 (1479)
.+..+...+..........+.....+++..+...++.++ ......+.++.|.+.+.+++...+..++..+...+..++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~ 310 (582)
T PRK11176 231 DKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777776666666666666666555443333222 3334567899999988999999999999999999999999
Q ss_pred HhhhHHHHHHhhcCccchhccccCCCCCCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHH
Q 000463 1232 RMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTL 1311 (1479)
Q Consensus 1232 ~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTL 1311 (1479)
...+.+|+.++.+.++|.+. +. ....|..+.|+++||+|+|+++.+++|+|+||+|+|||++||||+||||||||
T Consensus 311 ~~~~~~ri~~~~~~~~~~~~---~~--~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTL 385 (582)
T PRK11176 311 GMAACQTLFAILDLEQEKDE---GK--RVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTI 385 (582)
T ss_pred HHHHHHHHHHHhcCCCcCCC---CC--cCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHH
Confidence 99999999999987655321 11 11123456899999999998766679999999999999999999999999999
Q ss_pred HHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCccccccccHhhhcCCC--CCCCHHHHHHHHHHcCchHHHHh
Q 000463 1312 IQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPI--GQYSDEEIWKSLERCQLKDVVAA 1389 (1479)
Q Consensus 1312 l~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~--~~~sd~eI~~aL~~~~L~~~i~~ 1389 (1479)
+++|+|+++|++|+|++||+|+++++.+++|++|+||||||++|+||||+||... ++++|+|++++++++++++++++
T Consensus 386 l~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~ 465 (582)
T PRK11176 386 ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINK 465 (582)
T ss_pred HHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999854 24899999999999999999999
Q ss_pred CcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhc
Q 000463 1390 KPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDC 1469 (1479)
Q Consensus 1390 lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~ 1469 (1479)
+|+||||.+||+|.+|||||||||+|||||+++|+|||||||||+||++|++.|.+.|++..++||+|+||||++++.+|
T Consensus 466 lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~ 545 (582)
T PRK11176 466 MDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKA 545 (582)
T ss_pred cccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CEEEEEeCCC
Q 000463 1470 DRVIVVDAGL 1479 (1479)
Q Consensus 1470 DrIlVL~~G~ 1479 (1479)
|+|++||+|+
T Consensus 546 D~Ii~l~~g~ 555 (582)
T PRK11176 546 DEILVVEDGE 555 (582)
T ss_pred CEEEEEECCE
Confidence 9999999995
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-70 Score=696.73 Aligned_cols=535 Identities=18% Similarity=0.217 Sum_probs=419.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCC-CCCC---Ccch--hHHHHHHHHHHHHHHHHHHHHHH
Q 000463 938 YKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDH-SMSF---NPSL--FIGVYGSTAVLSMVILVVRAYFV 1011 (1479)
Q Consensus 938 y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~-~~~~---~~~~--~~~vy~~l~~~~~~~~~~~~~~~ 1011 (1479)
+++|++..+++ +.+.+++.++..++.+..++.+.+..+... .... .... ....+.++.++..++.++..++.
T Consensus 7 ~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (574)
T PRK11160 7 FLKLYKRHWFM--LSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVS 84 (574)
T ss_pred HHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555443322 223334444555555555555555443210 1000 0011 12234445566777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000463 1012 THVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIF 1091 (1479)
Q Consensus 1012 ~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1091 (1479)
...+.+....++.++++++++.|+.||++.++|++++|+++|++.++..+...+..++...+.+++.++++++.+|++.+
T Consensus 85 ~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 164 (574)
T PRK11160 85 HDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLAL 164 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999888888888888888889999999998876
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHh
Q 000463 1092 LVIPLAWA-NYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSN 1170 (1479)
Q Consensus 1092 ~~ip~~~~-~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~ 1170 (1479)
+++..+++ ...+..++.+..+...+......+.+.+.+.|+++|+.+||+|+.|+++.+++.+..++..+.........
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (574)
T PRK11160 165 TLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLT 244 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55333322 22233444444455555556677888899999999999999999999999988888887777666655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcChhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccch
Q 000463 1171 EWLGFRLELLGSFTFCLATLFMILLPSSIIKPENVGLSLSYG-LSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEA 1249 (1479)
Q Consensus 1171 ~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~g~vgl~l~y~-~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~ 1249 (1479)
.+.....+++..+...+..++......+.++.|..-..+.|. .....++..+......+.....+.+|+.++.+.++|.
T Consensus 245 ~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~ 324 (574)
T PRK11160 245 GLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEV 324 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 555555555544433333222222224556666554444453 3334455666677778888899999999999876653
Q ss_pred hccccCCCCCCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEc
Q 000463 1250 AWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIID 1329 (1479)
Q Consensus 1250 ~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~ID 1329 (1479)
+.. ...+ ..+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|++|
T Consensus 325 ~~~--~~~~--~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~ 400 (574)
T PRK11160 325 TFP--TTST--AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLN 400 (574)
T ss_pred CCC--cccC--CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 211 0111 113457899999999998655569999999999999999999999999999999999999999999999
Q ss_pred CEecCCCChhhhhcceEEEcCccccccccHhhhcCCC-CCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCch
Q 000463 1330 GIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPI-GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVG 1408 (1479)
Q Consensus 1330 G~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1408 (1479)
|+|+++++.+++|++|++|||||.+|+|||||||... ++.+|+++++|++++++++++.+ |+||||.+||+|.+||||
T Consensus 401 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgG 479 (574)
T PRK11160 401 GQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGG 479 (574)
T ss_pred CEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHH
Confidence 9999999999999999999999999999999999765 36899999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1409 QRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1409 QrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
||||++||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||+|++|++|+
T Consensus 480 qrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~ 550 (574)
T PRK11160 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQ 550 (574)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCe
Confidence 99999999999999999999999999999999999999999888999999999999999999999999996
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-70 Score=696.40 Aligned_cols=523 Identities=24% Similarity=0.320 Sum_probs=445.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccccccCCCCCC--CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 952 VAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSF--NPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRS 1029 (1479)
Q Consensus 952 ~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~--~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ 1029 (1479)
++.+++.++..++....++++....+....... ....+...++++.++..++.+++.++....+.+....++..++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 96 (571)
T TIGR02203 17 VLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEK 96 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555666666543332111111 112234456677777888889999999999999999999999999
Q ss_pred HhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 1030 ILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLS 1109 (1479)
Q Consensus 1030 il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~y~~ 1109 (1479)
+++.|.++|++.+.|++++|+++|++.++..+...+..++..++.+++.++++++++|++.++++.++++..++...+.+
T Consensus 97 ~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~ 176 (571)
T TIGR02203 97 LLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSK 176 (571)
T ss_pred HHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888877777777777777777
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 000463 1110 TSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLAT 1189 (1479)
Q Consensus 1110 ~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~ 1189 (1479)
..++..+......++..+++.|+++|+.+||+++.++++.+++.+..+...+..........+.....+++..+...+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (571)
T TIGR02203 177 RLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVL 256 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777888999999999999999999999999999998888887777766666666666655555544333322
Q ss_pred HH-HHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCccE
Q 000463 1190 LF-MILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNV 1268 (1479)
Q Consensus 1190 ~~-~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I 1268 (1479)
++ ......+.+++|.+....+|...+..++..+......+.....+.+|+.++.+.+++.+.. ..+.+ +..+.|
T Consensus 257 ~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~--~~~~~i 331 (571)
T TIGR02203 257 FIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---TRAIE--RARGDV 331 (571)
T ss_pred HHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCCC--CCCCeE
Confidence 22 3344568899999999999999999999999999999999999999999999876653211 11111 245789
Q ss_pred EEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEE
Q 000463 1269 DLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGII 1348 (1479)
Q Consensus 1269 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iI 1348 (1479)
+++||+|+|++..+++|+|+||+|++||+|+|+|+||||||||+++|.|+++|++|+|++||+|+++++.+++|++++|+
T Consensus 332 ~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v 411 (571)
T TIGR02203 332 EFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALV 411 (571)
T ss_pred EEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEE
Confidence 99999999987556799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccccHhhhcCCCC--CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEE
Q 000463 1349 PQEPVLFEGTVRSNIDPIG--QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLL 1426 (1479)
Q Consensus 1349 pQdp~LF~gTIR~NLdp~~--~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1426 (1479)
||||.+|+|||||||..++ +++|++++++++++++++++.++|+||||.++|+|.+||||||||||||||++++|+||
T Consensus 412 ~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~il 491 (571)
T TIGR02203 412 SQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPIL 491 (571)
T ss_pred ccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999998663 68999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1427 FMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1427 iLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
+||||||+||.+|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+
T Consensus 492 lLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~ 544 (571)
T TIGR02203 492 ILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGR 544 (571)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCE
Confidence 99999999999999999999999989999999999999999999999999985
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-70 Score=688.61 Aligned_cols=517 Identities=20% Similarity=0.276 Sum_probs=417.9
Q ss_pred HHHHHHHHHHHhhhhhhhcccccccCC-CC-CCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 954 VLLLSVAWQGSLMAGDYWLSYETSEDH-SM-SFN-PSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSI 1030 (1479)
Q Consensus 954 ~l~~~~~~~~~~~~~~~wl~~~~~~~~-~~-~~~-~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~i 1030 (1479)
.+++.++..++.+..++.+++..+... .. ... ...+.+.++++.++..++.+++.+.....+.+...+++.++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 87 (529)
T TIGR02857 8 LGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAV 87 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666665555444211 11 111 123445566667777888889999999999999999999999999
Q ss_pred hcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 1031 LHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLST 1110 (1479)
Q Consensus 1031 l~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~y~~~ 1110 (1479)
++.|..+|++.++|++++|+++|++.++..+...+..++...+.+++.+++++.++|.+.++++..+++..++...+.+.
T Consensus 88 ~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~ 167 (529)
T TIGR02857 88 AALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWA 167 (529)
T ss_pred HhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888888887788888888888888886655443333333333333333
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHHH-H
Q 000463 1111 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLA-T 1189 (1479)
Q Consensus 1111 ~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~-~ 1189 (1479)
.+...+......+...+++.|+++|+.+||+|+.|+++.+++.+..+...+..........+......++..+...+. .
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (529)
T TIGR02857 168 AQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAV 247 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444556678889999999999999999999999988887777666655555445555555555444433222 2
Q ss_pred HHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCccEE
Q 000463 1190 LFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVD 1269 (1479)
Q Consensus 1190 ~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~ 1269 (1479)
+.......+.++.|.+...+.|+..+..++..+...+..+.....+.+|+.++.+.+++... . .+...+..+.|+
T Consensus 248 ~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~----~-~~~~~~~~~~i~ 322 (529)
T TIGR02857 248 YIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG----K-APVTAAPAPSLE 322 (529)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC----C-cCCCCCCCCeEE
Confidence 22223336778888887888888888888888888999999999999999999975543211 1 111122346899
Q ss_pred EEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEc
Q 000463 1270 LIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIP 1349 (1479)
Q Consensus 1270 ~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIp 1349 (1479)
|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|+++++||
T Consensus 323 ~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~ 402 (529)
T TIGR02857 323 FSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVP 402 (529)
T ss_pred EEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEc
Confidence 99999999866557999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccHhhhcCCC-CCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEE
Q 000463 1350 QEPVLFEGTVRSNIDPI-GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFM 1428 (1479)
Q Consensus 1350 Qdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiL 1428 (1479)
|||.+|+|||||||... ++++|+++++|++.++++++++++|+||||.+||+|.+||||||||++||||++++|+||||
T Consensus 403 Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ilil 482 (529)
T TIGR02857 403 QHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLL 482 (529)
T ss_pred CCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999865 46799999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEE
Q 000463 1429 DEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVV 1475 (1479)
Q Consensus 1429 DEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL 1475 (1479)
|||||+||++|++.|++.|++..+++|+|+||||+++++.||||+||
T Consensus 483 DE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 483 DEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred eCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-70 Score=705.59 Aligned_cols=539 Identities=23% Similarity=0.326 Sum_probs=437.6
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCC-CCCCC-cchhHHHHHHHHHHHHHHHHHHHHHH
Q 000463 934 GLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDH-SMSFN-PSLFIGVYGSTAVLSMVILVVRAYFV 1011 (1479)
Q Consensus 934 ~~~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~-~~~~~-~~~~~~vy~~l~~~~~~~~~~~~~~~ 1011 (1479)
++..++.+++..++. +..++++.++..++.++.++.+....|... ..... ...+...++++.++..++.+++.++.
T Consensus 126 ~~~~~~~~~~~~~~~--~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 203 (694)
T TIGR01846 126 GFSWFIPAIIRYRKQ--FREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLF 203 (694)
T ss_pred cHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555543322 233444555666666677777665554311 11111 12234445566667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000463 1012 THVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIF 1091 (1479)
Q Consensus 1012 ~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1091 (1479)
...+.+....++.++++++++.|++||++.++|++++|+ +|++.+...+...+...+..++.++..++++++++|++.+
T Consensus 204 ~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 282 (694)
T TIGR01846 204 AHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTG 282 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 6999999888777666665666666667788888998876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhH
Q 000463 1092 LVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNE 1171 (1479)
Q Consensus 1092 ~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 1171 (1479)
+++..++++..+..+..+..+...+......+...+++.|+++|+.+||+||.|+.+.+++.+..+...+..+.......
T Consensus 283 i~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (694)
T TIGR01846 283 VVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGN 362 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65544444444333333333444444445567788999999999999999999999999998888887777766666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchh
Q 000463 1172 WLGFRLELLGSFTFCLATLF-MILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAA 1250 (1479)
Q Consensus 1172 wl~~~l~~l~~~~~~~~~~~-~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~ 1250 (1479)
+......++..+...+..++ ......+.++.|.+.....+...+..++..+...+..++....+.+|+.++.+.|+|.+
T Consensus 363 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 442 (694)
T TIGR01846 363 IAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPR 442 (694)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 66655555554443333322 33345678999988888889999999999999999999999999999999998877643
Q ss_pred ccccCCCCCCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcC
Q 000463 1251 WKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDG 1330 (1479)
Q Consensus 1251 ~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG 1330 (1479)
.. ...+. .+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|++||
T Consensus 443 ~~--~~~~~--~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 443 SA--GLAAL--PELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred CC--CCCCC--CCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 11 11111 123578999999999987666799999999999999999999999999999999999999999999999
Q ss_pred EecCCCChhhhhcceEEEcCccccccccHhhhcCCCC-CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchH
Q 000463 1331 IDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIG-QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQ 1409 (1479)
Q Consensus 1331 ~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1409 (1479)
+|+++++.+++|+++++|||||.+|+|||||||...+ +++|+++++|++++++++++.++|+||||.++|+|.+|||||
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 9999999999999999999999999999999998653 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1410 RQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1410 rQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|||++||||++++|+|||||||||+||++|++.+.+.|++..+++|+|+||||++++..||||+||++|+
T Consensus 599 ~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~ 668 (694)
T TIGR01846 599 RQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQ 668 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999888999999999999999999999999996
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-69 Score=685.69 Aligned_cols=544 Identities=19% Similarity=0.241 Sum_probs=429.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 319 RTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGM 398 (1479)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~ 398 (1479)
++...+.+++.++...++.++..++..+.|+++..+++.+..++......+.++.++++..++..++.....+...+.+.
T Consensus 13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (588)
T PRK11174 13 LKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQ 92 (588)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888899999999999999999999999999764221111222334455566666777777777777789999
Q ss_pred HHHHHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000463 399 LIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMML-QLHAVWLMPLQISVALILLYNCLGAS-VITTVV 476 (1479)
Q Consensus 399 riR~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~lal~lL~~~lG~s-~l~gl~ 476 (1479)
++...+...+|+|.++++.....++++|+++|.++.|++++.+++. .+..++...+..++++++++. ++|. +++.++
T Consensus 93 ~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~l~ 171 (588)
T PRK11174 93 HIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFP-INWAAGLILLG 171 (588)
T ss_pred HHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 9999999999999999999988889999999999999999998764 555666555555555444432 2322 222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 000463 477 GIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRI----LSFRESEFGWLTKFMYSIS 552 (1479)
Q Consensus 477 ~~il~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I----~~~R~~El~~l~k~~~~~a 552 (1479)
++++...+...+.++.++.+++.++..++..+.+.|.++|+++||.|+||+.+.++. ++.|+.+.+..+.......
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (588)
T PRK11174 172 TAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSA 251 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344567788888889999999999999999999999999999999887776 5556666555554433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000463 553 GNIIVMWSTPVLISTLTFATALLFGV--------PLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYML 624 (1479)
Q Consensus 553 ~~~~~~~~~p~~v~~~tF~~~~l~~~--------~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~ 624 (1479)
+..++.. .+.++ ++.++.+.+.|. .+++..+|.++.+...+..|+..++..+..+.++++|.+||.++++
T Consensus 252 ~~~~~~~-~~~~~-~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 329 (588)
T PRK11174 252 VLEFFAS-ISIAL-VAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLE 329 (588)
T ss_pred HHHHHHH-HHHHH-HHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3322222 22222 222333333331 2344455666677788889999999999999999999999999998
Q ss_pred cccCcccccccccCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEE
Q 000463 625 SRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704 (1479)
Q Consensus 625 ~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i 704 (1479)
.++.++..............|+++|++|.|++ ++++|+|+||++++||++||+||+|||||||+++|+|++ |++|+|
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I 406 (588)
T PRK11174 330 TPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSL 406 (588)
T ss_pred CCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEE
Confidence 76532211110001012346999999987753 357999999999999999999999999999999999999 999999
Q ss_pred EECC-------------eEEEEeccCcCCCCcHHHHHhcCCC-CChhhHHHHHHHhchHHHHHhcccCCccccccCCCcc
Q 000463 705 KVCG-------------TTAYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINL 770 (1479)
Q Consensus 705 ~~~g-------------~iayv~Q~~~i~~~Tv~enI~fg~~-~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~L 770 (1479)
.++| +++||||+|++|++||+|||.+|.+ .++++++++++.|+++++++.+|+|++|.+||+|.+|
T Consensus 407 ~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~L 486 (588)
T PRK11174 407 KINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGL 486 (588)
T ss_pred EECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCC
Confidence 9998 4899999999999999999999965 7888999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEec
Q 000463 771 SGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSG 850 (1479)
Q Consensus 771 SGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g 850 (1479)
|||||||++||||++++|+|+|||||||+||++++++|.+ .+....+++|+|+|||+++.+..||+|++|++|+|+++|
T Consensus 487 SGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~-~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G 565 (588)
T PRK11174 487 SVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQG 565 (588)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999999999999999986 445556899999999999999999999999999999999
Q ss_pred ChHHHHhcCcchHHHHHHh
Q 000463 851 RYNALLNSGMDFGALVAAH 869 (1479)
Q Consensus 851 ~~~~l~~~~~~f~~l~~~~ 869 (1479)
+++|++++++.|.++...+
T Consensus 566 ~~~eL~~~~~~y~~l~~~q 584 (588)
T PRK11174 566 DYAELSQAGGLFATLLAHR 584 (588)
T ss_pred CHHHHHhcchHHHHHHHHh
Confidence 9999999888888877543
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-71 Score=702.61 Aligned_cols=489 Identities=25% Similarity=0.329 Sum_probs=404.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHH
Q 000463 986 PSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFV 1065 (1479)
Q Consensus 986 ~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~ 1065 (1479)
...+...|..+++...+..++...++.+.|.+...+++++.+++++|++++|||.+..|++..|+++|++.+++.+...+
T Consensus 70 ~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKv 149 (1228)
T KOG0055|consen 70 VSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKV 149 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHH
Confidence 34577778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcH
Q 000463 1066 GITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQ 1145 (1479)
Q Consensus 1066 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~ 1145 (1479)
+.++..+.++++.+++.+++.|.+.+++++..++.......+.+..-.....+....+..-+...|++.+++|+.+|+.|
T Consensus 150 g~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq 229 (1228)
T KOG0055|consen 150 GNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGE 229 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 99999999999999999999999988776665555544444444433444444455556677899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHH---HHHHHH-HHhccCCcChhHHHHHHHHHHHHHHHHHH
Q 000463 1146 TTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFC---LATLFM-ILLPSSIIKPENVGLSLSYGLSLNGVLFW 1221 (1479)
Q Consensus 1146 ~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~---~~~~~~-v~~~~~~~~~g~vgl~l~y~~~l~~~l~~ 1221 (1479)
++..+++.+.++...+...... -|.++...+...++++ ...++. .++..+..++|.+...+.+.+.-...+..
T Consensus 230 ~~e~~ry~~~L~~~~k~gi~~g---~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgq 306 (1228)
T KOG0055|consen 230 KKEIERYSKALENALKFGIKKG---LFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQ 306 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhc
Confidence 9999999998887776654322 2334333333222222 222222 22334455665544443333333344444
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCccEEEEeeeeeecCCC-CcceeeeeEEEeCCcEEEE
Q 000463 1222 AIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNT-PLVLKGITLSIHGGEKIGV 1300 (1479)
Q Consensus 1222 ~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~-~~vL~~is~~I~~GekvgI 1300 (1479)
..-....+.+..+|..+|.+.++..+.......... ..-..+|.|+|+||+|+||... .++|+|+||+|++||.|||
T Consensus 307 a~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~--~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~val 384 (1228)
T KOG0055|consen 307 ASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGR--VLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVAL 384 (1228)
T ss_pred cccchHHHhccccchHHHHHHhcCCCCCCcccccCC--cccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEE
Confidence 445556677788899999998765443221111111 1223579999999999998654 3699999999999999999
Q ss_pred ECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCccccccccHhhhcCCCC-CCCHHHHHHHHH
Q 000463 1301 VGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIG-QYSDEEIWKSLE 1379 (1479)
Q Consensus 1301 VGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~ 1379 (1479)
||+|||||||++++|.|+|+|++|+|+|||.|+++++.++||++||+|.|||+||++||+|||.... +.|++||.+|++
T Consensus 385 VG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k 464 (1228)
T KOG0055|consen 385 VGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAK 464 (1228)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998664 789999999999
Q ss_pred HcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEE
Q 000463 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISI 1459 (1479)
Q Consensus 1380 ~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~I 1459 (1479)
.++.++||..+|+||||.|||+|..||||||||+||||||+|+|+||+||||||+||+++|+.+|++|++..+|+|.|+|
T Consensus 465 ~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivV 544 (1228)
T KOG0055|consen 465 AANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVV 544 (1228)
T ss_pred HccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhhhhhcCEEEEEeCCC
Q 000463 1460 AHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1460 AHRl~ti~~~DrIlVL~~G~ 1479 (1479)
||||+||+++|+|+||++|+
T Consensus 545 aHRLStIrnaD~I~v~~~G~ 564 (1228)
T KOG0055|consen 545 AHRLSTIRNADKIAVMEEGK 564 (1228)
T ss_pred eeehhhhhccCEEEEEECCE
Confidence 99999999999999999996
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-69 Score=638.60 Aligned_cols=486 Identities=22% Similarity=0.304 Sum_probs=404.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHH
Q 000463 987 SLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVG 1066 (1479)
Q Consensus 987 ~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~ 1066 (1479)
..+++..+++.++..++.+.+.......+.++...++.++++++.+.+..+-...|+|++...+...++.++..+..++.
T Consensus 40 ~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLP 119 (559)
T COG4988 40 LPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLP 119 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777788888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhC
Q 000463 1067 ITVAMYITLLGIFIITCQYAWPTIF---LVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFG 1143 (1479)
Q Consensus 1067 ~~~~~~~~~~~~~~v~~~~~~~~~~---~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~ 1143 (1479)
..+.+.+..+.+++.++..+|...+ +..|++++++.+... .++...+..-.+-..+.+||-+.++|+.|+|+|+
T Consensus 120 q~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~---~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~ 196 (559)
T COG4988 120 QMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGL---AAKDASEKQFSALARLSGHFLDRLRGLETLRAFG 196 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhc
Confidence 9999999999999999999998654 446766665554332 2222223333445668899999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHh-cc-CCcChhHHHHHHHHHHHHHHHHHH
Q 000463 1144 KQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILL-PS-SIIKPENVGLSLSYGLSLNGVLFW 1221 (1479)
Q Consensus 1144 ~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~-~~-~~~~~g~vgl~l~y~~~l~~~l~~ 1221 (1479)
..+...++..+...+..+........+.--+..+|++..+.++.+++...+. .. |.++-...-+++-.+.-+..++..
T Consensus 197 ~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~ 276 (559)
T COG4988 197 RTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRD 276 (559)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHH
Confidence 9887766665555555444444444444445677777777766666654322 12 344433333445556667777777
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEE
Q 000463 1222 AIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVV 1301 (1479)
Q Consensus 1222 ~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIV 1301 (1479)
+...+..-.+...+.+.+..+.+.|.+.+... ......|.....++.+|++++|+++. ++++|+||+++|||++|||
T Consensus 277 lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~--~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talv 353 (559)
T COG4988 277 LGSFFHAAAAGEAAADKLFTLLESPVATPGSG--EKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALV 353 (559)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCc--cccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEE
Confidence 77777777777889999999998877644221 11123333345667779999999775 6999999999999999999
Q ss_pred CCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCccccccccHhhhcCCCC-CCCHHHHHHHHHH
Q 000463 1302 GRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIG-QYSDEEIWKSLER 1380 (1479)
Q Consensus 1302 GrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~ 1380 (1479)
|+||||||||+++|.|+.+|++|+|.+||+|.++++.+++|+++++|||+|++|+|||||||...+ +.+||||++|+++
T Consensus 354 G~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~ 433 (559)
T COG4988 354 GASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQ 433 (559)
T ss_pred CCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998765 4899999999999
Q ss_pred cCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEc
Q 000463 1381 CQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIA 1460 (1479)
Q Consensus 1381 ~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IA 1460 (1479)
+++.++++. |+||||.+||+|.+|||||+||++||||++++++++++|||||+||.|||+.|++.|.+.++++|||+||
T Consensus 434 a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~it 512 (559)
T COG4988 434 AGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVIT 512 (559)
T ss_pred hcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEE
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhcCEEEEEeCCC
Q 000463 1461 HRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1461 HRl~ti~~~DrIlVL~~G~ 1479 (1479)
||++.+.++|+|+|||+||
T Consensus 513 Hrl~~~~~~D~I~vld~G~ 531 (559)
T COG4988 513 HRLEDAADADRIVVLDNGR 531 (559)
T ss_pred cChHHHhcCCEEEEecCCc
Confidence 9999999999999999996
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-68 Score=678.57 Aligned_cols=524 Identities=20% Similarity=0.280 Sum_probs=417.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 951 VVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSI 1030 (1479)
Q Consensus 951 ~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~i 1030 (1479)
+.+++++.++..++.+..++++....|... +......++..++++.++..+..++...+......+....+..++++++
T Consensus 21 ~~~~~~~~i~~~~~~~~~~~~~~~iid~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 99 (588)
T PRK13657 21 GILLAVANVLLAAATFAEPILFGRIIDAIS-GKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERI 99 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666777777777776554311 1111112233333333444444444444444555555556667999999
Q ss_pred hcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 1031 LHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLST 1110 (1479)
Q Consensus 1031 l~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~y~~~ 1110 (1479)
++.|+.+|++.+.|++++|+++|++.+.......+..++...+..++.+++++..+|++.++++.+++++..+..++.+.
T Consensus 100 ~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~ 179 (588)
T PRK13657 100 IQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRK 179 (588)
T ss_pred HhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987777777777777777777777788888888776666666666666666666
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHHHH-
Q 000463 1111 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLAT- 1189 (1479)
Q Consensus 1111 ~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~- 1189 (1479)
.++..+......+...+++.|+++|+.+||+|+.++.+.+++.+..+...+..........+.....+++..+...++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (588)
T PRK13657 180 TKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILV 259 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777788899999999999999999999999888887777766665544444444443333333333222222
Q ss_pred HHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCccEE
Q 000463 1190 LFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVD 1269 (1479)
Q Consensus 1190 ~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~ 1269 (1479)
+.......+.++.|.+...+.|...+..++..+......+.....+.+|+.++.+.+++.+.. ....+. -+..+.|+
T Consensus 260 ~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~~~--~~~~~~I~ 336 (588)
T PRK13657 260 LGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP-PGAIDL--GRVKGAVE 336 (588)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-CCCCCc--CCCCCeEE
Confidence 223344568899999888888999999999999998999999999999999988765432211 111011 12346899
Q ss_pred EEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEc
Q 000463 1270 LIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIP 1349 (1479)
Q Consensus 1270 ~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIp 1349 (1479)
++||+|+|+++ +++|+|+||+++|||++||||+||||||||+++|+|+++|++|+|++||.|+++++.+++|++|+|+|
T Consensus 337 ~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 415 (588)
T PRK13657 337 FDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVF 415 (588)
T ss_pred EEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEe
Confidence 99999999744 45999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccHhhhcCCC-CCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEE
Q 000463 1350 QEPVLFEGTVRSNIDPI-GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFM 1428 (1479)
Q Consensus 1350 Qdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiL 1428 (1479)
|||.+|+|||||||... ++.+|++++++++++++++++.++|+|+||.++|+|.+|||||||||+||||++++|+||||
T Consensus 416 Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliL 495 (588)
T PRK13657 416 QDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILIL 495 (588)
T ss_pred cCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999865 36899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1429 DEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1429 DEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|||||+||++|++.|++.|++..+++|+|+||||++++..||||++|++|+
T Consensus 496 DEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~ 546 (588)
T PRK13657 496 DEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGR 546 (588)
T ss_pred eCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCE
Confidence 999999999999999999999888999999999999999999999999985
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-68 Score=621.70 Aligned_cols=477 Identities=20% Similarity=0.319 Sum_probs=395.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHH
Q 000463 997 AVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLL 1076 (1479)
Q Consensus 997 ~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~ 1076 (1479)
++...+..+...+.......+.-..++.++|+++...+..-...-..|+++||+..|++.+|...-..+...+..++..+
T Consensus 68 aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~ 147 (573)
T COG4987 68 AILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIA 147 (573)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHH
Confidence 34444555555566667788899999999999999999999999999999999999999999998888888888777777
Q ss_pred HHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHH
Q 000463 1077 GIFIITCQYAWPTIFLVIP-LAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNR 1155 (1479)
Q Consensus 1077 ~~~~v~~~~~~~~~~~~ip-~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~ 1155 (1479)
++.+...+.+|++.+.+.. ++++.+.+...+.+..|...+.-...++.+.++|.|.+.|....+.||+++.|.+.....
T Consensus 148 ~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~ 227 (573)
T COG4987 148 VVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEAT 227 (573)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHH
Confidence 7777777788876654333 333333344444455566666666778899999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHHH-HHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Q 000463 1156 VNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLA-TLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAI-YMSCFVENRM 1233 (1479)
Q Consensus 1156 ~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~-~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~-~~~~~~e~~~ 1233 (1479)
.+...+..........|-.+.+.++..+.+... ++.......|..+...+.+++--.+.....+.-+. ..+.++....
T Consensus 228 e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~ 307 (573)
T COG4987 228 EASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVI 307 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHH
Confidence 888888888888888898888888877766533 33333334444432222222211122222222233 3456778888
Q ss_pred hhHHHHHHhhcCccchhccccCCCCCCCCCCCc-cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHH
Q 000463 1234 VSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHG-NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLI 1312 (1479)
Q Consensus 1234 ~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g-~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl 1312 (1479)
-|..|+.+..+.++|.... .+ .-|..+ .++++||+|+|+.+.++||+|+||++++||||||+||||||||||+
T Consensus 308 ~Sa~Rl~~i~~q~~e~~~~-~~-----~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTll 381 (573)
T COG4987 308 ASARRLNDILDQKPEVTFP-DE-----QTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLL 381 (573)
T ss_pred HHHHHHhhhccCCcccCCC-cc-----ccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHH
Confidence 8999999988877765432 11 112222 7999999999999888999999999999999999999999999999
Q ss_pred HHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCccccccccHhhhcCCC-CCCCHHHHHHHHHHcCchHHHHhCc
Q 000463 1313 QVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPI-GQYSDEEIWKSLERCQLKDVVAAKP 1391 (1479)
Q Consensus 1313 ~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp 1391 (1479)
++|.|.++|++|+|..+|.+++.++.+++|+.|++++|.+++|+||+|+||... .+.||||+|+||+++||++++++.|
T Consensus 382 qLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p 461 (573)
T COG4987 382 QLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAP 461 (573)
T ss_pred HHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhCh
Confidence 999999999999999999999999999999999999999999999999999754 4699999999999999999999999
Q ss_pred CCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCE
Q 000463 1392 DKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDR 1471 (1479)
Q Consensus 1392 ~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~Dr 1471 (1479)
+||||.+||+|.+||||||||++|||+||++.++++|||||.+||++||++|.+.|.+..+|+|+|+||||+..+..|||
T Consensus 462 ~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~dr 541 (573)
T COG4987 462 DGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDR 541 (573)
T ss_pred hhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC
Q 000463 1472 VIVVDAGL 1479 (1479)
Q Consensus 1472 IlVL~~G~ 1479 (1479)
|+|||+|+
T Consensus 542 Iivl~~Gk 549 (573)
T COG4987 542 IIVLDNGK 549 (573)
T ss_pred EEEEECCe
Confidence 99999996
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-68 Score=677.65 Aligned_cols=539 Identities=22% Similarity=0.300 Sum_probs=432.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCC-CCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 937 VYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDH-SMSFN-PSLFIGVYGSTAVLSMVILVVRAYFVTHV 1014 (1479)
Q Consensus 937 ~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~-~~~~~-~~~~~~vy~~l~~~~~~~~~~~~~~~~~~ 1014 (1479)
.++.|++..++. +.+.+++.++..++.+..++.+....+... ..... ...++.+++++.++..++.+++.++....
T Consensus 8 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (576)
T TIGR02204 8 ALWPFVRPYRGR--VLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWL 85 (576)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555543322 223344445555566666665554443210 11111 12234445555556667778888888899
Q ss_pred HHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000463 1015 GLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVI 1094 (1479)
Q Consensus 1015 ~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i 1094 (1479)
+.+....++..+++++++.|.++|++.+.|++++|+++|++.++..+...+..++...+.+++.+++++.++|++.++++
T Consensus 86 ~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 165 (576)
T TIGR02204 86 GERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVL 165 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888888888888888888888888888766554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHH
Q 000463 1095 PLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLG 1174 (1479)
Q Consensus 1095 p~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~ 1174 (1479)
...++...+...+.+..+...+.....++...+++.|+++|+.+||+|+.++.+.+++.+..+...+..........|+.
T Consensus 166 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (576)
T TIGR02204 166 LAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLT 245 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555555566666777888999999999999999999999988888887776666555444444554
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccc
Q 000463 1175 FRLELLGSFTFCLATL-FMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKM 1253 (1479)
Q Consensus 1175 ~~l~~l~~~~~~~~~~-~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~ 1253 (1479)
.....+..+...+..+ .......+.++.|.+.....|...+..++..+...+..+.....+.+|+.++.+.++|.+...
T Consensus 246 ~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 325 (576)
T TIGR02204 246 AIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA 325 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC
Confidence 4443333322222222 233345678899998888899999999999999999999999999999999988765532111
Q ss_pred cCCCCCCCCCCCccEEEEeeeeeecCCC-CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEe
Q 000463 1254 EDRLPPPNWPAHGNVDLIDLQVRYRSNT-PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGID 1332 (1479)
Q Consensus 1254 ~~~~~~~~wp~~g~I~~~nvs~~Y~~~~-~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~d 1332 (1479)
...+..+|..+.|+++||+|+|+++. +++|+|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|++||+|
T Consensus 326 --~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~ 403 (576)
T TIGR02204 326 --HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD 403 (576)
T ss_pred --CCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 11112234457899999999998643 569999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhhcceEEEcCccccccccHhhhcCCCC-CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHH
Q 000463 1333 ISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIG-QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1333 I~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
+++++.+++|++++|+||||.+|+|||||||...+ +.+|++++++++++++.+++.++|+|+||.++|+|.+|||||||
T Consensus 404 i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 404 LRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 99999999999999999999999999999998654 57899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|++||||++++|+|||||||||++|.+|++.|.+.|++..+++|+|+||||++.+..||||++|++|+
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~ 551 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGR 551 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999989999999999999999999999999995
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-70 Score=618.23 Aligned_cols=506 Identities=19% Similarity=0.291 Sum_probs=396.2
Q ss_pred hhhhhhhcccccccCCCCCCCcchhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccee
Q 000463 965 LMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVL------SMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFF 1038 (1479)
Q Consensus 965 ~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~------~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fF 1038 (1479)
....+...++..+.-..+..........|+.+.++ +.++.-+|+++.......+.+.+--++++|+....+.|.
T Consensus 231 ~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwH 310 (790)
T KOG0056|consen 231 NVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWH 310 (790)
T ss_pred hhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeee
Confidence 33344444444433222322333344455555443 356777888888888999999999999999999999999
Q ss_pred cccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 000463 1039 DTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGI-FIITCQYAWPTIFLVIPLAWANYWYR----GYYLSTSRE 1113 (1479)
Q Consensus 1039 d~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~ip~~~~~~~~~----~~y~~~~r~ 1113 (1479)
-.+.+|+++.-..+..+.+. .+...+..+.-.+.-+... +-....++|++.+++...+.+|..+. ..-.+..|.
T Consensus 311 L~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~ 389 (790)
T KOG0056|consen 311 LNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRK 389 (790)
T ss_pred ecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHH
Confidence 99999999887777666655 3322222222222222222 22233457777766666655554422 111122222
Q ss_pred HHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHH-H
Q 000463 1114 LTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLF-M 1192 (1479)
Q Consensus 1114 l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~ 1192 (1479)
+...+.+++ ..-.+++-+..|+|-|++|+.-.+++.+.++.+++..+.....-..+...-+.+..+...+..++ +
T Consensus 390 Mn~~~nesr----Ar~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~a 465 (790)
T KOG0056|consen 390 MNNSWNESR----ARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCA 465 (790)
T ss_pred hhhhhhhhh----hhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheee
Confidence 333333333 34568899999999999999999999999999999887776655444444333333322222222 2
Q ss_pred HHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCccEEEEe
Q 000463 1193 ILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLID 1272 (1479)
Q Consensus 1193 v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~n 1272 (1479)
+.+..+..+.|..-+..+|.+++.++++|+...+..++++.+-.||+.+.++.++|..+ ....+|---.+|.|+|+|
T Consensus 466 Y~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd---~P~a~pl~~~~G~i~fsn 542 (790)
T KOG0056|consen 466 YRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVD---LPGAPPLKVTQGKIEFSN 542 (790)
T ss_pred eeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhc---CCCCCCccccCCeEEEEE
Confidence 33345677788888999999999999999999999999999999999999987666432 122222233579999999
Q ss_pred eeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCcc
Q 000463 1273 LQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEP 1352 (1479)
Q Consensus 1273 vs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp 1352 (1479)
|+|.|.++.| ||+||||+++||+.||+|||||+||||++++|+|++|.++|.|.|||+||+++..+.||++||+||||.
T Consensus 543 vtF~Y~p~k~-vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDt 621 (790)
T KOG0056|consen 543 VTFAYDPGKP-VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDT 621 (790)
T ss_pred eEEecCCCCc-eeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcc
Confidence 9999998765 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHhhhcCCCC-CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCC
Q 000463 1353 VLFEGTVRSNIDPIG-QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEA 1431 (1479)
Q Consensus 1353 ~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEa 1431 (1479)
+||++||..||.... .++|||+.+|++.+++||.|...|+||+|.|||+|-.||||||||+++||++||+|.|++||||
T Consensus 622 vLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEA 701 (790)
T KOG0056|consen 622 VLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEA 701 (790)
T ss_pred eeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcch
Confidence 999999999998543 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1432 TASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1432 Ts~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
||+||..||+.||+.+.+..+++|.|+||||++||.++|.|+|+++|+
T Consensus 702 TSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~ 749 (790)
T KOG0056|consen 702 TSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGR 749 (790)
T ss_pred hhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCe
Confidence 999999999999999999999999999999999999999999999995
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=662.59 Aligned_cols=534 Identities=18% Similarity=0.252 Sum_probs=419.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 938 YKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLK 1017 (1479)
Q Consensus 938 y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~ 1017 (1479)
+++|++..+ ..+.+.+++.++..++.++.++.++...|.... ..+...++..++++.++..+..++...+....+.+
T Consensus 10 l~~~l~~~k--~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (585)
T TIGR01192 10 ALSYLNVHK--NRVLLIVIANITLAAITIAEPILFGRIIDAISS-KSDVLPTLALWAGFGVFNTIAYVLVAREADRLAHG 86 (585)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554332 223344555566666777777766655542111 11111222222233333344444444444555555
Q ss_pred HHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000463 1018 TAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLA 1097 (1479)
Q Consensus 1018 ~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~ 1097 (1479)
....++.++++++++.|++||+++++|++++|+++|++.+...+...+...+..++.+++.+++++.++|.+.++++.++
T Consensus 87 ~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 166 (585)
T TIGR01192 87 RRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLG 166 (585)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667779999999999999999999999999999999999888877777777777777777888889999887776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHH
Q 000463 1098 WANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRL 1177 (1479)
Q Consensus 1098 ~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l 1177 (1479)
+++.++...+.+..++..+......+...+++.|+++|+.+||+|+.++.+.+++.+..+...+..+.......+.....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (585)
T TIGR01192 167 ILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLN 246 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666777777777788899999999999999999999998888877777665555443333222222222
Q ss_pred HHHHHHHHHHHH-HHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCC
Q 000463 1178 ELLGSFTFCLAT-LFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDR 1256 (1479)
Q Consensus 1178 ~~l~~~~~~~~~-~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~ 1256 (1479)
.++..+...++. +.......+.++.|.+...+.|...+..++..+......+.....+.+|+.++.+.+++... ..
T Consensus 247 ~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~ 323 (585)
T TIGR01192 247 RMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE---PA 323 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---Cc
Confidence 222222222222 22333456788999888888888888889988888889999999999999998876544221 11
Q ss_pred CCCCCC-CCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCC
Q 000463 1257 LPPPNW-PAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISL 1335 (1479)
Q Consensus 1257 ~~~~~w-p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~ 1335 (1479)
.+ ..+ +..+.|+++||+|+|+++ .++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||+|+++
T Consensus 324 ~~-~~~~~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 401 (585)
T TIGR01192 324 DA-PELPNVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINT 401 (585)
T ss_pred cC-CCCCCCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhh
Confidence 11 112 235689999999999754 358999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhcceEEEcCccccccccHhhhcCCC-CCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHH
Q 000463 1336 LGLHDLRSRFGIIPQEPVLFEGTVRSNIDPI-GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLC 1414 (1479)
Q Consensus 1336 i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1414 (1479)
++.+++|++++++||||.+|++|+||||... ++.+|++++++++.+++++++.++|+|+||.++|+|.+||||||||++
T Consensus 402 ~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~ 481 (585)
T TIGR01192 402 VTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLA 481 (585)
T ss_pred CCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHH
Confidence 9999999999999999999999999999865 367999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1415 LGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1415 LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|||||+++|+|||||||||+||.+|++.|++.|++..+++|+|+||||++++..||+|++|++|+
T Consensus 482 lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~ 546 (585)
T TIGR01192 482 IARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGR 546 (585)
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCE
Confidence 99999999999999999999999999999999999888999999999999999999999999995
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-67 Score=665.94 Aligned_cols=486 Identities=20% Similarity=0.252 Sum_probs=398.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHH
Q 000463 989 FIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGIT 1068 (1479)
Q Consensus 989 ~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~ 1068 (1479)
++++++++.++..++.+++.++....+.+...+++.++++++++.|++||++.++|++++|+++|++.++......+..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~ 117 (569)
T PRK10789 38 WIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTL 117 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34445555556666777777778888999999999999999999999999999999999999999999987776666666
Q ss_pred HHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHH
Q 000463 1069 VAMYITLLGIFIIT-CQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTT 1147 (1479)
Q Consensus 1069 ~~~~~~~~~~~~v~-~~~~~~~~~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~ 1147 (1479)
+...+..++.++++ +.++|++.++++..+++..++...+.+..++..+......+.+.+++.|+++|+.+||+|+.+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~ 197 (569)
T PRK10789 118 VDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDR 197 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHH
Confidence 66655555554444 46788776655544444444444454444544555555677889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHH-HHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 1148 FYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCL-ATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMS 1226 (1479)
Q Consensus 1148 f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~-~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~ 1226 (1479)
+.+++.+..+...+..........+..........+...+ ..+.......+.++.|.+.....|...+..++..+....
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~ 277 (569)
T PRK10789 198 QSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMF 277 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888777666655544333333322222222221111 112223345678888988888888888888888888999
Q ss_pred HHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCC
Q 000463 1227 CFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGS 1306 (1479)
Q Consensus 1227 ~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGS 1306 (1479)
..+.....+.+|+.++.+.++|.+. ...+.+ +..|.|+++|++|+|+.+.+++|+|+||+|+|||++||||+|||
T Consensus 278 ~~~~~~~~a~~ri~~ll~~~~~~~~---~~~~~~--~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGs 352 (569)
T PRK10789 278 NIVERGSAAYSRIRAMLAEAPVVKD---GSEPVP--EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGS 352 (569)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccC---CCCCCC--CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCC
Confidence 9999999999999999987654321 111111 23578999999999986556799999999999999999999999
Q ss_pred CHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCccccccccHhhhcCCC-CCCCHHHHHHHHHHcCchH
Q 000463 1307 GKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPI-GQYSDEEIWKSLERCQLKD 1385 (1479)
Q Consensus 1307 GKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~ 1385 (1479)
|||||+++|.|+++|++|+|++||+|+++++.+++|++++++||||.+|+|||||||... .+++|++++++++.+++++
T Consensus 353 GKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~ 432 (569)
T PRK10789 353 GKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHD 432 (569)
T ss_pred CHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999999999999999865 4689999999999999999
Q ss_pred HHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhh
Q 000463 1386 VVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPT 1465 (1479)
Q Consensus 1386 ~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~t 1465 (1479)
++.++|+|+||.++|+|.+||||||||++||||++++|+|||||||||+||+++++.|++.|++..+++|+|+||||+++
T Consensus 433 ~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~ 512 (569)
T PRK10789 433 DILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSA 512 (569)
T ss_pred HHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred hhhcCEEEEEeCCC
Q 000463 1466 VMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1466 i~~~DrIlVL~~G~ 1479 (1479)
+..||+|++|++|+
T Consensus 513 ~~~~d~i~~l~~G~ 526 (569)
T PRK10789 513 LTEASEILVMQHGH 526 (569)
T ss_pred HHcCCEEEEEeCCE
Confidence 99999999999985
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-66 Score=624.28 Aligned_cols=546 Identities=21% Similarity=0.256 Sum_probs=420.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 321 TLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSG-KSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGML 399 (1479)
Q Consensus 321 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~-~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~r 399 (1479)
.+.+..|+.+..+.++.++.......-|.++.++++-+.. .+.. ..-.-....+....++++++..-..+..+..+.|
T Consensus 140 ~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~-~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~r 218 (716)
T KOG0058|consen 140 GLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSA-DALKRACTILLGLFLIGALANAIRGGLLQYAGER 218 (716)
T ss_pred HHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678888888888999988888999999999998866 2221 1111122233333445555555555555556666
Q ss_pred HHHHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000463 400 IRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMM-LQLHAVWLMPLQISVALILLYNCLGAS-VITTVVG 477 (1479)
Q Consensus 400 iR~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~-~~~~~~w~~plqi~lal~lL~~~lG~s-~l~gl~~ 477 (1479)
+-..+...+|++.|+..-+-.+++.+||++|.++.|++-+.+.+ .++.+.-=..+|.+.++.++.. +.|. ++..+++
T Consensus 219 v~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~-~S~~Ltlv~~i~ 297 (716)
T KOG0058|consen 219 VVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFS-LSWRLTLVTLIV 297 (716)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh-hhHHHHHHHHHH
Confidence 66666677888999998888899999999999999999998875 4566655566777777766542 2221 1222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 478 IIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIV 557 (1479)
Q Consensus 478 ~il~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~ 557 (1479)
+.+++.+..+++++.++..++..++..+-.+...|.|++||+|+.|+-|+.-.++-.+.=++-++.-+|-....++....
T Consensus 298 ~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~ 377 (716)
T KOG0058|consen 298 VPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGS 377 (716)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhH
Confidence 22233333444555555555555555556677889999999999999998755554332222222223322222221111
Q ss_pred --HHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccc
Q 000463 558 --MWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVER 635 (1479)
Q Consensus 558 --~~~~p~~v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~ 635 (1479)
+...-..++++.+|.+...++.+|++...+++.+-..+..++..+...++.++++.-+.+|+.+|++.++.-+..-..
T Consensus 378 ~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~ 457 (716)
T KOG0058|consen 378 TNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTL 457 (716)
T ss_pred HHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCcc
Confidence 111223456777888888889999999999999999999999999999999999999999999999876543222111
Q ss_pred ccCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------
Q 000463 636 VEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------- 708 (1479)
Q Consensus 636 ~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------- 708 (1479)
.|. ...+.|+++|++|+|+.+++.++|+|+||+|+|||.||+|||+||||||+.+.|+.+|+|++|+|.+||
T Consensus 458 ~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~ 536 (716)
T KOG0058|consen 458 APD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDIN 536 (716)
T ss_pred ccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcC
Confidence 222 345789999999999999889999999999999999999999999999999999999999999999999
Q ss_pred ------eEEEEeccCcCCCCcHHHHHhcCCCC-ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHH
Q 000463 709 ------TTAYVAQTSWIQNGTIEENILFGLPM-NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLA 781 (1479)
Q Consensus 709 ------~iayv~Q~~~i~~~Tv~enI~fg~~~-~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 781 (1479)
+||+|.|+|-+|++||+|||.+|.+. +.+..+++.+.+...+.+..+|+|.+|.+||+|..||||||||||||
T Consensus 537 ~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIA 616 (716)
T KOG0058|consen 537 HKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIA 616 (716)
T ss_pred HHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHH
Confidence 38999999999999999999999872 34455566677777888999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcC-c
Q 000463 782 RAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSG-M 860 (1479)
Q Consensus 782 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~-~ 860 (1479)
|||++||.|+||||.|||||+++... .++.+....+++|||+|.|+++.+++||+|+|+++|++++.|+++|+++.. +
T Consensus 617 RALlr~P~VLILDEATSALDaeSE~l-Vq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~g 695 (716)
T KOG0058|consen 617 RALLRNPRVLILDEATSALDAESEYL-VQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNG 695 (716)
T ss_pred HHHhcCCCEEEEechhhhcchhhHHH-HHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCccc
Confidence 99999999999999999999998654 467787788899999999999999999999999999999999999999876 6
Q ss_pred chHHHHHHhh
Q 000463 861 DFGALVAAHE 870 (1479)
Q Consensus 861 ~f~~l~~~~~ 870 (1479)
.|.++++.+.
T Consensus 696 ly~~Lv~~q~ 705 (716)
T KOG0058|consen 696 LYAKLVQRQL 705 (716)
T ss_pred HHHHHHHHhc
Confidence 7888886543
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-67 Score=608.81 Aligned_cols=481 Identities=23% Similarity=0.363 Sum_probs=374.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHH
Q 000463 987 SLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVG 1066 (1479)
Q Consensus 987 ~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~ 1066 (1479)
...+..|++..+.+.++..++.+.+.....++-+....+.+++.+.+.+++|.+..+|.+-+++.+-...+...+...+.
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999888877777776666655555
Q ss_pred HHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCc
Q 000463 1067 ITVAMYITLLGIFIIT-CQYAWPTIFLVIPLAWANYWYRGYYLSTSR-ELTRLDSITKAPVIHHFSESISGVMTIRAFGK 1144 (1479)
Q Consensus 1067 ~~~~~~~~~~~~~~v~-~~~~~~~~~~~ip~~~~~~~~~~~y~~~~r-~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~ 1144 (1479)
.++..++.+......+ .-+.+.+.++++.....|..+. .+....| ..++....+.........|++.+-.+||+|+.
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~T-i~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNn 232 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFT-IVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNN 232 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeE-EeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHccc
Confidence 5554444433333222 2233333333322222222111 0111111 11122222333344567899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHh-----ccCCcChhHHHHHHHHHHHHHHHH
Q 000463 1145 QTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILL-----PSSIIKPENVGLSLSYGLSLNGVL 1219 (1479)
Q Consensus 1145 ~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~-----~~~~~~~g~vgl~l~y~~~l~~~l 1219 (1479)
|++-.+++...+.+..+........... +++....++.+...++..+ ..+.++.|..-+..+...++..++
T Consensus 233 E~~Ea~~y~~~l~~~~~~~~~~~~sl~~----lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l 308 (591)
T KOG0057|consen 233 EEYEASRYDGSLKTYERAGLKYSSSLAF----LNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPL 308 (591)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHhHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHH
Confidence 9999999888888777765554433322 3444444443333332222 234556666667777788888888
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEE
Q 000463 1220 FWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIG 1299 (1479)
Q Consensus 1220 ~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Gekvg 1299 (1479)
+.+...+.++...+.-.+-.....+.... +.+. +++--+..|.|+|+||+|.|.++. ++|+|+||+|++|||||
T Consensus 309 ~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~----i~~~-~~~i~~~~~~I~F~dV~f~y~~k~-~iL~gvsf~I~kGekVa 382 (591)
T KOG0057|consen 309 NFLGSVYRELRQALTDMRTLFILLEVDED----IQEA-ALPIELFGGSIEFDDVHFSYGPKR-KVLKGVSFTIPKGEKVA 382 (591)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhhhhh----hhhc-cCCcccCCCcEEEEeeEEEeCCCC-ceecceeEEecCCCEEE
Confidence 88888888887777766554433221111 1111 222223457899999999999764 49999999999999999
Q ss_pred EECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCccccccccHhhhcCCCC-CCCHHHHHHHH
Q 000463 1300 VVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIG-QYSDEEIWKSL 1378 (1479)
Q Consensus 1300 IVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL 1378 (1479)
|||+|||||||++++|+|+++ .+|+|+|||+||++++++.+|+.||+||||..||++||-+||...+ ..+|||+.+++
T Consensus 383 IvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~ 461 (591)
T KOG0057|consen 383 IVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEAC 461 (591)
T ss_pred EECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999997654 68999999999
Q ss_pred HHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEE
Q 000463 1379 ERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIIS 1458 (1479)
Q Consensus 1379 ~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~ 1458 (1479)
+++++||.+.++|+||+|.|||+|..||||||||++||||+||+|+|+++|||||+||.+||+.|.+.|++...++|+|+
T Consensus 462 k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~ 541 (591)
T KOG0057|consen 462 KRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIM 541 (591)
T ss_pred HHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EccChhhhhhcCEEEEEeCCC
Q 000463 1459 IAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1459 IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|+||++++++||+|+|||+|+
T Consensus 542 IvH~l~ll~~~DkI~~l~nG~ 562 (591)
T KOG0057|consen 542 IVHRLDLLKDFDKIIVLDNGT 562 (591)
T ss_pred EEecchhHhcCCEEEEEECCe
Confidence 999999999999999999995
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-65 Score=665.73 Aligned_cols=541 Identities=19% Similarity=0.212 Sum_probs=444.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 320 TTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGML 399 (1479)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~r 399 (1479)
+..++.+++.++...+..++..++..+.|++++.++|.+...... ...+.++++++++.++..++.....+...+++.+
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (710)
T TIGR03796 146 WRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQ-DWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIK 224 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777788888888999999999999999976533321 1233455555566666777777777788899999
Q ss_pred HHHHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 400 IRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMML-QLHAVWLMPLQISVALILLYNCLGASVITTVVGI 478 (1479)
Q Consensus 400 iR~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~lal~lL~~~lG~s~l~gl~~~ 478 (1479)
+...+...+|+|.++++.....++++|+++|.++.| +++.+++. .+..+....+.+++.+++++..-++-+++.++.+
T Consensus 225 ~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 303 (710)
T TIGR03796 225 LAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFA 303 (710)
T ss_pred HHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888889999999999988 67887654 3444444445555555555544444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 479 IGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVM 558 (1479)
Q Consensus 479 il~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~ 558 (1479)
++.+.+..++.+...+..++.++..+++.+.+.|.++|+++||.+++|+.+.++..+.+.++.+...+.....+....+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (710)
T TIGR03796 304 AINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLP 383 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556667778888888899999999999999999999999999999999999999888888776665554444333222
Q ss_pred HHHHH--HHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccc---
Q 000463 559 WSTPV--LISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESV--- 633 (1479)
Q Consensus 559 ~~~p~--~v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~--- 633 (1479)
..... .+.++.++.+....+.+|.+.++++..++..+..|+..++..+..+.+++++++||.++++.++..+...
T Consensus 384 ~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~ 463 (710)
T TIGR03796 384 TLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEA 463 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc
Confidence 22222 2334567777777889999999999999999999999999999999999999999999998754322111
Q ss_pred -c--cccCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--
Q 000463 634 -E--RVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-- 708 (1479)
Q Consensus 634 -~--~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-- 708 (1479)
+ ..+....+..|+++|++|+|++. ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 464 ~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 542 (710)
T TIGR03796 464 PAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIP 542 (710)
T ss_pred cccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEe
Confidence 0 00101123579999999999753 35799999999999999999999999999999999999999999999998
Q ss_pred -----------eEEEEeccCcCCCCcHHHHHhcCCC-CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHH
Q 000463 709 -----------TTAYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQ 776 (1479)
Q Consensus 709 -----------~iayv~Q~~~i~~~Tv~enI~fg~~-~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 776 (1479)
.++||||+|+++++||||||.++.+ .++++..++++.+++.+++..+|.|.+|.+||+|.+|||||||
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQ 622 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQ 622 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHH
Confidence 3899999999999999999998864 6778888999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHH
Q 000463 777 RIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALL 856 (1479)
Q Consensus 777 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~ 856 (1479)
||+||||++++|+|+|||||||+||+++++++++.+.+ .++|+|+|||+++.+..||+|++|++|++++.|+++|++
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll 699 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELW 699 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 99999999999999999999999999999999987654 589999999999999999999999999999999999999
Q ss_pred hcCcchHHHH
Q 000463 857 NSGMDFGALV 866 (1479)
Q Consensus 857 ~~~~~f~~l~ 866 (1479)
+.++.|.+++
T Consensus 700 ~~~~~y~~l~ 709 (710)
T TIGR03796 700 AVGGAYARLI 709 (710)
T ss_pred HcCCcHHHHh
Confidence 8888887764
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-65 Score=659.35 Aligned_cols=542 Identities=22% Similarity=0.238 Sum_probs=440.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 317 PVRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKL 396 (1479)
Q Consensus 317 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 396 (1479)
.+++..++.+++.++...++.++..++..+.|++++.++|.+-.... ...-+.++++++++.++..++.....+...++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (686)
T TIGR03797 125 DLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD-RSLLVQIALALLAAAVGAAAFQLAQSLAVLRL 203 (686)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566778888888889999999999999999999997653221 12223345555556666667666667778889
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 397 GMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQL--HAVWLMPLQISVALILLYNCLGASVITT 474 (1479)
Q Consensus 397 g~riR~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~~~--~~~w~~plqi~lal~lL~~~lG~s~l~g 474 (1479)
+.++...+...+|+|.++++.....++++|+++|.++ |++.+.+++... ..+...++ +++++++++..-++-+++.
T Consensus 204 ~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~ 281 (686)
T TIGR03797 204 ETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF-ALLNLGLMFYYSWKLALVA 281 (686)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888899999999997 899998876432 22333333 3344444444434445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 475 VVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGN 554 (1479)
Q Consensus 475 l~~~il~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~ 554 (1479)
++++++.+.+..++.+..++..++.++..+++.+...|.++|+++||.++.|+.+.++.++.-++..+...+........
T Consensus 282 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (686)
T TIGR03797 282 VALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLL 361 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556667778888899999999999999999999999999999999999988887776555554444443333332
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccc
Q 000463 555 IIVMWSTPVL--ISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNES 632 (1479)
Q Consensus 555 ~~~~~~~p~~--v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 632 (1479)
..+......+ +.++.++.+...++.+|.+.++++..++..+..|+..++..+..+.+++++++|+.++++.++..+..
T Consensus 362 ~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 441 (686)
T TIGR03797 362 TVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 2222222222 23345666666788899999999999999999999999999999999999999999999865432211
Q ss_pred cccccCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC----
Q 000463 633 VERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG---- 708 (1479)
Q Consensus 633 ~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g---- 708 (1479)
. .........|+++|++|+|+++ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 442 ~--~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 518 (686)
T TIGR03797 442 K--TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLA 518 (686)
T ss_pred c--CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcC
Confidence 1 1111123479999999999643 36799999999999999999999999999999999999999999999998
Q ss_pred ---------eEEEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHH
Q 000463 709 ---------TTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQ 779 (1479)
Q Consensus 709 ---------~iayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 779 (1479)
.++||||+|+++++||+|||.+|.+.++++..++++.+++.++++.+|.|.+|.+||+|.+||||||||++
T Consensus 519 ~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRia 598 (686)
T TIGR03797 519 GLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLL 598 (686)
T ss_pred cCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 38999999999999999999999888888889999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcC
Q 000463 780 LARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSG 859 (1479)
Q Consensus 780 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~ 859 (1479)
||||++++|++++||||||+||+++++++++.+.+. ++|+|+|||+++.++.||+|++|++|+|++.|+++|+++++
T Consensus 599 lARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~ 675 (686)
T TIGR03797 599 IARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMARE 675 (686)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999998776442 68999999999999999999999999999999999999888
Q ss_pred cchHHHHH
Q 000463 860 MDFGALVA 867 (1479)
Q Consensus 860 ~~f~~l~~ 867 (1479)
+.|.++..
T Consensus 676 ~~y~~l~~ 683 (686)
T TIGR03797 676 GLFAQLAR 683 (686)
T ss_pred cHHHHHHH
Confidence 88888764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-64 Score=635.82 Aligned_cols=546 Identities=22% Similarity=0.287 Sum_probs=450.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 317 PVRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKL 396 (1479)
Q Consensus 317 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 396 (1479)
+-++..++-||+.+.-..+..++..++.++.|++.+.++|.+--..+ ...=..++.++.+..+++.++...-.+....+
T Consensus 143 ~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~-~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~ 221 (709)
T COG2274 143 SWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS-RSTLTVLAIGLLLAALFEALLRLLRTYLIAHL 221 (709)
T ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555577777777788888999999999999999997754332 22334566677777788888777777778899
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 000463 397 GMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQI---SVALILLYNCLGASVIT 473 (1479)
Q Consensus 397 g~riR~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~~~~~~w~~plqi---~lal~lL~~~lG~s~l~ 473 (1479)
+.|+...+...+|+|.|+|+...++++++||+++.++ |.++|.++...- +...++.+ ++.+.+++..-+.-+++
T Consensus 222 ~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~--~l~~iiD~~~~~i~l~vm~~ys~~L~li 298 (709)
T COG2274 222 GKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGS--ILTLIIDLLFALIFLAVMFLYSWKLTLI 298 (709)
T ss_pred HHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999986 889998887532 12223332 23333444455556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 474 TVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISG 553 (1479)
Q Consensus 474 gl~~~il~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~ 553 (1479)
+++.+++.+.+..++.+..++.-++.++...++-+...|.++||++||..+-|+.|..+.++.=.+.++.-.+.......
T Consensus 299 ~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~ 378 (709)
T COG2274 299 VLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALI 378 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 67777777777788888899999999999999999999999999999999999999988887777666655554444443
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccc
Q 000463 554 NIIVMWSTPVL--ISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNE 631 (1479)
Q Consensus 554 ~~~~~~~~p~~--v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 631 (1479)
..........+ +.+++||++..+++.+|.|..+++-++...+..|+..+.+....+.+++++.+|+.+.++.+..++.
T Consensus 379 ~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~ 458 (709)
T COG2274 379 LNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG 458 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 33332222222 4567899999999999999999999999999999999999999999999999999999997654332
Q ss_pred ccccccCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC---
Q 000463 632 SVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--- 708 (1479)
Q Consensus 632 ~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--- 708 (1479)
..........++.|+++|++|.|+.++ .++|+|+||+|++||.+||+|+||||||||+|.|+|.++|++|+|.++|
T Consensus 459 ~~~~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl 537 (709)
T COG2274 459 DKTLIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDL 537 (709)
T ss_pred ccccccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeH
Confidence 111111222457899999999998653 4799999999999999999999999999999999999999999999999
Q ss_pred ----------eEEEEeccCcCCCCcHHHHHhcCCCCCh-hhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHH
Q 000463 709 ----------TTAYVAQTSWIQNGTIEENILFGLPMNR-AKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQR 777 (1479)
Q Consensus 709 ----------~iayv~Q~~~i~~~Tv~enI~fg~~~~~-~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 777 (1479)
.++||+|++.++++||+|||.+|.|... +...++++..+..+++..+|.|.+|.+||+|.+||||||||
T Consensus 538 ~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQr 617 (709)
T COG2274 538 NDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQR 617 (709)
T ss_pred HhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHH
Confidence 4899999999999999999999988644 33444555557789999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHh
Q 000463 778 IQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 778 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
++||||++++|+|+||||||||||+++.+.|.+.+. ...+|+|+|+|||++..+..||+|+||++|+|+++|+++|+++
T Consensus 618 lalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~-~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 618 LALARALLSKPKILLLDEATSALDPETEAIILQNLL-QILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred HHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHH-HHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHH
Confidence 999999999999999999999999999999987654 4557899999999999999999999999999999999999999
Q ss_pred cCcchHHHHHH
Q 000463 858 SGMDFGALVAA 868 (1479)
Q Consensus 858 ~~~~f~~l~~~ 868 (1479)
.++.|..+.+.
T Consensus 697 ~~g~y~~l~~~ 707 (709)
T COG2274 697 QGGLYARLYQQ 707 (709)
T ss_pred hcChHHHHHhc
Confidence 98888877643
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=656.49 Aligned_cols=538 Identities=19% Similarity=0.228 Sum_probs=416.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 323 LRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRC 402 (1479)
Q Consensus 323 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~riR~ 402 (1479)
++.+|+.+....++.++..++..+.|+++..++|.+..+..... -...+..+++..++..++.....+.....+.++..
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 234 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPA-LASAIFFMCLLSIASSVSAGLRGGSFNYTMARINL 234 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788888999999999999999999998864332111 00111112222222333322222223344555555
Q ss_pred HHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 403 TLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMML-QLHAVWLMPLQISVALILLYNCLGASVITTVVGIIGV 481 (1479)
Q Consensus 403 ~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~lal~lL~~~lG~s~l~gl~~~il~ 481 (1479)
.+...+|+|.++.+....++..+|+++|.++.|++++.+.+. .++.+....+++++++++++..-+.-+++.++.+++.
T Consensus 235 ~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~ 314 (711)
T TIGR00958 235 RIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLV 314 (711)
T ss_pred HHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 566788999999998888889999999999999999987754 5566666666666666655543233333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000463 482 MIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMWS- 560 (1479)
Q Consensus 482 ~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~~~- 560 (1479)
..+...+.++.++..++..+..++......|.++|+++||.|++|+.+.++..+..++-.+..++.....+....+...
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (711)
T TIGR00958 315 FLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVL 394 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777888888888888899999999999999999999999877776655544333222222222211111111
Q ss_pred -HHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccccccCC
Q 000463 561 -TPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGC 639 (1479)
Q Consensus 561 -~p~~v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~ 639 (1479)
.-..+.++.++.+....+.++.+.+++++.++..+..|+..++..+..+.+++++.+||.+|++.++..+......+ .
T Consensus 395 ~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~-~ 473 (711)
T TIGR00958 395 GMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAP-L 473 (711)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCC-C
Confidence 11123344566777778899999999999999999999999999999999999999999999987544322111111 1
Q ss_pred CCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-----------
Q 000463 640 DDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG----------- 708 (1479)
Q Consensus 640 ~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g----------- 708 (1479)
+....|+++|++|+|++.+++++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 474 ~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l 553 (711)
T TIGR00958 474 NLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYL 553 (711)
T ss_pred CCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence 123569999999999865456899999999999999999999999999999999999999999999998
Q ss_pred --eEEEEeccCcCCCCcHHHHHhcCCC-CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHh
Q 000463 709 --TTAYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVY 785 (1479)
Q Consensus 709 --~iayv~Q~~~i~~~Tv~enI~fg~~-~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 785 (1479)
+++||||+|+++++||||||.+|.+ .+++...++++.+++.++++.+|.|.+|.+||+|.+||||||||++||||++
T Consensus 554 r~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl 633 (711)
T TIGR00958 554 HRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633 (711)
T ss_pred HhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence 4899999999999999999999965 4567788899999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcCcchHHH
Q 000463 786 QDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGAL 865 (1479)
Q Consensus 786 ~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~f~~l 865 (1479)
++|+|+|||||||+||+++++.+.+ ....+++|+|+|||+++.+..||+|++|++|+|+++|+++|++++++.|.++
T Consensus 634 ~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 634 RKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred cCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhc
Confidence 9999999999999999999998886 2234789999999999999999999999999999999999999877777654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-67 Score=626.30 Aligned_cols=446 Identities=26% Similarity=0.379 Sum_probs=341.4
Q ss_pred ccEEEEeeEEEecCCCC-cccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccC----CcEEEECC---------
Q 000463 643 IAVEVRDGVFSWDDENG-EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI----SGKVKVCG--------- 708 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~----~G~i~~~g--------- 708 (1479)
..++++|++..|..... .++++||||++.+||.+||+|.+||||||+.++|.|..++. +|+|.++|
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 37899999999976533 25999999999999999999999999999999999999887 89999887
Q ss_pred --------eEEEEeccCc---CCCCcHHHHHhc----CCCCC-hhhHHHHHHHhchHHHHHhcccCCccccccCCCccch
Q 000463 709 --------TTAYVAQTSW---IQNGTIEENILF----GLPMN-RAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSG 772 (1479)
Q Consensus 709 --------~iayv~Q~~~---i~~~Tv~enI~f----g~~~~-~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 772 (1479)
.|||++|+|+ -+-.||.+-|.= ..... ++..++ + .+-++.....+.......+.+|||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~---a---~elL~~Vgl~~~~~~~~yPheLSG 157 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKR---A---VELLEQVGLPDPERRDRYPHQLSG 157 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHH---H---HHHHHHcCCCChhhhccCCcccCc
Confidence 3899999985 233577766642 11111 111111 1 122333222221111568899999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCccccc-CCEEEEEeCCEEEEec
Q 000463 773 GQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHN-VDLILVMREGMIVQSG 850 (1479)
Q Consensus 773 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g 850 (1479)
||||||.||+||..+|+++|+||||+|||+.++.+|.+.+.+... .|.++|+||||++.+.+ ||+|+||++|++++.|
T Consensus 158 G~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G 237 (539)
T COG1123 158 GMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETG 237 (539)
T ss_pred hHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEec
Confidence 999999999999999999999999999999999999987665543 59999999999999876 8999999999999999
Q ss_pred ChHHHHhcCcchHHHHHHhhhhhhhhhccccCCCCCCCCCCCCCccccccccccCCCcccccccccCCCchhhhHHHHhc
Q 000463 851 RYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGNSKLIKEEERET 930 (1479)
Q Consensus 851 ~~~~l~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~ 930 (1479)
+.++++++... +
T Consensus 238 ~~~~i~~~p~h-----------------------------p--------------------------------------- 249 (539)
T COG1123 238 PTEEILSNPQH-----------------------------P--------------------------------------- 249 (539)
T ss_pred CHHHHHhccCC-----------------------------c---------------------------------------
Confidence 99988753110 0
Q ss_pred CcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 000463 931 GKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYF 1010 (1479)
Q Consensus 931 g~v~~~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~ 1010 (1479)
|..-+.++ .+.....
T Consensus 250 -------YT~~Ll~a-----------------------------------~p~~~~~----------------------- 264 (539)
T COG1123 250 -------YTRGLLAA-----------------------------------VPRLGDE----------------------- 264 (539)
T ss_pred -------ccHHHHhh-----------------------------------CCCcccc-----------------------
Confidence 00000000 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000463 1011 VTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTI 1090 (1479)
Q Consensus 1011 ~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 1090 (1479)
T Consensus 265 -------------------------------------------------------------------------------- 264 (539)
T COG1123 265 -------------------------------------------------------------------------------- 264 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHh
Q 000463 1091 FLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSN 1170 (1479)
Q Consensus 1091 ~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~ 1170 (1479)
T Consensus 265 -------------------------------------------------------------------------------- 264 (539)
T COG1123 265 -------------------------------------------------------------------------------- 264 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchh
Q 000463 1171 EWLGFRLELLGSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAA 1250 (1479)
Q Consensus 1171 ~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~ 1250 (1479)
. + ...+.+
T Consensus 265 --------------------------~----------------------------------------~----~~~~~~-- 272 (539)
T COG1123 265 --------------------------K----------------------------------------I----IRLPRR-- 272 (539)
T ss_pred --------------------------c----------------------------------------c----cccccc--
Confidence 0 0 000000
Q ss_pred ccccCCCCCCCCCCCccEEEEeeeeeecC---------CCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC
Q 000463 1251 WKMEDRLPPPNWPAHGNVDLIDLQVRYRS---------NTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP 1321 (1479)
Q Consensus 1251 ~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~---------~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p 1321 (1479)
.+. +...-++++|++.+|.. +...+++||||++++||++||||.||||||||.++|+|+++|
T Consensus 273 ------~~~---~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 273 ------GPL---RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred ------ccc---ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 000 01225788999999974 124689999999999999999999999999999999999999
Q ss_pred CccEEEEcCEe--cCCCChhhhhcceEEEcCccccc---cccHhhhcC-CCC---C----CCHHHHHHHHHHcCchH-HH
Q 000463 1322 SGGRIIIDGID--ISLLGLHDLRSRFGIIPQEPVLF---EGTVRSNID-PIG---Q----YSDEEIWKSLERCQLKD-VV 1387 (1479)
Q Consensus 1322 ~~G~I~IDG~d--I~~i~l~~LR~~i~iIpQdp~LF---~gTIR~NLd-p~~---~----~sd~eI~~aL~~~~L~~-~i 1387 (1479)
++|+|.++|.| .+.-....+|+++-+|+|||+-- ..||+++|. |.. . ...+.+.+.+++++|.. +.
T Consensus 344 ~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l 423 (539)
T COG1123 344 SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFL 423 (539)
T ss_pred CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHH
Confidence 99999999977 33333556788999999999632 459999995 432 1 12345888899999986 45
Q ss_pred HhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhh
Q 000463 1388 AAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPT 1465 (1479)
Q Consensus 1388 ~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~t 1465 (1479)
.+.|. .||||||||+||||||..+|++||+|||||+||+-+.+.|.+.|.+..+ +.|.|+|+|+++.
T Consensus 424 ~ryP~-----------elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~v 492 (539)
T COG1123 424 DRYPH-----------ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAV 492 (539)
T ss_pred hcCch-----------hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH
Confidence 55553 5799999999999999999999999999999999999999999988654 6899999999999
Q ss_pred hhh-cCEEEEEeCCC
Q 000463 1466 VMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1466 i~~-~DrIlVL~~G~ 1479 (1479)
++. ||||+||++|+
T Consensus 493 V~~i~drv~vm~~G~ 507 (539)
T COG1123 493 VRYIADRVAVMYDGR 507 (539)
T ss_pred HHhhCceEEEEECCe
Confidence 998 99999999996
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-65 Score=644.61 Aligned_cols=514 Identities=17% Similarity=0.164 Sum_probs=402.7
Q ss_pred HHHHHHHHHHHhhhhhhhcccccccCC-CCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000463 954 VLLLSVAWQGSLMAGDYWLSYETSEDH-SMSFN-PSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSIL 1031 (1479)
Q Consensus 954 ~l~~~~~~~~~~~~~~~wl~~~~~~~~-~~~~~-~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~il 1031 (1479)
.+++.++..++.+..++.+....|... ..... ...++.+++++.++..++.+++.++....+.+....++.+++++++
T Consensus 11 ~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 90 (544)
T TIGR01842 11 VGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASF 90 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555566666666655444211 11111 1224445555566677888888999999999999999999999999
Q ss_pred cCCcceecccCchhhHHHHhchhhHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 1032 HAPMSFFDTTPSGRILSRASTDQTNIDLFLPF-FVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLST 1110 (1479)
Q Consensus 1032 ~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~y~~~ 1110 (1479)
+.|+. ..|..++++.+|++.+...+.. .+..++...+.++ .+++++..+|++.++++..+++.+.+..+..+.
T Consensus 91 ~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~ 164 (544)
T TIGR01842 91 SATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRA 164 (544)
T ss_pred cCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99984 2367789999999999887665 4444444444443 345677788877655443333333333333333
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHH-HH
Q 000463 1111 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCL-AT 1189 (1479)
Q Consensus 1111 ~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~-~~ 1189 (1479)
.+...+......+...+++.|+++|+++||+|+.++.+.+++.+..++..+.................++..+...+ ..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (544)
T TIGR01842 165 TKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLG 244 (544)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445566777889999999999999999999999888888777766555443333333322233332222222 22
Q ss_pred HHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCccEE
Q 000463 1190 LFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVD 1269 (1479)
Q Consensus 1190 ~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~ 1269 (1479)
+.......+.+++|.+...+.|...+..++..+...+..+.....+.+|+.++.+.++|.+. .. +. -+..+.|+
T Consensus 245 ~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~-~~--~~~~~~i~ 318 (544)
T TIGR01842 245 LGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AM-PL--PEPEGHLS 318 (544)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CC-CC--CCCCCeEE
Confidence 22333457789999988888899999999999999999999999999999999987655321 11 11 12346899
Q ss_pred EEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEc
Q 000463 1270 LIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIP 1349 (1479)
Q Consensus 1270 ~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIp 1349 (1479)
++||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|.+||+|+.+++.+.+|++++++|
T Consensus 319 ~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 398 (544)
T TIGR01842 319 VENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLP 398 (544)
T ss_pred EEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEec
Confidence 99999999865567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccHhhhcCCCC-CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEE
Q 000463 1350 QEPVLFEGTVRSNIDPIG-QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFM 1428 (1479)
Q Consensus 1350 Qdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiL 1428 (1479)
|||.+|++|+||||..++ +++|++++++++.++++++++++|+|+||.++|+|.+||||||||++||||++++|+||||
T Consensus 399 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ilil 478 (544)
T TIGR01842 399 QDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVL 478 (544)
T ss_pred CCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999998654 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1429 DEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1429 DEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|||||+||++|++.|.+.|++.. +++|+|+||||++++..||+|++|++|+
T Consensus 479 DEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~ 530 (544)
T TIGR01842 479 DEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGR 530 (544)
T ss_pred eCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCE
Confidence 99999999999999999999875 6899999999999999999999999995
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-64 Score=653.86 Aligned_cols=535 Identities=23% Similarity=0.286 Sum_probs=437.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 318 VRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLG 397 (1479)
Q Consensus 318 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g 397 (1479)
.++..++.+++.+....++.++..++.++.|++++.++|.+-.... ....+.+++++++..++..++.....+...+++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (694)
T TIGR03375 137 WFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA-FETLWVLAIGVALAIVFDFVLKTLRSYFLDVAG 215 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567788888888888899999999999999999997643321 222333444455555566666666666778899
Q ss_pred HHHHHHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 398 MLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQ--LHAVWLMPLQISVALILLYNCLGASVITTV 475 (1479)
Q Consensus 398 ~riR~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~~--~~~~w~~plqi~lal~lL~~~lG~s~l~gl 475 (1479)
.++...+...+|+|.++++... .+.++|++++.+ .|++.+.+++.. +..+...++ +++.+++++..-++-+++.+
T Consensus 216 ~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l 292 (694)
T TIGR03375 216 KKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPF-ALLFLLVIAIIGGPLVWVPL 292 (694)
T ss_pred HHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999998876 577999999999 799999987643 233333344 33333444443344555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 476 VGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNI 555 (1479)
Q Consensus 476 ~~~il~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~ 555 (1479)
+++++.+.+..++.++.++..++.++..+++.+.+.|.++|+++||.+++|+.+.++..+..++..+...+.....+...
T Consensus 293 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (694)
T TIGR03375 293 VAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLAT 372 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777888889999999999999999999999999999999999999999998888877776666555544433
Q ss_pred HHHHHHHHH--HHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccc
Q 000463 556 IVMWSTPVL--ISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESV 633 (1479)
Q Consensus 556 ~~~~~~p~~--v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 633 (1479)
.+......+ +.++.++.+....+.+|.+.+++++.++..+..|+..++..+..+.+++++++|+.++++.++..+...
T Consensus 373 ~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~ 452 (694)
T TIGR03375 373 NFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGT 452 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 322222222 234567777777889999999999999999999999999999999999999999999998765322111
Q ss_pred ccccCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-----
Q 000463 634 ERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG----- 708 (1479)
Q Consensus 634 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g----- 708 (1479)
...+.......|+++|++|+|+++ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 453 ~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~ 531 (694)
T TIGR03375 453 RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQ 531 (694)
T ss_pred CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 111111123579999999999643 45799999999999999999999999999999999999999999999998
Q ss_pred --------eEEEEeccCcCCCCcHHHHHhcCCC-CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHH
Q 000463 709 --------TTAYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQ 779 (1479)
Q Consensus 709 --------~iayv~Q~~~i~~~Tv~enI~fg~~-~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 779 (1479)
.++||||+|+++++||+|||.++.+ .++++..++++.+++.++++.+|.|.+|.+||+|.+||||||||++
T Consensus 532 ~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRla 611 (694)
T TIGR03375 532 IDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVA 611 (694)
T ss_pred CCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHH
Confidence 4899999999999999999999986 6788888999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhc
Q 000463 780 LARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 780 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
||||++++|+++|||||||+||+++++++.+.+ ....+++|+|+|||+++.+..||+|++|++|++++.|+++|+++.
T Consensus 612 lARall~~p~iliLDE~Ts~LD~~te~~i~~~l-~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 612 LARALLRDPPILLLDEPTSAMDNRSEERFKDRL-KRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999998754 445578999999999999999999999999999999999998753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=663.25 Aligned_cols=468 Identities=24% Similarity=0.336 Sum_probs=343.4
Q ss_pred ccEEEEeeEEEecCCC-CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------
Q 000463 643 IAVEVRDGVFSWDDEN-GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------- 708 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------- 708 (1479)
..++++|++++|.... ..++|+||||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 4799999999996322 34799999999999999999999999999999999999999999998754
Q ss_pred --------------eEEEEeccC--cC-CCCcHHHHHhcCCCCC-hhhHHHHHHHhchHHHHHhcccCC-ccccccCCCc
Q 000463 709 --------------TTAYVAQTS--WI-QNGTIEENILFGLPMN-RAKYGEVVRVCCLEKDLEMMEYGD-QTEIGERGIN 769 (1479)
Q Consensus 709 --------------~iayv~Q~~--~i-~~~Tv~enI~fg~~~~-~~~~~~v~~~~~l~~dl~~l~~gd-~t~ig~~g~~ 769 (1479)
.+|||+|+| -+ +..||+|||.++.... ....++.. ....+-++.+...+ .........+
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~~l~~~gL~~~~~~~~~~~~~ 168 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM--VEAKRMLDQVRIPEAQTILSRYPHQ 168 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH--HHHHHHHHHCCCCChhhHHhCCCcc
Confidence 389999998 34 4579999999863211 00001110 11122344443322 1234677889
Q ss_pred cchHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCccccc-CCEEEEEeCCEEE
Q 000463 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHN-VDLILVMREGMIV 847 (1479)
Q Consensus 770 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~-~D~i~~l~~G~i~ 847 (1479)
|||||||||+|||||+.+|++|||||||++||+.+++.+.+.+.+...+ |+|+|+||||++++.. ||+|++|++|+++
T Consensus 169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~ 248 (623)
T PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248 (623)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence 9999999999999999999999999999999999999998766555444 8999999999999865 8999999999999
Q ss_pred EecChHHHHhcCc-chHHHHHHhhhhhhhhhccccCCCCCCCCCCCCCccccccccccCCCcccccccccCCCchhhhHH
Q 000463 848 QSGRYNALLNSGM-DFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGNSKLIKEE 926 (1479)
Q Consensus 848 ~~g~~~~l~~~~~-~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e 926 (1479)
+.|+++++..... .+..
T Consensus 249 ~~g~~~~~~~~~~~~~~~-------------------------------------------------------------- 266 (623)
T PRK10261 249 ETGSVEQIFHAPQHPYTR-------------------------------------------------------------- 266 (623)
T ss_pred ccCCHHHhhcCCCChhhh--------------------------------------------------------------
Confidence 9898876642100 0000
Q ss_pred HHhcCcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 000463 927 ERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVV 1006 (1479)
Q Consensus 927 ~~~~g~v~~~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~ 1006 (1479)
.++..... +..+.. ..
T Consensus 267 -------------~l~~~~~~------------------------~~~~~~--~~------------------------- 282 (623)
T PRK10261 267 -------------ALLAAVPQ------------------------LGAMKG--LD------------------------- 282 (623)
T ss_pred -------------hhhhccCc------------------------cccccc--cc-------------------------
Confidence 00000000 000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000463 1007 RAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYA 1086 (1479)
Q Consensus 1007 ~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~ 1086 (1479)
.| +
T Consensus 283 --------------------------~~---------~------------------------------------------ 285 (623)
T PRK10261 283 --------------------------YP---------R------------------------------------------ 285 (623)
T ss_pred --------------------------CC---------c------------------------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHH
Q 000463 1087 WPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHN 1166 (1479)
Q Consensus 1087 ~~~~~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~ 1166 (1479)
+.|
T Consensus 286 -----------------------------------~~~------------------------------------------ 288 (623)
T PRK10261 286 -----------------------------------RFP------------------------------------------ 288 (623)
T ss_pred -----------------------------------ccc------------------------------------------
Confidence 000
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCc
Q 000463 1167 NGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIP 1246 (1479)
Q Consensus 1167 ~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~ 1246 (1479)
. .. + ++- .. ..+
T Consensus 289 ------------------------------~--~~---------------------------------~-~~~-~~-~~~ 300 (623)
T PRK10261 289 ------------------------------L--IS---------------------------------L-EHP-AK-QEP 300 (623)
T ss_pred ------------------------------c--cc---------------------------------c-ccc-cc-cCc
Confidence 0 00 0 000 00 000
Q ss_pred cchhccccCCCCCCCCCCCccEEEEeeeeeecCC---------CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhc
Q 000463 1247 SEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSN---------TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFR 1317 (1479)
Q Consensus 1247 ~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~---------~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~r 1317 (1479)
.+.+ .. .+ +...-++++|++++|+.. ...+|+||||+|++||++||+|+||||||||+++|.|
T Consensus 301 ~~~~----~~-~~---~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~G 372 (623)
T PRK10261 301 PIEQ----DT-VV---DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR 372 (623)
T ss_pred cccc----cc-cc---CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 0000 00 00 011259999999999621 1359999999999999999999999999999999999
Q ss_pred cCCCCccEEEEcCEecCCCChh---hhhcceEEEcCcc--cccc-ccHhhhcCC-C---CCCC----HHHHHHHHHHcCc
Q 000463 1318 LVEPSGGRIIIDGIDISLLGLH---DLRSRFGIIPQEP--VLFE-GTVRSNIDP-I---GQYS----DEEIWKSLERCQL 1383 (1479)
Q Consensus 1318 l~~p~~G~I~IDG~dI~~i~l~---~LR~~i~iIpQdp--~LF~-gTIR~NLdp-~---~~~s----d~eI~~aL~~~~L 1383 (1479)
+.+|++|+|.+||.++...+.. .+|++|++|||+| .++. -||++|+.. . +..+ ++++.++|+.+++
T Consensus 373 l~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL 452 (623)
T PRK10261 373 LVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGL 452 (623)
T ss_pred CCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC
Confidence 9999999999999999877643 4677899999998 3665 499999852 1 1111 2467788899888
Q ss_pred h-HHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEc
Q 000463 1384 K-DVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIA 1460 (1479)
Q Consensus 1384 ~-~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IA 1460 (1479)
. +.....| ..||||||||++|||||+.+|+||||||||++||..+.+.|.+.|++..+ +.|||+||
T Consensus 453 ~~~~~~~~~-----------~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~is 521 (623)
T PRK10261 453 LPEHAWRYP-----------HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFIS 521 (623)
T ss_pred CHHHhhCCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 5 4444333 35899999999999999999999999999999999999999999988643 68999999
Q ss_pred cChhhhhh-cCEEEEEeCCC
Q 000463 1461 HRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1461 HRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|+++.+.+ ||||+||++|+
T Consensus 522 Hdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 522 HDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred CCHHHHHHhCCEEEEEECCE
Confidence 99999987 99999999995
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-64 Score=636.63 Aligned_cols=512 Identities=18% Similarity=0.150 Sum_probs=388.3
Q ss_pred HHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000463 955 LLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAP 1034 (1479)
Q Consensus 955 l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p 1034 (1479)
+++.++..+..+..++.++.+.+... ......+..++++.++..++.++..++....+.+....++.++++++++.|
T Consensus 24 ~~~~~~~~~~~~~~~~~i~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~ 100 (555)
T TIGR01194 24 IALGLAGGLAIIALLASINNAIHEEN---FLGQGSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAP 100 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444444455555555555543211 000112233445566667788888888899999999999999999999999
Q ss_pred cceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 1035 MSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSREL 1114 (1479)
Q Consensus 1035 ~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~y~~~~r~l 1114 (1479)
+.||++.++|++++|+++|++.++..+.. +..++...+.+++.++++++.+|.+.++++.++++...+..+..+..++.
T Consensus 101 ~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~ 179 (555)
T TIGR01194 101 IEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKF 179 (555)
T ss_pred HHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988754 66667777777888888889999887765544444333333333333444
Q ss_pred HHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHH--HHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 000463 1115 TRLDSITKAPVIHHFSESISGVMTIRAFGKQT--TFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFM 1192 (1479)
Q Consensus 1115 ~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~--~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~ 1192 (1479)
.+......+.+.+++.|.+.|+.+||+|+.++ ...+++.+..+...+................+++..+...+..++.
T Consensus 180 ~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (555)
T TIGR01194 180 FHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAA 259 (555)
T ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556788999999999999999999854 3344444444444333322221111111111222111111111111
Q ss_pred HHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccc--cC-CCC--CCCCCCCcc
Q 000463 1193 ILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKM--ED-RLP--PPNWPAHGN 1267 (1479)
Q Consensus 1193 v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~--~~-~~~--~~~wp~~g~ 1267 (1479)
...+.++.|.+...+.|...+..++..+......++....+.+|+.++.+.+.+++... ++ ... .+.....+.
T Consensus 260 --~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (555)
T TIGR01194 260 --AMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDS 337 (555)
T ss_pred --HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCce
Confidence 11256788888888888889999999999999999999999999999976432211110 00 000 011123478
Q ss_pred EEEEeeeeeecCC---CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcc
Q 000463 1268 VDLIDLQVRYRSN---TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSR 1344 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~---~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1344 (1479)
|+|+||+|+|++. .+++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++
T Consensus 338 i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~ 417 (555)
T TIGR01194 338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL 417 (555)
T ss_pred EEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhh
Confidence 9999999999753 2369999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCccccccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCC
Q 000463 1345 FGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSR 1424 (1479)
Q Consensus 1345 i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1424 (1479)
+++|||||.+|++|+|+|+. ++.+++++++++++++++++++.+|+||||. .+|||||||||+||||++++|+
T Consensus 418 i~~v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ 490 (555)
T TIGR01194 418 FSAIFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRP 490 (555)
T ss_pred CcEEccChhhhhhhhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999974 3578999999999999999999999999995 6899999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHH-H-cCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1425 LLFMDEATASVDSQTDAEIQRIIRE-E-FAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1425 ILiLDEaTs~lD~~Te~~Iq~~I~~-~-f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|||||||||+||++|++.|++.+.+ . .+++|+|+||||++++..||+|+||++|+
T Consensus 491 ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~ 547 (555)
T TIGR01194 491 ILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGC 547 (555)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCE
Confidence 9999999999999999999887643 2 36899999999999999999999999995
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-63 Score=645.96 Aligned_cols=536 Identities=23% Similarity=0.292 Sum_probs=427.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 322 LLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIR 401 (1479)
Q Consensus 322 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~riR 401 (1479)
.++.+++.++...++.++..++..+.|++++.++|.+-.... ...-+.+++++++..++..++.....+...+++.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (708)
T TIGR01193 150 LITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM-MGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLS 228 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777888889999999999999999997643321 1122333444455555666666666667778899999
Q ss_pred HHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 402 CTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQL--HAVWLMPLQISVALILLYNCLGASVITTVVGII 479 (1479)
Q Consensus 402 ~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~~~--~~~w~~plqi~lal~lL~~~lG~s~l~gl~~~i 479 (1479)
..+...+|+|.++++....++.+.|+++|.++ |++++.++.... ..+...+. +++.+.+++..-++-+++.+++++
T Consensus 229 ~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l~~~~ 306 (708)
T TIGR01193 229 IDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWI-LVIVGLFLVRQNMLLFLLSLLSIP 306 (708)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999888899999999998 999998875432 22222333 333333333322233333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 000463 480 GVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYS----ISGNI 555 (1479)
Q Consensus 480 l~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~----~a~~~ 555 (1479)
+.+.+...+.+..++..++.++..+++.+...|.++|+++||.+++|+.+.++.++..++..+.-.+.... .+...
T Consensus 307 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (708)
T TIGR01193 307 VYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKA 386 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667788888999999999999999999999999999999999998888766655444333332222 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccc
Q 000463 556 IVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVER 635 (1479)
Q Consensus 556 ~~~~~~p~~v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~ 635 (1479)
++.... .+.++.++.+....+.+|.+.++++..++..+..|+..+...+..+.+++++.+||.++++.++..+.....
T Consensus 387 ~~~~~~--~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~ 464 (708)
T TIGR01193 387 VTKLIL--NVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKR 464 (708)
T ss_pred HHHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccc
Confidence 222222 234456788888889999999999999999999999999999999999999999999999865432211111
Q ss_pred ccCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------
Q 000463 636 VEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------- 708 (1479)
Q Consensus 636 ~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------- 708 (1479)
.+.......|+++|++|+|++ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 465 ~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~ 542 (708)
T TIGR01193 465 TELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDID 542 (708)
T ss_pred cCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcC
Confidence 111123457999999999963 35799999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEeccCcCCCCcHHHHHhcCC--CCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHH
Q 000463 709 ------TTAYVAQTSWIQNGTIEENILFGL--PMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQL 780 (1479)
Q Consensus 709 ------~iayv~Q~~~i~~~Tv~enI~fg~--~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 780 (1479)
.++||||+|+++++||+|||.+|. ..++++..++++.+++.++++.+|.|.+|.+||+|.+||||||||++|
T Consensus 543 ~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRial 622 (708)
T TIGR01193 543 RHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIAL 622 (708)
T ss_pred HHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHH
Confidence 389999999999999999999983 356677788899999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcCc
Q 000463 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGM 860 (1479)
Q Consensus 781 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~ 860 (1479)
|||++++|+++|||||||+||+++++++.+.+.+ . +|+|+|+|||+++.+..||+|++|++|++++.|+++|+++.++
T Consensus 623 ARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~-~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~ 700 (708)
T TIGR01193 623 ARALLTDSKVLILDESTSNLDTITEKKIVNNLLN-L-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNG 700 (708)
T ss_pred HHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH-h-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCC
Confidence 9999999999999999999999999999877654 3 6899999999999999999999999999999999999998888
Q ss_pred chHHHH
Q 000463 861 DFGALV 866 (1479)
Q Consensus 861 ~f~~l~ 866 (1479)
.|.+++
T Consensus 701 ~y~~l~ 706 (708)
T TIGR01193 701 FYASLI 706 (708)
T ss_pred cHHHHh
Confidence 887765
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-63 Score=630.89 Aligned_cols=544 Identities=20% Similarity=0.218 Sum_probs=429.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 320 TTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGML 399 (1479)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~r 399 (1479)
...++.+++.++...+..++..++..+.|++++.+++.+.+++... ....++.++++..++..++.....+...+++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 95 (582)
T PRK11176 17 WPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRS-VLKWMPLVVIGLMILRGITSFISSYCISWVSGK 95 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777888888888999999998765433111 112222223334444555555555566778888
Q ss_pred HHHHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 400 IRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMML-QLHAVWLMPLQISVALILLYNCLGASVITTVVGI 478 (1479)
Q Consensus 400 iR~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~lal~lL~~~lG~s~l~gl~~~ 478 (1479)
+...+...+|+|.++++.....+.+.|+++|.++.|++++.+... .+..++..++.+++.+.+++..-++.+++.++++
T Consensus 96 ~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~ 175 (582)
T PRK11176 96 VVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIA 175 (582)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999888889999999999999999988643 4455566666666666665543333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 479 IGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVM 558 (1479)
Q Consensus 479 il~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~ 558 (1479)
++...+.....++.++..++.++..++......|.++|+++||.|++|+.+.++.++.-++-.+...+.....+....+.
T Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (582)
T PRK11176 176 PIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPII 255 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556677788888888899999999999999999999999999988877776554443333333322222221111
Q ss_pred HHHH--HHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccccc
Q 000463 559 WSTP--VLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERV 636 (1479)
Q Consensus 559 ~~~p--~~v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~ 636 (1479)
.... ..+.++.++.+....+.++.+.+..+++++..+..|+..+...+..+.+++.+++|+.++++.++.++....
T Consensus 256 ~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~-- 333 (582)
T PRK11176 256 QLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKR-- 333 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCc--
Confidence 1111 122334566666667789999999999999999999999999999999999999999999986644221111
Q ss_pred cCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-------
Q 000463 637 EGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------- 709 (1479)
Q Consensus 637 ~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------- 709 (1479)
+.......|+++|++|+|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 334 ~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~ 412 (582)
T PRK11176 334 VIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTL 412 (582)
T ss_pred CCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCH
Confidence 111123469999999999643 457999999999999999999999999999999999999999999999983
Q ss_pred ------EEEEeccCcCCCCcHHHHHhcCCC--CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHH
Q 000463 710 ------TAYVAQTSWIQNGTIEENILFGLP--MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLA 781 (1479)
Q Consensus 710 ------iayv~Q~~~i~~~Tv~enI~fg~~--~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 781 (1479)
++|+||+|.++++||+|||.+|.+ .++++.+++++.+++.++++.+|+|.+|.+||+|.+||||||||++||
T Consensus 413 ~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LA 492 (582)
T PRK11176 413 ASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIA 492 (582)
T ss_pred HHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHH
Confidence 799999999999999999999864 677888899999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcCcc
Q 000463 782 RAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMD 861 (1479)
Q Consensus 782 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~ 861 (1479)
||++++|+|+|||||||+||+++++.+++.+.+ ..+++|+|+|||+++.++.||+|++|++|++++.|+++++++.++.
T Consensus 493 Rall~~~~ililDEptsaLD~~t~~~i~~~l~~-~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~ 571 (582)
T PRK11176 493 RALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGV 571 (582)
T ss_pred HHHHhCCCEEEEECccccCCHHHHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCh
Confidence 999999999999999999999999999876544 4568999999999999999999999999999999999999998888
Q ss_pred hHHHHHH
Q 000463 862 FGALVAA 868 (1479)
Q Consensus 862 f~~l~~~ 868 (1479)
|.++...
T Consensus 572 y~~l~~~ 578 (582)
T PRK11176 572 YAQLHKM 578 (582)
T ss_pred HHHHHHH
Confidence 9887653
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-63 Score=629.75 Aligned_cols=543 Identities=21% Similarity=0.243 Sum_probs=439.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 320 TTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGML 399 (1479)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~r 399 (1479)
..+++.+++.++++.++.++..++....|++++.+++..-.... ...-+.+++++++..++..++.....+...+.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 84 (571)
T TIGR02203 6 WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD-RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNK 84 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999999999999999999886543221 11112223334444455555555555667788888
Q ss_pred HHHHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 400 IRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMML-QLHAVWLMPLQISVALILLYNCLGASVITTVVGI 478 (1479)
Q Consensus 400 iR~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~lal~lL~~~lG~s~l~gl~~~ 478 (1479)
+...+...+|+|.++.+.....+.+.|+++|.++.|++++.++.. .+..++...+.+++++.+++..=++-+++.++++
T Consensus 85 ~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~ 164 (571)
T TIGR02203 85 VVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVML 164 (571)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 888899999999999999888889999999999999999998764 4555555555566666655543333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 479 IGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVM 558 (1479)
Q Consensus 479 il~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~ 558 (1479)
++.+.+..+..++.++..++..+..+++.+..+|.++|+++||.++.|+.+.++.++..++..+...+.....+....+.
T Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (571)
T TIGR02203 165 PVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPIT 244 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555667778888899999999999999999999999999999999999888887777665555444433333332222
Q ss_pred HHHHH--HHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccccc
Q 000463 559 WSTPV--LISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERV 636 (1479)
Q Consensus 559 ~~~p~--~v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~ 636 (1479)
..... .+.++.++.+....+.+|++.+++++.++..+..|+..+...+..+.+++++.+|+.++++.++..+....
T Consensus 245 ~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-- 322 (571)
T TIGR02203 245 QLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTR-- 322 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC--
Confidence 22222 22344566676778899999999999999999999999999999999999999999999986554322111
Q ss_pred cCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--------
Q 000463 637 EGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------- 708 (1479)
Q Consensus 637 ~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------- 708 (1479)
+....+..|+++|++|+|++. ++++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 323 ~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~ 401 (571)
T TIGR02203 323 AIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTL 401 (571)
T ss_pred CCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCH
Confidence 111123469999999999754 45799999999999999999999999999999999999999999999998
Q ss_pred -----eEEEEeccCcCCCCcHHHHHhcCCC--CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHH
Q 000463 709 -----TTAYVAQTSWIQNGTIEENILFGLP--MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLA 781 (1479)
Q Consensus 709 -----~iayv~Q~~~i~~~Tv~enI~fg~~--~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 781 (1479)
.++||||+|++|++|++|||.++.+ .++++..++++.|++.+++..+|+|.+|.+|++|.+||||||||++||
T Consensus 402 ~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLA 481 (571)
T TIGR02203 402 ASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIA 481 (571)
T ss_pred HHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHH
Confidence 3799999999999999999999964 778889999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcCcc
Q 000463 782 RAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMD 861 (1479)
Q Consensus 782 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~ 861 (1479)
||++++|+|++||||||+||+++++++++.+. ...+++|+|+|||+.+.++.||+|++|++|++++.|+++++++.++.
T Consensus 482 Rall~~~~illLDEpts~LD~~~~~~i~~~L~-~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~ 560 (571)
T TIGR02203 482 RALLKDAPILILDEATSALDNESERLVQAALE-RLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGL 560 (571)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHH-HHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCH
Confidence 99999999999999999999999999987654 44578999999999999999999999999999999999999987777
Q ss_pred hHHHHH
Q 000463 862 FGALVA 867 (1479)
Q Consensus 862 f~~l~~ 867 (1479)
|.++..
T Consensus 561 ~~~~~~ 566 (571)
T TIGR02203 561 YAQLHN 566 (571)
T ss_pred HHHHHH
Confidence 776544
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-64 Score=686.95 Aligned_cols=487 Identities=17% Similarity=0.226 Sum_probs=395.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHH
Q 000463 988 LFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGI 1067 (1479)
Q Consensus 988 ~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~ 1067 (1479)
.+...+++++++..++.+++.++....+.+...+++.+++++++++|++|||..+.|++.+|++.|++.+...+...+..
T Consensus 98 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~ 177 (1466)
T PTZ00265 98 DIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFIT 177 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHH
Q 000463 1068 TVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTT 1147 (1479)
Q Consensus 1068 ~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~ 1147 (1479)
++..++.+++.++++++.+|.+.++++.++++++.+..++.+..+...+......+...+.+.|+++|+++||+|+.|++
T Consensus 178 ~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~ 257 (1466)
T PTZ00265 178 IFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKT 257 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHH
Confidence 99999999999999999999988776655555555555555555555555556667788999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH-HHhcc--------CCcChhHHHHHHHHHHHHHHH
Q 000463 1148 FYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFM-ILLPS--------SIIKPENVGLSLSYGLSLNGV 1218 (1479)
Q Consensus 1148 f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~-v~~~~--------~~~~~g~vgl~l~y~~~l~~~ 1218 (1479)
+.+++.+..+...+..........+......++..+..+++.++. ..... +.+++|.+...+.+.+.....
T Consensus 258 ~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~ 337 (1466)
T PTZ00265 258 ILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFM 337 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHH
Confidence 999988777766665544433332222222222222222222221 11222 134444443333333333333
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCccEEEEeeeeeecCCC-CcceeeeeEEEeCCcE
Q 000463 1219 LFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNT-PLVLKGITLSIHGGEK 1297 (1479)
Q Consensus 1219 l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~-~~vL~~is~~I~~Gek 1297 (1479)
+..+...+..+.....|.+|+.+.++.+++.+.. .+ ....|..+.|+|+||+|+|+... .++|+|+||+|++||+
T Consensus 338 l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~-~~---~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~ 413 (1466)
T PTZ00265 338 LTIILPNITEYMKSLEATNSLYEIINRKPLVENN-DD---GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKT 413 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CC---CccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCE
Confidence 4445556778889999999999999876653211 11 11123345899999999997532 3699999999999999
Q ss_pred EEEECCCCCCHHHHHHHHhccCCCCccEEEE-cCEecCCCChhhhhcceEEEcCccccccccHhhhcCCCC---------
Q 000463 1298 IGVVGRTGSGKSTLIQVFFRLVEPSGGRIII-DGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIG--------- 1367 (1479)
Q Consensus 1298 vgIVGrTGSGKSTLl~~L~rl~~p~~G~I~I-DG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~--------- 1367 (1479)
+||||+||||||||+++|.|+|+|++|+|++ ||.|+++++++++|++|++|||+|.||++||++||....
T Consensus 414 vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~ 493 (1466)
T PTZ00265 414 YAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEAL 493 (1466)
T ss_pred EEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchh
Confidence 9999999999999999999999999999999 679999999999999999999999999999999996421
Q ss_pred -------------------------------------------------CCCHHHHHHHHHHcCchHHHHhCcCCccccc
Q 000463 1368 -------------------------------------------------QYSDEEIWKSLERCQLKDVVAAKPDKLDSLV 1398 (1479)
Q Consensus 1368 -------------------------------------------------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v 1398 (1479)
+.+|+++++|++++++++++.++|+||||.+
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~v 573 (1466)
T PTZ00265 494 SNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLV 573 (1466)
T ss_pred ccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCcee
Confidence 3578999999999999999999999999999
Q ss_pred cCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhhcCEEEEEe
Q 000463 1399 ADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMDCDRVIVVD 1476 (1479)
Q Consensus 1399 ~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~~DrIlVL~ 1476 (1479)
+++|.+||||||||++|||||+++|+|||||||||+||+++++.|++.|++.. +++|+|+||||++++..||+|+||+
T Consensus 574 g~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~ 653 (1466)
T PTZ00265 574 GSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLS 653 (1466)
T ss_pred CCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999875 4899999999999999999999999
Q ss_pred CC
Q 000463 1477 AG 1478 (1479)
Q Consensus 1477 ~G 1478 (1479)
+|
T Consensus 654 ~g 655 (1466)
T PTZ00265 654 NR 655 (1466)
T ss_pred CC
Confidence 97
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-66 Score=648.35 Aligned_cols=438 Identities=25% Similarity=0.407 Sum_probs=335.1
Q ss_pred cEEEEeeEEEecCC-CCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCccc-----CCcEEEECC---------
Q 000463 644 AVEVRDGVFSWDDE-NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK-----ISGKVKVCG--------- 708 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~i~~~g--------- 708 (1479)
.++++|++++|+.. ..+++|+|+||++++||+++|+||||||||||+++|+|.++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 68999999999632 135799999999999999999999999999999999999986 799998865
Q ss_pred --------eEEEEeccCc--C-CCCcHHHHHhcCCC----CChhhHHHHHHHhchHHHHHhcccCCc-cccccCCCccch
Q 000463 709 --------TTAYVAQTSW--I-QNGTIEENILFGLP----MNRAKYGEVVRVCCLEKDLEMMEYGDQ-TEIGERGINLSG 772 (1479)
Q Consensus 709 --------~iayv~Q~~~--i-~~~Tv~enI~fg~~----~~~~~~~~v~~~~~l~~dl~~l~~gd~-t~ig~~g~~LSG 772 (1479)
.++|++|++. + ...|+++|+.++.. ......+ ....+-++.+...+. .....+..+|||
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~~~~LSg 159 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAAR-----GEILNCLDRVGIRQAAKRLTDYPHQLSG 159 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHCCCCChHHHHhhCCcccCH
Confidence 3799999974 3 34699999875321 1111110 112223343333221 123567889999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCccccc-CCEEEEEeCCEEEEec
Q 000463 773 GQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHN-VDLILVMREGMIVQSG 850 (1479)
Q Consensus 773 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g 850 (1479)
||||||+|||||+.+|+++||||||++||+..++.+.+.+.+...+ |+|+|+|||+++++.. ||+|++|++|++++.|
T Consensus 160 Ge~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g 239 (529)
T PRK15134 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQN 239 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999998766555444 8999999999999865 8999999999999888
Q ss_pred ChHHHHhcCcchHHHHHHhhhhhhhhhccccCCCCCCCCCCCCCccccccccccCCCcccccccccCCCchhhhHHHHhc
Q 000463 851 RYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGNSKLIKEEERET 930 (1479)
Q Consensus 851 ~~~~l~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~ 930 (1479)
+++++..... . .
T Consensus 240 ~~~~~~~~~~-----------------------------------------------------~------~--------- 251 (529)
T PRK15134 240 RAATLFSAPT-----------------------------------------------------H------P--------- 251 (529)
T ss_pred CHHHHhhCCC-----------------------------------------------------C------H---------
Confidence 7655421000 0 0
Q ss_pred CcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 000463 931 GKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYF 1010 (1479)
Q Consensus 931 g~v~~~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~ 1010 (1479)
+....
T Consensus 252 ----------~~~~~----------------------------------------------------------------- 256 (529)
T PRK15134 252 ----------YTQKL----------------------------------------------------------------- 256 (529)
T ss_pred ----------HHHHH-----------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000463 1011 VTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTI 1090 (1479)
Q Consensus 1011 ~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 1090 (1479)
++
T Consensus 257 ----------------~~-------------------------------------------------------------- 258 (529)
T PRK15134 257 ----------------LN-------------------------------------------------------------- 258 (529)
T ss_pred ----------------HH--------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHh
Q 000463 1091 FLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSN 1170 (1479)
Q Consensus 1091 ~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~ 1170 (1479)
..+
T Consensus 259 -------------------------------~~~---------------------------------------------- 261 (529)
T PRK15134 259 -------------------------------SEP---------------------------------------------- 261 (529)
T ss_pred -------------------------------hCc----------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchh
Q 000463 1171 EWLGFRLELLGSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAA 1250 (1479)
Q Consensus 1171 ~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~ 1250 (1479)
+ .++..+
T Consensus 262 -------------------------------------------------------------------~------~~~~~~ 268 (529)
T PRK15134 262 -------------------------------------------------------------------S------GDPVPL 268 (529)
T ss_pred -------------------------------------------------------------------c------cccccc
Confidence 0 000000
Q ss_pred ccccCCCCCCCCCCCccEEEEeeeeeecC---------CCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC
Q 000463 1251 WKMEDRLPPPNWPAHGNVDLIDLQVRYRS---------NTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP 1321 (1479)
Q Consensus 1251 ~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~---------~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p 1321 (1479)
++. ...-++++|++++|+. +...+|+|+||+|++||++||+|+||||||||+++|.|++ |
T Consensus 269 -------~~~---~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~ 337 (529)
T PRK15134 269 -------PEP---ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-N 337 (529)
T ss_pred -------CCC---CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-C
Confidence 000 0114899999999952 1245999999999999999999999999999999999998 4
Q ss_pred CccEEEEcCEecCCCChhh---hhcceEEEcCcc--ccccc-cHhhhcCCC---C--CCC----HHHHHHHHHHcCch-H
Q 000463 1322 SGGRIIIDGIDISLLGLHD---LRSRFGIIPQEP--VLFEG-TVRSNIDPI---G--QYS----DEEIWKSLERCQLK-D 1385 (1479)
Q Consensus 1322 ~~G~I~IDG~dI~~i~l~~---LR~~i~iIpQdp--~LF~g-TIR~NLdp~---~--~~s----d~eI~~aL~~~~L~-~ 1385 (1479)
++|+|.+||.++...+.++ +|++++++||+| .+|.. |+++|+... . ..+ ++++.++++..++. +
T Consensus 338 ~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 417 (529)
T PRK15134 338 SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPE 417 (529)
T ss_pred CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHH
Confidence 8999999999998776544 477899999998 36654 999999531 1 111 34577888888885 3
Q ss_pred HHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccCh
Q 000463 1386 VVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRI 1463 (1479)
Q Consensus 1386 ~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl 1463 (1479)
.....| .+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||++
T Consensus 418 ~~~~~~-----------~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~ 486 (529)
T PRK15134 418 TRHRYP-----------AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL 486 (529)
T ss_pred HHhcCC-----------ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH
Confidence 333322 36899999999999999999999999999999999999999999998643 78999999999
Q ss_pred hhhhh-cCEEEEEeCCC
Q 000463 1464 PTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1464 ~ti~~-~DrIlVL~~G~ 1479 (1479)
+.+.. ||||++|++|+
T Consensus 487 ~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 487 HVVRALCHQVIVLRQGE 503 (529)
T ss_pred HHHHHhcCeEEEEECCE
Confidence 99986 99999999995
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-66 Score=581.58 Aligned_cols=469 Identities=22% Similarity=0.342 Sum_probs=390.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000463 1007 RAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFI-ITCQY 1085 (1479)
Q Consensus 1007 ~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~-v~~~~ 1085 (1479)
|..++...+..+-+.+--+.|.|+.+..+.|.-+..+|-+..-......-|+..+...+...+-..+-+....+ ....+
T Consensus 2 r~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 34456677788888888899999999999999988777665444444444555555555555444444433333 33456
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHH
Q 000463 1086 AWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFH 1165 (1479)
Q Consensus 1086 ~~~~~~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~ 1165 (1479)
+|++..+.+..+++|.++.-.-....-..+|....+.+..++.-.+++-+-.|+|.|+.|+.+..++.+.++.+.++...
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 78887777766666655543333333344555555566667778899999999999999999999999999999998888
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHH-HHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 000463 1166 NNGSNEWLGFRLELLGSFTFCLATLF-MILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTE 1244 (1479)
Q Consensus 1166 ~~~~~~wl~~~l~~l~~~~~~~~~~~-~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~ 1244 (1479)
...+-.||.+.-..+........... ...+..+.++.|..-..-.|..+++.+++.+...+.++.+.....|+..+..+
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 77777788776655544333222221 22334678889999999999999999999999999999999999999999988
Q ss_pred CccchhccccCCCCCCCCC-CCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCc
Q 000463 1245 IPSEAAWKMEDRLPPPNWP-AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSG 1323 (1479)
Q Consensus 1245 ~~~E~~~~~~~~~~~~~wp-~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~ 1323 (1479)
.+.|... ....++-|| ..|.|.|+||+|.|.++.| +|+|+||++++|+++||||++|+||||+.++|+|+|++++
T Consensus 242 ~~~~v~d---~pda~~L~~~~~g~v~F~~V~F~y~~~r~-iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s 317 (497)
T COG5265 242 VEAEVSD---APDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS 317 (497)
T ss_pred cchhhcc---CCCCccccccccceEEEEEEEeeccccch-hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC
Confidence 7766432 233455674 4688999999999998765 9999999999999999999999999999999999999999
Q ss_pred cEEEEcCEecCCCChhhhhcceEEEcCccccccccHhhhcCCCC-CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCC
Q 000463 1324 GRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIG-QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSG 1402 (1479)
Q Consensus 1324 G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1402 (1479)
|.|.|||+||..+..+.||+.||+||||.+||++|+..|+...+ ..+++|++.|++.++++++|+.+|+||||.|||.|
T Consensus 318 G~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerg 397 (497)
T COG5265 318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERG 397 (497)
T ss_pred ceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhe
Confidence 99999999999999999999999999999999999999998654 68999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1403 DNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1403 ~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
-.||||||||+++||++||+|+||+||||||+||..||+.||.+|++..+++|.++|||||+||.++|.|+||++|+
T Consensus 398 lklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~ 474 (497)
T COG5265 398 LKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGR 474 (497)
T ss_pred eeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999995
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-65 Score=643.83 Aligned_cols=436 Identities=21% Similarity=0.344 Sum_probs=333.5
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--------------e
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------------T 709 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------~ 709 (1479)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFG---PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 589999999995 34699999999999999999999999999999999999999999999987 2
Q ss_pred EEEEeccCcCC-CCcHHHHHhcCCCCC----h-h--hHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHH
Q 000463 710 TAYVAQTSWIQ-NGTIEENILFGLPMN----R-A--KYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLA 781 (1479)
Q Consensus 710 iayv~Q~~~i~-~~Tv~enI~fg~~~~----~-~--~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 781 (1479)
++|++|++.++ +.|++||+.++.... . . ...+..+ ...+-++.+... .....+..+|||||||||+||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~gl~--~~~~~~~~~LSgG~~qrv~ia 157 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV--RAAMMLLRVGLK--VDLDEKVANLSISHKQMLEIA 157 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH--HHHHHHHHcCCC--CCcccchhhCCHHHHHHHHHH
Confidence 79999998665 469999998864210 0 0 0111111 112223333322 224567789999999999999
Q ss_pred HHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhcCc
Q 000463 782 RAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNSGM 860 (1479)
Q Consensus 782 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~~~ 860 (1479)
||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++++.. ||++++|++|++++.|+++++...
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-- 235 (510)
T PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSND-- 235 (510)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCHH--
Confidence 99999999999999999999999999987666655568999999999999875 899999999999887765432100
Q ss_pred chHHHHHHhhhhhhhhhccccCCCCCCCCCCCCCccccccccccCCCcccccccccCCCchhhhHHHHhcCcchHHHHHH
Q 000463 861 DFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKI 940 (1479)
Q Consensus 861 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~ 940 (1479)
+..
T Consensus 236 ---~~~-------------------------------------------------------------------------- 238 (510)
T PRK09700 236 ---DIV-------------------------------------------------------------------------- 238 (510)
T ss_pred ---HHH--------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 941 YCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQ 1020 (1479)
Q Consensus 941 y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~ 1020 (1479)
....+. ..
T Consensus 239 --~~~~~~--------------------------~~-------------------------------------------- 246 (510)
T PRK09700 239 --RLMVGR--------------------------EL-------------------------------------------- 246 (510)
T ss_pred --HHhcCC--------------------------Cc--------------------------------------------
Confidence 000000 00
Q ss_pred HHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000463 1021 IFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWAN 1100 (1479)
Q Consensus 1021 ~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~ 1100 (1479)
T Consensus 247 -------------------------------------------------------------------------------- 246 (510)
T PRK09700 247 -------------------------------------------------------------------------------- 246 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHH
Q 000463 1101 YWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELL 1180 (1479)
Q Consensus 1101 ~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l 1180 (1479)
.
T Consensus 247 ---------------------~---------------------------------------------------------- 247 (510)
T PRK09700 247 ---------------------Q---------------------------------------------------------- 247 (510)
T ss_pred ---------------------c----------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCC
Q 000463 1181 GSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPP 1260 (1479)
Q Consensus 1181 ~~~~~~~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~ 1260 (1479)
. + +...++.. .++
T Consensus 248 ---------------~-----------------------------------------~---~~~~~~~~-------~~~- 260 (510)
T PRK09700 248 ---------------N-----------------------------------------R---FNAMKENV-------SNL- 260 (510)
T ss_pred ---------------c-----------------------------------------c---cccccccc-------ccC-
Confidence 0 0 00000000 000
Q ss_pred CCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCCh-h
Q 000463 1261 NWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGL-H 1339 (1479)
Q Consensus 1261 ~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l-~ 1339 (1479)
+....++++|++++|. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +
T Consensus 261 --~~~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 261 --AHETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLD 334 (510)
T ss_pred --CCCcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHH
Confidence 0112599999999763 28999999999999999999999999999999999999999999999999876543 4
Q ss_pred hhhcceEEEcCcc---ccccc-cHhhhcCCCCC------------CC----HHHHHHHHHHcCchHHHHhCcCCcccccc
Q 000463 1340 DLRSRFGIIPQEP---VLFEG-TVRSNIDPIGQ------------YS----DEEIWKSLERCQLKDVVAAKPDKLDSLVA 1399 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp---~LF~g-TIR~NLdp~~~------------~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~ 1399 (1479)
.+|++++|+||++ .+|.+ |+++|+..... .+ .+++.+++++.++.. +..+.++
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~- 407 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC------HSVNQNI- 407 (510)
T ss_pred HHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC------CCccCcc-
Confidence 5678899999984 57765 99999863211 01 134566777776631 1233333
Q ss_pred CCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeC
Q 000463 1400 DSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDA 1477 (1479)
Q Consensus 1400 e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~ 1477 (1479)
..||||||||++|||||+++|+||||||||++||..+.+.+.+.|++.. ++.|||+|||+++.+.. ||||++|++
T Consensus 408 ---~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~ 484 (510)
T PRK09700 408 ---TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCE 484 (510)
T ss_pred ---ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEEC
Confidence 3599999999999999999999999999999999999999999998763 47899999999998876 999999999
Q ss_pred CC
Q 000463 1478 GL 1479 (1479)
Q Consensus 1478 G~ 1479 (1479)
|+
T Consensus 485 G~ 486 (510)
T PRK09700 485 GR 486 (510)
T ss_pred CE
Confidence 85
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-64 Score=685.29 Aligned_cols=239 Identities=21% Similarity=0.343 Sum_probs=194.1
Q ss_pred HHHHHHHhhhHHHHHHhh--cCccchhccccCCCCCCCCCCCc--cEEEEeeeeeec--CCCCcceeeeeEEEeCCcEEE
Q 000463 1226 SCFVENRMVSVERIKQFT--EIPSEAAWKMEDRLPPPNWPAHG--NVDLIDLQVRYR--SNTPLVLKGITLSIHGGEKIG 1299 (1479)
Q Consensus 1226 ~~~~e~~~~sveRi~~~~--~~~~E~~~~~~~~~~~~~wp~~g--~I~~~nvs~~Y~--~~~~~vL~~is~~I~~Gekvg 1299 (1479)
..+.|+.+.++||..+|. +.+.|.+.......++. ..| .++++|++++|+ ++.+.+|+|||++|+|||++|
T Consensus 717 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~a 793 (1394)
T TIGR00956 717 GETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEK---ESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTA 793 (1394)
T ss_pred ccccccccccccccccCCCCccccccccccccccccc---cCCCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEE
Confidence 345677788999998763 34444332221111221 134 479999999985 334579999999999999999
Q ss_pred EECCCCCCHHHHHHHHhccCC---CCccEEEEcCEecCCCChhhhhcceEEEcCccc-cccccHhhhcCCC------CCC
Q 000463 1300 VVGRTGSGKSTLIQVFFRLVE---PSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPV-LFEGTVRSNIDPI------GQY 1369 (1479)
Q Consensus 1300 IVGrTGSGKSTLl~~L~rl~~---p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~-LF~gTIR~NLdp~------~~~ 1369 (1479)
|+||||||||||+++|.|+.+ |++|+|.+||.++. .++|+++++|||++. ++..||||||+.. .+.
T Consensus 794 I~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~ 869 (1394)
T TIGR00956 794 LMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSV 869 (1394)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCC
Confidence 999999999999999999998 78999999999985 357899999999976 4567999999731 123
Q ss_pred CHH----HHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCC-EEEEeCCCCCCCHHhHHHHH
Q 000463 1370 SDE----EIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSR-LLFMDEATASVDSQTDAEIQ 1444 (1479)
Q Consensus 1370 sd~----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~-ILiLDEaTs~lD~~Te~~Iq 1444 (1479)
+++ .+.++++..++.+ -.|+.+++.|.+||||||||++|||||+++|+ ||+||||||+||..+...|+
T Consensus 870 ~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~ 942 (1394)
T TIGR00956 870 SKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSIC 942 (1394)
T ss_pred CHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHH
Confidence 443 4567788877754 36889998888999999999999999999997 99999999999999999999
Q ss_pred HHHHHH-cCCcEEEEEccChhhh--hhcCEEEEEeCC
Q 000463 1445 RIIREE-FAACTIISIAHRIPTV--MDCDRVIVVDAG 1478 (1479)
Q Consensus 1445 ~~I~~~-f~~~TvI~IAHRl~ti--~~~DrIlVL~~G 1478 (1479)
+.|++. .+++|||+++|++++. ..||+|++|++|
T Consensus 943 ~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~G 979 (1394)
T TIGR00956 943 KLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKG 979 (1394)
T ss_pred HHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCC
Confidence 999987 4689999999999974 459999999987
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-65 Score=642.57 Aligned_cols=436 Identities=21% Similarity=0.362 Sum_probs=334.0
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCccc--CCcEEEECCe------------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK--ISGKVKVCGT------------ 709 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~--~~G~i~~~g~------------ 709 (1479)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|.++| ++|+|.++|.
T Consensus 5 ~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeC---CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 589999999995 34799999999999999999999999999999999999986 8999999872
Q ss_pred --EEEEeccCcCC-CCcHHHHHhcCCCCC---hhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHH
Q 000463 710 --TAYVAQTSWIQ-NGTIEENILFGLPMN---RAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARA 783 (1479)
Q Consensus 710 --iayv~Q~~~i~-~~Tv~enI~fg~~~~---~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 783 (1479)
++|++|++.++ +.|++||+.++.... ....++..+ ...+-++.+... .....+..+|||||||||+||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~--~~~~~~~~~LSgGqkqrv~la~a 157 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL--RAQKLLAQLKLD--INPATPVGNLGLGQQQLVEIAKA 157 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH--HHHHHHHHcCCC--CCcccchhhCCHHHHHHHHHHHH
Confidence 79999998665 569999999875321 001111111 122234444332 23456778999999999999999
Q ss_pred HhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhcCcch
Q 000463 784 VYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNSGMDF 862 (1479)
Q Consensus 784 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~~~~f 862 (1479)
++.+|+++||||||++||+..+..+++.+.+...+|+|+|++||+++++.. ||++++|++|+++..|+.+++..
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~----- 232 (506)
T PRK13549 158 LNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTE----- 232 (506)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCH-----
Confidence 999999999999999999999999987666555568999999999999875 89999999999987654321100
Q ss_pred HHHHHHhhhhhhhhhccccCCCCCCCCCCCCCccccccccccCCCcccccccccCCCchhhhHHHHhcCcchHHHHHHHH
Q 000463 863 GALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYC 942 (1479)
Q Consensus 863 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~y~ 942 (1479)
++ ..
T Consensus 233 ---------------------------------------------------------------~~-------------~~ 236 (506)
T PRK13549 233 ---------------------------------------------------------------DD-------------II 236 (506)
T ss_pred ---------------------------------------------------------------HH-------------HH
Confidence 00 00
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 943 TEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIF 1022 (1479)
Q Consensus 943 ~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l 1022 (1479)
....+ .
T Consensus 237 ~~~~~--------------------------------~------------------------------------------ 242 (506)
T PRK13549 237 TMMVG--------------------------------R------------------------------------------ 242 (506)
T ss_pred HHhhC--------------------------------c------------------------------------------
Confidence 00000 0
Q ss_pred HHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000463 1023 FSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYW 1102 (1479)
Q Consensus 1023 ~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~ 1102 (1479)
+
T Consensus 243 -----------~-------------------------------------------------------------------- 243 (506)
T PRK13549 243 -----------E-------------------------------------------------------------------- 243 (506)
T ss_pred -----------C--------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHH
Q 000463 1103 YRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGS 1182 (1479)
Q Consensus 1103 ~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~ 1182 (1479)
T Consensus 244 -------------------------------------------------------------------------------- 243 (506)
T PRK13549 244 -------------------------------------------------------------------------------- 243 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCC
Q 000463 1183 FTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNW 1262 (1479)
Q Consensus 1183 ~~~~~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~w 1262 (1479)
.. + . .|.+. ++
T Consensus 244 -----------------~~------------------------------------~---~--~~~~~--------~~--- 254 (506)
T PRK13549 244 -----------------LT------------------------------------A---L--YPREP--------HT--- 254 (506)
T ss_pred -----------------cc------------------------------------c---c--ccccc--------cC---
Confidence 00 0 0 00000 00
Q ss_pred CCCccEEEEeeeeeecC-CCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC-CCccEEEEcCEecCCCCh-h
Q 000463 1263 PAHGNVDLIDLQVRYRS-NTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE-PSGGRIIIDGIDISLLGL-H 1339 (1479)
Q Consensus 1263 p~~g~I~~~nvs~~Y~~-~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-p~~G~I~IDG~dI~~i~l-~ 1339 (1479)
+....++++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+. +
T Consensus 255 ~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~ 334 (506)
T PRK13549 255 IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQ 334 (506)
T ss_pred CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHH
Confidence 01124899999999953 22459999999999999999999999999999999999999 599999999999875543 3
Q ss_pred hhhcceEEEcCcc---cccc-ccHhhhcCCC--CC------CC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCC
Q 000463 1340 DLRSRFGIIPQEP---VLFE-GTVRSNIDPI--GQ------YS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGD 1403 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp---~LF~-gTIR~NLdp~--~~------~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~ 1403 (1479)
..|++++++||+| .+|. .|+.+|+... .. .+ .+++.++++++++.+ ...|..+ .
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~ 404 (506)
T PRK13549 335 AIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT------ASPELAI----A 404 (506)
T ss_pred HHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC------CCccccc----c
Confidence 4577899999997 3565 5999999631 11 12 134667777776631 1123333 4
Q ss_pred CCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1404 NWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1404 nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
.||||||||++||||++++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||||++|++|+
T Consensus 405 ~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~ 482 (506)
T PRK13549 405 RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGK 482 (506)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999998764 47899999999999977 99999999995
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-62 Score=621.99 Aligned_cols=547 Identities=20% Similarity=0.250 Sum_probs=424.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 319 RTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGM 398 (1479)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~ 398 (1479)
++..++.+++.+.+..++.++..++..+.|+++..+++.+-....... -..++..+++..++..+......+...+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (576)
T TIGR02204 9 LWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGL-LNRYFAFLLVVALVLALGTAARFYLVTWLGE 87 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667778888888899999999999999999997432221111 1122222333334444455555667778999
Q ss_pred HHHHHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 399 LIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMML-QLHAVWLMPLQISVALILLYNCLGASVITTVVG 477 (1479)
Q Consensus 399 riR~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~lal~lL~~~lG~s~l~gl~~ 477 (1479)
++...+...+|+|.++++.....+.+.|+++|.++.|++++.+++. .+..++...+.+++++++++..-.+.+++.++.
T Consensus 88 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 167 (576)
T TIGR02204 88 RVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLA 167 (576)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999998887888999999999999999988753 344444444444444443332222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 478 IIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIV 557 (1479)
Q Consensus 478 ~il~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~ 557 (1479)
+++.+.+..+..+..++..++.++.++++.+...|.++|+++||.+++|+.+.++..+..++..+..++.....+....+
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (576)
T TIGR02204 168 VPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAI 247 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333456777888888999999999999999999999999999999988888776665444433332222221111
Q ss_pred HHH--HHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccc
Q 000463 558 MWS--TPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVER 635 (1479)
Q Consensus 558 ~~~--~p~~v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~ 635 (1479)
... ....+..+.++.+....+.++.+.+++...+...+..|+..++..+..+.+++++++||.++++.++..+.....
T Consensus 248 ~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~ 327 (576)
T TIGR02204 248 VIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHP 327 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCC
Confidence 111 122334445677777788899999999999999999999999999999999999999999999865431111111
Q ss_pred c-cCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC------
Q 000463 636 V-EGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------ 708 (1479)
Q Consensus 636 ~-~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------ 708 (1479)
. ...+....|+++|++|+|+++.++++|+|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.++|
T Consensus 328 ~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~ 407 (576)
T TIGR02204 328 KTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQL 407 (576)
T ss_pred ccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhc
Confidence 0 111123469999999999754336799999999999999999999999999999999999999999999998
Q ss_pred -------eEEEEeccCcCCCCcHHHHHhcCCC-CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHH
Q 000463 709 -------TTAYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQL 780 (1479)
Q Consensus 709 -------~iayv~Q~~~i~~~Tv~enI~fg~~-~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 780 (1479)
.++|+||+|+++++|++|||.+|.+ .++++..++++.+++.++++.+|.|.+|.+||+|.+||||||||++|
T Consensus 408 ~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~l 487 (576)
T TIGR02204 408 DPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAI 487 (576)
T ss_pred CHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHH
Confidence 4899999999999999999999875 45667778889999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcCc
Q 000463 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGM 860 (1479)
Q Consensus 781 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~ 860 (1479)
|||++++|+++|||||||+||+++++.+++.+.+ ..+++|+|+|||+++.++.+|+|++|++|++++.|+++++.++++
T Consensus 488 aRal~~~~~ililDEpts~lD~~~~~~i~~~l~~-~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~ 566 (576)
T TIGR02204 488 ARAILKDAPILLLDEATSALDAESEQLVQQALET-LMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGG 566 (576)
T ss_pred HHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCC
Confidence 9999999999999999999999999988765544 457899999999999999999999999999999999999998888
Q ss_pred chHHHHH
Q 000463 861 DFGALVA 867 (1479)
Q Consensus 861 ~f~~l~~ 867 (1479)
.|.++..
T Consensus 567 ~~~~l~~ 573 (576)
T TIGR02204 567 LYARLAR 573 (576)
T ss_pred hHHHHHh
Confidence 8877653
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-61 Score=620.57 Aligned_cols=540 Identities=20% Similarity=0.236 Sum_probs=418.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 321 TLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEG-YYLVLILLVAKFVEVFSTHQFNFNSQKLGML 399 (1479)
Q Consensus 321 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g-~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~r 399 (1479)
...+.+++.++...++.++..++..+.|+++..+++.+.......... ..+++++++..++..++.....+...+.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (592)
T PRK10790 16 AYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVG 95 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777888888999999999999999999764322211111 2223334444455555555556667788888
Q ss_pred HHHHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000463 400 IRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHA-VWLMPLQISVALILLYNCLGA-SVITTVVG 477 (1479)
Q Consensus 400 iR~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~~~~~-~w~~plqi~lal~lL~~~lG~-s~l~gl~~ 477 (1479)
+...+...+|+|.++++.....+.+.|+++|.++.|++++.+.+..... +....+.+++++.+++ .+++ .+++.+++
T Consensus 96 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~li~l~~ 174 (592)
T PRK10790 96 VVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMF-SLDWRMALVAIMI 174 (592)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 9999999999999999998888899999999999999999987654332 3322222333323232 2332 22222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 000463 478 IIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISG---- 553 (1479)
Q Consensus 478 ~il~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~---- 553 (1479)
+.+.+.+.....++.++..++..+..++-.+..+|.++|+++||.|+.|+.+.++..+..++..+...+.....+.
T Consensus 175 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (592)
T PRK10790 175 FPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRP 254 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333444556667777777788888888999999999999999999999998887665544332221111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccc
Q 000463 554 NIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESV 633 (1479)
Q Consensus 554 ~~~~~~~~p~~v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 633 (1479)
...++.....++.++.+ .+ ...+.++.+.+++++.++..+..|+..++..+..+.++++|.+||.++++.++.+....
T Consensus 255 ~~~~~~~~~~~~~~~~~-~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~ 332 (592)
T PRK10790 255 LLSLFSALILCGLLMLF-GF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND 332 (592)
T ss_pred HHHHHHHHHHHHHHHHH-HH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC
Confidence 11111111111111222 23 35667999999999999999999999999999999999999999999998654322111
Q ss_pred ccccCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe----
Q 000463 634 ERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT---- 709 (1479)
Q Consensus 634 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~---- 709 (1479)
.. ......|+++|++|+|++ ++++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 333 -~~--~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~ 407 (592)
T PRK10790 333 -DR--PLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSS 407 (592)
T ss_pred -cc--CCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhh
Confidence 11 112346999999999974 357999999999999999999999999999999999999999999999983
Q ss_pred ---------EEEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHH
Q 000463 710 ---------TAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQL 780 (1479)
Q Consensus 710 ---------iayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 780 (1479)
++||||+|.+|++|++|||.+|.+.++++..++++.+++.++++.+|.|.+|.+||+|.+||||||||++|
T Consensus 408 ~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRial 487 (592)
T PRK10790 408 LSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLAL 487 (592)
T ss_pred CCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHH
Confidence 89999999999999999999998888888899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcCc
Q 000463 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGM 860 (1479)
Q Consensus 781 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~ 860 (1479)
|||++++|+|+|||||||+||+++++++.+.+. ...+++|+|+|||+++.++.+|+|++|++|++++.|+++|+++.++
T Consensus 488 ARaLl~~~~illlDEpts~LD~~t~~~i~~~l~-~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~ 566 (592)
T PRK10790 488 ARVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQG 566 (592)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH-HHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 999999999999999999999999999976554 4456899999999999999999999999999999999999999889
Q ss_pred chHHHHHHh
Q 000463 861 DFGALVAAH 869 (1479)
Q Consensus 861 ~f~~l~~~~ 869 (1479)
.|.++.+..
T Consensus 567 ~y~~l~~~~ 575 (592)
T PRK10790 567 RYWQMYQLQ 575 (592)
T ss_pred HHHHHHHHH
Confidence 999887654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=634.30 Aligned_cols=436 Identities=21% Similarity=0.355 Sum_probs=330.7
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCccc--CCcEEEECC--------------
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK--ISGKVKVCG-------------- 708 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~--~~G~i~~~g-------------- 708 (1479)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 2 l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFG---GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeC---CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 78999999995 34699999999999999999999999999999999999986 799999987
Q ss_pred eEEEEeccCcCC-CCcHHHHHhcCCCCCh----hhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHH
Q 000463 709 TTAYVAQTSWIQ-NGTIEENILFGLPMNR----AKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARA 783 (1479)
Q Consensus 709 ~iayv~Q~~~i~-~~Tv~enI~fg~~~~~----~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 783 (1479)
.++|++|++.++ +.|++||+.++..... ...++..+ ...+-++.+...+. .......+|||||||||+||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~-~~~~~~~~LSgG~~qrv~iA~a 155 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL--RAKNLLRELQLDAD-NVTRPVGDYGGGQQQLVEIAKA 155 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH--HHHHHHHHcCCCCC-cccCchhhCCHHHHHHHHHHHH
Confidence 289999998765 5699999998753210 01111111 12223444432211 0123467899999999999999
Q ss_pred HhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhcCcch
Q 000463 784 VYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNSGMDF 862 (1479)
Q Consensus 784 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~~~~f 862 (1479)
++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++++.. ||+|++|++|+++..|+.+++.
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~------ 229 (500)
T TIGR02633 156 LNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS------ 229 (500)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC------
Confidence 999999999999999999999999988666555568999999999999875 8999999999997644211000
Q ss_pred HHHHHHhhhhhhhhhccccCCCCCCCCCCCCCccccccccccCCCcccccccccCCCchhhhHHHHhcCcchHHHHHHHH
Q 000463 863 GALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYC 942 (1479)
Q Consensus 863 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~y~ 942 (1479)
. +. . .
T Consensus 230 -------------------------------------------------------------~-~~---------~----~ 234 (500)
T TIGR02633 230 -------------------------------------------------------------E-DD---------I----I 234 (500)
T ss_pred -------------------------------------------------------------H-HH---------H----H
Confidence 0 00 0 0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 943 TEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIF 1022 (1479)
Q Consensus 943 ~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l 1022 (1479)
... .
T Consensus 235 ~~~------------------------------~---------------------------------------------- 238 (500)
T TIGR02633 235 TMM------------------------------V---------------------------------------------- 238 (500)
T ss_pred HHH------------------------------h----------------------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000463 1023 FSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYW 1102 (1479)
Q Consensus 1023 ~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~ 1102 (1479)
|
T Consensus 239 ---------------------~---------------------------------------------------------- 239 (500)
T TIGR02633 239 ---------------------G---------------------------------------------------------- 239 (500)
T ss_pred ---------------------C----------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHH
Q 000463 1103 YRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGS 1182 (1479)
Q Consensus 1103 ~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~ 1182 (1479)
+ +
T Consensus 240 -------------------~-~---------------------------------------------------------- 241 (500)
T TIGR02633 240 -------------------R-E---------------------------------------------------------- 241 (500)
T ss_pred -------------------c-c----------------------------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCC
Q 000463 1183 FTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNW 1262 (1479)
Q Consensus 1183 ~~~~~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~w 1262 (1479)
.. + ..+.+. . +
T Consensus 242 -----------------~~------------------------------------~-----~~~~~~------~-~---- 252 (500)
T TIGR02633 242 -----------------IT------------------------------------S-----LYPHEP------H-E---- 252 (500)
T ss_pred -----------------cc------------------------------------c-----cccccc------c-C----
Confidence 00 0 000000 0 0
Q ss_pred CCCccEEEEeeeeeecCC-CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC-CccEEEEcCEecCCCCh-h
Q 000463 1263 PAHGNVDLIDLQVRYRSN-TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP-SGGRIIIDGIDISLLGL-H 1339 (1479)
Q Consensus 1263 p~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-~~G~I~IDG~dI~~i~l-~ 1339 (1479)
+..--++++|++++|+.+ ...+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.++|.++...+. .
T Consensus 253 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~ 332 (500)
T TIGR02633 253 IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQ 332 (500)
T ss_pred CCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHH
Confidence 011248999999999532 23599999999999999999999999999999999999995 89999999999875443 5
Q ss_pred hhhcceEEEcCcc---cccc-ccHhhhcCCC-----CC---CC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCC
Q 000463 1340 DLRSRFGIIPQEP---VLFE-GTVRSNIDPI-----GQ---YS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGD 1403 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp---~LF~-gTIR~NLdp~-----~~---~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~ 1403 (1479)
.+|++++++||++ .+|. .|+++|+... .. .. .+++.+++++.++.+ .-.|.++ .
T Consensus 333 ~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~ 402 (500)
T TIGR02633 333 AIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT------ASPFLPI----G 402 (500)
T ss_pred HHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC------CCccCcc----c
Confidence 6788999999997 3665 4999999642 11 11 234667777776631 1123333 3
Q ss_pred CCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1404 NWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1404 nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
.||||||||++|||||+++|++|||||||++||+.+.+.+++.|++.. ++.|||+|||+++.+.+ ||||++|++|+
T Consensus 403 ~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~ 480 (500)
T TIGR02633 403 RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGK 480 (500)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 599999999999999999999999999999999999999999998864 47899999999999987 99999999985
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-64 Score=636.80 Aligned_cols=433 Identities=26% Similarity=0.436 Sum_probs=329.1
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCc--ccCCcEEEEC---------------
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEM--HKISGKVKVC--------------- 707 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~--~~~~G~i~~~--------------- 707 (1479)
|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEEC---CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 46899999995 347999999999999999999999999999999999997 7999999885
Q ss_pred --------C-----------------------eEEEEecc-CcCC-CCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHh
Q 000463 708 --------G-----------------------TTAYVAQT-SWIQ-NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEM 754 (1479)
Q Consensus 708 --------g-----------------------~iayv~Q~-~~i~-~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~ 754 (1479)
| .++|++|+ +.++ ..|++||+.++........++.. ....+-++.
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~--~~~~~~l~~ 155 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAV--GRAVDLIEM 155 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHH--HHHHHHHHH
Confidence 1 27999997 4444 56999999875321100001110 111222333
Q ss_pred cccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCcccc
Q 000463 755 MEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLH 833 (1479)
Q Consensus 755 l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~ 833 (1479)
+... ........+|||||||||+||||++.+|+++||||||++||+.+.+.+.+.+.+... .|+|||+||||++++.
T Consensus 156 ~gl~--~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~ 233 (520)
T TIGR03269 156 VQLS--HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIE 233 (520)
T ss_pred cCCh--hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 3221 223467789999999999999999999999999999999999999999876665544 4899999999999986
Q ss_pred c-CCEEEEEeCCEEEEecChHHHHhcCcchHHHHHHhhhhhhhhhccccCCCCCCCCCCCCCccccccccccCCCccccc
Q 000463 834 N-VDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQ 912 (1479)
Q Consensus 834 ~-~D~i~~l~~G~i~~~g~~~~l~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1479)
. ||+|++|++|+++..|+++++...
T Consensus 234 ~~~d~i~~l~~G~i~~~g~~~~~~~~------------------------------------------------------ 259 (520)
T TIGR03269 234 DLSDKAIWLENGEIKEEGTPDEVVAV------------------------------------------------------ 259 (520)
T ss_pred HhcCEEEEEeCCEEeeecCHHHHHHH------------------------------------------------------
Confidence 5 899999999999876654332100
Q ss_pred ccccCCCchhhhHHHHhcCcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHH
Q 000463 913 SNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGV 992 (1479)
Q Consensus 913 ~~~~~~~~~l~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v 992 (1479)
|.. .
T Consensus 260 ----------------------------~~~---~--------------------------------------------- 263 (520)
T TIGR03269 260 ----------------------------FME---G--------------------------------------------- 263 (520)
T ss_pred ----------------------------HHh---h---------------------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHH
Q 000463 993 YGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMY 1072 (1479)
Q Consensus 993 y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~ 1072 (1479)
T Consensus 264 -------------------------------------------------------------------------------- 263 (520)
T TIGR03269 264 -------------------------------------------------------------------------------- 263 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHH
Q 000463 1073 ITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQEN 1152 (1479)
Q Consensus 1073 ~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~ 1152 (1479)
..+
T Consensus 264 -----------------------------------------~~~------------------------------------ 266 (520)
T TIGR03269 264 -----------------------------------------VSE------------------------------------ 266 (520)
T ss_pred -----------------------------------------chh------------------------------------
Confidence 000
Q ss_pred HHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 1153 VNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENR 1232 (1479)
Q Consensus 1153 ~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~ 1232 (1479)
.+
T Consensus 267 ----------------------------------------------------------------------------~~-- 268 (520)
T TIGR03269 267 ----------------------------------------------------------------------------VE-- 268 (520)
T ss_pred ----------------------------------------------------------------------------hc--
Confidence 00
Q ss_pred hhhHHHHHHhhcCccchhccccCCCCCCCCCCCccEEEEeeeeeecC---CCCcceeeeeEEEeCCcEEEEECCCCCCHH
Q 000463 1233 MVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRS---NTPLVLKGITLSIHGGEKIGVVGRTGSGKS 1309 (1479)
Q Consensus 1233 ~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~---~~~~vL~~is~~I~~GekvgIVGrTGSGKS 1309 (1479)
. +.. .+. ...-++++|++++|.. +...+|+|+||+|++||++||+|+||||||
T Consensus 269 -----~-------~~~--------~~~----~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKS 324 (520)
T TIGR03269 269 -----K-------ECE--------VEV----GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKT 324 (520)
T ss_pred -----c-------ccc--------cCC----CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHH
Confidence 0 000 000 1125999999999953 234699999999999999999999999999
Q ss_pred HHHHHHhccCCCCccEEEEc-CE---ecCCCC---hhhhhcceEEEcCccccccc-cHhhhcCC-CC-CC----CHHHHH
Q 000463 1310 TLIQVFFRLVEPSGGRIIID-GI---DISLLG---LHDLRSRFGIIPQEPVLFEG-TVRSNIDP-IG-QY----SDEEIW 1375 (1479)
Q Consensus 1310 TLl~~L~rl~~p~~G~I~ID-G~---dI~~i~---l~~LR~~i~iIpQdp~LF~g-TIR~NLdp-~~-~~----sd~eI~ 1375 (1479)
||+++|.|+.+|++|+|.++ |. ++...+ ...+|++++++||++.+|.. |+++|+.. .. .. .++++.
T Consensus 325 TLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 404 (520)
T TIGR03269 325 TLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAV 404 (520)
T ss_pred HHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999999996 64 344333 23467789999999988875 99999952 11 11 234567
Q ss_pred HHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--C
Q 000463 1376 KSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--A 1453 (1479)
Q Consensus 1376 ~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~ 1453 (1479)
++++.+++.+.- .++-++.++ ..||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+ +
T Consensus 405 ~~l~~~~l~~~~--~~~~~~~~~----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g 478 (520)
T TIGR03269 405 ITLKMVGFDEEK--AEEILDKYP----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEME 478 (520)
T ss_pred HHHHhCCCCCcc--chhhhhCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 788888875310 000112222 36899999999999999999999999999999999999999999988643 7
Q ss_pred cEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1454 CTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1454 ~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
.|||+|+|+++.+.. ||||++|++|+
T Consensus 479 ~tvi~vsHd~~~~~~~~d~i~~l~~G~ 505 (520)
T TIGR03269 479 QTFIIVSHDMDFVLDVCDRAALMRDGK 505 (520)
T ss_pred cEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 899999999999987 99999999985
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-64 Score=633.07 Aligned_cols=429 Identities=19% Similarity=0.337 Sum_probs=329.7
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--------------e
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------------T 709 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------~ 709 (1479)
.|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~i~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFP---GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeC---CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 589999999995 35799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEeccCcCC-CCcHHHHHhcCCCCC----hhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHH
Q 000463 710 TAYVAQTSWIQ-NGTIEENILFGLPMN----RAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAV 784 (1479)
Q Consensus 710 iayv~Q~~~i~-~~Tv~enI~fg~~~~----~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 784 (1479)
++|++|++-++ +.|++||+.++.... .....+..+ ...+-++.+..++ .......+|||||||||+|||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~--~~~~~~~~LSgG~~qrv~la~al 156 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA--EADKLLARLNLRF--SSDKLVGELSIGEQQMVEIAKVL 156 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH--HHHHHHHHcCCCC--CccCchhhCCHHHHHHHHHHHHH
Confidence 79999997654 569999999874321 000111101 1222344443332 23466789999999999999999
Q ss_pred hcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhcCcchH
Q 000463 785 YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNSGMDFG 863 (1479)
Q Consensus 785 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~~~~f~ 863 (1479)
+.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++++.. ||+|++|++|+++..|+.+++..
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~------ 230 (501)
T PRK10762 157 SFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE------ 230 (501)
T ss_pred hcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH------
Confidence 99999999999999999999999987665554568999999999999865 89999999999987654321100
Q ss_pred HHHHHhhhhhhhhhccccCCCCCCCCCCCCCccccccccccCCCcccccccccCCCchhhhHHHHhcCcchHHHHHHHHH
Q 000463 864 ALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCT 943 (1479)
Q Consensus 864 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~y~~ 943 (1479)
++ ...
T Consensus 231 --------------------------------------------------------------~~-------------~~~ 235 (501)
T PRK10762 231 --------------------------------------------------------------DS-------------LIE 235 (501)
T ss_pred --------------------------------------------------------------HH-------------HHH
Confidence 00 000
Q ss_pred HhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 944 EAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFF 1023 (1479)
Q Consensus 944 ~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~ 1023 (1479)
... . .
T Consensus 236 ~~~-----------------------------~---~------------------------------------------- 240 (501)
T PRK10762 236 MMV-----------------------------G---R------------------------------------------- 240 (501)
T ss_pred Hhc-----------------------------C---C-------------------------------------------
Confidence 000 0 0
Q ss_pred HHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000463 1024 SQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWY 1103 (1479)
Q Consensus 1024 ~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~ 1103 (1479)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK10762 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHH
Q 000463 1104 RGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSF 1183 (1479)
Q Consensus 1104 ~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~ 1183 (1479)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK10762 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCC
Q 000463 1184 TFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWP 1263 (1479)
Q Consensus 1184 ~~~~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp 1263 (1479)
+.. ..++..+ .+ |
T Consensus 241 ------------------------------------------------------~~~---~~~~~~~-------~~---~ 253 (501)
T PRK10762 241 ------------------------------------------------------KLE---DQYPRLD-------KA---P 253 (501)
T ss_pred ------------------------------------------------------Ccc---ccccccc-------cC---C
Confidence 000 0000000 00 0
Q ss_pred CCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChh-hhh
Q 000463 1264 AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLH-DLR 1342 (1479)
Q Consensus 1264 ~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~-~LR 1342 (1479)
..-.++++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+.. .+|
T Consensus 254 ~~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~ 326 (501)
T PRK10762 254 GEVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLA 326 (501)
T ss_pred CCcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHH
Confidence 112488999984 279999999999999999999999999999999999999999999999999876653 467
Q ss_pred cceEEEcCcc---cccc-ccHhhhcCCC-----CC----CC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCC
Q 000463 1343 SRFGIIPQEP---VLFE-GTVRSNIDPI-----GQ----YS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNW 1405 (1479)
Q Consensus 1343 ~~i~iIpQdp---~LF~-gTIR~NLdp~-----~~----~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1405 (1479)
++++|+||+| .+|. -|+++|+... .. .+ ++++.++++++++.+ ...+.++ ..|
T Consensus 327 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~L 396 (501)
T PRK10762 327 NGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT------PSMEQAI----GLL 396 (501)
T ss_pred CCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC------CCccCch----hhC
Confidence 8899999997 3554 5999999631 00 11 234667777776631 1123333 469
Q ss_pred CchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1406 SVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1406 SgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||||++|++|+
T Consensus 397 SgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 472 (501)
T PRK10762 397 SGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR 472 (501)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999864 47899999999999977 99999999985
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-64 Score=631.36 Aligned_cols=438 Identities=23% Similarity=0.396 Sum_probs=333.2
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--------------
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------- 708 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------- 708 (1479)
..++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 10 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 10 PLLCARSISKQYS---GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQL 86 (510)
T ss_pred ceEEEEeEEEEeC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 3699999999995 24699999999999999999999999999999999999999999999987
Q ss_pred eEEEEeccCcCC-CCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcC
Q 000463 709 TTAYVAQTSWIQ-NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD 787 (1479)
Q Consensus 709 ~iayv~Q~~~i~-~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 787 (1479)
.++|++|++.++ +.|++||+.++.....+..++ ..+-++.+... .....+..+|||||||||+|||||+.+
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~------~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQK------MKQLLAALGCQ--LDLDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhcccccchHHHHH------HHHHHHHcCCC--ccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 278999998765 469999999975322111111 12223333322 223567789999999999999999999
Q ss_pred CCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhcCcchHHHH
Q 000463 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNSGMDFGALV 866 (1479)
Q Consensus 788 ~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~~~~f~~l~ 866 (1479)
|+++||||||++||+...+.+.+.+.+...+|+|+|++||+++++.. ||+|++|++|++++.|+++++... +..
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-----~~~ 233 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD-----DII 233 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHH-----HHH
Confidence 99999999999999999999987766655568999999999999865 999999999999988877654321 000
Q ss_pred HHhhhhhhhhhccccCCCCCCCCCCCCCccccccccccCCCcccccccccCCCchhhhHHHHhcCcchHHHHHHHHHHhh
Q 000463 867 AAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAY 946 (1479)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~y~~~~~ 946 (1479)
. ... .. . .
T Consensus 234 ~-------~~~---~~----------------------------~--~-------------------------------- 241 (510)
T PRK15439 234 Q-------AIT---PA----------------------------A--R-------------------------------- 241 (510)
T ss_pred H-------HHh---Cc----------------------------c--c--------------------------------
Confidence 0 000 00 0 0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 947 GWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQI 1026 (1479)
Q Consensus 947 g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l 1026 (1479)
.. ..
T Consensus 242 ----------------------------~~---~~--------------------------------------------- 245 (510)
T PRK15439 242 ----------------------------EK---SL--------------------------------------------- 245 (510)
T ss_pred ----------------------------cc---cc---------------------------------------------
Confidence 00 00
Q ss_pred HHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000463 1027 LRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGY 1106 (1479)
Q Consensus 1027 l~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~ 1106 (1479)
T Consensus 246 -------------------------------------------------------------------------------- 245 (510)
T PRK15439 246 -------------------------------------------------------------------------------- 245 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHH
Q 000463 1107 YLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFC 1186 (1479)
Q Consensus 1107 y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~ 1186 (1479)
+..
T Consensus 246 -----~~~------------------------------------------------------------------------ 248 (510)
T PRK15439 246 -----SAS------------------------------------------------------------------------ 248 (510)
T ss_pred -----ccc------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCc
Q 000463 1187 LATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHG 1266 (1479)
Q Consensus 1187 ~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g 1266 (1479)
.+. .+ ..|...+ ..+ +..-
T Consensus 249 --------------------------------------------------~~~-~~-~~~~~~~------~~~---~~~~ 267 (510)
T PRK15439 249 --------------------------------------------------QKL-WL-ELPGNRR------QQA---AGAP 267 (510)
T ss_pred --------------------------------------------------ccc-cc-ccccccc------ccC---CCCc
Confidence 000 00 0000000 000 0112
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhh-hhcce
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD-LRSRF 1345 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i 1345 (1479)
-++++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+... .|+++
T Consensus 268 ~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 268 VLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred eEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 489999983 1699999999999999999999999999999999999999999999999998776654 46789
Q ss_pred EEEcCcc---ccccc-cHhhhcCCC-----CC--CC---HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHH
Q 000463 1346 GIIPQEP---VLFEG-TVRSNIDPI-----GQ--YS---DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1346 ~iIpQdp---~LF~g-TIR~NLdp~-----~~--~s---d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
+|+||++ .+|.. |+++|+... .. .. ++++.++++..++.. ...+.++ ..|||||||
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~LSgG~kq 410 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF------NHAEQAA----RTLSGGNQQ 410 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC------CCccCcc----ccCCcHHHH
Confidence 9999996 36654 999998421 10 01 233556667666531 1233333 469999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.+ ||||++|++|+
T Consensus 411 rl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~ 480 (510)
T PRK15439 411 KVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGE 480 (510)
T ss_pred HHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999864 47899999999999987 99999999995
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-62 Score=656.32 Aligned_cols=202 Identities=18% Similarity=0.280 Sum_probs=177.1
Q ss_pred ccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcce
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRF 1345 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1345 (1479)
..|+++|++++|+.....+|+||||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++.+ +.++.|++|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 4699999999997543569999999999999999999999999999999999999999999999999965 466788999
Q ss_pred EEEcCccccccc-cHhhhcCCC---CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHH
Q 000463 1346 GIIPQEPVLFEG-TVRSNIDPI---GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGR 1417 (1479)
Q Consensus 1346 ~iIpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1417 (1479)
|++||++.++.. |+||||..+ ...+ ++.+.++++.++|.++..+.+ ..||||||||+++||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~-----------~~LSGGqKqRLslA~ 2083 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA-----------GTYSGGNKRKLSTAI 2083 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999998865 999999632 1122 234567788899887655443 358999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1418 VMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1418 ALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||+.+|+||+|||||++||+.+.+.+++.|++.. +++|||++||+++.+.. ||||++|++|+
T Consensus 2084 ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~ 2147 (2272)
T TIGR01257 2084 ALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGA 2147 (2272)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999863 57999999999999987 99999999995
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-61 Score=610.91 Aligned_cols=528 Identities=20% Similarity=0.236 Sum_probs=412.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 000463 338 IVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSC 417 (1479)
Q Consensus 338 l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~riR~~L~~~Iy~K~L~ls~ 417 (1479)
++..++..+.|++++.++|.+.+........+.+++.++++.++..++.....+...+.+.++...+...+|+|.++++.
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 84 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHP 84 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 44556667789999999997754321122233344445555555556555555566678889999999999999999999
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 418 SARQAHGVGQIVNYMAVDAQQLSDMML-QLHAVWLMPLQISVALILLYNCLGAS-VITTVVGIIGVMIFVVMGTKRNNRF 495 (1479)
Q Consensus 418 ~~~~~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~lal~lL~~~lG~s-~l~gl~~~il~~~~~~~~~~~~~~~ 495 (1479)
....++.+|+++|.++.|++++..... .+..++..++..++++++++..++|. +++.++++++.+.+...+.++.++.
T Consensus 85 ~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 85 EFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred HHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999986653 45555655555555554443345542 3333333444444455566777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 000463 496 QFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMWSTP--VLISTLTFATA 573 (1479)
Q Consensus 496 q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~~~~p--~~v~~~tF~~~ 573 (1479)
.++..+..++..+...|.++|+++||.|++|+.+.++..+.-++..+...+.....+....+..... ..+.++.++.+
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 244 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSW 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777778889999999999999999999997777765443322222222222222111111111 12233456667
Q ss_pred HHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccccccCCCCCccEEEEeeEEE
Q 000463 574 LLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFS 653 (1479)
Q Consensus 574 ~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~ 653 (1479)
...++.+|.+.+++++.++..+..|+..++..+..+.+++++.+||.++++.++..+.... +....+..|+++|++|+
T Consensus 245 lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~--~~~~~~~~I~~~~v~~~ 322 (569)
T PRK10789 245 MVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE--PVPEGRGELDVNIRQFT 322 (569)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC--CCCCCCCcEEEEEEEEE
Confidence 6778889999999999999999999999999999999999999999999986543221111 11112346999999999
Q ss_pred ecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-------------EEEEeccCcCC
Q 000463 654 WDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------TAYVAQTSWIQ 720 (1479)
Q Consensus 654 ~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------iayv~Q~~~i~ 720 (1479)
|+.+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|+|+++
T Consensus 323 y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf 401 (569)
T PRK10789 323 YPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLF 401 (569)
T ss_pred CCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeec
Confidence 9743 357999999999999999999999999999999999999999999999873 79999999999
Q ss_pred CCcHHHHHhcCCC-CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEEEeCccCC
Q 000463 721 NGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSA 799 (1479)
Q Consensus 721 ~~Tv~enI~fg~~-~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~sa 799 (1479)
++|++|||.+|.+ .+++..+++++.+++.+++..+|.|.+|.+|++|.+||||||||++||||++++|+++|||||||+
T Consensus 402 ~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~ 481 (569)
T PRK10789 402 SDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSA 481 (569)
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccc
Confidence 9999999999964 566777888888999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcCcchHHHHHHh
Q 000463 800 VDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAH 869 (1479)
Q Consensus 800 LD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~f~~l~~~~ 869 (1479)
||+++++++.+.+.+ ..+|+|+|+|||+++.++.+|+|++|++|++++.|++++++++++.|.++...+
T Consensus 482 LD~~~~~~i~~~l~~-~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 482 VDGRTEHQILHNLRQ-WGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred CCHHHHHHHHHHHHH-HhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 999999999876544 457999999999999999999999999999999999999998888888877543
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-61 Score=608.97 Aligned_cols=539 Identities=20% Similarity=0.254 Sum_probs=411.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 322 LLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTS-GKSS--SFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGM 398 (1479)
Q Consensus 322 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~--~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~ 398 (1479)
..+.+++.++++.++.++..++..+.|.++..+++-.- .+.. ........++++++..++..++.....+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888999999999999999999998542 2210 01111112223333444555555555566778889
Q ss_pred HHHHHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 000463 399 LIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQ-LHAVWLMPLQISVALILLY---NCLGASVITT 474 (1479)
Q Consensus 399 riR~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~~-~~~~w~~plqi~lal~lL~---~~lG~s~l~g 474 (1479)
++...+...+|+|.++++....++..+|++++.++.|++++.+++.. +..+....+.+++++++++ ..+++.++++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888899999999999999999997743 3344444444444444333 2233322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 475 VVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGN 554 (1479)
Q Consensus 475 l~~~il~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~ 554 (1479)
+.+++ ..+..++.++.++..++..+..++....+.|.++|+++||.|+.|+.+.++..+..++-.+...+.....+..
T Consensus 170 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (574)
T PRK11160 170 LLLLL--LLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLS 247 (574)
T ss_pred HHHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 1223445667777788888888888899999999999999999999988888776554444333333333322
Q ss_pred HHHHHHHH-H-HHHHHHHHHHHHhcCccCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccc
Q 000463 555 IIVMWSTP-V-LISTLTFATALLFGVPLDAGSVFTTTTIFKI-LQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNE 631 (1479)
Q Consensus 555 ~~~~~~~p-~-~v~~~tF~~~~l~~~~Lt~~~vFt~lalf~i-L~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 631 (1479)
..+..... . .+.++.++.+. ..+.++.+..++++.+..+ ...|+..++..+..+.++++|.+||.++++.++..++
T Consensus 248 ~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~ 326 (574)
T PRK11160 248 QALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF 326 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 22221111 1 12233445554 4667888887776655433 3468888999999999999999999999986543211
Q ss_pred ccccccCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe--
Q 000463 632 SVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-- 709 (1479)
Q Consensus 632 ~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-- 709 (1479)
.... +.......|+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 327 ~~~~-~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i 404 (574)
T PRK11160 327 PTTS-TAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPI 404 (574)
T ss_pred Cccc-CCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEh
Confidence 1010 111123579999999999643 347999999999999999999999999999999999999999999999983
Q ss_pred -----------EEEEeccCcCCCCcHHHHHhcCCC-CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHH
Q 000463 710 -----------TAYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQR 777 (1479)
Q Consensus 710 -----------iayv~Q~~~i~~~Tv~enI~fg~~-~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 777 (1479)
++||||+|+++++|++|||.+|.+ .+++...++++.+++.++++. |+|.+|.+||+|.+||||||||
T Consensus 405 ~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqR 483 (574)
T PRK11160 405 ADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRR 483 (574)
T ss_pred hhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHH
Confidence 799999999999999999999875 466777888999999999999 9999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHh
Q 000463 778 IQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 778 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
++||||++++|+++|||||||+||+++++++.+.+. ...+++|+|+|||+++.++.||+|++|++|++++.|+++|+++
T Consensus 484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~-~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLA-EHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999987554 4457899999999999999999999999999999999999999
Q ss_pred cCcchHHHHH
Q 000463 858 SGMDFGALVA 867 (1479)
Q Consensus 858 ~~~~f~~l~~ 867 (1479)
+++.|.++.+
T Consensus 563 ~~g~y~~l~~ 572 (574)
T PRK11160 563 QQGRYYQLKQ 572 (574)
T ss_pred cCcHHHHHHh
Confidence 9888887754
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-61 Score=621.71 Aligned_cols=544 Identities=22% Similarity=0.234 Sum_probs=432.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 319 RTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGM 398 (1479)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~ 398 (1479)
+...++.+++.+....+..++..++.++.|++++.++|.+-.... ...-+.++++++++.++..++.....+...+++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~-~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (694)
T TIGR01846 130 FIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG-LSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTS 208 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667778888888889999999999999999997643221 1122334445555556666666666777778999
Q ss_pred HHHHHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 399 LIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMML-QLHAVWLMPLQISVALILLYNCLGASVITTVVG 477 (1479)
Q Consensus 399 riR~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~lal~lL~~~lG~s~l~gl~~ 477 (1479)
++...+...+|+|.++++.....+.++|+++|.+ .|++.+.+++. .+..+....+.+++.+.+++..-++-+++.+++
T Consensus 209 ~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~ 287 (694)
T TIGR01846 209 RIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGS 287 (694)
T ss_pred HHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988889999999999 59999998753 333333233333333434433333333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 478 IIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIV 557 (1479)
Q Consensus 478 ~il~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~ 557 (1479)
+++...+..++.+..++..++.++..+++...+.|.++|+++||.++.|+.+.++..+.-++..+...+.....+.....
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (694)
T TIGR01846 288 LVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQA 367 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555667777788888888999999999999999999999999999988888776655554444433333332222
Q ss_pred HHHHHH--HHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccc
Q 000463 558 MWSTPV--LISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVER 635 (1479)
Q Consensus 558 ~~~~p~--~v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~ 635 (1479)
...... .+.++.++.+....+.+|.+.+.++..+...+..|+..+...+..+.+++++++|+.++++.++..+.. ..
T Consensus 368 ~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~ 446 (694)
T TIGR01846 368 IELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GL 446 (694)
T ss_pred HHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CC
Confidence 222221 223456777777788999999999999999999999999999999999999999999999876433211 11
Q ss_pred ccCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe------
Q 000463 636 VEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------ 709 (1479)
Q Consensus 636 ~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------ 709 (1479)
.+....+..|+++|++|+|+++ ++++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 447 ~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~ 525 (694)
T TIGR01846 447 AALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIAD 525 (694)
T ss_pred CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCC
Confidence 1111223579999999999743 357999999999999999999999999999999999999999999999983
Q ss_pred -------EEEEeccCcCCCCcHHHHHhcCCC-CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHH
Q 000463 710 -------TAYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLA 781 (1479)
Q Consensus 710 -------iayv~Q~~~i~~~Tv~enI~fg~~-~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 781 (1479)
++||||+|.++++|++|||.++.+ .+++...++++.+++.+.++.+|.|.+|.+|++|.+||||||||++||
T Consensus 526 ~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lA 605 (694)
T TIGR01846 526 PAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIA 605 (694)
T ss_pred HHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHH
Confidence 799999999999999999999865 456667778888899999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcCcc
Q 000463 782 RAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMD 861 (1479)
Q Consensus 782 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~ 861 (1479)
||++++|+++|||||||+||+++++++.+.+.+ ..+++|+|++||+++.++.||+|++|++|++++.|+++++++.++.
T Consensus 606 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~-~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~ 684 (694)
T TIGR01846 606 RALVGNPRILIFDEATSALDYESEALIMRNMRE-ICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGL 684 (694)
T ss_pred HHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHH-HhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCCh
Confidence 999999999999999999999999999876544 4578999999999999999999999999999999999999998888
Q ss_pred hHHHHH
Q 000463 862 FGALVA 867 (1479)
Q Consensus 862 f~~l~~ 867 (1479)
|.++..
T Consensus 685 y~~l~~ 690 (694)
T TIGR01846 685 YARLWQ 690 (694)
T ss_pred HHHHHH
Confidence 988765
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=610.28 Aligned_cols=538 Identities=22% Similarity=0.282 Sum_probs=415.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 322 LLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIR 401 (1479)
Q Consensus 322 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~riR 401 (1479)
.++.+++.+.+..++.++..++..+.|+++..++|.+..+. ..+ .++..+.+..++..+......+...++..++|
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK13657 13 YLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-DIF---PLLAAWAGFGLFNIIAGVLVARHADRLAHRRR 88 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777778888888999999999999999999775432 111 11111111222222222233445667888889
Q ss_pred HHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000463 402 CTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMML-QLHAVWLMPLQISVALILLYNCLGA-SVITTVVGII 479 (1479)
Q Consensus 402 ~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~lal~lL~~~lG~-s~l~gl~~~i 479 (1479)
..+...+|+|.++++.....+.+.|++++.++.|++.+.+... .+.......+..++.+++++. +++ .+++.+++++
T Consensus 89 ~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~l~~~~ 167 (588)
T PRK13657 89 LAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALF-MNWRLSLVLVVLGI 167 (588)
T ss_pred HHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 9999999999999999888889999999999999999876533 222222222222222222222 222 2233333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 000463 480 GVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRES----EFGWLTKFMYSISGNI 555 (1479)
Q Consensus 480 l~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~----El~~l~k~~~~~a~~~ 555 (1479)
+...+...+.++.++.+++.++..++......|.++|+++||.|+.|+.+.++..+.-++ +.+..+..........
T Consensus 168 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (588)
T PRK13657 168 VYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNR 247 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456677788888899999999999999999999999999999999876666544433 3333222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccc
Q 000463 556 IVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVER 635 (1479)
Q Consensus 556 ~~~~~~p~~v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~ 635 (1479)
+ ...-..+.++.++.+....+.+|.+.+++++.++..+..|+..+...+..+.+++.+++|+.++++.++..+.....
T Consensus 248 ~--~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 325 (588)
T PRK13657 248 A--ASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGA 325 (588)
T ss_pred H--HHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCC
Confidence 1 11122334556777777888999999999999999999999999999999999999999999999764432111111
Q ss_pred ccCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------
Q 000463 636 VEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------- 708 (1479)
Q Consensus 636 ~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------- 708 (1479)
.+....+..|+++|++|+|++ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 326 ~~~~~~~~~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~ 403 (588)
T PRK13657 326 IDLGRVKGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVT 403 (588)
T ss_pred CCcCCCCCeEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCC
Confidence 111112346999999999963 24699999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEeccCcCCCCcHHHHHhcCCC-CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHH
Q 000463 709 ------TTAYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLA 781 (1479)
Q Consensus 709 ------~iayv~Q~~~i~~~Tv~enI~fg~~-~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 781 (1479)
.++||||+|+++++|+||||.++.+ .+++...++++.+++.+.+..+|.|.+|.+|++|.+||||||||++||
T Consensus 404 ~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialA 483 (588)
T PRK13657 404 RASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIA 483 (588)
T ss_pred HHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHH
Confidence 4899999999999999999999964 456667788899999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcCcc
Q 000463 782 RAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMD 861 (1479)
Q Consensus 782 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~ 861 (1479)
||++++|+|+|||||||+||+++++.+++.+.+ ..+++|+|+|||+++.++.||+|++|++|++++.|+++++++.++.
T Consensus 484 Rall~~~~iliLDEpts~LD~~t~~~i~~~l~~-~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~ 562 (588)
T PRK13657 484 RALLKDPPILILDEATSALDVETEAKVKAALDE-LMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGR 562 (588)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH-HhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCCh
Confidence 999999999999999999999999999876644 4568999999999999999999999999999999999999988888
Q ss_pred hHHHHHHh
Q 000463 862 FGALVAAH 869 (1479)
Q Consensus 862 f~~l~~~~ 869 (1479)
|.++....
T Consensus 563 y~~l~~~~ 570 (588)
T PRK13657 563 FAALLRAQ 570 (588)
T ss_pred HHHHHHHh
Confidence 88877643
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-61 Score=607.62 Aligned_cols=504 Identities=17% Similarity=0.209 Sum_probs=385.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 322 LLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIR 401 (1479)
Q Consensus 322 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~riR 401 (1479)
..+.+++.++...++.++..++..+.|++++.+++.+...+. ...-+.+..++++..++..++.....+...+.+.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (529)
T TIGR02868 7 LLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSL 85 (529)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777788888899999999999999999986643321 1110111111222333444444444455567888888
Q ss_pred HHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 402 CTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQL-HAVWLMPLQISVALILLYNCLGASVITTVVGIIG 480 (1479)
Q Consensus 402 ~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~~~-~~~w~~plqi~lal~lL~~~lG~s~l~gl~~~il 480 (1479)
..+...+|+|.++++....++.++|+++|.++.|++++.+.+... ..+....+.+++++++++..-...+++.++.+++
T Consensus 86 ~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~ 165 (529)
T TIGR02868 86 GRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLL 165 (529)
T ss_pred HHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 899999999999999988888999999999999999999876543 3334444444444444332222222222222222
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 481 VMIFV-VMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMW 559 (1479)
Q Consensus 481 ~~~~~-~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~~ 559 (1479)
+..+. .+..+..++..++..+..++..+...|.++|+++||.|++|+.+.++..+..++..+...+.....+....+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (529)
T TIGR02868 166 AGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQL 245 (529)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 22334445566677788899999999999999999999999999999888776655555444444443332222
Q ss_pred HHHHH--HHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccccc
Q 000463 560 STPVL--ISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVE 637 (1479)
Q Consensus 560 ~~p~~--v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~ 637 (1479)
....+ +.++.++.+...++.++.+.+.+.+.+...+..|+..++..+..+.++++|.+|+.++++.++..++.....+
T Consensus 246 ~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~ 325 (529)
T TIGR02868 246 LAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAA 325 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCC
Confidence 22222 2233556666677889999999999999999999999999999999999999999999986543221110000
Q ss_pred --CCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------
Q 000463 638 --GCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------- 708 (1479)
Q Consensus 638 --~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------- 708 (1479)
.......|+++|++|+|+++ +++|+|+||++++||+++|+||+|||||||+++|+|+++|++|+|.++|
T Consensus 326 ~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~ 403 (529)
T TIGR02868 326 GALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQ 403 (529)
T ss_pred cccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHH
Confidence 11123469999999999643 4699999999999999999999999999999999999999999999999
Q ss_pred -----eEEEEeccCcCCCCcHHHHHhcCCC-CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHH
Q 000463 709 -----TTAYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLAR 782 (1479)
Q Consensus 709 -----~iayv~Q~~~i~~~Tv~enI~fg~~-~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 782 (1479)
.++||||+|++|++||+|||.+|.+ .++++.+++++.++++++++.+|+|.+|.+||+|.+||||||||++|||
T Consensus 404 ~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiAR 483 (529)
T TIGR02868 404 DELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALAR 483 (529)
T ss_pred HHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHH
Confidence 6899999999999999999999875 5778889999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCC
Q 000463 783 AVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQV 829 (1479)
Q Consensus 783 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~ 829 (1479)
|++++|+|+|||||||+||+++++.|.+.+. ...+++|+|+|||++
T Consensus 484 all~~~~iliLDE~TSaLD~~te~~I~~~l~-~~~~~~TvIiItHrl 529 (529)
T TIGR02868 484 ALLADAPILLLDEPTEHLDAGTESELLEDLL-AALSGKTVVVITHHL 529 (529)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HhcCCCEEEEEecCC
Confidence 9999999999999999999999999987654 456789999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-64 Score=627.15 Aligned_cols=431 Identities=21% Similarity=0.345 Sum_probs=327.7
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--------------e
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------------T 709 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------~ 709 (1479)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 5899999999952 4699999999999999999999999999999999999999999999876 2
Q ss_pred EEEEeccCcCCC-CcHHHHHhcCCCCC--h-hhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHh
Q 000463 710 TAYVAQTSWIQN-GTIEENILFGLPMN--R-AKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVY 785 (1479)
Q Consensus 710 iayv~Q~~~i~~-~Tv~enI~fg~~~~--~-~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 785 (1479)
++|++|++.++. .|++||+.++.... . ...++.. ....+.++.+...+ ....+..+|||||||||+||||++
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~--~~~~~~~~LSgGq~qrv~laral~ 156 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN--YEAREQLEHLGVDI--DPDTPLKYLSIGQRQMVEIAKALA 156 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHH--HHHHHHHHHcCCCC--CcCCchhhCCHHHHHHHHHHHHHH
Confidence 799999987664 69999999864210 0 0011111 11223344443322 235677899999999999999999
Q ss_pred cCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhcCcchHH
Q 000463 786 QDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNSGMDFGA 864 (1479)
Q Consensus 786 ~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~~~~f~~ 864 (1479)
.+|+++||||||++||+.+.+.+++.+.+...+|+|+|++||+++++.. ||+|++|++|+++..++..+
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~---------- 226 (501)
T PRK11288 157 RNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMA---------- 226 (501)
T ss_pred hCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccc----------
Confidence 9999999999999999999999987666655568999999999999865 89999999999875321000
Q ss_pred HHHHhhhhhhhhhccccCCCCCCCCCCCCCccccccccccCCCcccccccccCCCchhhhHHHHhcCcchHHHHHHHHHH
Q 000463 865 LVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTE 944 (1479)
Q Consensus 865 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~y~~~ 944 (1479)
. . . .++ +...
T Consensus 227 ----------------~---------------------~----------~----------~~~-------------~~~~ 236 (501)
T PRK11288 227 ----------------Q---------------------V----------D----------RDQ-------------LVQA 236 (501)
T ss_pred ----------------c---------------------C----------C----------HHH-------------HHHH
Confidence 0 0 0 000 0000
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 945 AYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFS 1024 (1479)
Q Consensus 945 ~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~ 1024 (1479)
. .. .
T Consensus 237 ~------------------------------~~--~-------------------------------------------- 240 (501)
T PRK11288 237 M------------------------------VG--R-------------------------------------------- 240 (501)
T ss_pred h------------------------------cC--C--------------------------------------------
Confidence 0 00 0
Q ss_pred HHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000463 1025 QILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYR 1104 (1479)
Q Consensus 1025 ~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~ 1104 (1479)
+
T Consensus 241 ---------~---------------------------------------------------------------------- 241 (501)
T PRK11288 241 ---------E---------------------------------------------------------------------- 241 (501)
T ss_pred ---------C----------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHH
Q 000463 1105 GYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFT 1184 (1479)
Q Consensus 1105 ~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~ 1184 (1479)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK11288 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCC
Q 000463 1185 FCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPA 1264 (1479)
Q Consensus 1185 ~~~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~ 1264 (1479)
. ++. .+.++ . + +.
T Consensus 242 ---------------~------------------------------------~~~-----~~~~~------~--~---~~ 254 (501)
T PRK11288 242 ---------------I------------------------------------GDI-----YGYRP------R--P---LG 254 (501)
T ss_pred ---------------c------------------------------------ccc-----ccccc------c--C---CC
Confidence 0 000 00000 0 0 01
Q ss_pred CccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCCh-hhhhc
Q 000463 1265 HGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGL-HDLRS 1343 (1479)
Q Consensus 1265 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l-~~LR~ 1343 (1479)
...++++|++++ .+++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +..|+
T Consensus 255 ~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 328 (501)
T PRK11288 255 EVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRA 328 (501)
T ss_pred CcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhC
Confidence 125888999842 38999999999999999999999999999999999999999999999999875433 45678
Q ss_pred ceEEEcCccc---ccc-ccHhhhcCCCC--C-------CC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCC
Q 000463 1344 RFGIIPQEPV---LFE-GTVRSNIDPIG--Q-------YS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWS 1406 (1479)
Q Consensus 1344 ~i~iIpQdp~---LF~-gTIR~NLdp~~--~-------~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1406 (1479)
+++++||+|. +|. .|+.+|+.... . .. ++++.++++..++.+ +..++++ .+||
T Consensus 329 ~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~LS 398 (501)
T PRK11288 329 GIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT------PSREQLI----MNLS 398 (501)
T ss_pred CCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc------CCccCcc----ccCC
Confidence 9999999983 554 69999986311 0 01 234666777776621 1233333 3699
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1407 VGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1407 gGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||||||++|||||+.+|+||||||||++||..+.+.+.+.|++.. .+.|||+|||+++.+.. ||||++|++|+
T Consensus 399 gGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~ 473 (501)
T PRK11288 399 GGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGR 473 (501)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999998864 47899999999999976 99999999985
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-63 Score=624.00 Aligned_cols=469 Identities=18% Similarity=0.286 Sum_probs=328.5
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--eEEEEeccCcCC-C
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--TTAYVAQTSWIQ-N 721 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--~iayv~Q~~~i~-~ 721 (1479)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++ +
T Consensus 2 l~i~~ls~~~~---~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 2 LSTANITMQFG---AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEE 78 (530)
T ss_pred EEEEEEEEEeC---CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCC
Confidence 78999999995 34799999999999999999999999999999999999999999999986 699999997654 5
Q ss_pred CcHHHHHhcCCCCCh--------------------hhHHHHH----------HHhchHHHHHhcccCCccccccCCCccc
Q 000463 722 GTIEENILFGLPMNR--------------------AKYGEVV----------RVCCLEKDLEMMEYGDQTEIGERGINLS 771 (1479)
Q Consensus 722 ~Tv~enI~fg~~~~~--------------------~~~~~v~----------~~~~l~~dl~~l~~gd~t~ig~~g~~LS 771 (1479)
.|++||+.++..... ..+.+.. ......+-++.+...+. .......+||
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~~LS 157 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE-QHYGLMSEVA 157 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh-HhcCchhhcC
Confidence 699999987631000 0000000 00011222333322111 1124578999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEE-EEe
Q 000463 772 GGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMI-VQS 849 (1479)
Q Consensus 772 GGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i-~~~ 849 (1479)
|||||||+||||++.+|+++||||||++||+...+.+.+.+. ..|+|||+|||+++++.. ||+|++|++|++ ++.
T Consensus 158 gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~ 234 (530)
T PRK15064 158 PGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN---ERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYP 234 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH---hCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEec
Confidence 999999999999999999999999999999999998876543 248999999999999875 899999999999 478
Q ss_pred cChHHHHhcCcchHHHHHHhhhhhhhhhccccCCCCCCCCCCCCCccccccccccCCCcccccccccCCCchhhhHHHHh
Q 000463 850 GRYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGNSKLIKEEERE 929 (1479)
Q Consensus 850 g~~~~l~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~ 929 (1479)
|+++++++.... ........ .. + .+++.+.
T Consensus 235 g~~~~~~~~~~~-------~~~~~~~~-----------------------~~-------------------~-~~~~~~~ 264 (530)
T PRK15064 235 GNYDEYMTAATQ-------ARERLLAD-----------------------NA-------------------K-KKAQIAE 264 (530)
T ss_pred CCHHHHHHHHHH-------HHHHHHHH-----------------------HH-------------------H-HHHHHHH
Confidence 988876531000 00000000 00 0 0000000
Q ss_pred cCcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 000463 930 TGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAY 1009 (1479)
Q Consensus 930 ~g~v~~~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~ 1009 (1479)
...+..
T Consensus 265 --------~~~~~~------------------------------------------------------------------ 270 (530)
T PRK15064 265 --------LQSFVS------------------------------------------------------------------ 270 (530)
T ss_pred --------HHHHHH------------------------------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000463 1010 FVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPT 1089 (1479)
Q Consensus 1010 ~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1089 (1479)
T Consensus 271 -------------------------------------------------------------------------------- 270 (530)
T PRK15064 271 -------------------------------------------------------------------------------- 270 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhH
Q 000463 1090 IFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGS 1169 (1479)
Q Consensus 1090 ~~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~ 1169 (1479)
+... ++. ++ ...+
T Consensus 271 --------------------------~~~~--~~~---------------~~----------------~~~~-------- 283 (530)
T PRK15064 271 --------------------------RFSA--NAS---------------KA----------------KQAT-------- 283 (530)
T ss_pred --------------------------Hhhc--cch---------------hh----------------HHHH--------
Confidence 0000 000 00 0000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccch
Q 000463 1170 NEWLGFRLELLGSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEA 1249 (1479)
Q Consensus 1170 ~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~ 1249 (1479)
......++... ...+...
T Consensus 284 -------------------------------------------------------------~~~~~~~~~~~-~~~~~~~ 301 (530)
T PRK15064 284 -------------------------------------------------------------SRAKQIDKIKL-EEVKPSS 301 (530)
T ss_pred -------------------------------------------------------------HHHHHHhhccc-cccCCcc
Confidence 00000000000 0000000
Q ss_pred hccccCCCCCCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEc
Q 000463 1250 AWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIID 1329 (1479)
Q Consensus 1250 ~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~ID 1329 (1479)
........+...-+.+..++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++
T Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~ 379 (530)
T PRK15064 302 RQNPFIRFEQDKKLHRNALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWS 379 (530)
T ss_pred ccCceeeCCCCCCCCCceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 000000000000011236999999999964 359999999999999999999999999999999999999999999999
Q ss_pred CEecCCCChhhhhcceEEEcCccc--ccc-ccHhhhcCCCC--CCCHHHHHHHHHHcCch-HHHHhCcCCccccccCCCC
Q 000463 1330 GIDISLLGLHDLRSRFGIIPQEPV--LFE-GTVRSNIDPIG--QYSDEEIWKSLERCQLK-DVVAAKPDKLDSLVADSGD 1403 (1479)
Q Consensus 1330 G~dI~~i~l~~LR~~i~iIpQdp~--LF~-gTIR~NLdp~~--~~sd~eI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~ 1403 (1479)
| +++++|+||++. ++. .|+++|+..+. ...++++.++|+..++. +..... ..
T Consensus 380 ~-----------~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~ 437 (530)
T PRK15064 380 E-----------NANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKS-----------VK 437 (530)
T ss_pred C-----------ceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCc-----------cc
Confidence 7 357999999984 443 59999985332 23456788899999884 333222 24
Q ss_pred CCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1404 NWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1404 nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+||||||||++||||++++|+||||||||++||+.+...+.+.|++. ++|||+|||+++.+.. ||||++|++|+
T Consensus 438 ~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~ 512 (530)
T PRK15064 438 VLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDG 512 (530)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 68999999999999999999999999999999999999999999875 5699999999999987 99999999985
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-61 Score=605.79 Aligned_cols=520 Identities=19% Similarity=0.199 Sum_probs=411.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 325 CFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTL 404 (1479)
Q Consensus 325 ~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~riR~~L 404 (1479)
.+++.++...++.++..++..+.|++++.++|.+-.... ...-+.+++.+++..++..++.....+...+++.++...+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS-VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888889999999999999999996542221 1223344555666666777777777778889999999999
Q ss_pred HHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 000463 405 ITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQ--LHAVWLMPLQISVALI--LLYNCLGASVITTVVGIIG 480 (1479)
Q Consensus 405 ~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~~--~~~~w~~plqi~lal~--lL~~~lG~s~l~gl~~~il 480 (1479)
...+|+|.++++.. ..+...+.++.|++++.+.+.. +..+...++.++..++ .+...+++.+++++ ++
T Consensus 82 r~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~---~l 153 (544)
T TIGR01842 82 NQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGGA---VV 153 (544)
T ss_pred HHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HH
Confidence 99999999999863 2255678889999999987543 3333333433333222 22223333333222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 481 VMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMWS 560 (1479)
Q Consensus 481 ~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~~~ 560 (1479)
.+.+..+..++.++..++.++..+++.+.++|.++|+++||.|++|+.+.++..+..++..+...+.....+....+...
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (544)
T TIGR01842 154 LVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKY 233 (544)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344455677778888899999999999999999999999999999999998877776555554444333333222222
Q ss_pred HH--HHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccccccC
Q 000463 561 TP--VLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEG 638 (1479)
Q Consensus 561 ~p--~~v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~ 638 (1479)
.. ..+.++.++.+....+.+|++.+++++.++..+..|+..++..+..+.+++++.+||.++++.++..++.. +.
T Consensus 234 ~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~---~~ 310 (544)
T TIGR01842 234 FRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM---PL 310 (544)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC---CC
Confidence 22 12334567777777889999999999999999999999999999999999999999999997654332111 11
Q ss_pred CCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC----------
Q 000463 639 CDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG---------- 708 (1479)
Q Consensus 639 ~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g---------- 708 (1479)
...+..++++|++|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 311 ~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 311 PEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET 389 (544)
T ss_pred CCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHH
Confidence 1123469999999999643 35799999999999999999999999999999999999999999999988
Q ss_pred ---eEEEEeccCcCCCCcHHHHHhcCCC-CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHH
Q 000463 709 ---TTAYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAV 784 (1479)
Q Consensus 709 ---~iayv~Q~~~i~~~Tv~enI~fg~~-~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 784 (1479)
.++||||+|+++++|++|||.++.+ .+++...++++.+++++.++.+|.|.+|.+|++|.+||||||||++||||+
T Consensus 390 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARal 469 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARAL 469 (544)
T ss_pred HhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHH
Confidence 3899999999999999999986654 667777788888999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHh
Q 000463 785 YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 785 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
+++|+++|||||||+||+++++++.+.+.+...+|+|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 470 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 470 YGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred hcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999998765544346899999999999888899999999999999999988764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=623.38 Aligned_cols=428 Identities=21% Similarity=0.378 Sum_probs=324.6
Q ss_pred EeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe--------------EEEE
Q 000463 648 RDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT--------------TAYV 713 (1479)
Q Consensus 648 ~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--------------iayv 713 (1479)
+|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|+
T Consensus 2 ~nl~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 2 SNISKSFP---GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CceEEEeC---CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 67889985 357999999999999999999999999999999999999999999999872 7999
Q ss_pred eccCcCC-CCcHHHHHhcCCC-CChh--hHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCC
Q 000463 714 AQTSWIQ-NGTIEENILFGLP-MNRA--KYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCD 789 (1479)
Q Consensus 714 ~Q~~~i~-~~Tv~enI~fg~~-~~~~--~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 789 (1479)
+|++.++ +.|++||+.++.. .... ..++..+ ...+-++.+.. ......+..+|||||||||+||||++.+|+
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l--~~~~~~~~~~LSgGq~qrv~lA~al~~~p~ 154 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR--DTKAIFDELDI--DIDPRAKVATLSVSQMQMIEIAKAFSYNAK 154 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHH--HHHHHHHHcCC--CCCccCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 9998654 5799999998642 1100 0011111 12223333322 223456788999999999999999999999
Q ss_pred EEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhcCcchHHHHHH
Q 000463 790 IYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNSGMDFGALVAA 868 (1479)
Q Consensus 790 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~~~~f~~l~~~ 868 (1479)
++||||||++||+.+.+.+++.+.+...+|+|+|++||+++++.. ||++++|++|++++.|+.+++..
T Consensus 155 lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~----------- 223 (491)
T PRK10982 155 IVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTM----------- 223 (491)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCH-----------
Confidence 999999999999999999987666555568999999999999865 89999999999987665322100
Q ss_pred hhhhhhhhhccccCCCCCCCCCCCCCccccccccccCCCcccccccccCCCchhhhHHHHhcCcchHHHHHHHHHHhhhh
Q 000463 869 HETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCTEAYGW 948 (1479)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~y~~~~~g~ 948 (1479)
++ .....
T Consensus 224 ---------------------------------------------------------~~-------------~~~~~--- 230 (491)
T PRK10982 224 ---------------------------------------------------------DK-------------IIAMM--- 230 (491)
T ss_pred ---------------------------------------------------------HH-------------HHHHH---
Confidence 00 00000
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 949 WGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILR 1028 (1479)
Q Consensus 949 ~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~ 1028 (1479)
T Consensus 231 -------------------------------------------------------------------------------- 230 (491)
T PRK10982 231 -------------------------------------------------------------------------------- 230 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000463 1029 SILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYL 1108 (1479)
Q Consensus 1029 ~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~y~ 1108 (1479)
T Consensus 231 -------------------------------------------------------------------------------- 230 (491)
T PRK10982 231 -------------------------------------------------------------------------------- 230 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 000463 1109 STSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLA 1188 (1479)
Q Consensus 1109 ~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~ 1188 (1479)
++
T Consensus 231 ---------------------------------~~--------------------------------------------- 232 (491)
T PRK10982 231 ---------------------------------VG--------------------------------------------- 232 (491)
T ss_pred ---------------------------------hC---------------------------------------------
Confidence 00
Q ss_pred HHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCccE
Q 000463 1189 TLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNV 1268 (1479)
Q Consensus 1189 ~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I 1268 (1479)
. . + .+ ..+.+. .+ +....|
T Consensus 233 --------~---~-------------------------------~---~~-----~~~~~~--------~~---~~~~~i 251 (491)
T PRK10982 233 --------R---S-------------------------------L---TQ-----RFPDKE--------NK---PGEVIL 251 (491)
T ss_pred --------C---C-------------------------------c---cc-----cccccc--------CC---CCCcEE
Confidence 0 0 0 00 000000 00 111258
Q ss_pred EEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhh-hhcceEE
Q 000463 1269 DLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD-LRSRFGI 1347 (1479)
Q Consensus 1269 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i~i 1347 (1479)
+++|++++| +.+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+... +|+.+++
T Consensus 252 ~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~ 327 (491)
T PRK10982 252 EVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFAL 327 (491)
T ss_pred EEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEE
Confidence 999999985 24899999999999999999999999999999999999999999999999998776544 5778999
Q ss_pred EcCccc---ccc-ccHhhh-----cCCC----CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHH
Q 000463 1348 IPQEPV---LFE-GTVRSN-----IDPI----GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQR 1410 (1479)
Q Consensus 1348 IpQdp~---LF~-gTIR~N-----Ldp~----~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1410 (1479)
+||++. +|. .|+++| +... +..+ ++++.++++..++.+ +.+|.++ .+||||||
T Consensus 328 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~LSgGq~ 397 (491)
T PRK10982 328 VTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT------PGHRTQI----GSLSGGNQ 397 (491)
T ss_pred cCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccC------CCccccc----ccCCcHHH
Confidence 999963 565 377666 3211 1112 223455555555521 1233333 46999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1411 QLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1411 Qrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||++||||++++|+||||||||++||+.+.+.+.+.|++.. ++.|||+|||+++.+.. ||||++|++|+
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~ 468 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGL 468 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCE
Confidence 99999999999999999999999999999999999998753 57899999999999976 99999999985
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=624.59 Aligned_cols=434 Identities=21% Similarity=0.299 Sum_probs=328.2
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-------------E
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------T 710 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------i 710 (1479)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 4889999999953 46999999999999999999999999999999999999999999998762 6
Q ss_pred EEEeccCcC---------CCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHH
Q 000463 711 AYVAQTSWI---------QNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLA 781 (1479)
Q Consensus 711 ayv~Q~~~i---------~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 781 (1479)
+|++|++-. +..|++||+.++.. +.++.++. ++.+... .....+..+|||||||||+||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------l~~~~l~--~~~~~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQL---------AQQFGIT--ALLDRRFKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHH---------HHHcCCH--hhhhCCcccCCHHHHHHHHHH
Confidence 899998642 14689998876421 11122222 2232221 123467789999999999999
Q ss_pred HHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhcCc
Q 000463 782 RAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNSGM 860 (1479)
Q Consensus 782 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~~~ 860 (1479)
||++.+|+++||||||++||+...+.+.+.+.+...+|+|+|++||+++++.. ||+|++|++|+++..|+++++.+..
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~- 226 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA- 226 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcch-
Confidence 99999999999999999999999999988766655568999999999999865 8999999999999888766543210
Q ss_pred chHHHHHHhhhhhhhhhccccCCCCCCCCCCCCCccccccccccCCCcccccccccCCCchhhhHHHHhcCcchHHHHHH
Q 000463 861 DFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKI 940 (1479)
Q Consensus 861 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~ 940 (1479)
.+. .. . +.
T Consensus 227 ----~~~----------------------------------~~-------~-------------------~~-------- 234 (490)
T PRK10938 227 ----LVA----------------------------------QL-------A-------------------HS-------- 234 (490)
T ss_pred ----hhh----------------------------------hh-------h-------------------hh--------
Confidence 000 00 0 00
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 941 YCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQ 1020 (1479)
Q Consensus 941 y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~ 1020 (1479)
... .. ..
T Consensus 235 --~~~-------------------------------~~-~~--------------------------------------- 241 (490)
T PRK10938 235 --EQL-------------------------------EG-VQ--------------------------------------- 241 (490)
T ss_pred --hcc-------------------------------Cc-cc---------------------------------------
Confidence 000 00 00
Q ss_pred HHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000463 1021 IFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWAN 1100 (1479)
Q Consensus 1021 ~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~ 1100 (1479)
T Consensus 242 -------------------------------------------------------------------------------- 241 (490)
T PRK10938 242 -------------------------------------------------------------------------------- 241 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHH
Q 000463 1101 YWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELL 1180 (1479)
Q Consensus 1101 ~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l 1180 (1479)
.|
T Consensus 242 ----------------------~~-------------------------------------------------------- 243 (490)
T PRK10938 242 ----------------------LP-------------------------------------------------------- 243 (490)
T ss_pred ----------------------cC--------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCC
Q 000463 1181 GSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPP 1260 (1479)
Q Consensus 1181 ~~~~~~~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~ 1260 (1479)
. ..+... ... .+
T Consensus 244 ----------------~------------------------------------------------~~~~~~--~~~-~~- 255 (490)
T PRK10938 244 ----------------E------------------------------------------------PDEPSA--RHA-LP- 255 (490)
T ss_pred ----------------c------------------------------------------------cccccc--ccc-cC-
Confidence 0 000000 000 00
Q ss_pred CCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC-CccEEEEcCEecCC-CCh
Q 000463 1261 NWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP-SGGRIIIDGIDISL-LGL 1338 (1479)
Q Consensus 1261 ~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-~~G~I~IDG~dI~~-i~l 1338 (1479)
+....++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.. ...
T Consensus 256 --~~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 256 --ANEPRIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETI 331 (490)
T ss_pred --CCCceEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCH
Confidence 01125999999999964 3499999999999999999999999999999999998876 69999999987632 233
Q ss_pred hhhhcceEEEcCcccccc---ccHhhhcCC--C------CCCC---HHHHHHHHHHcCchH-HHHhCcCCccccccCCCC
Q 000463 1339 HDLRSRFGIIPQEPVLFE---GTVRSNIDP--I------GQYS---DEEIWKSLERCQLKD-VVAAKPDKLDSLVADSGD 1403 (1479)
Q Consensus 1339 ~~LR~~i~iIpQdp~LF~---gTIR~NLdp--~------~~~s---d~eI~~aL~~~~L~~-~i~~lp~gLdt~v~e~G~ 1403 (1479)
...|++++++||++.++. .|+++++.. . .... ++++.++++.+++.+ ... .++ .
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~----~ 400 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTAD-------APF----H 400 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhcc-------Cch----h
Confidence 456889999999987642 477777642 1 1111 245778888888764 322 222 3
Q ss_pred CCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC-C-cEEEEEccChhhhhh--cCEEEEEeCCC
Q 000463 1404 NWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA-A-CTIISIAHRIPTVMD--CDRVIVVDAGL 1479 (1479)
Q Consensus 1404 nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~-~-~TvI~IAHRl~ti~~--~DrIlVL~~G~ 1479 (1479)
.||||||||++|||||+++|+||||||||++||+++.+.+.+.|++..+ + +|||+|||+++.+.. ||+|++|++|+
T Consensus 401 ~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~ 480 (490)
T PRK10938 401 SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGD 480 (490)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCc
Confidence 6899999999999999999999999999999999999999999998753 3 479999999999975 79999999996
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=557.73 Aligned_cols=529 Identities=22% Similarity=0.270 Sum_probs=417.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 332 FTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRK 411 (1479)
Q Consensus 332 ~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~riR~~L~~~Iy~K 411 (1479)
..+++.++..++...+-.++-..++-+-..+. ...-+.++++++++.++.+++.---....++.+.++|..|...+++|
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~-~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQL-FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777777777766664433321 22234455566666777777776666777899999999999999999
Q ss_pred HhcCChhhhccCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 412 GLRLSCSARQAHGVGQIVNYMAVDAQQLSDMM----LQLHAVWLMPLQISVALILLYNCLGASVITTVVGIIGVMIFVVM 487 (1479)
Q Consensus 412 ~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~----~~~~~~w~~plqi~lal~lL~~~lG~s~l~gl~~~il~~~~~~~ 487 (1479)
..+++...-+...+|++.++++.-++.+..++ ..+...-..|+-+.++++++.+.-|.-.+..+..+.+.| +.
T Consensus 83 l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfM---il 159 (559)
T COG4988 83 LAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFM---IL 159 (559)
T ss_pred HHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HH
Confidence 99999888888899999999999999987765 344455567777777777776554544443333333333 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 488 GTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRI----LSFRESEFGWLTKFMYSISGNIIVMWSTPV 563 (1479)
Q Consensus 488 ~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I----~~~R~~El~~l~k~~~~~a~~~~~~~~~p~ 563 (1479)
+++..++..+++++.-..=-...-+-|+|+.++|.|+-.+...++| ++.|+.-|+.+|-.....++.-++. +..+
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa-~lsi 238 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFA-YLSI 238 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 4555555566666655555556678899999999999766555555 7799999999887665555444433 2333
Q ss_pred HHHHHHHHHHHHhc-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccc-ccCCCC
Q 000463 564 LISTLTFATALLFG-VPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVER-VEGCDD 641 (1479)
Q Consensus 564 ~v~~~tF~~~~l~~-~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~-~~~~~~ 641 (1479)
.+..+.++.. +.+ ++++....|.+|-+---.-.|++.+...+..-.++..+.+++..|++.++......+. ......
T Consensus 239 AlvAv~~g~~-ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~ 317 (559)
T COG4988 239 ALVAVYIGFR-LLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEP 317 (559)
T ss_pred HHHHHHHHHH-HHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCC
Confidence 3333444443 455 5899999999998888888999999999999999999999999999988764433221 111112
Q ss_pred CccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------
Q 000463 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------- 708 (1479)
Q Consensus 642 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------- 708 (1479)
...++.+|++|.|++. +++++|+||++++|+++||||+||||||||+++|+|+.+|++|+|.++|
T Consensus 318 ~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k 395 (559)
T COG4988 318 PIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK 395 (559)
T ss_pred CceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHh
Confidence 3445566999999753 3899999999999999999999999999999999999999999999998
Q ss_pred eEEEEeccCcCCCCcHHHHHhcCCC-CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcC
Q 000463 709 TTAYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD 787 (1479)
Q Consensus 709 ~iayv~Q~~~i~~~Tv~enI~fg~~-~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 787 (1479)
+++||+|+|.|+.+|+||||.++.+ -+++...++++..++.+.++. |.|.+|.+||+|.+|||||+|||+||||++++
T Consensus 396 ~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~ 474 (559)
T COG4988 396 QISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSP 474 (559)
T ss_pred HeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCC
Confidence 3899999999999999999999988 456677788999999988888 99999999999999999999999999999999
Q ss_pred CCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcCcchHHHHH
Q 000463 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVA 867 (1479)
Q Consensus 788 ~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~f~~l~~ 867 (1479)
+++||||||||+||+++++.|.+. +..+.++||+|+|||+++.+..+|+|++|++|+++++|+++++.++++.|.+++.
T Consensus 475 ~~l~llDEpTA~LD~etE~~i~~~-l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~ 553 (559)
T COG4988 475 ASLLLLDEPTAHLDAETEQIILQA-LQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLK 553 (559)
T ss_pred CCEEEecCCccCCCHhHHHHHHHH-HHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHH
Confidence 999999999999999999888764 4455577999999999999999999999999999999999999999999999987
Q ss_pred Hhh
Q 000463 868 AHE 870 (1479)
Q Consensus 868 ~~~ 870 (1479)
+++
T Consensus 554 ~q~ 556 (559)
T COG4988 554 QQE 556 (559)
T ss_pred HHh
Confidence 643
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-59 Score=596.78 Aligned_cols=534 Identities=24% Similarity=0.317 Sum_probs=413.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 326 FWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLI 405 (1479)
Q Consensus 326 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~riR~~L~ 405 (1479)
++ .+....++.++..++....|.++..+++.+.. + ......+...+++..++..++.....+....++.++...+.
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA-D--LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 78888888899999999999999999987761 1 11112222223333334444444445555566688888888
Q ss_pred HHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000463 406 TSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWL-MPLQISVALILLYNCLGAS-VITTVVGIIGVMI 483 (1479)
Q Consensus 406 ~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~~~~~~w~-~plqi~lal~lL~~~lG~s-~l~gl~~~il~~~ 483 (1479)
..+|+|.++++....+++..|++++.++.|++.+.+.+........ .++-++..+++++ .++|. +++.++..+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~~~~~~~~~~~ 167 (567)
T COG1132 89 RDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLF-SLSWRLALILLLILPLLAL 167 (567)
T ss_pred HHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHH
Confidence 9999999999998888889999999999999999998876522222 2333333333332 33332 2222222233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000463 484 FVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNI-IVMWSTP 562 (1479)
Q Consensus 484 ~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~-~~~~~~p 562 (1479)
+..++.++.++...+..+..++..+.+.|.++|++++|.|+.|+...++..+..++..+.-.+.....+... .......
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (567)
T COG1132 168 VLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSS 247 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556788888888889999999999999999999999997766655544443333222222222221 1111111
Q ss_pred -HHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccccccCCCC
Q 000463 563 -VLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDD 641 (1479)
Q Consensus 563 -~~v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~ 641 (1479)
..+.++..+.+....+.++.+.+.+.+.++..+..|+..+...+..+.++..|.+|+.++++.++...+.... ....
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~~~ 325 (567)
T COG1132 248 LGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LKDT 325 (567)
T ss_pred HHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CCCC
Confidence 1223334555555667799999999999999999999999999999999999999999999985532211111 1123
Q ss_pred CccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------
Q 000463 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------- 708 (1479)
Q Consensus 642 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------- 708 (1479)
+..|+++|++|+|++ ++++|+|+||++++||.+|||||+|||||||++.|+|+++|++|+|.++|
T Consensus 326 ~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~ 403 (567)
T COG1132 326 IGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRK 403 (567)
T ss_pred CCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHH
Confidence 356999999999974 45899999999999999999999999999999999999999999999988
Q ss_pred eEEEEeccCcCCCCcHHHHHhcCCC-CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcC
Q 000463 709 TTAYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD 787 (1479)
Q Consensus 709 ~iayv~Q~~~i~~~Tv~enI~fg~~-~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 787 (1479)
+++||||+|++|++||+|||.+|.+ .+++...++++.+++.+.++.+|+|.+|.+||+|.+||||||||++||||+++|
T Consensus 404 ~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~ 483 (567)
T COG1132 404 RIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN 483 (567)
T ss_pred hccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 3899999999999999999999988 466677778888888899999999999999999999999999999999999999
Q ss_pred CCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcCcchHHHHH
Q 000463 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVA 867 (1479)
Q Consensus 788 ~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~f~~l~~ 867 (1479)
|+|++||||||+||+++.+.|.+.+. ...++||+|+|+|+++.+..||+|+||++|+|++.|+++|+++.++.|.++..
T Consensus 484 ~~ILILDEaTSalD~~tE~~I~~~l~-~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~ 562 (567)
T COG1132 484 PPILILDEATSALDTETEALIQDALK-KLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQ 562 (567)
T ss_pred CCEEEEeccccccCHHhHHHHHHHHH-HHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHH
Confidence 99999999999999999999987665 44478999999999999999999999999999999999999999999998876
Q ss_pred Hh
Q 000463 868 AH 869 (1479)
Q Consensus 868 ~~ 869 (1479)
.+
T Consensus 563 ~~ 564 (567)
T COG1132 563 AQ 564 (567)
T ss_pred Hh
Confidence 54
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-59 Score=593.43 Aligned_cols=538 Identities=20% Similarity=0.249 Sum_probs=412.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 322 LLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIR 401 (1479)
Q Consensus 322 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~riR 401 (1479)
.++.+++.++...++.++..++..+.|++++.++|.+..++. . ..++..+++..++..+......+...+++.++|
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-V---LPTLALWAGFGVFNTIAYVLVAREADRLAHGRR 88 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888889999999999999999999997654321 1 111111122223333333333455668888899
Q ss_pred HHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 402 CTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMML-QLHAVWLMPLQISVALILLYNCLGASVITTVVGIIG 480 (1479)
Q Consensus 402 ~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~lal~lL~~~lG~s~l~gl~~~il 480 (1479)
..+...+|+|.++++....+++++|++++.++.|++.+.+++. .+..+....+.+++++++++..-..-+++.++++++
T Consensus 89 ~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~ 168 (585)
T TIGR01192 89 ATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGIL 168 (585)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988889999999999999999987654 333334444444444333332111222222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 000463 481 VMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRES----EFGWLTKFMYSISGNII 556 (1479)
Q Consensus 481 ~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~----El~~l~k~~~~~a~~~~ 556 (1479)
...+...+.++.++.+++..+..++..+.+.|.++|+++||.++.|+.+.++..+.-++ +.+..+..........+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (585)
T TIGR01192 169 YILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRM 248 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556677777788888888889999999999999999999999887777654443 22222222222222211
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccccc
Q 000463 557 VMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERV 636 (1479)
Q Consensus 557 ~~~~~p~~v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~ 636 (1479)
+.... .+.++.++.+....+.++.+.+++.+.++..+..|+..+...+..+.+++++++|+.++++.++..++.....
T Consensus 249 ~~~~~--~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~ 326 (585)
T TIGR01192 249 ASTIS--MMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAP 326 (585)
T ss_pred HHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCC
Confidence 11111 2334456777777889999999999999999999999999999999999999999999997653221111100
Q ss_pred cCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--------
Q 000463 637 EGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------- 708 (1479)
Q Consensus 637 ~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------- 708 (1479)
+.......++++|++|+|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 327 ~~~~~~~~i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~ 404 (585)
T TIGR01192 327 ELPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTR 404 (585)
T ss_pred CCCCCCCeEEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCH
Confidence 11112346999999999964 24689999999999999999999999999999999999999999999987
Q ss_pred -----eEEEEeccCcCCCCcHHHHHhcCCC-CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHH
Q 000463 709 -----TTAYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLAR 782 (1479)
Q Consensus 709 -----~iayv~Q~~~i~~~Tv~enI~fg~~-~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 782 (1479)
.++||||+|+++++|++|||.++.+ .+++...++++.+++.+.+..+|.|.+|.+|++|.+||||||||++|||
T Consensus 405 ~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lAR 484 (585)
T TIGR01192 405 ESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIAR 484 (585)
T ss_pred HHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHH
Confidence 3799999999999999999999865 3455566677777888889999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcCcch
Q 000463 783 AVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDF 862 (1479)
Q Consensus 783 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~f 862 (1479)
|++++|+++|||||||+||+++++.+.+.+ ....+++|+|+|||+++.++.||+|++|++|++++.|+++++.++++.|
T Consensus 485 all~~p~ililDEpts~LD~~~~~~i~~~l-~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y 563 (585)
T TIGR01192 485 AILKNAPILVLDEATSALDVETEARVKNAI-DALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRF 563 (585)
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHH-HHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChH
Confidence 999999999999999999999999997655 4445799999999999999999999999999999999999999988888
Q ss_pred HHHHHH
Q 000463 863 GALVAA 868 (1479)
Q Consensus 863 ~~l~~~ 868 (1479)
.++...
T Consensus 564 ~~l~~~ 569 (585)
T TIGR01192 564 YKLLRR 569 (585)
T ss_pred HHHHHh
Confidence 887654
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-61 Score=613.36 Aligned_cols=467 Identities=21% Similarity=0.287 Sum_probs=325.8
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--eEEEEeccCcCC
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--TTAYVAQTSWIQ 720 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--~iayv~Q~~~i~ 720 (1479)
..++++|++++|++ ++++|+|+||+|++|++++|+|+||||||||+++|+|+.+|++|+|.+++ .++|++|+|+++
T Consensus 3 ~~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~ 80 (552)
T TIGR03719 3 YIYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLD 80 (552)
T ss_pred EEEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCC
Confidence 36899999999952 34799999999999999999999999999999999999999999999875 699999999876
Q ss_pred -CCcHHHHHhcCCCC------------------Ch---------hhHHHHHHHhch-------HHHHHhcccCCcccccc
Q 000463 721 -NGTIEENILFGLPM------------------NR---------AKYGEVVRVCCL-------EKDLEMMEYGDQTEIGE 765 (1479)
Q Consensus 721 -~~Tv~enI~fg~~~------------------~~---------~~~~~v~~~~~l-------~~dl~~l~~gd~t~ig~ 765 (1479)
+.|++|||.++... +. .++.+.++.++. .+-++.+... ....
T Consensus 81 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~ 157 (552)
T TIGR03719 81 PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP---PWDA 157 (552)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC---cccC
Confidence 56999999886321 00 011112222221 1112222221 1356
Q ss_pred CCCccchHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCC
Q 000463 766 RGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREG 844 (1479)
Q Consensus 766 ~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G 844 (1479)
+..+|||||||||+||||++.+|+++||||||++||+++.+.+.+.+.+ . ++|+|+|||+++++.. ||++++|++|
T Consensus 158 ~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~-~--~~tvIiisHd~~~~~~~~d~v~~l~~g 234 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE-Y--PGTVVAVTHDRYFLDNVAGWILELDRG 234 (552)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHh-C--CCeEEEEeCCHHHHHhhcCeEEEEECC
Confidence 7789999999999999999999999999999999999999988765433 2 3699999999999876 8999999999
Q ss_pred EEE-EecChHHHHhcCcchHHHHHHhhhhhhhhhccccCCCCCCCCCCCCCccccccccccCCCcccccccccCCCchhh
Q 000463 845 MIV-QSGRYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGNSKLI 923 (1479)
Q Consensus 845 ~i~-~~g~~~~l~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 923 (1479)
+++ ..|+++++.+... ...+.. .
T Consensus 235 ~i~~~~g~~~~~~~~~~----------~~~~~~----------------------------------------------~ 258 (552)
T TIGR03719 235 RGIPWEGNYSSWLEQKE----------KRLEQE----------------------------------------------E 258 (552)
T ss_pred EEEEecCCHHHHHHHHH----------HHHHHH----------------------------------------------H
Confidence 975 7788877653100 000000 0
Q ss_pred hHHHHhcCcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHHH
Q 000463 924 KEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVI 1003 (1479)
Q Consensus 924 ~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~ 1003 (1479)
.+.++ +...+....
T Consensus 259 ~~~~~---------~~~~~~~~~--------------------------------------------------------- 272 (552)
T TIGR03719 259 KEESA---------RQKALKREL--------------------------------------------------------- 272 (552)
T ss_pred HHHHH---------HHHHHHHHH---------------------------------------------------------
Confidence 00000 000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000463 1004 LVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITC 1083 (1479)
Q Consensus 1004 ~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~ 1083 (1479)
T Consensus 273 -------------------------------------------------------------------------------- 272 (552)
T TIGR03719 273 -------------------------------------------------------------------------------- 272 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhH
Q 000463 1084 QYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMD 1163 (1479)
Q Consensus 1084 ~~~~~~~~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~ 1163 (1479)
....+ .+.. .+ + +.
T Consensus 273 ----------------------------~~~~~------~~~~---~~---------~---------~~----------- 286 (552)
T TIGR03719 273 ----------------------------EWVRS------SPKA---RQ---------A---------KS----------- 286 (552)
T ss_pred ----------------------------HHHHh------hhhh---HH---------H---------HH-----------
Confidence 00000 0000 00 0 00
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 000463 1164 FHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFT 1243 (1479)
Q Consensus 1164 ~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~ 1243 (1479)
+......++..+.
T Consensus 287 ------------------------------------------------------------------~~~~~~~~~~~~~- 299 (552)
T TIGR03719 287 ------------------------------------------------------------------KARLARYEELLSQ- 299 (552)
T ss_pred ------------------------------------------------------------------HHHHHHHHhhhhh-
Confidence 0000000111110
Q ss_pred cCccchhccccCCCCCCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCc
Q 000463 1244 EIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSG 1323 (1479)
Q Consensus 1244 ~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~ 1323 (1479)
.++..+.......+...-+.+..++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+|++
T Consensus 300 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~ 376 (552)
T TIGR03719 300 -EFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDS 376 (552)
T ss_pred -cccccCCCceeecCCCCCCCCeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC
Confidence 00000000000000000011235999999999964 359999999999999999999999999999999999999999
Q ss_pred cEEEEcCEecCCCChhhhhcceEEEcCccc-ccc-ccHhhhcCCCC---CC--CHHHHHHHHHHcCchHHHHhCcCCccc
Q 000463 1324 GRIIIDGIDISLLGLHDLRSRFGIIPQEPV-LFE-GTVRSNIDPIG---QY--SDEEIWKSLERCQLKDVVAAKPDKLDS 1396 (1479)
Q Consensus 1324 G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~-LF~-gTIR~NLdp~~---~~--sd~eI~~aL~~~~L~~~i~~lp~gLdt 1396 (1479)
|+|.+++ + .+|+++||++. ++. -|+++|+.... .. .+.+..++++..++.+.. .+.
T Consensus 377 G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~ 439 (552)
T TIGR03719 377 GTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD------QQK 439 (552)
T ss_pred eEEEECC-c----------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH------hcC
Confidence 9999964 2 16999999973 664 49999996321 11 134456677777764321 122
Q ss_pred cccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEE
Q 000463 1397 LVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVV 1475 (1479)
Q Consensus 1397 ~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL 1475 (1479)
++ ..||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++. . .|||+|||+++.+.. ||||++|
T Consensus 440 ~~----~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l 513 (552)
T TIGR03719 440 KV----GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHILAF 513 (552)
T ss_pred ch----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEE
Confidence 22 369999999999999999999999999999999999999999999986 3 589999999999987 9999999
Q ss_pred eCC
Q 000463 1476 DAG 1478 (1479)
Q Consensus 1476 ~~G 1478 (1479)
++|
T Consensus 514 ~~~ 516 (552)
T TIGR03719 514 EGD 516 (552)
T ss_pred ECC
Confidence 864
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-61 Score=610.45 Aligned_cols=466 Identities=21% Similarity=0.289 Sum_probs=325.2
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--eEEEEeccCcCC
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--TTAYVAQTSWIQ 720 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--~iayv~Q~~~i~ 720 (1479)
..|+++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++||+|+|.++
T Consensus 5 ~~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~ 82 (556)
T PRK11819 5 YIYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLD 82 (556)
T ss_pred EEEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCC
Confidence 36899999999952 35799999999999999999999999999999999999999999999864 699999999876
Q ss_pred C-CcHHHHHhcCCC-CCh--hh---------------------HHHHHHH----------hchHHHHHhcccCCcccccc
Q 000463 721 N-GTIEENILFGLP-MNR--AK---------------------YGEVVRV----------CCLEKDLEMMEYGDQTEIGE 765 (1479)
Q Consensus 721 ~-~Tv~enI~fg~~-~~~--~~---------------------~~~v~~~----------~~l~~dl~~l~~gd~t~ig~ 765 (1479)
+ .|++||+.++.. +.. .. +.+..+. ....+.++.+... ....
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---~~~~ 159 (556)
T PRK11819 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP---PWDA 159 (556)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC---cccC
Confidence 4 599999988631 000 00 0000000 0111222333221 2356
Q ss_pred CCCccchHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCC
Q 000463 766 RGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREG 844 (1479)
Q Consensus 766 ~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G 844 (1479)
+..+|||||||||+||||++.+|+++|||||||+||+.+.+.+.+.+. .. +.|+|+|||+++++.. ||+|++|++|
T Consensus 160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~-~~--~~tviiisHd~~~~~~~~d~i~~l~~g 236 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLH-DY--PGTVVAVTHDRYFLDNVAGWILELDRG 236 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHH-hC--CCeEEEEeCCHHHHHhhcCeEEEEeCC
Confidence 778999999999999999999999999999999999999998876443 33 3599999999999876 8999999999
Q ss_pred EEE-EecChHHHHhcCcchHHHHHHhhhhhhhhhccccCCCCCCCCCCCCCccccccccccCCCcccccccccCCCchhh
Q 000463 845 MIV-QSGRYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGNSKLI 923 (1479)
Q Consensus 845 ~i~-~~g~~~~l~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 923 (1479)
+++ +.|+++++.+... ...+.. .
T Consensus 237 ~i~~~~g~~~~~~~~~~----------~~~~~~----------------------------------------------~ 260 (556)
T PRK11819 237 RGIPWEGNYSSWLEQKA----------KRLAQE----------------------------------------------E 260 (556)
T ss_pred EEEEecCCHHHHHHHHH----------HHHHHH----------------------------------------------H
Confidence 986 7788877643100 000000 0
Q ss_pred hHHHHhcCcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHHH
Q 000463 924 KEEERETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVI 1003 (1479)
Q Consensus 924 ~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~ 1003 (1479)
.+.++.. ..++...
T Consensus 261 ~~~~~~~---------~~~~~~~--------------------------------------------------------- 274 (556)
T PRK11819 261 KQEAARQ---------KALKREL--------------------------------------------------------- 274 (556)
T ss_pred HHHHHHH---------HHHHHHH---------------------------------------------------------
Confidence 0000000 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000463 1004 LVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITC 1083 (1479)
Q Consensus 1004 ~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~ 1083 (1479)
T Consensus 275 -------------------------------------------------------------------------------- 274 (556)
T PRK11819 275 -------------------------------------------------------------------------------- 274 (556)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhH
Q 000463 1084 QYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMD 1163 (1479)
Q Consensus 1084 ~~~~~~~~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~ 1163 (1479)
+..++ ++.. + .. +
T Consensus 275 ----------------------------~~~~~------~~~~-------------~----~~----~------------ 287 (556)
T PRK11819 275 ----------------------------EWVRQ------SPKA-------------R----QA----K------------ 287 (556)
T ss_pred ----------------------------HHHHH------hhhh-------------h----HH----H------------
Confidence 00000 0000 0 00 0
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 000463 1164 FHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFT 1243 (1479)
Q Consensus 1164 ~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~ 1243 (1479)
.+......+|..+.
T Consensus 288 -----------------------------------------------------------------~~~~~~~~~~~~~~- 301 (556)
T PRK11819 288 -----------------------------------------------------------------SKARLARYEELLSE- 301 (556)
T ss_pred -----------------------------------------------------------------HHHHHHHHHHhhcc-
Confidence 00000000111110
Q ss_pred cCccchhccccCCCCCCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCc
Q 000463 1244 EIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSG 1323 (1479)
Q Consensus 1244 ~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~ 1323 (1479)
.+.+.+.......++...+...-++++|++++|.. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+|++
T Consensus 302 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~ 378 (556)
T PRK11819 302 -EYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDS 378 (556)
T ss_pred -cccccCCCceeecCCCCCCCCeEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 00000000000001111112335999999999964 359999999999999999999999999999999999999999
Q ss_pred cEEEEcCEecCCCChhhhhcceEEEcCcc-ccccc-cHhhhcCCCC---C--CCHHHHHHHHHHcCchHHHHhCcCCccc
Q 000463 1324 GRIIIDGIDISLLGLHDLRSRFGIIPQEP-VLFEG-TVRSNIDPIG---Q--YSDEEIWKSLERCQLKDVVAAKPDKLDS 1396 (1479)
Q Consensus 1324 G~I~IDG~dI~~i~l~~LR~~i~iIpQdp-~LF~g-TIR~NLdp~~---~--~sd~eI~~aL~~~~L~~~i~~lp~gLdt 1396 (1479)
|+|.+++ + .+|+|+||++ .++.. |+++|+.... . ..+++..++++..++.+.. .+.
T Consensus 379 G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~ 441 (556)
T PRK11819 379 GTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGD------QQK 441 (556)
T ss_pred eEEEECC-c----------eEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhH------hcC
Confidence 9999964 2 1699999997 56654 9999996321 1 1234556778877774311 122
Q ss_pred cccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEE
Q 000463 1397 LVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVV 1475 (1479)
Q Consensus 1397 ~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL 1475 (1479)
.+ ..||||||||++||||++.+|++|||||||++||+.+...+.+.|++. . .|||+|||+++.+.. ||||++|
T Consensus 442 ~~----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l 515 (556)
T PRK11819 442 KV----GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAF 515 (556)
T ss_pred ch----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEE
Confidence 22 369999999999999999999999999999999999999999999885 3 489999999999887 9999999
Q ss_pred eC
Q 000463 1476 DA 1477 (1479)
Q Consensus 1476 ~~ 1477 (1479)
++
T Consensus 516 ~~ 517 (556)
T PRK11819 516 EG 517 (556)
T ss_pred EC
Confidence 86
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-60 Score=600.68 Aligned_cols=464 Identities=17% Similarity=0.195 Sum_probs=352.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHH
Q 000463 995 STAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYIT 1074 (1479)
Q Consensus 995 ~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~ 1074 (1479)
++.++..++.+++.++....+.+...+++.++++++++.|++||+++++|++++|+++|++.+...+. .+..++...+.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~ 134 (547)
T PRK10522 56 GLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIIL 134 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHH
Confidence 33344455667788888889999999999999999999999999999999999999999999987654 45666777778
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcH---HHHHHH
Q 000463 1075 LLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQ---TTFYQE 1151 (1479)
Q Consensus 1075 ~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~---~~f~~~ 1151 (1479)
+++.+++++.++|.+.++++..+++.+.+..+..+..+...+......+...+++.|.++|+.+++ ++.+ +.+.++
T Consensus 135 ~i~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~ 213 (547)
T PRK10522 135 TLGSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENE 213 (547)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHH
Confidence 888888888999998877665555544444444444444444445667788999999999999995 5443 345555
Q ss_pred HHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHH-HHHHHHHHHhc-cCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 1152 NVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTF-CLATLFMILLP-SSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFV 1229 (1479)
Q Consensus 1152 ~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~-~~~~~~~v~~~-~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~ 1229 (1479)
+.+..+...+...... ++......+..+.. .+..++.+... .+....+..+....+.+.+..++..+...+..+
T Consensus 214 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~ 289 (547)
T PRK10522 214 YEPDAQEYRHHIIRAD----TFHLSAVNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTL 289 (547)
T ss_pred HhHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544433322211 11111111111111 11111111111 111122233333334445567788888888899
Q ss_pred HHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHH
Q 000463 1230 ENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKS 1309 (1479)
Q Consensus 1230 e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKS 1309 (1479)
.....+.+|+.++.+.|.|.+.. ...+ -|..+.|+++||+|+|+.+ +++|+|+||+|+|||++||||+||||||
T Consensus 290 ~~~~~a~~ri~~l~~~~~~~~~~--~~~~---~~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKS 363 (547)
T PRK10522 290 LSAQVAFNKLNKLALAPYKAEFP--RPQA---FPDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKS 363 (547)
T ss_pred HHHHHHHHHHHHHhccccccccc--cccc---cCcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHH
Confidence 99999999999987655432111 1111 1223679999999999743 4599999999999999999999999999
Q ss_pred HHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCccccccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHh
Q 000463 1310 TLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAA 1389 (1479)
Q Consensus 1310 TLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~ 1389 (1479)
||+++|+|+++|++|+|.+||+|+++++.+++|+++++|||||.+|+||+++| ..+.+|++++++++++++.+.+..
T Consensus 364 TL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~ 440 (547)
T PRK10522 364 TLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL 440 (547)
T ss_pred HHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc
Confidence 99999999999999999999999999999999999999999999999999999 236788999999999999887653
Q ss_pred CcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhh
Q 000463 1390 KPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVM 1467 (1479)
Q Consensus 1390 lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~ 1467 (1479)
++|. .+|.+||||||||++||||++++|+|||||||||+||+++++.|.+.+.+.. +++|+|+||||++++.
T Consensus 441 -~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~ 514 (547)
T PRK10522 441 -EDGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI 514 (547)
T ss_pred -cccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH
Confidence 4442 2488999999999999999999999999999999999999999999998665 4899999999999999
Q ss_pred hcCEEEEEeCCC
Q 000463 1468 DCDRVIVVDAGL 1479 (1479)
Q Consensus 1468 ~~DrIlVL~~G~ 1479 (1479)
.||+|++|++|+
T Consensus 515 ~~d~i~~l~~G~ 526 (547)
T PRK10522 515 HADRLLEMRNGQ 526 (547)
T ss_pred hCCEEEEEECCE
Confidence 999999999995
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-59 Score=590.97 Aligned_cols=508 Identities=19% Similarity=0.203 Sum_probs=393.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 326 FWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTS-GKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTL 404 (1479)
Q Consensus 326 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~riR~~L 404 (1479)
+|+.++...++.++..++..+.|+++..++|.+. ++. ....-+.+++.+++..++..++.....+...+++.++...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (529)
T TIGR02857 1 ARRALALLGLLGALGALLIIAQAWLLARVIDGLISAGE-PLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQL 79 (529)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888889999999999999999999773 322 11222334444555555666666666677778889999999
Q ss_pred HHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 000463 405 ITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMML-QLHAVWLMPLQISVALILLY---NCLGASVITTVVGIIG 480 (1479)
Q Consensus 405 ~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~lal~lL~---~~lG~s~l~gl~~~il 480 (1479)
...+|+|.++++.....++++|+++|.++.|++++.+++. .+..+....+.+++++++++ ..+++..+++ +++
T Consensus 80 r~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~---~~l 156 (529)
T TIGR02857 80 RERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLT---APL 156 (529)
T ss_pred HHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHH
Confidence 9999999999998888889999999999999999998764 35555555554444444333 2223222222 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 481 VMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMWS 560 (1479)
Q Consensus 481 ~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~~~ 560 (1479)
...+.....++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.++..+.-++..+...+.....+....+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (529)
T TIGR02857 157 IPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLEL 236 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223445677777788888899999999999999999999999999988888655443332222222212211111111
Q ss_pred HHHHH--HHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccccccC
Q 000463 561 TPVLI--STLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEG 638 (1479)
Q Consensus 561 ~p~~v--~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~ 638 (1479)
...+. .++.++.+....+.++.+.+++++.+...+..|+..+...+..+.+++++++|+.++++.++.+.+... .+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~-~~- 314 (529)
T TIGR02857 237 FATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAP-VT- 314 (529)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcC-CC-
Confidence 11111 112234444456789999999999999999999999999999999999999999999975432211111 11
Q ss_pred CCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe---------
Q 000463 639 CDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT--------- 709 (1479)
Q Consensus 639 ~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--------- 709 (1479)
......|+++|++|+|++. ++++|+|+||++++||+++|+||+|||||||+++|+|+++|++|+|.++|.
T Consensus 315 ~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~ 393 (529)
T TIGR02857 315 AAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADS 393 (529)
T ss_pred CCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHH
Confidence 1112469999999999743 357999999999999999999999999999999999999999999999983
Q ss_pred ----EEEEeccCcCCCCcHHHHHhcCCC-CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHH
Q 000463 710 ----TAYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAV 784 (1479)
Q Consensus 710 ----iayv~Q~~~i~~~Tv~enI~fg~~-~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 784 (1479)
++||+|+|+++++||+|||.+|.+ .+++...++++.+++.++++.+|+|.+|.+||+|.+||||||||++||||+
T Consensus 394 lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal 473 (529)
T TIGR02857 394 WRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAF 473 (529)
T ss_pred HHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHH
Confidence 899999999999999999999865 466778888999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEE
Q 000463 785 YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVM 841 (1479)
Q Consensus 785 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l 841 (1479)
+++|+++|||||||+||+++++.+++.+. ...+++|+|+|||+++.+..||+|++|
T Consensus 474 ~~~~~ililDE~ts~lD~~~~~~i~~~l~-~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 474 LRDAPLLLLDEPTAHLDAETEALVTEALR-ALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHH-HhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999987654 445789999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-61 Score=536.72 Aligned_cols=440 Identities=28% Similarity=0.434 Sum_probs=331.7
Q ss_pred CccEEEEeeEEEecCC-CCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCccc-----CCcEEEECC-------
Q 000463 642 NIAVEVRDGVFSWDDE-NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK-----ISGKVKVCG------- 708 (1479)
Q Consensus 642 ~~~i~~~~~~f~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~i~~~g------- 708 (1479)
+..++++|++..+... ....++++|||++++||.+|+||++|||||-..++++|+++. -+|+|.++|
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 3468899998888633 345789999999999999999999999999999999999975 478999887
Q ss_pred ----------eEEEEeccCcC-CC--CcHHHHHh----cCCCCChhhHHHHHHHhchHHHHHhcccC-CccccccCCCcc
Q 000463 709 ----------TTAYVAQTSWI-QN--GTIEENIL----FGLPMNRAKYGEVVRVCCLEKDLEMMEYG-DQTEIGERGINL 770 (1479)
Q Consensus 709 ----------~iayv~Q~~~i-~~--~Tv~enI~----fg~~~~~~~~~~v~~~~~l~~dl~~l~~g-d~t~ig~~g~~L 770 (1479)
+|++++|+|.- .| -||..-|. .......+.. ++.. .+-++..... -...+...+++|
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~A----r~r~-lelL~~VgI~~p~~rl~~yPHeL 158 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAA----RARA-LELLELVGIPEPEKRLDAYPHEL 158 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHH----HHHH-HHHHHHcCCCchhhhhhhCCccc
Confidence 48999999853 23 36655553 2222222111 1111 1112221111 123456778999
Q ss_pred chHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCccccc-CCEEEEEeCCEEEE
Q 000463 771 SGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHN-VDLILVMREGMIVQ 848 (1479)
Q Consensus 771 SGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~ 848 (1479)
||||||||.||.||..+||++|-||||.|||..+..+|.+.+.+... .|..+++||||+..+.. ||+|.||.+|++++
T Consensus 159 SGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred CcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee
Confidence 99999999999999999999999999999999999999976655443 39999999999999986 89999999999999
Q ss_pred ecChHHHHhcCc-chHHHHHHhhhhhhhhhccccCCCCCCCCCCCCCccccccccccCCCcccccccccCCCchhhhHHH
Q 000463 849 SGRYNALLNSGM-DFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGNSKLIKEEE 927 (1479)
Q Consensus 849 ~g~~~~l~~~~~-~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~ 927 (1479)
.|+.+++..... .|....-
T Consensus 239 ~~~t~~lF~~PqHpYTr~Ll------------------------------------------------------------ 258 (534)
T COG4172 239 TGTTETLFAAPQHPYTRKLL------------------------------------------------------------ 258 (534)
T ss_pred cCcHHHHhhCCCChHHHHHH------------------------------------------------------------
Confidence 998776653211 0000000
Q ss_pred HhcCcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 000463 928 RETGKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVR 1007 (1479)
Q Consensus 928 ~~~g~v~~~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~ 1007 (1479)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000463 1008 AYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAW 1087 (1479)
Q Consensus 1008 ~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~ 1087 (1479)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHH
Q 000463 1088 PTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNN 1167 (1479)
Q Consensus 1088 ~~~~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~ 1167 (1479)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcc
Q 000463 1168 GSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPS 1247 (1479)
Q Consensus 1168 ~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~ 1247 (1479)
+ .
T Consensus 259 ----------------------------------------------------------------------------~--a 260 (534)
T COG4172 259 ----------------------------------------------------------------------------A--A 260 (534)
T ss_pred ----------------------------------------------------------------------------h--c
Confidence 0 0
Q ss_pred chhccccCCCCCCCCCCCccEEEEeeeeeecC---------CCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcc
Q 000463 1248 EAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRS---------NTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1248 E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~---------~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl 1318 (1479)
|+ ....+|..-...--++.+|+.+.|+- +.-.+.+||||+.++||.+||||+||||||||-++|+|+
T Consensus 261 eP----~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL 336 (534)
T COG4172 261 EP----SGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336 (534)
T ss_pred CC----CCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhh
Confidence 00 00000000011123555555555531 112489999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCEecCCCChhh---hhcceEEEcCccc--cc-cccHhhhcC----CCC-CC----CHHHHHHHHHHcCc
Q 000463 1319 VEPSGGRIIIDGIDISLLGLHD---LRSRFGIIPQEPV--LF-EGTVRSNID----PIG-QY----SDEEIWKSLERCQL 1383 (1479)
Q Consensus 1319 ~~p~~G~I~IDG~dI~~i~l~~---LR~~i~iIpQdp~--LF-~gTIR~NLd----p~~-~~----sd~eI~~aL~~~~L 1383 (1479)
.++. |+|.++|.||...+.++ +|+++-+|+|||+ |= .-||-+-|. -.. .. -|+.+.+||+.+||
T Consensus 337 ~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGL 415 (534)
T COG4172 337 IPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGL 415 (534)
T ss_pred cCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCC
Confidence 9876 99999999999998776 6899999999997 21 225544442 111 22 36779999999999
Q ss_pred hHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEcc
Q 000463 1384 KDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAH 1461 (1479)
Q Consensus 1384 ~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAH 1461 (1479)
+.-.... | ...|||||||||+||||++-+|++++||||||+||..-..+|.+.+++..+ +-+-++|+|
T Consensus 416 Dp~~r~R---Y-------PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISH 485 (534)
T COG4172 416 DPATRNR---Y-------PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISH 485 (534)
T ss_pred ChhHhhc---C-------CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 8765432 2 235899999999999999999999999999999999999999999998653 568999999
Q ss_pred Chhhhhh-cCEEEEEeCCC
Q 000463 1462 RIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1462 Rl~ti~~-~DrIlVL~~G~ 1479 (1479)
+|..++. ||+|+||.+||
T Consensus 486 DL~VvrAl~~~viVm~~Gk 504 (534)
T COG4172 486 DLAVVRALCHRVIVMRDGK 504 (534)
T ss_pred cHHHHHHhhceEEEEeCCE
Confidence 9999988 99999999996
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-60 Score=605.13 Aligned_cols=187 Identities=21% Similarity=0.362 Sum_probs=159.3
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.|+++|++++|+. ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+++. .+++
T Consensus 312 ~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLG 378 (638)
T ss_pred eEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEE
Confidence 5999999999963 45999999999999999999999999999999999999999999999741 2699
Q ss_pred EEcCcc--cccc-ccHhhhcCCC-CCCCHHHHHHHHHHcCchH-HHHhCcCCccccccCCCCCCCchHHHHHHHHHHhcc
Q 000463 1347 IIPQEP--VLFE-GTVRSNIDPI-GQYSDEEIWKSLERCQLKD-VVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLK 1421 (1479)
Q Consensus 1347 iIpQdp--~LF~-gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~-~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1421 (1479)
|+||++ .+.. .|+.+++... ....++++.++|+..++.+ .... ++ ..||||||||++||||+++
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~-------~~----~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTE-------ET----RRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcC-------ch----hhCCHHHHHHHHHHHHHhc
Confidence 999985 3443 3788876321 2334567888888888753 3322 22 3699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1422 HSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1422 ~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+|++|||||||++||..+...+.+.|++. +.|||+|||+++.+.. ||||++|++|+
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~ 504 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGK 504 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999885 4599999999999987 99999999985
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-58 Score=635.31 Aligned_cols=449 Identities=18% Similarity=0.230 Sum_probs=346.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000463 1012 THVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIF 1091 (1479)
Q Consensus 1012 ~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1091 (1479)
...+.+....+...+++++++.|..+|++.++|+++||+++|++.++... ..+..+....+.++..++++...-....+
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l 444 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASL 444 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 46677788888889999999999999999999999999999999999875 34444444444444333332211001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhH
Q 000463 1092 LVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNE 1171 (1479)
Q Consensus 1092 ~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 1171 (1479)
+.++++++...+..++.+..+..++.....+....+.++|.++|+++||+|++|+.+.++..+..+...+..........
T Consensus 445 ~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~ 524 (1495)
T PLN03232 445 FGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSA 524 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111122222233333334444444455566688899999999999999999999988887766665554433332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhc
Q 000463 1172 WLGFRLELLGSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAW 1251 (1479)
Q Consensus 1172 wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~ 1251 (1479)
+..+....... ++.+..+.......+.++++.+-.++++...+..++..+......+.+..+|.+|+.++++.+++...
T Consensus 525 ~~~~~~~~~~~-~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~ 603 (1495)
T PLN03232 525 FNSFILNSIPV-VVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA 603 (1495)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 22221111111 11112222223346678899888888888888888988888999999999999999999987654221
Q ss_pred cccCCCCCCCCCCCccEEEEeeeeeecCC-CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcC
Q 000463 1252 KMEDRLPPPNWPAHGNVDLIDLQVRYRSN-TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDG 1330 (1479)
Q Consensus 1252 ~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG 1330 (1479)
. .+ +..+..+.|+|+|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+.
T Consensus 604 ~----~~-~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~--- 675 (1495)
T PLN03232 604 Q----NP-PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV--- 675 (1495)
T ss_pred c----cC-CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---
Confidence 1 11 111234679999999999753 35699999999999999999999999999999999999999999763
Q ss_pred EecCCCChhhhhcceEEEcCccccccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHH
Q 000463 1331 IDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQR 1410 (1479)
Q Consensus 1331 ~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1410 (1479)
.+|++|+||||+|.+|+|||||||....++++++++++++.|+++++++.+|+|+||.|||+|.|||||||
T Consensus 676 ---------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 746 (1495)
T PLN03232 676 ---------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQK 746 (1495)
T ss_pred ---------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHH
Confidence 46889999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHH-HHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1411 QLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ-RIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1411 Qrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq-~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|||+||||++++|+|+|||||||+||++|++.|. +.++...+++|+|+||||++++..||+|++|++|+
T Consensus 747 QRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~ 816 (1495)
T PLN03232 747 QRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGM 816 (1495)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999874 55777778999999999999999999999999995
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-58 Score=633.68 Aligned_cols=448 Identities=18% Similarity=0.250 Sum_probs=347.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000463 1012 THVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIF 1091 (1479)
Q Consensus 1012 ~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1091 (1479)
...+.+....+...+++++++.|..++++.++|+++|++++|++.++.... .+..+....+.++..++++...-....+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l 444 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASL 444 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777778888899999999999999999999999999999999998874 3444444444444433333221111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhH
Q 000463 1092 LVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNE 1171 (1479)
Q Consensus 1092 ~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 1171 (1479)
+.++++++.+.+..++.+..+..++.....+....+.++|.++|+++||+|++|+.|.++..+..+...+..........
T Consensus 445 ~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~ 524 (1622)
T PLN03130 445 IGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSA 524 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222223333333444444444444555667778899999999999999999999998887766654443332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhc
Q 000463 1172 WLGFRLELLGSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAW 1251 (1479)
Q Consensus 1172 wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~ 1251 (1479)
+..+....... .+.+..+.......+.++++.+-.++++...+..++..+......+....+|.+|+.+|++.+++.+.
T Consensus 525 ~~~~~~~~~~~-~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~ 603 (1622)
T PLN03130 525 FNSFILNSIPV-LVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL 603 (1622)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 22211111111 11122222233346778999888888888888888888888899999999999999999976543211
Q ss_pred cccCCCCCCCCCCCccEEEEeeeeeecCC-CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCc-cEEEEc
Q 000463 1252 KMEDRLPPPNWPAHGNVDLIDLQVRYRSN-TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSG-GRIIID 1329 (1479)
Q Consensus 1252 ~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~-G~I~ID 1329 (1479)
. + ++ .-+..+.|+|+|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|.+ |+|.+
T Consensus 604 ~--~--~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l- 677 (1622)
T PLN03130 604 P--N--PP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI- 677 (1622)
T ss_pred c--C--Cc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-
Confidence 0 0 11 11234679999999999753 3569999999999999999999999999999999999999999 89973
Q ss_pred CEecCCCChhhhhcceEEEcCccccccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchH
Q 000463 1330 GIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQ 1409 (1479)
Q Consensus 1330 G~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1409 (1479)
|++|+||||+|.+|+|||||||....++++++++++++.|+|+++++.+|+|+||.|||+|.||||||
T Consensus 678 ------------~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQ 745 (1622)
T PLN03130 678 ------------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQ 745 (1622)
T ss_pred ------------cCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHH
Confidence 67999999999999999999999877889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHH-HHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1410 RQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1410 rQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~I-q~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
||||+||||++++|+|+|||||||+||+++++.| ++.++...+++|+|+||||++.+..||+|++|++|+
T Consensus 746 KQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~ 816 (1622)
T PLN03130 746 KQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGM 816 (1622)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999877 567877778999999999999999999999999995
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-59 Score=595.46 Aligned_cols=188 Identities=22% Similarity=0.343 Sum_probs=158.3
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
-++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+ |.++ +|+
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 4899999999964 35999999999999999999999999999999999999999999999 4332 699
Q ss_pred EEcCcc-ccccc-cHhhhcCCC-CCC--C--HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHh
Q 000463 1347 IIPQEP-VLFEG-TVRSNIDPI-GQY--S--DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1347 iIpQdp-~LF~g-TIR~NLdp~-~~~--s--d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1419 (1479)
|++|++ .++.. |+++|+... ... . +.++.+.|+..++.+.. .+.++ ..||||||||++||||+
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~----~~LSgGekqRl~la~al 455 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKR------AMTPV----KALSGGERNRLLLARLF 455 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHH------HhChh----hhCCHHHHHHHHHHHHH
Confidence 999986 46654 999999632 111 2 45677778777774211 22233 35999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEe-CCC
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVD-AGL 1479 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~-~G~ 1479 (1479)
+++|++|||||||++||..+...+.+.|++. ++|||+|||+.+.+.. ||+|++|+ +|+
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~ 515 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGK 515 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCe
Confidence 9999999999999999999999999999875 5799999999999976 99999997 774
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=618.35 Aligned_cols=472 Identities=18% Similarity=0.176 Sum_probs=365.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 393 SQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMML-QLHAVWLMPLQISVALILLYNCLGASV 471 (1479)
Q Consensus 393 ~~~~g~riR~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~lal~lL~~~lG~s~ 471 (1479)
....+.+.-..+...+|+|.++.+.+...+..+|+|+|.++.|++.+.+.+. .+..+...++.++.++++++..-.+.+
T Consensus 1029 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~ 1108 (1522)
T TIGR00957 1029 VSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAA 1108 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777888999999999888889999999999999999998764 444555556666655555443222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 472 ITTVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSI 551 (1479)
Q Consensus 472 l~gl~~~il~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~ 551 (1479)
++.++++++...+..+..+..+..++...+.+.......+|.++|+++||.|+||+.|.++..+.-+...+.........
T Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 1188 (1522)
T TIGR00957 1109 VIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVAN 1188 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222233333344455555555566677789999999999999999999998887666555444322222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcc
Q 000463 552 SGNIIVMWSTPVLISTLTFATALL-FGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVN 630 (1479)
Q Consensus 552 a~~~~~~~~~p~~v~~~tF~~~~l-~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~ 630 (1479)
............++ ++..+.+.. ..+.++++.+..++.+...+..|+..+......+.++.+|.+||.+|++.++..+
T Consensus 1189 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~ 1267 (1522)
T TIGR00957 1189 RWLAVRLECVGNCI-VLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAP 1267 (1522)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 11111111111111 111222222 3467999999999999999999999999999999999999999999997654322
Q ss_pred cccc--cccC-CCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEEC
Q 000463 631 ESVE--RVEG-CDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVC 707 (1479)
Q Consensus 631 ~~~~--~~~~-~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~ 707 (1479)
...+ ..+. -+.++.|+++|++|+|+++ .+++|+|+||+|++||++||||++|||||||+++|+|+++|++|+|.++
T Consensus 1268 ~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~Id 1346 (1522)
T TIGR00957 1268 WQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIID 1346 (1522)
T ss_pred ccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEEC
Confidence 1111 1111 0234679999999999753 3479999999999999999999999999999999999999999999999
Q ss_pred C-------------eEEEEeccCcCCCCcHHHHHh-cCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchH
Q 000463 708 G-------------TTAYVAQTSWIQNGTIEENIL-FGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGG 773 (1479)
Q Consensus 708 g-------------~iayv~Q~~~i~~~Tv~enI~-fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 773 (1479)
| +++||||+|.+|++||||||. ++ +++++...++++.|++.+.+..+|.|.+|.+||+|.+||||
T Consensus 1347 G~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgG 1425 (1522)
T TIGR00957 1347 GLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVG 1425 (1522)
T ss_pred CEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHH
Confidence 8 379999999999999999998 55 56777788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChH
Q 000463 774 QKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYN 853 (1479)
Q Consensus 774 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~ 853 (1479)
||||++||||++++|+|+|||||||+||+++.+.|.+ .++...+++|+|+|+|+++.+..+|+|+||++|+|++.|+++
T Consensus 1426 QrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~-~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~ 1504 (1522)
T TIGR00957 1426 QRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQS-TIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPS 1504 (1522)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999888765 455556799999999999999999999999999999999999
Q ss_pred HHHhcCcchHHHHHH
Q 000463 854 ALLNSGMDFGALVAA 868 (1479)
Q Consensus 854 ~l~~~~~~f~~l~~~ 868 (1479)
|++++++.|.++.++
T Consensus 1505 eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1505 NLLQQRGIFYSMAKD 1519 (1522)
T ss_pred HHHhCCCHHHHHHHH
Confidence 999888888888754
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=617.97 Aligned_cols=203 Identities=22% Similarity=0.316 Sum_probs=169.7
Q ss_pred cEEEEeeeeeecC-----------CCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC--CccEEEEcCEec
Q 000463 1267 NVDLIDLQVRYRS-----------NTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP--SGGRIIIDGIDI 1333 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~-----------~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p--~~G~I~IDG~dI 1333 (1479)
.+.|+||++.++. +...+|+|||++++|||.+||+|+||||||||+++|.|..++ .+|+|.+||.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6899999998742 223599999999999999999999999999999999999763 689999999886
Q ss_pred CCCChhhhhcceEEEcCccccccc-cHhhhcCCC------CCCCHH----HHHHHHHHcCchHHHHhCcCCccccccCCC
Q 000463 1334 SLLGLHDLRSRFGIIPQEPVLFEG-TVRSNIDPI------GQYSDE----EIWKSLERCQLKDVVAAKPDKLDSLVADSG 1402 (1479)
Q Consensus 1334 ~~i~l~~LR~~i~iIpQdp~LF~g-TIR~NLdp~------~~~sd~----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1402 (1479)
. ....|+.++||+|++.++.. ||+|||... .+.+++ .+.++++..+|.+. .|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 4 24567889999999987764 999999521 122333 36778888888654 356665433
Q ss_pred -CCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhh-h-hhcCEEEEEeC-
Q 000463 1403 -DNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPT-V-MDCDRVIVVDA- 1477 (1479)
Q Consensus 1403 -~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~t-i-~~~DrIlVL~~- 1477 (1479)
..||||||||++|||||+.+|+||+||||||+||+.+...|.+.|++.. +++|||+++|+++. + ..||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 5799999999999999999999999999999999999999999999865 47899999999984 4 45999999986
Q ss_pred CC
Q 000463 1478 GL 1479 (1479)
Q Consensus 1478 G~ 1479 (1479)
|+
T Consensus 1097 G~ 1098 (1470)
T PLN03140 1097 GQ 1098 (1470)
T ss_pred CE
Confidence 64
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-57 Score=524.68 Aligned_cols=471 Identities=20% Similarity=0.243 Sum_probs=349.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHH
Q 000463 995 STAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYIT 1074 (1479)
Q Consensus 995 ~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~ 1074 (1479)
++.++..++..+|+..+.+.|.+.-..+....+...+++|..--...+..+.+ +|.+.+..++...-...+.-.--
T Consensus 71 ~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW 146 (580)
T COG4618 71 GLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPW 146 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCch
Confidence 44556778889999999999999999999999999988876543333333333 46666666653321111111111
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHH----H
Q 000463 1075 LLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFY----Q 1150 (1479)
Q Consensus 1075 ~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~----~ 1150 (1479)
.-..+++++.+.|++.++.+.-.++.+.+...--...++--+..++....-..+..-+..+..+|+|.|+..... +
T Consensus 147 ~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~ 226 (580)
T COG4618 147 MPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGR 226 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHH
Confidence 122334455556665554433332222222222222233333334444555678888999999999999876544 4
Q ss_pred HHHHHHHHHhhhHHHHHhHhHHH-HHHHHHHHHHHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 1151 ENVNRVNGNLRMDFHNNGSNEWL-GFRLELLGSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFV 1229 (1479)
Q Consensus 1151 ~~~~~~d~~~~~~~~~~~~~~wl-~~~l~~l~~~~~~~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~ 1229 (1479)
.+.+.++.+.++.........-- .+|+ ++.+.+ ..+.+++...+.+++|.+-..--..-....++-..+..|.++
T Consensus 227 ~~~~~L~~~~~asd~~~~~~~~Sr~~Rm-~lQs~i---Lg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~ 302 (580)
T COG4618 227 FNAAYLSAQERASDRNGAFGALSRALRM-ALQSAV---LGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQF 302 (580)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHH---HhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHH
Confidence 45555555544443322211100 0111 111111 222234445778888765443333334445677788899999
Q ss_pred HHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHH
Q 000463 1230 ENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKS 1309 (1479)
Q Consensus 1230 e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKS 1309 (1479)
-....|..|+.+.++..++..... +-| ..+|.+.++++++.-++..+++|+|+||+++|||-+|||||||||||
T Consensus 303 ~~Ar~s~~Rl~~lL~~~p~~~~~m----~LP--~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKS 376 (580)
T COG4618 303 VAARQSYKRLNELLAELPAAAERM----PLP--APQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKS 376 (580)
T ss_pred HHHHHHHHHHHHHHHhCccccCCC----CCC--CCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHH
Confidence 999999999999987655443221 111 13689999999997776677899999999999999999999999999
Q ss_pred HHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCccccccccHhhhcCCCC-CCCHHHHHHHHHHcCchHHHH
Q 000463 1310 TLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIG-QYSDEEIWKSLERCQLKDVVA 1388 (1479)
Q Consensus 1310 TLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~ 1388 (1479)
||.++|.|.+.|.+|.|++||-|+++.+.+++-++|||.|||-.||+|||+|||.-|+ +.+++.|.+|.+.++.||.|.
T Consensus 377 TLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl 456 (580)
T COG4618 377 TLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELIL 456 (580)
T ss_pred HHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998877 788889999999999999999
Q ss_pred hCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhh
Q 000463 1389 AKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVM 1467 (1479)
Q Consensus 1389 ~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~ 1467 (1479)
++|+||||.|||+|..|||||||||+||||++.+|+++|||||-||||.+-|+.+.++|.+.. +++|+|+||||.+.+.
T Consensus 457 ~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~ 536 (580)
T COG4618 457 RLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA 536 (580)
T ss_pred hCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999988764 6899999999999999
Q ss_pred hcCEEEEEeCCC
Q 000463 1468 DCDRVIVVDAGL 1479 (1479)
Q Consensus 1468 ~~DrIlVL~~G~ 1479 (1479)
.+|+|+||++|+
T Consensus 537 ~~Dkilvl~~G~ 548 (580)
T COG4618 537 SVDKILVLQDGR 548 (580)
T ss_pred hcceeeeecCCh
Confidence 999999999996
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-58 Score=587.03 Aligned_cols=188 Identities=19% Similarity=0.307 Sum_probs=158.9
Q ss_pred ccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcce
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRF 1345 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1345 (1479)
..++++|++++|+.+ +.+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+++ +.+|
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 469999999999643 3589999999999999999999999999999999999999999999875 3579
Q ss_pred EEEcCccccccccHhhhcC-----CCCCCCHHHHHHHHHHcCchH-HHHhCcCCccccccCCCCCCCchHHHHHHHHHHh
Q 000463 1346 GIIPQEPVLFEGTVRSNID-----PIGQYSDEEIWKSLERCQLKD-VVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1346 ~iIpQdp~LF~gTIR~NLd-----p~~~~sd~eI~~aL~~~~L~~-~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1419 (1479)
+|+||++. ...++.+|.. .+...+++++.++|+..++.+ ..... ...||||||||++||||+
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~-----------~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP-----------MYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCC-----------ccccCHHHHHHHHHHHHH
Confidence 99999973 2224444421 122456788999999999864 32222 346999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+++|++|||||||++||..+...+.+.|++. +.|||+|||+++.+.. ||||++|++|+
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~ 701 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGK 701 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999998874 3599999999999987 99999999985
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-55 Score=508.35 Aligned_cols=475 Identities=24% Similarity=0.352 Sum_probs=363.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 377 VAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQI 456 (1479)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~g~riR~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~~~~~~w~~plqi 456 (1479)
++..++.+..|+..| |+-+.+.-.+|+|...++..-......|++.|.+..|++.+++.+......|...+-+
T Consensus 73 ~~RY~ERlvsH~Atf-------rvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~ 145 (573)
T COG4987 73 AARYVERLVSHDATF-------RVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVL 145 (573)
T ss_pred HHHHHHHHhhhHHHH-------HHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHH
Confidence 344455555555554 5677777889999999999888888999999999999999999999888888776655
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHH
Q 000463 457 SVALILL--YNCLGASVITTVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRIL 534 (1479)
Q Consensus 457 ~lal~lL--~~~lG~s~l~gl~~~il~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~ 534 (1479)
+++..+. |.-++.+.+.++..+++++.+.....+..++..++..+.+..--....+.+.|+.-++++|-++.|.++++
T Consensus 146 ~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~ 225 (573)
T COG4987 146 IAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE 225 (573)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHH
Confidence 5544443 44555666666665555555566666777777777666676666778899999999999999999988765
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHhcCccC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 535 SFRESEFGWLT---KFMYSISGNIIVMWS-TPVLISTLTFATA--LLFGVPLD-AGSVFTTTTIFKILQEPIRNFPQSMI 607 (1479)
Q Consensus 535 ~~R~~El~~l~---k~~~~~a~~~~~~~~-~p~~v~~~tF~~~--~l~~~~Lt-~~~vFt~lalf~iL~~pl~~lp~~i~ 607 (1479)
. .|..|.+ |.........++..+ .-.+++...++.. .-.|+ .+ +..+...+..|..+-.-.-..|.++.
T Consensus 226 ~---~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~-~~~~~aa~~ll~~f~~~eaf~~L~~~A~~ 301 (573)
T COG4987 226 A---TEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGA-LAQPGAALALLVIFAALEAFEPLAPGAFQ 301 (573)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCC-cchhHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 4 3444433 222222222222221 2222221212111 11232 33 22222222223222221123337778
Q ss_pred HHHHHHHHHHHHHHHhccccCcccccccccCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChH
Q 000463 608 SLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKS 687 (1479)
Q Consensus 608 ~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKS 687 (1479)
.+.|+..|.+|+.+.++.++......+..+. .+..++++|++|+|+++ +.++|+|+||++++||.+||+|++|||||
T Consensus 302 ~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~~~--~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKS 378 (573)
T COG4987 302 HLGQVIASARRLNDILDQKPEVTFPDEQTAT--TGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKS 378 (573)
T ss_pred HhhHHHHHHHHHhhhccCCcccCCCccccCC--ccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHH
Confidence 8899999999999999876544322111121 22389999999999864 45899999999999999999999999999
Q ss_pred HHHHHHhcCcccCCcEEEECC-------------eEEEEeccCcCCCCcHHHHHhcCCCC-ChhhHHHHHHHhchHHHHH
Q 000463 688 SLLASILGEMHKISGKVKVCG-------------TTAYVAQTSWIQNGTIEENILFGLPM-NRAKYGEVVRVCCLEKDLE 753 (1479)
Q Consensus 688 TLl~~llG~~~~~~G~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~fg~~~-~~~~~~~v~~~~~l~~dl~ 753 (1479)
||++.|.|-++|++|+|.++| .+++++|.+.+|++|+|||+..++|- +.+...++++..+|++-++
T Consensus 379 TllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~ 458 (573)
T COG4987 379 TLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLE 458 (573)
T ss_pred HHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHH
Confidence 999999999999999999998 36899999999999999999999874 3455667899999999999
Q ss_pred hcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccc
Q 000463 754 MMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLH 833 (1479)
Q Consensus 754 ~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~ 833 (1479)
..|+|.+|.+||.|..||||||||++|||++.+|+++.||||||.|||+.|++++.+.+.+ ..+|||+|+|||++..++
T Consensus 459 ~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~-~~~~kTll~vTHrL~~le 537 (573)
T COG4987 459 SAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE-HAEGKTLLMVTHRLRGLE 537 (573)
T ss_pred hChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHH-HhcCCeEEEEecccccHh
Confidence 9999999999999999999999999999999999999999999999999999999976554 457999999999999999
Q ss_pred cCCEEEEEeCCEEEEecChHHHHhcCcchHHHH
Q 000463 834 NVDLILVMREGMIVQSGRYNALLNSGMDFGALV 866 (1479)
Q Consensus 834 ~~D~i~~l~~G~i~~~g~~~~l~~~~~~f~~l~ 866 (1479)
.+|+|++|++|+++++|+|.+++.+++.|.++.
T Consensus 538 ~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~ 570 (573)
T COG4987 538 RMDRIIVLDNGKIIEEGTHAELLANNGRYKRLY 570 (573)
T ss_pred hcCEEEEEECCeeeecCCHHhhhccccHHHHHh
Confidence 999999999999999999999999888887764
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-55 Score=511.81 Aligned_cols=517 Identities=24% Similarity=0.300 Sum_probs=402.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC-C--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 000463 341 LCVMYVGPVLIQRFVDFTSGKSS-S--FYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSC 417 (1479)
Q Consensus 341 ~~~~~~~P~ll~~li~~~~~~~~-~--~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~riR~~L~~~Iy~K~L~ls~ 417 (1479)
-.+....|++++..++-+++-+. + .......+.+++++.+..+++.-.-.+....+..++--.....+|+..+.++.
T Consensus 43 K~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~ 122 (591)
T KOG0057|consen 43 KILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDL 122 (591)
T ss_pred hHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 45556679999999998863222 2 11234455666677777777766666666677777666777889999999999
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 000463 418 SARQAHGVGQIVNYMAVDAQQLSDMMLQ-LHAVWLMPLQISVALILLYNCLGASVITTVVG-IIGVMIFVVMGTKRNNRF 495 (1479)
Q Consensus 418 ~~~~~~~~G~ivnlms~D~~ri~~~~~~-~~~~w~~plqi~lal~lL~~~lG~s~l~gl~~-~il~~~~~~~~~~~~~~~ 495 (1479)
+...+..+|++.+.|.--...|.+++.. +..+.-..+++.+....+|...|++..+-..+ +..-..+...++++-.++
T Consensus 123 ~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~f 202 (591)
T KOG0057|consen 123 SFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRF 202 (591)
T ss_pred HhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHH
Confidence 9888889999999999888888887653 33444455677777778999999765443333 333334455678888899
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 000463 496 QFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILS-FRESEFGWLTKFMYSISGNI---IVMWSTPVLISTLTFA 571 (1479)
Q Consensus 496 q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~-~R~~El~~l~k~~~~~a~~~---~~~~~~p~~v~~~tF~ 571 (1479)
++++.++.|+-.+..-+.|.|-.+||.|+-|+.-.++... +++.|-..++....+...+. .+|. +| ++.++..+
T Consensus 203 R~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFs-v~-~~~im~l~ 280 (591)
T KOG0057|consen 203 RKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFS-VA-LTFIMVLG 280 (591)
T ss_pred HHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHH-HH-HHHHHHHH
Confidence 9999999999999999999999999999999988877744 34444443333332222221 1111 11 11111122
Q ss_pred HHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccccccCCCCCccEEEEeeE
Q 000463 572 TALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGV 651 (1479)
Q Consensus 572 ~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~ 651 (1479)
..-...+.+|.+...-.-+++..|+.|++.|...+..+.|+..-.+-....+..++...+. ..|....+..|+++|++
T Consensus 281 ~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~--~~~i~~~~~~I~F~dV~ 358 (591)
T KOG0057|consen 281 SNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--ALPIELFGGSIEFDDVH 358 (591)
T ss_pred hhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc--cCCcccCCCcEEEEeeE
Confidence 2223455799999999999999999999999999999999888777665544433221111 11222244579999999
Q ss_pred EEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-------------EEEEeccCc
Q 000463 652 FSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------TAYVAQTSW 718 (1479)
Q Consensus 652 f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------iayv~Q~~~ 718 (1479)
|+|++ ++++|+++||+|++||.|||+|+|||||||++++|+++.+ .+|+|.++|. ||||||+..
T Consensus 359 f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~ 435 (591)
T KOG0057|consen 359 FSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSV 435 (591)
T ss_pred EEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCccc
Confidence 99973 4569999999999999999999999999999999999999 9999999993 899999999
Q ss_pred CCCCcHHHHHhcCCCCChhhHHHHHHHh---chHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEEEeC
Q 000463 719 IQNGTIEENILFGLPMNRAKYGEVVRVC---CLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDD 795 (1479)
Q Consensus 719 i~~~Tv~enI~fg~~~~~~~~~~v~~~~---~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDe 795 (1479)
+||.||.+||.+|.+.- .++++.++| ++.+-+..+|+|.+|.+||+|..|||||||||+||||+.+||+|+++||
T Consensus 436 LFndTIl~NI~YGn~sa--s~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DE 513 (591)
T KOG0057|consen 436 LFNDTILYNIKYGNPSA--SDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDE 513 (591)
T ss_pred ccchhHHHHhhcCCCCc--CHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecC
Confidence 99999999999998742 234455554 6778899999999999999999999999999999999999999999999
Q ss_pred ccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcCcchHHHHH
Q 000463 796 VFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVA 867 (1479)
Q Consensus 796 p~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~f~~l~~ 867 (1479)
|||+||.++.+.+++.+.. ...|||+|+|-|+++.++.+|+|+++++|++.+.|+++|++..++.|.++..
T Consensus 514 aTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~ 584 (591)
T KOG0057|consen 514 ATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWT 584 (591)
T ss_pred cccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhc
Confidence 9999999999999976554 6789999999999999999999999999999999999999997777777654
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-57 Score=551.27 Aligned_cols=469 Identities=24% Similarity=0.372 Sum_probs=333.0
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--eEEEEeccCcCCC
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--TTAYVAQTSWIQN 721 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--~iayv~Q~~~i~~ 721 (1479)
.|+++|++++|+ ++++|+|+||++.+|+.+||||+||+||||||++|.|+..|++|+|...+ +++|++|++....
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 588999999994 46899999999999999999999999999999999999999999999987 7999999988874
Q ss_pred -CcHHHHHhcCCCCCh---hhHHHHHHH-------------------------hchHHHHHhcccCCccccccCCCccch
Q 000463 722 -GTIEENILFGLPMNR---AKYGEVVRV-------------------------CCLEKDLEMMEYGDQTEIGERGINLSG 772 (1479)
Q Consensus 722 -~Tv~enI~fg~~~~~---~~~~~v~~~-------------------------~~l~~dl~~l~~gd~t~ig~~g~~LSG 772 (1479)
.||.|.++.|...-. ..|++.... ......+..+ |.... .....+|||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~~-~~~~~~LSG 156 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPDE-DRPVSSLSG 156 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCcc-cCchhhcCH
Confidence 599999998753110 111111100 0011112222 22222 456679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEE-Eec
Q 000463 773 GQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIV-QSG 850 (1479)
Q Consensus 773 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~-~~g 850 (1479)
|||.||+|||||..+||++||||||++||..+...+-+. +. ..+| |+|+||||.+||.. |++|+.++.|++. +.|
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~-L~-~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~G 233 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDY-LK-RYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKG 233 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHH-HH-hCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecC
Confidence 999999999999999999999999999999998877433 33 2356 99999999999987 7999999999874 678
Q ss_pred ChHHHHhcCcchHHHHHHhhhhhhhhhccccCCCCCCCCCCCCCccccccccccCCCcccccccccCCCchhhhHHHHhc
Q 000463 851 RYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGNSKLIKEEERET 930 (1479)
Q Consensus 851 ~~~~l~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~ 930 (1479)
+|+.+.+.. ....+... .. .+...+..+.+
T Consensus 234 ny~~~~~~r----------~~~~~~~~------------------------~~------------~~~~~~~~~~~---- 263 (530)
T COG0488 234 NYSSYLEQK----------AERLRQEA------------------------AA------------YEKQQKELAKE---- 263 (530)
T ss_pred CHHHHHHHH----------HHHHHHHH------------------------HH------------HHHHHHHHHHH----
Confidence 887665421 11000000 00 00000000000
Q ss_pred CcchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 000463 931 GKVGLHVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYF 1010 (1479)
Q Consensus 931 g~v~~~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~ 1010 (1479)
..++.
T Consensus 264 --------~~~i~------------------------------------------------------------------- 268 (530)
T COG0488 264 --------QEWIR------------------------------------------------------------------- 268 (530)
T ss_pred --------HHHHH-------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000463 1011 VTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTI 1090 (1479)
Q Consensus 1011 ~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 1090 (1479)
|+.+
T Consensus 269 --------------------------------------r~~~-------------------------------------- 272 (530)
T COG0488 269 --------------------------------------RGKA-------------------------------------- 272 (530)
T ss_pred --------------------------------------HHHh--------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHh
Q 000463 1091 FLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSN 1170 (1479)
Q Consensus 1091 ~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~ 1170 (1479)
...++++
T Consensus 273 ----------------~~~~~k~--------------------------------------------------------- 279 (530)
T COG0488 273 ----------------AASKAKK--------------------------------------------------------- 279 (530)
T ss_pred ----------------ccchHHH---------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh--hcCccc
Q 000463 1171 EWLGFRLELLGSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQF--TEIPSE 1248 (1479)
Q Consensus 1171 ~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~--~~~~~E 1248 (1479)
.+..+...+++.+- ...|.+
T Consensus 280 ----------------------------------------------------------a~sr~k~l~k~~~~~~~~~~~~ 301 (530)
T COG0488 280 ----------------------------------------------------------AKSRIKRLEKLEARLAEERPVE 301 (530)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHhhhhhccccc
Confidence 00001111111110 000110
Q ss_pred hhccccCCCCCCC-CCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEE
Q 000463 1249 AAWKMEDRLPPPN-WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327 (1479)
Q Consensus 1249 ~~~~~~~~~~~~~-wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~ 1327 (1479)
......-..+++. -..+-.++++|+++.|.++ .++++++||.|++|++||||||||+|||||+++|.|-..|.+|+|.
T Consensus 302 ~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~ 380 (530)
T COG0488 302 EGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK 380 (530)
T ss_pred ccccceeeccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEE
Confidence 0000000011111 1223468999999999765 5699999999999999999999999999999999999999999999
Q ss_pred EcCEecCCCChhhhhcceEEEcCcc-cccc-ccHhhhcCCCC-CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCC
Q 000463 1328 IDGIDISLLGLHDLRSRFGIIPQEP-VLFE-GTVRSNIDPIG-QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDN 1404 (1479)
Q Consensus 1328 IDG~dI~~i~l~~LR~~i~iIpQdp-~LF~-gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1404 (1479)
+.- . -++||.+|+- .++. .|+-+++.... +..+.++...|.+.++...-... +| ..
T Consensus 381 ~g~-~----------v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~------~v----~~ 439 (530)
T COG0488 381 VGE-T----------VKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEK------PV----GV 439 (530)
T ss_pred eCC-c----------eEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhC------ch----hh
Confidence 853 1 2699999998 4443 38999986543 44589999999999997654433 33 35
Q ss_pred CCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeC
Q 000463 1405 WSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDA 1477 (1479)
Q Consensus 1405 LSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~ 1477 (1479)
||||||-|+.||+.++.+|.+|||||||.+||.+|-..+.++|.+. +.|||+|+|+...+.. |++|+++++
T Consensus 440 LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 440 LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred cCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC
Confidence 9999999999999999999999999999999999999999999874 6799999999999998 999999974
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-55 Score=566.25 Aligned_cols=511 Identities=13% Similarity=0.091 Sum_probs=398.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCC-c----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 950 GVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFN-P----SLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFS 1024 (1479)
Q Consensus 950 ~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~-~----~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~ 1024 (1479)
.+++.+++.++...+.+..+++.....+.....+.. . ..++.+++++.++..+..++...+......+..+.+|+
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 176 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYS 176 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566667777778888877665431111111 1 11223333444455556666666677777888888888
Q ss_pred HHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Q 000463 1025 QILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQ-YAWPTIFLVIPLAWANYWY 1103 (1479)
Q Consensus 1025 ~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~ip~~~~~~~~ 1103 (1479)
+.+++....++.|||. ++|++++|+++|++.+...+...+..++..++.+++.+++++. .+|.+.++++...++..++
T Consensus 177 ~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i 255 (659)
T TIGR00954 177 KYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVV 255 (659)
T ss_pred HHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 8998888899999997 8899999999999999999999999999998888887777775 8888877776666666777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHH
Q 000463 1104 RGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSF 1183 (1479)
Q Consensus 1104 ~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~ 1183 (1479)
.+++.+..+++.+......+.+.+.+.|.++|+.+||+|+.++...+++.+..++..+..........++....+++...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 335 (659)
T TIGR00954 256 LTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKY 335 (659)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 77777777888888888888999999999999999999999999888888877777777666666666666666665432
Q ss_pred HHH-HHHH-H-H-HHhcc----CCcChhH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhc
Q 000463 1184 TFC-LATL-F-M-ILLPS----SIIKPEN-VGLSLSY---GLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAW 1251 (1479)
Q Consensus 1184 ~~~-~~~~-~-~-v~~~~----~~~~~g~-vgl~l~y---~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~ 1251 (1479)
... +..+ . . +.... +.++.|. ++..++| ...+..++..+.....++.....+.+|+.++.+.++|...
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~ 415 (659)
T TIGR00954 336 TWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKS 415 (659)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 211 1111 1 1 22211 4566554 3434444 4566778888899999999999999999999876544210
Q ss_pred c------ccCCC--------C------CCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHH
Q 000463 1252 K------MEDRL--------P------PPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTL 1311 (1479)
Q Consensus 1252 ~------~~~~~--------~------~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTL 1311 (1479)
. .++.. + .......+.|+++||+++|+.+ +++|+|+||+|++||++||+|+||||||||
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTL 494 (659)
T TIGR00954 416 GNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSL 494 (659)
T ss_pred ccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHH
Confidence 0 00000 0 0001134679999999999744 359999999999999999999999999999
Q ss_pred HHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCccccccccHhhhcCCC--------CCCCHHHHHHHHHHcCc
Q 000463 1312 IQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPI--------GQYSDEEIWKSLERCQL 1383 (1479)
Q Consensus 1312 l~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~--------~~~sd~eI~~aL~~~~L 1383 (1479)
+++|.|+++|++|+|.+|+ |+++++|||+|.+|++|+|+|+... .+.++++++++++++++
T Consensus 495 l~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 563 (659)
T TIGR00954 495 FRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQL 563 (659)
T ss_pred HHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCC
Confidence 9999999999999999874 6789999999999999999999632 24678999999999999
Q ss_pred hHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccCh
Q 000463 1384 KDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRI 1463 (1479)
Q Consensus 1384 ~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl 1463 (1479)
++++.. |.|+||..+ .+.+||||||||++||||++++|++||||||||+||+++++.+++.+++. ++|+|+||||+
T Consensus 564 ~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~ 639 (659)
T TIGR00954 564 THILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRK 639 (659)
T ss_pred HHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCch
Confidence 999877 999999876 56799999999999999999999999999999999999999999999883 89999999999
Q ss_pred hhhhhcCEEEEEeC
Q 000463 1464 PTVMDCDRVIVVDA 1477 (1479)
Q Consensus 1464 ~ti~~~DrIlVL~~ 1477 (1479)
+++..||+|++|+.
T Consensus 640 ~~~~~~d~il~l~~ 653 (659)
T TIGR00954 640 SLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHhCCEEEEEeC
Confidence 99999999999974
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=592.83 Aligned_cols=466 Identities=17% Similarity=0.155 Sum_probs=354.4
Q ss_pred HHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 402 CTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMML-QLHAVWLMPLQISVALILLYNCLGASVITTVVGIIG 480 (1479)
Q Consensus 402 ~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~lal~lL~~~lG~s~l~gl~~~il 480 (1479)
..+-..+|++.++.+.....+...|+|+|.++.|++.+.+.+. .+..+....+.++.++++++..-.+.+++.+.++++
T Consensus 1031 ~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~ 1110 (1560)
T PTZ00243 1031 RNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYL 1110 (1560)
T ss_pred HHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555888999999999888899999999999999999998765 344455555555555554443222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000463 481 VMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMW- 559 (1479)
Q Consensus 481 ~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~~- 559 (1479)
...+..++.+..+..++.....+..-....+|.++|+++||.|++|+.|.++..+.-+...+...+.............
T Consensus 1111 ~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~ 1190 (1560)
T PTZ00243 1111 YYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEF 1190 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223334445555556666667777788999999999999999999998888755444333322111111111111111
Q ss_pred H-HHHHHHHHHHHHHH--HhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcc-cc---
Q 000463 560 S-TPVLISTLTFATAL--LFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVN-ES--- 632 (1479)
Q Consensus 560 ~-~p~~v~~~tF~~~~--l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~-~~--- 632 (1479)
. ....+.++.++++. .....++++.+..++.+...+..|+..+...+..+.++++|++||.+|++..+.++ ..
T Consensus 1191 l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~ 1270 (1560)
T PTZ00243 1191 LSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDE 1270 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccc
Confidence 1 11111112222222 12334788888888888888999999999999999999999999999996322110 00
Q ss_pred --------------------ccc-c-----cCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCCh
Q 000463 633 --------------------VER-V-----EGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGK 686 (1479)
Q Consensus 633 --------------------~~~-~-----~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGK 686 (1479)
.+. . +.....+.|+++|++|+|+++ .+++|+||||+|++||++||||++||||
T Consensus 1271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGK 1349 (1560)
T PTZ00243 1271 EVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGK 1349 (1560)
T ss_pred cccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCH
Confidence 000 0 001123579999999999643 3469999999999999999999999999
Q ss_pred HHHHHHHhcCcccCCcEEEECC-------------eEEEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHH
Q 000463 687 SSLLASILGEMHKISGKVKVCG-------------TTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLE 753 (1479)
Q Consensus 687 STLl~~llG~~~~~~G~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~ 753 (1479)
|||+++|+|+++|++|+|.++| .++||||+|.+|++||||||..+..++++...++++.|++.+.++
T Consensus 1350 STLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~ 1429 (1560)
T PTZ00243 1350 STLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVA 1429 (1560)
T ss_pred HHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHh
Confidence 9999999999999999999998 379999999999999999998776677788889999999999999
Q ss_pred hcccCCccccccCCCccchHHHHHHHHHHHHhcC-CCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccc
Q 000463 754 MMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD-CDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFL 832 (1479)
Q Consensus 754 ~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~-~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l 832 (1479)
.+|.|.+|.+||+|.+||||||||++||||++++ |+|+|||||||+||+++.+.|.+ .++...+++|+|+|+|+++.+
T Consensus 1430 ~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~-~L~~~~~~~TvI~IAHRl~ti 1508 (1560)
T PTZ00243 1430 SESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQA-TVMSAFSAYTVITIAHRLHTV 1508 (1560)
T ss_pred hCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHH-HHHHHCCCCEEEEEeccHHHH
Confidence 9999999999999999999999999999999996 89999999999999999998865 455556789999999999999
Q ss_pred ccCCEEEEEeCCEEEEecChHHHHhc-CcchHHHHHHh
Q 000463 833 HNVDLILVMREGMIVQSGRYNALLNS-GMDFGALVAAH 869 (1479)
Q Consensus 833 ~~~D~i~~l~~G~i~~~g~~~~l~~~-~~~f~~l~~~~ 869 (1479)
..||+|++|++|+|++.|+++|++++ ++.|.+++...
T Consensus 1509 ~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1509 AQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred HhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999999999974 78899887654
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-57 Score=568.19 Aligned_cols=184 Identities=23% Similarity=0.345 Sum_probs=159.2
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
-++++|++++|.. ..|+++||+|++||++||+|+||||||||+++|.|+.+|++|+|.++ .+++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 5899999999964 25999999999999999999999999999999999999999999986 1599
Q ss_pred EEcCcccc-ccccHhhhcCCC-CCC-CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCC
Q 000463 1347 IIPQEPVL-FEGTVRSNIDPI-GQY-SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHS 1423 (1479)
Q Consensus 1347 iIpQdp~L-F~gTIR~NLdp~-~~~-sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1423 (1479)
++||++.+ ++.|+++|+... ..+ .+..+.++++..++.+.....+ .+||||||||++|||||+++|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-----------~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNV-----------KDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCc-----------ccCCHHHHHHHHHHHHHhcCC
Confidence 99999875 466999999632 122 2345678888888876543332 358999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeC
Q 000463 1424 RLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDA 1477 (1479)
Q Consensus 1424 ~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~ 1477 (1479)
+||||||||++||.++...+.+.|++..+ ++|+|+|+|+++.+.. ||||++|++
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~ 529 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG 529 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 99999999999999999999999998743 7899999999999876 999999965
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-54 Score=544.33 Aligned_cols=511 Identities=17% Similarity=0.149 Sum_probs=368.3
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 322 LLR-CFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLI 400 (1479)
Q Consensus 322 l~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~ri 400 (1479)
+++ .+++.++++.++.++..++..+.|.+++.+++...... . ....+.+++++ +..++..-..+...+.+.++
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~--~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 84 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG--Q-GSLFSFGGLCL---LALLFRIGADIFPAYAGMHI 84 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--c-hHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 556 77888888889999999999999999998875321111 0 11111122222 22233333444456788888
Q ss_pred HHHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 401 RCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGIIG 480 (1479)
Q Consensus 401 R~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~~~~~~w~~plqi~lal~lL~~~lG~s~l~gl~~~il 480 (1479)
...+...+|+|.++++.....++++|+++|.++.|++.+.+++..+..+....+.+++++++++..-...+++.++++++
T Consensus 85 ~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~ 164 (555)
T TIGR01194 85 IANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIII 164 (555)
T ss_pred HHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88999999999999999888888999999999999999998876554544444444444444332211122222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 481 VMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWED--HFNKRILSFRESEFGWLTKFMYSISGNIIVM 558 (1479)
Q Consensus 481 ~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~--~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~ 558 (1479)
.+.+..+..++.++...+..+..++..+...|.++|++++|.++.|+ ...+++.+.-++-.+.-.+..........+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (555)
T TIGR01194 165 GTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFG 244 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445556666677777788888899999999999999999854 3333333222211111111111111111111
Q ss_pred HHHHHHHHHHHHHHHHH---hcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccc---
Q 000463 559 WSTPVLISTLTFATALL---FGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNES--- 632 (1479)
Q Consensus 559 ~~~p~~v~~~tF~~~~l---~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~--- 632 (1479)
...+.+ .++.+++ ..+.++.+.+++.+.+...+..|+..+...+..+.++++|++||.++++.++.++..
T Consensus 245 ~~~~~~----~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~ 320 (555)
T TIGR01194 245 QLLFFL----LIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELEL 320 (555)
T ss_pred HHHHHH----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 111111 1111111 124789999999999999999999999999999999999999999998642211000
Q ss_pred cccc-----cCCCCCccEEEEeeEEEecCCC--CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEE
Q 000463 633 VERV-----EGCDDNIAVEVRDGVFSWDDEN--GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVK 705 (1479)
Q Consensus 633 ~~~~-----~~~~~~~~i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~ 705 (1479)
.+.. +.......|+++|++|+|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 321 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~ 400 (555)
T TIGR01194 321 SDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEIL 400 (555)
T ss_pred cccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 0000 1011235699999999997532 23699999999999999999999999999999999999999999999
Q ss_pred ECCe-------------EEEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccch
Q 000463 706 VCGT-------------TAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSG 772 (1479)
Q Consensus 706 ~~g~-------------iayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 772 (1479)
++|. ++||+|+++++++|+++|+ ....++++.+++++.+++.++++.+|.|++|. .+|||
T Consensus 401 ~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSg 473 (555)
T TIGR01194 401 LDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALST 473 (555)
T ss_pred ECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCH
Confidence 9983 7999999999999999995 22334556667888888999999999999873 78999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhh-cCCcEEEEEccCCcccccCCEEEEEeCCEEEEe
Q 000463 773 GQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGA-LKGKTIILVTHQVDFLHNVDLILVMREGMIVQS 849 (1479)
Q Consensus 773 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~ 849 (1479)
|||||++||||++++|+++|||||||+||+++++++.+.+++.. .+|+|+|+|||+++.+..||+|++|++|++++.
T Consensus 474 Gq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999987766543 468999999999999989999999999999863
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-56 Score=500.93 Aligned_cols=525 Identities=21% Similarity=0.289 Sum_probs=377.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 336 LAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEG-YYLVLILLVAKFV--EVFSTHQFNFNSQKLGMLIRCTLITSLYRKG 412 (1479)
Q Consensus 336 ~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g-~~l~~~l~~~~~~--~~~~~~~~~~~~~~~g~riR~~L~~~Iy~K~ 412 (1479)
+..+.-++....|.+.+.+++-+..+..+.+.- +.++++.|+-... ..+..+.-.|..-++..----.+-..+|++.
T Consensus 223 ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHl 302 (790)
T KOG0056|consen 223 LLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHL 302 (790)
T ss_pred HHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHH
Confidence 333444455566999999998887554443322 2222222221111 1122222222222222222234556788888
Q ss_pred hcCChhhhccCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 000463 413 LRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQL-HAVWLMPLQISVALILLYNCLGASVITTVVGIIG---VMIFVVMG 488 (1479)
Q Consensus 413 L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~~~-~~~w~~plqi~lal~lL~~~lG~s~l~gl~~~il---~~~~~~~~ 488 (1479)
+.||-..--++.+||+...|.--...+. +..|+ ..+--..+.+++|+ .|..+-.-...|+++++. ...+...+
T Consensus 303 h~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~--vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~i 379 (790)
T KOG0056|consen 303 HNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAM--VYFFIKFNIWFGLIVFLMMLLYCYVTIKI 379 (790)
T ss_pred HhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhh--hhhhhhHhHHHHHHHHHHHHHHhheeeee
Confidence 8887755445577999988876666555 33332 22222223444444 344444344445444333 23333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 489 TKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDH----FNKRILSFRESEFGWLTKFMYSISGNIIVMWSTPVL 564 (1479)
Q Consensus 489 ~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~----f~~~I~~~R~~El~~l~k~~~~~a~~~~~~~~~p~~ 564 (1479)
...-.++|+++..+-.+--..-.+.|-|..++|.|+-|+. +.+.|.+.-+.|-+.+....++......++... +
T Consensus 380 TeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lg--l 457 (790)
T KOG0056|consen 380 TEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLG--L 457 (790)
T ss_pred ehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH--H
Confidence 5555666666544333322344577778999999998865 555566666666666555444443332222111 1
Q ss_pred HHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccccccCCCCCcc
Q 000463 565 ISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIA 644 (1479)
Q Consensus 565 v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~ 644 (1479)
....-+.+|....+.+|.+...-.+++.-.|.+|++.+.....++....+-.+|+.+.|++++...+.....|-....+.
T Consensus 458 l~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~ 537 (790)
T KOG0056|consen 458 LAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGK 537 (790)
T ss_pred hhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCe
Confidence 12223445555567799999888888899999999999999999999999999999999876532221111222234578
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-------------EE
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------TA 711 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------ia 711 (1479)
|+++|++|+|++ ++|+|+||||++++|+.+|+|||+|+||||+++.+.+.++..+|+|.++|+ ||
T Consensus 538 i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG 615 (790)
T KOG0056|consen 538 IEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG 615 (790)
T ss_pred EEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC
Confidence 999999999974 579999999999999999999999999999999999999999999999993 89
Q ss_pred EEeccCcCCCCcHHHHHhcCCCC--ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCC
Q 000463 712 YVAQTSWIQNGTIEENILFGLPM--NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCD 789 (1479)
Q Consensus 712 yv~Q~~~i~~~Tv~enI~fg~~~--~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 789 (1479)
.|||+..+||.||..||.+|+|- |++-| ++.+|....+.+-.+|+|..|.+||||-.||||+|||||+||++.++|.
T Consensus 616 VVPQDtvLFNdTI~yNIryak~~Asneevy-aAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 616 VVPQDTVLFNDTILYNIRYAKPSASNEEVY-AAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPS 694 (790)
T ss_pred cccCcceeecceeeeheeecCCCCChHHHH-HHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCc
Confidence 99999999999999999999874 45555 4567778888899999999999999999999999999999999999999
Q ss_pred EEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhc-CcchHHHHHH
Q 000463 790 IYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNS-GMDFGALVAA 868 (1479)
Q Consensus 790 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~-~~~f~~l~~~ 868 (1479)
|++|||.|||||.++.+.| +.++....+++|.|+|.|+++.+-+||.|++++||+|+|.|+++|++.+ ++.|+++.+.
T Consensus 695 iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~ 773 (790)
T KOG0056|consen 695 IILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQA 773 (790)
T ss_pred EEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHH
Confidence 9999999999999999998 5677777889999999999999999999999999999999999999987 8889988865
Q ss_pred h
Q 000463 869 H 869 (1479)
Q Consensus 869 ~ 869 (1479)
+
T Consensus 774 q 774 (790)
T KOG0056|consen 774 Q 774 (790)
T ss_pred H
Confidence 4
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-56 Score=529.06 Aligned_cols=438 Identities=24% Similarity=0.386 Sum_probs=335.1
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-------------
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------- 709 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------- 709 (1479)
..++++|++++|+ +.++|+||||++.+||++|++|.||+|||||+|.|.|.++|++|+|.++|+
T Consensus 7 ~ll~~~~i~K~Fg---gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 7 PLLELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ceeeeecceEEcC---CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 4689999999996 458999999999999999999999999999999999999999999999994
Q ss_pred -EEEEeccCcC-CCCcHHHHHhcCCCCChh----hHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHH
Q 000463 710 -TAYVAQTSWI-QNGTIEENILFGLPMNRA----KYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARA 783 (1479)
Q Consensus 710 -iayv~Q~~~i-~~~Tv~enI~fg~~~~~~----~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 783 (1479)
|+.|.|+.-+ ++.||.|||.+|.+.... .+++..+. ..+.++.+.... .......+||+||||-|+||||
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~--A~~~l~~lg~~~--~~~~~v~~LsiaqrQ~VeIArA 159 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR--ARELLARLGLDI--DPDTLVGDLSIAQRQMVEIARA 159 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHH--HHHHHHHcCCCC--ChhhhhhhCCHHHHHHHHHHHH
Confidence 7899999765 689999999998764331 11111111 112233332221 1556778999999999999999
Q ss_pred HhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecCh-HHHHhcCcc
Q 000463 784 VYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRY-NALLNSGMD 861 (1479)
Q Consensus 784 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~-~~l~~~~~~ 861 (1479)
++.+++|+|||||||+|+.+..+++|+.+.+...+|.++|+|||+++++.. ||||.||+||+.+..++. .++-
T Consensus 160 l~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~----- 234 (500)
T COG1129 160 LSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETS----- 234 (500)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCC-----
Confidence 999999999999999999999999998777777789999999999999865 999999999998854321 0000
Q ss_pred hHHHHHHhhhhhhhhhccccCCCCCCCCCCCCCccccccccccCCCcccccccccCCCchhhhHHHHhcCcchHHHHHHH
Q 000463 862 FGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIY 941 (1479)
Q Consensus 862 f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~y 941 (1479)
. ++++
T Consensus 235 ---------------------------------------~------------------~~lv------------------ 239 (500)
T COG1129 235 ---------------------------------------E------------------DELV------------------ 239 (500)
T ss_pred ---------------------------------------H------------------HHHH------------------
Confidence 0 0000
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 942 CTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQI 1021 (1479)
Q Consensus 942 ~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 1021 (1479)
+...
T Consensus 240 -~~Mv--------------------------------------------------------------------------- 243 (500)
T COG1129 240 -RLMV--------------------------------------------------------------------------- 243 (500)
T ss_pred -HHhh---------------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000463 1022 FFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANY 1101 (1479)
Q Consensus 1022 l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~ 1101 (1479)
|
T Consensus 244 ----------------------G--------------------------------------------------------- 244 (500)
T COG1129 244 ----------------------G--------------------------------------------------------- 244 (500)
T ss_pred ----------------------C---------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHH
Q 000463 1102 WYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLG 1181 (1479)
Q Consensus 1102 ~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~ 1181 (1479)
|+
T Consensus 245 ----------r~-------------------------------------------------------------------- 246 (500)
T COG1129 245 ----------RE-------------------------------------------------------------------- 246 (500)
T ss_pred ----------cc--------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCC
Q 000463 1182 SFTFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPN 1261 (1479)
Q Consensus 1182 ~~~~~~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~ 1261 (1479)
..+..++ + +..
T Consensus 247 ------------------------------------------------------------~~~~~~~-~--------~~~ 257 (500)
T COG1129 247 ------------------------------------------------------------LEDLFPE-P--------PEE 257 (500)
T ss_pred ------------------------------------------------------------hhhhccc-c--------ccc
Confidence 0000000 0 000
Q ss_pred CCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChh-h
Q 000463 1262 WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLH-D 1340 (1479)
Q Consensus 1262 wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~-~ 1340 (1479)
-+..-.++++|++..- .++|+||++++||.+||.|--|||+|-++++|||.-++.+|+|.+||.++.--+++ .
T Consensus 258 ~~~~~~l~v~~l~~~~------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~A 331 (500)
T COG1129 258 GIGEPVLEVRNLSGGG------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDA 331 (500)
T ss_pred CCCCcEEEEecCCCCC------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHH
Confidence 0112245677766532 58999999999999999999999999999999999999999999999988877766 5
Q ss_pred hhcceEEEcCccc---cc-cccHhhhcCCC--CCCCHH-HHHHHHHHcCchHHHHhCc---CCccccccCCCCCCCchHH
Q 000463 1341 LRSRFGIIPQEPV---LF-EGTVRSNIDPI--GQYSDE-EIWKSLERCQLKDVVAAKP---DKLDSLVADSGDNWSVGQR 1410 (1479)
Q Consensus 1341 LR~~i~iIpQdp~---LF-~gTIR~NLdp~--~~~sd~-eI~~aL~~~~L~~~i~~lp---~gLdt~v~e~G~nLSgGQr 1410 (1479)
.+..|+|||-|-- +| .-+|++|+... ..++.. -+...-++.-..+++..+. .+.+.+++ +||||.+
T Consensus 332 i~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~----~LSGGNQ 407 (500)
T COG1129 332 IKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG----TLSGGNQ 407 (500)
T ss_pred HHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhh----cCCchhh
Confidence 7888999998863 44 55999999632 111100 1223333333444555442 34445554 7999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1411 QLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1411 Qrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|+++|||+|..+|+||||||||.++|..+.+.|.+.|++.. +|.+||+|+-.++++.. ||||+||.+|+
T Consensus 408 QKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gr 478 (500)
T COG1129 408 QKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGR 478 (500)
T ss_pred hhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999876 57999999999999985 99999999996
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-52 Score=572.33 Aligned_cols=472 Identities=17% Similarity=0.184 Sum_probs=357.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 394 QKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMML-QLHAVWLMPLQISVALILLYNCLGASVI 472 (1479)
Q Consensus 394 ~~~g~riR~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~lal~lL~~~lG~s~l 472 (1479)
.+.+.+.-..+...++++.++.+.........|+|+|.++.|++.+.+.+. .+..+....+.+++++++++..-++.++
T Consensus 950 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l 1029 (1490)
T TIGR01271 950 VHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFI 1029 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777888999999999888889999999999999999998664 4445555555555555555443333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 473 TTVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSIS 552 (1479)
Q Consensus 473 ~gl~~~il~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a 552 (1479)
+.++++++...+..+..+..+..++.....+.......+|.++|+.+||.|+||+.|.++..+.-+...+..........
T Consensus 1030 ~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1109 (1490)
T TIGR01271 1030 AAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLR 1109 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333333444445555666666677778888999999999999999999999988876654432211111111111
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccc
Q 000463 553 GNIIVMWS-TPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNE 631 (1479)
Q Consensus 553 ~~~~~~~~-~p~~v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 631 (1479)
...+.... .-.++..+.+.. +.....+++.+-.++++...+..++..+...+..+..+.+|.+||.+|++.++..+.
T Consensus 1110 wl~~~~~~i~~~~~~~~~~l~--~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~ 1187 (1490)
T TIGR01271 1110 WFQMRIDIIFVFFFIAVTFIA--IGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPR 1187 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 11100000 001111111111 111234556666666667777888888888899999999999999999976433211
Q ss_pred ccc--------------c--ccC-CCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHh
Q 000463 632 SVE--------------R--VEG-CDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASIL 694 (1479)
Q Consensus 632 ~~~--------------~--~~~-~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ll 694 (1479)
..+ . .+. -+..+.|+++|++|+|+++ .+++|+|+||+|++||++||||++|||||||+++|+
T Consensus 1188 ~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~ 1266 (1490)
T TIGR01271 1188 PSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL 1266 (1490)
T ss_pred ccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 000 0 000 0123579999999999753 468999999999999999999999999999999999
Q ss_pred cCcccCCcEEEECC-------------eEEEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCcc
Q 000463 695 GEMHKISGKVKVCG-------------TTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQT 761 (1479)
Q Consensus 695 G~~~~~~G~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t 761 (1479)
|+++ .+|+|.++| +++|+||+|.+|++||||||....+++++...++++.|++.+.++.+|.|.+|
T Consensus 1267 rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt 1345 (1490)
T TIGR01271 1267 RLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDF 1345 (1490)
T ss_pred hhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcccccc
Confidence 9997 899999998 38999999999999999999766667778888999999999999999999999
Q ss_pred ccccCCCccchHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEE
Q 000463 762 EIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVM 841 (1479)
Q Consensus 762 ~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l 841 (1479)
.+||+|.+||||||||++||||++++|+|+|||||||+||+++.+.|.+. ++...+++|+|+|||+++.+..+|+|++|
T Consensus 1346 ~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~-L~~~~~~~TvI~IaHRl~ti~~~DrIlvL 1424 (1490)
T TIGR01271 1346 VLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKT-LKQSFSNCTVILSEHRVEALLECQQFLVI 1424 (1490)
T ss_pred ccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH-HHHHcCCCEEEEEecCHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999888755 44556789999999999999999999999
Q ss_pred eCCEEEEecChHHHHhcCcchHHHHHHhh
Q 000463 842 REGMIVQSGRYNALLNSGMDFGALVAAHE 870 (1479)
Q Consensus 842 ~~G~i~~~g~~~~l~~~~~~f~~l~~~~~ 870 (1479)
++|+|++.|+++++++.++.|.++++..+
T Consensus 1425 ~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1425 EGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred ECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 99999999999999988888998876544
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=483.28 Aligned_cols=527 Identities=20% Similarity=0.237 Sum_probs=421.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 317 PVRTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTS-GKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQK 395 (1479)
Q Consensus 317 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~ 395 (1479)
....+....+++.|+..+++..+-.++..+.|+.+-+.-|=+- +.+.+ .-..+.++....++++.+++.--.+...|
T Consensus 12 ~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~--TLv~Ltvlal~ly~~~glLd~iR~~~l~R 89 (580)
T COG4618 12 NLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVP--TLVMLTVLALGLYAFQGLLDAIRSRVLVR 89 (580)
T ss_pred chhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677888888888888888899999988776666443 22222 23455666667777888888888888999
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 396 LGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMML-----QLHAVWLMPLQISVALILLYNCLGAS 470 (1479)
Q Consensus 396 ~g~riR~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~-----~~~~~w~~plqi~lal~lL~~~lG~s 470 (1479)
+|.++-..|..-||.-+++.....+......+.+ .|.+.+..|+. -+.+.--+|+-+.++ |++.-.+|+-
T Consensus 90 ig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~-fl~Hp~lG~~ 164 (580)
T COG4618 90 IGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVI-FLFHPWLGLI 164 (580)
T ss_pred HHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchHHHHHHHH-HHHHHHHHHH
Confidence 9999999999999999975554443322233443 37777777664 233443358755554 4666689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 471 VITTVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYS 550 (1479)
Q Consensus 471 ~l~gl~~~il~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~ 550 (1479)
+++|.++++++..+|-..+++- -++-.+..-+|....+-.++|..+|+.+|..+...++-.+...+-+++..+....
T Consensus 165 a~~ga~iLv~la~ln~~~t~~p---~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~ 241 (580)
T COG4618 165 ALAGAIILVVLALLNERATRKP---LKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDR 241 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999998888887766543 3444566777888899999999999999999998888888777777766665544
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 000463 551 ISGNIIVMWSTPVLI--STLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSREL 628 (1479)
Q Consensus 551 ~a~~~~~~~~~p~~v--~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~ 628 (1479)
......+.-..-.+. .+...+.|..+++++|++.++..--+..-.-.|+........++..++.|.+|++++|.....
T Consensus 242 ~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~ 321 (580)
T COG4618 242 NGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPA 321 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 433332222222222 334566677778899999999887777777789999999999999999999999999986543
Q ss_pred cccccccccCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC
Q 000463 629 VNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG 708 (1479)
Q Consensus 629 ~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g 708 (1479)
... +.+.+..+..+.++++++.-+ ..++|+|+||||++++||-++|+||+|||||||.++|.|..+|++|.|+++|
T Consensus 322 ~~~---~m~LP~P~g~L~Ve~l~~~PP-g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDg 397 (580)
T COG4618 322 AAE---RMPLPAPQGALSVERLTAAPP-GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDG 397 (580)
T ss_pred ccC---CCCCCCCCceeeEeeeeecCC-CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecc
Confidence 332 233344567899999999765 4467999999999999999999999999999999999999999999999998
Q ss_pred -------------eEEEEeccCcCCCCcHHHHHh-cCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHH
Q 000463 709 -------------TTAYVAQTSWIQNGTIEENIL-FGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQ 774 (1479)
Q Consensus 709 -------------~iayv~Q~~~i~~~Tv~enI~-fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 774 (1479)
+|||.||+-.+|.|||.|||. |+.+.|.++.-+..+..+.++-+-.+|+|++|.||+.|.+|||||
T Consensus 398 a~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQ 477 (580)
T COG4618 398 ADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQ 477 (580)
T ss_pred hhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchH
Confidence 599999999999999999996 665666665555556666777788999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHH
Q 000463 775 KQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNA 854 (1479)
Q Consensus 775 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~ 854 (1479)
||||+||||+|.||.+++||||-|+||.+....+.+.+.....+|.|+|+|||+++.+..+|+|++|+||++...|+.+|
T Consensus 478 RQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~e 557 (580)
T COG4618 478 RQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREE 557 (580)
T ss_pred HHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHH
Confidence 99999999999999999999999999999999998777677778999999999999999999999999999999999998
Q ss_pred HHh
Q 000463 855 LLN 857 (1479)
Q Consensus 855 l~~ 857 (1479)
+++
T Consensus 558 VLa 560 (580)
T COG4618 558 VLA 560 (580)
T ss_pred HHH
Confidence 875
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-52 Score=527.39 Aligned_cols=501 Identities=17% Similarity=0.185 Sum_probs=353.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 318 VRTTLLRCFWKEVAFTAFLAIVRLCVMYVG-PVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKL 396 (1479)
Q Consensus 318 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 396 (1479)
+++.+++.+++.++...++.++..++..+. |++.+.+++.+.+ . ...-+.+++.+++..+ +.....+...++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 75 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-S--LLVLPEFLGLLLLLMA----VTLGSQLALTTL 75 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-c--chHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 566778888888888888888888888774 6777888876532 1 1111111111111111 112233344566
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 397 GMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVV 476 (1479)
Q Consensus 397 g~riR~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~~~~~~w~~plqi~lal~lL~~~lG~s~l~gl~ 476 (1479)
+.++...+...+|+|.++++.....++.+|+++|.++.|++.+..++..+..++...+.+++++++++..-+..+++.++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 67777778889999999999988888999999999999999999876666677777777777776665433334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc--h----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 477 GIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQA--W----EDHFNKRILSFRESEFGWLTKFMYS 550 (1479)
Q Consensus 477 ~~il~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~--w----E~~f~~~I~~~R~~El~~l~k~~~~ 550 (1479)
++++.+.+...+.++.++..++.++..+++.+.++|.++|++++++.+ . ++.|.+...+.++...+..+ .
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 231 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADT----F 231 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHH----H
Confidence 444455566677788888888899999999999999999999998533 2 33343433333333332211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC---ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000463 551 ISGNIIVMWSTPVLISTLTFATALLFGV---PLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRE 627 (1479)
Q Consensus 551 ~a~~~~~~~~~p~~v~~~tF~~~~l~~~---~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e 627 (1479)
........ .++..+.++.+.+.++ ..+.+.+.....+...+..|+..+...+..+.+++++.+||.+++..++
T Consensus 232 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~ 307 (547)
T PRK10522 232 HLSAVNWS----NIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPY 307 (547)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 11111110 1111111222222221 1122222222222233668999999999999999999999999986543
Q ss_pred CcccccccccCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEEC
Q 000463 628 LVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVC 707 (1479)
Q Consensus 628 ~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~ 707 (1479)
.++.. +..+. +....++++|++|+|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++
T Consensus 308 ~~~~~-~~~~~-~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~ 383 (547)
T PRK10522 308 KAEFP-RPQAF-PDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLD 383 (547)
T ss_pred ccccc-ccccc-CcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 22111 11111 11246999999999973 3469999999999999999999999999999999999999999999998
Q ss_pred C-------------eEEEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCcccccc---CCCccc
Q 000463 708 G-------------TTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGE---RGINLS 771 (1479)
Q Consensus 708 g-------------~iayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~---~g~~LS 771 (1479)
| .++|++|+|.++++|++|| +...+++..++.++.+++..++ ..++ +|.+||
T Consensus 384 g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~G~~LS 451 (547)
T PRK10522 384 GKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKL---------ELEDGRISNLKLS 451 (547)
T ss_pred CEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhh---------hccccCCCCCCCC
Confidence 7 3799999999999999999 3333444444444444444333 2333 378999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCcccccCCEEEEEeCCEEEEe
Q 000463 772 GGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHNVDLILVMREGMIVQS 849 (1479)
Q Consensus 772 GGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~ 849 (1479)
||||||++||||++++|+++|||||||+||+++++.+.+.+.+... +++|+|+|||+++.+..||+|++|++|++++.
T Consensus 452 gGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 452 KGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999877654433 58999999999999999999999999999875
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=492.47 Aligned_cols=441 Identities=24% Similarity=0.421 Sum_probs=339.3
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-------------
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------- 709 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------- 709 (1479)
..++++++++.|+ +..+++||||++++||++|++|+||+|||||+++|.|.++|++|+|.++|+
T Consensus 3 ~~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 4789999999996 467999999999999999999999999999999999999999999999995
Q ss_pred -EEEEeccCcC-CCCcHHHHHhcCCCCChh---hHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHH
Q 000463 710 -TAYVAQTSWI-QNGTIEENILFGLPMNRA---KYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAV 784 (1479)
Q Consensus 710 -iayv~Q~~~i-~~~Tv~enI~fg~~~~~~---~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 784 (1479)
||+|.|++-+ .+.||.|||..|.+.... .+.++.+ .+.+-.+ ..|..-...++..+||-||||||.|-+||
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~--~i~~l~~--~yGl~vdp~~~V~dLsVG~qQRVEIlKaL 155 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA--RIKELSE--RYGLPVDPDAKVADLSVGEQQRVEILKAL 155 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHH--HHHHHHH--HhCCCCCccceeecCCcchhHHHHHHHHH
Confidence 7999999876 578999999999864210 1111111 1111111 22334445577889999999999999999
Q ss_pred hcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhcCcchH
Q 000463 785 YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNSGMDFG 863 (1479)
Q Consensus 785 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~~~~f~ 863 (1479)
|++|+++|||||||.|-|...+++|+.+.+....|+|||+|||.++++.. ||++.||++|+++. +++..
T Consensus 156 yr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg--t~~~~-------- 225 (501)
T COG3845 156 YRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG--TVDPV-------- 225 (501)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe--eecCC--------
Confidence 99999999999999999999999998887777889999999999999876 99999999999763 21100
Q ss_pred HHHHHhhhhhhhhhccccCCCCCCCCCCCCCccccccccccCCCcccccccccCCCchhhhHHHHhcCcchHHHHHHHHH
Q 000463 864 ALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGNSKLIKEEERETGKVGLHVYKIYCT 943 (1479)
Q Consensus 864 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~y~~ 943 (1479)
.+. ..+|-
T Consensus 226 ---------------------------~~~-----------------------------t~~el---------------- 233 (501)
T COG3845 226 ---------------------------AET-----------------------------TEEEL---------------- 233 (501)
T ss_pred ---------------------------CCC-----------------------------CHHHH----------------
Confidence 000 00000
Q ss_pred HhhhhHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 944 EAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFF 1023 (1479)
Q Consensus 944 ~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~ 1023 (1479)
+
T Consensus 234 -a------------------------------------------------------------------------------ 234 (501)
T COG3845 234 -A------------------------------------------------------------------------------ 234 (501)
T ss_pred -H------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000463 1024 SQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWY 1103 (1479)
Q Consensus 1024 ~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~ 1103 (1479)
T Consensus 235 -------------------------------------------------------------------------------- 234 (501)
T COG3845 235 -------------------------------------------------------------------------------- 234 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHH
Q 000463 1104 RGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSF 1183 (1479)
Q Consensus 1104 ~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~ 1183 (1479)
++
T Consensus 235 ------------~l------------------------------------------------------------------ 236 (501)
T COG3845 235 ------------EL------------------------------------------------------------------ 236 (501)
T ss_pred ------------HH------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCC
Q 000463 1184 TFCLATLFMILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWP 1263 (1479)
Q Consensus 1184 ~~~~~~~~~v~~~~~~~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp 1263 (1479)
+ +... +. .+. + .++.-|
T Consensus 237 --------M--vG~~-v~-------------------------------------------~~~------~---~~~~~p 253 (501)
T COG3845 237 --------M--VGRE-VV-------------------------------------------LRV------V---KPPSTP 253 (501)
T ss_pred --------h--cCCc-cc-------------------------------------------ccc------c---cCCCCC
Confidence 0 0000 00 000 0 011123
Q ss_pred CCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEec-CCCChhhhh
Q 000463 1264 AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDI-SLLGLHDLR 1342 (1479)
Q Consensus 1264 ~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI-~~i~l~~LR 1342 (1479)
..--++++|+++.-+.+ -..+++|||++++||.+||.|-.|.|-+.|+.+|.|+..|.+|+|.++|.|+ ...+....|
T Consensus 254 g~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 254 GEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 34468999999986544 3479999999999999999999999999999999999999999999999997 677888876
Q ss_pred c-ceEEEcCccc----cccccHhhhcCCCCC----------CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCc
Q 000463 1343 S-RFGIIPQEPV----LFEGTVRSNIDPIGQ----------YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSV 1407 (1479)
Q Consensus 1343 ~-~i~iIpQdp~----LF~gTIR~NLdp~~~----------~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSg 1407 (1479)
+ .+++||.|.+ ..+-|+.||+-+... .+-.++.+..++. +.+| .-.+.+.++++ .+|||
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~l-i~~f-dVr~~~~~~~a----~~LSG 406 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAREL-IEEF-DVRAPSPDAPA----RSLSG 406 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHH-HHHc-CccCCCCCcch----hhcCC
Confidence 5 5999999984 567799999853211 1224444333221 1111 11133444444 47999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1408 GQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1408 GQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|+.|++-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. +|+.|++|+-+|+.+.. ||||.||.+|+
T Consensus 407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gr 480 (501)
T COG3845 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGR 480 (501)
T ss_pred cceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCc
Confidence 99999999999999999999999999999999999999888875 68899999999999988 99999999996
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=525.30 Aligned_cols=497 Identities=19% Similarity=0.231 Sum_probs=362.4
Q ss_pred hhhhhhhcccccccCCCC---CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeccc
Q 000463 965 LMAGDYWLSYETSEDHSM---SFNPSLFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTT 1041 (1479)
Q Consensus 965 ~~~~~~wl~~~~~~~~~~---~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~ 1041 (1479)
...++..+....+....+ ......|.....+..++..++.--..+.....|.+.-..+-..++++.+|..-.--...
T Consensus 217 ~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~ 296 (1381)
T KOG0054|consen 217 GFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGET 296 (1381)
T ss_pred ccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCC
Confidence 555666665443321111 11112233333333344444444444555677888888888889999999988877788
Q ss_pred CchhhHHHHhchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 1042 PSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITC-QYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSI 1120 (1479)
Q Consensus 1042 ~~G~ilnR~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~ 1120 (1479)
+.|+|+|-++.|.+.+++.....-...... ++++..+.++. ...|.. ++.+.++++++-++.+..+..+..++....
T Consensus 297 t~G~ivNlms~D~~ri~~~~~~~h~~w~~P-lqi~~~l~lLy~~LG~sa-~~G~~~~il~~p~n~~~a~~~~~~q~~~m~ 374 (1381)
T KOG0054|consen 297 TVGEIVNLMSVDAQRLSDAACFLHLLWSAP-LQIILALYLLYGLLGPSA-LAGVAVMVLLIPLNSFLAKKIAKFQKRLMK 374 (1381)
T ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998776543333322 23222222221 222221 122222233333333333333344444444
Q ss_pred hhhhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 000463 1121 TKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSII 1200 (1479)
Q Consensus 1121 ~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~ 1200 (1479)
.+..-....+|.++|+++||.|+||+.|.++..+..++..+.............+.......++.+++....+....+.+
T Consensus 375 ~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~l 454 (1381)
T KOG0054|consen 375 RKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLL 454 (1381)
T ss_pred hhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc
Confidence 45555667899999999999999999999887776665554443333333333322222222222222222221335567
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCccEEEEeeeeeecCC
Q 000463 1201 KPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSN 1280 (1479)
Q Consensus 1201 ~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~ 1280 (1479)
+|..+-.++++.-.+..++..+-.....+-+..+|++|+++|+..++..+...+. .+.-+.+-.|+++|.+|+..++
T Consensus 455 t~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~~~sfsW~~~ 531 (1381)
T KOG0054|consen 455 TASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER---SPDEAGENAIEIKNGSFSWDSE 531 (1381)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc---CCCCCCCceEEEeeeeEecCCC
Confidence 7777777778777777788777777888888899999999999766543322211 1222344579999999999763
Q ss_pred -CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCccccccccH
Q 000463 1281 -TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTV 1359 (1479)
Q Consensus 1281 -~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTI 1359 (1479)
.++.|+||||+|++||.+||||++|||||||+++|+|-.+..+|++.++|. ++|+||.|-+|+|||
T Consensus 532 ~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------------iaYv~Q~pWI~ngTv 598 (1381)
T KOG0054|consen 532 SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------------VAYVPQQPWIQNGTV 598 (1381)
T ss_pred CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-------------EEEeccccHhhCCcH
Confidence 445999999999999999999999999999999999999999999999984 999999999999999
Q ss_pred hhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHh
Q 000463 1360 RSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439 (1479)
Q Consensus 1360 R~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~T 1439 (1479)
||||-...+++++.-.++++.|+|++.++.+|.|=.|.|||+|.||||||||||+||||++++++|.+||.|-|+||.++
T Consensus 599 reNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahv 678 (1381)
T KOG0054|consen 599 RENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHV 678 (1381)
T ss_pred HHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhh
Confidence 99998888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1440 DAEI-QRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1440 e~~I-q~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
.+.| .+.|+...+++|+|.+||.++.+.+||+|+||++|+
T Consensus 679 g~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~ 719 (1381)
T KOG0054|consen 679 GKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGK 719 (1381)
T ss_pred hHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCe
Confidence 8776 677877889999999999999999999999999996
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-49 Score=504.83 Aligned_cols=504 Identities=15% Similarity=0.162 Sum_probs=368.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 329 EVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYY-LVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITS 407 (1479)
Q Consensus 329 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~-l~~~l~~~~~~~~~~~~~~~~~~~~~g~riR~~L~~~ 407 (1479)
.++...++.++.+.+....|++++.+++.+.+.+. ..+. +...+++..++.+++..-..|...++..++|.-+...
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~---~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 173 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSP---RNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRY 173 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778888899999999999999998765432 1111 0111222223333344444455667777788888877
Q ss_pred HHHHHhcCCh----hhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000463 408 LYRKGLRLSC----SARQAHGVGQIVNYMAVDAQQLSDMML-QLHAVWLMPLQISVALILLYNCLGASVIT-TVVGIIGV 481 (1479)
Q Consensus 408 Iy~K~L~ls~----~~~~~~~~G~ivnlms~D~~ri~~~~~-~~~~~w~~plqi~lal~lL~~~lG~s~l~-gl~~~il~ 481 (1479)
++++.+.--. ...++ .+|++.+.++.|++.+.+.+. .+..+...++.++.+++.|+..+++.... .++.+++.
T Consensus 174 l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~ 252 (659)
T TIGR00954 174 LYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFAT 252 (659)
T ss_pred HHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 7777766321 11122 479999999999999998765 34455566677777777787767765433 33344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 482 MIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMWST 561 (1479)
Q Consensus 482 ~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~El~~l~k~~~~~a~~~~~~~~~ 561 (1479)
+.+..++.+...+..++..+..++-....+|.++|+++||.|+-|+.+.++..+.-++-.+..++.....+....+....
T Consensus 253 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 332 (659)
T TIGR00954 253 GVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIV 332 (659)
T ss_pred HHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 55666777888888888888888888999999999999999999998888876655555555555444444333222222
Q ss_pred H----HHHHHHHHHHHHHh--c---CccCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 000463 562 P----VLISTLTFATALLF--G---VPLDAGSVFTT----TTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSREL 628 (1479)
Q Consensus 562 p----~~v~~~tF~~~~l~--~---~~Lt~~~vFt~----lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~ 628 (1479)
. ..+..+..+..++. | +.+|.+..+.. ..++..+..|+..+...+..+.++.++.+||.++++.++.
T Consensus 333 ~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~ 412 (659)
T TIGR00954 333 AKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDD 412 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11222222222222 1 46887764442 3346677899999999999999999999999999975321
Q ss_pred cc------ccccc-----------------ccCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCC
Q 000463 629 VN------ESVER-----------------VEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSG 685 (1479)
Q Consensus 629 ~~------~~~~~-----------------~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsG 685 (1479)
.. ..... .........|+++|++|.|++ ++++|+|+||++++||+++|+||||||
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGsG 490 (659)
T TIGR00954 413 VKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGCG 490 (659)
T ss_pred HhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceEEECCCCEEEEECCCCCC
Confidence 10 00000 000012346999999999963 347999999999999999999999999
Q ss_pred hHHHHHHHhcCcccCCcEEEECC--eEEEEeccCcCCCCcHHHHHhcCCC--------CChhhHHHHHHHhchHHHHHhc
Q 000463 686 KSSLLASILGEMHKISGKVKVCG--TTAYVAQTSWIQNGTIEENILFGLP--------MNRAKYGEVVRVCCLEKDLEMM 755 (1479)
Q Consensus 686 KSTLl~~llG~~~~~~G~i~~~g--~iayv~Q~~~i~~~Tv~enI~fg~~--------~~~~~~~~v~~~~~l~~dl~~l 755 (1479)
||||+++|+|+++|++|+|.+++ +++||||+|+++++|++|||.++.. .++++..+.++.+++.+.++.
T Consensus 491 KSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~- 569 (659)
T TIGR00954 491 KSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER- 569 (659)
T ss_pred HHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-
Confidence 99999999999999999999865 6999999999999999999998742 233455667777888776766
Q ss_pred ccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccC
Q 000463 756 EYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNV 835 (1479)
Q Consensus 756 ~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~ 835 (1479)
+.|.+|..+ .+.+||||||||++||||++++|+++|||||||+||+++.+.+.+.+.+ .|+|+|+|||+++.++.|
T Consensus 570 ~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~~~~ 645 (659)
T TIGR00954 570 EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLWKYH 645 (659)
T ss_pred cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHHHhC
Confidence 888888765 5779999999999999999999999999999999999999988765433 389999999999999899
Q ss_pred CEEEEEeC
Q 000463 836 DLILVMRE 843 (1479)
Q Consensus 836 D~i~~l~~ 843 (1479)
|++++|++
T Consensus 646 d~il~l~~ 653 (659)
T TIGR00954 646 EYLLYMDG 653 (659)
T ss_pred CEEEEEeC
Confidence 99999973
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-50 Score=460.49 Aligned_cols=213 Identities=40% Similarity=0.771 Sum_probs=206.3
Q ss_pred ccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcce
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRF 1345 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1345 (1479)
|.|+|+|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|+|||+|+.+++.+++|++|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 5799999999998656679999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEEcCccccccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCE
Q 000463 1346 GIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRL 1425 (1479)
Q Consensus 1346 ~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~I 1425 (1479)
++|||+|.+|++|+++|++|++..+++++|++++.+++.+++..+|++||+.++|+|.+||+|||||+|||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998877889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1426 LFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1426 LiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|||||||++||+++++.+++.|++.+++||||+||||++++..||||+||++|+
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~ 213 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENK 213 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCe
Confidence 999999999999999999999999888999999999999999999999999996
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=432.23 Aligned_cols=459 Identities=21% Similarity=0.280 Sum_probs=351.8
Q ss_pred HHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 403 TLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLH-AVWLMPLQISVALILLYNCLGASVITTVVGIIGV 481 (1479)
Q Consensus 403 ~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~~~~-~~w~~plqi~lal~lL~~~lG~s~l~gl~~~il~ 481 (1479)
.+.-..|++.+.||-.-..+..+|.+---|.--..-|+...+++- .+.-..+++.+...++|...||...+..++++++
T Consensus 16 ~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~l 95 (497)
T COG5265 16 VLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVIL 95 (497)
T ss_pred HHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 445567888888877655555566654444444444555554432 2333457889999999999998776666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHhchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 000463 482 MIFVVMGTKRNNRFQFNVMKNRDSRMK-ATNEMLNYMRVIKFQAWEDHFNKRILSFRES----EFGWLTKFMYSISGNII 556 (1479)
Q Consensus 482 ~~~~~~~~~~~~~~q~~~m~~~D~R~~-~~sEiL~~Ik~IKl~~wE~~f~~~I~~~R~~----El~~l~k~~~~~a~~~~ 556 (1479)
..+-.+...--+.-.++.|+..|...+ ...+.|-|-.++|.|+-|+.+.++-....+. +++.......+......
T Consensus 96 Y~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~ 175 (497)
T COG5265 96 YLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTA 175 (497)
T ss_pred HHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 544443333333444556776676654 4568899999999999998877776554443 33332222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccccc
Q 000463 557 VMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERV 636 (1479)
Q Consensus 557 ~~~~~p~~v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~ 636 (1479)
++... +....+-+..-...+.+|.+...-.-++...+..|++.+......+-|+++..+++.+.+..+-...+.....
T Consensus 176 I~~~~--l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~ 253 (497)
T COG5265 176 IFSTG--LRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAP 253 (497)
T ss_pred HHHHH--HHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCc
Confidence 22111 1112223333345678999999999999999999999999999999999999999999887653322221111
Q ss_pred cCC-CCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe------
Q 000463 637 EGC-DDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------ 709 (1479)
Q Consensus 637 ~~~-~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------ 709 (1479)
+-. .....+.+++++|.|++ .+++|+++||++++|+.++++|++|+||||+++.|.+++++.+|.|.++|+
T Consensus 254 ~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vt 331 (497)
T COG5265 254 PLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVT 331 (497)
T ss_pred cccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhH
Confidence 111 23467999999999974 468999999999999999999999999999999999999999999999994
Q ss_pred -------EEEEeccCcCCCCcHHHHHhcCCCCC-hhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHH
Q 000463 710 -------TAYVAQTSWIQNGTIEENILFGLPMN-RAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLA 781 (1479)
Q Consensus 710 -------iayv~Q~~~i~~~Tv~enI~fg~~~~-~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 781 (1479)
||.|||+.-+||.|+..||.+|.|.- .+......++.++...++.+|+|.+|.+||+|-.|||||||||++|
T Consensus 332 q~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaia 411 (497)
T COG5265 332 QQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIA 411 (497)
T ss_pred HHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHH
Confidence 79999999999999999999998742 3334456777788888999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcCcc
Q 000463 782 RAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMD 861 (1479)
Q Consensus 782 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~ 861 (1479)
|++.++|+|++|||.|||||.|+.+.|-. .++...+|+|.+++.|+++.+-.||.|+||++|+|+|.|+++|++..++.
T Consensus 412 r~ilk~p~il~~deatsaldt~te~~iq~-~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g~ 490 (497)
T COG5265 412 RTILKNPPILILDEATSALDTHTEQAIQA-ALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGL 490 (497)
T ss_pred HHHhcCCCEEEEehhhhHhhhhHHHHHHH-HHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCCh
Confidence 99999999999999999999999998854 45666789999999999999999999999999999999999999999998
Q ss_pred hHHHH
Q 000463 862 FGALV 866 (1479)
Q Consensus 862 f~~l~ 866 (1479)
|+++.
T Consensus 491 ya~mw 495 (497)
T COG5265 491 YAEMW 495 (497)
T ss_pred HHHHh
Confidence 88764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=448.40 Aligned_cols=242 Identities=24% Similarity=0.420 Sum_probs=206.7
Q ss_pred HHhhhHHHHHHhhcCccchhcccc------CC---CCCCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEE
Q 000463 1231 NRMVSVERIKQFTEIPSEAAWKME------DR---LPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVV 1301 (1479)
Q Consensus 1231 ~~~~sveRi~~~~~~~~E~~~~~~------~~---~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIV 1301 (1479)
..+.+++|+.+|...+.|.....+ +. ..+..||..|.|+|+|++++|+.+.+++|+|+||+|++||++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~Iv 114 (329)
T PRK14257 35 QKLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFI 114 (329)
T ss_pred hccccccchhhHHhcccccchhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEE
Confidence 346677777777766555332111 10 113469999999999999999865567999999999999999999
Q ss_pred CCCCCCHHHHHHHHhccCC-----CCccEEEEcCEecC--CCChhhhhcceEEEcCccccccccHhhhcC--C-CCCCCH
Q 000463 1302 GRTGSGKSTLIQVFFRLVE-----PSGGRIIIDGIDIS--LLGLHDLRSRFGIIPQEPVLFEGTVRSNID--P-IGQYSD 1371 (1479)
Q Consensus 1302 GrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~--~i~l~~LR~~i~iIpQdp~LF~gTIR~NLd--p-~~~~sd 1371 (1479)
||||||||||+++|+|+++ |.+|+|.|||+|+. ++++.++|+++++|||+|.+|++|+++||+ | +..+++
T Consensus 115 G~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~ 194 (329)
T PRK14257 115 GPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGIND 194 (329)
T ss_pred CCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCCh
Confidence 9999999999999999997 57999999999997 456788999999999999999999999998 3 233555
Q ss_pred HHH-----HHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHH
Q 000463 1372 EEI-----WKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRI 1446 (1479)
Q Consensus 1372 ~eI-----~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~ 1446 (1479)
++. .++++.+++. .++++.+++.|.+||||||||+|||||++++|+||||||||++||+++++.+++.
T Consensus 195 ~~~~~~~~~~~l~~~~L~-------~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~ 267 (329)
T PRK14257 195 RKILEKIVEKSLKSAALW-------DEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEEL 267 (329)
T ss_pred HHHHHHHHHHHHHHcCCc-------chhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 554 5566777764 3456788999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1447 IREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1447 I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++.++++|+|+||||++++.+ ||||+||++|+
T Consensus 268 i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~ 301 (329)
T PRK14257 268 ILELKKKYSIIIVTHSMAQAQRISDETVFFYQGW 301 (329)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999998 99999999995
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-46 Score=430.33 Aligned_cols=189 Identities=21% Similarity=0.342 Sum_probs=159.2
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.|.++||+|+|.++. ..+++++|-|.++++|++|||||+|||||++++.+.+.|..|.|.-.-.. +++
T Consensus 389 vi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KLP 456 (614)
T ss_pred eEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cch
Confidence 599999999998765 78999999999999999999999999999999999999999988654222 233
Q ss_pred EEcCc---cccccccHhhhcCC-CC-CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhcc
Q 000463 1347 IIPQE---PVLFEGTVRSNIDP-IG-QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLK 1421 (1479)
Q Consensus 1347 iIpQd---p~LF~gTIR~NLdp-~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1421 (1479)
..-|. -..++-|.-+|+.| +. .-..+++...|.++||....+..|- ++||+|||.|+++||++++
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHhc
Confidence 33333 34566677777755 33 3567889999999999865554443 3699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1422 HSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1422 ~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+|.||||||||++||.+|-....++|.+. +.+||+|+|+...|.. +++|++.++|.
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~ 583 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGT 583 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCc
Confidence 99999999999999999999999999873 6789999999999988 89999888763
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=425.73 Aligned_cols=264 Identities=23% Similarity=0.331 Sum_probs=220.1
Q ss_pred cCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccccccCCCCCccEEEEeeEEEecC
Q 000463 577 GVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDD 656 (1479)
Q Consensus 577 ~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~ 656 (1479)
.++++|+++|+++++|+.+..|+..+|..... .+|+++|+..+|.+...+.. ..+....|+++|++++|++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~nls~~y~~ 92 (329)
T PRK14257 22 LNELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--DFNHANVFEIRNFNFWYMN 92 (329)
T ss_pred cchhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--CCCcCceEEEEeeEEEecC
Confidence 35699999999999999999999988876543 57999999887754322111 1123468999999999964
Q ss_pred CCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcc-----cCCcEEEECC---------------eEEEEecc
Q 000463 657 ENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH-----KISGKVKVCG---------------TTAYVAQT 716 (1479)
Q Consensus 657 ~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~i~~~g---------------~iayv~Q~ 716 (1479)
..+++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++| .++|+||+
T Consensus 93 -~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~ 171 (329)
T PRK14257 93 -RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQK 171 (329)
T ss_pred -CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecC
Confidence 23579999999999999999999999999999999999996 5799998755 48999999
Q ss_pred CcCCCCcHHHHHhcCCCCC----hh----hHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCC
Q 000463 717 SWIQNGTIEENILFGLPMN----RA----KYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDC 788 (1479)
Q Consensus 717 ~~i~~~Tv~enI~fg~~~~----~~----~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 788 (1479)
||++++|++|||.|+..++ ++ .+.+.++.|++..++ .+.+++++.+|||||||||+||||++++|
T Consensus 172 ~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l-------~~~~~~~~~~LSgGqkqRl~LARAl~~~p 244 (329)
T PRK14257 172 PTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV-------KDDLDKAGNALSGGQQQRLCIARAIALEP 244 (329)
T ss_pred CccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-------hhhhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 9999999999999875322 22 144556666654433 35688999999999999999999999999
Q ss_pred CEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000463 789 DIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 789 ~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
+|+||||||++||+++.+++. +++..+.+++|+|+|||+++++.. ||+|++|++|+|++.|+++++.+.
T Consensus 245 ~IlLLDEPts~LD~~~~~~i~-~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 245 EVLLMDEPTSALDPIATAKIE-ELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred CEEEEeCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999865 566666678999999999999887 999999999999999999998753
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-44 Score=373.67 Aligned_cols=207 Identities=29% Similarity=0.428 Sum_probs=174.0
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe--------------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------- 709 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------- 709 (1479)
.|+++|++++|. +..+|+|||++|++||.++|+||+||||||||++|.|+.+|++|+|.++|.
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 589999999995 457999999999999999999999999999999999999999999999992
Q ss_pred EEEEeccCcCC-CCcHHHHHhcCCCCCh--hhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhc
Q 000463 710 TAYVAQTSWIQ-NGTIEENILFGLPMNR--AKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQ 786 (1479)
Q Consensus 710 iayv~Q~~~i~-~~Tv~enI~fg~~~~~--~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 786 (1479)
+|+|+|+..+| ..||-|||..+.-.-. .+-+..-+|- +-++.....| .....+.+|||||||||||||||+.
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~---~lL~~VGL~~--ka~~yP~qLSGGQqQRVAIARALaM 153 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKAL---ELLEKVGLAD--KADAYPAQLSGGQQQRVAIARALAM 153 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHH---HHHHHcCchh--hhhhCccccCcHHHHHHHHHHHHcC
Confidence 68999998876 6799999998742111 1111111111 2233333333 2346788999999999999999999
Q ss_pred CCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000463 787 DCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 787 ~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
+|+++|+|||||||||+...++.+-.......|.|.|+|||++.|.+. ||||+.|++|+|+++|+++++..+
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred CCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 999999999999999999999998777777889999999999999987 799999999999999999998764
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=386.84 Aligned_cols=201 Identities=31% Similarity=0.540 Sum_probs=179.7
Q ss_pred EEEEeeeeeecCC---CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCC---hhhh
Q 000463 1268 VDLIDLQVRYRSN---TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG---LHDL 1341 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~---~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~---l~~L 1341 (1479)
|+++||+..|+.. ...+|+||||+|++||..||+|+||||||||++++.|+-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999863 346999999999999999999999999999999999999999999999999988775 5567
Q ss_pred hcceEEEcCcccccc-ccHhhhcC-CCC--CCCH----HHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHH
Q 000463 1342 RSRFGIIPQEPVLFE-GTVRSNID-PIG--QYSD----EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLL 1413 (1479)
Q Consensus 1342 R~~i~iIpQdp~LF~-gTIR~NLd-p~~--~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1413 (1479)
|++||+|+|++.|++ -||.+|+. |.. ..+. +.+.+.|+.+||.|....-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 889999999999998 69999996 432 3444 45678899999988776665 36899999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1414 CLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1414 ~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+|||||..+|+||+.|||||+|||+|-+.|.+.|++.- -|-|+++|||.++.+++ ||||.||++|+
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~ 219 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGR 219 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCE
Confidence 99999999999999999999999999999999988754 37899999999999999 99999999996
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=387.52 Aligned_cols=214 Identities=59% Similarity=1.029 Sum_probs=203.7
Q ss_pred ccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcce
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRF 1345 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1345 (1479)
|.++++|++++|+....++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 56899999999975445699999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEEcCccccccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCE
Q 000463 1346 GIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRL 1425 (1479)
Q Consensus 1346 ~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~I 1425 (1479)
+++||+|.+|++|+++|++++...+++++.++++..++.+++..+|.|+++.+.+.+.+||+|||||++|||||+++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998776778899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1426 LFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1426 LiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|+|||||++||+.+.+.+.+.|++..++.|+|+++|+++.+..||+|++|++|+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~ 214 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGR 214 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCe
Confidence 999999999999999999999998877899999999999999999999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-43 Score=366.24 Aligned_cols=200 Identities=31% Similarity=0.506 Sum_probs=179.6
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecC-CCChhhhhcce
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDIS-LLGLHDLRSRF 1345 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~-~i~l~~LR~~i 1345 (1479)
-|+++|++.+|.. ..||||||++|++||++.|+||||||||||+++|.||.+|++|+|.|||.++. ..++..+|+++
T Consensus 2 mi~i~~l~K~fg~--~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCC--eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 4899999999974 35999999999999999999999999999999999999999999999998774 33788999999
Q ss_pred EEEcCccccccc-cHhhhcCCCC----CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHH
Q 000463 1346 GIIPQEPVLFEG-TVRSNIDPIG----QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLG 1416 (1479)
Q Consensus 1346 ~iIpQdp~LF~g-TIR~NLdp~~----~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1416 (1479)
|+|+|...||.- |+.+|+.... ..+ .+.-.+.|+++||.|....-|.. |||||+||++||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~q-----------LSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQ-----------LSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccc-----------cCcHHHHHHHHH
Confidence 999999999976 9999996321 222 34456789999999998888854 699999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC-CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1417 RVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA-ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1417 RALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~-~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||.-+|+|+++|||||+|||+.-..+.+.+++..+ |-|.|+|||.+...++ +|||+.||+|+
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~ 213 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGK 213 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCE
Confidence 999999999999999999999999999999999764 6799999999999998 99999999994
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=392.63 Aligned_cols=216 Identities=48% Similarity=0.832 Sum_probs=203.7
Q ss_pred CCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhc
Q 000463 1264 AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343 (1479)
Q Consensus 1264 ~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~ 1343 (1479)
..|.|+++|++++|+.....+|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46789999999999754456999999999999999999999999999999999999999999999999999998889999
Q ss_pred ceEEEcCccccccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCC
Q 000463 1344 RFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHS 1423 (1479)
Q Consensus 1344 ~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1423 (1479)
+++++||+|.+|++|+++|+++.....+++++++++.+++.+.+..+|.|+++.+++.+.+||+|||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876545677889999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1424 RLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1424 ~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
++|||||||++||+++.+.+.+.|++..+++|+|+++|+++.+..||||++|++|+
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~ 231 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGI 231 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCE
Confidence 99999999999999999999999998777899999999999999999999999985
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=388.51 Aligned_cols=190 Identities=22% Similarity=0.363 Sum_probs=165.4
Q ss_pred CCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhc
Q 000463 1264 AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343 (1479)
Q Consensus 1264 ~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~ 1343 (1479)
.+..+++.+|+|.|.++.++.++++++.++.-+++++||++|+||||+++++.+-.+|..|.+-+.+ |.
T Consensus 359 ~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ 427 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RL 427 (582)
T ss_pred CCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cc
Confidence 4457999999999999887899999999999999999999999999999999999999999988876 78
Q ss_pred ceEEEcCccccccccHhhhcC-------CCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHH
Q 000463 1344 RFGIIPQEPVLFEGTVRSNID-------PIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLG 1416 (1479)
Q Consensus 1344 ~i~iIpQdp~LF~gTIR~NLd-------p~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1416 (1479)
+|++-.|.-+=| ..-|.. -++.-+++|+++.|...|+...+...+ + ..||||||-|+++|
T Consensus 428 ri~~f~Qhhvd~---l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s--i--------~~LSGGQKsrvafA 494 (582)
T KOG0062|consen 428 RIKYFAQHHVDF---LDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS--I--------ASLSGGQKSRVAFA 494 (582)
T ss_pred eecchhHhhhhH---HHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc--c--------cccCCcchhHHHHH
Confidence 999999988644 233321 123348999999999999887665543 1 35899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1417 RVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1417 RALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
-....+|.+|||||||..||.++-..+-++|+. | +.-||+|+|+.+.|.. |+.++|.++|+
T Consensus 495 ~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~-F-~GGVv~VSHd~~fi~~~c~E~Wvve~g~ 556 (582)
T KOG0062|consen 495 ACTWNNPHLLVLDEPTNHLDRDSLGALAKALKN-F-NGGVVLVSHDEEFISSLCKELWVVEDGK 556 (582)
T ss_pred HHhcCCCcEEEecCCCccccHHHHHHHHHHHHh-c-CCcEEEEECcHHHHhhcCceeEEEcCCc
Confidence 999999999999999999999999999999986 4 4569999999999988 99999999995
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=382.30 Aligned_cols=212 Identities=35% Similarity=0.631 Sum_probs=197.5
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
|+++|++++|+.+..++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57899999997544569999999999999999999999999999999999999999999999999988888889999999
Q ss_pred EcCccccccccHhhhcCCCC-CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEE
Q 000463 1348 IPQEPVLFEGTVRSNIDPIG-QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLL 1426 (1479)
Q Consensus 1348 IpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1426 (1479)
+||++.+|+.|+++||.... ..+.+++.++++..++.+++..+|.|+++.....+.+||||||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999997533 34567788889999999999999999999988889999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1427 FMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1427 iLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
||||||++||+.+.+.+.+.|++..+++|+|+++|+++.+..||+|++|++|+
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~ 213 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGR 213 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999877899999999999998899999999985
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=355.57 Aligned_cols=205 Identities=28% Similarity=0.415 Sum_probs=183.7
Q ss_pred ccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCc-----cEEEEcCEecCC--CCh
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSG-----GRIIIDGIDISL--LGL 1338 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~-----G~I~IDG~dI~~--i~l 1338 (1479)
..++++|+++.|.. ..+|+|||++|++++.+|++|||||||||++++|.|+.+..+ |+|.+||.||-+ ++.
T Consensus 6 ~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 46899999999974 459999999999999999999999999999999999999875 999999999976 578
Q ss_pred hhhhcceEEEcCccccccccHhhhcCCCC---C----CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHH
Q 000463 1339 HDLRSRFGIIPQEPVLFEGTVRSNIDPIG---Q----YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1339 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
-.||+++|+|+|.|.-|..||+||+.... . .-||-+.++|+++.|||.+.. .| .+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---rL----~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---RL----HKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---Hh----hCCccCCChhHHH
Confidence 89999999999999999999999997431 1 224667889999999998864 33 3456679999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||||||||.-+|+||+||||||+||+.+...|.+.|.+..++-||++|||.+.-... +|+...+-.|+
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~ 225 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGE 225 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccE
Confidence 999999999999999999999999999999999999999999999999999998776 89998888774
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=419.00 Aligned_cols=189 Identities=28% Similarity=0.384 Sum_probs=159.2
Q ss_pred CCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC--CCccEEEEcCEecCCCChhhhhcceEEEcCcc-cccc
Q 000463 1280 NTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE--PSGGRIIIDGIDISLLGLHDLRSRFGIIPQEP-VLFE 1356 (1479)
Q Consensus 1280 ~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~--p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp-~LF~ 1356 (1479)
+....|+|||=-++||--+|++|.||||||||++.|.+-.. ..+|.|+|||.+..+ +..++++|||-|++ ++-+
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 44568999999999999999999999999999999997653 357999999998765 78899999999988 4656
Q ss_pred ccHhhhcCC------CCCCCHHH----HHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCC-CE
Q 000463 1357 GTVRSNIDP------IGQYSDEE----IWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHS-RL 1425 (1479)
Q Consensus 1357 gTIR~NLdp------~~~~sd~e----I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~-~I 1425 (1479)
-||||-|.. -.+.+++| +.++.+..+|.+.- |..||+-|+.||++||.||.||=-|+.|| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 699999942 12344443 55666666665543 45688888899999999999999999999 89
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhh--hhcCEEEEEeCC
Q 000463 1426 LFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTV--MDCDRVIVVDAG 1478 (1479)
Q Consensus 1426 LiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti--~~~DrIlVL~~G 1478 (1479)
|.||||||+||+++...|.+++|+.. .|+||++.-|.++.. +..||++.|++|
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrG 1007 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRG 1007 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcC
Confidence 99999999999999999999999975 689999999999753 459999999886
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=370.84 Aligned_cols=200 Identities=57% Similarity=0.963 Sum_probs=183.0
Q ss_pred CCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhh
Q 000463 1262 WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL 1341 (1479)
Q Consensus 1262 wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L 1341 (1479)
||..+.++++|++++|+....++++|+||+|++||.+||+|++|||||||+++|.|+++|.+|+|.+||.++.+.+..++
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 89999999999999997543469999999999999999999999999999999999999999999999999998888889
Q ss_pred hcceEEEcCccccccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhcc
Q 000463 1342 RSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLK 1421 (1479)
Q Consensus 1342 R~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1421 (1479)
|++++++||+|.+|++|+++|+..+..++++++.++++ +.+....||+|||||++||||+++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999998665566666666554 223456899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1422 HSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1422 ~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
+|+||||||||++||+++.+.+.+.|++..+++|+|++||+++.+..||+|++|++|+
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~ 200 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGE 200 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCE
Confidence 9999999999999999999999999999877899999999999998899999999985
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=371.92 Aligned_cols=214 Identities=34% Similarity=0.600 Sum_probs=197.5
Q ss_pred ccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcce
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRF 1345 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1345 (1479)
|+++++|++++|+....++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46899999999975334599999999999999999999999999999999999999999999999999888877888999
Q ss_pred EEEcCccccccccHhhhcCCCC-CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCC
Q 000463 1346 GIIPQEPVLFEGTVRSNIDPIG-QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSR 1424 (1479)
Q Consensus 1346 ~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1424 (1479)
+++||+|.+|..|+++|+.... ..+++++.++++..++.+.....|.|+++.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999899999997532 345677889999999999999999999999988889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1425 LLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1425 ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
+|||||||++||.++...+.+.|++..+++|||++||+++.+..||+|++|++|+
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~ 215 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGR 215 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCe
Confidence 9999999999999999999999998766689999999999887799999999985
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=360.12 Aligned_cols=208 Identities=28% Similarity=0.401 Sum_probs=173.6
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------eE
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------TT 710 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~i 710 (1479)
.|+++|+++.|. ++.+++|+||+|++||+++++||+||||||+|++|.++++|++|+|.++| ++
T Consensus 1 MI~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 1 MIEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred CceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhh
Confidence 378999999996 46799999999999999999999999999999999999999999999998 38
Q ss_pred EEEeccCcC-CCCcHHHHHhcCCC---CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhc
Q 000463 711 AYVAQTSWI-QNGTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQ 786 (1479)
Q Consensus 711 ayv~Q~~~i-~~~Tv~enI~fg~~---~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 786 (1479)
|||-|+.-+ ++.||.|||.+-.. +++++.++. .++-++.+...-.....+.+.+|||||+|||.+||||+.
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r-----~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAa 152 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR-----ADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAA 152 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHH-----HHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhc
Confidence 999999766 47899999987533 233332221 122223322221223456789999999999999999999
Q ss_pred CCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCccc-ccCCEEEEEeCCEEEEecChHHHHhcC
Q 000463 787 DCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFL-HNVDLILVMREGMIVQSGRYNALLNSG 859 (1479)
Q Consensus 787 ~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l-~~~D~i~~l~~G~i~~~g~~~~l~~~~ 859 (1479)
+|+|+|+||||+||||-+++.+-+++.+...+ |||+|+||||+++. +-+|||.+|++|+|++.++|++++.+.
T Consensus 153 dP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 153 DPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred CCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 99999999999999999999998777665544 99999999999985 569999999999999999999998753
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=369.89 Aligned_cols=207 Identities=29% Similarity=0.409 Sum_probs=176.3
Q ss_pred cEEEEeeEEEecCC--CCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------
Q 000463 644 AVEVRDGVFSWDDE--NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------- 708 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~--~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------- 708 (1479)
.|+++++++.|... ...++|+||||+|++||+.+|+|.+|+|||||+++|.|+-.|++|+|.++|
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 37899999999753 124689999999999999999999999999999999999999999999999
Q ss_pred ---eEEEEeccCcCCC-CcHHHHHhcCCCCCh----hhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHH
Q 000463 709 ---TTAYVAQTSWIQN-GTIEENILFGLPMNR----AKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQL 780 (1479)
Q Consensus 709 ---~iayv~Q~~~i~~-~Tv~enI~fg~~~~~----~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 780 (1479)
+||+++|++.+++ .||.|||.|+.+... +..++|.+ -++.+...| ..+..+.+|||||||||+|
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~e------lLelVgL~d--k~~~yP~qLSGGQKQRVaI 152 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAE------LLELVGLSD--KADRYPAQLSGGQKQRVAI 152 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHH------HHHHcCChh--hhccCchhcCcchhhHHHH
Confidence 3899999998876 799999999865432 22233332 234443333 3457889999999999999
Q ss_pred HHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000463 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 781 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
||||+.+|+|+|.|||||||||++.+.|.+.+.+... -|-|+++|||.++.++. |||+.||++|+++++|+..++..+
T Consensus 153 ARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~ 232 (339)
T COG1135 153 ARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFAN 232 (339)
T ss_pred HHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcC
Confidence 9999999999999999999999999999976665544 39999999999999987 999999999999999999988754
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=373.73 Aligned_cols=213 Identities=36% Similarity=0.652 Sum_probs=198.6
Q ss_pred ccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcce
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRF 1345 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1345 (1479)
|.++++|++++|+.. .++++|+||+|++||++||+|+||||||||+++|.|+.+|.+|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 468999999999643 3599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcCccccccccHhhhcCCCC-CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCC
Q 000463 1346 GIIPQEPVLFEGTVRSNIDPIG-QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSR 1424 (1479)
Q Consensus 1346 ~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1424 (1479)
+|+||+|.+|.+|+++|+.... ...++++.++++.+++.+++..+|.|+++.+.....+||+|||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999997543 345678889999999999999999999999988889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1425 LLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1425 ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
+|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+..||+|++|++|+
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~ 214 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGK 214 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCe
Confidence 9999999999999999999999998767899999999999998899999999985
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=373.77 Aligned_cols=212 Identities=33% Similarity=0.573 Sum_probs=197.2
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
|+++|++++|+....++++|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57899999997543359999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EcCccccccccHhhhcCCCC-CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEE
Q 000463 1348 IPQEPVLFEGTVRSNIDPIG-QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLL 1426 (1479)
Q Consensus 1348 IpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1426 (1479)
+||+|.+|..|+++|+.... .++.+++.++++..++.+++..+|.|+++.......+||+|||||++|||||+++|++|
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997542 34667788888999999999999999999998889999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1427 FMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1427 iLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
||||||++||+.+.+.+.+.|++..++.|+|++||+++.+..||+|++|++|+
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~ 213 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGK 213 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCe
Confidence 99999999999999999999999878899999999999998899999999995
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=360.90 Aligned_cols=197 Identities=34% Similarity=0.434 Sum_probs=162.7
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--------eEEEEec
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------TTAYVAQ 715 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------~iayv~Q 715 (1479)
.+++++++++|+. ..+|+||||+|++||+++|+||+||||||||++|+|+.+|++|+|.++| .+|||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 5789999999964 6799999999999999999999999999999999999999999999988 4799999
Q ss_pred cCcCC-CCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEEEe
Q 000463 716 TSWIQ-NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLD 794 (1479)
Q Consensus 716 ~~~i~-~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLD 794 (1479)
++-++ -.||+|||.||.+.....-.+. + ....+-++.....+ .-+..+.+|||||||||+|||||+.+|+++|||
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~-~-~~a~~~L~~VgL~~--~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlD 155 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEA-R-ERAKELLELVGLAG--FEDKYPHQLSGGMRQRVAIARALATRPKLLLLD 155 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhH-H-HHHHHHHHHcCCcc--hhhcCccccChHHHHHHHHHHHHhcCCCEEEEc
Confidence 97664 4799999999976532000000 0 12233344443322 234678999999999999999999999999999
Q ss_pred CccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCcccc-cCCEEEEEeC--CEEE
Q 000463 795 DVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLH-NVDLILVMRE--GMIV 847 (1479)
Q Consensus 795 ep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~-~~D~i~~l~~--G~i~ 847 (1479)
|||+|||+.|+.++.+.+.+.+.+ ++|+++||||+++.- -+|||++|.+ |+|.
T Consensus 156 EPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 156 EPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999998888777654 899999999999865 5899999998 5553
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=371.66 Aligned_cols=216 Identities=29% Similarity=0.525 Sum_probs=197.6
Q ss_pred CCccEEEEeeeeeecCC-CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhh
Q 000463 1264 AHGNVDLIDLQVRYRSN-TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLR 1342 (1479)
Q Consensus 1264 ~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR 1342 (1479)
..|.++++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+....|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45789999999999753 23599999999999999999999999999999999999999999999999999888777888
Q ss_pred cceEEEcCccccccccHhhhcCCC-CCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhcc
Q 000463 1343 SRFGIIPQEPVLFEGTVRSNIDPI-GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLK 1421 (1479)
Q Consensus 1343 ~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1421 (1479)
++++++||+|.+|++|+++|++.. .....+++++..+..++.+++..+|.|+++.+.+...+||||||||++|||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999843 3344566777777888999999999899998888899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1422 HSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1422 ~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
+|++|||||||++||+++.+.+.+.|++..+++|+|+|+|+++.+..||+|++|++|+
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~ 225 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGR 225 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCc
Confidence 9999999999999999999999999999877789999999999998899999999996
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=364.19 Aligned_cols=199 Identities=27% Similarity=0.443 Sum_probs=183.5
Q ss_pred EEEEeeeeeecCCC---CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcc
Q 000463 1268 VDLIDLQVRYRSNT---PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSR 1344 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1344 (1479)
++++||+++|++.. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57899999997642 3699999999999999999999999999999999999999999999999 6
Q ss_pred eEEEcCccccccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCC
Q 000463 1345 FGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSR 1424 (1479)
Q Consensus 1345 i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1424 (1479)
|+++||+|.+|++|+++|+......++++.+++++.+++.+++..+|.|+++.+.+.+.+||+|||||++||||++++|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998755566778889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHH-HHHHHc-CCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1425 LLFMDEATASVDSQTDAEIQR-IIREEF-AACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1425 ILiLDEaTs~lD~~Te~~Iq~-~I~~~f-~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
+++|||||++||+++.+.+.+ .+++.. ++.|||++||+++.+..||+|++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999887766 566554 3689999999999999999999999996
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=364.60 Aligned_cols=210 Identities=30% Similarity=0.478 Sum_probs=170.3
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC----------eEEE
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG----------TTAY 712 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g----------~iay 712 (1479)
..|+++|++++|++ . ++|+||||++++|++++|+||||||||||+++|+|.++|.+|+|.+.| +|||
T Consensus 3 ~~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 46899999999963 2 699999999999999999999999999999999999999999999876 4999
Q ss_pred Eecc---CcCCCCcHHHHHhcCCCCChhhHHHH--HHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcC
Q 000463 713 VAQT---SWIQNGTIEENILFGLPMNRAKYGEV--VRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD 787 (1479)
Q Consensus 713 v~Q~---~~i~~~Tv~enI~fg~~~~~~~~~~v--~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 787 (1479)
|||. .|-+..||+|-+.+|......++.+. -+....++.++.....+ .......+|||||+|||-|||||+++
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~--~~~r~i~~LSGGQ~QRV~lARAL~~~ 157 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMED--LRDRQIGELSGGQKQRVLLARALAQN 157 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchh--hhCCcccccCcHHHHHHHHHHHhccC
Confidence 9996 46788999999999865433222110 00111222333333222 23456678999999999999999999
Q ss_pred CCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHHhc
Q 000463 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 788 ~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
||+|+|||||+|+|+.++..+++.+.+...+|+||++||||++.+. .+|+|+.|+ +++...|++++..+.
T Consensus 158 p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~~ 228 (254)
T COG1121 158 PDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLTE 228 (254)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccCH
Confidence 9999999999999999999999766666666999999999999876 599999996 467788999888753
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=376.78 Aligned_cols=224 Identities=26% Similarity=0.348 Sum_probs=200.6
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------eE
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------TT 710 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~i 710 (1479)
.|+++|+++.|++. ..++|+|+||+|++||+++|+|+||||||||+++|.|+++ .+|+|.++| .+
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 48899999999643 3469999999999999999999999999999999999998 899999988 37
Q ss_pred EEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCE
Q 000463 711 AYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDI 790 (1479)
Q Consensus 711 ayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 790 (1479)
+|+||+|+++++|++||+....+...++..+.++.+++...+..+|.+.++.+++.|.+||||||||++||||++.+|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999964334556667778888999988999999999999999999999999999999999999999
Q ss_pred EEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcCcchHHHHHHhh
Q 000463 791 YLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHE 870 (1479)
Q Consensus 791 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~f~~l~~~~~ 870 (1479)
+||||||++||+.+.+.+.+.+.+ ..+++|+|+|||+++.+..||+|++|++|++++.|+++++++....|..++....
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~-~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQ-AFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHH-hcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhcc
Confidence 999999999999999888765543 4468999999999999888999999999999999999999987777777776543
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=364.04 Aligned_cols=196 Identities=31% Similarity=0.480 Sum_probs=172.6
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.|+++|++++|... + ||+||||+|++||.+||+||||||||||+++++|+.+|++|+|.++|.+++.... +.+||
T Consensus 4 ~i~v~nl~v~y~~~-~-vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR-P-VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE-e-eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 59999999999865 4 9999999999999999999999999999999999999999999999988765422 57999
Q ss_pred EEcCcc---ccccccHhhhcCCCC-----------CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHH
Q 000463 1347 IIPQEP---VLFEGTVRSNIDPIG-----------QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQL 1412 (1479)
Q Consensus 1347 iIpQdp---~LF~gTIR~NLdp~~-----------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1412 (1479)
||||.. .-|.-||+|-+.... ..+.+++.+||+++++.++..+ +++ .|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i~----~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QIG----ELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------ccc----ccCcHHHHH
Confidence 999965 357889999885421 1234889999999999987543 343 499999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC-CcEEEEEccChhhhhh-cCEEEEEeCC
Q 000463 1413 LCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA-ACTIISIAHRIPTVMD-CDRVIVVDAG 1478 (1479)
Q Consensus 1413 l~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~-~~TvI~IAHRl~ti~~-~DrIlVL~~G 1478 (1479)
+.|||||+++|++|+|||||++||+.++..|.+.|++..+ ||||++|+|+++.+++ ||+|+.|++.
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~ 215 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRH 215 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCe
Confidence 9999999999999999999999999999999999999875 8999999999999987 9999999753
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=356.20 Aligned_cols=201 Identities=31% Similarity=0.490 Sum_probs=176.5
Q ss_pred EEEEeeeeeecCCC--CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhh---h-
Q 000463 1268 VDLIDLQVRYRSNT--PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD---L- 1341 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---L- 1341 (1479)
++++||+..|..+. ..+|+|+||+|++||.|+|+||||||||||+++|-++-.|++|+|.++|.|+..++-++ +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999997543 36999999999999999999999999999999999999999999999999999998544 3
Q ss_pred hcceEEEcCccccccc-cHhhhcC-C--CCCC----CHHHHHHHHHHcCchHHHH-hCcCCccccccCCCCCCCchHHHH
Q 000463 1342 RSRFGIIPQEPVLFEG-TVRSNID-P--IGQY----SDEEIWKSLERCQLKDVVA-AKPDKLDSLVADSGDNWSVGQRQL 1412 (1479)
Q Consensus 1342 R~~i~iIpQdp~LF~g-TIR~NLd-p--~~~~----sd~eI~~aL~~~~L~~~i~-~lp~gLdt~v~e~G~nLSgGQrQr 1412 (1479)
|++||+|+|+..|++. |++||+. | +... .++.+.+.++..|+.+... ..|. .||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~-----------eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPS-----------ELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCch-----------hcCHHHHHH
Confidence 5679999999998876 9999996 2 2222 2456777788889987665 4453 579999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1413 LCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1413 l~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
+||||||+.+|+|++.||||++||.+|.+.|.+.+++.. .++|+|+|||+......|||++.|.+|+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGK 219 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCe
Confidence 999999999999999999999999999999999999975 3789999999999999999999999995
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=370.77 Aligned_cols=211 Identities=36% Similarity=0.632 Sum_probs=197.0
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
++++|++++|+.+ ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.+++..+...+|+.+++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5789999999643 359999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EcCccccccccHhhhcCCC-CCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEE
Q 000463 1348 IPQEPVLFEGTVRSNIDPI-GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLL 1426 (1479)
Q Consensus 1348 IpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1426 (1479)
+||+|.+|++|+++|+... ...+++++.++++.+++.+.+..+|.|+++.+.....+||+|||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999743 345677888999999999999999999999999889999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1427 FMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1427 iLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
||||||++||+++...+.+.|++..++.|+|+++|+++.+..||++++|++|+
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~ 212 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGR 212 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCE
Confidence 99999999999999999999998766889999999999998999999999985
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=353.31 Aligned_cols=199 Identities=31% Similarity=0.495 Sum_probs=180.5
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
|+|+||+++|. ...+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++|||
T Consensus 2 I~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 79999999997 3459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCccccccc-cHhhhcCCCC---CCC----HHHHHHHHHHcCch--HHHHhCcCCccccccCCCCCCCchHHHHHHHHH
Q 000463 1348 IPQEPVLFEG-TVRSNIDPIG---QYS----DEEIWKSLERCQLK--DVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGR 1417 (1479)
Q Consensus 1348 IpQdp~LF~g-TIR~NLdp~~---~~s----d~eI~~aL~~~~L~--~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1417 (1479)
|-|..-||.- ||.+||..-. ..+ ++++.+.++.+||. ++..+.|. .|||||+||+.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~-----------eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH-----------ELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch-----------hcCcchhhHHHHHH
Confidence 9999999966 9999996322 233 45678889999996 47777775 47999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1418 VMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1418 ALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||..+|+||+||||.++||+-|...+|+-+.+..+ ++|+|+|||++++... +|||.||++|+
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~ 213 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGE 213 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCe
Confidence 99999999999999999999999999999887653 7899999999998765 99999999996
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=371.51 Aligned_cols=212 Identities=34% Similarity=0.651 Sum_probs=195.8
Q ss_pred EEEEeeeeeecCC-CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1268 VDLIDLQVRYRSN-TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
++++|++++|+.. ..++|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+....|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4789999999753 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcCccccccccHhhhcCCC-CCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCE
Q 000463 1347 IIPQEPVLFEGTVRSNIDPI-GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRL 1425 (1479)
Q Consensus 1347 iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~I 1425 (1479)
++||+|.+|+.|+++|+... .....+++.+.++..++.+++..+|.|+++.+.....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999753 23456778888999999999999999999999888899999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1426 LFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1426 LiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|||||||++||+.+.+.+.+.|++..+++|+|+++|+++.+..||+|++|++|+
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~ 214 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQ 214 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCE
Confidence 999999999999999999999998767899999999999998899999999995
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=366.56 Aligned_cols=201 Identities=26% Similarity=0.427 Sum_probs=176.9
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChh---hhhcc
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLH---DLRSR 1344 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~---~LR~~ 1344 (1479)
++++|++++|+.+..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 689999999965434599999999999999999999999999999999999999999999999999876543 47889
Q ss_pred eEEEcCcccccc-ccHhhhcCCC----C---CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHH
Q 000463 1345 FGIIPQEPVLFE-GTVRSNIDPI----G---QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLG 1416 (1479)
Q Consensus 1345 i~iIpQdp~LF~-gTIR~NLdp~----~---~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1416 (1479)
++++||+|.+|. .|+++|+... + +..++++.++++.+++.+.....| .+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999887 4999999631 1 113467888999999987665554 36899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1417 RVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1417 RALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||+++|+||+|||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|+
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGR 215 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999999999999999998864 47899999999999986 99999999996
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=365.42 Aligned_cols=210 Identities=30% Similarity=0.445 Sum_probs=171.1
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------eE
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------TT 710 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~i 710 (1479)
.++++|++|+|+ ++++|+|+||++++||+++|+|||||||||||++|+|.++|.+|+|.++| .+
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 478999999996 46899999999999999999999999999999999999999999999999 48
Q ss_pred EEEeccCcC-CCCcHHHHHhcCCCCChhhHH--HHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcC
Q 000463 711 AYVAQTSWI-QNGTIEENILFGLPMNRAKYG--EVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD 787 (1479)
Q Consensus 711 ayv~Q~~~i-~~~Tv~enI~fg~~~~~~~~~--~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 787 (1479)
||+||.+.. ++.||+|-+.+|+.....++. ..-+....++.++.+. ......+...+|||||||||.|||||+++
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~--~~~la~r~~~~LSGGerQrv~iArALaQ~ 156 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLG--LEHLADRPVDELSGGERQRVLIARALAQE 156 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhC--cHHHhcCcccccChhHHHHHHHHHHHhcC
Confidence 999999755 467999999999642211111 0000001111122221 11122345668999999999999999999
Q ss_pred CCEEEEeCccCCCChhhHHHHHHHHHhhh-cCCcEEEEEccCCccc-ccCCEEEEEeCCEEEEecChHHHHhc
Q 000463 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGA-LKGKTIILVTHQVDFL-HNVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 788 ~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvTH~~~~l-~~~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
|+++|||||||+||....-++++.+.+.. .+|+|+|+|+||++.. ..||++++|++|+++.+|+++|+++.
T Consensus 157 ~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 157 TPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred CCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH
Confidence 99999999999999999999998877766 4599999999999985 56999999999999999999988763
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=369.10 Aligned_cols=465 Identities=18% Similarity=0.219 Sum_probs=326.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecccCch------hhHHHHhchhhHhhhhh
Q 000463 988 LFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSG------RILSRASTDQTNIDLFL 1061 (1479)
Q Consensus 988 ~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G------~ilnR~s~D~~~id~~l 1061 (1479)
..+.+|..++.+..++...+.++......+.-.-+-+.++++-+... .||.-...| ..=+|+..|+...-...
T Consensus 87 ~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t 165 (604)
T COG4178 87 QQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETT 165 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhhH
Confidence 45778888888888888899999988888888888888888888877 444443333 22368888887765554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000463 1062 PFFVGITVAMYITLLGIFIITCQYAW--------------PTIF-LVIPL----AWANYWYRGYYLSTSRELTRLDSITK 1122 (1479)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~v~~~~~~--------------~~~~-~~ip~----~~~~~~~~~~y~~~~r~l~rl~~~~~ 1122 (1479)
-.....++.++++++...+++.-.+- .+++ +++.. .++..++.+...+-.-+..+.|+.-|
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR 245 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFR 245 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 44455555665655555554442211 1111 11111 12223444444454555555555555
Q ss_pred hhhHHHHHHhhhcHHHHHHhCcHHHHHHHHHHHHHHHhhhHHHHHhHhH---HHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 000463 1123 APVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNE---WLGFRLELLGSFTFCLATLFMILLPSSI 1199 (1479)
Q Consensus 1123 sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~---wl~~~l~~l~~~~~~~~~~~~v~~~~~~ 1199 (1479)
..+ .-.-+....|-.|+.|+.-.++..+..+.-...+......+. |.......+..++- ..+.+-....|.
T Consensus 246 ~~L----vrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P--~li~ap~~f~g~ 319 (604)
T COG4178 246 YSL----VRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLP--ILIAAPRYFSGQ 319 (604)
T ss_pred HHH----HHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHH--HHhccHhhhcCc
Confidence 433 334556677888887765554444444333332222222222 22222222222110 011111233567
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC------ccchhccccCCCCCCCCCCCccEEEEee
Q 000463 1200 IKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEI------PSEAAWKMEDRLPPPNWPAHGNVDLIDL 1273 (1479)
Q Consensus 1200 ~~~g~vgl~l~y~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~------~~E~~~~~~~~~~~~~wp~~g~I~~~nv 1273 (1479)
++-|.+..+.+-..++...+.|++..+..+..-...+.|+.++.+. +.+.+.... .+....-.....|.|+|+
T Consensus 320 i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl 398 (604)
T COG4178 320 ITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENL 398 (604)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeee
Confidence 7778777777778888899999999999999999999999999742 211111100 000000001478999999
Q ss_pred eeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCccc
Q 000463 1274 QVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPV 1353 (1479)
Q Consensus 1274 s~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~ 1353 (1479)
++.-+++. ..|++++|+++|||.+-|.|+||||||||+++|.|+++-.+|+|.+-. -+++-++||.|.
T Consensus 399 ~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY 466 (604)
T COG4178 399 SLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPY 466 (604)
T ss_pred eEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCC
Confidence 99988766 589999999999999999999999999999999999999999987751 135889999999
Q ss_pred cccccHhhhcC-CCC--CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeC
Q 000463 1354 LFEGTVRSNID-PIG--QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDE 1430 (1479)
Q Consensus 1354 LF~gTIR~NLd-p~~--~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDE 1430 (1479)
+-.||+||-|. |.. +++|+|+.++|.+|+|.+++.++.+- +. -..-||+||||||++||.||+|||+++|||
T Consensus 467 ~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~-~~----W~~vLS~GEqQRlafARilL~kP~~v~LDE 541 (604)
T COG4178 467 LPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE-DR----WDRVLSGGEQQRLAFARLLLHKPKWVFLDE 541 (604)
T ss_pred CCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhcc-Cc----HhhhcChhHHHHHHHHHHHHcCCCEEEEec
Confidence 99999999996 543 38999999999999999999987432 22 345699999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeC
Q 000463 1431 ATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDA 1477 (1479)
Q Consensus 1431 aTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~ 1477 (1479)
|||+||.++|..+.+.++++.+++|||.|+||.....-.++.+-+++
T Consensus 542 ATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 542 ATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred chhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 99999999999999999999999999999999877777777766654
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=374.65 Aligned_cols=201 Identities=34% Similarity=0.467 Sum_probs=172.2
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-----------EEE
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-----------TAY 712 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-----------iay 712 (1479)
.|+++|++++|++. .+++|+||+|++||+++++|||||||||||++|+|+.+|++|+|.++|+ +|+
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 58999999999531 2999999999999999999999999999999999999999999999984 899
Q ss_pred EeccCcC-CCCcHHHHHhcCCCCCh-------hhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHH
Q 000463 713 VAQTSWI-QNGTIEENILFGLPMNR-------AKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAV 784 (1479)
Q Consensus 713 v~Q~~~i-~~~Tv~enI~fg~~~~~-------~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 784 (1479)
|+|+.-+ +++||+|||.||..... ++.+++.+...+.+ .+..++.+||||||||||||||+
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~-----------lL~r~P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEH-----------LLNRKPLQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChh-----------HHhcCcccCChhhHHHHHHHHHH
Confidence 9999776 57899999999986542 22223333333332 34467889999999999999999
Q ss_pred hcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHHhc
Q 000463 785 YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 785 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
.++|+++|||||+|+||++.+..+-.++.+...+ |.|+|+||||..++. -+|||++|++|+|.+.|++.|+.++
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 9999999999999999999999988777665444 899999999988765 5999999999999999999999864
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=335.13 Aligned_cols=200 Identities=26% Similarity=0.447 Sum_probs=182.3
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhh---hhcc
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD---LRSR 1344 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---LR~~ 1344 (1479)
|+|+||+.+|+.+ +++|+||||+|++||.+=++|+|||||||++++|+|...|++|+|.++|.|++++.-++ ||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7999999999987 77999999999999999999999999999999999999999999999999999998766 7999
Q ss_pred eEEEcCccccccc-cHhhhcC-CCC--CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHH
Q 000463 1345 FGIIPQEPVLFEG-TVRSNID-PIG--QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLG 1416 (1479)
Q Consensus 1345 i~iIpQdp~LF~g-TIR~NLd-p~~--~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1416 (1479)
||+|+||--|... |+.||+. |.. ..+ .+++.++|+++||.+....+|.. |||||+||+|||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~-----------LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQ-----------LSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccc-----------cCchHHHHHHHH
Confidence 9999999987755 9999996 332 222 35678999999999999999964 699999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1417 RVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1417 RALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||+..+|++|+-||||-+||+++...|++.+.+.- .|.||++.||+.+.+.+ --|++.+++|+
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Gr 214 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGR 214 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCE
Confidence 99999999999999999999999999999998864 58899999999999988 57899999996
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=365.85 Aligned_cols=201 Identities=33% Similarity=0.511 Sum_probs=177.6
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccC-----CCCccEEEEcCEecCCCC--hhh
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLV-----EPSGGRIIIDGIDISLLG--LHD 1340 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~-----~p~~G~I~IDG~dI~~i~--l~~ 1340 (1479)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++ +|.+|+|.+||.++.+.+ ...
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 578999999964 35999999999999999999999999999999999999 999999999999998776 567
Q ss_pred hhcceEEEcCccccccccHhhhcCCCC---C-C----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHH
Q 000463 1341 LRSRFGIIPQEPVLFEGTVRSNIDPIG---Q-Y----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQL 1412 (1479)
Q Consensus 1341 LR~~i~iIpQdp~LF~gTIR~NLdp~~---~-~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1412 (1479)
+|++++++||++.+|..|+++|+.... . . .++++.++++..++.+.....++ +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 889999999999999889999996421 1 1 23567888999998776554321 35799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1413 LCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1413 l~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
++|||||+++|++|||||||++||+++.+.+.+.|++..+++|||+|+|+++.+.. ||||++|++|+
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 217 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGR 217 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCE
Confidence 99999999999999999999999999999999999998666899999999999876 99999999995
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=349.04 Aligned_cols=202 Identities=30% Similarity=0.494 Sum_probs=173.3
Q ss_pred cEEEEeeeeeecCCC--CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCC-hhhhhc
Q 000463 1267 NVDLIDLQVRYRSNT--PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG-LHDLRS 1343 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~-l~~LR~ 1343 (1479)
.++++|+++.|+... .++|+||||+|.+||.+||||+||||||||.++|.|+.+|++|+|.+||.+..... -+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999997643 24999999999999999999999999999999999999999999999997765543 335788
Q ss_pred ceEEEcCccc--c-ccccHhhhcC-CCCC----CCHHHHHHHHHHcCchH-HHHhCcCCccccccCCCCCCCchHHHHHH
Q 000463 1344 RFGIIPQEPV--L-FEGTVRSNID-PIGQ----YSDEEIWKSLERCQLKD-VVAAKPDKLDSLVADSGDNWSVGQRQLLC 1414 (1479)
Q Consensus 1344 ~i~iIpQdp~--L-F~gTIR~NLd-p~~~----~sd~eI~~aL~~~~L~~-~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1414 (1479)
.+.+|+|||. | -.-||++-|. |... -..++++++|+.+||.+ +..+.|. .||||||||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~-----------eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPH-----------ELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCch-----------hcChhHHHHHH
Confidence 8999999995 2 2337777663 3322 23566999999999976 4455564 47999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCc--EEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1415 LGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAAC--TIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1415 LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~--TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||||.-+|++||+|||||+||.-..+.|.+.+.+..+++ |.|+|||++..+.. ||||+||++|+
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ 219 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQ 219 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCe
Confidence 9999999999999999999999999999999999877655 99999999999998 99999999995
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=383.08 Aligned_cols=201 Identities=30% Similarity=0.478 Sum_probs=177.8
Q ss_pred EEEEeeeeeecCC--CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhh---hh
Q 000463 1268 VDLIDLQVRYRSN--TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD---LR 1342 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---LR 1342 (1479)
|+++|++++|+.+ ..++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999642 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cceEEEcCcccccc-ccHhhhcCC-C--CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHH
Q 000463 1343 SRFGIIPQEPVLFE-GTVRSNIDP-I--GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLC 1414 (1479)
Q Consensus 1343 ~~i~iIpQdp~LF~-gTIR~NLdp-~--~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1414 (1479)
++|++|||++.+|. .|+++|+.. . ...+ ++++.++++.+++.+.....| ..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999995 699999962 1 1223 345788999999987665544 368999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1415 LGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1415 LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||||+.+|+||+||||||+||+++...|.+.|++..+ +.|||+|||+++.+.. ||||++|++|+
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~ 218 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGE 218 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999998754 7899999999999977 99999999995
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=359.93 Aligned_cols=200 Identities=29% Similarity=0.498 Sum_probs=177.1
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.++++|++++|. ..++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|++||.|+.+++.+++-++++
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 478999999997 356999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccc-cccccHhhhcC----C----CCCCC--H-HHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHH
Q 000463 1347 IIPQEPV-LFEGTVRSNID----P----IGQYS--D-EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLC 1414 (1479)
Q Consensus 1347 iIpQdp~-LF~gTIR~NLd----p----~~~~s--d-~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1414 (1479)
||||++. -|.-||+|-+. | +...+ | +.+.+||+.+++.++..+. + ..||||||||++
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~---~--------~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP---V--------DELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc---c--------cccChhHHHHHH
Confidence 9999975 45559988774 2 22222 3 3578899999999886542 2 258999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhh-hcCEEEEEeCCC
Q 000463 1415 LGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVM-DCDRVIVVDAGL 1479 (1479)
Q Consensus 1415 LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~-~~DrIlVL~~G~ 1479 (1479)
|||||.++|+||+|||||++||....-.|++.+++.. ++.|+|+|.|+++... .||++++|++|+
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~ 216 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGK 216 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCe
Confidence 9999999999999999999999999999999999976 3699999999998765 599999999995
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=358.42 Aligned_cols=207 Identities=29% Similarity=0.423 Sum_probs=169.3
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe--------------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------- 709 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------- 709 (1479)
.|++++.++.|+ ..++++||+++|+.||++|+.|||||||||||++|+|+..|++|.|.++|+
T Consensus 2 ~i~i~~~~~~~~---~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFG---AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhcc---cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 477888888885 357899999999999999999999999999999999999999999999984
Q ss_pred EEEEeccCcCC-CCcHHHHHhcCCCCChhhH---HHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHh
Q 000463 710 TAYVAQTSWIQ-NGTIEENILFGLPMNRAKY---GEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVY 785 (1479)
Q Consensus 710 iayv~Q~~~i~-~~Tv~enI~fg~~~~~~~~---~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 785 (1479)
||||+|+.-+| .+||.|||.||.+....+- +.-.++..+.+-.+.-+.+ ...+.+|||||||||||||||.
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la-----~ryP~QLSGGQrQRVALARALA 153 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLA-----DRYPAQLSGGQRQRVALARALA 153 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchh-----hcCchhcChHHHHHHHHHHHhh
Confidence 79999997765 7899999999985431111 1111111222211111222 2467899999999999999999
Q ss_pred cCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHHhc
Q 000463 786 QDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 786 ~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
.+|+++||||||+|||++.++.+-.-+.+...+ |.|+++||||.++.. .||||++|++|+|.+.|+++|+...
T Consensus 154 ~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~ 228 (345)
T COG1118 154 VEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228 (345)
T ss_pred cCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence 999999999999999999999886655555555 899999999999865 5999999999999999999999754
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=351.86 Aligned_cols=194 Identities=26% Similarity=0.395 Sum_probs=174.5
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.+++++|+.+|.. ..||+||||+|++||.|+|+||||||||||++++.|+..|++|+|.+||.++.. -...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~-----p~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG-----PGPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC-----CCCCEE
Confidence 5889999999976 569999999999999999999999999999999999999999999999998743 356799
Q ss_pred EEcCccccccc-cHhhhcCCCCC-------CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHH
Q 000463 1347 IIPQEPVLFEG-TVRSNIDPIGQ-------YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRV 1418 (1479)
Q Consensus 1347 iIpQdp~LF~g-TIR~NLdp~~~-------~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1418 (1479)
+|+|++.||.- ||++|+...-+ -..+.+.++|+++||.++-...|.. ||||||||++||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~q-----------LSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQ-----------LSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccc-----------cChHHHHHHHHHHH
Confidence 99999999998 99999963211 1245689999999999999888864 69999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCC
Q 000463 1419 MLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAG 1478 (1479)
Q Consensus 1419 LLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G 1478 (1479)
|+.+|+||+||||.++||..|...+|+-+.+..+ ++||++|||++++... +|||+||.++
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999999999999999999999999988764 5899999999998766 9999999985
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=359.40 Aligned_cols=211 Identities=21% Similarity=0.347 Sum_probs=188.3
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCCh----hhhhc
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGL----HDLRS 1343 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l----~~LR~ 1343 (1479)
+.+.|+.++|+.+ .++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+
T Consensus 1 ~~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 1 VQVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred CeeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 3577899999866 459999999999999999999999999999999999999999999999999876543 34567
Q ss_pred ceEEEcCccccccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCC
Q 000463 1344 RFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHS 1423 (1479)
Q Consensus 1344 ~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1423 (1479)
.++++||+|.+|+.|+++|+.....+++++.+++++.+++.+.+..+|.|+++.+.....+||+|||||++||||++++|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 89999999999999999999865445677788999999999999999999999998888999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHH--HHHHHc-CCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1424 RLLFMDEATASVDSQTDAEIQR--IIREEF-AACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1424 ~ILiLDEaTs~lD~~Te~~Iq~--~I~~~f-~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
+||||||||++||..+.+.+.+ .++... .+.|+|++||+.+.+..||+|++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999999888877 444432 3689999999999998899999999985
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=351.54 Aligned_cols=200 Identities=31% Similarity=0.441 Sum_probs=161.3
Q ss_pred EEEEeeEEEecCCC-CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC---------------
Q 000463 645 VEVRDGVFSWDDEN-GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------------- 708 (1479)
Q Consensus 645 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------- 708 (1479)
++++|++..|.... ..++|+++||+|++||+++|+||+||||||||++|.|...|++|.|.++|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999886432 24789999999999999999999999999999999999999999999998
Q ss_pred --eEEEEeccCc-CCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHh
Q 000463 709 --TTAYVAQTSW-IQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVY 785 (1479)
Q Consensus 709 --~iayv~Q~~~-i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 785 (1479)
++|||+|+.. +++.|++|||.++..+......+. ....+.-++.+..++. ....++.+|||||||||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~--~~~~~~l~~~lgl~~~-~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR--KRAAEELLEVLGLEDR-LLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHH--HHHHHHHHHhcCChhh-hccCCchhcCHHHHHHHHHHHHHh
Confidence 2899999965 578899999996433222111100 1111122233332221 223568899999999999999999
Q ss_pred cCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCcccccCCEEEEEeCCEEE
Q 000463 786 QDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHNVDLILVMREGMIV 847 (1479)
Q Consensus 786 ~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~~D~i~~l~~G~i~ 847 (1479)
.+|+++|.||||.+||.++++.+++.+.+...+ |+|+|+||||.+....|||++.|+||++.
T Consensus 159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999877666544 89999999999999999999999999954
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=377.24 Aligned_cols=211 Identities=31% Similarity=0.432 Sum_probs=175.7
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-----------EE
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-----------TA 711 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-----------ia 711 (1479)
..++++|++++|+ +..+++|+||+|++||+++++|||||||||||++|+|+..|++|+|.++|+ ++
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4799999999996 468999999999999999999999999999999999999999999999994 79
Q ss_pred EEeccCcCC-CCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCE
Q 000463 712 YVAQTSWIQ-NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDI 790 (1479)
Q Consensus 712 yv~Q~~~i~-~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 790 (1479)
+|+|+.-+| +.||+|||.||.......-++.++ ....+-++.....+ .-.+++.+|||||||||||||||..+|++
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~-~rv~e~L~lV~L~~--~~~R~p~qLSGGQqQRVALARAL~~~P~v 157 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIK-ARVEEALELVGLEG--FADRKPHQLSGGQQQRVALARALVPEPKV 157 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHH-HHHHHHHHHcCchh--hhhhChhhhChHHHHHHHHHHHhhcCcch
Confidence 999997765 789999999998732211111110 01122233332222 33578899999999999999999999999
Q ss_pred EEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCccc-ccCCEEEEEeCCEEEEecChHHHHhcC
Q 000463 791 YLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFL-HNVDLILVMREGMIVQSGRYNALLNSG 859 (1479)
Q Consensus 791 llLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l-~~~D~i~~l~~G~i~~~g~~~~l~~~~ 859 (1479)
+|||||+||||.+.++++-.++.+...+ |.|.|+||||.++. ..+|||++|++|+|.+.|+++|+....
T Consensus 158 LLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 158 LLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred hhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 9999999999999999998887766544 99999999999874 568999999999999999999998653
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=378.85 Aligned_cols=206 Identities=26% Similarity=0.360 Sum_probs=173.6
Q ss_pred CCccEEEEeeeeeecCCC---CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCC----
Q 000463 1264 AHGNVDLIDLQVRYRSNT---PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLL---- 1336 (1479)
Q Consensus 1264 ~~g~I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i---- 1336 (1479)
....|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 334699999999997432 3599999999999999999999999999999999999999999999999998653
Q ss_pred ------------ChhhhhcceEEEcCcc--ccccccHhhhcCCCC---CCCHHH----HHHHHHHcCchHHHHhCcCCcc
Q 000463 1337 ------------GLHDLRSRFGIIPQEP--VLFEGTVRSNIDPIG---QYSDEE----IWKSLERCQLKDVVAAKPDKLD 1395 (1479)
Q Consensus 1337 ------------~l~~LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sd~e----I~~aL~~~~L~~~i~~lp~gLd 1395 (1479)
+...+|+++++++|+| .+|++|+++|+.... ..++++ +.++++.+++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------- 167 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD---------- 167 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------
Confidence 3567899999999998 689999999996321 223333 344455555431
Q ss_pred ccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhh-hcCEEE
Q 000463 1396 SLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVM-DCDRVI 1473 (1479)
Q Consensus 1396 t~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~-~~DrIl 1473 (1479)
......+.+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+. .||||+
T Consensus 168 ~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~ 247 (320)
T PRK13631 168 SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247 (320)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 22344567899999999999999999999999999999999999999999998753 5789999999999885 499999
Q ss_pred EEeCCC
Q 000463 1474 VVDAGL 1479 (1479)
Q Consensus 1474 VL~~G~ 1479 (1479)
||++|+
T Consensus 248 vl~~G~ 253 (320)
T PRK13631 248 VMDKGK 253 (320)
T ss_pred EEECCE
Confidence 999995
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=361.34 Aligned_cols=201 Identities=31% Similarity=0.471 Sum_probs=174.8
Q ss_pred EEEEeeeeeecCCC--CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhh----h
Q 000463 1268 VDLIDLQVRYRSNT--PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD----L 1341 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~----L 1341 (1479)
++++|++++|+.+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999997531 45999999999999999999999999999999999999999999999999998876433 4
Q ss_pred hcceEEEcCccccccc-cHhhhcCCC---CCC----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHH
Q 000463 1342 RSRFGIIPQEPVLFEG-TVRSNIDPI---GQY----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLL 1413 (1479)
Q Consensus 1342 R~~i~iIpQdp~LF~g-TIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1413 (1479)
|++++++||+|.+|.+ |+++|+... ... .++++.++++..++.+.....| .+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYP-----------SELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcCh-----------hhcCHHHHHHH
Confidence 6789999999999987 999999632 111 2356778888888866554333 46899999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1414 CLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1414 ~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
+|||||+++|+||||||||++||+++.+.+.+.|++..+ ++|||+|+|+++.+..||+|++|++|+
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~ 217 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGK 217 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCc
Confidence 999999999999999999999999999999999998754 789999999999988899999999996
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=342.30 Aligned_cols=212 Identities=31% Similarity=0.429 Sum_probs=170.2
Q ss_pred CccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------
Q 000463 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------- 708 (1479)
Q Consensus 642 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------- 708 (1479)
+..|++++++++|. ++.+++||||+|++||+++|+||+||||||||++|+|+++|++|+|.++|
T Consensus 6 ~~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 45899999999995 56899999999999999999999999999999999999999999999998
Q ss_pred ---eEEEEeccCcCCC-CcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccc-cccCCCccchHHHHHHHHHHH
Q 000463 709 ---TTAYVAQTSWIQN-GTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTE-IGERGINLSGGQKQRIQLARA 783 (1479)
Q Consensus 709 ---~iayv~Q~~~i~~-~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~-ig~~g~~LSGGQkqRv~LARA 783 (1479)
++|+++|+.-+|+ .||+|||.|...-....-++.++.-.+. .++.. |.... ....+.+||||+++|++||||
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~-KL~~V--GL~~~~~~~~PsELSGGM~KRvaLARA 159 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLM-KLELV--GLRGAAADLYPSELSGGMRKRVALARA 159 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHH-HHHhc--CCChhhhhhCchhhcchHHHHHHHHHH
Confidence 3799999998885 6999999996432111111122211111 12221 11111 123567899999999999999
Q ss_pred HhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-C-CcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhcCc
Q 000463 784 VYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-K-GKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNSGM 860 (1479)
Q Consensus 784 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~~~ 860 (1479)
+..||+++++|||||+|||.++..+- +++..+. . |-|+|+||||++.+.. ||+|+++.||+|+..|+++|+.+.+.
T Consensus 160 ialdPell~~DEPtsGLDPI~a~~~~-~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~ 238 (263)
T COG1127 160 IALDPELLFLDEPTSGLDPISAGVID-ELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDD 238 (263)
T ss_pred HhcCCCEEEecCCCCCCCcchHHHHH-HHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCC
Confidence 99999999999999999999987664 5554433 3 8999999999998865 79999999999999999999987543
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=364.31 Aligned_cols=199 Identities=33% Similarity=0.504 Sum_probs=174.5
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCCh---hhhhcc
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGL---HDLRSR 1344 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l---~~LR~~ 1344 (1479)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999963 359999999999999999999999999999999999999999999999999987764 567889
Q ss_pred eEEEcCccccccc-cHhhhcCCC----CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHH
Q 000463 1345 FGIIPQEPVLFEG-TVRSNIDPI----GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCL 1415 (1479)
Q Consensus 1345 i~iIpQdp~LF~g-TIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1415 (1479)
++++||+|.+|.+ |+++|+... ...+ ++++.++++.+++.+.....+ .+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP-----------AELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHH
Confidence 9999999999986 999999632 1123 345677888888876554333 3689999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1416 GRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1416 ARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+.. ||||++|++|+
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~ 214 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGK 214 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCe
Confidence 9999999999999999999999999999999998653 7899999999999887 99999999985
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=358.83 Aligned_cols=200 Identities=31% Similarity=0.518 Sum_probs=175.2
Q ss_pred EEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEE
Q 000463 1269 DLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGII 1348 (1479)
Q Consensus 1269 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iI 1348 (1479)
+++|++++|+.+...+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++++
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 46899999975334699999999999999999999999999999999999999999999999999888888889999999
Q ss_pred cCcc--ccccccHhhhcCCC---CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHh
Q 000463 1349 PQEP--VLFEGTVRSNIDPI---GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1349 pQdp--~LF~gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1419 (1479)
||+| .++..|+++|+... ...+ ++++.++++..++.+.....+ .+||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP-----------FTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9998 36788999999642 1122 345677888888876554433 46899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC-CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEFA-ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~-~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+++|++|||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999998753 7899999999999988 99999999996
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=362.82 Aligned_cols=214 Identities=43% Similarity=0.705 Sum_probs=192.3
Q ss_pred CCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCeEEEEeccCcCC
Q 000463 641 DNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ 720 (1479)
Q Consensus 641 ~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~iayv~Q~~~i~ 720 (1479)
....|+++|+++.+ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++|++|+++++
T Consensus 36 ~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~ 110 (282)
T cd03291 36 DDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIM 110 (282)
T ss_pred CCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCccccc
Confidence 45679999999962 4699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEEEeCccCCC
Q 000463 721 NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAV 800 (1479)
Q Consensus 721 ~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saL 800 (1479)
+.|++||+.++......++.+.++++.+.+.+..++.+.++.+++++.+||||||||++||||++.+|+++||||||++|
T Consensus 111 ~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gL 190 (282)
T cd03291 111 PGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190 (282)
T ss_pred ccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 89999999997654444556667777888888888888888888899999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcC
Q 000463 801 DAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSG 859 (1479)
Q Consensus 801 D~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~ 859 (1479)
|+.+.+.+.+.+++...+++|+|++||+++++..||++++|++|++++.|+.+++.+..
T Consensus 191 D~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 249 (282)
T cd03291 191 DVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLR 249 (282)
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcc
Confidence 99999988876655555689999999999998889999999999999999999887543
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=359.01 Aligned_cols=200 Identities=27% Similarity=0.441 Sum_probs=176.7
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChh---hhhcc
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLH---DLRSR 1344 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~---~LR~~ 1344 (1479)
++++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+..++.. .+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 6899999999533 4599999999999999999999999999999999999999999999999999887643 46789
Q ss_pred eEEEcCcccccc-ccHhhhcCCC----C---CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHH
Q 000463 1345 FGIIPQEPVLFE-GTVRSNIDPI----G---QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLG 1416 (1479)
Q Consensus 1345 i~iIpQdp~LF~-gTIR~NLdp~----~---~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1416 (1479)
++++||+|.+|. .|+++|+... + ...+++++++++..++.+.....| .+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999986 5999999632 1 112467889999999987655544 36899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1417 RVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1417 RALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999864 47999999999999987 99999999996
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=342.77 Aligned_cols=210 Identities=30% Similarity=0.432 Sum_probs=173.1
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--------------
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------- 708 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------- 708 (1479)
..|+++|++..|+ +++.+|+||||+|++||+++|+|++||||||||++|.|..+|++|+|.++|
T Consensus 2 ~~i~~~nl~k~yp--~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~ 79 (258)
T COG3638 2 MMIEVKNLSKTYP--GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79 (258)
T ss_pred ceEEEeeeeeecC--CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHH
Confidence 3689999999997 356899999999999999999999999999999999999999999999988
Q ss_pred --eEEEEeccCcC-CCCcHHHHHhcCCCCChhhHHHHH------HHhchHHHHHhcccCCccccccCCCccchHHHHHHH
Q 000463 709 --TTAYVAQTSWI-QNGTIEENILFGLPMNRAKYGEVV------RVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQ 779 (1479)
Q Consensus 709 --~iayv~Q~~~i-~~~Tv~enI~fg~~~~~~~~~~v~------~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 779 (1479)
++||++|++.+ +..||.+|++.|+--...+++... +.....+.++.+...+ ..-.+..+|||||+|||+
T Consensus 80 r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~--~A~qra~~LSGGQQQRVa 157 (258)
T COG3638 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILD--KAYQRASTLSGGQQQRVA 157 (258)
T ss_pred HHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHH--HHHHHhccCCcchhHHHH
Confidence 38999999876 678999999988643322222111 0000111233332222 233577899999999999
Q ss_pred HHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHH
Q 000463 780 LARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALL 856 (1479)
Q Consensus 780 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~ 856 (1479)
|||||+++|+++|-|||+++|||.+++++++.+.+... .|.|+|+.-|+++... +||||+-|++|+|++.|+.+|+.
T Consensus 158 IARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~ 236 (258)
T COG3638 158 IARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236 (258)
T ss_pred HHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhh
Confidence 99999999999999999999999999999988776654 5899999999999975 59999999999999999998854
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=356.95 Aligned_cols=201 Identities=31% Similarity=0.532 Sum_probs=183.4
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecC-CCChhhhhcce
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDIS-LLGLHDLRSRF 1345 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~-~i~l~~LR~~i 1345 (1479)
.++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.+++ ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 58899999999887 67999999999999999999999999999999999999999999999999998 48899999999
Q ss_pred EEEcCcc--ccccccHhhhcCCCC---CCCH----HHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHH
Q 000463 1346 GIIPQEP--VLFEGTVRSNIDPIG---QYSD----EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLG 1416 (1479)
Q Consensus 1346 ~iIpQdp--~LF~gTIR~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1416 (1479)
|+|.|+| .+|..||.+.+.... ..+. +.+.++|+.+++.++....| .+||||||||++||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 799999999997432 2344 45788999999998855554 36899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCC--cEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1417 RVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAA--CTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1417 RALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~--~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
.+|..+|+|||||||||+||+...+.+.+.+++..++ .|+|+|||+++.+.+ |||++||++|+
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~ 216 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGK 216 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCE
Confidence 9999999999999999999999999999999997654 699999999999998 99999999985
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=355.24 Aligned_cols=196 Identities=27% Similarity=0.452 Sum_probs=172.9
Q ss_pred EEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEE
Q 000463 1269 DLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGII 1348 (1479)
Q Consensus 1269 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iI 1348 (1479)
+++|++++|+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...|++++++
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 368999999642 459999999999999999999999999999999999999999999999999864 4567889999
Q ss_pred cCcc--ccccccHhhhcCCCC---CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCC
Q 000463 1349 PQEP--VLFEGTVRSNIDPIG---QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHS 1423 (1479)
Q Consensus 1349 pQdp--~LF~gTIR~NLdp~~---~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1423 (1479)
||+| .+|..|+++|+.... ...++++.++++.+++.++....|. .||||||||++|||||+++|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPL-----------SLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCch-----------hCCHHHHHHHHHHHHHHhCC
Confidence 9998 467889999996421 1234678999999999877655543 58999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1424 RLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1424 ~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
++|+|||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 203 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGA 203 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999863 57899999999999986 99999999995
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=337.35 Aligned_cols=205 Identities=30% Similarity=0.440 Sum_probs=173.2
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCC-----cEEEECCe--------
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKIS-----GKVKVCGT-------- 709 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~-----G~i~~~g~-------- 709 (1479)
..++++|+++.|. ++.+|+|||++|++++++|++||+||||||||+++.+..+... |+|.++|+
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 5789999999996 4579999999999999999999999999999999999887665 89999883
Q ss_pred -------EEEEeccCcCCCCcHHHHHhcCCCCCh---hhHHHH----HHHhchHHHHHhcccCCccccccCCCccchHHH
Q 000463 710 -------TAYVAQTSWIQNGTIEENILFGLPMNR---AKYGEV----VRVCCLEKDLEMMEYGDQTEIGERGINLSGGQK 775 (1479)
Q Consensus 710 -------iayv~Q~~~i~~~Tv~enI~fg~~~~~---~~~~~v----~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 775 (1479)
+|+|+|.|.-|..||+|||.+|..... +..+++ ++..+|.+... | .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK-----D--rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK-----D--RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH-----H--HhhCCccCCChhHH
Confidence 799999999999999999999965432 222233 33333332221 1 24567889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHH
Q 000463 776 QRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNA 854 (1479)
Q Consensus 776 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~ 854 (1479)
||++||||+.-+|+|+|||||||||||.+..+| ++++..++++-|+|+|||+++...+ .|+...+.+|+++|.|+.++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 999999999999999999999999999999988 5677777788999999999998776 69999999999999999988
Q ss_pred HHhc
Q 000463 855 LLNS 858 (1479)
Q Consensus 855 l~~~ 858 (1479)
+..+
T Consensus 235 iF~~ 238 (253)
T COG1117 235 IFTN 238 (253)
T ss_pred hhcC
Confidence 8754
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=351.76 Aligned_cols=201 Identities=60% Similarity=0.983 Sum_probs=181.4
Q ss_pred EEEEeeEEEecCCCC--cccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCeEEEEeccCcCCCC
Q 000463 645 VEVRDGVFSWDDENG--EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNG 722 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~--~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~iayv~Q~~~i~~~ 722 (1479)
++++|+++.|++... +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++|++|+|.+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 468999999964211 369999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEEEeCccCCCCh
Q 000463 723 TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDA 802 (1479)
Q Consensus 723 Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~ 802 (1479)
|++||+.++...+.++..+..+.+++.+.+..+|.|.++.+++++.+||||||||++||||++++|+++||||||++||+
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 99999999866665566677778888888999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhh-hcCCcEEEEEccCCcccccCCEEEEEeCCE
Q 000463 803 HTGSDIFKECVRG-ALKGKTIILVTHQVDFLHNVDLILVMREGM 845 (1479)
Q Consensus 803 ~~~~~i~~~~~~~-~~~~~tvilvTH~~~~l~~~D~i~~l~~G~ 845 (1479)
+..+.+++.++.. ..+|+|+|++||+++.+..+|++++|++|+
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999998766543 345899999999999988899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=356.81 Aligned_cols=200 Identities=28% Similarity=0.427 Sum_probs=175.2
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCCh---hhhhcc
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGL---HDLRSR 1344 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l---~~LR~~ 1344 (1479)
++++|++++|+.+ +.+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 459999999999999999999999999999999999999999999999999987754 347889
Q ss_pred eEEEcCccccccc-cHhhhcCCC---CCC----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHH
Q 000463 1345 FGIIPQEPVLFEG-TVRSNIDPI---GQY----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLG 1416 (1479)
Q Consensus 1345 i~iIpQdp~LF~g-TIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1416 (1479)
++++||+|.+|.+ |+++|+... ... .++++.++++.+++.+.....| .+||+|||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHHH
Confidence 9999999999985 999999632 112 2346788888888876655443 36899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1417 RVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1417 RALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||+++|+||||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|+
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999999999999999999863 47999999999999987 99999999996
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=363.71 Aligned_cols=204 Identities=24% Similarity=0.383 Sum_probs=180.4
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC---CCccEEEEcCEecCCCChhhhhc
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE---PSGGRIIIDGIDISLLGLHDLRS 1343 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~---p~~G~I~IDG~dI~~i~l~~LR~ 1343 (1479)
.|+++|++++|+. +++|+|+||++++||.+||+|+||||||||+++|.|+++ |++|+|.+||.|+...+....|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 4789999999963 459999999999999999999999999999999999985 69999999999999888888899
Q ss_pred ceEEEcCccccccccHhhhcCCCC---C------CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHH
Q 000463 1344 RFGIIPQEPVLFEGTVRSNIDPIG---Q------YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLC 1414 (1479)
Q Consensus 1344 ~i~iIpQdp~LF~gTIR~NLdp~~---~------~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1414 (1479)
+++|+||+|.+|..|+++|+.... . ..++++.++++.+++.+++..+ ..+.+.+||+|||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHHH
Confidence 999999999999999999996421 1 1234678889999987655432 23345689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1415 LGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1415 LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||||+++|+||+|||||++||..+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|+
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 218 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE 218 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCE
Confidence 999999999999999999999999999999999987778999999999999876 99999999985
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=342.41 Aligned_cols=171 Identities=36% Similarity=0.632 Sum_probs=162.0
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
|+++|++++|+....++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.+.+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57899999997544569999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EcCccccccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEE
Q 000463 1348 IPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLF 1427 (1479)
Q Consensus 1348 IpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILi 1427 (1479)
++|+|.+|++|+++|+ ||+|||||++||||++++|++||
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 89999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1428 MDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1428 LDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|||||++||+.+.+.+.+.|++.. +++|+|+++|+++.+..||+|++|++|+
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~ 172 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGR 172 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCC
Confidence 999999999999999999998864 4789999999999998899999999996
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=357.51 Aligned_cols=218 Identities=32% Similarity=0.471 Sum_probs=187.1
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------eEE
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------TTA 711 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~ia 711 (1479)
|+++|+++.|+.. .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4689999999632 35799999999999999999999999999999999999999999999987 279
Q ss_pred EEeccCcCCCCcHHHHHhcCCC-CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCE
Q 000463 712 YVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDI 790 (1479)
Q Consensus 712 yv~Q~~~i~~~Tv~enI~fg~~-~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 790 (1479)
|++|++++++.|++||+.++.+ .......+..+...+.+.++.++.|..+..++++.+|||||||||+||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999999999999998653 222233334444566666777877877778889999999999999999999999999
Q ss_pred EEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcCcchHH
Q 000463 791 YLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGA 864 (1479)
Q Consensus 791 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~f~~ 864 (1479)
+||||||++||+.+.+.+.+.+.+. .+|+|+|++||+++++..||++++|++|++++.|+++++.+..+.+..
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 232 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDI-CAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAY 232 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHH
Confidence 9999999999999999998765544 468999999999999988999999999999999999998776554443
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=356.41 Aligned_cols=197 Identities=28% Similarity=0.449 Sum_probs=172.1
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ..++++++
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence 478999999964 45999999999999999999999999999999999999999999999999997654 35778999
Q ss_pred EcCcccccc-ccHhhhcCCC-C--CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHh
Q 000463 1348 IPQEPVLFE-GTVRSNIDPI-G--QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1348 IpQdp~LF~-gTIR~NLdp~-~--~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1419 (1479)
+||+|.+|. .|+++|+... . ..+ ++++.++++..++.+.....| .+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-----------HELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHHHHHHH
Confidence 999998886 5999999632 1 112 345778888888877655443 36899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+++|++|||||||++||+++.+.+.+.|++..+ ++|||+|+|+++.+.+ ||+|++|++|+
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~ 208 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGR 208 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999998643 7899999999999876 99999999985
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=368.95 Aligned_cols=202 Identities=27% Similarity=0.462 Sum_probs=180.0
Q ss_pred cEEEEeeeeeecCC-CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcce
Q 000463 1267 NVDLIDLQVRYRSN-TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRF 1345 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1345 (1479)
.++++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743 34599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcCcc--ccccccHhhhcCCCC---CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHH
Q 000463 1346 GIIPQEP--VLFEGTVRSNIDPIG---QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLG 1416 (1479)
Q Consensus 1346 ~iIpQdp--~LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1416 (1479)
+++||+| .++..||++||.... ..+ ++++.++++.+++.++....| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 356779999996321 123 356788999999987766554 36899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1417 RVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1417 RALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|||+++|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||||++|++|+
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~ 217 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQ 217 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999998753 789999999999997899999999995
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=355.81 Aligned_cols=201 Identities=29% Similarity=0.471 Sum_probs=173.9
Q ss_pred EEEEeeeeeecCCC--CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhh---h
Q 000463 1268 VDLIDLQVRYRSNT--PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL---R 1342 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L---R 1342 (1479)
++++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..+. |
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996432 359999999999999999999999999999999999999999999999999988876543 4
Q ss_pred -cceEEEcCcccccc-ccHhhhcCCC---CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHH
Q 000463 1343 -SRFGIIPQEPVLFE-GTVRSNIDPI---GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLL 1413 (1479)
Q Consensus 1343 -~~i~iIpQdp~LF~-gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1413 (1479)
++++++||+|.+|. .|+++|+... ...+ ++++.++++..++.+.....| ..||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP-----------SELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHH
Confidence 67999999999986 5999999631 1222 345677888887765544333 46899999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1414 CLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1414 ~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
+||||++++|+||||||||++||.++.+.+.+.|++.. .++|+|+|+|+++.+..||+|++|++|+
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~ 218 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQ 218 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCE
Confidence 99999999999999999999999999999999999864 3789999999999998899999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=368.05 Aligned_cols=201 Identities=25% Similarity=0.435 Sum_probs=179.9
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
-|+++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.+.+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999643 35999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEcCcc--ccccccHhhhcCCCC---CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHH
Q 000463 1347 IIPQEP--VLFEGTVRSNIDPIG---QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGR 1417 (1479)
Q Consensus 1347 iIpQdp--~LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1417 (1479)
++||+| .+|..|+++|+.... ..+ ++++.++++.+++.+.....|. .||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPY-----------HLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChh-----------hCCHHHHHHHHHHH
Confidence 999998 688899999996321 122 3567889999999877666553 58999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1418 VMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1418 ALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||+++|++|||||||++||+.+...+.+.|++.. +++|||++||+++.+.. ||||++|++|+
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~ 215 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGR 215 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999874 47899999999999865 99999999995
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=344.75 Aligned_cols=173 Identities=33% Similarity=0.604 Sum_probs=162.1
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
|+++|++++|+...+++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|+++++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 578999999975434699999999999999999999999999999999999999999999999998776 6678899999
Q ss_pred EcCccccccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEE
Q 000463 1348 IPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLF 1427 (1479)
Q Consensus 1348 IpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILi 1427 (1479)
+||+|.+|+.|+++|+ ..+||+|||||++||||++++|++||
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 34799999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1428 MDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1428 LDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|||||++||..+.+.+.+.|++..+++|+|+++|+++.+..|||+++|++|+
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 173 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGK 173 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 9999999999999999999998877899999999999998899999999985
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=338.99 Aligned_cols=201 Identities=28% Similarity=0.503 Sum_probs=180.0
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCC---hhhhhc
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG---LHDLRS 1343 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~---l~~LR~ 1343 (1479)
.|+++||+.+|+.+ ..+|+||||+|++||.|||+|+||||||||+++|.|+.+|++|+|.++|.++..+. ++++|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 58999999999844 56999999999999999999999999999999999999999999999999999987 677889
Q ss_pred ceEEEcCccccccc-cHhhhcCC------------CCCCC---HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCc
Q 000463 1344 RFGIIPQEPVLFEG-TVRSNIDP------------IGQYS---DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSV 1407 (1479)
Q Consensus 1344 ~i~iIpQdp~LF~g-TIR~NLdp------------~~~~s---d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSg 1407 (1479)
++|+|+|.+.|-.. |+-+|+.. |+-++ ..+..+||+++|+.+..-.. .++|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr-----------a~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR-----------ASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH-----------hccCCc
Confidence 99999999998765 99999841 23333 35578899999998876543 346899
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1408 GQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1408 GQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||+||++|||||.++|+|++-|||+|+||+++.+.|++.|++.. .|.|||+.-|.++..++ ||||+-|++|+
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ 225 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGR 225 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCc
Confidence 99999999999999999999999999999999999999999865 47899999999999987 99999999996
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=358.73 Aligned_cols=202 Identities=26% Similarity=0.420 Sum_probs=176.0
Q ss_pred cEEEEeeeeeecCCC--CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhh---h
Q 000463 1267 NVDLIDLQVRYRSNT--PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD---L 1341 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---L 1341 (1479)
-++++||+++|+.+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.++ +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997532 46999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cceEEEcCccccccc-cHhhhcCC---CCCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHH
Q 000463 1342 R-SRFGIIPQEPVLFEG-TVRSNIDP---IGQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQL 1412 (1479)
Q Consensus 1342 R-~~i~iIpQdp~LF~g-TIR~NLdp---~~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1412 (1479)
| ++++++||+|.+|.+ |+++|+.. +...+ ++++.++++..++.+..... ..+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHR-----------PSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHH
Confidence 3 679999999999876 99999853 11222 34577888888886654433 34699999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1413 LCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1413 l~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
++||||++++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+..+|++++|++|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~ 222 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGR 222 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCE
Confidence 999999999999999999999999999999999999864 4789999999999999999999999985
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=333.12 Aligned_cols=466 Identities=21% Similarity=0.284 Sum_probs=336.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceecccCchhhHHHHhchhhHhhhhhHHHHHH
Q 000463 988 LFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGI 1067 (1479)
Q Consensus 988 ~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~il~~p~~fFd~~~~G~ilnR~s~D~~~id~~l~~~~~~ 1067 (1479)
.++.-|+++..+..+...+........|...-.+++.++.++++.+|+.-+++-..++++.++++|+..|. +-...+..
T Consensus 49 ~~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~ 127 (546)
T COG4615 49 LVLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPE 127 (546)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHH
Confidence 44555566666666777777888889999999999999999999999999999999999999999999998 33334455
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcHHHHHHhCcHHH
Q 000463 1068 TVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTT 1147 (1479)
Q Consensus 1068 ~~~~~~~~~~~~~v~~~~~~~~~~~~ip~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~ 1147 (1479)
+.+..+.++++.+..++.+|+++.+.+..+++.++.+...++..-+-.+...++...++.+++-.++|.+..+..+...+
T Consensus 128 ~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~ 207 (546)
T COG4615 128 LVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAE 207 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHH
Confidence 67777888899999999999987766555554444333222222222222333455688899999999999988765443
Q ss_pred HHHHHHH------HHHHHhhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhccCCcChhHHHHHHHHH---HHHHHH
Q 000463 1148 FYQENVN------RVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPENVGLSLSYG---LSLNGV 1218 (1479)
Q Consensus 1148 f~~~~~~------~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~g~vgl~l~y~---~~l~~~ 1218 (1479)
....+.. .-+...+.......+..|-.+.+-.+... .+-+....+.-+.. .+.+++ +-+-++
T Consensus 208 ~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGl------vf~lal~~~w~st~---~a~tivlvlLflr~p 278 (546)
T COG4615 208 YVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGL------VFWLALSLGWASTN---VAATIVLVLLFLRTP 278 (546)
T ss_pred HHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH------HHHHHHhhccchhh---HHHHHHHHHHHHhhH
Confidence 3322111 11111112222223344444332211111 11111111111111 222233 334567
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcCccchhccccCCCCCCCCCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEE
Q 000463 1219 LFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKI 1298 (1479)
Q Consensus 1219 l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Gekv 1298 (1479)
+..++.....+-...++..||.++...|..+.. ....+.|+| ..||++||.|.|.++. .-+..||++|+.||.|
T Consensus 279 L~s~vgilP~l~~AqvA~~kiakle~~~~~a~~--~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelv 352 (546)
T COG4615 279 LLSAVGILPTLLTAQVAFNKIAKLELAPYKADF--PRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELV 352 (546)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhcCCccccC--CCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEE
Confidence 777888888888999999999988764332211 112223335 4799999999998764 4588999999999999
Q ss_pred EEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCccccccccHhhhcCCCCCCCHHHHHHHH
Q 000463 1299 GVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSL 1378 (1479)
Q Consensus 1299 gIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL 1378 (1479)
=|+|.|||||||++++|.|+|.|++|+|++||.+++.-++++.|+-++-|.-|-+||+.++ -|-+..+.+.|..-|
T Consensus 353 FliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~L 428 (546)
T COG4615 353 FLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWL 428 (546)
T ss_pred EEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998765 233447888888888
Q ss_pred HHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEE
Q 000463 1379 ERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTI 1456 (1479)
Q Consensus 1379 ~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~Tv 1456 (1479)
++..+.....-..+.+ + -..||-|||.|+++--|++.+.+|+++||=-|.-||.=.+...+.+--.. .|+||
T Consensus 429 qrLel~~ktsl~d~~f-s-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI 502 (546)
T COG4615 429 QRLELAHKTSLNDGRF-S-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTI 502 (546)
T ss_pred HHHHHhhhhcccCCcc-c-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeE
Confidence 8776665443322222 1 12589999999999999999999999999999999999998877654433 59999
Q ss_pred EEEccChhhhhhcCEEEEEeCCC
Q 000463 1457 ISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1457 I~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
+.|+|+-+--..+||++.|++|+
T Consensus 503 ~aIsHDd~YF~~ADrll~~~~G~ 525 (546)
T COG4615 503 FAISHDDHYFIHADRLLEMRNGQ 525 (546)
T ss_pred EEEecCchhhhhHHHHHHHhcCc
Confidence 99999999999999999999996
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=355.52 Aligned_cols=200 Identities=24% Similarity=0.463 Sum_probs=174.8
Q ss_pred EEEEeeeeeecCCC--CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcce
Q 000463 1268 VDLIDLQVRYRSNT--PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRF 1345 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1345 (1479)
++++|++++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999997432 269999999999999999999999999999999999999999999999999975 456778999
Q ss_pred EEEcCccccccc-cHhhhcCCC---CCC----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHH
Q 000463 1346 GIIPQEPVLFEG-TVRSNIDPI---GQY----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGR 1417 (1479)
Q Consensus 1346 ~iIpQdp~LF~g-TIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1417 (1479)
+++||+|.+|.+ |+++|+... ... .++++.++++..++.+..... ..+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRR-----------VGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhh-----------hhhcCHHHHHHHHHHH
Confidence 999999999986 999999521 112 235678888888887665433 3468999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1418 VMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1418 ALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++++|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.+ ||||++|++|+
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 213 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGR 213 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 9999999999999999999999999999999864 47899999999999876 99999999995
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=355.81 Aligned_cols=200 Identities=26% Similarity=0.413 Sum_probs=174.4
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
++++||+++|+.+..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.... .++|+++++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5789999999753345999999999999999999999999999999999999999999999999987643 667889999
Q ss_pred EcCccccc-cccHhhhcCCCC---CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHh
Q 000463 1348 IPQEPVLF-EGTVRSNIDPIG---QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1348 IpQdp~LF-~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1419 (1479)
+||+|.+| ..|+++|+.... ..+ ++++.++++..++.+..... ..+||+|||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKR-----------ARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhCh-----------hhhCCHHHHHHHHHHHHH
Confidence 99999998 579999995311 122 34577888888886654332 236999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+++|++|||||||++||+.+.+.+.+.|++..+++|+|+++|+++.+.. ||+|++|++|+
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 9999999999999999999999999999998778999999999999976 99999999985
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=358.10 Aligned_cols=200 Identities=29% Similarity=0.492 Sum_probs=177.4
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.|+...+..++|++++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999964 35999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcCccccccccHhhhcCCCC---CCCHHHHHHHHHHcCch-HHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccC
Q 000463 1347 IIPQEPVLFEGTVRSNIDPIG---QYSDEEIWKSLERCQLK-DVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKH 1422 (1479)
Q Consensus 1347 iIpQdp~LF~gTIR~NLdp~~---~~sd~eI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~ 1422 (1479)
++||+|.+|+.|+++|+.... ...++++.++++..++. +.... ...+||||||||++||||++++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATR-----------DVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhC-----------CcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999997422 22345678888888885 33322 3457999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1423 SRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1423 ~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++|||||||++||.++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|+
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~ 209 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGI 209 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCE
Confidence 99999999999999999999999999864 37899999999999886 99999999985
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=368.17 Aligned_cols=202 Identities=34% Similarity=0.530 Sum_probs=174.6
Q ss_pred cEEEEeeeeeecCCC---CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCC--hhhh
Q 000463 1267 NVDLIDLQVRYRSNT---PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG--LHDL 1341 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~--l~~L 1341 (1479)
.|+++||+++|+... .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999997532 36999999999999999999999999999999999999999999999999998754 4578
Q ss_pred hcceEEEcCcc--ccccccHhhhcCCCC---CCCH----HHHHHHHHHcCch--HHHHhCcCCccccccCCCCCCCchHH
Q 000463 1342 RSRFGIIPQEP--VLFEGTVRSNIDPIG---QYSD----EEIWKSLERCQLK--DVVAAKPDKLDSLVADSGDNWSVGQR 1410 (1479)
Q Consensus 1342 R~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sd----~eI~~aL~~~~L~--~~i~~lp~gLdt~v~e~G~nLSgGQr 1410 (1479)
|++++|+||+| .+|+.|+++|+.... ..++ +++.++++.++|. +... .....||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~~~LSgGq~ 150 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKD-----------KSPFELSGGQK 150 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhcc-----------CCcccCCHHHH
Confidence 89999999998 578899999996321 2333 3567888888885 3222 22357999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1411 QLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1411 Qrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||++|||||+.+|+||||||||++||+.+...+.+.|++..+ +.|||+|||+++.+.. ||||++|++|+
T Consensus 151 qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~ 222 (287)
T PRK13637 151 RRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGK 222 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999998753 7899999999999865 99999999985
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=360.25 Aligned_cols=200 Identities=31% Similarity=0.507 Sum_probs=173.9
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCC---hhhhhcc
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG---LHDLRSR 1344 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~---l~~LR~~ 1344 (1479)
++++|++++|+.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999642 45999999999999999999999999999999999999999999999999998876 4567889
Q ss_pred eEEEcCcccccc-ccHhhhcCCC------------C---CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCch
Q 000463 1345 FGIIPQEPVLFE-GTVRSNIDPI------------G---QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVG 1408 (1479)
Q Consensus 1345 i~iIpQdp~LF~-gTIR~NLdp~------------~---~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1408 (1479)
++++||++.+|. .|+++|+... + ...++++.++++..++.+.... ...+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQ-----------RADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCC-----------CcccCCHH
Confidence 999999998887 6999999521 1 1123457778888877654332 34579999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1409 QRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1409 QrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||||++|||||+++|+||||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.+ ||+|++|++|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~ 222 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR 222 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999875 37899999999999985 99999999985
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=361.46 Aligned_cols=206 Identities=27% Similarity=0.419 Sum_probs=178.9
Q ss_pred CccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCEecCC--CC
Q 000463 1265 HGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE-----PSGGRIIIDGIDISL--LG 1337 (1479)
Q Consensus 1265 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~ 1337 (1479)
.+.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 467999999999964 359999999999999999999999999999999999986 589999999999863 45
Q ss_pred hhhhhcceEEEcCccccccccHhhhcCCC----CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchH
Q 000463 1338 LHDLRSRFGIIPQEPVLFEGTVRSNIDPI----GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQ 1409 (1479)
Q Consensus 1338 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1409 (1479)
...+|++++++||+|.+|..|+++|+... ...+ +++++++++.+++.+.+. ....+...+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHHH
Confidence 66789999999999999999999999632 1222 356788899888854432 12334456899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1410 RQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1410 rQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||++|||||+++|+||||||||++||.++.+.+.+.|++..++.|+|+|||+++.+.. ||||++|++|+
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 232 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGE 232 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999988677899999999999876 99999999985
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=365.38 Aligned_cols=202 Identities=27% Similarity=0.458 Sum_probs=181.1
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.++++||+++|+...+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999754456999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcCcc--ccccccHhhhcCCCC---CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHH
Q 000463 1347 IIPQEP--VLFEGTVRSNIDPIG---QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGR 1417 (1479)
Q Consensus 1347 iIpQdp--~LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1417 (1479)
|+||+| .+++.|+++||.... ..+ ++++.++++.++|.+++...|. .||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----------~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPH-----------RLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcc-----------cCCHHHHHHHHHHH
Confidence 999998 466789999996421 123 3457888999999887776653 68999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1418 VMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1418 ALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||+++|+++.+..||||++|++|+
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~ 217 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGE 217 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCE
Confidence 99999999999999999999999999999998764 789999999999998899999999985
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=354.57 Aligned_cols=213 Identities=32% Similarity=0.513 Sum_probs=185.4
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------eEE
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------TTA 711 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~ia 711 (1479)
++++|+++.|++..++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999643335799999999999999999999999999999999999999999999987 289
Q ss_pred EEeccCcCCCCcHHHHHhcCCCC-ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCE
Q 000463 712 YVAQTSWIQNGTIEENILFGLPM-NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDI 790 (1479)
Q Consensus 712 yv~Q~~~i~~~Tv~enI~fg~~~-~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 790 (1479)
|++|++.+++.|++||+.++... ..+...+..+.+.+.+.++.++.|.++..+....+|||||||||+||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999998888999999987543 22333445566677777778887887888888999999999999999999999999
Q ss_pred EEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhc
Q 000463 791 YLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 791 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
+||||||++||+++++.+.+.+.... +|+|+|++||+++++..||++++|++|++++.|+.+++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 99999999999999999887665544 78999999999999888999999999999999988877653
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=351.32 Aligned_cols=197 Identities=29% Similarity=0.475 Sum_probs=174.7
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
|+++|++++|+. .++|+|+||++++| ++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|+++++
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 578999999964 35999999999999 99999999999999999999999999999999999998776 778999999
Q ss_pred EcCccccccc-cHhhhcCCC---CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHh
Q 000463 1348 IPQEPVLFEG-TVRSNIDPI---GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1348 IpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1419 (1479)
+||+|.+|.+ |+++|+... ...+ ++++.++++.+++.+.....+ .+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKI-----------GSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCch-----------hhCCHHHHHHHHHHHHH
Confidence 9999999986 999998631 1122 356788899999876543322 36999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+++|++|+|||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|+
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~ 206 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGK 206 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999988777999999999999976 99999999985
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=350.49 Aligned_cols=197 Identities=26% Similarity=0.426 Sum_probs=175.0
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
|+++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++.+. .++|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 578999999953 4599999999999999999999999999999999999999999999999998764 567889999
Q ss_pred EcCccccc-cccHhhhcCCC---CCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCC
Q 000463 1348 IPQEPVLF-EGTVRSNIDPI---GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHS 1423 (1479)
Q Consensus 1348 IpQdp~LF-~gTIR~NLdp~---~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1423 (1479)
+||++.+| ..|+++|+... ...+++++.++++..++.+.....+ ..||+|||||++||||++++|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKV-----------KGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhH-----------hhCCHHHHHHHHHHHHHhcCC
Confidence 99999887 56999999632 1235778899999999987654432 368999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1424 RLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1424 ~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
++|+|||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~ 203 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGK 203 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 9999999999999999999999999865 47899999999999976 99999999995
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=361.88 Aligned_cols=198 Identities=28% Similarity=0.455 Sum_probs=180.8
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.|+++|++.+|.... ||+|+|++|+.||.++|+||||||||||+++|.||.+|++|+|.|||.|++++++++ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999998543 999999999999999999999999999999999999999999999999999998886 7899
Q ss_pred EEcCccccccc-cHhhhcCC-CC--C----CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHH
Q 000463 1347 IIPQEPVLFEG-TVRSNIDP-IG--Q----YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRV 1418 (1479)
Q Consensus 1347 iIpQdp~LF~g-TIR~NLdp-~~--~----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1418 (1479)
+|+|+..||.- ||++||.. .. . --++++.++++..++.+...++|.. ||||||||++||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~-----------LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQ-----------LSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCccc-----------CChhhHHHHHHHHH
Confidence 99999999977 99999973 21 1 2367789999999999999999864 69999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1419 MLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1419 LLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|.++|++++||||.|+||......+...|++..+ +.|+|.|||+-...+. +|||.||++|+
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~ 211 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGR 211 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCe
Confidence 9999999999999999999999999888887553 5899999999999887 99999999995
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=359.93 Aligned_cols=204 Identities=27% Similarity=0.423 Sum_probs=176.8
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCEecCC--CChh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE-----PSGGRIIIDGIDISL--LGLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~l~ 1339 (1479)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999964 359999999999999999999999999999999999975 689999999999875 3455
Q ss_pred hhhcceEEEcCccccccccHhhhcCCC----CC----CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHH
Q 000463 1340 DLRSRFGIIPQEPVLFEGTVRSNIDPI----GQ----YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
.+|++++++||++.+|.+|+++|+... +. ..++++.++++.+++.+.+.. .......+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHHH
Confidence 778999999999999999999999631 11 124567888999888664432 123345689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|||+++|+++.+.. ||||++|++|+
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~ 225 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGK 225 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999987667899999999999976 99999999985
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=374.22 Aligned_cols=201 Identities=32% Similarity=0.507 Sum_probs=175.8
Q ss_pred EEEEeeeeeecC--CCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhh---hh
Q 000463 1268 VDLIDLQVRYRS--NTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD---LR 1342 (1479)
Q Consensus 1268 I~~~nvs~~Y~~--~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---LR 1342 (1479)
|+++|++++|+. ...++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999973 2346999999999999999999999999999999999999999999999999999887654 47
Q ss_pred cceEEEcCcccccc-ccHhhhcCCC---CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHH
Q 000463 1343 SRFGIIPQEPVLFE-GTVRSNIDPI---GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLC 1414 (1479)
Q Consensus 1343 ~~i~iIpQdp~LF~-gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1414 (1479)
++|+++||++.+|. .|+++|+... ...+ ++++.++++..++.+.....| .+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYP-----------AQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999886 6999999632 1222 245777888888876654433 468999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1415 LGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1415 LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||||+++|+||+|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|+
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~ 218 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGR 218 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999998753 7899999999999987 99999999985
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=334.72 Aligned_cols=202 Identities=31% Similarity=0.543 Sum_probs=177.9
Q ss_pred CccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChh---hh
Q 000463 1265 HGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLH---DL 1341 (1479)
Q Consensus 1265 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~---~L 1341 (1479)
.-.|++++|+++|.. ..|++||||+|++||..||+|+||||||||++++.|+..|++|+|.|+|.||.+++-+ .+
T Consensus 6 ~~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 6 EPLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred cceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 346999999999964 4599999999999999999999999999999999999999999999999999999865 46
Q ss_pred hcceEEEcCccccccc-cHhhhcC-CCCCC---CHHHHH----HHHHHcCchHH-HHhCcCCccccccCCCCCCCchHHH
Q 000463 1342 RSRFGIIPQEPVLFEG-TVRSNID-PIGQY---SDEEIW----KSLERCQLKDV-VAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1342 R~~i~iIpQdp~LF~g-TIR~NLd-p~~~~---sd~eI~----~aL~~~~L~~~-i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
|+++|+++|...||+. ||+||+. |..+| +++++. .-|+.+||... ....| +.||||.|.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~K 152 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRK 152 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHH
Confidence 9999999999999987 9999996 44444 455443 45778888776 33444 358999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++||||+.-+|+||++|||||+||+-+...+-+.|++.. -+.|+++|||+++++.. ||||+++.+|+
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gk 223 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGK 223 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCE
Confidence 9999999999999999999999999999999988888764 37899999999999988 89999999986
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=357.65 Aligned_cols=200 Identities=33% Similarity=0.476 Sum_probs=173.2
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCCh---hhhhcc
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGL---HDLRSR 1344 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l---~~LR~~ 1344 (1479)
++++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 6899999999622 459999999999999999999999999999999999999999999999999987654 446889
Q ss_pred eEEEcCcccccc-ccHhhhcCCCC---------------CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCch
Q 000463 1345 FGIIPQEPVLFE-GTVRSNIDPIG---------------QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVG 1408 (1479)
Q Consensus 1345 i~iIpQdp~LF~-gTIR~NLdp~~---------------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1408 (1479)
++++||++.+|. .|+++|+.... ...++++.++++.+++.+.... ...+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQ-----------RADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHH
Confidence 999999998886 59999995210 0123467788888888655433 23579999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1409 QRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1409 QrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||||++|||||+++|+||||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.+ ||+|++|++|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~ 223 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGE 223 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 99999999999999999999999999999999999999998743 7899999999999976 99999999985
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=348.00 Aligned_cols=209 Identities=30% Similarity=0.476 Sum_probs=173.5
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe--------------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------- 709 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------- 709 (1479)
.++++|++|+|++. .++|+|+|+++++||.++|+|+||||||||++.+.|.++|++|.|.++|.
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 57899999999754 68999999999999999999999999999999999999999999998873
Q ss_pred EEEEeccC--cCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcC
Q 000463 710 TAYVAQTS--WIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD 787 (1479)
Q Consensus 710 iayv~Q~~--~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 787 (1479)
+|||+|+| .++..||.|.|.||.......-+++.+ ...+-++.....+ ...+...+|||||||||+||.+|..+
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~--rv~~~l~~vgl~~--~~~r~p~~LSGGqkqRvaIA~vLa~~ 156 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEE--RVAEALELVGLEE--LLDRPPFNLSGGQKQRVAIAGVLAMG 156 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHH--HHHHHHHHcCchh--hccCCccccCCcceeeHHhhHHHHcC
Confidence 89999999 578999999999996532111111100 1112222222222 13467789999999999999999999
Q ss_pred CCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000463 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 788 ~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
|+++|||||||+||+..++.+.+.+.+...+ |+|+|++|||++.+.. ||++++|++|+++.+|++.++.+.
T Consensus 157 P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 157 PEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999877666655 7999999999999876 999999999999999999888753
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=349.82 Aligned_cols=200 Identities=26% Similarity=0.411 Sum_probs=173.9
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhh---hhcc
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD---LRSR 1344 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---LR~~ 1344 (1479)
|+++|++++|+.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++.+. +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 45999999999999999999999999999999999999999999999999998876544 6889
Q ss_pred eEEEcCccccc-cccHhhhcCCC---CCCCH----HHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHH
Q 000463 1345 FGIIPQEPVLF-EGTVRSNIDPI---GQYSD----EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLG 1416 (1479)
Q Consensus 1345 i~iIpQdp~LF-~gTIR~NLdp~---~~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1416 (1479)
++++||+|.+| ..|+++|+... ...++ +++.++++..++.+.....| .+||+|||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP-----------IQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------hhCCHHHHHHHHHH
Confidence 99999999874 66999999632 12232 34677888888876654433 46899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1417 RVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1417 RALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||++++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||||++|++|+
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 214 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGH 214 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999864 46899999999999987 89999999985
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=359.56 Aligned_cols=206 Identities=25% Similarity=0.417 Sum_probs=177.2
Q ss_pred CCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCEecCC--
Q 000463 1263 PAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE-----PSGGRIIIDGIDISL-- 1335 (1479)
Q Consensus 1263 p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~-- 1335 (1479)
|....++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++..
T Consensus 9 ~~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 9 SKNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred CCCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34457999999999964 359999999999999999999999999999999999987 689999999999863
Q ss_pred CChhhhhcceEEEcCccccccccHhhhcCCCC---CC---CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchH
Q 000463 1336 LGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIG---QY---SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQ 1409 (1479)
Q Consensus 1336 i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~---sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1409 (1479)
.+..++|++++++||+|.+|.+|+++|+.... .. .++++.++++.+++.+.+. ........+||+||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 159 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQ 159 (269)
T ss_pred CCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHH
Confidence 46677889999999999999999999997432 11 2456777888887754332 12233446799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeC
Q 000463 1410 RQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDA 1477 (1479)
Q Consensus 1410 rQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~ 1477 (1479)
|||++|||||+++|+||||||||++||+.+...+.+.|++..+++|||+|||+++.+.+ ||||++|++
T Consensus 160 ~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 99999999999999999999999999999999999999988677899999999999976 999999997
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=351.30 Aligned_cols=192 Identities=30% Similarity=0.494 Sum_probs=168.4
Q ss_pred EEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEE
Q 000463 1269 DLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGII 1348 (1479)
Q Consensus 1269 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iI 1348 (1479)
+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++++
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 36899999964 35999999999999999999999999999999999999999999999998874 578899999
Q ss_pred cCcccc---ccccHhhhcCCCCC-----------CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHH
Q 000463 1349 PQEPVL---FEGTVRSNIDPIGQ-----------YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLC 1414 (1479)
Q Consensus 1349 pQdp~L---F~gTIR~NLdp~~~-----------~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1414 (1479)
||+|.+ |..|+++|+..... ..++++.++++..++.+.....+ .+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----------GELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHH
Confidence 999976 66899999963211 12356888999999877654432 368999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCC
Q 000463 1415 LGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAG 1478 (1479)
Q Consensus 1415 LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G 1478 (1479)
|||||+++|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~ 208 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc
Confidence 9999999999999999999999999999999999865 57899999999999977 9999999987
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=354.98 Aligned_cols=198 Identities=26% Similarity=0.428 Sum_probs=171.7
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 3789999999964 459999999999999999999999999999999999999999999999999876543 367899
Q ss_pred EEcCcccccc-ccHhhhcCCCC---CC----C----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHH
Q 000463 1347 IIPQEPVLFE-GTVRSNIDPIG---QY----S----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLC 1414 (1479)
Q Consensus 1347 iIpQdp~LF~-gTIR~NLdp~~---~~----s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1414 (1479)
++||+|.+|. .|+++|+.... .. + ++++.++++..++.+.....+ .+||+|||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----------AQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHH
Confidence 9999999986 59999996421 11 1 245677788888866554433 468999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1415 LGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1415 LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~ 214 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGR 214 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 99999999999999999999999999999999998653 7899999999998876 99999999985
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=359.54 Aligned_cols=204 Identities=26% Similarity=0.404 Sum_probs=176.8
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCEecCC--CChh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP-----SGGRIIIDGIDISL--LGLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~--i~l~ 1339 (1479)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 6999999999964 3599999999999999999999999999999999999997 48999999999863 3455
Q ss_pred hhhcceEEEcCccccccccHhhhcCCCC----CC----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHH
Q 000463 1340 DLRSRFGIIPQEPVLFEGTVRSNIDPIG----QY----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~----~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
.+|++++|+||+|.+|..|+++|+.... .. .++++.++++.+++.+.+. +.+|+ ...+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~----~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---DKLNT----NALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---HHHhC----CcccCCHHHHH
Confidence 6788999999999999999999996321 11 2456788888888754432 23444 34679999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++|||||+++|++|||||||++||..+...+.+.|++..+++|+|+|+|+++.+.+ ||||++|++|+
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~ 226 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGC 226 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999998778899999999999876 99999999985
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=352.01 Aligned_cols=196 Identities=27% Similarity=0.403 Sum_probs=171.3
Q ss_pred EEEEeeeeeecCCC--CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcce
Q 000463 1268 VDLIDLQVRYRSNT--PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRF 1345 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1345 (1479)
++++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999997421 469999999999999999999999999999999999999999999999999863 46789
Q ss_pred EEEcCcccccc-ccHhhhcCCC---CCC----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHH
Q 000463 1346 GIIPQEPVLFE-GTVRSNIDPI---GQY----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGR 1417 (1479)
Q Consensus 1346 ~iIpQdp~LF~-gTIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1417 (1479)
+++||+|.+|. .|+++|+... ... .++++.+++++.++.+.....+ .+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999987 6999999631 111 2456788999999877665554 368999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhh-cCEEEEEe--CCC
Q 000463 1418 VMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVD--AGL 1479 (1479)
Q Consensus 1418 ALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~--~G~ 1479 (1479)
||+++|++|||||||++||+.+.+.+.+.|++.. .++|||+|+|+++.+.+ ||+|++|+ +|+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 9999999999999999999999999999999864 37899999999998876 99999999 685
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=349.97 Aligned_cols=199 Identities=31% Similarity=0.518 Sum_probs=173.1
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCC--CChhhhhcce
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISL--LGLHDLRSRF 1345 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~--i~l~~LR~~i 1345 (1479)
++++|++++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 478999999964 359999999999999999999999999999999999999999999999999853 3456678999
Q ss_pred EEEcCcccccc-ccHhhhcCCC----CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHH
Q 000463 1346 GIIPQEPVLFE-GTVRSNIDPI----GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLG 1416 (1479)
Q Consensus 1346 ~iIpQdp~LF~-gTIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1416 (1479)
+++||+|.+|. .|+++|+... ...+ ++++.++++..++.+.....| .+||+|||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc-----------cccCHHHHHHHHHH
Confidence 99999999886 5999999642 1222 235677788887766554443 46899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1417 RVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1417 RALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||++++|++|||||||++||+++.+.+.+.|++.. .++|+|+++|+++.+.+ ||+|++|++|+
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999999999999999999864 47899999999999976 99999999996
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=355.73 Aligned_cols=199 Identities=30% Similarity=0.499 Sum_probs=170.8
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhh-hcceE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL-RSRFG 1346 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~i~ 1346 (1479)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999963 359999999999999999999999999999999999999999999999999988876664 57799
Q ss_pred EEcCccccccc-cHhhhcCCCC----CC-------------CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCch
Q 000463 1347 IIPQEPVLFEG-TVRSNIDPIG----QY-------------SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVG 1408 (1479)
Q Consensus 1347 iIpQdp~LF~g-TIR~NLdp~~----~~-------------sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1408 (1479)
++||+|.+|.+ |+++|+.... .. .++++.++++..++.+.. ......||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG 147 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLA-----------DRPAGELSYG 147 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchh-----------hCChhhCCHH
Confidence 99999999987 9999985321 10 123455666666664432 2234579999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1409 QRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1409 QrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 220 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGR 220 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999865 57899999999999977 99999999985
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=350.22 Aligned_cols=215 Identities=33% Similarity=0.527 Sum_probs=187.2
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-------------EE
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------TA 711 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------ia 711 (1479)
++++|+++.|++ ++++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|. ++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 468899999953 246999999999999999999999999999999999999999999999882 79
Q ss_pred EEeccCcCCCCcHHHHHhcCCCC-ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCE
Q 000463 712 YVAQTSWIQNGTIEENILFGLPM-NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDI 790 (1479)
Q Consensus 712 yv~Q~~~i~~~Tv~enI~fg~~~-~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 790 (1479)
|++|++++++.|++||+.++... ......+..+.+.+.+.+..++.|.++.++.++.+||||||||++||||++.+|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987542 22233445666677777888888888888889999999999999999999999999
Q ss_pred EEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcCcch
Q 000463 791 YLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDF 862 (1479)
Q Consensus 791 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~~f 862 (1479)
+||||||++||+++.+.+.+.+.+... |+|+|++||+++.+..||++++|++|++++.|+.+++......+
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~ 229 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLY 229 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHH
Confidence 999999999999999999876654444 89999999999999889999999999999999988876644333
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=355.90 Aligned_cols=198 Identities=27% Similarity=0.434 Sum_probs=179.9
Q ss_pred CccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcc
Q 000463 1265 HGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSR 1344 (1479)
Q Consensus 1265 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1344 (1479)
.+.|+++|++++ + .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 37 ~~~l~i~nls~~---~-~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLV---G-APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEe---c-ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 456999999996 2 3599999999999999999999999999999999999999999999998 4
Q ss_pred eEEEcCccccccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCC
Q 000463 1345 FGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSR 1424 (1479)
Q Consensus 1345 i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1424 (1479)
++|+||++.+|++|+++|+.......+.++.++++.+++.+.+..+|.++++.+.+.+.+||+|||||++|||||+++|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997543345566778889999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHH-HHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1425 LLFMDEATASVDSQTDAEIQRI-IREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1425 ILiLDEaTs~lD~~Te~~Iq~~-I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
||||||||++||+++...+.+. +++..++.|||+|||+++.+..||+|++|++|+
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~ 235 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGS 235 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCE
Confidence 9999999999999999988765 455556899999999999998899999999985
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=349.96 Aligned_cols=214 Identities=35% Similarity=0.542 Sum_probs=186.3
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-------------EE
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------TA 711 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------ia 711 (1479)
|+++|++++|++. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999632 236999999999999999999999999999999999999999999999872 79
Q ss_pred EEeccCcCCCCcHHHHHhcCCCC-ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCE
Q 000463 712 YVAQTSWIQNGTIEENILFGLPM-NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDI 790 (1479)
Q Consensus 712 yv~Q~~~i~~~Tv~enI~fg~~~-~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 790 (1479)
|++|++++++.|++||+.++... ....+.+..+.+.+.+.++.++.|..+..+.++.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999989999999987542 33344455566677788888887777788889999999999999999999999999
Q ss_pred EEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhcCc
Q 000463 791 YLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGM 860 (1479)
Q Consensus 791 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~~~ 860 (1479)
+||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.++.||++++|++|++++.|+++++.....
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 228 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERL-MKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGG 228 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCc
Confidence 9999999999999999987655444 46899999999999988899999999999999999988765443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=349.63 Aligned_cols=197 Identities=28% Similarity=0.453 Sum_probs=171.9
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ++++++
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 578999999964 3599999999999999999999999999999999999999999999999999766543 568999
Q ss_pred EcCcccccc-ccHhhhcCCC---CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHh
Q 000463 1348 IPQEPVLFE-GTVRSNIDPI---GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1348 IpQdp~LF~-gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1419 (1479)
+||++.+|. .|+++|+... ...+ ++++.++++..++.+.....| .+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----------KQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999885 5999999642 1122 345677888888877655443 36899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+++|+||+|||||++||+++.+.+.+.|++.. .++|||+|+|+++.+.+ ||+|++|++|+
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~ 208 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQ 208 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 99999999999999999999999999999864 37899999999999887 99999999985
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=363.87 Aligned_cols=202 Identities=28% Similarity=0.414 Sum_probs=172.2
Q ss_pred cEEEEeeeeeecCCC---CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCC----Chh
Q 000463 1267 NVDLIDLQVRYRSNT---PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLL----GLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i----~l~ 1339 (1479)
.++++|++++|+.+. +++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996432 3599999999999999999999999999999999999999999999999999754 346
Q ss_pred hhhcceEEEcCcc--ccccccHhhhcCCCC---CCCH----HHHHHHHHHcCch-HHHHhCcCCccccccCCCCCCCchH
Q 000463 1340 DLRSRFGIIPQEP--VLFEGTVRSNIDPIG---QYSD----EEIWKSLERCQLK-DVVAAKPDKLDSLVADSGDNWSVGQ 1409 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sd----~eI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQ 1409 (1479)
.+|++|+++||+| .+|..|+++|+.... ..+. +++.++++.+++. +.. .....+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~LSgGq 150 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVM-----------SQSPFQMSGGQ 150 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh-----------hCCcccCCHHH
Confidence 7899999999998 588899999996321 2233 3445666666664 222 23345799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1410 RQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1410 rQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||++|||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+.. ||||++|++|+
T Consensus 151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~ 223 (286)
T PRK13646 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGS 223 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999864 47999999999999865 99999999985
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=351.16 Aligned_cols=202 Identities=25% Similarity=0.374 Sum_probs=176.9
Q ss_pred cEEEEeeeeeecCCC--CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhh---h
Q 000463 1267 NVDLIDLQVRYRSNT--PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD---L 1341 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---L 1341 (1479)
.|+++|++++|+.+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 589999999997532 25999999999999999999999999999999999999999999999999998877654 2
Q ss_pred -hcceEEEcCccccccc-cHhhhcCC---CCCC----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHH
Q 000463 1342 -RSRFGIIPQEPVLFEG-TVRSNIDP---IGQY----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQL 1412 (1479)
Q Consensus 1342 -R~~i~iIpQdp~LF~g-TIR~NLdp---~~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1412 (1479)
+++++++||+|.+|.+ |+++|+.. +... ..+++.++++..++.+.....| ..||+|||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3679999999999875 99999963 1111 2456788899999987765554 3589999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1413 LCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1413 l~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
++|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|||+|+|+++.+..||+|++|++|+
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~ 223 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQ 223 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999988643 789999999999998899999999985
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=350.61 Aligned_cols=200 Identities=26% Similarity=0.457 Sum_probs=168.3
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhh-hcceE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL-RSRFG 1346 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~i~ 1346 (1479)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 578999999964 359999999999999999999999999999999999999999999999999988877664 67899
Q ss_pred EEcCccccccc-cHhhhcCCCCC-CC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhc
Q 000463 1347 IIPQEPVLFEG-TVRSNIDPIGQ-YS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVML 1420 (1479)
Q Consensus 1347 iIpQdp~LF~g-TIR~NLdp~~~-~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL 1420 (1479)
++||++.+|.+ |+++|+..... +. .+++.++++..+ .++..++ ....+||+|||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~------~l~~~~~----~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP------RLKERRK----QLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH------hhhhhhh----CchhhCCHHHHHHHHHHHHHh
Confidence 99999999987 99999964221 11 122334444431 1122223 334579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1421 KHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1421 r~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
++|++|+|||||++||.++.+.+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|+
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 209 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGR 209 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCe
Confidence 9999999999999999999999999999865 47899999999999877 99999999986
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=359.18 Aligned_cols=202 Identities=29% Similarity=0.485 Sum_probs=177.8
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.++++|++++|+.+.+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 58999999999744456999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcCcc--ccccccHhhhcCCC---CCCCHH----HHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHH
Q 000463 1347 IIPQEP--VLFEGTVRSNIDPI---GQYSDE----EIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGR 1417 (1479)
Q Consensus 1347 iIpQdp--~LF~gTIR~NLdp~---~~~sd~----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1417 (1479)
++||+| .++..|+++|+... ...+++ .+.+++++.++.++....+ .+||+|||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP-----------QNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 45677999999642 123333 3567788888877665544 478999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1418 VMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1418 ALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
||+++|++|+|||||++||+.+.+.+.+.|++..+ ++|+|+++|+++.+..||+|++|++|+
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~ 219 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGK 219 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCE
Confidence 99999999999999999999999999999998653 489999999999988899999999985
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=358.90 Aligned_cols=207 Identities=27% Similarity=0.408 Sum_probs=178.8
Q ss_pred CCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCEecCC--C
Q 000463 1264 AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP-----SGGRIIIDGIDISL--L 1336 (1479)
Q Consensus 1264 ~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~--i 1336 (1479)
+.+.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 16 ~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 4568999999999964 3599999999999999999999999999999999999975 89999999999875 3
Q ss_pred ChhhhhcceEEEcCccccccccHhhhcCCC---CCC--C----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCc
Q 000463 1337 GLHDLRSRFGIIPQEPVLFEGTVRSNIDPI---GQY--S----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSV 1407 (1479)
Q Consensus 1337 ~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~--s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSg 1407 (1479)
+...+|++++++||+|.+|.+|+++|+... ... + ++++.++++.+++.+.+.. .......+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-------RLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCH
Confidence 456788999999999999999999999631 111 1 3557888999888664431 12234567999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1408 GQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1408 GQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|||+++|+++.+.. ||+|++|++|+
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~ 239 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGN 239 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999987667899999999999976 89999999985
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=353.90 Aligned_cols=201 Identities=33% Similarity=0.534 Sum_probs=175.4
Q ss_pred EEEEeeeeeecCCC--CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhh---hh
Q 000463 1268 VDLIDLQVRYRSNT--PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD---LR 1342 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~---LR 1342 (1479)
|+++|++++|+... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+..+ .|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999997431 26999999999999999999999999999999999999999999999999998776543 47
Q ss_pred cceEEEcCcccccc-ccHhhhcCCC---CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHH
Q 000463 1343 SRFGIIPQEPVLFE-GTVRSNIDPI---GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLC 1414 (1479)
Q Consensus 1343 ~~i~iIpQdp~LF~-gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1414 (1479)
++++++||+|.+|. .|+++|+... ...+ ++++.++++..++.+.....+ .+||+|||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP-----------AQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh-----------hhCCHHHHHHHH
Confidence 88999999999997 5999999531 1122 456788889888876655443 468999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1415 LGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1415 LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||||++++|++|||||||++||+.+...+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~ 218 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGE 218 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999998653 7899999999999876 99999999995
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=348.28 Aligned_cols=211 Identities=32% Similarity=0.509 Sum_probs=185.9
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------eE
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------TT 710 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~i 710 (1479)
.++++|++++|++ .+++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 4789999999952 24699999999999999999999999999999999999999999999987 27
Q ss_pred EEEeccCcCCCCcHHHHHhcCCCC-ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCC
Q 000463 711 AYVAQTSWIQNGTIEENILFGLPM-NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCD 789 (1479)
Q Consensus 711 ayv~Q~~~i~~~Tv~enI~fg~~~-~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 789 (1479)
+|++|+++++..|++||+.++.+. ......+.++.+.+.+.++.++.|..+..+.+..+|||||||||+||||++++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999888999999987543 2334455566677888888888888888888999999999999999999999999
Q ss_pred EEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHh
Q 000463 790 IYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 790 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
++||||||++||+.+++.+++.+.+. .+++|+|++||+++.++.||++++|++|++++.|+++++.+
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKL-MKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999988765544 46899999999999988899999999999999998877654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=361.81 Aligned_cols=201 Identities=30% Similarity=0.489 Sum_probs=175.3
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecC--CCChhhhhcc
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDIS--LLGLHDLRSR 1344 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~--~i~l~~LR~~ 1344 (1479)
-|+++|++++|+.+ ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+. ..+..++|++
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 48999999999633 45999999999999999999999999999999999999999999999999984 3446678999
Q ss_pred eEEEcCcc--ccccccHhhhcCCC---CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHH
Q 000463 1345 FGIIPQEP--VLFEGTVRSNIDPI---GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCL 1415 (1479)
Q Consensus 1345 i~iIpQdp--~LF~gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1415 (1479)
++|+||+| .+|+.|+++|+... ...+ ++.+.++++.+++.++... ...+||+|||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDK-----------PTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhC-----------CcccCCHHHHHHHHH
Confidence 99999998 57889999999631 1223 2456777888888765432 245799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1416 GRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1416 ARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||||+.+|+||||||||++||+++.+.+.+.|++..+ ++|||++||+++.+.. ||||++|++|+
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~ 219 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGR 219 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999998754 7899999999999975 99999999995
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=346.43 Aligned_cols=195 Identities=27% Similarity=0.427 Sum_probs=172.1
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
|+++|++++|+.. . .|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+++++
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 5789999999642 2 39999999999999999999999999999999999999999999999986653 4678999
Q ss_pred EcCccccccc-cHhhhcCCCC----C---CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHh
Q 000463 1348 IPQEPVLFEG-TVRSNIDPIG----Q---YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1348 IpQdp~LF~g-TIR~NLdp~~----~---~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1419 (1479)
+||+|.+|.+ |+++|+.... . .+++++.++++.+++.+.....|. +||+|||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPG-----------ELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcc-----------cCCHHHHHHHHHHHHH
Confidence 9999999976 9999996321 1 235578899999999877666553 6899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+++|++|||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.. ||||++|++|+
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 206 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGR 206 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCE
Confidence 99999999999999999999999999999875 37899999999999977 99999999995
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=355.39 Aligned_cols=203 Identities=30% Similarity=0.450 Sum_probs=175.9
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCC-----ccEEEEcCEecCCC--Chhh
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS-----GGRIIIDGIDISLL--GLHD 1340 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~-----~G~I~IDG~dI~~i--~l~~ 1340 (1479)
++++|++++|+. ..+++|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +...
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 789999999974 34999999999999999999999999999999999999998 99999999999763 4556
Q ss_pred hhcceEEEcCccccccccHhhhcCCC---CC-CC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHH
Q 000463 1341 LRSRFGIIPQEPVLFEGTVRSNIDPI---GQ-YS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQL 1412 (1479)
Q Consensus 1341 LR~~i~iIpQdp~LF~gTIR~NLdp~---~~-~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1412 (1479)
.|++++++||++.+|..|+++|+... .. .+ ++++.++++..++.+.+.. .+ .....+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~----~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD---RL----HDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh---Hh----hCCcccCCHHHHHH
Confidence 78899999999999999999999631 11 12 3567888999998744321 11 22345799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1413 LCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1413 l~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|+|+++.+.. ||||++|++|+
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~ 220 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGE 220 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999987767899999999999876 99999999995
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=369.93 Aligned_cols=199 Identities=26% Similarity=0.426 Sum_probs=176.9
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.++++|++++|+.+ ..+|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.++.+++.+ +++|+
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 48999999999533 4599999999999999999999999999999999999999999999999999887765 47899
Q ss_pred EEcCccccccc-cHhhhcCCC-C--CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHH
Q 000463 1347 IIPQEPVLFEG-TVRSNIDPI-G--QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRV 1418 (1479)
Q Consensus 1347 iIpQdp~LF~g-TIR~NLdp~-~--~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1418 (1479)
+|||++.+|.. |+++|+... . ..+ ++++.++++.+++.++..+.|. +||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----------~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPR-----------ELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChh-----------hCCHHHHHHHHHHHH
Confidence 99999999964 999999632 1 223 3567889999999888777663 589999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1419 MLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1419 LLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|+++|+||+||||||+||..+...+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~ 212 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGV 212 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999998654 6899999999998876 99999999996
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=317.80 Aligned_cols=198 Identities=29% Similarity=0.418 Sum_probs=165.0
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-----------EEEE
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-----------TAYV 713 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-----------iayv 713 (1479)
+.++++.|+|+... =..+++|++||++||+||+||||||||+.|+|+..|.+|+|.++|. ++++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 56788999996421 2578999999999999999999999999999999999999999983 7899
Q ss_pred eccCcCCC-CcHHHHHhcCCC----CCh---hhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHh
Q 000463 714 AQTSWIQN-GTIEENILFGLP----MNR---AKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVY 785 (1479)
Q Consensus 714 ~Q~~~i~~-~Tv~enI~fg~~----~~~---~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 785 (1479)
+|+..+|. .||++||-+|.. .+. ++.+.+....++...++ +.+.+|||||||||+|||++.
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~-----------RLP~~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLK-----------RLPGELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhh-----------hCccccCchHHHHHHHHHHHh
Confidence 99998884 699999999964 222 23333333344444333 345689999999999999999
Q ss_pred cCCCEEEEeCccCCCChhhHHHHHHHHHhhh-cCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000463 786 QDCDIYLLDDVFSAVDAHTGSDIFKECVRGA-LKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 786 ~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
++.+|+|||||||+|||.-+.++...+.+.. .++.|+++|||+++.+.. +|+++++++|+|.++|+.+++...
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 9999999999999999999998876555544 358999999999999875 899999999999999999888754
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=362.56 Aligned_cols=201 Identities=25% Similarity=0.403 Sum_probs=173.3
Q ss_pred EEEEeeeeeecCCC---CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCC----CChhh
Q 000463 1268 VDLIDLQVRYRSNT---PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISL----LGLHD 1340 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~----i~l~~ 1340 (1479)
|+++|++++|+.+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997543 259999999999999999999999999999999999999999999999999863 34567
Q ss_pred hhcceEEEcCcc--ccccccHhhhcCCCC---CCC----HHHHHHHHHHcCch-HHHHhCcCCccccccCCCCCCCchHH
Q 000463 1341 LRSRFGIIPQEP--VLFEGTVRSNIDPIG---QYS----DEEIWKSLERCQLK-DVVAAKPDKLDSLVADSGDNWSVGQR 1410 (1479)
Q Consensus 1341 LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQr 1410 (1479)
+|+++++++|+| .+|..|+.+|+.... ..+ ++++.++++.+++. ++... ...+||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEK-----------SPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccC-----------CcccCCHHHH
Confidence 899999999998 789999999996321 123 23467778888884 33332 2347999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1411 QLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1411 Qrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|+
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~ 221 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGH 221 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999998764 47899999999998865 99999999995
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=354.85 Aligned_cols=200 Identities=28% Similarity=0.429 Sum_probs=174.7
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
++++|++++|+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999753 459999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EcCcccccc-ccHhhhcCCCC---CCC----HHHHHHHHHHcCchH--HHHhCcCCccccccCCCCCCCchHHHHHHHHH
Q 000463 1348 IPQEPVLFE-GTVRSNIDPIG---QYS----DEEIWKSLERCQLKD--VVAAKPDKLDSLVADSGDNWSVGQRQLLCLGR 1417 (1479)
Q Consensus 1348 IpQdp~LF~-gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~--~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1417 (1479)
+||+|.+|. .|+++|+.... ..+ ++++.++++..++.+ ... ....+||+|||||++|||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-----------~~~~~LS~G~~qrv~lar 148 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFAD-----------RYPHELSGGQQQRVGVAR 148 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHh-----------cChhhCCHHHHHHHHHHH
Confidence 999999986 69999996321 122 345677788887763 322 234579999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1418 VMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1418 ALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++++|++|+|||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|+
T Consensus 149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~ 213 (242)
T cd03295 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGE 213 (242)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999998753 7999999999998876 99999999995
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=357.24 Aligned_cols=204 Identities=30% Similarity=0.418 Sum_probs=175.7
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCEecC--CCChh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP-----SGGRIIIDGIDIS--LLGLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~--~i~l~ 1339 (1479)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999964 3599999999999999999999999999999999999987 4999999999997 45566
Q ss_pred hhhcceEEEcCccccccc-cHhhhcCCC---CC--CC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchH
Q 000463 1340 DLRSRFGIIPQEPVLFEG-TVRSNIDPI---GQ--YS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQ 1409 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~LF~g-TIR~NLdp~---~~--~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1409 (1479)
.+|++++++||+|.+|.+ |+++|+... .. .+ ++++.++++..++.+.+.. .......+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHHH
Confidence 788999999999999976 999999631 11 11 2457788888887654321 1223446799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1410 RQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1410 rQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||++|||||+++|++|||||||++||+++.+.+.+.|++..+++|+|+|+|+++.+.. ||||++|++|+
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 225 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGK 225 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999998777999999999999876 99999999985
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=348.16 Aligned_cols=198 Identities=27% Similarity=0.433 Sum_probs=173.6
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ..++|+++++
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 578999999964 3599999999999999999999999999999999999999999999999998763 3567889999
Q ss_pred EcCccccccc-cHhhhcCCC---CCC----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHh
Q 000463 1348 IPQEPVLFEG-TVRSNIDPI---GQY----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1348 IpQdp~LF~g-TIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1419 (1479)
+||++.+|.+ |+++|+... ... .++++.++++..++.+.....| .+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-----------KTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999998876 999999531 111 2456788899999877654443 36899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+.+|++|||||||++||+++.+.+.+.|++..+ ++|||+|+|+++.+.. ||||++|++|+
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999998653 6899999999999887 99999999995
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=355.37 Aligned_cols=204 Identities=32% Similarity=0.469 Sum_probs=177.3
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCEecCCCChhhh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP-----SGGRIIIDGIDISLLGLHDL 1341 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i~l~~L 1341 (1479)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4899999999964 3599999999999999999999999999999999999974 69999999999998888889
Q ss_pred hcceEEEcCccccc-cccHhhhcCCC---CCC--C----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHH
Q 000463 1342 RSRFGIIPQEPVLF-EGTVRSNIDPI---GQY--S----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1342 R~~i~iIpQdp~LF-~gTIR~NLdp~---~~~--s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
|++++++||+|.+| +.|+++|+... ... . ++++.++++.+++.+.+. ..+|.. ..+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~----~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK---DRLDAP----AGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---hhhcCC----cccCCHHHHH
Confidence 99999999999755 67999999631 111 1 356788999998865432 123333 3579999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++|||||+++|+||+|||||++||+.+.+.+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|+
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 222 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQ 222 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCe
Confidence 999999999999999999999999999999999999997778999999999999865 99999999995
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=353.08 Aligned_cols=195 Identities=26% Similarity=0.418 Sum_probs=172.8
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++
T Consensus 12 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~ 84 (257)
T PRK11247 12 PLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR 84 (257)
T ss_pred cEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence 5999999999964 35999999999999999999999999999999999999999999999998763 5688999
Q ss_pred EEcCcccccc-ccHhhhcCCC-CCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCC
Q 000463 1347 IIPQEPVLFE-GTVRSNIDPI-GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSR 1424 (1479)
Q Consensus 1347 iIpQdp~LF~-gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1424 (1479)
++||+|.+|. .|+++|+... ....++++.++++..++.+..... ..+||||||||++|||||+++|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEW-----------PAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999987 5999999742 222356788899999887654433 34799999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1425 LLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1425 ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+|||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~ 211 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGK 211 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999998864 37899999999999866 99999999985
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=350.74 Aligned_cols=215 Identities=25% Similarity=0.377 Sum_probs=190.1
Q ss_pred CccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------
Q 000463 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------- 708 (1479)
Q Consensus 642 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------- 708 (1479)
...|+++|++++|++. .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 17 ~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 17 GGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 3579999999999642 24699999999999999999999999999999999999999999999987
Q ss_pred eEEEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCC
Q 000463 709 TTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDC 788 (1479)
Q Consensus 709 ~iayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 788 (1479)
.++|++|+|++++.|++||+............+.++...+.+.++.++.|.++.+++++.+||||||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 37999999999999999999765433344455666777788888889888999999999999999999999999999999
Q ss_pred CEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhc
Q 000463 789 DIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 789 ~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
+++||||||++||+++.+.+++.+.+ ..+++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~-~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMT-AFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ 244 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHH-hcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence 99999999999999998888765543 4568999999999999888999999999999999999988754
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=332.96 Aligned_cols=171 Identities=42% Similarity=0.748 Sum_probs=162.1
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
++++|++++|+...+.+++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999997543469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EcCccccccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEE
Q 000463 1348 IPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLF 1427 (1479)
Q Consensus 1348 IpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILi 1427 (1479)
+||+|.+|++|+++|+ ||+|||||++||||++++|++|+
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 89999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1428 MDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1428 LDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|||||++||+++.+.+.+.|++..+++|+|+++|+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998877899999999999998899999999996
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=316.69 Aligned_cols=195 Identities=26% Similarity=0.437 Sum_probs=173.7
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
|.+++|.++|.. .+ =..+++|++||+|||+|+||||||||++++.||..|.+|.|.|+|+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~~-~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGH-LP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCc-ce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 567899999964 23 256899999999999999999999999999999999999999999999877665 466999
Q ss_pred EcCccccccc-cHhhhcCCC-------CCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHh
Q 000463 1348 IPQEPVLFEG-TVRSNIDPI-------GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1348 IpQdp~LF~g-TIR~NLdp~-------~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1419 (1479)
++||..||.- ||++|+... +....+.+..++.++|+.++..++|+. ||||||||++|||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~-----------LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGE-----------LSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccc-----------cCchHHHHHHHHHHH
Confidence 9999999976 999999732 123457799999999999999999964 699999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+|+.+||+||||.|+||+.-.+.+...+.+.. ++.|+++|||.++.+.. +||++++|+||
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gr 207 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGR 207 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCE
Confidence 99999999999999999999999888887754 57899999999999887 99999999996
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=358.58 Aligned_cols=200 Identities=25% Similarity=0.413 Sum_probs=177.7
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
++++|++++|+.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++++++
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 7899999999643 349999999999999999999999999999999999999999999999999988778888999999
Q ss_pred EcCcc--ccccccHhhhcCCCC---CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHH
Q 000463 1348 IPQEP--VLFEGTVRSNIDPIG---QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRV 1418 (1479)
Q Consensus 1348 IpQdp--~LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1418 (1479)
+||+| .+|..|+++|+.... ..+ ++.+.++++.+++.+.....| ..||+|||||++||||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lara 151 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAGV 151 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHHH
Confidence 99998 478889999996311 223 345788999999987766554 3689999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1419 MLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1419 LLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.+ ||||++|++|+
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~ 215 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGR 215 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCe
Confidence 9999999999999999999999999999998654 7899999999999965 99999999996
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=356.03 Aligned_cols=205 Identities=27% Similarity=0.405 Sum_probs=178.2
Q ss_pred ccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCEecCC--CCh
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE-----PSGGRIIIDGIDISL--LGL 1338 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~l 1338 (1479)
..|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 36999999999963 459999999999999999999999999999999999997 589999999999864 345
Q ss_pred hhhhcceEEEcCccccccccHhhhcCCC----CCC----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHH
Q 000463 1339 HDLRSRFGIIPQEPVLFEGTVRSNIDPI----GQY----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQR 1410 (1479)
Q Consensus 1339 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1410 (1479)
..+|++++++||+|.+|.+|+++|+... +.. .++++.++++.+++.+.+.. ........||+|||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~ 169 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-------DLHKSALTLSGGQQ 169 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-------hhcCCcccCCHHHH
Confidence 6788999999999999999999999632 111 23557788888888655432 23345568999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1411 QLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1411 Qrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||++||||++++|++|||||||++||+.+...+.+.|++..++.|+|+|+|+++.+.. ||||++|++|+
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 239 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGD 239 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 9999999999999999999999999999999999999998778999999999999876 99999999985
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=367.66 Aligned_cols=199 Identities=25% Similarity=0.401 Sum_probs=177.0
Q ss_pred ccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcce
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRF 1345 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1345 (1479)
..|+++|++++|.. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+.+ ++++
T Consensus 5 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred cEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 36999999999963 4589999999999999999999999999999999999999999999999999877654 5789
Q ss_pred EEEcCccccccc-cHhhhcCCC-C--CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHH
Q 000463 1346 GIIPQEPVLFEG-TVRSNIDPI-G--QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGR 1417 (1479)
Q Consensus 1346 ~iIpQdp~LF~g-TIR~NLdp~-~--~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1417 (1479)
++|+|++.+|.. |+++|+... . ..+ ++++.++++..++.++..+.| ..||||||||++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999976 999999731 1 122 457788999999987765554 368999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1418 VMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1418 ALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||+++|+||+||||||+||..+...+++.|++..+ +.|+|+|||+.+.+.. ||||+||++|+
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~ 214 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGK 214 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999998754 7899999999999876 99999999995
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=357.76 Aligned_cols=203 Identities=27% Similarity=0.447 Sum_probs=180.6
Q ss_pred ccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCc---cEEEEcCEecCCCChhhhh
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSG---GRIIIDGIDISLLGLHDLR 1342 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~---G~I~IDG~dI~~i~l~~LR 1342 (1479)
+.|+++|++++|+....++|+|+||+|++||.+||+|+||||||||+++|.|+++|++ |+|.+||.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4699999999997544459999999999999999999999999999999999999998 8999999999887777889
Q ss_pred cceEEEcCcc--ccccccHhhhcCCC---CCCCH----HHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHH
Q 000463 1343 SRFGIIPQEP--VLFEGTVRSNIDPI---GQYSD----EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLL 1413 (1479)
Q Consensus 1343 ~~i~iIpQdp--~LF~gTIR~NLdp~---~~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1413 (1479)
++++++||+| .+++.|+++||... ...++ +++.++++.+++.++....| .+||+|||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 9999999998 46788999999632 12333 45788899999987766655 36899999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1414 CLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1414 ~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
+|||||+++|++|||||||++||..+...+.+.|++..+ ++|||++||+++.+..||||++|++|+
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~ 220 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGK 220 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999998753 789999999999998899999999995
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=366.91 Aligned_cols=206 Identities=26% Similarity=0.411 Sum_probs=171.9
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-----------EEE
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-----------TAY 712 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-----------iay 712 (1479)
.++++|++++|+. ++++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|. +||
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4889999999942 357999999999999999999999999999999999999999999999983 899
Q ss_pred EeccCcCC-CCcHHHHHhcCCCCC---hhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCC
Q 000463 713 VAQTSWIQ-NGTIEENILFGLPMN---RAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDC 788 (1479)
Q Consensus 713 v~Q~~~i~-~~Tv~enI~fg~~~~---~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 788 (1479)
|+|++.++ +.||+|||.|+.... ....++ ...+-++.+.. ......++.+|||||||||+|||||+.+|
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~~gL--~~~~~~~~~~LSgGq~QRvalARAL~~~P 153 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEE-----RVAEAARILEL--EPLLDRKPRELSGGQRQRVAMGRAIVREP 153 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHcCC--hhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999887 579999999985421 111111 11222333322 22345677899999999999999999999
Q ss_pred CEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHHhc
Q 000463 789 DIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 789 ~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
+++|||||||+||+.+++.+.+.+.+...+ |.|+|+||||++++. .||+|++|++|++++.|+++++.++
T Consensus 154 ~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 154 AVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 999999999999999999998877655544 899999999999875 5999999999999999999998764
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=356.59 Aligned_cols=200 Identities=25% Similarity=0.396 Sum_probs=177.9
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..++|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999963 35999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcCccccccc-cHhhhcCCCC-----------CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHH
Q 000463 1347 IIPQEPVLFEG-TVRSNIDPIG-----------QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLC 1414 (1479)
Q Consensus 1347 iIpQdp~LF~g-TIR~NLdp~~-----------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1414 (1479)
++||++.++.+ |+++|+.... ...++++.++++.+++.+.....| .+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHHH
Confidence 99999877665 9999996310 112456888999999977655544 258999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1415 LGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1415 LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||||+.+|+||||||||++||..+.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|+
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~ 225 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGE 225 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 9999999999999999999999999999999999864 27999999999999976 99999999986
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=351.24 Aligned_cols=198 Identities=26% Similarity=0.421 Sum_probs=170.4
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.+. ++++++
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEE
Confidence 689999999963 45999999999999999999999999999999999999999999999999998776543 468999
Q ss_pred EcCcccc-ccccHhhhcCCCC---CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHh
Q 000463 1348 IPQEPVL-FEGTVRSNIDPIG---QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1348 IpQdp~L-F~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1419 (1479)
+||++.+ +..|+++|+.... ..+ ++++.++++..++.+.. .....+||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERA-----------DDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHHHHH
Confidence 9999987 5679999996421 122 23456667766665432 233457999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
+++|+||||||||++||+.+.+.+.+.|++.. +++|+|+++|+++.+..||+|++|++|+
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~ 209 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGR 209 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCe
Confidence 99999999999999999999999999999875 3789999999999998899999999985
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=355.28 Aligned_cols=204 Identities=25% Similarity=0.407 Sum_probs=174.6
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCEecCC--CChh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE-----PSGGRIIIDGIDISL--LGLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~l~ 1339 (1479)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999964 359999999999999999999999999999999999997 479999999999864 3455
Q ss_pred hhhcceEEEcCccccccccHhhhcCCCC---CC-----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHH
Q 000463 1340 DLRSRFGIIPQEPVLFEGTVRSNIDPIG---QY-----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~-----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
.+|+.++++||+|.+|++|+++|+.... .. .++++.++++.++++... +..++ ....+||+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~----~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---KDNLD----RNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---HHHhc----cChhhCCHHHHH
Confidence 6788999999999999999999996321 11 234567788888875321 11222 344679999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|+
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~ 223 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGD 223 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCE
Confidence 999999999999999999999999999999999999988777899999999999877 99999999985
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=347.32 Aligned_cols=201 Identities=30% Similarity=0.456 Sum_probs=168.8
Q ss_pred EEEEeeeeeecCCC--CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCCh---hhhh
Q 000463 1268 VDLIDLQVRYRSNT--PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGL---HDLR 1342 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l---~~LR 1342 (1479)
|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996431 259999999999999999999999999999999999999999999999999988763 5778
Q ss_pred cceEEEcCcc--ccc-cccHhhhcCC----CC-CCCHHHH----HHHHHHcCch-HHHHhCcCCccccccCCCCCCCchH
Q 000463 1343 SRFGIIPQEP--VLF-EGTVRSNIDP----IG-QYSDEEI----WKSLERCQLK-DVVAAKPDKLDSLVADSGDNWSVGQ 1409 (1479)
Q Consensus 1343 ~~i~iIpQdp--~LF-~gTIR~NLdp----~~-~~sd~eI----~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQ 1409 (1479)
++++++||+| .++ ..|+++|+.. .. ...+++. .++++..++. +.. .....+|||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LS~G~ 150 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVL-----------NRYPHELSGGQ 150 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHh-----------hCCchhcCHHH
Confidence 8999999999 344 4699999852 11 1112211 2556666653 222 23345799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1410 RQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1410 rQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||++|||||+++|+||+|||||++||+++.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|+
T Consensus 151 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 223 (228)
T cd03257 151 RQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGK 223 (228)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCE
Confidence 9999999999999999999999999999999999999998754 7899999999999985 99999999995
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=351.58 Aligned_cols=199 Identities=25% Similarity=0.420 Sum_probs=174.1
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhh-hcceE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL-RSRFG 1346 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~i~ 1346 (1479)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |++++
T Consensus 3 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 789999999964 359999999999999999999999999999999999999999999999999988776654 55799
Q ss_pred EEcCccccccc-cHhhhcCCCCC------------C---CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHH
Q 000463 1347 IIPQEPVLFEG-TVRSNIDPIGQ------------Y---SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQR 1410 (1479)
Q Consensus 1347 iIpQdp~LF~g-TIR~NLdp~~~------------~---sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1410 (1479)
++||++.+|.+ |+++|+..... . .++++.++++..++.+... ....+||||||
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Ge~ 149 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEAD-----------RLAGLLSHGQK 149 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHH
Confidence 99999999987 99999964211 0 2345677777777754432 23347999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1411 QLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1411 Qrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||++||||++++|++|+|||||++||+++.+.+.+.|++..+++|+|++||+++.+.+ ||+|++|++|+
T Consensus 150 qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 219 (242)
T TIGR03411 150 QWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGS 219 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 9999999999999999999999999999999999999987777899999999999976 99999999985
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=356.44 Aligned_cols=200 Identities=29% Similarity=0.460 Sum_probs=175.2
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCC-hhhhhcceE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG-LHDLRSRFG 1346 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~-l~~LR~~i~ 1346 (1479)
++++|++++|+.+ +.+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 6899999999643 35999999999999999999999999999999999999999999999999998765 467888999
Q ss_pred EEcCccc--cccccHhhhcCCCC---CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHH
Q 000463 1347 IIPQEPV--LFEGTVRSNIDPIG---QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGR 1417 (1479)
Q Consensus 1347 iIpQdp~--LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1417 (1479)
++||+|. ++..|+++|+.... ..+ ++++.++++..++.+.....+ ..||+|||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSP-----------KTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 9999985 56789999996421 122 345777888888876655433 468999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1418 VMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1418 ALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
||+++|+||||||||++||+.+...+.+.|++.. +++|||++||+++.+..||||++|++|+
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~ 212 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGK 212 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCE
Confidence 9999999999999999999999999999998764 4789999999999998899999999985
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=353.98 Aligned_cols=199 Identities=27% Similarity=0.493 Sum_probs=176.8
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..++++.+++
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999964 359999999999999999999999999999999999999999999999999988888888899999
Q ss_pred EcCccccccc-cHhhhcCCC--------CC---CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHH
Q 000463 1348 IPQEPVLFEG-TVRSNIDPI--------GQ---YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCL 1415 (1479)
Q Consensus 1348 IpQdp~LF~g-TIR~NLdp~--------~~---~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1415 (1479)
+||++.+|.+ |+++|++.. +. ..++++.++++.+++.+..... ...||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----------LTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----------cccCCHHHHHHHHH
Confidence 9999998877 999999742 11 1234678888888887655433 34689999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1416 GRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1416 ARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||++++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 215 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGH 215 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCe
Confidence 999999999999999999999999999999998864 47899999999999876 99999999985
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=370.14 Aligned_cols=200 Identities=26% Similarity=0.468 Sum_probs=179.4
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.++++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+++..++|++++
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4899999999964 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCcccc-ccccHhhhcCCCC-----------CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHH
Q 000463 1347 IIPQEPVL-FEGTVRSNIDPIG-----------QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLC 1414 (1479)
Q Consensus 1347 iIpQdp~L-F~gTIR~NLdp~~-----------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1414 (1479)
++||++.+ |+.|+++|+.... ..+++.+.++++.+++.++..+. ..+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----------~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----------VTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHH
Confidence 99999987 6779999995321 12245689999999998765433 2468999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1415 LGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1415 LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||||+++|+||+|||||++||+.+...+++.|++.. ++.|||+++|+++.+.. ||||++|++|+
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~ 216 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGR 216 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999875 47899999999999965 99999999995
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=362.76 Aligned_cols=200 Identities=28% Similarity=0.461 Sum_probs=174.0
Q ss_pred ccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcce
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRF 1345 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1345 (1479)
..|+++|++++|+. ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+...+ ...|++|
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 46999999999964 45999999999999999999999999999999999999999999999999997754 4578999
Q ss_pred EEEcCcccccc-ccHhhhcCCCC---CCCH----HHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHH
Q 000463 1346 GIIPQEPVLFE-GTVRSNIDPIG---QYSD----EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGR 1417 (1479)
Q Consensus 1346 ~iIpQdp~LF~-gTIR~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1417 (1479)
|++||+|.+|. .|+++|+..+. ..++ +++.++++.+++.+. .+++++ +||+|||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~----~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENK-------ADAKVG----ELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchH-------hcCchh----hCCHHHHHHHHHHH
Confidence 99999999886 59999996322 1232 345677777777543 344443 69999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1418 VMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1418 ALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||+++|++|+|||||++||+.+.+.+++.|++.. +++|||++||+++.+.. ||||++|++|+
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGR 215 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999875 47899999999999987 99999999995
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=363.03 Aligned_cols=207 Identities=25% Similarity=0.407 Sum_probs=171.0
Q ss_pred EEEEeeEEEecCCC-CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC---------------
Q 000463 645 VEVRDGVFSWDDEN-GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------------- 708 (1479)
Q Consensus 645 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------- 708 (1479)
|+++|++++|+..+ ..++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 34799999999999999999999999999999999999999999999987
Q ss_pred -eEEEEeccCcCC-CCcHHHHHhcCCCC---ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHH
Q 000463 709 -TTAYVAQTSWIQ-NGTIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARA 783 (1479)
Q Consensus 709 -~iayv~Q~~~i~-~~Tv~enI~fg~~~---~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 783 (1479)
.++|++|++.++ +.|++|||.++... +.+..++ + ..+-++.+...+ .....+.+|||||||||+||||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~--~---v~e~l~~vgL~~--~~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR--K---VTELLALVGLGD--KHDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHH--H---HHHHHHHcCCch--hhhCChhhCCHHHHHHHHHHHH
Confidence 279999998887 57999999986432 1111111 1 112233332222 3456788999999999999999
Q ss_pred HhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000463 784 VYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 784 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
|+.+|+++|||||||+||+.+.+.+++.+.+...+ |.|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~ 231 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH 231 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcC
Confidence 99999999999999999999999998766655544 8999999999999865 999999999999999999998753
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=353.82 Aligned_cols=204 Identities=27% Similarity=0.432 Sum_probs=175.3
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcc---CCC--CccEEEEcCEecCCC--Chh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL---VEP--SGGRIIIDGIDISLL--GLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl---~~p--~~G~I~IDG~dI~~i--~l~ 1339 (1479)
.++++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5899999999964 4599999999999999999999999999999999997 444 589999999998764 346
Q ss_pred hhhcceEEEcCccccccccHhhhcCCC---CC-----CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHH
Q 000463 1340 DLRSRFGIIPQEPVLFEGTVRSNIDPI---GQ-----YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~-----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
.+|++++|+||+|.+|.+|+++|+... .. ..+++++++++.+++.+.+.. .....+.+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD-------KLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhh-------hhhCCcccCCHHHHH
Confidence 778899999999999999999999631 11 123567888888888654432 122345689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|||+|+|+++.+.+ ||||++|++|+
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~ 222 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGE 222 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCE
Confidence 999999999999999999999999999999999999998778999999999999976 99999999985
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=350.04 Aligned_cols=199 Identities=29% Similarity=0.512 Sum_probs=170.7
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhh-hcceE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL-RSRFG 1346 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~i~ 1346 (1479)
++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 578999999963 359999999999999999999999999999999999999999999999999988776654 56899
Q ss_pred EEcCccccccc-cHhhhcCCC---CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHH
Q 000463 1347 IIPQEPVLFEG-TVRSNIDPI---GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRV 1418 (1479)
Q Consensus 1347 iIpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1418 (1479)
++||++.+|.+ |+++|+... .... ++++.++++..++.+... ....+||+|||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~a 147 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRK-----------SKASSLSGGERRRVEIARA 147 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHHHHH
Confidence 99999999987 999999632 1122 234556666666654332 2345799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1419 MLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1419 LLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
++++|++|||||||++||.++.+.+.+.|++.. +++|+|+++|+++.+.. ||+|++|++|+
T Consensus 148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 210 (232)
T cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGK 210 (232)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 999999999999999999999999999998865 47899999999998876 99999999995
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=359.89 Aligned_cols=203 Identities=27% Similarity=0.406 Sum_probs=173.2
Q ss_pred cEEEEeeeeeecCCC---CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCC----CChh
Q 000463 1267 NVDLIDLQVRYRSNT---PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISL----LGLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~----i~l~ 1339 (1479)
.++++|++++|+... .++|+||||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996432 359999999999999999999999999999999999999999999999999863 3466
Q ss_pred hhhcceEEEcCcc--ccccccHhhhcCCCC---CCCH----HHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHH
Q 000463 1340 DLRSRFGIIPQEP--VLFEGTVRSNIDPIG---QYSD----EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQR 1410 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1410 (1479)
..|++++++||+| .+|+.|+++|+.... ..+. +.+.++++.++|.+.+. +. ....||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~------~~----~~~~LSgGq~ 151 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL------AR----SPFELSGGQM 151 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh------hC----CcccCCHHHH
Confidence 7888999999998 688889999995211 1233 34667788888863221 11 2346999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1411 QLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1411 Qrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||++|||||+.+|+||||||||++||+.+...+.+.|++..+ +.|||+|||+++.+.. ||||++|++|+
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~ 223 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGT 223 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999998753 7899999999999876 99999999995
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=345.49 Aligned_cols=198 Identities=26% Similarity=0.394 Sum_probs=174.2
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.|+++|++++|.. .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999963 35999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcCccccccccHhhhcCCC----CC-CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhcc
Q 000463 1347 IIPQEPVLFEGTVRSNIDPI----GQ-YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLK 1421 (1479)
Q Consensus 1347 iIpQdp~LF~gTIR~NLdp~----~~-~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1421 (1479)
++||+|.+|+.|+++|+... .. ..++++.++++..++.+.. ......+||+|||||++|||||++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTI----------LTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHH----------hcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999631 11 2344567788888775321 122345799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhhcCEEEEEe
Q 000463 1422 HSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMDCDRVIVVD 1476 (1479)
Q Consensus 1422 ~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~~DrIlVL~ 1476 (1479)
+|+++||||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+..||+|++|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~ 211 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQ 211 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEe
Confidence 9999999999999999999999999998653 789999999999998899999996
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=333.52 Aligned_cols=172 Identities=35% Similarity=0.561 Sum_probs=159.6
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCC--hhhhhcce
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG--LHDLRSRF 1345 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~--l~~LR~~i 1345 (1479)
|+++|++++|+. .++++|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ....|+++
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 578999999964 45999999999999999999999999999999999999999999999999998876 56788999
Q ss_pred EEEcCccccccc-cHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCC
Q 000463 1346 GIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSR 1424 (1479)
Q Consensus 1346 ~iIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1424 (1479)
+++||+|.+|.+ |+++|+... ||+|||||++|||||+++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999998865 999999642 89999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1425 LLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1425 ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+++|||||++||+.+...+.+.|++..+ ++|+|+++|+++.+.+ ||+|++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999998754 5899999999999986 99999999996
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=360.46 Aligned_cols=202 Identities=26% Similarity=0.343 Sum_probs=172.7
Q ss_pred cEEEEeeeeeecCCC---CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCC--------
Q 000463 1267 NVDLIDLQVRYRSNT---PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISL-------- 1335 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~-------- 1335 (1479)
.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 388999999997542 259999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CChhhhhcceEEEcCcc--ccccccHhhhcCCCC---CCC----HHHHHHHHHHcCch-HHHHh
Q 000463 1336 ----------------LGLHDLRSRFGIIPQEP--VLFEGTVRSNIDPIG---QYS----DEEIWKSLERCQLK-DVVAA 1389 (1479)
Q Consensus 1336 ----------------i~l~~LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~-~~i~~ 1389 (1479)
.+...+|++|+++||+| .+|..|+++||.... ..+ ++++.++++.++|. ++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 13456889999999987 688889999996321 223 34577888888885 44433
Q ss_pred CcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh
Q 000463 1390 KPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD 1468 (1479)
Q Consensus 1390 lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~ 1468 (1479)
. ..+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .++|||+|+|+++.+..
T Consensus 162 ~-----------~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 162 S-----------PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred C-----------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 3 34689999999999999999999999999999999999999999998864 47899999999998865
Q ss_pred -cCEEEEEeCCC
Q 000463 1469 -CDRVIVVDAGL 1479 (1479)
Q Consensus 1469 -~DrIlVL~~G~ 1479 (1479)
||||++|++|+
T Consensus 231 ~adrv~vl~~G~ 242 (305)
T PRK13651 231 WTKRTIFFKDGK 242 (305)
T ss_pred hCCEEEEEECCE
Confidence 99999999995
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=356.29 Aligned_cols=202 Identities=26% Similarity=0.435 Sum_probs=178.6
Q ss_pred cEEEEeeeeeecCC-CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcce
Q 000463 1267 NVDLIDLQVRYRSN-TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRF 1345 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1345 (1479)
-++++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743 24599999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcCcc--ccccccHhhhcCCC---CCCCH----HHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHH
Q 000463 1346 GIIPQEP--VLFEGTVRSNIDPI---GQYSD----EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLG 1416 (1479)
Q Consensus 1346 ~iIpQdp--~LF~gTIR~NLdp~---~~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1416 (1479)
+++||+| .++..|+.+||... ...++ +++.++++.+++.++....| ..||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP-----------ARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 47788999999632 12333 34577888888877655433 46899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1417 RVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1417 RALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|||+++|+||||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|+
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~ 217 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGE 217 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999998754 789999999999998899999999995
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=351.75 Aligned_cols=205 Identities=29% Similarity=0.435 Sum_probs=176.2
Q ss_pred ccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCEecCC--CCh
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP-----SGGRIIIDGIDISL--LGL 1338 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~--i~l 1338 (1479)
|.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 57999999999974 3599999999999999999999999999999999999863 69999999999875 355
Q ss_pred hhhhcceEEEcCccccccccHhhhcCCCC---C-C----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHH
Q 000463 1339 HDLRSRFGIIPQEPVLFEGTVRSNIDPIG---Q-Y----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQR 1410 (1479)
Q Consensus 1339 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~-~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1410 (1479)
..+|++++++||+|.+|..|+++|+.... . . .++++.++++.+++.+.+.. .......+||+|||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-------RLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-------HHhcCCCCCCHHHH
Confidence 67899999999999999999999996321 1 1 23556777888877644321 22334567999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1411 QLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1411 Qrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||++|||||+++|++|+|||||++||+.+...+.+.|++..+++|||+|||+++.+.+ ||||++|++|+
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~ 222 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGE 222 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999987668899999999999876 99999999985
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=345.31 Aligned_cols=195 Identities=26% Similarity=0.479 Sum_probs=169.3
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
++++|++++|+. .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 578999999963 459999999999999999999999999999999999999999999999998753 56789999
Q ss_pred EcCccccccc-cHhhhcCCCC---CC----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHh
Q 000463 1348 IPQEPVLFEG-TVRSNIDPIG---QY----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1348 IpQdp~LF~g-TIR~NLdp~~---~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1419 (1479)
+||++.+|.+ |+++|+.... .. .++++.++++..++.+..... ..+||+|||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKR-----------VEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCc-----------HhhCCHHHHHHHHHHHHH
Confidence 9999999876 9999985321 11 134567778888776554332 346899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+++|++|||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++|+
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 205 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGR 205 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCE
Confidence 99999999999999999999999999998864 47899999999999876 99999999985
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=351.72 Aligned_cols=204 Identities=26% Similarity=0.390 Sum_probs=176.0
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCC-----ccEEEEcCEecCCC--Chh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS-----GGRIIIDGIDISLL--GLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~-----~G~I~IDG~dI~~i--~l~ 1339 (1479)
.++++|++++|.. +++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5899999999963 45999999999999999999999999999999999999997 69999999998653 456
Q ss_pred hhhcceEEEcCccccccccHhhhcCCCC---C-CC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHH
Q 000463 1340 DLRSRFGIIPQEPVLFEGTVRSNIDPIG---Q-YS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~-~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
.+|++++++||+|.+|..|+++|+.... . .. ++.+.++++..++.+.+.. .......+||+||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKD-------NLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhh-------HhhCCcccCCHHHHH
Confidence 7889999999999999999999996321 1 11 2445667777777654432 234456789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++|||||+++|++|||||||++||..+...+.+.|++..+++|||+|||+++.+.+ ||+|++|++|+
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~ 223 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGD 223 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCe
Confidence 999999999999999999999999999999999999987667999999999999987 89999999985
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=355.10 Aligned_cols=204 Identities=29% Similarity=0.430 Sum_probs=175.0
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCEecCCCC--hh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE-----PSGGRIIIDGIDISLLG--LH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~i~--l~ 1339 (1479)
.-+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.+||.++...+ ..
T Consensus 5 ~~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 5 HASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 3478999999963 459999999999999999999999999999999999986 47999999999987653 34
Q ss_pred hhhcceEEEcCccccccccHhhhcCCC---CC------CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHH
Q 000463 1340 DLRSRFGIIPQEPVLFEGTVRSNIDPI---GQ------YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQR 1410 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~------~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1410 (1479)
.+|++++|+||+|.+|.+|+++|+... .. ..++++.++++..++.+.+. +.+...+.+||+|||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 678899999999999999999999631 11 12356778889888865432 122334567999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1411 QLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1411 Qrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||++||||++++|+||||||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|+
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~ 225 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGR 225 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCE
Confidence 9999999999999999999999999999999999999988778999999999999976 99999999985
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=342.47 Aligned_cols=206 Identities=30% Similarity=0.396 Sum_probs=183.0
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------eE
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------TT 710 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~i 710 (1479)
.++++|+++.|+.. ++++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 47899999999642 34799999999999999999999999999999999999999999999987 37
Q ss_pred EEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCE
Q 000463 711 AYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDI 790 (1479)
Q Consensus 711 ayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 790 (1479)
+|++|++.+++.|++||+.+......++..+.++..++.+.+..++.|.++..++++.+||||||||++||||++.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999998999999987655554555556677778888888899999999999999999999999999999999999
Q ss_pred EEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecC
Q 000463 791 YLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGR 851 (1479)
Q Consensus 791 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~ 851 (1479)
+||||||++||+.+++.+.+.+.+ ..+++|+|++||+++.++.||++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIRE-AFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHH-hcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999988865544 345789999999999998899999999999988765
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=352.26 Aligned_cols=204 Identities=27% Similarity=0.393 Sum_probs=174.3
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC--C---CccEEEEcCEecCCC--Chh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE--P---SGGRIIIDGIDISLL--GLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~--p---~~G~I~IDG~dI~~i--~l~ 1339 (1479)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+.+ | ++|+|.+||.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999964 359999999999999999999999999999999999953 6 499999999998653 345
Q ss_pred hhhcceEEEcCccccccccHhhhcCCC----CCC----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHH
Q 000463 1340 DLRSRFGIIPQEPVLFEGTVRSNIDPI----GQY----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
.+|++++++||+|.+|+.|+++|+... +.. .++++.++++.+++.+.+.. .......+||+||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD-------RLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHH-------HHhcCcccCCHHHHH
Confidence 678899999999999999999999621 111 23456778888887654321 223345679999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++|||||+++|+||||||||++||.++...+.+.|++..+++|||+|+|+++.+.. ||||++|++|+
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 224 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGD 224 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999987677999999999999876 99999999985
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=353.19 Aligned_cols=203 Identities=29% Similarity=0.449 Sum_probs=175.6
Q ss_pred CccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCC-------
Q 000463 1265 HGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG------- 1337 (1479)
Q Consensus 1265 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~------- 1337 (1479)
++.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..+.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 467999999999974 35999999999999999999999999999999999999999999999999986431
Q ss_pred ------hhhhhcceEEEcCccccccc-cHhhhcCCC----CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCC
Q 000463 1338 ------LHDLRSRFGIIPQEPVLFEG-TVRSNIDPI----GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSG 1402 (1479)
Q Consensus 1338 ------l~~LR~~i~iIpQdp~LF~g-TIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1402 (1479)
...+|++++++||+|.+|.+ |+++|+... .... ++++.+++++.++.+.... ...
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQG----------KYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhh----------CCc
Confidence 34678899999999999975 999999631 1122 3467788888888665421 223
Q ss_pred CCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1403 DNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1403 ~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
..||+|||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|+|+++.+.+ ||||++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 5799999999999999999999999999999999999999999999864 47999999999999987 99999999985
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=354.87 Aligned_cols=204 Identities=27% Similarity=0.452 Sum_probs=174.5
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCEecCC--CChh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE-----PSGGRIIIDGIDISL--LGLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~l~ 1339 (1479)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5999999999963 459999999999999999999999999999999999865 789999999999865 3445
Q ss_pred hhhcceEEEcCccccccccHhhhcCCC----CC----CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHH
Q 000463 1340 DLRSRFGIIPQEPVLFEGTVRSNIDPI----GQ----YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
.+|++++|+||+|.+|.+|+++|+... .. ..++.+.++++..++.+.+. ........+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHHH
Confidence 678899999999999999999999631 11 11345777888887753221 1123345689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|+
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~ 240 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGD 240 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999998667899999999998876 99999999985
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=346.33 Aligned_cols=201 Identities=27% Similarity=0.398 Sum_probs=176.0
Q ss_pred EEEEeeeeeecCCC--CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChh---hhh
Q 000463 1268 VDLIDLQVRYRSNT--PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLH---DLR 1342 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~---~LR 1342 (1479)
++++|++++|+++. ..+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|++||.++..++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999997532 4699999999999999999999999999999999999999999999999999877643 468
Q ss_pred cceEEEcCcccccc-ccHhhhcCCCC----CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHH
Q 000463 1343 SRFGIIPQEPVLFE-GTVRSNIDPIG----QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLL 1413 (1479)
Q Consensus 1343 ~~i~iIpQdp~LF~-gTIR~NLdp~~----~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1413 (1479)
++++++||+|.+|. .|+.+|+.... ..+ ++++.++++++++.+.....| .+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 89999999999987 69999996321 222 235778888888877766655 36899999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1414 CLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1414 ~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
+||||++++|++|+|||||++||.++.+.+.+.|++..+ ++|+|+|+|+++....||+|++|++|+
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~ 218 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGK 218 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCE
Confidence 999999999999999999999999999999999988753 799999999999776699999999985
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=366.63 Aligned_cols=198 Identities=27% Similarity=0.421 Sum_probs=176.1
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.++++|++++|+. ..+|+|+||++++||++||+||||||||||+++|.|+.+|++|+|.+||.++.+.+.+ +++++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999964 4589999999999999999999999999999999999999999999999999877654 67899
Q ss_pred EEcCcccccc-ccHhhhcCCC-C--CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHH
Q 000463 1347 IIPQEPVLFE-GTVRSNIDPI-G--QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRV 1418 (1479)
Q Consensus 1347 iIpQdp~LF~-gTIR~NLdp~-~--~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1418 (1479)
++||++.+|. .|+++|+... . ..+ ++++.++++..+|.++....| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP-----------GQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 5999999631 1 122 456788899998887766555 3689999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1419 MLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1419 LLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|+++|++|+||||||+||..+...+++.|++..+ +.|+|+|||+++.+.. ||||++|++|+
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~ 212 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGV 212 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999998754 7899999999999876 99999999996
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=351.41 Aligned_cols=206 Identities=26% Similarity=0.425 Sum_probs=176.6
Q ss_pred CccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC--C---CccEEEEcCEecCCC--C
Q 000463 1265 HGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE--P---SGGRIIIDGIDISLL--G 1337 (1479)
Q Consensus 1265 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~--p---~~G~I~IDG~dI~~i--~ 1337 (1479)
.|.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++... .
T Consensus 2 ~~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 2 NNKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred CcEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 367999999999973 359999999999999999999999999999999999986 4 689999999999754 3
Q ss_pred hhhhhcceEEEcCcccccc-ccHhhhcCCC----CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCch
Q 000463 1338 LHDLRSRFGIIPQEPVLFE-GTVRSNIDPI----GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVG 1408 (1479)
Q Consensus 1338 l~~LR~~i~iIpQdp~LF~-gTIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG 1408 (1479)
...+|++++++||++.+|. .|+++|+... +..+ ++++.++++.+++.+.+... ......+||+|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR-------LKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH-------hhCCcCcCCHH
Confidence 4567899999999999998 5999999631 1112 34567788888886544321 12345689999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1409 QRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1409 QrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||||++||||++++|++|||||||++||..+.+.+.+.|++..++.|||++||+++.+.. ||||++|++|+
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~ 224 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGD 224 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999998778899999999999976 99999999985
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=352.01 Aligned_cols=204 Identities=24% Similarity=0.420 Sum_probs=176.0
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCEecCCC--Chh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP-----SGGRIIIDGIDISLL--GLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i--~l~ 1339 (1479)
-|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999963 4599999999999999999999999999999999999984 899999999998753 345
Q ss_pred hhhcceEEEcCccccccccHhhhcCCC----CCC----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHH
Q 000463 1340 DLRSRFGIIPQEPVLFEGTVRSNIDPI----GQY----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
.+|++++++||+|.+|..|+++|+... +.. .++++.++++..++.+.+.. .......+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHHH
Confidence 678899999999999999999999631 111 23456778888888654422 233445689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++||||++++|+||+|||||++||..+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|+
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~ 222 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGE 222 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999998778999999999998876 99999999985
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=330.82 Aligned_cols=169 Identities=34% Similarity=0.617 Sum_probs=157.2
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
++++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 478999999964 25999999999999999999999999999999999999999999999999998765 677889999
Q ss_pred EcCccccccc-cHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEE
Q 000463 1348 IPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLL 1426 (1479)
Q Consensus 1348 IpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1426 (1479)
+||+|.+|.+ |+++|+. ||+|||||++|||||+++|+||
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999887 9999973 8999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1427 FMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1427 iLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+|||||++||..+.+.+.+.|++.. ++.|+|+++|+.+.+.+ ||+|++|++|+
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGR 172 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999875 35899999999999985 99999999996
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=354.52 Aligned_cols=206 Identities=26% Similarity=0.382 Sum_probs=178.7
Q ss_pred CccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCEecCC--CC
Q 000463 1265 HGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP-----SGGRIIIDGIDISL--LG 1337 (1479)
Q Consensus 1265 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~--i~ 1337 (1479)
.+.++++|++++|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.|+.. .+
T Consensus 23 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 457999999999964 3599999999999999999999999999999999999884 89999999999875 34
Q ss_pred hhhhhcceEEEcCccccccccHhhhcCCC---CC-CC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchH
Q 000463 1338 LHDLRSRFGIIPQEPVLFEGTVRSNIDPI---GQ-YS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQ 1409 (1479)
Q Consensus 1338 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~-~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1409 (1479)
...+|++++++||++.+|.+|+++|+... .. .. ++++.++++.+++.+.+.. .....+.+||+||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHHH
Confidence 56788999999999999999999999632 11 11 3457888888888765432 2234456899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1410 RQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1410 rQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||||++|++|+
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~ 244 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGK 244 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999998778999999999999876 99999999985
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=357.55 Aligned_cols=198 Identities=28% Similarity=0.413 Sum_probs=172.3
Q ss_pred EEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhh----hcc
Q 000463 1269 DLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL----RSR 1344 (1479)
Q Consensus 1269 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L----R~~ 1344 (1479)
.++|++.+|.. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 45678888864 458999999999999999999999999999999999999999999999999988765543 468
Q ss_pred eEEEcCcccccc-ccHhhhcCCC---CCC----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHH
Q 000463 1345 FGIIPQEPVLFE-GTVRSNIDPI---GQY----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLG 1416 (1479)
Q Consensus 1345 i~iIpQdp~LF~-gTIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1416 (1479)
++++||+|.+|. .|+++|+... ... .++++.++++.+++.+.....|. +||+|||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD-----------ELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcc-----------cCCHHHHHHHHHH
Confidence 999999999885 5999999631 111 23567888999999877766553 6899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1417 RVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1417 RALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~ 238 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGR 238 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999998643 7899999999999876 99999999985
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=355.46 Aligned_cols=202 Identities=24% Similarity=0.415 Sum_probs=176.8
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.++++|++++|+...+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 58999999999754446999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcCccc--cccccHhhhcCCCC---CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHH
Q 000463 1347 IIPQEPV--LFEGTVRSNIDPIG---QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGR 1417 (1479)
Q Consensus 1347 iIpQdp~--LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1417 (1479)
++||+|. ++..|+++|+.... ... ++++.++++..++.+..... ..+||+|||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYE-----------PNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------cccCCHHHHHHHHHHH
Confidence 9999994 44568999985321 112 34677888888886654432 3479999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1418 VMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1418 ALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
|++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||||++|++|+
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~ 219 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGT 219 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCE
Confidence 99999999999999999999999999999998653 789999999999998899999999995
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=355.98 Aligned_cols=202 Identities=29% Similarity=0.451 Sum_probs=178.0
Q ss_pred cEEEEeeeeeecCC----CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCC-hhhh
Q 000463 1267 NVDLIDLQVRYRSN----TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG-LHDL 1341 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~----~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~-l~~L 1341 (1479)
-++++|++++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999743 246999999999999999999999999999999999999999999999999997654 4567
Q ss_pred hcceEEEcCccc--cccccHhhhcCCCC---CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHH
Q 000463 1342 RSRFGIIPQEPV--LFEGTVRSNIDPIG---QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQL 1412 (1479)
Q Consensus 1342 R~~i~iIpQdp~--LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1412 (1479)
|++++++||+|. +|..|+++|+.... ..+ ++++.++++.+++.++....| .+||+|||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 67679999996321 122 456888999999988776655 3689999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhhcCEEEEEeCCC
Q 000463 1413 LCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1413 l~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1479 (1479)
++|||||+++|++|||||||++||+.+...+.+.|++.. .++|||+|+|+++.+..||||++|++|+
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~ 221 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGK 221 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCE
Confidence 999999999999999999999999999999999999864 3789999999999998899999999985
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=367.25 Aligned_cols=187 Identities=29% Similarity=0.424 Sum_probs=168.0
Q ss_pred CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhh----hcceEEEcCccccccc
Q 000463 1282 PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL----RSRFGIIPQEPVLFEG 1357 (1479)
Q Consensus 1282 ~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L----R~~i~iIpQdp~LF~g 1357 (1479)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|+|||.|+...+..++ |++++||||++.+|..
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 458999999999999999999999999999999999999999999999999999998887 7899999999999975
Q ss_pred -cHhhhcCCC---CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEe
Q 000463 1358 -TVRSNIDPI---GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMD 1429 (1479)
Q Consensus 1358 -TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLD 1429 (1479)
||++|+... ...+ ++++.++++.++|.++....|. +||||||||++|||||+++|+||+||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~-----------~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD-----------ELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChh-----------hCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999631 1122 4567889999999877666553 68999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1430 EATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1430 EaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||||+||+.+.+.+++.+++.. .++|+|+|||+++.+.. ||||++|++|+
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~ 207 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGE 207 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 9999999999999999998764 37899999999998766 99999999995
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=364.61 Aligned_cols=198 Identities=28% Similarity=0.452 Sum_probs=175.1
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.|+++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+. .|++++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 4889999999964 359999999999999999999999999999999999999999999999999987653 467899
Q ss_pred EEcCccccccc-cHhhhcCCC-C------CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHH
Q 000463 1347 IIPQEPVLFEG-TVRSNIDPI-G------QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLC 1414 (1479)
Q Consensus 1347 iIpQdp~LF~g-TIR~NLdp~-~------~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1414 (1479)
++||++.+|.. |+++|+... . ..+ ++++.++++.+++.++....| ..||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 99999999975 999999632 1 122 356778899999877665554 368999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1415 LGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1415 LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||||+++|++|+|||||++||..+...+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|+
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~ 214 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGN 214 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999998764 6899999999999877 99999999996
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=353.70 Aligned_cols=204 Identities=25% Similarity=0.391 Sum_probs=175.0
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCEecCCC--Chh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP-----SGGRIIIDGIDISLL--GLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i--~l~ 1339 (1479)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 6999999999963 3599999999999999999999999999999999999985 799999999998653 345
Q ss_pred hhhcceEEEcCccccccccHhhhcCCC---CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHH
Q 000463 1340 DLRSRFGIIPQEPVLFEGTVRSNIDPI---GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQL 1412 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1412 (1479)
.+|++++|+||++.+|..|+++|+... ...+ ++++.++++.+++.+.+. ..++. ...+||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~----~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLKS----PALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhcC----ChhhCCHHHHHH
Confidence 678899999999999999999999631 1122 235677888888754321 12333 345799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1413 LCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1413 l~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
++|||||+++|+||+|||||++||.++...+.+.|++..+++|||+|||+++.+.+ ||||++|++|+
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~ 230 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGE 230 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999987668999999999999976 99999999995
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=352.14 Aligned_cols=199 Identities=27% Similarity=0.463 Sum_probs=173.6
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCC----------
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG---------- 1337 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~---------- 1337 (1479)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 578999999964 35999999999999999999999999999999999999999999999999997653
Q ss_pred ---hhhhhcceEEEcCcccccc-ccHhhhcCCC----CCC----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCC
Q 000463 1338 ---LHDLRSRFGIIPQEPVLFE-GTVRSNIDPI----GQY----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNW 1405 (1479)
Q Consensus 1338 ---l~~LR~~i~iIpQdp~LF~-gTIR~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1405 (1479)
...+|++++++||++.+|. .|+++|+... ... .++++.++++..++.+.....| ..|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP-----------AQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh-----------hhc
Confidence 2467889999999999885 7999999631 111 2356778888888876655443 468
Q ss_pred CchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1406 SVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1406 SgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||||||++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.+ |||+++|++|+
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~ 224 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGR 224 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 99999999999999999999999999999999999999999998653 7899999999999976 99999999995
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=342.16 Aligned_cols=195 Identities=24% Similarity=0.433 Sum_probs=172.4
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
++++|++++|+. +++|+||++++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+.+.+ ..|+++++
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999962 568999999999999999999999999999999999999999999999987643 46788999
Q ss_pred EcCccccccc-cHhhhcCC-CC-C-----CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHh
Q 000463 1348 IPQEPVLFEG-TVRSNIDP-IG-Q-----YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1348 IpQdp~LF~g-TIR~NLdp-~~-~-----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1419 (1479)
+||+|.+|.+ |+++|+.. .. . ..++++.++++..++.+.....|. +||+|||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-----------QLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc-----------cCCHHHHHHHHHHHHH
Confidence 9999999875 99999952 21 1 134578889999999877666653 5899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+++|+|++|||||++||.++.+.+.+.|++..+ ++|+|+|||+++.+.+ ||+|++|++|+
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~ 206 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGK 206 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCe
Confidence 999999999999999999999999999998653 7899999999999876 99999999986
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=349.31 Aligned_cols=200 Identities=29% Similarity=0.406 Sum_probs=172.2
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecC------CCChhh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDIS------LLGLHD 1340 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~------~i~l~~ 1340 (1479)
.++++|++++|+. +.+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ......
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 3789999999964 35999999999999999999999999999999999999999999999999874 123456
Q ss_pred hhcceEEEcCccccccc-cHhhhcCC--C--CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHH
Q 000463 1341 LRSRFGIIPQEPVLFEG-TVRSNIDP--I--GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1341 LR~~i~iIpQdp~LF~g-TIR~NLdp--~--~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
+|++++++||+|.+|.+ |+++|+.. . .... .+++.++++..++.++....| .+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP-----------LHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHH
Confidence 78899999999999976 99999952 1 1122 334667777777766555443 468999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++||||++++|+||||||||++||+++...+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|+
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 218 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGH 218 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 9999999999999999999999999999999999999865 37899999999999976 99999999985
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=330.52 Aligned_cols=210 Identities=27% Similarity=0.397 Sum_probs=169.0
Q ss_pred cEEEEeeEEEecCCC-CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-------------
Q 000463 644 AVEVRDGVFSWDDEN-GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------- 709 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------- 709 (1479)
.++++|+++.|+... ..++|+||||++.+||.++|+|++|||||||.++|+|..+|++|+|.++|+
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 689999999996432 125999999999999999999999999999999999999999999999983
Q ss_pred -EEEEeccCcC---CCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHh
Q 000463 710 -TAYVAQTSWI---QNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVY 785 (1479)
Q Consensus 710 -iayv~Q~~~i---~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 785 (1479)
+-+|+|+|.- +..||++-|.=+...+ .+.+.-+. ..+-++.+.. ......+++.+|||||||||||||||.
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~--~~~~~~~~--i~~~L~~VgL-~~~~l~R~P~eLSGGQ~QRiaIARAL~ 157 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPH--GLSKSQQR--IAELLDQVGL-PPSFLDRRPHELSGGQRQRIAIARALI 157 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccC--CccHHHHH--HHHHHHHcCC-CHHHHhcCchhcChhHHHHHHHHHHhc
Confidence 6799999853 5679998775443221 11111110 1122222221 123456788999999999999999999
Q ss_pred cCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000463 786 QDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 786 ~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
.+|+++|||||||+||+.+...|++.+.+... .+-|.|+||||+..+.+ ||||.||++|++++.++.+++...
T Consensus 158 ~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 158 PEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred cCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 99999999999999999999999987665543 47899999999999987 999999999999999999888764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=351.68 Aligned_cols=204 Identities=26% Similarity=0.394 Sum_probs=174.7
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC--C---CccEEEEcCEecCC--CChh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE--P---SGGRIIIDGIDISL--LGLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~--p---~~G~I~IDG~dI~~--i~l~ 1339 (1479)
-|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 5899999999974 359999999999999999999999999999999999987 3 59999999999864 3456
Q ss_pred hhhcceEEEcCccccccccHhhhcCCC----CCCCH----HHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHH
Q 000463 1340 DLRSRFGIIPQEPVLFEGTVRSNIDPI----GQYSD----EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
.+|++++++||+|.+|.+|+++|+... +..++ +++.++++..++.+.+.. .......+||+||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD-------RLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHH
Confidence 788999999999999999999999532 11222 345667778887654321 123345679999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++||||++++|+||+|||||++||+++...+.+.|++..+++|+|+|+|+++.+.+ ||||++|++|+
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~ 231 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGE 231 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999998778999999999999876 99999999985
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=351.02 Aligned_cols=204 Identities=25% Similarity=0.418 Sum_probs=177.3
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCEecCC--CChh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE-----PSGGRIIIDGIDISL--LGLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~l~ 1339 (1479)
.++++||+++|+. .++|+|+||+|++||.+||+|+||||||||+++|+|+.+ |++|+|.+||.+++. .+..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 3789999999974 359999999999999999999999999999999999975 489999999999875 3466
Q ss_pred hhhcceEEEcCccccccccHhhhcCCC-C--C-CC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHH
Q 000463 1340 DLRSRFGIIPQEPVLFEGTVRSNIDPI-G--Q-YS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~LF~gTIR~NLdp~-~--~-~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
.+|++++++||+|.+|.+|+++|+... . . .+ ++++.++++.+++.+.+... + ...+.+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~----~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK---L----DKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH---H----hCCcccCCHHHHH
Confidence 789999999999999999999999632 1 1 12 24567788999987765422 2 3345689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++|||||+++|+||+|||||++||..+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|+
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~ 222 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGE 222 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCe
Confidence 999999999999999999999999999999999999998778999999999999887 99999999985
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=348.57 Aligned_cols=199 Identities=25% Similarity=0.418 Sum_probs=172.0
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCC--Chhhhhcce
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLL--GLHDLRSRF 1345 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i--~l~~LR~~i 1345 (1479)
++++|++++|+. +++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 689999999963 4599999999999999999999999999999999999999999999999999764 345678899
Q ss_pred EEEcCcccccc-ccHhhhcCCCC----CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHH
Q 000463 1346 GIIPQEPVLFE-GTVRSNIDPIG----QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLG 1416 (1479)
Q Consensus 1346 ~iIpQdp~LF~-gTIR~NLdp~~----~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1416 (1479)
+++||++.+|. .|+++|+.... ..+ ++++.++++..++.+.....+ ..||+|||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP-----------SELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh-----------hhcCHHHHHHHHHH
Confidence 99999998886 59999996321 122 244667777777765544333 46899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1417 RVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1417 RALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||++++|+||+|||||++||.++...+.+.|++.. +++|+|+|||+++.+.. ||||++|++|+
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 213 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGR 213 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999998864 47899999999999976 99999999985
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=354.28 Aligned_cols=206 Identities=25% Similarity=0.410 Sum_probs=176.5
Q ss_pred CccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCEecCCC--C
Q 000463 1265 HGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE-----PSGGRIIIDGIDISLL--G 1337 (1479)
Q Consensus 1265 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~i--~ 1337 (1479)
...|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++... +
T Consensus 37 ~~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 37 ETVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 345899999999964 359999999999999999999999999999999999997 6899999999998653 4
Q ss_pred hhhhhcceEEEcCccccccccHhhhcCCC------CCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHH
Q 000463 1338 LHDLRSRFGIIPQEPVLFEGTVRSNIDPI------GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1338 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~------~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
...+|++++++||++.+|.+|+++|+... ....+++++++++..++...+.. .......+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHH
Confidence 56788999999999999989999999631 11124578888988888644321 122344679999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEE-EEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVI-VVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIl-VL~~G~ 1479 (1479)
|++|||||+++|+||||||||++||.++.+.+.+.|++..+++|+|+|+|+++.+.. |||++ +|++|+
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~ 257 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGE 257 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCE
Confidence 999999999999999999999999999999999999998777899999999999887 99975 568885
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=353.03 Aligned_cols=209 Identities=24% Similarity=0.377 Sum_probs=180.2
Q ss_pred CCCCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCEecC--
Q 000463 1262 WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP-----SGGRIIIDGIDIS-- 1334 (1479)
Q Consensus 1262 wp~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~-- 1334 (1479)
-|..+.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 11 ~~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~ 88 (265)
T PRK14252 11 SPTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88 (265)
T ss_pred cCCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc
Confidence 356788999999999974 3599999999999999999999999999999999999875 7999999998874
Q ss_pred --CCChhhhhcceEEEcCccccccccHhhhcCCCC--------CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCC
Q 000463 1335 --LLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIG--------QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDN 1404 (1479)
Q Consensus 1335 --~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~--------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1404 (1479)
....+.+|++++++||+|.+|.+|+++|+.... +..++++.++++.+++.+.+. ........+
T Consensus 89 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~ 161 (265)
T PRK14252 89 SPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFN 161 (265)
T ss_pred ccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCccc
Confidence 234567889999999999999999999996321 122467888888888764332 223344568
Q ss_pred CCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1405 WSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1405 LSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||+|||||++|||||+++|++|+|||||++||.++.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|+
T Consensus 162 LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~ 237 (265)
T PRK14252 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGE 237 (265)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999988777899999999999976 99999999985
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=357.42 Aligned_cols=213 Identities=23% Similarity=0.380 Sum_probs=173.4
Q ss_pred CccEEEEeeEEEecCCC--CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-----------
Q 000463 642 NIAVEVRDGVFSWDDEN--GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG----------- 708 (1479)
Q Consensus 642 ~~~i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g----------- 708 (1479)
+..|+++|++|.|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 35799999999996421 24699999999999999999999999999999999999999999999875
Q ss_pred ------------------eEEEEeccC--cCCCCcHHHHHhcCCCC-ChhhHHHHHHHhchHHHHHhcccCCccccccCC
Q 000463 709 ------------------TTAYVAQTS--WIQNGTIEENILFGLPM-NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERG 767 (1479)
Q Consensus 709 ------------------~iayv~Q~~--~i~~~Tv~enI~fg~~~-~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g 767 (1479)
.++||+|+| .+++.|++|||.|+... .....+..-++ .+.++.+... ....++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~---~~~l~~~gL~-~~~~~~~~ 174 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLA---KFYLNKMGLD-DSYLERSP 174 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHH---HHHHHHcCCC-hhHhcCCc
Confidence 168999998 68888999999987421 11111110111 1223333221 12356788
Q ss_pred CccchHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccc-cCCEEEEEeCCEE
Q 000463 768 INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLH-NVDLILVMREGMI 846 (1479)
Q Consensus 768 ~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~-~~D~i~~l~~G~i 846 (1479)
.+|||||||||+|||||+++|+++||||||++||+.+++.+++.+.+...+|+|+|+|||+++++. .||+|++|++|++
T Consensus 175 ~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i 254 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKI 254 (320)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999998766555456899999999999875 5999999999999
Q ss_pred EEecChHHHHhc
Q 000463 847 VQSGRYNALLNS 858 (1479)
Q Consensus 847 ~~~g~~~~l~~~ 858 (1479)
++.|+++++...
T Consensus 255 ~~~g~~~~~~~~ 266 (320)
T PRK13631 255 LKTGTPYEIFTD 266 (320)
T ss_pred EEeCCHHHHhcC
Confidence 999999988653
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=349.61 Aligned_cols=204 Identities=25% Similarity=0.377 Sum_probs=175.9
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCEecCCC--Chh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP-----SGGRIIIDGIDISLL--GLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i--~l~ 1339 (1479)
.++++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+.+| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999964 4599999999999999999999999999999999999885 799999999999653 345
Q ss_pred hhhcceEEEcCccccccccHhhhcCCCC---CC-C----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHH
Q 000463 1340 DLRSRFGIIPQEPVLFEGTVRSNIDPIG---QY-S----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~-s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
.+|++++++||++.+|..|+++|+.... .. + ++++.++++.+++.+.+... .......||+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDD-------LKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhH-------hhCCcccCCHHHHH
Confidence 6788999999999999999999996321 11 1 24567888888886543321 22345579999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++||||++++|+||||||||++||+.+...+.+.|++..++.|+|+|||+++.+.. ||||++|++|+
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~ 223 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGD 223 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCe
Confidence 999999999999999999999999999999999999988777899999999999877 99999999995
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=352.13 Aligned_cols=206 Identities=27% Similarity=0.422 Sum_probs=175.0
Q ss_pred CccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCEecCC--CC
Q 000463 1265 HGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE-----PSGGRIIIDGIDISL--LG 1337 (1479)
Q Consensus 1265 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~ 1337 (1479)
.--++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 22 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 22 KVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred ceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 336999999999974 359999999999999999999999999999999999987 699999999999853 35
Q ss_pred hhhhhcceEEEcCccccccccHhhhcCCC---CCCC-----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchH
Q 000463 1338 LHDLRSRFGIIPQEPVLFEGTVRSNIDPI---GQYS-----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQ 1409 (1479)
Q Consensus 1338 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~s-----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1409 (1479)
...+|++++++||+|.+|..|+++|+... ...+ ++.+.++++..++.+.+ +......+.+|||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-------~~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL-------KDRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchH-------HHHHhcCcccCCHHH
Confidence 56788999999999999999999999631 1222 22345666666554322 223344566899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1410 RQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1410 rQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+++|+++.+.. ||||++|++|+
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~ 243 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGY 243 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999998778999999999999876 99999999985
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=340.01 Aligned_cols=205 Identities=36% Similarity=0.542 Sum_probs=179.4
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------eE
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------TT 710 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~i 710 (1479)
.++++|+++.|++. .+++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 37899999999532 25699999999999999999999999999999999999999999999987 27
Q ss_pred EEEeccCcCCCCcHHHHHhcCCCC-ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCC
Q 000463 711 AYVAQTSWIQNGTIEENILFGLPM-NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCD 789 (1479)
Q Consensus 711 ayv~Q~~~i~~~Tv~enI~fg~~~-~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 789 (1479)
+|++|+++++..|++||+.++... ++.+..+.++..++.+.++..|.|..|.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 999999998888999999887543 3334556677778888788888888888888899999999999999999999999
Q ss_pred EEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEec
Q 000463 790 IYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSG 850 (1479)
Q Consensus 790 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g 850 (1479)
++||||||++||+.+.+.+++.+.+. .+++|+|++||+++++..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQL-LGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999998765544 3358999999999988779999999999997653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=365.19 Aligned_cols=192 Identities=29% Similarity=0.389 Sum_probs=163.5
Q ss_pred CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-----------------eEEEEeccCcCCC
Q 000463 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-----------------TTAYVAQTSWIQN 721 (1479)
Q Consensus 659 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-----------------~iayv~Q~~~i~~ 721 (1479)
++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++||+|++++++
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 35689999999999999999999999999999999999999999999987 3899999999986
Q ss_pred -CcHHHHHhcCCCCC---h-hhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEEEeCc
Q 000463 722 -GTIEENILFGLPMN---R-AKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDV 796 (1479)
Q Consensus 722 -~Tv~enI~fg~~~~---~-~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep 796 (1479)
.||+|||.|+.++. . +..+++.+. ++.+. .....++++.+|||||||||+|||||+.+|+++|||||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~------l~~vg--L~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALEL------LKLVG--LEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHH------HHhcC--CchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 69999999875431 1 222222222 22222 22346778899999999999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHHhc
Q 000463 797 FSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 797 ~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
||+||+.+++.+++.+.+... .|+|+|+|||+++++. .||+|++|++|++++.|+++++...
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999988776654 4899999999999875 5999999999999999999998764
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=352.81 Aligned_cols=201 Identities=21% Similarity=0.356 Sum_probs=178.1
Q ss_pred ccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcce
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRF 1345 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1345 (1479)
-.|+++|++++|+. ..+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++++
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999974 3599999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEcCcccccc-ccHhhhcCCCC--------C---CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHH
Q 000463 1346 GIIPQEPVLFE-GTVRSNIDPIG--------Q---YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLL 1413 (1479)
Q Consensus 1346 ~iIpQdp~LF~-gTIR~NLdp~~--------~---~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1413 (1479)
+++||++.+|. .|+++|+.... . ..+++++++++..++.+..... ...||+|||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----------VDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----------cccCChHHHHHH
Confidence 99999998875 59999996421 1 1234678899999887654433 347999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1414 CLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1414 ~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+||||++++|++|||||||++||+++.+.+.+.|++..+ ++|+|+++|+++.+.+ ||||++|++|+
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 221 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGK 221 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999998643 7899999999999877 99999999985
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=367.04 Aligned_cols=198 Identities=26% Similarity=0.404 Sum_probs=174.5
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.++++|++++|.. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence 4899999999964 3599999999999999999999999999999999999999999999999999876653 56899
Q ss_pred EEcCccccccc-cHhhhcCCC---CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHH
Q 000463 1347 IIPQEPVLFEG-TVRSNIDPI---GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRV 1418 (1479)
Q Consensus 1347 iIpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1418 (1479)
++||++.+|.. |+++|+... ...+ ++++.++++.+++.+.....| .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 999999632 1122 346788899999877665554 3689999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1419 MLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1419 LLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|+++|+||+|||||++||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~ 211 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 211 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999988653 7899999999999876 99999999995
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=315.46 Aligned_cols=193 Identities=25% Similarity=0.425 Sum_probs=163.9
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC----------------
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG---------------- 708 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g---------------- 708 (1479)
|+++|+++.|+.. .++|+||||+|++||++-|+||+||||||||++|.|+..|++|+|.++|
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999753 6799999999999999999999999999999999999999999999988
Q ss_pred eEEEEeccCc-CCCCcHHHHHhcCCCC---ChhhHH----HHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHH
Q 000463 709 TTAYVAQTSW-IQNGTIEENILFGLPM---NRAKYG----EVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQL 780 (1479)
Q Consensus 709 ~iayv~Q~~~-i~~~Tv~enI~fg~~~---~~~~~~----~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 780 (1479)
+||+|+|+.- ++..||.||+.|.... .+..|+ ++++..+|..... .-+.+|||||||||+|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~-----------~lP~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKAR-----------ALPSQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhh-----------cCccccCchHHHHHHH
Confidence 4899999975 4678999999997643 223332 2233333333332 3456899999999999
Q ss_pred HHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccC-CEEEEEeCCEEEEec
Q 000463 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSG 850 (1479)
Q Consensus 781 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~-D~i~~l~~G~i~~~g 850 (1479)
|||+..+|+++|-||||.+|||..+..|++.+.+....|.||+++|||.+.+... -+++.+++|+++...
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 9999999999999999999999999999976656667799999999999999875 899999999998643
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=355.40 Aligned_cols=202 Identities=25% Similarity=0.399 Sum_probs=171.4
Q ss_pred EEEEeeeeeecCCC---CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCC----Chhh
Q 000463 1268 VDLIDLQVRYRSNT---PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLL----GLHD 1340 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i----~l~~ 1340 (1479)
++++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997432 3599999999999999999999999999999999999999999999999998764 3567
Q ss_pred hhcceEEEcCcc--ccccccHhhhcCCC---CCCCHH----HHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHH
Q 000463 1341 LRSRFGIIPQEP--VLFEGTVRSNIDPI---GQYSDE----EIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1341 LR~~i~iIpQdp--~LF~gTIR~NLdp~---~~~sd~----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
+|++|+|+||+| .+|++|+++|+... ...+++ .+.++++..++.+.. ......+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESL----------FEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHHH
Confidence 888999999998 68889999999631 122333 345666777765311 12234579999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++|||||+++|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|+
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~ 222 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGK 222 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999864 37899999999999976 99999999985
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=344.92 Aligned_cols=200 Identities=28% Similarity=0.461 Sum_probs=168.3
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhh-hhcceE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD-LRSRFG 1346 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i~ 1346 (1479)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 578999999974 35999999999999999999999999999999999999999999999999998877655 467899
Q ss_pred EEcCccccccc-cHhhhcCCC-CC--CCHH-HHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhcc
Q 000463 1347 IIPQEPVLFEG-TVRSNIDPI-GQ--YSDE-EIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLK 1421 (1479)
Q Consensus 1347 iIpQdp~LF~g-TIR~NLdp~-~~--~sd~-eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1421 (1479)
++||++.+|.+ |+++|+... .. ..++ ...++++..+. ++........+||||||||++|||||++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~----------l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV----------LKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh----------HHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999987 999999631 11 1222 23344444331 2222233445799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1422 HSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1422 ~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+|++|+|||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~ 209 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGR 209 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999998754 7899999999999986 99999999985
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=346.10 Aligned_cols=203 Identities=31% Similarity=0.414 Sum_probs=166.3
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC----------------
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG---------------- 708 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g---------------- 708 (1479)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 46899999995 34799999999999999999999999999999999999999999999876
Q ss_pred eEEEEeccCcCCC-CcHHHHHhcCCCC----ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHH
Q 000463 709 TTAYVAQTSWIQN-GTIEENILFGLPM----NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARA 783 (1479)
Q Consensus 709 ~iayv~Q~~~i~~-~Tv~enI~fg~~~----~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 783 (1479)
.++|++|++.++. .|++||+.++... +....++. ..+-++.+... .....+..+|||||||||+||||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI-----VLEKLEAVGLR--GAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHH-----HHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHH
Confidence 2789999988766 5999999886321 11111111 11223333222 22356678999999999999999
Q ss_pred HhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 784 VYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 784 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
++.+|+++||||||++||+.+.+.+++.+.+... .|+|+|++||+++++.. ||+|++|++|++++.|+++++..
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 9999999999999999999999999876655544 48999999999998865 99999999999999999888764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=360.95 Aligned_cols=206 Identities=25% Similarity=0.366 Sum_probs=171.5
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-----------eEE
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-----------TTA 711 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-----------~ia 711 (1479)
..|+++|+++.|+ +.++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .++
T Consensus 5 ~~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 5 NFVVLKNITKRFG---SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred cEEEEEeEEEEEC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 4689999999995 34689999999999999999999999999999999999999999999988 379
Q ss_pred EEeccCcCC-CCcHHHHHhcCCCC---ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcC
Q 000463 712 YVAQTSWIQ-NGTIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD 787 (1479)
Q Consensus 712 yv~Q~~~i~-~~Tv~enI~fg~~~---~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 787 (1479)
||+|++.++ +.||+|||.|+... +....++ ...+-++.+... .....++.+|||||||||+|||||+.+
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~~gl~--~~~~r~~~~LSgGq~QRVaLARaL~~~ 154 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQ-----RVKEALELVDLA--GFEDRYVDQISGGQQQRVALARALILK 154 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHH-----HHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999887 57999999998542 1111111 111222333222 223567789999999999999999999
Q ss_pred CCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHHhc
Q 000463 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 788 ~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
|+++|||||||+||+..++.+.+.+.+...+ |+|+|+||||.+++. .||+|++|++|+|++.|+++++...
T Consensus 155 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 155 PKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999998766655443 899999999999875 5899999999999999999998764
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=364.46 Aligned_cols=200 Identities=25% Similarity=0.428 Sum_probs=177.4
Q ss_pred CccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCc--cEEEEcCEecCCCChhhhh
Q 000463 1265 HGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSG--GRIIIDGIDISLLGLHDLR 1342 (1479)
Q Consensus 1265 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~--G~I~IDG~dI~~i~l~~LR 1342 (1479)
.|.++++|++++|+. ..+|+|+||+|++||.++|+||||||||||+++|.|+.+|++ |+|.+||.++...+. .+
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 478999999999974 359999999999999999999999999999999999999999 999999999987665 35
Q ss_pred cceEEEcCccccccc-cHhhhcCC-C--CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHH
Q 000463 1343 SRFGIIPQEPVLFEG-TVRSNIDP-I--GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLC 1414 (1479)
Q Consensus 1343 ~~i~iIpQdp~LF~g-TIR~NLdp-~--~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1414 (1479)
++|++++|++.+|.. |+++|+.. . ...+ ++++.++++.++|.++..+.|. +||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~-----------~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA-----------QLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChh-----------hCCHHHHHHHH
Confidence 789999999999976 99999963 1 1223 3457788999999887766663 58999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC---CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1415 LGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA---ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1415 LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~---~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||||+++|++|+||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~ 216 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGR 216 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999988654 6899999999999876 99999999996
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=356.76 Aligned_cols=204 Identities=26% Similarity=0.370 Sum_probs=171.6
Q ss_pred CccEEEEeeeeeecCCC---CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCC----C-
Q 000463 1265 HGNVDLIDLQVRYRSNT---PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISL----L- 1336 (1479)
Q Consensus 1265 ~g~I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~----i- 1336 (1479)
.|.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 47899999999997532 259999999999999999999999999999999999999999999999999852 2
Q ss_pred ChhhhhcceEEEcCcc--ccccccHhhhcCCCC---CCCHH----HHHHHHHHcCch-HHHHhCcCCccccccCCCCCCC
Q 000463 1337 GLHDLRSRFGIIPQEP--VLFEGTVRSNIDPIG---QYSDE----EIWKSLERCQLK-DVVAAKPDKLDSLVADSGDNWS 1406 (1479)
Q Consensus 1337 ~l~~LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sd~----eI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLS 1406 (1479)
+...+|++++++||+| .+|..|+++|+.... ..+.+ .+.++++..++. +.. .....+||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~-----------~~~~~~LS 152 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYV-----------KRSPFELS 152 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-----------cCChhhCC
Confidence 4567888999999998 477889999996321 12332 344566666652 222 22345799
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1407 VGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1407 gGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|+
T Consensus 153 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~ 228 (289)
T PRK13645 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGK 228 (289)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999998753 7899999999999866 99999999985
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=348.41 Aligned_cols=199 Identities=24% Similarity=0.407 Sum_probs=175.6
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++++++
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 789999999964 459999999999999999999999999999999999999999999999999988888888889999
Q ss_pred EcCcccc-ccccHhhhcCCCC--C-C----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHh
Q 000463 1348 IPQEPVL-FEGTVRSNIDPIG--Q-Y----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1348 IpQdp~L-F~gTIR~NLdp~~--~-~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1419 (1479)
+||++.+ +..|+++|+.... . . .++++.++++..++.+.....+ ..||||||||++|||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDY-----------PQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999987 6779999996321 1 1 2346788899988876544432 46899999999999999
Q ss_pred c------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1420 L------KHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1420 L------r~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+ ++|++|+|||||++||+.+.+.+.+.|++.. ++.|||++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 218 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGR 218 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCE
Confidence 9 5999999999999999999999999999864 47899999999999975 99999999985
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=351.45 Aligned_cols=200 Identities=23% Similarity=0.381 Sum_probs=173.3
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChh---hhhc
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLH---DLRS 1343 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~---~LR~ 1343 (1479)
-|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 5899999999963 4599999999999999999999999999999999999999999999999999876543 3578
Q ss_pred ceEEEcCccccccc-cHhhhcCC----CCCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHH
Q 000463 1344 RFGIIPQEPVLFEG-TVRSNIDP----IGQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLC 1414 (1479)
Q Consensus 1344 ~i~iIpQdp~LF~g-TIR~NLdp----~~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1414 (1479)
+++++||++.+|.+ |+++|+.. ....+ ++++.++++..++.+.....+ .+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMP-----------SELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999987 99999962 11122 235667788888765443332 468999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1415 LGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1415 LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|+
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~ 221 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKK 221 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCE
Confidence 99999999999999999999999999999999998643 7899999999999977 99999999985
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=350.88 Aligned_cols=202 Identities=25% Similarity=0.390 Sum_probs=174.3
Q ss_pred ccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCEecCC--CCh
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP-----SGGRIIIDGIDISL--LGL 1338 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~--i~l 1338 (1479)
+.++++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. ...
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 46999999999964 3599999999999999999999999999999999999985 48999999999864 345
Q ss_pred hhhhcceEEEcCccccccccHhhhcCCC----CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHH
Q 000463 1339 HDLRSRFGIIPQEPVLFEGTVRSNIDPI----GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQR 1410 (1479)
Q Consensus 1339 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1410 (1479)
..+|++++++||+|.+|..|+++|+... +... ++.+.++++.+++.+.+... + ......||+|||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~----~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK---L----NKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH---h----cCCcccCCHHHH
Confidence 6788899999999999999999999631 1112 24467888888886554322 2 234567999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEe
Q 000463 1411 QLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVD 1476 (1479)
Q Consensus 1411 Qrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~ 1476 (1479)
||++|||||+++|++|+|||||++||+.+...+.+.|++..+++|||+|||+++.+.+ |||+++|+
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~ 223 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFS 223 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEe
Confidence 9999999999999999999999999999999999999998777999999999999987 99999997
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=346.94 Aligned_cols=197 Identities=26% Similarity=0.423 Sum_probs=174.7
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
|+++|++++|+. ..+++|+||+|++||++||+|+||||||||+++|+|+++|.+|+|.+||.++...+. .++.+++
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 578999999974 359999999999999999999999999999999999999999999999999987654 3678999
Q ss_pred EcCccccccc-cHhhhcCCC-C------CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHh
Q 000463 1348 IPQEPVLFEG-TVRSNIDPI-G------QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1348 IpQdp~LF~g-TIR~NLdp~-~------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1419 (1479)
+||+|.+|.+ |+++|+... . ...++++.++++..++.++....| .+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999976 999999621 1 112457788899999887776655 36899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+++|++|||||||++||..+.+.+.+.|++..+ ++|+|+++|+++.+.. ||||++|++|+
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~ 208 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGK 208 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999998653 7999999999999876 99999999985
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=359.67 Aligned_cols=202 Identities=26% Similarity=0.417 Sum_probs=172.9
Q ss_pred cEEEEeeeeeecCC-----------CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCC
Q 000463 1267 NVDLIDLQVRYRSN-----------TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISL 1335 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~-----------~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~ 1335 (1479)
-++++|++++|+.+ ...+++||||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 58999999999631 2459999999999999999999999999999999999999999999999999998
Q ss_pred CChhh---hhcceEEEcCcc--ccc-cccHhhhcCC----CC-CCCH----HHHHHHHHHcCchH-HHHhCcCCcccccc
Q 000463 1336 LGLHD---LRSRFGIIPQEP--VLF-EGTVRSNIDP----IG-QYSD----EEIWKSLERCQLKD-VVAAKPDKLDSLVA 1399 (1479)
Q Consensus 1336 i~l~~---LR~~i~iIpQdp--~LF-~gTIR~NLdp----~~-~~sd----~eI~~aL~~~~L~~-~i~~lp~gLdt~v~ 1399 (1479)
++.++ +|++|++|+||| .++ ..||++|+.. +. ..+. +.+.++++.+++.+ ...+.
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~--------- 158 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRY--------- 158 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCC---------
Confidence 87554 678999999999 477 4699999841 11 2333 34567788888843 32322
Q ss_pred CCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEe
Q 000463 1400 DSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVD 1476 (1479)
Q Consensus 1400 e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~ 1476 (1479)
..+||||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||+
T Consensus 159 --p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 159 --PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 346899999999999999999999999999999999999999999988653 7899999999999987 99999999
Q ss_pred CCC
Q 000463 1477 AGL 1479 (1479)
Q Consensus 1477 ~G~ 1479 (1479)
+|+
T Consensus 237 ~G~ 239 (331)
T PRK15079 237 LGH 239 (331)
T ss_pred CCE
Confidence 985
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=352.68 Aligned_cols=209 Identities=25% Similarity=0.423 Sum_probs=169.8
Q ss_pred cEEEEeeEEEecCCC--CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------
Q 000463 644 AVEVRDGVFSWDDEN--GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------- 708 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------- 708 (1479)
.++++|+++.|+... .+++|+||||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 478999999996422 24799999999999999999999999999999999999999999999877
Q ss_pred --eEEEEeccC--cCCCCcHHHHHhcCCC---CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHH
Q 000463 709 --TTAYVAQTS--WIQNGTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLA 781 (1479)
Q Consensus 709 --~iayv~Q~~--~i~~~Tv~enI~fg~~---~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 781 (1479)
.++|++|+| .+++.|++|||.|+.. .+.+...+. ..+-++.+...+.+...+++.+||||||||++||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iA 156 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR-----VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIA 156 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHH-----HHHHHHHcCCCchhhccCCcccCCHHHHHHHHHH
Confidence 269999997 5678899999998642 121111111 1122333322211234567889999999999999
Q ss_pred HHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHHh
Q 000463 782 RAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 782 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
|||+.+|+++||||||++||+.+++.+++.+.+...+ |+|+|++||+++++. .||+|++|++|++++.|+.+++.+
T Consensus 157 raL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 157 GVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999998765555444 899999999999985 599999999999999999988764
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=353.94 Aligned_cols=202 Identities=31% Similarity=0.474 Sum_probs=172.1
Q ss_pred cEEEEeeeeeecCCC---CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCC----Chh
Q 000463 1267 NVDLIDLQVRYRSNT---PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLL----GLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~---~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i----~l~ 1339 (1479)
.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999997422 3599999999999999999999999999999999999999999999999998653 245
Q ss_pred hhhcceEEEcCcc--ccccccHhhhcCCC---CCCC----HHHHHHHHHHcCch-HHHHhCcCCccccccCCCCCCCchH
Q 000463 1340 DLRSRFGIIPQEP--VLFEGTVRSNIDPI---GQYS----DEEIWKSLERCQLK-DVVAAKPDKLDSLVADSGDNWSVGQ 1409 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp--~LF~gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSgGQ 1409 (1479)
..|++++++||+| .+|..|+++|+... ...+ ++.+.++++.+++. ++... ...+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISK-----------SPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhC-----------CcccCCHHH
Confidence 6788999999998 57888999999521 1222 23467778888775 33222 234799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1410 RQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1410 rQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. ++.|||++||+++.+.. ||||++|++|+
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~ 222 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGK 222 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999864 47899999999999876 99999999985
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=345.22 Aligned_cols=200 Identities=25% Similarity=0.392 Sum_probs=168.7
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhh-hhcce
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD-LRSRF 1345 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i 1345 (1479)
-++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..+ .|+++
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999964 45999999999999999999999999999999999999999999999999998887654 67889
Q ss_pred EEEcCccccccc-cHhhhcCCCCC-CC----HHHHHHHHHHc-CchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHH
Q 000463 1346 GIIPQEPVLFEG-TVRSNIDPIGQ-YS----DEEIWKSLERC-QLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRV 1418 (1479)
Q Consensus 1346 ~iIpQdp~LF~g-TIR~NLdp~~~-~s----d~eI~~aL~~~-~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1418 (1479)
+++||++.+|.+ |+++|+..... .+ ++++.++++.. ++.+. .......||+|||||++||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHER-----------RIQRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHH-----------HhCchhhCCHHHHHHHHHHHH
Confidence 999999999986 99999964211 12 22334444443 23221 122345799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1419 MLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1419 LLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
++++|+||||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.+ ||||++|++|+
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 214 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGH 214 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCE
Confidence 999999999999999999999999999998864 47999999999998766 99999999985
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=348.59 Aligned_cols=200 Identities=27% Similarity=0.415 Sum_probs=171.2
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCC--------h
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG--------L 1338 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~--------l 1338 (1479)
-++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 3899999999964 35999999999999999999999999999999999999999999999999987542 3
Q ss_pred hhhhcceEEEcCcccccc-ccHhhhcCCC----CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchH
Q 000463 1339 HDLRSRFGIIPQEPVLFE-GTVRSNIDPI----GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQ 1409 (1479)
Q Consensus 1339 ~~LR~~i~iIpQdp~LF~-gTIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1409 (1479)
..+|++++++||+|.+|. .|+++|+... .... ++.+.++++..++.+... ....+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKET-----------SYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-----------CChhhCChHH
Confidence 467889999999999886 6999999631 1222 234666777777654322 2345799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1410 RQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1410 rQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|+
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 221 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGR 221 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999999998865 37899999999999976 99999999985
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=357.53 Aligned_cols=198 Identities=24% Similarity=0.419 Sum_probs=175.5
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
++++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++++
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999963 459999999999999999999999999999999999999999999999999976 44678899999
Q ss_pred EcCccccccc-cHhhhcCCCC---CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHh
Q 000463 1348 IPQEPVLFEG-TVRSNIDPIG---QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1348 IpQdp~LF~g-TIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1419 (1479)
+||+|.+|.+ |+++||.... ..+ ++++.++++..++.+..... ..+||+|||||++|||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKK-----------IGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCc-----------hhhCCHHHHHHHHHHHHH
Confidence 9999999977 9999996321 122 35677788888877654322 347999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+++|++|+|||||++||+.+.+.+++.|++..+++|||+++|+++.+.+ ||||++|++|+
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~ 209 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGK 209 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999998778999999999999987 99999999995
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=358.02 Aligned_cols=199 Identities=28% Similarity=0.420 Sum_probs=171.2
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 5899999999964 3599999999999999999999999999999999999999999999999998754 356789999
Q ss_pred EEcCcccccc-ccHhhhcCCC---CCCCH----HHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHH
Q 000463 1347 IIPQEPVLFE-GTVRSNIDPI---GQYSD----EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRV 1418 (1479)
Q Consensus 1347 iIpQdp~LF~-gTIR~NLdp~---~~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1418 (1479)
++||++.+|. .|+++|+..+ ...++ +++.++++.+++.+.. +..+ .+||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-------~~~~----~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-------DVRV----ALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHh-------cCch----hhCCHHHHHHHHHHHH
Confidence 9999999885 5999999621 12333 2345567777765433 3333 3699999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1419 MLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1419 LLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|+++|++|||||||++||+.+.+.+.+.|++.. +++|||+++|+++.+.+ ||||++|++|+
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGR 212 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999864 47899999999999976 99999999995
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=348.79 Aligned_cols=204 Identities=27% Similarity=0.375 Sum_probs=175.8
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCEecCCC--Chh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP-----SGGRIIIDGIDISLL--GLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i--~l~ 1339 (1479)
-|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 4899999999963 3599999999999999999999999999999999999763 489999999999876 456
Q ss_pred hhhcceEEEcCccccccccHhhhcCCCC---C-C----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHH
Q 000463 1340 DLRSRFGIIPQEPVLFEGTVRSNIDPIG---Q-Y----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~-~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
..|++++++||+|.+|.+|+++|+.... . . .++++.++++.+++.+.+. +.....+.+||+||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHHH
Confidence 7788999999999999999999997321 1 1 1345677777777754432 2234456689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++||||++.+|+++||||||++||.++.+.+.+.|++..+++|||+++|+++.+.. ||+|++|++|+
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~ 225 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGK 225 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCE
Confidence 999999999999999999999999999999999999988777999999999999976 99999999985
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=362.68 Aligned_cols=199 Identities=24% Similarity=0.433 Sum_probs=177.5
Q ss_pred ccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcce
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRF 1345 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1345 (1479)
..++++|++++|.. ..+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++..++.+ ++++
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 35999999999964 3589999999999999999999999999999999999999999999999999877654 4689
Q ss_pred EEEcCccccccc-cHhhhcCC-CC--CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHH
Q 000463 1346 GIIPQEPVLFEG-TVRSNIDP-IG--QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGR 1417 (1479)
Q Consensus 1346 ~iIpQdp~LF~g-TIR~NLdp-~~--~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1417 (1479)
++++|++.+|.. ||++||.. .. ..+ ++++.++++..++.++....|. .||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~-----------~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPH-----------QLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChh-----------hCCHHHHHHHHHHH
Confidence 999999999976 99999963 21 223 3467888999999888777763 58999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1418 VMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1418 ALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+.+.+.. ||||++|++|+
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~ 222 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGR 222 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999998764 7899999999999876 99999999996
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=344.72 Aligned_cols=200 Identities=27% Similarity=0.503 Sum_probs=170.9
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhh-hhcce
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD-LRSRF 1345 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~-LR~~i 1345 (1479)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 3889999999963 35999999999999999999999999999999999999999999999999998877654 57889
Q ss_pred EEEcCccccccc-cHhhhcCCCC----CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHH
Q 000463 1346 GIIPQEPVLFEG-TVRSNIDPIG----QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLG 1416 (1479)
Q Consensus 1346 ~iIpQdp~LF~g-TIR~NLdp~~----~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1416 (1479)
+++||++.+|.+ |+++|+.... ..+ ++.+.+.++..++.+. .......||||||||++||
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHL-----------RDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHH-----------hhcchhhCCHHHHHHHHHH
Confidence 999999998875 9999997431 122 2345556666665443 2233457999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1417 RVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1417 RALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||++++|++|||||||++||+.+...+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|+
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~ 214 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGH 214 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCe
Confidence 99999999999999999999999999999998764 47899999999988866 99999999986
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=357.78 Aligned_cols=203 Identities=25% Similarity=0.426 Sum_probs=172.8
Q ss_pred cEEEEeeeeeecCC--------CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCCh
Q 000463 1267 NVDLIDLQVRYRSN--------TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGL 1338 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~--------~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l 1338 (1479)
-|+++|++++|+.. ...+|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2469999999999999999999999999999999999999999999999999988865
Q ss_pred h---hhhcceEEEcCccc--cccc-cHhhhcC-CC---CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCC
Q 000463 1339 H---DLRSRFGIIPQEPV--LFEG-TVRSNID-PI---GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDN 1404 (1479)
Q Consensus 1339 ~---~LR~~i~iIpQdp~--LF~g-TIR~NLd-p~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1404 (1479)
+ .+|++|++|||||. |+.. |+.+|+. +. ...+ .+++.++|+++++.+. .++.. ...
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~~----p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE------HYDRY----PHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH------HhcCC----Ccc
Confidence 4 56789999999994 5543 8888874 11 1122 3567888999988532 22322 246
Q ss_pred CCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1405 WSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1405 LSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||||||||++|||||+.+|+|||+||||++||..+.+.|.+.|++..+ ++|+|+|||+++.+.. ||||+||++|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ 232 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGR 232 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999998653 7899999999999986 99999999995
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=348.80 Aligned_cols=201 Identities=28% Similarity=0.437 Sum_probs=173.7
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCEecCC--CChh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE-----PSGGRIIIDGIDISL--LGLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~--i~l~ 1339 (1479)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.+||.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 4899999999964 359999999999999999999999999999999999986 479999999999853 4556
Q ss_pred hhhcceEEEcCccccccccHhhhcCCCC---CC---CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHH
Q 000463 1340 DLRSRFGIIPQEPVLFEGTVRSNIDPIG---QY---SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLL 1413 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~---sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1413 (1479)
.+|++++++||+|.+|..|+++|+.... .. .++++.++++.+++.+.+... ......+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK-------LKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH-------hcCCcccCCHHHHHHH
Confidence 7889999999999999899999996421 11 234566778888887655321 2334568999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEe
Q 000463 1414 CLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVD 1476 (1479)
Q Consensus 1414 ~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~ 1476 (1479)
+|||||+++|+||||||||++||+++...+.+.|++..+++|||++||+++.+.. ||||++|+
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~ 224 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFN 224 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999988777899999999999876 99999998
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=348.39 Aligned_cols=199 Identities=25% Similarity=0.411 Sum_probs=175.1
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 689999999964 359999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EcCccc-cccccHhhhcCCCC----C-------CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHH
Q 000463 1348 IPQEPV-LFEGTVRSNIDPIG----Q-------YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCL 1415 (1479)
Q Consensus 1348 IpQdp~-LF~gTIR~NLdp~~----~-------~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~L 1415 (1479)
+||+|. .+..|+++|+.... . ..++++.++++++++.+..... ...||+|||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD-----------MSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-----------cccCCHHHHHHHHH
Confidence 999995 45679999995321 0 1234678889998887654332 34699999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC-CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1416 GRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA-ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1416 ARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~-~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||++.+|+++||||||++||+.+...+.+.|++..+ +.|+|+++|+++.+.. ||||++|++|+
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 214 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGR 214 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999998643 6899999999999965 99999999986
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=349.73 Aligned_cols=202 Identities=28% Similarity=0.435 Sum_probs=171.5
Q ss_pred EEEEeeeeeecCC-------CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhh
Q 000463 1268 VDLIDLQVRYRSN-------TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD 1340 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~-------~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~ 1340 (1479)
++++|++++|+.. ...+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.++
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999642 346999999999999999999999999999999999999999999999999998876544
Q ss_pred ---hhcceEEEcCccc--cc-cccHhhhcCC----CCC----CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCC
Q 000463 1341 ---LRSRFGIIPQEPV--LF-EGTVRSNIDP----IGQ----YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWS 1406 (1479)
Q Consensus 1341 ---LR~~i~iIpQdp~--LF-~gTIR~NLdp----~~~----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1406 (1479)
+|++++++||+|. ++ ..|+++|+.. ... ..++++.++++..++.+.. + .....+||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------~----~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED------A----DKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh------h----hCChhhCC
Confidence 6788999999983 44 4699999841 111 1245677888888775321 1 22345799
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1407 VGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1407 gGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||||||++|||||+.+|+||||||||++||+++.+.+.+.|++..+ +.|||+|+|+++.+.. ||+|++|++|+
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 228 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQ 228 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCE
Confidence 9999999999999999999999999999999999999999998653 7899999999999986 99999999985
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=353.41 Aligned_cols=207 Identities=23% Similarity=0.385 Sum_probs=168.0
Q ss_pred EEEEeeEEEecCCC--CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-------------
Q 000463 645 VEVRDGVFSWDDEN--GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------- 709 (1479)
Q Consensus 645 i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------- 709 (1479)
++++|++++|++.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996422 246999999999999999999999999999999999999999999999872
Q ss_pred ----EEEEeccC--cCCCCcHHHHHhcCCC---CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHH
Q 000463 710 ----TAYVAQTS--WIQNGTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQL 780 (1479)
Q Consensus 710 ----iayv~Q~~--~i~~~Tv~enI~fg~~---~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 780 (1479)
++||+|+| .+++.||+|||.|+.. .+....++. ..+-++.+.... .....++.+|||||||||+|
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~-~~~~~~~~~LSgGq~qrv~l 156 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK-----AREMIELVGLPE-ELLARSPFELSGGQMRRVAI 156 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHCCCCh-hhhhCCcccCCHHHHHHHHH
Confidence 79999997 5778899999998742 121111111 112222222110 11245678999999999999
Q ss_pred HHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 781 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
||||+.+|+++||||||++||+.+.+.+.+.+.+...+ |+|+|++||+++++.. ||+|++|++|++++.|+++++.+
T Consensus 157 AraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 157 AGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999998766555444 8999999999999864 99999999999999999988764
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=350.09 Aligned_cols=204 Identities=25% Similarity=0.409 Sum_probs=175.1
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCEecCCCC-hhh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP-----SGGRIIIDGIDISLLG-LHD 1340 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i~-l~~ 1340 (1479)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 5899999999964 4599999999999999999999999999999999999986 6999999999998663 456
Q ss_pred hhcceEEEcCccccccccHhhhcCCC----CCCCHHHH----HHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHH
Q 000463 1341 LRSRFGIIPQEPVLFEGTVRSNIDPI----GQYSDEEI----WKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQL 1412 (1479)
Q Consensus 1341 LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~sd~eI----~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1412 (1479)
+|++++|+||+|.+|..|+++|+... ...+++++ .++++.+++.+.. ++.+.....+||+|||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHHHH
Confidence 78999999999999999999999632 12344443 4556666665432 122334566899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1413 LCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1413 l~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
++|||||+++|+||||||||++||..+.+.+.+.|++..+++|||+|+|+++.+.+ ||||++|++|+
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~ 239 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGR 239 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999987667999999999999876 99999999985
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=346.77 Aligned_cols=204 Identities=27% Similarity=0.414 Sum_probs=175.9
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCEecC-CCChhh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP-----SGGRIIIDGIDIS-LLGLHD 1340 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~-~i~l~~ 1340 (1479)
.++++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4889999999973 4599999999999999999999999999999999999986 5999999999985 456677
Q ss_pred hhcceEEEcCccccccccHhhhcCCC---CCC-C----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHH
Q 000463 1341 LRSRFGIIPQEPVLFEGTVRSNIDPI---GQY-S----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQL 1412 (1479)
Q Consensus 1341 LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~-s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1412 (1479)
+|+.++++||+|.+|.+|+++|+... ... + ++++.++++.+++.+.+. .........||+|||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHHH
Confidence 89999999999999999999999632 111 1 235567788887765432 12233445799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1413 LCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1413 l~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
++|||||+++|+||||||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||||++|++|+
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~ 221 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGE 221 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999998777999999999999887 99999999995
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=360.99 Aligned_cols=205 Identities=30% Similarity=0.405 Sum_probs=172.8
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-----------EEE
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-----------TAY 712 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-----------iay 712 (1479)
.++++|++++|+ +..+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+ ++|
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFG---AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEEeC---CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 589999999995 246899999999999999999999999999999999999999999999883 899
Q ss_pred EeccCcCC-CCcHHHHHhcCCCC---ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCC
Q 000463 713 VAQTSWIQ-NGTIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDC 788 (1479)
Q Consensus 713 v~Q~~~i~-~~Tv~enI~fg~~~---~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 788 (1479)
|+|++-++ +.||+|||.|+... +....++ ..++-++.+... .....++.+|||||||||+|||||+.+|
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~l~L~--~~~~~~~~~LSgGq~QRvaLARaL~~~P 153 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAE-----RVAELLDLVGLP--GSERKYPGQLSGGQQQRVALARALATSP 153 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCC--chhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999887 57999999998532 1111111 122334444322 2345788899999999999999999999
Q ss_pred CEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHHhc
Q 000463 789 DIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 789 ~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
+++|||||||+||+.+++++.+.+.+...+ |.|+|+||||.+++. .||+|++|++|++++.|+++++.+.
T Consensus 154 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 154 GLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999998777665544 899999999999875 4999999999999999999999864
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=349.86 Aligned_cols=208 Identities=27% Similarity=0.418 Sum_probs=169.7
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------eE
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------TT 710 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~i 710 (1479)
.++++|++++|++....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 58999999999643334699999999999999999999999999999999999999999999988 26
Q ss_pred EEEeccCc--CCCCcHHHHHhcCCC---CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHh
Q 000463 711 AYVAQTSW--IQNGTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVY 785 (1479)
Q Consensus 711 ayv~Q~~~--i~~~Tv~enI~fg~~---~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 785 (1479)
+|++|+|. ++..||+|||.|+.. .+++...+. ..+-++.+.. .......+.+||||||||++||||++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~gL--~~~~~~~~~~LSgGq~qrv~lAral~ 156 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER-----VNEALELVGM--QDFKEREPARLSGGQKQRVAIAGAVA 156 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHH-----HHHHHHHCCC--HhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999984 567899999998743 122111111 1112222221 12234567899999999999999999
Q ss_pred cCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhc
Q 000463 786 QDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 786 ~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
.+|+++||||||++||+.+.+.+++.+.+...+ |+|+|++||+++.+..||+|++|++|+++..|+++++...
T Consensus 157 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 157 MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999998766555444 8999999999999877999999999999999998887643
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=347.26 Aligned_cols=200 Identities=26% Similarity=0.421 Sum_probs=171.0
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhh-hcce
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL-RSRF 1345 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~i 1345 (1479)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 5899999999963 459999999999999999999999999999999999999999999999999988876665 4569
Q ss_pred EEEcCccccccc-cHhhhcCCCCC----------------C--C----HHHHHHHHHHcCchHHHHhCcCCccccccCCC
Q 000463 1346 GIIPQEPVLFEG-TVRSNIDPIGQ----------------Y--S----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSG 1402 (1479)
Q Consensus 1346 ~iIpQdp~LF~g-TIR~NLdp~~~----------------~--s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1402 (1479)
+++||+|.+|.+ |+++|+..... . . .+++.++++..++.+.. ....
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~ 151 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHA-----------NRQA 151 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhh-----------hCCh
Confidence 999999999986 99999973210 0 0 12345556666554432 3344
Q ss_pred CCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1403 DNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1403 ~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
.+||+|||||++||||++.+|+||||||||++||+.+.+.+.+.|++..+ ++|||+++|+++.+.+ ||+|++|++|+
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 231 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 57999999999999999999999999999999999999999999988643 7899999999999977 99999999985
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=354.00 Aligned_cols=207 Identities=28% Similarity=0.460 Sum_probs=177.6
Q ss_pred CCccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCEecCCC--
Q 000463 1264 AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE-----PSGGRIIIDGIDISLL-- 1336 (1479)
Q Consensus 1264 ~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~i-- 1336 (1479)
.+..|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...
T Consensus 42 ~~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 42 GDAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred CCceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3446999999999974 359999999999999999999999999999999999986 6899999999998753
Q ss_pred ChhhhhcceEEEcCccccccccHhhhcCCC-C-------------------CCCHHHHHHHHHHcCchHHHHhCcCCccc
Q 000463 1337 GLHDLRSRFGIIPQEPVLFEGTVRSNIDPI-G-------------------QYSDEEIWKSLERCQLKDVVAAKPDKLDS 1396 (1479)
Q Consensus 1337 ~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~-------------------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt 1396 (1479)
+...+|++++|+||++.+|.+|+++|+... . +..++++.++++.+++.+.+. .
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~ 192 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN-------D 192 (305)
T ss_pred cHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh-------H
Confidence 456788999999999999999999999631 0 012455778888887754332 2
Q ss_pred cccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEE-EE
Q 000463 1397 LVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRV-IV 1474 (1479)
Q Consensus 1397 ~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrI-lV 1474 (1479)
.......+||||||||++|||||+++|+||||||||++||+.+...+.+.|++..++.|+|+|+|+++.+.. |||| ++
T Consensus 193 ~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 193 RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred HhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 334456789999999999999999999999999999999999999999999998777899999999999877 9997 56
Q ss_pred EeCCC
Q 000463 1475 VDAGL 1479 (1479)
Q Consensus 1475 L~~G~ 1479 (1479)
|++|+
T Consensus 273 l~~G~ 277 (305)
T PRK14264 273 LTGGE 277 (305)
T ss_pred ecCCE
Confidence 79885
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=343.10 Aligned_cols=197 Identities=27% Similarity=0.450 Sum_probs=172.9
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
|+++|++++|+. +.+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+++++
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 578999999974 359999999999999999999999999999999999999999999999999986543 4788999
Q ss_pred EcCccccccc-cHhhhcCCCC---CC----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHh
Q 000463 1348 IPQEPVLFEG-TVRSNIDPIG---QY----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1348 IpQdp~LF~g-TIR~NLdp~~---~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1419 (1479)
+||+|.+|.+ |+++|+.... .. .++++.+++++.++.+.....+ .+||+||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP-----------NQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999976 9999996321 11 2456778888888876654433 46999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+++|++++|||||++||.++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~ 208 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGK 208 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCE
Confidence 999999999999999999999999999998654 7899999999999877 99999999985
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=348.77 Aligned_cols=202 Identities=27% Similarity=0.402 Sum_probs=174.1
Q ss_pred ccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCEecCC--CCh
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP-----SGGRIIIDGIDISL--LGL 1338 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~--i~l 1338 (1479)
-.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 19 SVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred ceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 36999999999974 3599999999999999999999999999999999999863 69999999999864 344
Q ss_pred hhhhcceEEEcCccccccccHhhhcCCCC---C---CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHH
Q 000463 1339 HDLRSRFGIIPQEPVLFEGTVRSNIDPIG---Q---YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQL 1412 (1479)
Q Consensus 1339 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~---~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQr 1412 (1479)
..+|++++++||++.+|.+|+++|+.... . ..++++.++++.+++.+.+... + ......||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~----~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDK---L----KEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHH---h----cCCcccCCHHHHHH
Confidence 56789999999999999899999996421 1 1245567788888886554321 2 23456799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEe
Q 000463 1413 LCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVD 1476 (1479)
Q Consensus 1413 l~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~ 1476 (1479)
++|||||+++|+||||||||++||..+...+.+.|++..+++|||+|+|+++.+.. ||||++|+
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFN 234 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999998778999999999999976 99999997
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=340.17 Aligned_cols=195 Identities=25% Similarity=0.436 Sum_probs=172.4
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
++++|++++|+. . ..|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .++++++
T Consensus 2 l~~~~l~~~~~~--~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHH--L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECC--c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 689999999963 2 249999999999999999999999999999999999999999999999886644 3578999
Q ss_pred EcCccccccc-cHhhhcCC-CC-C-----CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHh
Q 000463 1348 IPQEPVLFEG-TVRSNIDP-IG-Q-----YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1348 IpQdp~LF~g-TIR~NLdp-~~-~-----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1419 (1479)
+||+|.+|.+ |+++|+.. +. . ..++++.++++.+++.+.+...|. .||+|||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG-----------QLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcc-----------cCCHHHHHHHHHHHHH
Confidence 9999999986 99999963 21 1 124678999999999887776653 5899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+++|++|||||||++||.++.+.+.+.|++..+ ++|+|+++|+++.+.. ||||++|++|+
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 207 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGR 207 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999998753 7899999999999876 99999999985
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=350.35 Aligned_cols=210 Identities=24% Similarity=0.398 Sum_probs=169.1
Q ss_pred EEEEeeEEEecCCC--CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-------------
Q 000463 645 VEVRDGVFSWDDEN--GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------- 709 (1479)
Q Consensus 645 i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------- 709 (1479)
|+++|++|+|+... .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996322 136999999999999999999999999999999999999999999999872
Q ss_pred ----EEEEeccC--cCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHH
Q 000463 710 ----TAYVAQTS--WIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARA 783 (1479)
Q Consensus 710 ----iayv~Q~~--~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 783 (1479)
++|++|+| .++..|+.||+.|+.........+..+ ...+-++.+... .....+.+.+||||||||++||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~l~~~~L~-~~~~~~~~~~LSgGqkqrvaiA~a 158 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK--IAAEKLEMVGLA-DEFWEKSPFELSGGQMRRVAIAGI 158 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH--HHHHHHHHcCCC-hhhccCCcccCCHHHHHHHHHHHH
Confidence 68999998 677889999999874311000111111 112223333221 112356778999999999999999
Q ss_pred HhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHHh
Q 000463 784 VYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 784 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
|+.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++++. .||+|++|++|++++.|+++++..
T Consensus 159 L~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 159 LAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 99999999999999999999999998765444446899999999999986 599999999999999999998864
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=350.18 Aligned_cols=200 Identities=26% Similarity=0.435 Sum_probs=172.8
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCC--CChhhhhcce
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISL--LGLHDLRSRF 1345 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~--i~l~~LR~~i 1345 (1479)
++++|++++|+.+ +++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.+++. .+...+|++|
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 6899999999633 359999999999999999999999999999999999999999999999999852 2345678999
Q ss_pred EEEcCcc--ccccccHhhhcCCCC---CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHH
Q 000463 1346 GIIPQEP--VLFEGTVRSNIDPIG---QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLG 1416 (1479)
Q Consensus 1346 ~iIpQdp--~LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1416 (1479)
+++||+| .+|..|+++|+.... ..+ .+++.++++.+++.++.... ..+||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKP-----------PHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC-----------hhhCCHHHHHHHHHH
Confidence 9999998 578899999995211 122 24577888888886554332 236999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1417 RVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1417 RALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||++++|++|||||||++||+.+...+.+.|++.. ++.|||+++|+++.+.. ||||++|++|+
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~ 214 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGK 214 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999875 37899999999999986 99999999985
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=350.61 Aligned_cols=199 Identities=26% Similarity=0.386 Sum_probs=171.6
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecC--CCChhhhhcce
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDIS--LLGLHDLRSRF 1345 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~--~i~l~~LR~~i 1345 (1479)
++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 689999999963 35999999999999999999999999999999999999999999999999985 33456778899
Q ss_pred EEEcCccc--cccccHhhhcCCC---CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHH
Q 000463 1346 GIIPQEPV--LFEGTVRSNIDPI---GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLG 1416 (1479)
Q Consensus 1346 ~iIpQdp~--LF~gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1416 (1479)
+++||+|. +|..|+.+|+... ...+ .+++.++++..++.++.... ..+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQP-----------IQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCC-----------chhCCHHHHHHHHHH
Confidence 99999985 6778999998631 1122 23466788888886654322 347999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1417 RVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1417 RALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||+.+|+||||||||++||+.+...+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|+
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~ 213 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQ 213 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999864 47899999999999976 99999999985
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=351.60 Aligned_cols=200 Identities=31% Similarity=0.561 Sum_probs=177.9
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.++++|++.+|.. ...+|+||||+|++||.+|++||||||||||+++|.|+++|++|+|.++|.|...- ..+.|+++|
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 4788999999973 24599999999999999999999999999999999999999999999999998755 678899999
Q ss_pred EEcCccccccc-cHhhhcCCCC-------CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHH
Q 000463 1347 IIPQEPVLFEG-TVRSNIDPIG-------QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRV 1418 (1479)
Q Consensus 1347 iIpQdp~LF~g-TIR~NLdp~~-------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1418 (1479)
|+||+|.+++. |++|||+.+. ...++++.+.++..+|.+.- +..+ ..||+|||||+.||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~~----~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKKV----RTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Ccch----hhcCHHHHHHHHHHHH
Confidence 99999998877 9999997532 12357899999999998732 2222 3589999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC-C-cEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1419 MLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA-A-CTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1419 LLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~-~-~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|+.+|++|||||||++||+.+...+.+.|++..+ + +||++.||.++.+.. ||||++|++|+
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~ 214 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGK 214 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999876 4 699999999999998 99999999995
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=329.85 Aligned_cols=171 Identities=27% Similarity=0.526 Sum_probs=156.0
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCCh-hhhhcce
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGL-HDLRSRF 1345 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l-~~LR~~i 1345 (1479)
.++++|++++| +|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999998 8999999999999999999999999999999999999999999999999988864 4568899
Q ss_pred EEEcCcc----ccccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhcc
Q 000463 1346 GIIPQEP----VLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLK 1421 (1479)
Q Consensus 1346 ~iIpQdp----~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1421 (1479)
+++||+| .++..|+++|+..... ||+|||||++||||+++
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 3445799999863210 89999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1422 HSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1422 ~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+|++|+|||||++||+++.+.+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|+
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~ 181 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGR 181 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCc
Confidence 999999999999999999999999999864 47899999999999988 99999999996
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=347.67 Aligned_cols=201 Identities=27% Similarity=0.431 Sum_probs=171.2
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCEecCC--CChh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP-----SGGRIIIDGIDISL--LGLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~--i~l~ 1339 (1479)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 5899999999964 3599999999999999999999999999999999999974 69999999999854 4456
Q ss_pred hhhcceEEEcCcccccc-ccHhhhcCCC----CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHH
Q 000463 1340 DLRSRFGIIPQEPVLFE-GTVRSNIDPI----GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQR 1410 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~LF~-gTIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1410 (1479)
.+|+.++++||++.+|. .|+++|+... +..+ ++++.++++.+++.+.+.. .......+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD-------RLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 78899999999999997 4999999521 1111 3456778888887544321 12233457999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEe
Q 000463 1411 QLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVD 1476 (1479)
Q Consensus 1411 Qrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~ 1476 (1479)
||++||||++++|++|||||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||||++|+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~ 221 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFN 221 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999987667899999999999876 99999996
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=359.84 Aligned_cols=209 Identities=32% Similarity=0.434 Sum_probs=171.9
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-----------EE
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-----------TA 711 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-----------ia 711 (1479)
..++++|++++|+ +.++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|. ++
T Consensus 13 ~~L~l~~l~~~~~---~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 13 PLVELRGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred ceEEEEEEEEEEC---CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 4689999999995 346899999999999999999999999999999999999999999999984 89
Q ss_pred EEeccCcCC-CCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCE
Q 000463 712 YVAQTSWIQ-NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDI 790 (1479)
Q Consensus 712 yv~Q~~~i~-~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 790 (1479)
||+|++.++ ..||+|||.|+.........+. .....+-++.+... .....++.+|||||||||+|||||+.+|++
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~--~~~~~~~l~~~~l~--~~~~~~p~~LSgGq~QRVaLARaL~~~P~l 165 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEI--TPRVMEALRMVQLE--EFAQRKPHQLSGGQQQRVAIARAVVNKPKV 165 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHH--HHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998876 5699999999854211000000 00112223333222 234567789999999999999999999999
Q ss_pred EEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHHhc
Q 000463 791 YLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 791 llLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
+|||||||+||++.++.+.+.+.+...+ |.|+|+||||.+++. .+|+|++|++|+|++.|+++++.+.
T Consensus 166 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 166 LLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999998776655543 899999999999865 5999999999999999999998764
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=359.37 Aligned_cols=199 Identities=30% Similarity=0.482 Sum_probs=172.1
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.|+++|++++|+. ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+ ...|++|+
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 5999999999964 35999999999999999999999999999999999999999999999999997654 56789999
Q ss_pred EEcCccccc-cccHhhhcCCCC---CCCH----HHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHH
Q 000463 1347 IIPQEPVLF-EGTVRSNIDPIG---QYSD----EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRV 1418 (1479)
Q Consensus 1347 iIpQdp~LF-~gTIR~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1418 (1479)
++||++.+| ..|+++|+..+. ..+. +.+.++++.+++.+. .+..+ .+||+|||||++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~-------~~~~~----~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-------ADARV----SDLSGGMKRRLTLARA 186 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-------hCCCh----hhCCHHHHHHHHHHHH
Confidence 999999987 459999996322 1222 334566777766543 34443 3699999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1419 MLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1419 LLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|+.+|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.+ ||||++|++|+
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~ 249 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGR 249 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999864 47999999999999977 99999999995
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=346.52 Aligned_cols=204 Identities=25% Similarity=0.389 Sum_probs=173.8
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC--C---CccEEEEcCEecCC--CChh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE--P---SGGRIIIDGIDISL--LGLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~--p---~~G~I~IDG~dI~~--i~l~ 1339 (1479)
-|+++|++++|+. +.+|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999974 459999999999999999999999999999999999975 4 59999999999864 3455
Q ss_pred hhhcceEEEcCccccccccHhhhcCCC---CCC-----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHH
Q 000463 1340 DLRSRFGIIPQEPVLFEGTVRSNIDPI---GQY-----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~-----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
.+|++++++||+|.+|..|+++|+... ... .++++.++++.+++.+.+. ........+||+||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHHH
Confidence 678899999999999999999999631 111 1345677788887754332 1223345679999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++||||++++|+||||||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|+
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 224 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGN 224 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999988767899999999999976 99999999985
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=346.10 Aligned_cols=192 Identities=22% Similarity=0.332 Sum_probs=167.2
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +.++++
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 689999999964 4599999999999999999999999999999999999999999999999998642 346899
Q ss_pred EcCcccccc-ccHhhhcCCC---CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHh
Q 000463 1348 IPQEPVLFE-GTVRSNIDPI---GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1348 IpQdp~LF~-gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1419 (1479)
+||++.+|. .|+++|+... .... ++++.++++..++.+..... ..+||||||||++|||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRY-----------IWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 999999887 5999999632 1122 34577888888887654433 246899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhh-cCEEEEEeC
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVDA 1477 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~ 1477 (1479)
+++|++|||||||++||+.+...+.+.|++.. .++|||+|||+++.+.. ||+|++|++
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~ 204 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSP 204 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999863 37999999999999876 999999984
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=323.09 Aligned_cols=163 Identities=28% Similarity=0.464 Sum_probs=150.1
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
|+++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|. +++++
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 5789999999644 45999999999999999999999999999999999999999999999973 68999
Q ss_pred EcCccccccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEE
Q 000463 1348 IPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLF 1427 (1479)
Q Consensus 1348 IpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILi 1427 (1479)
+||+|.++++|+++|+... ....||+|||||++||||++++|++++
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999632 135799999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhhcCEEEEEeCC
Q 000463 1428 MDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478 (1479)
Q Consensus 1428 LDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~~DrIlVL~~G 1478 (1479)
|||||++||.++.+.+.+.|++. ++|+|++||+++....||+|++|++|
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 99999999999999999999986 68999999999988779999999886
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=346.21 Aligned_cols=201 Identities=22% Similarity=0.307 Sum_probs=175.2
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC-----CccEEEEcCEecCCC--Chh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP-----SGGRIIIDGIDISLL--GLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p-----~~G~I~IDG~dI~~i--~l~ 1339 (1479)
.+.+++.+++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++| .+|+|.+||.++... ...
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4889999999964 3599999999999999999999999999999999999986 799999999998653 444
Q ss_pred hhhcceEEEcCccccccccHhhhcCCCC------CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHH
Q 000463 1340 DLRSRFGIIPQEPVLFEGTVRSNIDPIG------QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLL 1413 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1413 (1479)
.+|++++++||+|.+|..|+++|+.... ...++++.++++.+++.+.+... ..+...+||+|||||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-------LKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhh-------hhCCcccCCHHHHHHH
Confidence 6788999999999999999999997421 11235788899999987655432 2345568999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEe
Q 000463 1414 CLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVD 1476 (1479)
Q Consensus 1414 ~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~ 1476 (1479)
+|||||+++|+||+|||||++||+.+...+.+.|++..+++|+|+|||+++.+.+ ||||++|+
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~ 222 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFS 222 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999998777899999999999877 99999996
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=363.15 Aligned_cols=186 Identities=31% Similarity=0.468 Sum_probs=165.4
Q ss_pred cceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhh----hcceEEEcCccccccc-
Q 000463 1283 LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL----RSRFGIIPQEPVLFEG- 1357 (1479)
Q Consensus 1283 ~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L----R~~i~iIpQdp~LF~g- 1357 (1479)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.|+.+.+..++ |++++|+||++.+|..
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 48999999999999999999999999999999999999999999999999998877654 3579999999999975
Q ss_pred cHhhhcCCC---CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeC
Q 000463 1358 TVRSNIDPI---GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDE 1430 (1479)
Q Consensus 1358 TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDE 1430 (1479)
|+++|+... ...+ ++++.++++.++|.++....|. +||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~-----------~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD-----------ELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcc-----------cCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 999999631 1122 3567889999999877666553 689999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1431 ATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1431 aTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||++||+.+.+.+++.|++.. .++|+|+|||+++.+.. ||||++|++|+
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~ 242 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGE 242 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999864 47899999999999876 99999999985
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=335.98 Aligned_cols=198 Identities=49% Similarity=0.856 Sum_probs=176.3
Q ss_pred EEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-----------------
Q 000463 646 EVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG----------------- 708 (1479)
Q Consensus 646 ~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g----------------- 708 (1479)
.+.|++|.|+.. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 577999999643 5799999999999999999999999999999999999999999999865
Q ss_pred eEEEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCC
Q 000463 709 TTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDC 788 (1479)
Q Consensus 709 ~iayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 788 (1479)
.++|++|++.+++.|++||+.++.+.+.++.+++.+.+++.+.++..|.|+++.++.++.+||||||||++||||++.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 37899999998889999999987665555566778888888888888999999889999999999999999999999999
Q ss_pred CEEEEeCccCCCChhhHHHHHHH-HHhhh-cCCcEEEEEccCCcccccCCEEEEEeCCE
Q 000463 789 DIYLLDDVFSAVDAHTGSDIFKE-CVRGA-LKGKTIILVTHQVDFLHNVDLILVMREGM 845 (1479)
Q Consensus 789 ~illLDep~saLD~~~~~~i~~~-~~~~~-~~~~tvilvTH~~~~l~~~D~i~~l~~G~ 845 (1479)
+++||||||++||+.+.+.+.+. +++.. .+|+|+|++||+.+.+..+|++++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988873 45443 34899999999999988899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=346.83 Aligned_cols=203 Identities=24% Similarity=0.401 Sum_probs=174.8
Q ss_pred ccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCC-----ccEEEEcCEecCC--CCh
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS-----GGRIIIDGIDISL--LGL 1338 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~-----~G~I~IDG~dI~~--i~l 1338 (1479)
+.++++|++++|+. +.+|+|+||+|++||.+||+|++|||||||+++|.|+++|+ +|+|.+||.|++. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 46999999999964 35999999999999999999999999999999999999985 8999999999853 345
Q ss_pred hhhhcceEEEcCccccccccHhhhcCCC----CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHH
Q 000463 1339 HDLRSRFGIIPQEPVLFEGTVRSNIDPI----GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQR 1410 (1479)
Q Consensus 1339 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1410 (1479)
..+|+.++++||++.+|..|+++|+... +..+ ++++.++++.+++.+++..+ .......||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK-------IHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHHH
Confidence 5778999999999999999999999631 1112 34567788888887655422 2334568999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhh-cCEEEEEeC
Q 000463 1411 QLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVDA 1477 (1479)
Q Consensus 1411 Qrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~ 1477 (1479)
||++|||||+++|+||||||||++||.++...+.+.|++.. .++|+|+|||+++.+.. ||||++|++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~ 226 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKG 226 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEcc
Confidence 99999999999999999999999999999999999999853 48999999999999976 999999998
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=351.42 Aligned_cols=208 Identities=25% Similarity=0.412 Sum_probs=168.7
Q ss_pred cEEEEeeEEEecCCC--CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------
Q 000463 644 AVEVRDGVFSWDDEN--GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------- 708 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------- 708 (1479)
.|+++|++++|++.. ..++|+|+||+|++||+++|+|+||||||||+++|.|.++|++|+|.++|
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 378999999996432 13699999999999999999999999999999999999999999998853
Q ss_pred ------------------------eEEEEeccC--cCCCCcHHHHHhcCCC---CChhhHHHHHHHhchHHHHHhcccCC
Q 000463 709 ------------------------TTAYVAQTS--WIQNGTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGD 759 (1479)
Q Consensus 709 ------------------------~iayv~Q~~--~i~~~Tv~enI~fg~~---~~~~~~~~v~~~~~l~~dl~~l~~gd 759 (1479)
.++||+|+| .++..||+|||.|+.. .+++...+ + ..+-++.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~--~---~~~~l~~~gL~- 155 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKK--R---AAKYIELVGLD- 155 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHH--H---HHHHHHHcCCC-
Confidence 269999986 5677899999998742 12111111 1 11223333221
Q ss_pred ccccccCCCccchHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccc-cCCEE
Q 000463 760 QTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLH-NVDLI 838 (1479)
Q Consensus 760 ~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~-~~D~i 838 (1479)
....++++.+|||||||||+|||||+.+|+++||||||++||+...+.+.+.+.+...+|+|+|+|||+++++. .||+|
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv 235 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE
Confidence 11245678899999999999999999999999999999999999999988766555556999999999999875 59999
Q ss_pred EEEeCCEEEEecChHHHHh
Q 000463 839 LVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 839 ~~l~~G~i~~~g~~~~l~~ 857 (1479)
++|++|++++.|+++++..
T Consensus 236 ~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 236 IFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred EEEECCEEEEECCHHHHhc
Confidence 9999999999999988765
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=351.07 Aligned_cols=199 Identities=24% Similarity=0.436 Sum_probs=179.5
Q ss_pred ccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcce
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRF 1345 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1345 (1479)
..|+++||+.+|. ...+++|+|++|++||.+.++|||||||||++++|.||..|++|+|.+||.||..++++ ++.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 4699999999998 45699999999999999999999999999999999999999999999999999998887 5789
Q ss_pred EEEcCccccccc-cHhhhcCCC-C---CCCH----HHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHH
Q 000463 1346 GIIPQEPVLFEG-TVRSNIDPI-G---QYSD----EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLG 1416 (1479)
Q Consensus 1346 ~iIpQdp~LF~g-TIR~NLdp~-~---~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LA 1416 (1479)
++|+|+..||.- ||++|+... . ...+ +.+.++|+.++|.++-.+.|.. |||||+||++||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~q-----------LSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQ-----------LSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhh-----------hChHHHHHHHHH
Confidence 999999999966 999999632 1 1233 4789999999999998888754 699999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1417 RVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1417 RALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||..+|++|+||||-|+||.+-...+|.-|++.. .+.|.|.|||+-++.+. +|||.||++|+
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~ 214 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGR 214 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCc
Confidence 99999999999999999999999999998888765 37899999999988766 99999999996
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=337.00 Aligned_cols=193 Identities=28% Similarity=0.405 Sum_probs=166.0
Q ss_pred EEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCCh----hhhhcce
Q 000463 1270 LIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGL----HDLRSRF 1345 (1479)
Q Consensus 1270 ~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l----~~LR~~i 1345 (1479)
++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++. ...|+++
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4689999964 359999999999999999999999999999999999999999999999999775542 2457789
Q ss_pred EEEcCcccccc-ccHhhhcCCC---CC----CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHH
Q 000463 1346 GIIPQEPVLFE-GTVRSNIDPI---GQ----YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGR 1417 (1479)
Q Consensus 1346 ~iIpQdp~LF~-gTIR~NLdp~---~~----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1417 (1479)
++++|+|.+|. .|+++|+... .. ..++++.++++..++.+..... ..+||+|||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQK-----------IYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCC-----------hhhCCHHHHHHHHHHH
Confidence 99999999997 5999999631 11 1245678888888886554332 2469999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhhcCEEEEE
Q 000463 1418 VMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMDCDRVIVV 1475 (1479)
Q Consensus 1418 ALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~~DrIlVL 1475 (1479)
||+++|++|||||||++||+++.+.+.+.|++.. ++.|+|+++|+++.+..||+|++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999999864 378999999999988779999986
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=356.96 Aligned_cols=208 Identities=31% Similarity=0.440 Sum_probs=170.9
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-----------eEEE
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-----------TTAY 712 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-----------~iay 712 (1479)
.++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEE
Confidence 3789999999953 4699999999999999999999999999999999999999999999987 3899
Q ss_pred EeccCcCCC-CcHHHHHhcCCCCC----hhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcC
Q 000463 713 VAQTSWIQN-GTIEENILFGLPMN----RAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD 787 (1479)
Q Consensus 713 v~Q~~~i~~-~Tv~enI~fg~~~~----~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 787 (1479)
|+|++.++. .|++|||.|+.... .....+.. ....+-++.+... .....++.+|||||||||+|||||+.+
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~L~--~~~~~~~~~LSgGq~QRvalArAL~~~ 154 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIK--AKVTQLLEMVQLA--HLADRYPAQLSGGQKQRVALARALAVE 154 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHH--HHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 999998874 69999999985421 00001100 0112223333222 234567889999999999999999999
Q ss_pred CCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000463 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 788 ~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
|+++|||||||+||+.+++.+.+.+.+...+ |+|+|+||||++++.. ||+|++|++|++++.|+++++.+.
T Consensus 155 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 155 PQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999998766655544 8999999999998765 899999999999999999998764
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=341.18 Aligned_cols=207 Identities=29% Similarity=0.411 Sum_probs=168.2
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-----------eEEE
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-----------TTAY 712 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-----------~iay 712 (1479)
.++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~ 78 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGF 78 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEE
Confidence 3789999999953 5799999999999999999999999999999999999999999999987 3799
Q ss_pred EeccCcCC-CCcHHHHHhcCCCCChh----hHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcC
Q 000463 713 VAQTSWIQ-NGTIEENILFGLPMNRA----KYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD 787 (1479)
Q Consensus 713 v~Q~~~i~-~~Tv~enI~fg~~~~~~----~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 787 (1479)
++|+|.++ +.|++||+.++...... ...+..+ ...+.++.+.. ......++.+||||||||++||||++.+
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~la~al~~~ 154 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRA--KVHELLKLVQL--DWLADRYPAQLSGGQRQRVALARALAVE 154 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHH--HHHHHHHHcCC--hhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 99999877 46999999986432110 1111100 11222333322 2234567789999999999999999999
Q ss_pred CCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 788 ~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
|+++||||||++||+++.+.+.+.+.+...+ |+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 155 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 155 PKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 9999999999999999999998765554443 8999999999998765 89999999999999999888754
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=350.42 Aligned_cols=206 Identities=27% Similarity=0.403 Sum_probs=174.3
Q ss_pred CccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC-----CCccEEEEcCEecCCC--C
Q 000463 1265 HGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE-----PSGGRIIIDGIDISLL--G 1337 (1479)
Q Consensus 1265 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~-----p~~G~I~IDG~dI~~i--~ 1337 (1479)
...++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +
T Consensus 37 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 37 KPHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred ceEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 346899999999964 349999999999999999999999999999999999865 4999999999998643 3
Q ss_pred hhhhhcceEEEcCccccccccHhhhcCCC---CCC-C----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchH
Q 000463 1338 LHDLRSRFGIIPQEPVLFEGTVRSNIDPI---GQY-S----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQ 1409 (1479)
Q Consensus 1338 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~-s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1409 (1479)
...+|++++|+||+|.+|.+|+++|+... ... + ++++.++++..++.+.+. +.++ .....|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~----~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---DRLD----KNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---hHhh----CChhhCCHHH
Confidence 34678899999999999989999999631 111 1 245667788887754332 1222 3345799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1410 RQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1410 rQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||++|||||+++|++|||||||++||.++.+.+.+.|++..+++|||+++|+++.+.+ ||||++|++|+
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~ 258 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGV 258 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999987667899999999999876 99999999985
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=341.09 Aligned_cols=196 Identities=23% Similarity=0.437 Sum_probs=173.2
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
|+++|++++|.. + +|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++...+. .|+++++
T Consensus 1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 578999999964 3 8999999999999999999999999999999999999999999999999987654 3789999
Q ss_pred EcCcccccc-ccHhhhcCCC---CCC----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHh
Q 000463 1348 IPQEPVLFE-GTVRSNIDPI---GQY----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1348 IpQdp~LF~-gTIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1419 (1479)
+||++.+|. .|+++|+... ... .++++.++++.+++.+++...+ .+||+|||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHH
Confidence 999999985 6999999621 111 2356788899999987766554 36899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+++|++|+|||||++||..+.+.+.+.|++..+ ++|+|++||+++.+.+ ||+|++|++|+
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~ 207 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGK 207 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999998643 7999999999999987 99999999985
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=354.34 Aligned_cols=205 Identities=22% Similarity=0.330 Sum_probs=170.3
Q ss_pred cEEEEeeeeeecCCC--CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC----CCccEEEEcCEecCCCChhh
Q 000463 1267 NVDLIDLQVRYRSNT--PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE----PSGGRIIIDGIDISLLGLHD 1340 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~--~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~----p~~G~I~IDG~dI~~i~l~~ 1340 (1479)
-++++|++++|+... ..+|+||||+|++||.+||||+||||||||+++|.|+++ |++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 379999999997532 359999999999999999999999999999999999997 48999999999999988776
Q ss_pred hhc----ceEEEcCccc--ccc-ccHhhhc----CCCCCC----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCC
Q 000463 1341 LRS----RFGIIPQEPV--LFE-GTVRSNI----DPIGQY----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNW 1405 (1479)
Q Consensus 1341 LR~----~i~iIpQdp~--LF~-gTIR~NL----dp~~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1405 (1479)
+|+ +|++|||+|. ++. -|+.+|+ ...... .++++.++|++++|.+.... ......+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--------l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR--------LDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------HhCCchhC
Confidence 653 6999999995 443 2565544 322111 23567889999998653211 11234579
Q ss_pred CchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1406 SVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1406 SgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ 231 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQ 231 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999998753 7899999999999965 99999999995
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=359.71 Aligned_cols=199 Identities=24% Similarity=0.430 Sum_probs=175.1
Q ss_pred ccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcce
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRF 1345 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i 1345 (1479)
..++++|++++|.. ..+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++.+.+. .|+++
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999964 359999999999999999999999999999999999999999999999999987664 46789
Q ss_pred EEEcCccccccc-cHhhhcCCC-C--CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHH
Q 000463 1346 GIIPQEPVLFEG-TVRSNIDPI-G--QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGR 1417 (1479)
Q Consensus 1346 ~iIpQdp~LF~g-TIR~NLdp~-~--~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LAR 1417 (1479)
++++|++.+|.. |+++|+... . ..+ ++++.++++..++.++....|. +||||||||++|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~-----------~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH-----------QLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChh-----------hCCHHHHHHHHHHH
Confidence 999999999976 999999732 1 222 3467788899998877665553 58999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1418 VMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1418 ALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||+++|++|+||||||+||..+...+.+.|++.. .+.|+|+|||+++.+.. ||||+||++|+
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~ 227 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGK 227 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999988887764 36899999999999876 99999999996
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=343.76 Aligned_cols=201 Identities=22% Similarity=0.257 Sum_probs=169.2
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccC--CCCccEEEEcCEecCCCChhhh-hcc
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLV--EPSGGRIIIDGIDISLLGLHDL-RSR 1344 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~--~p~~G~I~IDG~dI~~i~l~~L-R~~ 1344 (1479)
|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.+||.++...+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 578999999963 35999999999999999999999999999999999994 7999999999999988877664 456
Q ss_pred eEEEcCccccccc-cHhhhcCCC----CC------CC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchH
Q 000463 1345 FGIIPQEPVLFEG-TVRSNIDPI----GQ------YS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQ 1409 (1479)
Q Consensus 1345 i~iIpQdp~LF~g-TIR~NLdp~----~~------~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ 1409 (1479)
++++||+|.+|.+ |+++|+... .. .+ ++++.++++..++.+.. ++..+. ..|||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G~ 149 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGGE 149 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHHH
Confidence 9999999999887 899998421 10 11 24567777777775321 122221 2499999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh--cCEEEEEeCCC
Q 000463 1410 RQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD--CDRVIVVDAGL 1479 (1479)
Q Consensus 1410 rQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~--~DrIlVL~~G~ 1479 (1479)
|||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|+
T Consensus 150 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~ 222 (243)
T TIGR01978 150 KKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGR 222 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCE
Confidence 999999999999999999999999999999999999999875 47899999999999986 79999999985
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=356.66 Aligned_cols=209 Identities=27% Similarity=0.431 Sum_probs=172.9
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCC--cEEEECCe-----------
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKIS--GKVKVCGT----------- 709 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~--G~i~~~g~----------- 709 (1479)
..++++|++++|++ ..+|+|+||++++||+++|+|||||||||||++|+|+.+|++ |+|.++|.
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 46899999999953 469999999999999999999999999999999999999999 99999873
Q ss_pred EEEEeccCcCC-CCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCC
Q 000463 710 TAYVAQTSWIQ-NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDC 788 (1479)
Q Consensus 710 iayv~Q~~~i~-~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 788 (1479)
++||+|++.++ ..||+|||.|+.........+..+ ...+-++.+... ....++..+|||||||||+|||||+.+|
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~--~v~~~l~~~gL~--~~~~~~~~~LSgGq~QRvaLARAL~~~P 156 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE--RVADALKLVGLG--DAAAHLPAQLSGGMQQRIAIARAIAIEP 156 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH--HHHHHHHhcCCC--chhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 79999999877 569999999875321100011110 122234443332 2346778899999999999999999999
Q ss_pred CEEEEeCccCCCChhhHHHHHHHHHhhhcC--CcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000463 789 DIYLLDDVFSAVDAHTGSDIFKECVRGALK--GKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 789 ~illLDep~saLD~~~~~~i~~~~~~~~~~--~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
+++|||||||+||+..++++.+.+.+...+ |+|+|+||||++++.. ||+|++|++|++++.|+++++.+.
T Consensus 157 ~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 157 DVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999998877665554 7999999999999765 999999999999999999999764
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=359.25 Aligned_cols=208 Identities=29% Similarity=0.416 Sum_probs=170.1
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-----------EEE
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-----------TAY 712 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-----------iay 712 (1479)
.++++|++++|+ ++++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|. ++|
T Consensus 3 ~l~i~~l~~~~~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 488999999995 246999999999999999999999999999999999999999999999873 899
Q ss_pred EeccCcCC-CCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEE
Q 000463 713 VAQTSWIQ-NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIY 791 (1479)
Q Consensus 713 v~Q~~~i~-~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~il 791 (1479)
++|++.++ +.||+|||.|+........++..+ ...+-++.+.. ......+..+|||||||||+|||||+.+|+++
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~--~~~~~l~~lgL--~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lL 155 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ--RVNQVAEVLQL--AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF 155 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH--HHHHHHHHcCC--hhhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99998876 569999999875321100011000 11222333322 22345677899999999999999999999999
Q ss_pred EEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000463 792 LLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 792 lLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
|||||||+||+..++.+.+.+.+...+ |+|+|+|||+++++.. ||+|++|++|++++.|+++++...
T Consensus 156 LLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 156 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999998766655444 8999999999998764 999999999999999999998754
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=350.32 Aligned_cols=209 Identities=24% Similarity=0.380 Sum_probs=169.6
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC------------eE
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------TT 710 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------~i 710 (1479)
..++++|+++.|+ +..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 6 ~~i~i~~l~k~~~---~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEEC---CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 4799999999995 35799999999999999999999999999999999999999999999987 38
Q ss_pred EEEeccCcCC-CCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCC
Q 000463 711 AYVAQTSWIQ-NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCD 789 (1479)
Q Consensus 711 ayv~Q~~~i~-~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 789 (1479)
||+||++.++ +.|++||+.|..........+..+ ...+-++.+... .....+..+||||||||++||||++++|+
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~aL~~~P~ 158 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARA--LVPPLLEFAKLE--NKADAKVGELSGGMKRRLTLARALVNDPD 158 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHcCCc--hHhcCchhhCCHHHHHHHHHHHHHhCCCC
Confidence 9999998876 579999998532211000011111 011222332221 12345667899999999999999999999
Q ss_pred EEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000463 790 IYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 790 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
+++|||||++||+.+++.+++.+.+...+|+|+|++||++++++. ||+|++|++|++++.|+++++.+.
T Consensus 159 lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 159 VLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999987665555568999999999999975 999999999999999999988643
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=339.09 Aligned_cols=203 Identities=31% Similarity=0.427 Sum_probs=161.3
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCc-----ccCCcEEEECC-----------
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEM-----HKISGKVKVCG----------- 708 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~-----~~~~G~i~~~g----------- 708 (1479)
|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|.. +|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 468999999953 47999999999999999999999999999999999999 99999999877
Q ss_pred ----eEEEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccC--CCccchHHHHHHHHHH
Q 000463 709 ----TTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGER--GINLSGGQKQRIQLAR 782 (1479)
Q Consensus 709 ----~iayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~--g~~LSGGQkqRv~LAR 782 (1479)
.++|++|++.+++.|++||+.++.........+..+ ....+-++.+... .....+ +.+||||||||++|||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~--~~~~~~~~~~~LSgG~~qrv~la~ 154 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD-ERVEEALRKAALW--DEVKDRLHALGLSGGQQQRLCLAR 154 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHH-HHHHHHHHHcCCC--hHHhccCCcccCCHHHHHHHHHHH
Confidence 278999999888889999998864321100000000 0011222222211 112233 5899999999999999
Q ss_pred HHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHH
Q 000463 783 AVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNA 854 (1479)
Q Consensus 783 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~ 854 (1479)
|++.+|+++||||||++||+.+++.+++.+.+...+ +|+|++||+++++.. ||++++|++|++++.|++++
T Consensus 155 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 155 ALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999998766555445 999999999998764 99999999999999887654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=340.48 Aligned_cols=207 Identities=23% Similarity=0.331 Sum_probs=168.6
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe--------------E
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT--------------T 710 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--------------i 710 (1479)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 1 l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFG---GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEEC---CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 46889999995 246999999999999999999999999999999999999999999998872 7
Q ss_pred EEEeccCcCCC-CcHHHHHhcCCCCChhh---------HHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHH
Q 000463 711 AYVAQTSWIQN-GTIEENILFGLPMNRAK---------YGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQL 780 (1479)
Q Consensus 711 ayv~Q~~~i~~-~Tv~enI~fg~~~~~~~---------~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 780 (1479)
+|++|++.++. .|++||+.++....... ..+.. .....+.++.+. .....+.+..+|||||||||+|
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~--l~~~~~~~~~~LSgG~~qrv~l 154 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREA-RERAEELLERVG--LADLADRPAGELSYGQQRRLEI 154 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHH-HHHHHHHHHHcC--ccchhhCChhhCCHHHHHHHHH
Confidence 99999988765 59999998864321000 00111 111223344442 2234567788999999999999
Q ss_pred HHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 781 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
|||++.+|+++||||||++||+.+++.+++.+.+...+|+|+|++||+++++.. ||++++|++|++++.|+++++.+
T Consensus 155 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 155 ARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 999999999999999999999999999987666554478999999999999865 89999999999999999887653
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=346.52 Aligned_cols=202 Identities=23% Similarity=0.396 Sum_probs=171.3
Q ss_pred cEEEEeeeeeecC-------CCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChh
Q 000463 1267 NVDLIDLQVRYRS-------NTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~-------~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~ 1339 (1479)
-|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 4899999999952 123599999999999999999999999999999999999999999999999999765666
Q ss_pred hhhcceEEEcCccc--cccc-cHhhhcCC---CC-C----CCHHHHHHHHHHcCch-HHHHhCcCCccccccCCCCCCCc
Q 000463 1340 DLRSRFGIIPQEPV--LFEG-TVRSNIDP---IG-Q----YSDEEIWKSLERCQLK-DVVAAKPDKLDSLVADSGDNWSV 1407 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~--LF~g-TIR~NLdp---~~-~----~sd~eI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLSg 1407 (1479)
..|++++++||+|. ++.. |+.+|+.. .+ . ..++++.++++.+++. +..... ..+||+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYY-----------PHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcC-----------chhcCH
Confidence 66778999999985 4443 78888742 11 1 1235688899999984 333222 246999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1408 GQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1408 GQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||||++|||||+++|+||||||||++||+++.+.+.+.|++..+ +.|||+|||+++.+.. ||||++|++|+
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~ 227 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGE 227 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999999999998643 7899999999999987 99999999985
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=354.47 Aligned_cols=205 Identities=27% Similarity=0.424 Sum_probs=170.9
Q ss_pred cEEEEeeeeeecC--CCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCC---ccEEEEcCEecCCCChhhh
Q 000463 1267 NVDLIDLQVRYRS--NTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS---GGRIIIDGIDISLLGLHDL 1341 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~--~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~---~G~I~IDG~dI~~i~l~~L 1341 (1479)
-++++|++++|+. +...+|+||||+|++||++||||+||||||||+++|.|+++|. +|+|.+||.|+..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 5899999999964 2346999999999999999999999999999999999999996 9999999999999987776
Q ss_pred h----cceEEEcCcc--cccc-ccHhhhcC----CCCCCCH----HHHHHHHHHcCchHHHHhCcCCccccccCCCCCCC
Q 000463 1342 R----SRFGIIPQEP--VLFE-GTVRSNID----PIGQYSD----EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWS 1406 (1479)
Q Consensus 1342 R----~~i~iIpQdp--~LF~-gTIR~NLd----p~~~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1406 (1479)
| ++|++||||| .++. -|+.+|+. .....+. +++.++|+.+++.+ +. ..+......||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~-------~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE-------AR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-------hH-HHhcCCcccCC
Confidence 4 4799999999 4554 37777662 2222232 34566777776642 11 11334456799
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1407 VGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1407 gGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ 239 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGR 239 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999988754 7899999999999976 99999999995
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=335.14 Aligned_cols=196 Identities=32% Similarity=0.442 Sum_probs=159.9
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-----------eEEEE
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-----------TTAYV 713 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-----------~iayv 713 (1479)
++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 468899999953 4799999999999999999999999999999999999999999999987 37999
Q ss_pred eccCcCC-CCcHHHHHhcCCCC---ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCC
Q 000463 714 AQTSWIQ-NGTIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCD 789 (1479)
Q Consensus 714 ~Q~~~i~-~~Tv~enI~fg~~~---~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 789 (1479)
+|++.++ +.|++||+.++... +....++. ..+-++.+.. .....+...+||||||||++||||++.+|+
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~l--~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 150 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR-----VRELLELVGL--EGLLNRYPHELSGGQQQRVALARALAREPS 150 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHcCC--hhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9998776 57999999876421 11111111 1122333322 223456678999999999999999999999
Q ss_pred EEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCccccc-CCEEEEEeCCEEEEec
Q 000463 790 IYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHN-VDLILVMREGMIVQSG 850 (1479)
Q Consensus 790 illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g 850 (1479)
++||||||++||+.+++.+++.+.+... .|+|+|++||+++++.. ||++++|++|++++.|
T Consensus 151 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 151 LLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999876655544 48999999999998765 8999999999998754
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=346.90 Aligned_cols=207 Identities=26% Similarity=0.410 Sum_probs=169.3
Q ss_pred cEEEEeeEEEecCCC--CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------
Q 000463 644 AVEVRDGVFSWDDEN--GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------- 708 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------- 708 (1479)
.++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999996322 24699999999999999999999999999999999999999999999887
Q ss_pred ----eEEEEeccC--cCCCCcHHHHHhcCCC---CChhhHHHHHHHhchHHHHHhcccCCcc-ccccCCCccchHHHHHH
Q 000463 709 ----TTAYVAQTS--WIQNGTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGDQT-EIGERGINLSGGQKQRI 778 (1479)
Q Consensus 709 ----~iayv~Q~~--~i~~~Tv~enI~fg~~---~~~~~~~~v~~~~~l~~dl~~l~~gd~t-~ig~~g~~LSGGQkqRv 778 (1479)
.+|||+|+| .++..|++|||.|+.. .+.....+. ..+-++.+ |..+ .....+.+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 269999997 5677899999998742 122111111 11223333 2222 23467889999999999
Q ss_pred HHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHH
Q 000463 779 QLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALL 856 (1479)
Q Consensus 779 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~ 856 (1479)
+|||||+.+|+++||||||++||+.+++.+.+.+.+... +|+|+|++||+++++. .||+|++|++|++++.|+++++.
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999876555544 4899999999999986 58999999999999999998876
Q ss_pred h
Q 000463 857 N 857 (1479)
Q Consensus 857 ~ 857 (1479)
+
T Consensus 235 ~ 235 (286)
T PRK13646 235 K 235 (286)
T ss_pred h
Confidence 4
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=345.75 Aligned_cols=203 Identities=30% Similarity=0.453 Sum_probs=166.8
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------eE
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------TT 710 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~i 710 (1479)
.++++|+++.|+. .+++|+|+||++++||+++|+|+||||||||+++|.|.++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 5899999999952 24699999999999999999999999999999999999999999999987 27
Q ss_pred EEEeccC--cCCCCcHHHHHhcCCC---CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHh
Q 000463 711 AYVAQTS--WIQNGTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVY 785 (1479)
Q Consensus 711 ayv~Q~~--~i~~~Tv~enI~fg~~---~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 785 (1479)
+|++|+| .++..|++||+.|+.. .+....++. ..+-++.+... ........+|||||||||+|||||+
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~L~--~~~~~~~~~LSgG~~qrv~laraL~ 154 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERR-----VEEALKAVRMW--DFRDKPPYHLSYGQKKRVAIAGVLA 154 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHCCCH--HHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999998 5778899999998742 111111111 11222222221 1234567799999999999999999
Q ss_pred cCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHH
Q 000463 786 QDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNAL 855 (1479)
Q Consensus 786 ~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l 855 (1479)
.+|+++||||||++||+.+++.+++.+.+...+|+|+|++||+++++. .||+|++|++|++++.|+++++
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 155 MDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999998766555456899999999999985 5999999999999999998654
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=353.05 Aligned_cols=186 Identities=28% Similarity=0.483 Sum_probs=163.6
Q ss_pred CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCccccccc-cHh
Q 000463 1282 PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEG-TVR 1360 (1479)
Q Consensus 1282 ~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~g-TIR 1360 (1479)
..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|++++++||++.+|.+ |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 359999999999999999999999999999999999999999999999999976 345678899999999999976 999
Q ss_pred hhcCCCC---CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCC
Q 000463 1361 SNIDPIG---QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATA 1433 (1479)
Q Consensus 1361 ~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs 1433 (1479)
+|+.... ..+ ++++.++++.+++.+..... + .+||||||||++|||||+++|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRP-------V----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCc-------h----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9996421 122 34578888998886544332 2 4699999999999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1434 SVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1434 ~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+||+.+.+.+.+.|++.. +++|||++||+++.+.+ ||||++|++|+
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGR 201 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999864 47899999999999987 99999999995
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=354.56 Aligned_cols=207 Identities=27% Similarity=0.401 Sum_probs=170.7
Q ss_pred EEEEeeEEEecCCC-CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC---------------
Q 000463 645 VEVRDGVFSWDDEN-GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------------- 708 (1479)
Q Consensus 645 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------- 708 (1479)
|+++|++++|+... ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 35799999999999999999999999999999999999999999999987
Q ss_pred -eEEEEeccCcCCC-CcHHHHHhcCCCC---ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHH
Q 000463 709 -TTAYVAQTSWIQN-GTIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARA 783 (1479)
Q Consensus 709 -~iayv~Q~~~i~~-~Tv~enI~fg~~~---~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 783 (1479)
.++|++|++.++. .|++||+.++... +....++ ...+.++.+.. .......+.+|||||||||+||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~gL--~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELVGL--SDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCC--chhhhCChhhCCHHHHHHHHHHHH
Confidence 2899999988764 7999999886432 1111111 11223333322 223456778999999999999999
Q ss_pred HhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000463 784 VYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 784 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
++.+|+++||||||++||+.+++.+++.+.+...+ |+|+|++||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999998766655443 8999999999999875 999999999999999999988754
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=343.96 Aligned_cols=204 Identities=26% Similarity=0.424 Sum_probs=171.0
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCC-----ccEEEEcCEecCC--CChh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS-----GGRIIIDGIDISL--LGLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~-----~G~I~IDG~dI~~--i~l~ 1339 (1479)
-++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|. +|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 3789999999963 35999999999999999999999999999999999999874 8999999999875 3455
Q ss_pred hhhcceEEEcCccccccc-cHhhhcCCC---CC-CCHHH----HHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHH
Q 000463 1340 DLRSRFGIIPQEPVLFEG-TVRSNIDPI---GQ-YSDEE----IWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQR 1410 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~LF~g-TIR~NLdp~---~~-~sd~e----I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1410 (1479)
.+|++++++||+|.+|.+ |+++|+... .. ..+++ +.+.++..++.+.+ +..++.+ ..+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKTP----ATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcCC----cccCCHHHH
Confidence 778899999999999985 999999521 11 12333 33344555554332 2233433 457999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1411 QLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1411 Qrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||++||||++++|+||||||||++||..+.+.+.+.|++..+++|+|+++|+++.+.+ ||||++|++|+
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 224 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGD 224 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999987677999999999999987 99999999985
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=335.55 Aligned_cols=201 Identities=35% Similarity=0.461 Sum_probs=162.2
Q ss_pred EEEEeeEEEecCCC-CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--------eEEEEec
Q 000463 645 VEVRDGVFSWDDEN-GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------TTAYVAQ 715 (1479)
Q Consensus 645 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------~iayv~Q 715 (1479)
++++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|..+|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46899999996321 14799999999999999999999999999999999999999999999987 4799999
Q ss_pred cCcCCC-CcHHHHHhcCCCC---ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEE
Q 000463 716 TSWIQN-GTIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIY 791 (1479)
Q Consensus 716 ~~~i~~-~Tv~enI~fg~~~---~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~il 791 (1479)
++.++. .|++||+.++... ......+ ...+.++.+.. ......+..+||||||||++||||++.+|+++
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrl~la~al~~~p~ll 153 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARE-----RAEELLELVGL--SGFENAYPHQLSGGMRQRVALARALAVDPDVL 153 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCC--hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 988765 7999999875321 1111111 11222333322 22345567899999999999999999999999
Q ss_pred EEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCccccc-CCEEEEEe--CCEEEEecCh
Q 000463 792 LLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHN-VDLILVMR--EGMIVQSGRY 852 (1479)
Q Consensus 792 lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~-~D~i~~l~--~G~i~~~g~~ 852 (1479)
||||||++||+.+++.+++.+.+... .|+|+|++||+++++.. ||++++|+ +|++++.++.
T Consensus 154 lLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 154 LLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 99999999999999999876665543 48999999999998764 89999999 7999987764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=343.29 Aligned_cols=199 Identities=22% Similarity=0.335 Sum_probs=173.6
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCC--------ccEEEEcCEecCCCChh
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS--------GGRIIIDGIDISLLGLH 1339 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~--------~G~I~IDG~dI~~i~l~ 1339 (1479)
++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 689999999964 35999999999999999999999999999999999999998 99999999999888888
Q ss_pred hhhcceEEEcCccc-cccccHhhhcCCCC--------CC---CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCc
Q 000463 1340 DLRSRFGIIPQEPV-LFEGTVRSNIDPIG--------QY---SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSV 1407 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~-LF~gTIR~NLdp~~--------~~---sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSg 1407 (1479)
.+|+.++++||++. +|..|+++|+.... .. .++.++++++..++.+... .....|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVG-----------RDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCH
Confidence 88889999999986 67889999995321 11 2345778888888765432 23357999
Q ss_pred hHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEE
Q 000463 1408 GQRQLLCLGRVML---------KHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVV 1475 (1479)
Q Consensus 1408 GQrQrl~LARALL---------r~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL 1475 (1479)
|||||++|||||+ .+|++|||||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+.+ ||+|++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 59999999999999999999999999998653 6899999999999975 9999999
Q ss_pred eCCC
Q 000463 1476 DAGL 1479 (1479)
Q Consensus 1476 ~~G~ 1479 (1479)
++|+
T Consensus 229 ~~G~ 232 (272)
T PRK13547 229 ADGA 232 (272)
T ss_pred ECCe
Confidence 9985
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=335.61 Aligned_cols=201 Identities=21% Similarity=0.365 Sum_probs=163.4
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC------------eEEE
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------TTAY 712 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------~iay 712 (1479)
|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 478999999952 4699999999999999999999999999999999999999999999987 3799
Q ss_pred EeccCcCCC-CcHHHHHhcCCCC---ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCC
Q 000463 713 VAQTSWIQN-GTIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDC 788 (1479)
Q Consensus 713 v~Q~~~i~~-~Tv~enI~fg~~~---~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 788 (1479)
++|++.++. .|++||+.++... +....++ ...+-++.+... .....+..+||||||||++||||++.+|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~--~~~~~~~~~LS~G~~qr~~la~al~~~p 150 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRE-----RIDELLDFVGLL--EAADRLVKTYSGGMRRRLEIARSLVHRP 150 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCH--HHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999987664 6999999875321 1111111 011223333222 1234567799999999999999999999
Q ss_pred CEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHH
Q 000463 789 DIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNAL 855 (1479)
Q Consensus 789 ~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l 855 (1479)
+++||||||++||+++.+.+.+.+.+...+ |+|+|++||+++++.. ||++++|++|++++.|+++++
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 151 EVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999998766655554 8999999999999875 899999999999998887653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=334.53 Aligned_cols=204 Identities=27% Similarity=0.445 Sum_probs=172.9
Q ss_pred CccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------
Q 000463 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------- 708 (1479)
Q Consensus 642 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------- 708 (1479)
...++++|+++.|++..+.++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4579999999999643334699999999999999999999999999999999999999999999987
Q ss_pred eEEEEeccCcCCCCcHHHHHhcCCCCC-hhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcC
Q 000463 709 TTAYVAQTSWIQNGTIEENILFGLPMN-RAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD 787 (1479)
Q Consensus 709 ~iayv~Q~~~i~~~Tv~enI~fg~~~~-~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 787 (1479)
.++|++|++.++..|++||+.++.... .....+..+...+.+.++.++.|..+.+++++.+|||||||||+||||++.+
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 279999999988899999999875421 1111222233345566777776767778889999999999999999999999
Q ss_pred CCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEE
Q 000463 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMI 846 (1479)
Q Consensus 788 ~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i 846 (1479)
|+++||||||++||+++.+.+.+.+.+ +.+++|+|++||+++++..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYD-WPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHH-HcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999998865554 3457899999999999878999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=332.64 Aligned_cols=189 Identities=28% Similarity=0.466 Sum_probs=156.3
Q ss_pred EEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC----------eEEEEec
Q 000463 646 EVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG----------TTAYVAQ 715 (1479)
Q Consensus 646 ~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g----------~iayv~Q 715 (1479)
+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++| .++|++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q 78 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQ 78 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEec
Confidence 367899999531 4799999999999999999999999999999999999999999999987 3799999
Q ss_pred cC--cCCCCcHHHHHhcCCCCCh---hhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCE
Q 000463 716 TS--WIQNGTIEENILFGLPMNR---AKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDI 790 (1479)
Q Consensus 716 ~~--~i~~~Tv~enI~fg~~~~~---~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 790 (1479)
++ .+++.|++||+.++.+... ++..+. ++.+...+ .......+||||||||++||||++.+|++
T Consensus 79 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------l~~~~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 79 DVDYQLFTDSVREELLLGLKELDAGNEQAETV---------LKDLDLYA--LKERHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred ChhhhhhhccHHHHHhhhhhhcCccHHHHHHH---------HHHcCCch--hcCCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 97 4567899999988643211 122222 23322221 23456779999999999999999999999
Q ss_pred EEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEE
Q 000463 791 YLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIV 847 (1479)
Q Consensus 791 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~ 847 (1479)
+||||||++||+.+.+.+.+.+.+...+|+|+|++||+++.+.. ||++++|++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999987665554568999999999999875 8999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=341.94 Aligned_cols=205 Identities=28% Similarity=0.396 Sum_probs=173.8
Q ss_pred ccEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcC------EecCCCChh
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDG------IDISLLGLH 1339 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG------~dI~~i~l~ 1339 (1479)
..++++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| .++.+.+..
T Consensus 9 ~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 9 DVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 35999999999964 4599999999999999999999999999999999999999986666554 677777777
Q ss_pred hhhcceEEEcCccccccc-cHhhhcCCC----CCCCH----HHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHH
Q 000463 1340 DLRSRFGIIPQEPVLFEG-TVRSNIDPI----GQYSD----EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQR 1410 (1479)
Q Consensus 1340 ~LR~~i~iIpQdp~LF~g-TIR~NLdp~----~~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1410 (1479)
.+|++++++||+|.+|.+ |+++|+... +...+ +.+.++++..++.+.+.. .....+..||+|||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD-------RLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchh-------hhcCCcccCCHHHH
Confidence 889999999999999976 999999731 11122 335677788887653311 12234557999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1411 QLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1411 Qrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||++||||++++|++|+|||||++||..+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|+
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~ 229 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGE 229 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999988778999999999999965 99999999985
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=330.22 Aligned_cols=185 Identities=24% Similarity=0.309 Sum_probs=157.7
Q ss_pred cEEEEeeeeeecCC--CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC---CCccEEEEcCEecCCCChhhh
Q 000463 1267 NVDLIDLQVRYRSN--TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE---PSGGRIIIDGIDISLLGLHDL 1341 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~---p~~G~I~IDG~dI~~i~l~~L 1341 (1479)
.+.++|++|.|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 47899999999753 4579999999999999999999999999999999999999 89999999999998764 457
Q ss_pred hcceEEEcCccccccc-cHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhc
Q 000463 1342 RSRFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVML 1420 (1479)
Q Consensus 1342 R~~i~iIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALL 1420 (1479)
|++++++||++.+|.+ |+++|+..... +. .+ +....||+|||||++|||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~---------~~--------------~~----~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR---------CK--------------GN----EFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh---------hc--------------cc----cchhhCCHHHHHHHHHHHHHh
Confidence 8899999999988875 99999963211 00 12 223469999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEE-ccChhhhhh-cCEEEEEeCCC
Q 000463 1421 KHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISI-AHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1421 r~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~I-AHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
++|+||+|||||++||+++.+.+.+.|++..+ ++|+|++ +|+.+.+.+ ||+|++|++|+
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~ 197 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGR 197 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCE
Confidence 99999999999999999999999999998754 4676665 455677755 99999999996
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=334.74 Aligned_cols=194 Identities=25% Similarity=0.412 Sum_probs=157.0
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe---------------
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT--------------- 709 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--------------- 709 (1479)
++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999532 246999999999999999999999999999999999999999999999872
Q ss_pred -EEEEeccCcCCC-CcHHHHHhcCCCC---ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHH
Q 000463 710 -TAYVAQTSWIQN-GTIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAV 784 (1479)
Q Consensus 710 -iayv~Q~~~i~~-~Tv~enI~fg~~~---~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 784 (1479)
++|++|++.++. .|++||+.++... .....++ ...+.++.+... ........+|||||||||+||||+
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~laral 153 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANE-----RVSAALEKVGLE--GKAHALPMQLSGGEQQRVAIARAI 153 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHH
Confidence 699999988764 6999999876321 1111111 111222333221 223456679999999999999999
Q ss_pred hcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEE
Q 000463 785 YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMI 846 (1479)
Q Consensus 785 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i 846 (1479)
+.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++++.. ||++++|++|++
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999987665544568999999999999875 899999999975
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=328.07 Aligned_cols=189 Identities=27% Similarity=0.401 Sum_probs=162.5
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------e
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------T 709 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~ 709 (1479)
..++++|++++|+.. ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 468999999999642 24799999999999999999999999999999999999999999999987 3
Q ss_pred EEEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCC
Q 000463 710 TAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCD 789 (1479)
Q Consensus 710 iayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 789 (1479)
++|++|+|.++++|++||+.+...++. +++.++. + +++++.+||||||||++||||++.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~---~~~~~~l------~---------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSD---EEIYGAL------R---------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCH---HHHHHHh------h---------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 899999999988999999976543321 2222211 1 346788999999999999999999999
Q ss_pred EEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecC
Q 000463 790 IYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGR 851 (1479)
Q Consensus 790 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~ 851 (1479)
++||||||++||+.+.+.+.+.+.+. .+|+|+|++||+++.+..+|++++|++|++.+.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREE-FTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999888655544 46899999999999987799999999999988775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=336.23 Aligned_cols=204 Identities=26% Similarity=0.394 Sum_probs=167.9
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------eE
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------TT 710 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~i 710 (1479)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSF---GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 478999999995 24699999999999999999999999999999999999999999999987 27
Q ss_pred EEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCE
Q 000463 711 AYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDI 790 (1479)
Q Consensus 711 ayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 790 (1479)
+|++|++.++..|++||+.++.........+ ..+-++.+... .....+.+.+||||||||++||||++.+|++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~------~~~~l~~~~l~-~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 152 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVD------VEYYLSIVGLN-KEYATRDVKNLSGGEAQRVSIARTLANNPEV 152 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHH------HHHHHHHcCCC-HHHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999888889999998864322110011 11122222221 0123456789999999999999999999999
Q ss_pred EEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 791 YLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 791 llLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
+||||||++||+.+.+.+.+.+.+... .|+|+|++||+++++.. ||+|++|++|++++.|+++++..
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 153 LLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 999999999999999988876655444 38999999999999875 89999999999999999988765
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=342.53 Aligned_cols=204 Identities=32% Similarity=0.476 Sum_probs=168.3
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe--------------E
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT--------------T 710 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--------------i 710 (1479)
++++|++++|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 689999999953 346999999999999999999999999999999999999999999998872 7
Q ss_pred EEEeccCc--CCCCcHHHHHhcCCCC---ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHh
Q 000463 711 AYVAQTSW--IQNGTIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVY 785 (1479)
Q Consensus 711 ayv~Q~~~--i~~~Tv~enI~fg~~~---~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 785 (1479)
+|++|+|. +++.|++|||.++... +.....+. ..+-++.+.. .......+.+||||||||++||||++
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~gl--~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKR-----VDRALAEIGL--EKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHCCC--HHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999986 5678999999886421 11111111 1122233322 22345677899999999999999999
Q ss_pred cCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHh
Q 000463 786 QDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 786 ~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
.+|+++||||||++||+.++..+++.+.+...+|+|+|++||+++.++.||+|++|++|++++.|+++++..
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999998766555456899999999999988899999999999999999888754
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=338.50 Aligned_cols=206 Identities=32% Similarity=0.423 Sum_probs=165.2
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe---------------
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT--------------- 709 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--------------- 709 (1479)
++++|++++|+. ++++|+|+||++++||+++|+||||||||||+++|+|..+|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 678999999951 346999999999999999999999999999999999999999999999872
Q ss_pred -EEEEeccCcCCC-CcHHHHHhcCCCCChh-------hHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHH
Q 000463 710 -TAYVAQTSWIQN-GTIEENILFGLPMNRA-------KYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQL 780 (1479)
Q Consensus 710 -iayv~Q~~~i~~-~Tv~enI~fg~~~~~~-------~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 780 (1479)
++|++|++.++. .|++||+.++...... .+.+. ......+-++.+. ........+.+||||||||++|
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~--l~~~~~~~~~~LSgG~~qrv~l 156 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEE-DKERALSALERVG--LADKAYQRADQLSGGQQQRVAI 156 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHH-HHHHHHHHHHHcC--cHhhhcCCcccCCHHHHHHHHH
Confidence 799999987764 7999999876421000 00000 0011122233332 2223456778999999999999
Q ss_pred HHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHH
Q 000463 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNAL 855 (1479)
Q Consensus 781 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l 855 (1479)
|||++.+|+++||||||++||+.+.+.+.+.+.+... .|+|+|++||+++++. .||++++|++|++++.|+++++
T Consensus 157 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 157 ARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 9999999999999999999999999999876655444 3899999999999986 4899999999999999998775
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=300.81 Aligned_cols=195 Identities=28% Similarity=0.473 Sum_probs=174.3
Q ss_pred eeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCcccc
Q 000463 1275 VRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVL 1354 (1479)
Q Consensus 1275 ~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~L 1354 (1479)
.+|.....++|+|+||++.+||.++|.||||||||||++.+.-+..|++|.++..|.|+++++++.+|++++|+.|.|.|
T Consensus 9 ~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paL 88 (223)
T COG4619 9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPAL 88 (223)
T ss_pred HHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccc
Confidence 45666666799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHhhhcC-CC----CCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEe
Q 000463 1355 FEGTVRSNID-PI----GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMD 1429 (1479)
Q Consensus 1355 F~gTIR~NLd-p~----~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLD 1429 (1479)
|.+||.+|+- |+ ...+...-.+.|+++++.+.+-.+ +-.+||||||||++|+|-|---|+||+||
T Consensus 89 fg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k----------~it~lSGGE~QriAliR~Lq~~P~ILLLD 158 (223)
T COG4619 89 FGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTK----------NITELSGGEKQRIALIRNLQFMPKILLLD 158 (223)
T ss_pred cccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcc----------hhhhccchHHHHHHHHHHhhcCCceEEec
Confidence 9999999995 43 234556667778888887765333 34579999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhh-hhhcCEEEEEeCCC
Q 000463 1430 EATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPT-VMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1430 EaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~t-i~~~DrIlVL~~G~ 1479 (1479)
|+||+||..+.+.|.+.|.+++ ++..++.|||+-+. +..+||++-+..|+
T Consensus 159 E~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~ 211 (223)
T COG4619 159 EITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGH 211 (223)
T ss_pred CchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCc
Confidence 9999999999999999999988 46789999999988 77799999998874
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=335.21 Aligned_cols=207 Identities=21% Similarity=0.371 Sum_probs=169.1
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe------------EEE
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------TAY 712 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------iay 712 (1479)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|..+|++|+|.++|. ++|
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYG---ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 68899999995 357999999999999999999999999999999999999999999999872 799
Q ss_pred EeccCcC-CCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEE
Q 000463 713 VAQTSWI-QNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIY 791 (1479)
Q Consensus 713 v~Q~~~i-~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~il 791 (1479)
++|++.+ +..|++||+.++.........+.. ....+-++.+ |.....++++.+||||||||++||||++.+|+++
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~--~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 154 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR--ERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRPALL 154 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH--HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999877 578999999875321110001100 0112223333 2223456778899999999999999999999999
Q ss_pred EEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhc
Q 000463 792 LLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 792 lLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
||||||++||+.+.+.+.+.+.+... +|+|+|++||+++++..||++++|++|++++.|+++++.+.
T Consensus 155 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 155 LLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999876655543 58999999999999888999999999999999998887653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=330.27 Aligned_cols=192 Identities=22% Similarity=0.363 Sum_probs=159.6
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-----------eEEEE
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-----------TTAYV 713 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-----------~iayv 713 (1479)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~---~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYG---KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEEC---CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 46899999995 34799999999999999999999999999999999999999999999987 37899
Q ss_pred eccCcCC-CCcHHHHHhcCCCC---ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCC
Q 000463 714 AQTSWIQ-NGTIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCD 789 (1479)
Q Consensus 714 ~Q~~~i~-~~Tv~enI~fg~~~---~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 789 (1479)
+|++.++ +.|++||+.++... ++++.++.++..++. ....+++.+|||||||||+||||++.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLK-----------DSAKKKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH-----------HHHhhhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9998766 67999999875321 122222222222222 12345678999999999999999999999
Q ss_pred EEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEec
Q 000463 790 IYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSG 850 (1479)
Q Consensus 790 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g 850 (1479)
++||||||++||+.+.+.+++.+.+...+|+|+|++||+++++.. ||++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999987665544468999999999999875 8999999999998754
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=341.12 Aligned_cols=200 Identities=21% Similarity=0.359 Sum_probs=168.5
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCC----CccEEEEcCEecCCCChhhhh
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP----SGGRIIIDGIDISLLGLHDLR 1342 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p----~~G~I~IDG~dI~~i~l~~LR 1342 (1479)
.++++|++++| + .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.+++.. +..+
T Consensus 4 ~l~~~~l~~~~--~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA--A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe--c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 58999999999 2 3599999999999999999999999999999999999999 999999999998632 2234
Q ss_pred cceEEEcCccc-ccc--ccHhhhcCC----CC-CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHH
Q 000463 1343 SRFGIIPQEPV-LFE--GTVRSNIDP----IG-QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLC 1414 (1479)
Q Consensus 1343 ~~i~iIpQdp~-LF~--gTIR~NLdp----~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~ 1414 (1479)
++++++||+|. .|. .|+.+|+.. .+ ...+++++++++.+++.+.. +.+......||+|||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA--------RVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChh--------hhhhcCCcccCHHHHHHHH
Confidence 67999999985 443 477777531 11 23456789999999886531 1223344579999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1415 LGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1415 LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|||||+++|+||||||||++||..+.+.+.+.|++..+ ++|||+|+|+++.+.+ ||||++|++|+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~ 218 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGR 218 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999998753 7899999999999976 99999999985
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=340.12 Aligned_cols=206 Identities=27% Similarity=0.400 Sum_probs=166.7
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcc-----cCCcEEEECC---------
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH-----KISGKVKVCG--------- 708 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~i~~~g--------- 708 (1479)
..++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 46899999999952 469999999999999999999999999999999999864 5899999876
Q ss_pred ------eEEEEeccCcCCCCcHHHHHhcCCCC----ChhhHHHHHHHhchHHHHHhcccCC--ccccccCCCccchHHHH
Q 000463 709 ------TTAYVAQTSWIQNGTIEENILFGLPM----NRAKYGEVVRVCCLEKDLEMMEYGD--QTEIGERGINLSGGQKQ 776 (1479)
Q Consensus 709 ------~iayv~Q~~~i~~~Tv~enI~fg~~~----~~~~~~~v~~~~~l~~dl~~l~~gd--~t~ig~~g~~LSGGQkq 776 (1479)
.++|++|++.+++.|++||+.++... ..+..++. ....++.+...+ ....++.+.+|||||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAER-----VERSLRHAALWDEVKDRLHESALGLSGGQQQ 156 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHH-----HHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 27999999988888999999886321 11111111 111122221111 12345678899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHH
Q 000463 777 RIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNAL 855 (1479)
Q Consensus 777 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l 855 (1479)
||+||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++++.. ||++++|++|++++.|+++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL-KARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999988765544 457999999999999865 999999999999999999887
Q ss_pred Hh
Q 000463 856 LN 857 (1479)
Q Consensus 856 ~~ 857 (1479)
.+
T Consensus 236 ~~ 237 (253)
T PRK14242 236 FT 237 (253)
T ss_pred Hc
Confidence 64
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=334.52 Aligned_cols=198 Identities=31% Similarity=0.407 Sum_probs=158.6
Q ss_pred EEEEeeEEEecCCC-CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC---------------
Q 000463 645 VEVRDGVFSWDDEN-GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------------- 708 (1479)
Q Consensus 645 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------- 708 (1479)
++++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996321 14799999999999999999999999999999999999999999998876
Q ss_pred --eEEEEeccCcCCC-CcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHh
Q 000463 709 --TTAYVAQTSWIQN-GTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVY 785 (1479)
Q Consensus 709 --~iayv~Q~~~i~~-~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 785 (1479)
.++|++|++.++. .|++||+.++.........+. .....+.++.+. .......++.+|||||||||+||||++
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~--~~~~~~~l~~~~--l~~~~~~~~~~LS~G~~qrv~la~al~ 156 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER--RERAEELLERVG--LGDRLNHYPSELSGGQQQRVAIARALA 156 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH--HHHHHHHHHHcC--CchhhhcChhhcCHHHHHHHHHHHHHc
Confidence 3799999988775 599999998643211000000 011222333332 223345677899999999999999999
Q ss_pred cCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCcccccCCEEEEEeCCEE
Q 000463 786 QDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHNVDLILVMREGMI 846 (1479)
Q Consensus 786 ~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~~D~i~~l~~G~i 846 (1479)
.+|+++||||||++||+.+++.+.+.+.+... +|+|+|++||+++++..||++++|++|++
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 157 NDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999876655544 48999999999998878999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=335.53 Aligned_cols=198 Identities=21% Similarity=0.368 Sum_probs=164.8
Q ss_pred EEEEeeeeeecCC--CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC---CCccEEEEcCEecCCCChhhhh
Q 000463 1268 VDLIDLQVRYRSN--TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE---PSGGRIIIDGIDISLLGLHDLR 1342 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~---p~~G~I~IDG~dI~~i~l~~LR 1342 (1479)
++|+||+++|+.. .+++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++. ....|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5799999999765 3679999999999999999999999999999999999999 99999999999875 34678
Q ss_pred cceEEEcCccccccc-cHhhhcCCC---C--CCCHH-----HHHH-HHHHcCchHHHHhCcCCccccccCCCCCCCchHH
Q 000463 1343 SRFGIIPQEPVLFEG-TVRSNIDPI---G--QYSDE-----EIWK-SLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQR 1410 (1479)
Q Consensus 1343 ~~i~iIpQdp~LF~g-TIR~NLdp~---~--~~sd~-----eI~~-aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQr 1410 (1479)
++++++||++.+|.+ |+++|+... . ...++ .+.+ .++..++.+. ......+||+|||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRI-----------GGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhh-----------hcccccCcCHHHH
Confidence 899999999999988 999999631 1 11111 1222 3444444322 2233457999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccCh-hhhhh-cCEEEEEeCCC
Q 000463 1411 QLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRI-PTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1411 Qrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl-~ti~~-~DrIlVL~~G~ 1479 (1479)
||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|+|+++|++ +.+.. ||+|++|++|+
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~ 221 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGE 221 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCE
Confidence 99999999999999999999999999999999999999864 478999999998 46654 99999999996
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=342.32 Aligned_cols=208 Identities=27% Similarity=0.430 Sum_probs=170.4
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-------------
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------- 709 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------- 709 (1479)
..++++|+++.|+. ..+++|+|+||+|++||+++|+|+||||||||+++|+|..+|++|+|.++|.
T Consensus 4 ~~l~~~~l~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 4 EIIRVEHISFRYPD-AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred ceEEEEEEEEEeCC-CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 36899999999953 2346999999999999999999999999999999999999999999999883
Q ss_pred EEEEeccC--cCCCCcHHHHHhcCCCC---ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHH
Q 000463 710 TAYVAQTS--WIQNGTIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAV 784 (1479)
Q Consensus 710 iayv~Q~~--~i~~~Tv~enI~fg~~~---~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 784 (1479)
++|++|++ .+++.|++|||.++... ..+..++ ...+-++.+.. ...+.....+||||||||++||||+
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~gL--~~~~~~~~~~LS~G~~qrv~laral 155 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVE-----RVDQALRQVGM--EDFLNREPHRLSGGQKQRVAIAGVL 155 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHH-----HHHHHHHHcCC--hhhhhCCcccCCHHHHHHHHHHHHH
Confidence 79999998 46678999999986321 1111111 11122222221 1234566779999999999999999
Q ss_pred hcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhc
Q 000463 785 YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 785 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
+.+|+++||||||++||+.+++.+++.+.+...+ |+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 156 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 156 ALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999998766555544 8999999999999888999999999999999998887653
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=333.92 Aligned_cols=195 Identities=27% Similarity=0.456 Sum_probs=170.9
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... . ++++++
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~-~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---D-LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---c-cccEEE
Confidence 478999999974 3599999999999999999999999999999999999999999999999987532 2 357999
Q ss_pred EcCcccccc-ccHhhhcCC---CCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCC
Q 000463 1348 IPQEPVLFE-GTVRSNIDP---IGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHS 1423 (1479)
Q Consensus 1348 IpQdp~LF~-gTIR~NLdp---~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1423 (1479)
+||++.+|. .|+++|+.. ....+++++.++++..++.+.....+ .+||+|||||++||||++++|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKA-----------KQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhH-----------hhCCHHHHHHHHHHHHHhcCC
Confidence 999998886 599999963 12345678899999999987654332 368999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1424 RLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1424 ~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
++|+|||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||||++|++|+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 201 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGV 201 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCE
Confidence 9999999999999999999999999864 47899999999999865 99999999985
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=345.06 Aligned_cols=208 Identities=24% Similarity=0.393 Sum_probs=167.6
Q ss_pred cEEEEeeEEEecCCC--CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe------------
Q 000463 644 AVEVRDGVFSWDDEN--GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------ 709 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------ 709 (1479)
.|+++|+++.|++.. .+++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999996321 246999999999999999999999999999999999999999999999873
Q ss_pred -----EEEEeccC--cCCCCcHHHHHhcCCC---CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHH
Q 000463 710 -----TAYVAQTS--WIQNGTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQ 779 (1479)
Q Consensus 710 -----iayv~Q~~--~i~~~Tv~enI~fg~~---~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 779 (1479)
++|++|+| .+++.|++|||.++.. ...+...+ + ..+-++.+... ......+..+||||||||++
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~---~~~~l~~~gL~-~~~~~~~~~~LSgGq~qrl~ 155 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE--K---ALKWLKKVGLS-EDLISKSPFELSGGQMRRVA 155 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH--H---HHHHHHHcCCC-hhHhhCCcccCCHHHHHHHH
Confidence 68999997 4667899999987632 11111111 1 11223332211 01235677899999999999
Q ss_pred HHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHHh
Q 000463 780 LARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 780 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++++. .||++++|++|++++.|+++++.+
T Consensus 156 laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999988765554446899999999999986 499999999999999999888754
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=338.06 Aligned_cols=207 Identities=29% Similarity=0.408 Sum_probs=165.5
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC----------------
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG---------------- 708 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g---------------- 708 (1479)
++++|++++|++ ++++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468899999953 25799999999999999999999999999999999999999999999876
Q ss_pred eEEEEeccCcCCC-CcHHHHHhcCCCCChh-------hHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHH
Q 000463 709 TTAYVAQTSWIQN-GTIEENILFGLPMNRA-------KYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQL 780 (1479)
Q Consensus 709 ~iayv~Q~~~i~~-~Tv~enI~fg~~~~~~-------~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 780 (1479)
.++|++|++.++. .|++||+.++...... ...+. ......+.++.+.. ......++.+|||||||||+|
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~l 155 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE-EKQRALAALERVGL--LDKAYQRADQLSGGQQQRVAI 155 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHH-HHHHHHHHHHHcCC--hhhhCCCcccCCHHHHHHHHH
Confidence 2789999987664 7999999876321000 00000 00011122333322 223456788999999999999
Q ss_pred HHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHH
Q 000463 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALL 856 (1479)
Q Consensus 781 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~ 856 (1479)
|||++.+|+++||||||++||+.+.+.+++.+.+... .|+|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 156 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 156 ARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 9999999999999999999999999999876665544 4899999999999987 59999999999999999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=327.31 Aligned_cols=194 Identities=21% Similarity=0.341 Sum_probs=169.4
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ..+|+++++
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 478999999964 35899999999999999999999999999999999999999999999999987543 467889999
Q ss_pred EcCccccc-cccHhhhcCCC-CCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCE
Q 000463 1348 IPQEPVLF-EGTVRSNIDPI-GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRL 1425 (1479)
Q Consensus 1348 IpQdp~LF-~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~I 1425 (1479)
+||++.++ ..|+++|+... ....++++.++++..++.+..... ..+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRP-----------VAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCc-----------hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999876 57999999643 234677889999999997654322 246999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEE
Q 000463 1426 LFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVV 1475 (1479)
Q Consensus 1426 LiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL 1475 (1479)
|||||||++||+.+.+.+.+.|++.. +++|+|+|||+...+.+ ||+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998754 47999999998776655 9999987
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=334.02 Aligned_cols=203 Identities=29% Similarity=0.423 Sum_probs=165.0
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--------------eE
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------------TT 710 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------~i 710 (1479)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|.++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 468999999952 4799999999999999999999999999999999999999999999887 27
Q ss_pred EEEeccCcCCC-CcHHHHHhcCCCCCh-hhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCC
Q 000463 711 AYVAQTSWIQN-GTIEENILFGLPMNR-AKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDC 788 (1479)
Q Consensus 711 ayv~Q~~~i~~-~Tv~enI~fg~~~~~-~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 788 (1479)
+|++|++.++. .|++||+.++..... ....+. ..+-++.++ +.......++.+||||||||++||||++.+|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHH-----HHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 99999987766 599999988653221 111111 111122221 0112345678899999999999999999999
Q ss_pred CEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHH
Q 000463 789 DIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALL 856 (1479)
Q Consensus 789 ~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~ 856 (1479)
+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999987665554468999999999998765 8999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=333.97 Aligned_cols=161 Identities=24% Similarity=0.416 Sum_probs=126.3
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCcc-ccccccHhhhcCCCC--
Q 000463 1291 SIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEP-VLFEGTVRSNIDPIG-- 1367 (1479)
Q Consensus 1291 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp-~LF~gTIR~NLdp~~-- 1367 (1479)
+|..||.+||+||||-||||++++|.|.++|++|. ..++ +++|=||-- .-|+|||++-|.-..
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeecceeecCCCCCcHHHHHHHhhhh
Confidence 45677899999999999999999999999999998 3333 688999975 348999998774211
Q ss_pred CCCHHHHH-HHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHH
Q 000463 1368 QYSDEEIW-KSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRI 1446 (1479)
Q Consensus 1368 ~~sd~eI~-~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~ 1446 (1479)
.+.+.-.+ +..+ |-.++-.+...-.+|||||.||+++|-||.|++++.+||||+|.||.+..-.+-++
T Consensus 429 ~~~~s~~~~ei~~-----------pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakv 497 (591)
T COG1245 429 AFGSSYFKTEIVK-----------PLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKV 497 (591)
T ss_pred hcccchhHHhhcC-----------ccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHH
Confidence 12221111 1222 33333333333457999999999999999999999999999999999999999999
Q ss_pred HHHHc--CCcEEEEEccChhhhhh-cCEEEEEe
Q 000463 1447 IREEF--AACTIISIAHRIPTVMD-CDRVIVVD 1476 (1479)
Q Consensus 1447 I~~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~ 1476 (1479)
||+.. .++|.++|-|++-.+.. +||++|.+
T Consensus 498 IRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 498 IRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 98854 57899999999998877 99999986
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=308.77 Aligned_cols=498 Identities=19% Similarity=0.200 Sum_probs=322.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 319 RTTLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSS-F---YEGYYLVLILLVAKFVEVFSTHQFNFNSQ 394 (1479)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~-~---~~g~~l~~~l~~~~~~~~~~~~~~~~~~~ 394 (1479)
.-.++|.+++.++....+.+...+. +-.+|-.+-+++-+.+.. . .+-.++...++++..+ ++.-..+..+
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~---g~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~i---s~lg~t~~gq 77 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGAL---GIGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLI---SQLGLTTLGQ 77 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 4467888888887666665554433 333444344444322211 1 0111111222222222 2222222222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000463 395 KLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITT 474 (1479)
Q Consensus 395 ~~g~riR~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~ri~~~~~~~~~~w~~plqi~lal~lL~~~lG~s~l~g 474 (1479)
..-.++|.-+ -+|.+.-+-....+.+.+.++.-++.|+..|.-....+.++-.+.+-+..+...|+..-+...+..
T Consensus 78 ~~I~klr~~~----~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~ 153 (546)
T COG4615 78 HFIYKLRSEF----IKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLT 153 (546)
T ss_pred HHHHHHHHHH----HHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3333455444 456665555555566788899999999999997777777666555545555566666666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH--HHHHHHH-HHHHHHHHHHHHHHHHHH
Q 000463 475 VVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWE--DHFNKRI-LSFRESEFGWLTKFMYSI 551 (1479)
Q Consensus 475 l~~~il~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE--~~f~~~I-~~~R~~El~~l~k~~~~~ 551 (1479)
++.+++.+..+.+..++..++..+-.+.-|+-.+..+.++.|-|-+|++.=. ..+.+.+ .+.++.|- ...+..
T Consensus 154 vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~----~~~~~n 229 (546)
T COG4615 154 VVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH----HIIRAN 229 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh----hhhhhh
Confidence 8888888888888877777777777888888899999999999999987632 2222222 22222221 111211
Q ss_pred HHH-HHHHHHHHHHHHHHH--HHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 000463 552 SGN-IIVMWSTPVLISTLT--FATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSREL 628 (1479)
Q Consensus 552 a~~-~~~~~~~p~~v~~~t--F~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~ 628 (1479)
..+ ....|..-.+.+++. |......+=+ +...+.|....+-.|+.|+.++...++.+.+|.|+++||.++=..|+.
T Consensus 230 ~f~~la~~~~ni~l~~lIGlvf~lal~~~w~-st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~ 308 (546)
T COG4615 230 TFHLLAVNWSNIMLLGLIGLVFWLALSLGWA-STNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYK 308 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCcc
Confidence 111 223344333333333 3333222211 112344444445568999999999999999999999999998775554
Q ss_pred cccccccccCCCCCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC
Q 000463 629 VNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG 708 (1479)
Q Consensus 629 ~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g 708 (1479)
.+-..+ .+.+ +-..++++|+.|+|.+. ..-+..||++|++||+|-|+|.||||||||++.+.|+++|++|+|.++|
T Consensus 309 a~~~~~-q~~p-~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg 384 (546)
T COG4615 309 ADFPRP-QAFP-DWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384 (546)
T ss_pred ccCCCC-CcCC-cccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECC
Confidence 322111 1111 23579999999999743 3678899999999999999999999999999999999999999999999
Q ss_pred eE-------------EEEeccCcCCCCcHHHHHhcCCC-CChhhHHHHHHHhchHHHHHhcccCCccccccC---CCccc
Q 000463 709 TT-------------AYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGER---GINLS 771 (1479)
Q Consensus 709 ~i-------------ayv~Q~~~i~~~Tv~enI~fg~~-~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~---g~~LS 771 (1479)
+. +-|+-+-|+|..++ -+.. -.++..++- ++.++....|.+.++ ...||
T Consensus 385 ~pV~~e~ledYR~LfSavFsDyhLF~~ll-----~~e~~as~q~i~~~---------LqrLel~~ktsl~d~~fs~~kLS 450 (546)
T COG4615 385 KPVSAEQLEDYRKLFSAVFSDYHLFDQLL-----GPEGKASPQLIEKW---------LQRLELAHKTSLNDGRFSNLKLS 450 (546)
T ss_pred ccCCCCCHHHHHHHHHHHhhhHhhhHhhh-----CCccCCChHHHHHH---------HHHHHHhhhhcccCCcccccccc
Confidence 63 12223333332211 1111 112222222 222222222333222 24699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhh-cCCcEEEEEccCCcccccCCEEEEEeCCEEEEe
Q 000463 772 GGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGA-LKGKTIILVTHQVDFLHNVDLILVMREGMIVQS 849 (1479)
Q Consensus 772 GGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~ 849 (1479)
-|||.|+++--|+..+.|||+|||=-+.-||+-++..++..+-.+ .+|||++.||||-.+...|||++.|++|++++.
T Consensus 451 tGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 451 TGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred cchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 999999999999999999999999999999999999998887544 469999999999999999999999999999874
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=316.47 Aligned_cols=207 Identities=29% Similarity=0.433 Sum_probs=176.9
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe--------------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------- 709 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------- 709 (1479)
.++++|++..|.. .++|++|||++++||+++|+|+||+||||||++|.|..++.+|+|.++|.
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 5789999999953 57999999999999999999999999999999999999999999999984
Q ss_pred EEEEeccCcCC-CCcHHHHHhcCCCCChh-hHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcC
Q 000463 710 TAYVAQTSWIQ-NGTIEENILFGLPMNRA-KYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD 787 (1479)
Q Consensus 710 iayv~Q~~~i~-~~Tv~enI~fg~~~~~~-~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 787 (1479)
++||||.-.+| +.||+||+..|....+. ... ...+++-++.+|.- ......++.+|||||||.++|||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~----~~~~e~v~~lFP~L-ker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQ----ERDLEEVYELFPRL-KERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccc----cccHHHHHHHChhH-HHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 79999998887 57999999998543322 111 11144556677742 2245678999999999999999999999
Q ss_pred CCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCccc-ccCCEEEEEeCCEEEEecChHHHHhc
Q 000463 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFL-HNVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 788 ~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l-~~~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
|++++||||+.+|-|...++||+.+.+...+ |.||++|.++..+. +.+||.++|++|+|+.+|+.+|+.++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999877666544 77999999999985 56999999999999999999998764
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=342.02 Aligned_cols=200 Identities=23% Similarity=0.392 Sum_probs=172.3
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCC---ccEEEEcCEecCCCC-----h
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS---GGRIIIDGIDISLLG-----L 1338 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~---~G~I~IDG~dI~~i~-----l 1338 (1479)
-++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++...+ .
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999963 45999999999999999999999999999999999999986 499999999987542 3
Q ss_pred hhhhcceEEEcCccccccc-cHhhhcCCCC---------------CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCC
Q 000463 1339 HDLRSRFGIIPQEPVLFEG-TVRSNIDPIG---------------QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSG 1402 (1479)
Q Consensus 1339 ~~LR~~i~iIpQdp~LF~g-TIR~NLdp~~---------------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1402 (1479)
..+|++++++||++.+|.+ |+++|+.... ...++++.++++..++.+..... .
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR-----------V 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC-----------c
Confidence 5678899999999998875 9999996210 11234678888888887655433 2
Q ss_pred CCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1403 DNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1403 ~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
.+||+|||||++||||++.+|++|||||||++||.++.+.+.+.|++..+ ++|||+|+|+++.+.. ||||++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 46899999999999999999999999999999999999999999998753 7899999999998766 99999999985
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=328.08 Aligned_cols=177 Identities=24% Similarity=0.437 Sum_probs=157.3
Q ss_pred cEEEEeeeeeecCC----CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccC--CCCccEEEEcCEecCCCChhh
Q 000463 1267 NVDLIDLQVRYRSN----TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLV--EPSGGRIIIDGIDISLLGLHD 1340 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~----~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~--~p~~G~I~IDG~dI~~i~l~~ 1340 (1479)
.++++|++++|+.. ..++|+|+||+|++||++||+|++|||||||+++|.|++ +|++|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999752 246999999999999999999999999999999999999 9999999999999874 36
Q ss_pred hhcceEEEcCccccccc-cHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHh
Q 000463 1341 LRSRFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1341 LR~~i~iIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1419 (1479)
.|++++++||++.+|.+ |+++|+... . ... .||+|||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~---------~---~~~---------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFA---------A---KLR---------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHH---------H---Hhc---------------------cCCHHHHHHHHHHHHH
Confidence 78899999999998875 999998411 0 000 6999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChh-hhhh-cCEEEEEeCCC
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIP-TVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~-ti~~-~DrIlVL~~G~ 1479 (1479)
+++|++|+|||||++||..+.+.+.+.|++.. +++|+|+|+|+++ .+.+ ||+|++|++|+
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~ 189 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGR 189 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCE
Confidence 99999999999999999999999999999865 4789999999997 5654 99999999985
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=346.91 Aligned_cols=205 Identities=27% Similarity=0.413 Sum_probs=168.4
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC------------eE
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------TT 710 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------~i 710 (1479)
..|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~~i~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred cEEEEEeEEEEeC---CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 4689999999995 34699999999999999999999999999999999999999999999987 37
Q ss_pred EEEeccCcCC-CCcHHHHHhcCCC---CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhc
Q 000463 711 AYVAQTSWIQ-NGTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQ 786 (1479)
Q Consensus 711 ayv~Q~~~i~-~~Tv~enI~fg~~---~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 786 (1479)
+|+||++.++ ..|++||+.+... .+....++. ..+-++.+... .....+..+||||||||++||||++.
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEFARLE--SKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHCCCh--hHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 9999998776 5799999975211 111111111 11222222221 22345677999999999999999999
Q ss_pred CCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 787 DCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 787 ~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
+|+++||||||++||+.+++.+++.+.+...+|+|+|++||+++++.. ||+|++|++|+++..|+++++.+
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999987666655568999999999999865 99999999999999999988764
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=351.59 Aligned_cols=202 Identities=24% Similarity=0.400 Sum_probs=171.3
Q ss_pred cEEEEeeeeeecC--CCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCC----CCccEEEEcCEecCCCChhh
Q 000463 1267 NVDLIDLQVRYRS--NTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVE----PSGGRIIIDGIDISLLGLHD 1340 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~--~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~----p~~G~I~IDG~dI~~i~l~~ 1340 (1479)
-++++|++++|+. +...+|+||||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3789999999953 22459999999999999999999999999999999999986 58999999999999888776
Q ss_pred hh----cceEEEcCccc--cc-cccHhhhcC-C---C---CC------CCHHHHHHHHHHcCchHH---HHhCcCCcccc
Q 000463 1341 LR----SRFGIIPQEPV--LF-EGTVRSNID-P---I---GQ------YSDEEIWKSLERCQLKDV---VAAKPDKLDSL 1397 (1479)
Q Consensus 1341 LR----~~i~iIpQdp~--LF-~gTIR~NLd-p---~---~~------~sd~eI~~aL~~~~L~~~---i~~lp~gLdt~ 1397 (1479)
++ ++|++|||+|. ++ ..||.+|+. + . +. ..++++.++|++++|.+. ....|
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p------ 156 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP------ 156 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc------
Confidence 53 47999999996 33 348888874 1 1 10 113568889999999743 22333
Q ss_pred ccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEE
Q 000463 1398 VADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIV 1474 (1479)
Q Consensus 1398 v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlV 1474 (1479)
..||||||||++|||||+.+|+|||+||||++||+.+...|.+.|++..+ +.|+|+|||+++.+.. ||||+|
T Consensus 157 -----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~v 231 (330)
T PRK15093 157 -----YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINV 231 (330)
T ss_pred -----hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 46899999999999999999999999999999999999999999998654 7899999999999977 999999
Q ss_pred EeCCC
Q 000463 1475 VDAGL 1479 (1479)
Q Consensus 1475 L~~G~ 1479 (1479)
|++|+
T Consensus 232 m~~G~ 236 (330)
T PRK15093 232 LYCGQ 236 (330)
T ss_pred EECCE
Confidence 99995
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=355.11 Aligned_cols=205 Identities=24% Similarity=0.389 Sum_probs=170.5
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------eE
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------TT 710 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~i 710 (1479)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| ++
T Consensus 3 ~L~~~nls~~y~---~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 588999999995 35799999999999999999999999999999999999999999999988 27
Q ss_pred EEEeccCcC-CCCcHHHHHhcCCCC-----C--hhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHH
Q 000463 711 AYVAQTSWI-QNGTIEENILFGLPM-----N--RAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLAR 782 (1479)
Q Consensus 711 ayv~Q~~~i-~~~Tv~enI~fg~~~-----~--~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 782 (1479)
||++|++-+ ++.|++||+.++... . ....++ ..++-++.+... ........+||||||||++|||
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~-----~v~~~le~vgl~--~~~~~~~~~LSgGerQRv~IAr 152 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRA-----AVERAMERTGVA--QFADRPVTSLSGGERQRVLLAR 152 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHH-----HHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHH
Confidence 999999876 678999999987521 1 111111 112223333222 1234567899999999999999
Q ss_pred HHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHHhc
Q 000463 783 AVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 783 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
||+++|+++||||||++||+..+..+++.+.+...+|+|+|++||+++.+. .||++++|++|++++.|++++++..
T Consensus 153 AL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 153 ALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 999999999999999999999999998766655556899999999999986 5999999999999999999998753
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=353.12 Aligned_cols=210 Identities=28% Similarity=0.407 Sum_probs=172.4
Q ss_pred CccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-----------E
Q 000463 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-----------T 710 (1479)
Q Consensus 642 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-----------i 710 (1479)
...++++|++++|+ +.++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|. +
T Consensus 17 ~~~l~l~~v~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 17 TPLLEIRNLTKSFD---GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPI 93 (377)
T ss_pred CceEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 34699999999995 246999999999999999999999999999999999999999999999883 7
Q ss_pred EEEeccCcCC-CCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCC
Q 000463 711 AYVAQTSWIQ-NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCD 789 (1479)
Q Consensus 711 ayv~Q~~~i~-~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 789 (1479)
+||+|++-++ ..||+|||.|+.........+..+ ...+-++.+... .....++.+|||||||||+|||||+.+|+
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~--~v~~~l~~l~L~--~~~~~~~~~LSgGq~QRVaLARAL~~~P~ 169 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS--RVNEMLGLVHMQ--EFAKRKPHQLSGGQRQRVALARSLAKRPK 169 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999998877 569999999975321101111111 122233333322 23456778999999999999999999999
Q ss_pred EEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHHhc
Q 000463 790 IYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 790 illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
++|||||||+||+..++.+.+.+.+... .|.|+|+||||.+++. .||+|++|++|++++.|+++++..+
T Consensus 170 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 170 LLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 9999999999999999999876665544 4899999999999865 5999999999999999999998764
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=334.89 Aligned_cols=201 Identities=25% Similarity=0.360 Sum_probs=164.2
Q ss_pred cEEEEeeEEEecCCC-CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--------------
Q 000463 644 AVEVRDGVFSWDDEN-GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------- 708 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------- 708 (1479)
.++++|+++.|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 589999999996422 24799999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEeccCcCCC-CcHHHHHhcCCC---CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHH
Q 000463 709 ---TTAYVAQTSWIQN-GTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLA 781 (1479)
Q Consensus 709 ---~iayv~Q~~~i~~-~Tv~enI~fg~~---~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 781 (1479)
.++|++|++.++. .|++||+.++.. .+....++ ...+-++.+.. .....+++.+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~gl--~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS-----RALEMLAAVGL--EHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCC--chhhhCChhhCCHHHHHHHHHH
Confidence 2799999987765 599999987432 11111111 11222333322 2334567789999999999999
Q ss_pred HHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCcccccCCEEEEEeCCEEEEecC
Q 000463 782 RAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHNVDLILVMREGMIVQSGR 851 (1479)
Q Consensus 782 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~ 851 (1479)
||++.+|+++||||||++||+.+.+.+.+.+.+... +|+|+|++||+++++..+|++++|++|++++.|+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999876655444 5899999999999998889999999999998765
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=335.26 Aligned_cols=206 Identities=25% Similarity=0.362 Sum_probs=166.5
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe--------------E
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT--------------T 710 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--------------i 710 (1479)
++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|..+|++|+|.++|. +
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYG---KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeC---CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 46899999995 346999999999999999999999999999999999999999999998762 7
Q ss_pred EEEeccCcCCC-CcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCC
Q 000463 711 AYVAQTSWIQN-GTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCD 789 (1479)
Q Consensus 711 ayv~Q~~~i~~-~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 789 (1479)
+|++|++.++. .|++||+.++.+.......+..+ ...+-++.+. ......+.+.+||||||||++||||++.+|+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~l~~~~--l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 153 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE--KLEELLEEFH--ITHLRKSKASSLSGGERRRVEIARALATNPK 153 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHcC--ChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 89999987765 59999998754321100111111 1122233332 2233456778999999999999999999999
Q ss_pred EEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 790 IYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 790 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
++||||||++||+.+.+.+++.+.+...+|+|+|++||+++.+.. ||++++|++|++++.|+.+++..
T Consensus 154 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 154 FLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999987665554568999999999988765 89999999999999999887653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=354.25 Aligned_cols=187 Identities=25% Similarity=0.333 Sum_probs=163.4
Q ss_pred CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCE----ecCCCChhhh---h-cceEEEcCccc
Q 000463 1282 PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI----DISLLGLHDL---R-SRFGIIPQEPV 1353 (1479)
Q Consensus 1282 ~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~----dI~~i~l~~L---R-~~i~iIpQdp~ 1353 (1479)
..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. |+...+.+.+ | +++++|||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35899999999999999999999999999999999999999999999996 6777765554 3 57999999999
Q ss_pred ccc-ccHhhhcCCC---CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCE
Q 000463 1354 LFE-GTVRSNIDPI---GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRL 1425 (1479)
Q Consensus 1354 LF~-gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~I 1425 (1479)
+|. .|+++|+... ...+ .+++.++++.++|.++....| .+||||||||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 6999999631 1122 245788899999987655444 35899999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1426 LFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1426 LiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||||||||+||+.+.+.+++.|++..+ ++|+|+|||+++.+.. ||||++|++|+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~ 242 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGR 242 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999998754 7899999999999866 99999999995
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=336.96 Aligned_cols=203 Identities=24% Similarity=0.339 Sum_probs=166.8
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcc---cCCcEEEECCe-----------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH---KISGKVKVCGT----------- 709 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~---~~~G~i~~~g~----------- 709 (1479)
.|+++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|.
T Consensus 2 ~~~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYG---KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEEC---CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 478999999995 2479999999999999999999999999999999999974 69999999872
Q ss_pred --EEEEeccCcCCCCcHHHHHhcCCCCCh-----h----hHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHH
Q 000463 710 --TAYVAQTSWIQNGTIEENILFGLPMNR-----A----KYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRI 778 (1479)
Q Consensus 710 --iayv~Q~~~i~~~Tv~enI~fg~~~~~-----~----~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 778 (1479)
++|++|++.+++.|++||+.++..... . +..+.++..++.+.+. ....+++.+|||||||||
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------DKLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh-------HHhcCCcccCCHHHHHHH
Confidence 799999999988999999987632210 1 1112222222221111 124567789999999999
Q ss_pred HHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 779 QLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 779 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
+||||++++|+++||||||++||+.+...+.+.+.+. .+++|+|++||+++.+.. ||++++|++|++++.|+.+++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL-SHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999887655444 458999999999998865 89999999999999999888764
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=338.00 Aligned_cols=206 Identities=28% Similarity=0.367 Sum_probs=167.0
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCccc-----CCcEEEECC---------
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK-----ISGKVKVCG--------- 708 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~i~~~g--------- 708 (1479)
..++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 47999999999952 4699999999999999999999999999999999999987 589999876
Q ss_pred ------eEEEEeccCcCCCCcHHHHHhcCCCC----ChhhHHHHHHHhchHHHHHhcccC--CccccccCCCccchHHHH
Q 000463 709 ------TTAYVAQTSWIQNGTIEENILFGLPM----NRAKYGEVVRVCCLEKDLEMMEYG--DQTEIGERGINLSGGQKQ 776 (1479)
Q Consensus 709 ------~iayv~Q~~~i~~~Tv~enI~fg~~~----~~~~~~~v~~~~~l~~dl~~l~~g--d~t~ig~~g~~LSGGQkq 776 (1479)
.++|++|++.+++.|++|||.++... +....++.+ .+.++.+... .......++.+|||||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~l~~~~~~~~~~LSgG~~q 157 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIV-----EQSLKKSALWNEVKDKLNTNALSLSGGQQQ 157 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHH-----HHHHHHhCCchhhHHHHhCCcccCCHHHHH
Confidence 27999999998889999999986421 111111111 1111211110 011234578899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHH
Q 000463 777 RIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNAL 855 (1479)
Q Consensus 777 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l 855 (1479)
||+||||++.+|+++||||||++||+.+.+.+++.+.+. .+++|+|++||+++++.. ||++++|++|++++.|+++++
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-KESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999998755554 457999999999999865 899999999999999999888
Q ss_pred Hh
Q 000463 856 LN 857 (1479)
Q Consensus 856 ~~ 857 (1479)
.+
T Consensus 237 ~~ 238 (254)
T PRK14273 237 FF 238 (254)
T ss_pred Hh
Confidence 64
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=337.82 Aligned_cols=209 Identities=30% Similarity=0.418 Sum_probs=167.7
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------eEE
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------TTA 711 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~ia 711 (1479)
++++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4688999999631 4699999999999999999999999999999999999999999999987 269
Q ss_pred EEeccCcCCC-CcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCE
Q 000463 712 YVAQTSWIQN-GTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDI 790 (1479)
Q Consensus 712 yv~Q~~~i~~-~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 790 (1479)
|++|++.++. .|++||+.++..+......+ . .....+.++.+.........+++.+||||||||++||||++.+|++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~-~-~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 156 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEK-I-RERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPL 156 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHH-H-HHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999998774 79999998763221100011 0 1112233444432211134567889999999999999999999999
Q ss_pred EEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 791 YLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 791 llLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
+||||||++||+.+.+.+.+.+.+...+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 157 lllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 157 LLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999888766655443 8999999999998764 89999999999999999887754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=331.71 Aligned_cols=194 Identities=23% Similarity=0.373 Sum_probs=165.9
Q ss_pred EEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCC----Chhhhhcc
Q 000463 1269 DLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLL----GLHDLRSR 1344 (1479)
Q Consensus 1269 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i----~l~~LR~~ 1344 (1479)
++ |++++|+.. .+ |+||+|++ |++||+|+||||||||+++|.|+++|++|+|.+||.++... +....|++
T Consensus 3 ~~-~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 3 CV-DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred ee-eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 44 899999753 24 99999999 99999999999999999999999999999999999998643 23457889
Q ss_pred eEEEcCccccccc-cHhhhcCCC-CCC----CHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHH
Q 000463 1345 FGIIPQEPVLFEG-TVRSNIDPI-GQY----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRV 1418 (1479)
Q Consensus 1345 i~iIpQdp~LF~g-TIR~NLdp~-~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1418 (1479)
++++||++.+|.+ |+++|+... ..+ .++++.+++++.++.+.... ...+||||||||++||||
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~a 145 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNR-----------YPAQLSGGEKQRVALARA 145 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhc-----------CcccCCHHHHHHHHHHHH
Confidence 9999999999864 999999632 111 23457778888877654433 335799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1419 MLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1419 LLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
++++|+||||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|+
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 146 LAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGR 209 (214)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 9999999999999999999999999999998643 7899999999999976 99999999995
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=349.31 Aligned_cols=211 Identities=24% Similarity=0.358 Sum_probs=170.7
Q ss_pred CccEEEEeeEEEecCCC----------CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC---
Q 000463 642 NIAVEVRDGVFSWDDEN----------GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--- 708 (1479)
Q Consensus 642 ~~~i~~~~~~f~~~~~~----------~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--- 708 (1479)
+..++++|++++|+... ..++++|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 45799999999996421 24689999999999999999999999999999999999999999999877
Q ss_pred -------------eEEEEeccCc--C-CCCcHHHHHhcCCC-----CChhhHHHHHHHhchHHHHHhcccCCccccccCC
Q 000463 709 -------------TTAYVAQTSW--I-QNGTIEENILFGLP-----MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERG 767 (1479)
Q Consensus 709 -------------~iayv~Q~~~--i-~~~Tv~enI~fg~~-----~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g 767 (1479)
.++||+|+|. + +..||.|||.++.. .+++..++.. .+-++.+... .......+
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~-----~~~l~~vgl~-~~~~~~~p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRV-----KAMMLKVGLL-PNLINRYP 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCC-hHHhcCCc
Confidence 3799999983 4 46899999976421 2222111111 1122322221 11345678
Q ss_pred CccchHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCccccc-CCEEEEEeCCE
Q 000463 768 INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHN-VDLILVMREGM 845 (1479)
Q Consensus 768 ~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~-~D~i~~l~~G~ 845 (1479)
.+|||||||||+||||++.+|+++|+||||++||+.++.++.+.+.+... .|.|+|+||||++.+.. ||+|++|++|+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ 239 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGH 239 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999876655544 38999999999999875 99999999999
Q ss_pred EEEecChHHHHhc
Q 000463 846 IVQSGRYNALLNS 858 (1479)
Q Consensus 846 i~~~g~~~~l~~~ 858 (1479)
|++.|+.+++.++
T Consensus 240 ive~g~~~~i~~~ 252 (331)
T PRK15079 240 AVELGTYDEVYHN 252 (331)
T ss_pred EEEEcCHHHHHcC
Confidence 9999999998764
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=330.76 Aligned_cols=193 Identities=35% Similarity=0.525 Sum_probs=155.1
Q ss_pred EEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe--------EEEEeccCc
Q 000463 647 VRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT--------TAYVAQTSW 718 (1479)
Q Consensus 647 ~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--------iayv~Q~~~ 718 (1479)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|. ++|++|++.
T Consensus 2 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 2 VEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred cccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccc
Confidence 6789999952 46999999999999999999999999999999999999999999999883 899999986
Q ss_pred C---CCCcHHHHHhcCCCCC-------hhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCC
Q 000463 719 I---QNGTIEENILFGLPMN-------RAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDC 788 (1479)
Q Consensus 719 i---~~~Tv~enI~fg~~~~-------~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 788 (1479)
+ ++.|++||+.++.... .+..++ ...+-++.+... ........+||||||||++||||++.+|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p 151 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKA-----KVDEALERVGLS--ELADRQIGELSGGQQQRVLLARALVQDP 151 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHH-----HHHHHHHHcCCH--HHHhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 5 4579999998864311 011110 111222222211 1234567899999999999999999999
Q ss_pred CEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEec
Q 000463 789 DIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSG 850 (1479)
Q Consensus 789 ~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g 850 (1479)
+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++++.. ||++++|++| +++.|
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 152 DLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999987666554578999999999999865 8999999986 55443
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=336.14 Aligned_cols=197 Identities=27% Similarity=0.342 Sum_probs=163.6
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--------eEEEEe
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------TTAYVA 714 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------~iayv~ 714 (1479)
..|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++| .++|++
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 46999999999952 4799999999999999999999999999999999999999999999877 389999
Q ss_pred ccCcCCC-CcHHHHHhcCCCCC-hhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEE
Q 000463 715 QTSWIQN-GTIEENILFGLPMN-RAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYL 792 (1479)
Q Consensus 715 Q~~~i~~-~Tv~enI~fg~~~~-~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ill 792 (1479)
|++.++. .|++||+.++.... .++..+ -++.+.. ......++.+||||||||++||||++.+|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~---------~l~~~gl--~~~~~~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQ---------ALAAVGL--ADRANEWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHH---------HHHHcCC--hhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9987765 79999999864211 111112 2222222 123456778999999999999999999999999
Q ss_pred EeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChH
Q 000463 793 LDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYN 853 (1479)
Q Consensus 793 LDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~ 853 (1479)
|||||++||+.+.+.+.+.+.+... .++|+|++||+++++.. ||+|++|++|++++.|+.+
T Consensus 157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999876655433 48999999999999764 8999999999999887654
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=336.60 Aligned_cols=208 Identities=30% Similarity=0.407 Sum_probs=166.8
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccC-----CcEEEECC----------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI-----SGKVKVCG---------- 708 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~-----~G~i~~~g---------- 708 (1479)
+++++|++++|++ .++++|+||++++||+++|+|+||||||||+++|+|..+|+ +|+|.++|
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~ 77 (247)
T TIGR00972 1 AIEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDV 77 (247)
T ss_pred CEEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccch
Confidence 4789999999953 46999999999999999999999999999999999999998 99999876
Q ss_pred -----eEEEEeccCcCCCCcHHHHHhcCCCCChh-hHHHHHHHhchHHHHHhcccCC--ccccccCCCccchHHHHHHHH
Q 000463 709 -----TTAYVAQTSWIQNGTIEENILFGLPMNRA-KYGEVVRVCCLEKDLEMMEYGD--QTEIGERGINLSGGQKQRIQL 780 (1479)
Q Consensus 709 -----~iayv~Q~~~i~~~Tv~enI~fg~~~~~~-~~~~v~~~~~l~~dl~~l~~gd--~t~ig~~g~~LSGGQkqRv~L 780 (1479)
.++|+||+++++..|++||+.++...... ..++..+. ..+-++.+.... .......+.+||||||||++|
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 155 (247)
T TIGR00972 78 VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEI--VEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCI 155 (247)
T ss_pred HHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHH--HHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHH
Confidence 27899999998889999999876322110 00111111 112223332210 023456788999999999999
Q ss_pred HHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 781 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
|||++.+|+++||||||++||+.+.+.+++.+.+. .+++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 156 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 156 ARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL-KKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999988655443 345899999999998865 89999999999999999888754
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=331.52 Aligned_cols=202 Identities=21% Similarity=0.318 Sum_probs=161.5
Q ss_pred EEEEeeEEEecCCCC-cccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC------------eEE
Q 000463 645 VEVRDGVFSWDDENG-EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------TTA 711 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------~ia 711 (1479)
++++|++++|++... .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 688999999964211 2699999999999999999999999999999999999999999999987 379
Q ss_pred EEeccCcCCC-CcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCE
Q 000463 712 YVAQTSWIQN-GTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDI 790 (1479)
Q Consensus 712 yv~Q~~~i~~-~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 790 (1479)
|++|++.++. .|++||+.+.........++..+ ...+.++.+. ......+++.+||||||||++||||++.+|++
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~l~~~~--l~~~~~~~~~~LS~G~~qrv~laral~~~p~i 157 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA--RLEELADRLG--MEELLDRRVGGFSTGMRQKVAIARALVHDPPV 157 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHcC--CHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence 9999998776 59999997643211000111111 1122233332 22334567889999999999999999999999
Q ss_pred EEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEec
Q 000463 791 YLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSG 850 (1479)
Q Consensus 791 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g 850 (1479)
+||||||++||+.+.+.+.+.+.+...+|+|+|++||+++++.. +|++++|++|++++.|
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999987665554568999999999998865 8999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=333.38 Aligned_cols=204 Identities=28% Similarity=0.386 Sum_probs=160.4
Q ss_pred EEEEeeEEEecCCC-CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC---------------
Q 000463 645 VEVRDGVFSWDDEN-GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------------- 708 (1479)
Q Consensus 645 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------- 708 (1479)
++++|+++.|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996321 12699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEeccCc--C-CCCcHHHHHhcCCCCC-hhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHH
Q 000463 709 -TTAYVAQTSW--I-QNGTIEENILFGLPMN-RAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARA 783 (1479)
Q Consensus 709 -~iayv~Q~~~--i-~~~Tv~enI~fg~~~~-~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 783 (1479)
.++|++|++. + .+.|++||+.++.... .....+..+.. ..+.++.+... ......++.+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~-~~~~l~~~~l~-~~~~~~~~~~LS~G~~qrv~lara 159 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA-VLLLLVGVGLP-EEVLNRYPHELSGGQRQRVAIARA 159 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH-HHHHHHHCCCC-hhHhhCCchhcCHHHHHHHHHHHH
Confidence 3799999983 3 4689999998653211 01111111110 01233333221 123567788999999999999999
Q ss_pred HhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCcccc-cCCEEEEEeCCEEEEec
Q 000463 784 VYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLH-NVDLILVMREGMIVQSG 850 (1479)
Q Consensus 784 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g 850 (1479)
++.+|+++||||||++||+.+.+.+++.+.+...+ |+|+|++||+++.+. .||++++|++|++++.|
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999998766555444 899999999999987 59999999999998654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=341.68 Aligned_cols=206 Identities=27% Similarity=0.431 Sum_probs=168.8
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-------------
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------- 709 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------- 709 (1479)
..++++|+++.|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|.
T Consensus 4 ~~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 81 (283)
T PRK13636 4 YILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81 (283)
T ss_pred ceEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHH
Confidence 36899999999952 346999999999999999999999999999999999999999999999872
Q ss_pred --EEEEeccC--cCCCCcHHHHHhcCCCC---ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHH
Q 000463 710 --TAYVAQTS--WIQNGTIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLAR 782 (1479)
Q Consensus 710 --iayv~Q~~--~i~~~Tv~enI~fg~~~---~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 782 (1479)
++|++|++ .+++.|++||+.++... ......+. ..+-++.+.. ......++.+||||||||++|||
T Consensus 82 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~gL--~~~~~~~~~~LS~G~~qrl~lar 154 (283)
T PRK13636 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRTGI--EHLKDKPTHCLSFGQKKRVAIAG 154 (283)
T ss_pred hhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHCCC--hhhhhCCcccCCHHHHHHHHHHH
Confidence 69999998 56788999999875321 11111110 1112222221 12234678899999999999999
Q ss_pred HHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHHh
Q 000463 783 AVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 783 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
||+.+|+++||||||++||+.+.+.+++.+.+...+ |+|+|++||+++++. .||++++|++|++++.|+++++.+
T Consensus 155 aL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 155 VLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999998766555444 899999999999987 599999999999999999988765
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=329.58 Aligned_cols=196 Identities=30% Similarity=0.454 Sum_probs=160.8
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-----------eEEEE
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-----------TTAYV 713 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-----------~iayv 713 (1479)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 468999999953 4799999999999999999999999999999999999999999999987 37999
Q ss_pred eccCcCC-CCcHHHHHhcCCCC---ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCC
Q 000463 714 AQTSWIQ-NGTIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCD 789 (1479)
Q Consensus 714 ~Q~~~i~-~~Tv~enI~fg~~~---~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 789 (1479)
+|++.++ +.|++||+.++... ..+..++. ..+.++.+. ..........+||||||||++||||++.+|+
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~--l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 150 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDER-----VREVAELLQ--IEHLLDRKPKQLSGGQRQRVALGRAIVREPK 150 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHcC--CHHHHhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999877 46999999876321 11111111 112233332 2223456778999999999999999999999
Q ss_pred EEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCccccc-CCEEEEEeCCEEEEec
Q 000463 790 IYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHN-VDLILVMREGMIVQSG 850 (1479)
Q Consensus 790 illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g 850 (1479)
++||||||++||+++.+.+++.+.+... .|+|+|++||+++++.. ||++++|++|++++.|
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 151 VFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999876665544 48999999999998875 8999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=334.58 Aligned_cols=209 Identities=29% Similarity=0.421 Sum_probs=168.0
Q ss_pred EEEEeeEEEecCCC-CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe--------------
Q 000463 645 VEVRDGVFSWDDEN-GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------- 709 (1479)
Q Consensus 645 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------- 709 (1479)
|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999996321 127999999999999999999999999999999999999999999998762
Q ss_pred --EEEEeccCcCCC-CcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhc
Q 000463 710 --TAYVAQTSWIQN-GTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQ 786 (1479)
Q Consensus 710 --iayv~Q~~~i~~-~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 786 (1479)
++|++|++.++. .|++||+.++.........+.. ....+.++.+.. .........+||||||||++||||++.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~--~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE--ERVLELLELVGL--EDKADAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHH--HHHHHHHHHCCC--hhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 799999998875 7999999875321100011111 112233343322 223456778999999999999999999
Q ss_pred CCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 787 DCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 787 ~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
+|+++||||||++||+.+.+.+++.+.+...+ |+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999998766555444 8999999999999865 89999999999999998877653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=322.02 Aligned_cols=172 Identities=31% Similarity=0.541 Sum_probs=157.7
Q ss_pred EEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEE
Q 000463 1269 DLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGII 1348 (1479)
Q Consensus 1269 ~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iI 1348 (1479)
+++|++++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++++
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999964 4599999999999999999999999999999999999999999999999999988888889999999
Q ss_pred cCccccccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEE
Q 000463 1349 PQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFM 1428 (1479)
Q Consensus 1349 pQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiL 1428 (1479)
|| +++.+++.++.... ..+||+|||||++||||++++|+++||
T Consensus 79 ~q--------------------------~l~~~gl~~~~~~~-----------~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLADRP-----------FNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhcCC-----------cccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 78888888765433 347999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1429 DEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1429 DEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||||++||.++.+.+.+.|++..+ ++|+|+++|+++.+.+ ||++++|++|+
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~ 175 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGR 175 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999998754 7899999999999866 99999999985
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=342.02 Aligned_cols=203 Identities=32% Similarity=0.435 Sum_probs=163.2
Q ss_pred EEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-----------------
Q 000463 646 EVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG----------------- 708 (1479)
Q Consensus 646 ~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g----------------- 708 (1479)
.++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 3456677764 34689999999999999999999999999999999999999999999876
Q ss_pred eEEEEeccCcCC-CCcHHHHHhcCCCC---ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHH
Q 000463 709 TTAYVAQTSWIQ-NGTIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAV 784 (1479)
Q Consensus 709 ~iayv~Q~~~i~-~~Tv~enI~fg~~~---~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 784 (1479)
.++|++|++.++ +.|++||+.++... +.....+ ...+.++.+.. ...+.....+||||||||++||||+
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l--~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREE-----RAAEALELVGL--EGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCC--HhHhhCCcccCCHHHHHHHHHHHHH
Confidence 379999999877 57999999875321 1111111 11122333322 1234566779999999999999999
Q ss_pred hcCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000463 785 YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 785 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
+.+|+++||||||++||+.+.+.+.+.+.+... .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999876655443 38999999999998765 899999999999999999888653
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=352.12 Aligned_cols=196 Identities=25% Similarity=0.412 Sum_probs=172.1
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCC----Chhhhhc
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLL----GLHDLRS 1343 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i----~l~~LR~ 1343 (1479)
+++ |++++|.. . .+ |+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... .....|+
T Consensus 2 l~~-~l~k~~~~--~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGD--L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCC--E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 566 89999964 2 23 99999999999999999999999999999999999999999999998753 2445688
Q ss_pred ceEEEcCcccccc-ccHhhhcCCC-CCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhcc
Q 000463 1344 RFGIIPQEPVLFE-GTVRSNIDPI-GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLK 1421 (1479)
Q Consensus 1344 ~i~iIpQdp~LF~-gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1421 (1479)
+++++||++.+|. .|+++|+... ....++++.++++..++.+.....| .+||||||||++|||||++
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHHc
Confidence 9999999999996 4999999742 2345678899999999877666554 3689999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1422 HSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1422 ~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+|++|+|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|+
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999998754 6899999999999877 99999999995
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=348.31 Aligned_cols=209 Identities=27% Similarity=0.396 Sum_probs=169.8
Q ss_pred CccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe------------
Q 000463 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------ 709 (1479)
Q Consensus 642 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------ 709 (1479)
...|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 39 ~~~i~i~nl~k~y~---~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 39 TVAIDLAGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred ceeEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhcc
Confidence 35799999999995 346999999999999999999999999999999999999999999999873
Q ss_pred EEEEeccCcCC-CCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCC
Q 000463 710 TAYVAQTSWIQ-NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDC 788 (1479)
Q Consensus 710 iayv~Q~~~i~-~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 788 (1479)
+||+||++.++ ..|++||+.+..........+..+. ..+-++.+...+ ....+..+||||||||++|||||+++|
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~ll~~~~L~~--~~~~~~~~LS~G~kqrv~lA~aL~~~P 191 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV--IPSLLEFARLES--KADARVSDLSGGMKRRLTLARALINDP 191 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHH--HHHHHHHcCCch--hhCCChhhCCHHHHHHHHHHHHHhcCC
Confidence 79999998875 6799999975321110000111111 111122222221 234567799999999999999999999
Q ss_pred CEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 789 DIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 789 ~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
+++||||||++||+.+++.+++.+.+...+|+|+|++||+++++.. ||+|++|++|+++..|+++++.+
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999987766655569999999999999875 99999999999999999998865
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=330.62 Aligned_cols=202 Identities=25% Similarity=0.411 Sum_probs=162.6
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe------------EEE
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------TAY 712 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------iay 712 (1479)
++++|+++.|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4688999999532 257999999999999999999999999999999999999999999999873 799
Q ss_pred EeccCcCC-CCcHHHHHhcCCC---CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCC
Q 000463 713 VAQTSWIQ-NGTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDC 788 (1479)
Q Consensus 713 v~Q~~~i~-~~Tv~enI~fg~~---~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 788 (1479)
++|++.++ +.|++||+.++.. .......+ + ..+-++.+... ........+||||||||++||||++.+|
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~--~---~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKE--E---VELLLRVLGLT--DKANKRARTLSGGMKRKLSLAIALIGGP 152 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHH--H---HHHHHHHcCCH--HHHhChhhhCCHHHHHHHHHHHHHhcCC
Confidence 99998776 6799999987532 11111111 0 11122222211 1234566799999999999999999999
Q ss_pred CEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHH
Q 000463 789 DIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNAL 855 (1479)
Q Consensus 789 ~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l 855 (1479)
+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 ~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 153 SVLLLDEPTSGLDPASRRAIWDLILEV-RKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999988655443 446999999999999875 899999999999999987764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=326.20 Aligned_cols=175 Identities=25% Similarity=0.333 Sum_probs=155.6
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcc--CCCCccEEEEcCEecCCCChhhh-hcc
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL--VEPSGGRIIIDGIDISLLGLHDL-RSR 1344 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl--~~p~~G~I~IDG~dI~~i~l~~L-R~~ 1344 (1479)
++++|++++|+. .++|+|+||++++||.+||+|+||||||||+++|.|+ ++|++|+|.+||.++.+.+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999973 3599999999999999999999999999999999999 58999999999999998876654 556
Q ss_pred eEEEcCccccccc-cHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCC
Q 000463 1345 FGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHS 1423 (1479)
Q Consensus 1345 i~iIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1423 (1479)
++++||+|.+|.+ |+++|++ . ...+||+|||||++||||++++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l~------------------------~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFLR------------------------Y-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHHh------------------------h-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999876 5665550 0 11369999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHcC-CcEEEEEccChhhhh--hcCEEEEEeCCC
Q 000463 1424 RLLFMDEATASVDSQTDAEIQRIIREEFA-ACTIISIAHRIPTVM--DCDRVIVVDAGL 1479 (1479)
Q Consensus 1424 ~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~-~~TvI~IAHRl~ti~--~~DrIlVL~~G~ 1479 (1479)
+||+|||||++||..+.+.+.+.|++..+ ++|+|++||+++.+. .||+|++|++|+
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~ 182 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGR 182 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCE
Confidence 99999999999999999999999998653 789999999999998 599999999985
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=340.78 Aligned_cols=208 Identities=28% Similarity=0.403 Sum_probs=169.9
Q ss_pred CccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCC---cEEEECC----------
Q 000463 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKIS---GKVKVCG---------- 708 (1479)
Q Consensus 642 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~---G~i~~~g---------- 708 (1479)
+..++++|+++.|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 3 ~~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 3 DNIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81 (282)
T ss_pred CceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHH
Confidence 3579999999999632 2469999999999999999999999999999999999999998 8999887
Q ss_pred ---eEEEEeccCc--CCCCcHHHHHhcCCCC---ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHH
Q 000463 709 ---TTAYVAQTSW--IQNGTIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQL 780 (1479)
Q Consensus 709 ---~iayv~Q~~~--i~~~Tv~enI~fg~~~---~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 780 (1479)
.++|++|+|. +++.|++|||.|+... +.+...+.+ .+-++.+.. .........+|||||||||+|
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~~L--~~~~~~~~~~LS~G~~qrv~l 154 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV-----RDVLADVGM--LDYIDSEPANLSGGQKQRVAI 154 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHH-----HHHHHHCCC--hhHhcCCcccCCHHHHHHHHH
Confidence 2799999984 6688999999986432 111111111 111222221 123456778999999999999
Q ss_pred HHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHh
Q 000463 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 781 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
|||++.+|+++||||||++||+.+.+.+.+.+.+...+ |+|+|++||+++++..||++++|++|++++.|+++++..
T Consensus 155 aral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 155 AGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999998766554443 899999999999987799999999999999999988764
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=338.19 Aligned_cols=201 Identities=25% Similarity=0.419 Sum_probs=167.3
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEe-----cCCCChhh-
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGID-----ISLLGLHD- 1340 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~d-----I~~i~l~~- 1340 (1479)
-++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 5899999999964 359999999999999999999999999999999999999999999999999 87776554
Q ss_pred ---hhcceEEEcCccc--ccc-ccHhhhcCC----CCCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCC
Q 000463 1341 ---LRSRFGIIPQEPV--LFE-GTVRSNIDP----IGQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWS 1406 (1479)
Q Consensus 1341 ---LR~~i~iIpQdp~--LF~-gTIR~NLdp----~~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1406 (1479)
.|+.++++||+|. ++. .|+++|+.. +.... ++++.++++..++.+ +.....+.+||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS 153 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTFS 153 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccCC
Confidence 3567999999984 333 478888741 22111 234455566655532 12334556899
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1407 VGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1407 gGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||||||++|||||+++|+||||||||++||+++.+.+.+.|++..+ +.|||+|||+++.+.+ ||+|++|++|+
T Consensus 154 ~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~ 229 (258)
T PRK11701 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGR 229 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 9999999999999999999999999999999999999999988653 7899999999999986 99999999985
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=318.44 Aligned_cols=166 Identities=33% Similarity=0.587 Sum_probs=151.3
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe------------EEE
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------TAY 712 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------iay 712 (1479)
++++|++++|+.. .+++++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|. ++|
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4689999999642 236999999999999999999999999999999999999999999999883 799
Q ss_pred EeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEE
Q 000463 713 VAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYL 792 (1479)
Q Consensus 713 v~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ill 792 (1479)
++|++++++.|++||+ +.+||||||||++||||++.+|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999889999998 56899999999999999999999999
Q ss_pred EeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEEEEec
Q 000463 793 LDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSG 850 (1479)
Q Consensus 793 LDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g 850 (1479)
|||||++||+++.+.+++.+.+. .+++|+|++||++++++.||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999998766544 4689999999999999889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=342.48 Aligned_cols=208 Identities=27% Similarity=0.440 Sum_probs=170.4
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC------------eEE
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------TTA 711 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------~ia 711 (1479)
.++++|+++.|.. ++.+|+||||++++|+++|++||||||||||+++|+|.++|++|+|.++| ++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 5788999999952 35799999999999999999999999999999999999999999999998 389
Q ss_pred EEeccCcC-CCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCE
Q 000463 712 YVAQTSWI-QNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDI 790 (1479)
Q Consensus 712 yv~Q~~~i-~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 790 (1479)
|+||+|-+ .+.|++||+.|-.......... .....++-++.+...+.. ..+..+||+|||||++||+||..+|++
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~--~~~~~~~~l~~~~L~~~~--~~~~~~lS~G~kqrl~ia~aL~~~P~l 157 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEE--AEERIEELLELFGLEDKA--NKKVRTLSGGMKQRLSIALALLHDPEL 157 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhH--HHHHHHHHHHHcCCchhh--CcchhhcCHHHHHHHHHHHHHhcCCCE
Confidence 99999875 4679999998743221110000 000112233333333311 466789999999999999999999999
Q ss_pred EEEeCccCCCChhhHHHHHHHHHhhhcCC-cEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 791 YLLDDVFSAVDAHTGSDIFKECVRGALKG-KTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 791 llLDep~saLD~~~~~~i~~~~~~~~~~~-~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
|+|||||++|||..+..+++.+.+...+| +||+++||.++.+.. ||+|++|++|+++..|+.+++..
T Consensus 158 liLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 158 LILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred EEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999998777766666 899999999999876 99999999999999999888654
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=310.09 Aligned_cols=206 Identities=25% Similarity=0.358 Sum_probs=166.5
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC------------eEEE
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------TTAY 712 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------~iay 712 (1479)
+++++++++|++ ...+++||||++++||+++|.|+|||||||+|++|.+++.|++|.|.++| ++|.
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 678999999964 34589999999999999999999999999999999999999999999987 4677
Q ss_pred EeccCcC-CCCcHHHHHhcCCC-CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCE
Q 000463 713 VAQTSWI-QNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDI 790 (1479)
Q Consensus 713 v~Q~~~i-~~~Tv~enI~fg~~-~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 790 (1479)
++-+.-+ ...|+||||.|-.. ++-.+-+-..+...+.+.+++. ..+..+..++|-|+||||+|||||.+||++
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~-----~~~~rRv~~~S~G~kqkV~iARAlvh~P~i 154 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLL-----EYLDRRVGEFSTGMKQKVAIARALVHDPSI 154 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChH-----HHHHHHHhhhchhhHHHHHHHHHHhcCCCe
Confidence 7755444 46799999986432 2111111111122233333322 234567889999999999999999999999
Q ss_pred EEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 791 YLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 791 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
|+||||+|+||..+.+.+.+.+.+....|++||+.||.+++++. ||+|+++++|+++..|+.+++..
T Consensus 155 ~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 155 LVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred EEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 99999999999999888876655555669999999999999985 99999999999999999988764
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=329.64 Aligned_cols=196 Identities=28% Similarity=0.404 Sum_probs=159.1
Q ss_pred EEEEeeEEEecCCC-CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC---------------
Q 000463 645 VEVRDGVFSWDDEN-GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------------- 708 (1479)
Q Consensus 645 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------- 708 (1479)
++++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68899999996322 24699999999999999999999999999999999999999999999876
Q ss_pred --eEEEEeccCcCC-CCcHHHHHhcCCC---CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHH
Q 000463 709 --TTAYVAQTSWIQ-NGTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLAR 782 (1479)
Q Consensus 709 --~iayv~Q~~~i~-~~Tv~enI~fg~~---~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 782 (1479)
.++|++|++.++ +.|++||+.++.. .+.....+ + ..+.++.+.. .......+.+|||||||||+|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~--~---~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE--R---AYEMLEKVGL--EHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH--H---HHHHHHHcCC--hhhhhCChhhCCHHHHHHHHHHH
Confidence 279999998776 5699999987532 11111111 1 1122333322 22345677899999999999999
Q ss_pred HHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCcccccCCEEEEEeCCEEE
Q 000463 783 AVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHNVDLILVMREGMIV 847 (1479)
Q Consensus 783 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~~D~i~~l~~G~i~ 847 (1479)
|++.+|+++||||||++||+++.+.+.+.+.+... .|+|+|++||+++++..+|++++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999876655444 489999999999998889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=340.53 Aligned_cols=208 Identities=24% Similarity=0.419 Sum_probs=168.0
Q ss_pred cEEEEeeEEEecCCC--CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe------------
Q 000463 644 AVEVRDGVFSWDDEN--GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------ 709 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------ 709 (1479)
.++++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 378999999996422 146999999999999999999999999999999999999999999998772
Q ss_pred -----EEEEeccC--cCCCCcHHHHHhcCCC---CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHH
Q 000463 710 -----TAYVAQTS--WIQNGTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQ 779 (1479)
Q Consensus 710 -----iayv~Q~~--~i~~~Tv~enI~fg~~---~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 779 (1479)
++|++|++ .+++.|++||+.++.. .+.+..++. ..+-++.+.... .....++.+||||||||++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALVGISE-SLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCCh-hhhhCCcccCCHHHHHHHH
Confidence 69999997 5677899999987532 111111111 112222222210 1235677899999999999
Q ss_pred HHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 780 LARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 780 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
||||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++++.. ||++++|++|++++.|+++++.+
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999987665554458999999999998865 89999999999999999888754
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=325.90 Aligned_cols=194 Identities=20% Similarity=0.357 Sum_probs=169.6
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ...|+++++
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 689999999964 35999999999999999999999999999999999999999999999999987654 456788999
Q ss_pred EcCcccccc-ccHhhhcCCCC----CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccC
Q 000463 1348 IPQEPVLFE-GTVRSNIDPIG----QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKH 1422 (1479)
Q Consensus 1348 IpQdp~LF~-gTIR~NLdp~~----~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~ 1422 (1479)
+||++.++. .|+++|+.... ...++++.++++..++.++.... ...||+|||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVP-----------VRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHHHHHHhcC
Confidence 999998876 59999996321 13457788899999997654332 246999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEE
Q 000463 1423 SRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVV 1475 (1479)
Q Consensus 1423 ~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL 1475 (1479)
|+||+|||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. .+|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999999864 47899999999999965 5788887
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=338.17 Aligned_cols=207 Identities=29% Similarity=0.465 Sum_probs=169.5
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------e
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------T 709 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~ 709 (1479)
..++++|+++.|++ +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 6 ~~l~~~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 47899999999953 235799999999999999999999999999999999999999999999887 2
Q ss_pred EEEEeccC--cCCCCcHHHHHhcCCC---CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHH
Q 000463 710 TAYVAQTS--WIQNGTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAV 784 (1479)
Q Consensus 710 iayv~Q~~--~i~~~Tv~enI~fg~~---~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 784 (1479)
++|++|+| .+++.|++||+.++.. ++.+..++ ...+-++.+.. ......++.+||||||||++||||+
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~laral 157 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKVGM--EDYLDKEPQNLSGGQKQRVAIASVL 157 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHcCC--HHHhhCCcccCCHHHHHHHHHHHHH
Confidence 79999998 4567899999988632 22221111 11122232221 1234567789999999999999999
Q ss_pred hcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHh
Q 000463 785 YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 785 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
+.+|+++||||||++||+.+.+.+++.+.+...+ ++|+|++||+++.+..||++++|++|++++.|+.+++..
T Consensus 158 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 158 ALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999998766655444 599999999999887899999999999999999887754
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=333.01 Aligned_cols=203 Identities=28% Similarity=0.417 Sum_probs=167.3
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC---------------e
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG---------------T 709 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g---------------~ 709 (1479)
++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~---~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEEC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 68899999995 24699999999999999999999999999999999999999999999887 2
Q ss_pred EEEEeccCcCC-CCcHHHHHhcCCC----CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHH
Q 000463 710 TAYVAQTSWIQ-NGTIEENILFGLP----MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAV 784 (1479)
Q Consensus 710 iayv~Q~~~i~-~~Tv~enI~fg~~----~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 784 (1479)
++|++|++.++ ..|++||+.++.. .+.....+ ...+.++.+ |.......++.+||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 79999998776 4799999988631 11111111 112223333 222334567789999999999999999
Q ss_pred hcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 785 YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 785 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
+.+|++++|||||++||+++.+.+.+.+.+...+|+|+|++||+++++.. ||++++|++|++++.|+++++.+
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 99999999999999999999999987655544468999999999999875 89999999999999999888754
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=376.31 Aligned_cols=94 Identities=26% Similarity=0.399 Sum_probs=85.2
Q ss_pred cccCCCccchHHHHHHHHHHHHhcCC--CEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEE
Q 000463 763 IGERGINLSGGQKQRIQLARAVYQDC--DIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILV 840 (1479)
Q Consensus 763 ig~~g~~LSGGQkqRv~LARAl~~~~--~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~ 840 (1479)
.+....+|||||||||+|||||.++| ++|||||||++||++..+.+++.+.+...+|+|||+|+|+++++..||+|++
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~ 562 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVD 562 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 46778899999999999999999997 9999999999999999999998766665679999999999999988999999
Q ss_pred E------eCCEEEEecChHHHH
Q 000463 841 M------REGMIVQSGRYNALL 856 (1479)
Q Consensus 841 l------~~G~i~~~g~~~~l~ 856 (1479)
| ++|+|+.+|+++++.
T Consensus 563 LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 563 IGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred eccccCCCCCEEeeccCHHHHh
Confidence 9 899999998877653
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=336.35 Aligned_cols=206 Identities=29% Similarity=0.401 Sum_probs=167.8
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcc-----cCCcEEEECC---------
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH-----KISGKVKVCG--------- 708 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~i~~~g--------- 708 (1479)
..++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|.++ |++|+|.++|
T Consensus 12 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 12 SKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred ceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 56899999999952 469999999999999999999999999999999999986 5899998876
Q ss_pred ------eEEEEeccCcCCCCcHHHHHhcCCCC----ChhhHHHHHHHhchHHHHHhcccC--CccccccCCCccchHHHH
Q 000463 709 ------TTAYVAQTSWIQNGTIEENILFGLPM----NRAKYGEVVRVCCLEKDLEMMEYG--DQTEIGERGINLSGGQKQ 776 (1479)
Q Consensus 709 ------~iayv~Q~~~i~~~Tv~enI~fg~~~----~~~~~~~v~~~~~l~~dl~~l~~g--d~t~ig~~g~~LSGGQkq 776 (1479)
.++|++|++.++..|++||+.++... +.+..++. ..+-++.+... .....++++.+|||||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDER-----VEWALTKAALWNEVKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHH-----HHHHHHHcCCChhhHHHHhcCCCCCCHHHHH
Confidence 37899999988889999999886421 11111111 11112222111 113356778899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHH
Q 000463 777 RIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNAL 855 (1479)
Q Consensus 777 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l 855 (1479)
|++||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL-KQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999988765544 457899999999999865 899999999999999998887
Q ss_pred Hh
Q 000463 856 LN 857 (1479)
Q Consensus 856 ~~ 857 (1479)
.+
T Consensus 243 ~~ 244 (260)
T PRK10744 243 FT 244 (260)
T ss_pred Hh
Confidence 64
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=338.89 Aligned_cols=211 Identities=28% Similarity=0.411 Sum_probs=169.1
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-------------E
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------T 710 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------i 710 (1479)
.++++|++++|++....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 589999999996433346999999999999999999999999999999999999999999999872 7
Q ss_pred EEEeccCc--CCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCC
Q 000463 711 AYVAQTSW--IQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDC 788 (1479)
Q Consensus 711 ayv~Q~~~--i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 788 (1479)
+|++|+|. ++..|+.|||.++........++..+. ...-++.+.. .......+.+||||||||++||||++.+|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~--~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~lAraL~~~p 159 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR--VDEALLAVNM--LDFKTREPARLSGGQKQRVAVAGIIALRP 159 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHH--HHHHHHHCCC--HhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999983 677899999987632110001111110 1111222211 11234567899999999999999999999
Q ss_pred CEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhc
Q 000463 789 DIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 789 ~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++++..||+|++|++|++++.|+++++...
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 160 EIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999998766555444 8999999999999888999999999999999999888653
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=339.42 Aligned_cols=206 Identities=25% Similarity=0.322 Sum_probs=168.7
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--------------
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------- 708 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------- 708 (1479)
..|+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRG---NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 4689999999995 35799999999999999999999999999999999999999999999886
Q ss_pred --eEEEEeccCcCCC-CcHHHHHhcCCC----CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHH
Q 000463 709 --TTAYVAQTSWIQN-GTIEENILFGLP----MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLA 781 (1479)
Q Consensus 709 --~iayv~Q~~~i~~-~Tv~enI~fg~~----~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 781 (1479)
.++|++|++.++. .|++||+.++.. .+....+ ....+-++.+... .....+..+|||||||||+||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qrv~la 155 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLH-----STVMMKLEAVGLR--GAAKLMPSELSGGMARRAALA 155 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHH
Confidence 2789999998876 599999987521 1111100 0112223333222 223456789999999999999
Q ss_pred HHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000463 782 RAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 782 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
||++.+|+++||||||++||+.+.+.+.+.+.+...+ |+|+|++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 156 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 156 RAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999988766554444 8999999999998875 899999999999999999988753
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=342.38 Aligned_cols=212 Identities=25% Similarity=0.364 Sum_probs=167.4
Q ss_pred ccEEEEeeEEEecCCC--CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC------------
Q 000463 643 IAVEVRDGVFSWDDEN--GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------ 708 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------ 708 (1479)
..|+++|++++|++.. ..++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4589999999996432 13599999999999999999999999999999999999999999998866
Q ss_pred ------eEEEEeccCc--CCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHH
Q 000463 709 ------TTAYVAQTSW--IQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQL 780 (1479)
Q Consensus 709 ------~iayv~Q~~~--i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 780 (1479)
.++|++|+|. +++.|++||+.|+........++..+. ..+-++.+... ....+..+.+||||||||++|
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~--~~~ll~~~~L~-~~~~~~~~~~LS~Gq~qrv~l 161 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK--VPELLKLVQLP-EDYVKRSPFELSGGQKRRVAL 161 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH--HHHHHHHcCCC-hhHhcCChhhCCHHHHHHHHH
Confidence 2699999984 566799999998642111011111111 11222222210 112356778999999999999
Q ss_pred HHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 781 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
|||++.+|+++||||||++||+.+++.+++.+.+... .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 162 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (289)
T PRK13645 162 AGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240 (289)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999998876555444 38999999999998764 89999999999999999888754
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=324.46 Aligned_cols=176 Identities=24% Similarity=0.381 Sum_probs=155.3
Q ss_pred cEEEEeeeeeecCC--CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccC--CCCccEEEEcCEecCCCChhhhh
Q 000463 1267 NVDLIDLQVRYRSN--TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLV--EPSGGRIIIDGIDISLLGLHDLR 1342 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~--~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~--~p~~G~I~IDG~dI~~i~l~~LR 1342 (1479)
.|+++|++++|+.+ .+++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 58999999999752 246999999999999999999999999999999999986 489999999999986 5678
Q ss_pred cceEEEcCccccccc-cHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhcc
Q 000463 1343 SRFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLK 1421 (1479)
Q Consensus 1343 ~~i~iIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1421 (1479)
++++++||+|.+|.+ |+++|+... ..++ +||||||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~---------~~~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFS---------ALLR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHH---------HHHh------------------------cCCHHHhHHHHHHHHHhc
Confidence 899999999988875 999998521 0000 699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhh-h-hhcCEEEEEeC-CC
Q 000463 1422 HSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPT-V-MDCDRVIVVDA-GL 1479 (1479)
Q Consensus 1422 ~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~t-i-~~~DrIlVL~~-G~ 1479 (1479)
+|++|+|||||+++|.++...+.+.|++.. +++|+|+|+|+++. + ..||||++|++ |+
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~ 187 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGK 187 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCe
Confidence 999999999999999999999999999864 47899999999984 4 55999999998 75
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=326.99 Aligned_cols=199 Identities=26% Similarity=0.382 Sum_probs=160.3
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC---------eEEEEec
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG---------TTAYVAQ 715 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g---------~iayv~Q 715 (1479)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|..+|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~---~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 46899999995 34799999999999999999999999999999999999999999999987 3899999
Q ss_pred cCcCCC-CcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEEEe
Q 000463 716 TSWIQN-GTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLD 794 (1479)
Q Consensus 716 ~~~i~~-~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLD 794 (1479)
++.++. .|++||+.++.........+.. ....+-++.+. .......+..+||||||||++||||++.+|+++|||
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~--~~~~~~l~~~~--l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllD 153 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEAR--RRIDEWLERLE--LSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILD 153 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHH--HHHHHHHHHcC--ChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 987765 6999999875321100000000 11122233332 223345677899999999999999999999999999
Q ss_pred CccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEec
Q 000463 795 DVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSG 850 (1479)
Q Consensus 795 ep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g 850 (1479)
|||++||+.+.+.+.+.+.+...+|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 154 EP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 154 EPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999987665554568999999999999865 8999999999998654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=333.17 Aligned_cols=187 Identities=29% Similarity=0.460 Sum_probs=166.0
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
-++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +.+++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4899999999974 3599999999999999999999999999999999999999999999987 35799
Q ss_pred EEcCcccccc---ccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCC
Q 000463 1347 IIPQEPVLFE---GTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHS 1423 (1479)
Q Consensus 1347 iIpQdp~LF~---gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1423 (1479)
++||+|.++. .|+++|+......+++++.++++.+++.+.....+ ..||+|||||++||||++++|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPM-----------QKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCCh-----------hhCCHHHHHHHHHHHHHhcCC
Confidence 9999998765 38999975433456788999999999987665432 468999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeC
Q 000463 1424 RLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDA 1477 (1479)
Q Consensus 1424 ~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~ 1477 (1479)
++|+|||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~ 196 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH 196 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC
Confidence 99999999999999999999999988643 7899999999999976 999999965
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=324.43 Aligned_cols=182 Identities=23% Similarity=0.331 Sum_probs=147.9
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.+-+.||+|.|+... +.+++++|-|.--.+|+||||+|-|||||+++|.|-++|+.|..+=+ -|-+||
T Consensus 586 vLGlH~VtFgy~gqk-pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~iG 653 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQK-PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRIG 653 (807)
T ss_pred eeecccccccCCCCC-chhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeeee
Confidence 467899999998654 58999999999999999999999999999999999999999976543 356789
Q ss_pred EEcCccc--c-ccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCC
Q 000463 1347 IIPQEPV--L-FEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHS 1423 (1479)
Q Consensus 1347 iIpQdp~--L-F~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1423 (1479)
..-|... | -+.|--+.|.-.-+..-++-+.+|...||........ -..||||||-|++||-.-|+.|
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTik----------ikdLSGGQKaRValaeLal~~P 723 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIK----------IKDLSGGQKARVALAELALGGP 723 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEe----------eeecCCcchHHHHHHHHhcCCC
Confidence 8888763 2 2336666654333456677788888888865433221 1359999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHcCCcEEEEEccChhhhhh--cCEE
Q 000463 1424 RLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMD--CDRV 1472 (1479)
Q Consensus 1424 ~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~~~TvI~IAHRl~ti~~--~DrI 1472 (1479)
+||||||||.+||.++-..+-++|++. +..||+|+|+-..|.. |.--
T Consensus 724 DvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~Lw 772 (807)
T KOG0066|consen 724 DVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLW 772 (807)
T ss_pred CEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEE
Confidence 999999999999999999999999985 5679999999888865 5433
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=337.66 Aligned_cols=203 Identities=27% Similarity=0.439 Sum_probs=169.4
Q ss_pred cEEEEeeeeeecCC-------CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChh
Q 000463 1267 NVDLIDLQVRYRSN-------TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLH 1339 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~-------~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~ 1339 (1479)
-|+++||+++|+.+ .+++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38899999999741 34699999999999999999999999999999999999999999999999999887653
Q ss_pred ---hhhcceEEEcCccc--cc-cccHhhhcCC-C---CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCC
Q 000463 1340 ---DLRSRFGIIPQEPV--LF-EGTVRSNIDP-I---GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNW 1405 (1479)
Q Consensus 1340 ---~LR~~i~iIpQdp~--LF-~gTIR~NLdp-~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1405 (1479)
.+|++++++||++. ++ ..|+++|+.. . ...+ ++.+.++++..++... ........|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDS----------VLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChh----------HhhCCCccC
Confidence 46889999999983 43 4699999742 1 1111 2245566666655321 122345579
Q ss_pred CchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1406 SVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1406 SgGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|+|||||++|||||+++|+||||||||++||.++...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|+
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~ 229 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQ 229 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999998653 7899999999999986 99999999985
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=338.04 Aligned_cols=209 Identities=26% Similarity=0.373 Sum_probs=169.7
Q ss_pred ccEEEEeeEEEecCCC---CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-----------
Q 000463 643 IAVEVRDGVFSWDDEN---GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG----------- 708 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~---~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g----------- 708 (1479)
..++++|++++|+... ++++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 3689999999996422 34799999999999999999999999999999999999999999999886
Q ss_pred ---eEEEEeccCc--CCCCcHHHHHhcCCCC---ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHH
Q 000463 709 ---TTAYVAQTSW--IQNGTIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQL 780 (1479)
Q Consensus 709 ---~iayv~Q~~~--i~~~Tv~enI~fg~~~---~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 780 (1479)
.++|++|+|. ++..|+.||+.|+... +....++. ..+-++.+ |..........+||||||||++|
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~l 155 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER-----VDESLKKV--GMYEYRRHAPHLLSGGQKQRVAI 155 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHH-----HHHHHHHC--CCHhHhhCCcccCCHHHHHHHHH
Confidence 2689999984 5567999999987421 11111111 11122222 11223456778999999999999
Q ss_pred HHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHhc
Q 000463 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 781 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
|||++.+|+++||||||++||+.+++.+.+.+.+... +|+|+|++||+++++..||++++|++|++++.|+++++...
T Consensus 156 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 156 AGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999876555444 48999999999999877999999999999999999888653
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=336.54 Aligned_cols=211 Identities=24% Similarity=0.359 Sum_probs=167.9
Q ss_pred CCccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCccc-----CCcEEEECC-------
Q 000463 641 DNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK-----ISGKVKVCG------- 708 (1479)
Q Consensus 641 ~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~i~~~g------- 708 (1479)
++..|+++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 16 ~~~~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 16 TEIKMRARDVSVFYG---EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCceEEEEeEEEEEC---CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 345799999999995 34799999999999999999999999999999999999974 899999877
Q ss_pred --------eEEEEeccCcCCCCcHHHHHhcCCCCChh--hHHHHHHHhchHHHHHhcccCC--ccccccCCCccchHHHH
Q 000463 709 --------TTAYVAQTSWIQNGTIEENILFGLPMNRA--KYGEVVRVCCLEKDLEMMEYGD--QTEIGERGINLSGGQKQ 776 (1479)
Q Consensus 709 --------~iayv~Q~~~i~~~Tv~enI~fg~~~~~~--~~~~v~~~~~l~~dl~~l~~gd--~t~ig~~g~~LSGGQkq 776 (1479)
.++|++|++.++..|++||+.++...... ...+..+ ...+-++.+...+ ....++.+.+|||||||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 170 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDE--IVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQ 170 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHH--HHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 26999999988888999999886321100 0000000 0111122222111 12345678899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHH
Q 000463 777 RIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNAL 855 (1479)
Q Consensus 777 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l 855 (1479)
|++||||++.+|+++||||||++||+.+.+.+.+.+.+ ..+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 171 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~-l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDE-LRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHH-HhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999988865544 3457899999999999865 899999999999999998887
Q ss_pred Hh
Q 000463 856 LN 857 (1479)
Q Consensus 856 ~~ 857 (1479)
..
T Consensus 250 ~~ 251 (267)
T PRK14235 250 FT 251 (267)
T ss_pred Hh
Confidence 64
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=335.71 Aligned_cols=205 Identities=27% Similarity=0.387 Sum_probs=168.4
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--------------
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------- 708 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------- 708 (1479)
+.++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 4689999999995 35799999999999999999999999999999999999999999998876
Q ss_pred ------------eEEEEeccCcCCC-CcHHHHHhcCCC----CChhhHHHHHHHhchHHHHHhcccCCcccc-ccCCCcc
Q 000463 709 ------------TTAYVAQTSWIQN-GTIEENILFGLP----MNRAKYGEVVRVCCLEKDLEMMEYGDQTEI-GERGINL 770 (1479)
Q Consensus 709 ------------~iayv~Q~~~i~~-~Tv~enI~fg~~----~~~~~~~~v~~~~~l~~dl~~l~~gd~t~i-g~~g~~L 770 (1479)
.++|++|++.++. .|++||+.++.. .+....++ ...+-++.+... ... +..+.+|
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~--~~~~~~~~~~L 153 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE-----RAVKYLAKVGID--ERAQGKYPVHL 153 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHHcCCC--hhhhhCCcccC
Confidence 2799999998875 699999987421 11111111 112223333222 122 4667899
Q ss_pred chHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEe
Q 000463 771 SGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQS 849 (1479)
Q Consensus 771 SGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~ 849 (1479)
|||||||++||||++++|+++||||||++||+.+.+.+++.+.+...+|+|+|+|||+++++.. ||+|++|++|++++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999987655544468999999999999886 899999999999999
Q ss_pred cChHHHHh
Q 000463 850 GRYNALLN 857 (1479)
Q Consensus 850 g~~~~l~~ 857 (1479)
|+++++..
T Consensus 234 ~~~~~~~~ 241 (257)
T PRK10619 234 GAPEQLFG 241 (257)
T ss_pred CCHHHhhh
Confidence 99888754
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=348.98 Aligned_cols=192 Identities=33% Similarity=0.437 Sum_probs=160.0
Q ss_pred cccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC---------------------eEEEEeccCc
Q 000463 660 EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG---------------------TTAYVAQTSW 718 (1479)
Q Consensus 660 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g---------------------~iayv~Q~~~ 718 (1479)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|++|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 4689999999999999999999999999999999999999999999987 2899999998
Q ss_pred CCC-CcHHHHHhcCCCCC---hhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEEEe
Q 000463 719 IQN-GTIEENILFGLPMN---RAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLD 794 (1479)
Q Consensus 719 i~~-~Tv~enI~fg~~~~---~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLD 794 (1479)
+++ .|++||+.++.... ....+ ....+.++.+.. .......+.+|||||||||+|||||+.+|+|+|||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~-----~~a~e~le~vgL--~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERR-----KRVDEQLELVGL--AQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 875 79999999875321 11111 111222333322 12234567899999999999999999999999999
Q ss_pred CccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHHhc
Q 000463 795 DVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 795 ep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
||||+||+.+++.+++.+.+...+ ++|+|+||||++++. .+|+|++|++|++++.|+++++...
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999877765544 899999999999975 5999999999999999999998754
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=335.78 Aligned_cols=210 Identities=24% Similarity=0.377 Sum_probs=168.8
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-------------
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------- 709 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------- 709 (1479)
..++++|+++.|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 6 SIIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred ceEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 468999999999642 246899999999999999999999999999999999999999999999882
Q ss_pred EEEEeccCc--CCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcC
Q 000463 710 TAYVAQTSW--IQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD 787 (1479)
Q Consensus 710 iayv~Q~~~--i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 787 (1479)
++|++|+|. +++.|+++|+.++........++..+ .+.+-++.+... .....++.+||||||||++||||++.+
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~~ 160 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR--RVSEALKQVDML--ERADYEPNALSGGQKQRVAIAGVLALN 160 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHH--HHHHHHHHcCCc--hhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 799999985 55679999998874321111111110 011112222221 123456789999999999999999999
Q ss_pred CCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCcccccCCEEEEEeCCEEEEecChHHHHh
Q 000463 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 788 ~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
|+++||||||++||+.+.+.+++.+.+...+ |+|+|++||+++++..||+|++|++|++++.|+++++.+
T Consensus 161 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 161 PSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999998766554443 899999999999987799999999999999999888764
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=309.46 Aligned_cols=207 Identities=22% Similarity=0.381 Sum_probs=174.4
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe--------------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------- 709 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------- 709 (1479)
.+..+|+.++|. .+++++|+||++++||+|++.||||+||||.+.++.|+++|++|+|.++|.
T Consensus 4 ~L~a~~l~K~y~---kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYK---KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhC---CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 577889999995 468999999999999999999999999999999999999999999999983
Q ss_pred EEEEeccCcCCC-CcHHHHHhcCCCCCh-hhH--HHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHh
Q 000463 710 TAYVAQTSWIQN-GTIEENILFGLPMNR-AKY--GEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVY 785 (1479)
Q Consensus 710 iayv~Q~~~i~~-~Tv~enI~fg~~~~~-~~~--~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 785 (1479)
+||+||+|-+|. .||+|||.--.++.+ ++. ++..+..+|.+++..... -..++.+||||||+|+.|||||.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hl-----r~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHL-----RDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHH-----hcCcccccccchHHHHHHHHHHh
Confidence 799999999996 599999987665433 222 222233345555543322 34578999999999999999999
Q ss_pred cCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcc-cccCCEEEEEeCCEEEEecChHHHHhc
Q 000463 786 QDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDF-LHNVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 786 ~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~-l~~~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
.+|+.+||||||+++||-+...|-+.+.....+|-.|+++-|++.+ +.-|||.+++.+|++..+|+++|+.++
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 9999999999999999999999965544555679999999999876 677999999999999999999998764
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=334.55 Aligned_cols=207 Identities=29% Similarity=0.407 Sum_probs=167.2
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC---------------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------------- 708 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------- 708 (1479)
.++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 4889999999952 4699999999999999999999999999999999999999999998765
Q ss_pred ------eEEEEeccCcCCC-CcHHHHHhcCCC-CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHH
Q 000463 709 ------TTAYVAQTSWIQN-GTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQL 780 (1479)
Q Consensus 709 ------~iayv~Q~~~i~~-~Tv~enI~fg~~-~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 780 (1479)
.++|++|++.++. .|++||+.++.. ......++..+ ...+.++.+.. ......++.+|||||||||+|
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~~l~~~gl--~~~~~~~~~~LS~Gq~qrv~l 155 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA--RARELLAKVGL--AGKETSYPRRLSGGQQQRVAI 155 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHcCC--cchhhCChhhCChHHHHHHHH
Confidence 3799999987764 799999987521 11000011101 11222333322 223456788999999999999
Q ss_pred HHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 781 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
|||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++++.. ||++++|++|++++.|+.+++.+
T Consensus 156 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 156 ARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999987655544568999999999999865 89999999999999999988764
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=333.49 Aligned_cols=204 Identities=23% Similarity=0.363 Sum_probs=166.4
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-------------E
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------T 710 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------i 710 (1479)
.++++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 2 TLRTENLTVGYG---TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEEeEEEEEC---CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 478999999995 357999999999999999999999999999999999999999999999872 7
Q ss_pred EEEeccCcCCC-CcHHHHHhcCCC-C----C--hhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHH
Q 000463 711 AYVAQTSWIQN-GTIEENILFGLP-M----N--RAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLAR 782 (1479)
Q Consensus 711 ayv~Q~~~i~~-~Tv~enI~fg~~-~----~--~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 782 (1479)
+|++|++.++. .|++||+.++.. . . .....+ ...+-++.+.. .......+..||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~lar 151 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNA-----RVNQAMEQTRI--NHLADRRLTDLSGGQRQRAFLAM 151 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHH-----HHHHHHHHcCC--HHHHcCCcccCCHHHHHHHHHHH
Confidence 99999987765 499999998631 1 1 111111 01111222211 12234677899999999999999
Q ss_pred HHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 783 AVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 783 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
|++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++.+.. +|++++|++|+++..|+++++..
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999887665544468999999999999865 89999999999999999888754
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=333.75 Aligned_cols=210 Identities=19% Similarity=0.309 Sum_probs=169.4
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-------------
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------- 709 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------- 709 (1479)
..++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (255)
T PRK11300 4 PLLSVSGLMMRFG---GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM 80 (255)
T ss_pred ceEEEeeEEEEEC---CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhc
Confidence 3689999999995 357999999999999999999999999999999999999999999999873
Q ss_pred -EEEEeccCcCCC-CcHHHHHhcCCCC-----------ChhhHH--HHHHHhchHHHHHhcccCCccccccCCCccchHH
Q 000463 710 -TAYVAQTSWIQN-GTIEENILFGLPM-----------NRAKYG--EVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQ 774 (1479)
Q Consensus 710 -iayv~Q~~~i~~-~Tv~enI~fg~~~-----------~~~~~~--~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 774 (1479)
++|++|++.++. .|++||+.++... +...+. +........+.++.+. .......++.+|||||
T Consensus 81 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--l~~~~~~~~~~LS~G~ 158 (255)
T PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVG--LLEHANRQAGNLAYGQ 158 (255)
T ss_pred CeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCC--hhhhhhCChhhCCHHH
Confidence 688999998876 5999999986310 000000 0000011122233332 2234567888999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCccccc-CCEEEEEeCCEEEEecCh
Q 000463 775 KQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRY 852 (1479)
Q Consensus 775 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~ 852 (1479)
|||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ |+|+|++||+++++.. ||++++|++|++++.|+.
T Consensus 159 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~ 238 (255)
T PRK11300 159 QRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTP 238 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCH
Confidence 99999999999999999999999999999999998766655444 8999999999999865 899999999999999998
Q ss_pred HHHHh
Q 000463 853 NALLN 857 (1479)
Q Consensus 853 ~~l~~ 857 (1479)
+++.+
T Consensus 239 ~~~~~ 243 (255)
T PRK11300 239 EEIRN 243 (255)
T ss_pred HHHhh
Confidence 87753
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=332.30 Aligned_cols=207 Identities=28% Similarity=0.398 Sum_probs=166.8
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-------------E
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------T 710 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------i 710 (1479)
.++++|+++.|++ +++|+|+||++++|++++|+|+||||||||+++|+|+.+|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 4789999999953 46999999999999999999999999999999999999999999999873 7
Q ss_pred EEEeccCcC-CCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHh----
Q 000463 711 AYVAQTSWI-QNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVY---- 785 (1479)
Q Consensus 711 ayv~Q~~~i-~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~---- 785 (1479)
+|++|++.+ ++.|++||+.++........++..+ ...+-++.+.. .........+|||||||||+||||++
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~l~~~~l--~~~~~~~~~~LSgGe~qrv~la~al~~~~~ 154 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDA--LVAAALAQVDL--AHLAGRDYPQLSGGEQQRVQLARVLAQLWE 154 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHH--HHHHHHHHcCC--HhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 899999876 6789999998864211100000000 01122222222 12234567899999999999999999
Q ss_pred --cCCCEEEEeCccCCCChhhHHHHHHHHHhhh-cCCcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHHh
Q 000463 786 --QDCDIYLLDDVFSAVDAHTGSDIFKECVRGA-LKGKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 786 --~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
.+|+++||||||++||+.+.+++.+.+.+.. .+|+|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 155 ~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 155 PDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred cCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 5999999999999999999999887665544 46899999999999987 599999999999999999888754
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=323.54 Aligned_cols=209 Identities=29% Similarity=0.441 Sum_probs=171.7
Q ss_pred ccEEEEeeEEEecCCCC---------------------cccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCC
Q 000463 643 IAVEVRDGVFSWDDENG---------------------EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKIS 701 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~---------------------~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~ 701 (1479)
..|+++|+++-+..+.. ..-++|+||+|++||+..|.|-+|||||||++++.++++|++
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 35788888887754211 124789999999999999999999999999999999999999
Q ss_pred cEEEECC-----------------eEEEEeccC-cCCCCcHHHHHhcCCCCC----hhhHHHHHHHhchHHHHHhcccCC
Q 000463 702 GKVKVCG-----------------TTAYVAQTS-WIQNGTIEENILFGLPMN----RAKYGEVVRVCCLEKDLEMMEYGD 759 (1479)
Q Consensus 702 G~i~~~g-----------------~iayv~Q~~-~i~~~Tv~enI~fg~~~~----~~~~~~v~~~~~l~~dl~~l~~gd 759 (1479)
|+|.++| ++++|+|+- .+++.||.||+.||.+.. +++.+++.+ .++.. |.
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~------~l~~V--gL 154 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALE------ALELV--GL 154 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHH------HHHHc--Cc
Confidence 9999998 379999985 456789999999998753 233332222 23322 22
Q ss_pred ccccccCCCccchHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCccc-ccCCE
Q 000463 760 QTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFL-HNVDL 837 (1479)
Q Consensus 760 ~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l-~~~D~ 837 (1479)
.-.-...+.+||||+||||.|||||..||||+|+|||||||||--+.++-+++++...+ +||+|+||||+++. +-.||
T Consensus 155 ~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~r 234 (386)
T COG4175 155 EGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDR 234 (386)
T ss_pred hhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccce
Confidence 22223578899999999999999999999999999999999999999998888876544 89999999999985 55899
Q ss_pred EEEEeCCEEEEecChHHHHhcC
Q 000463 838 ILVMREGMIVQSGRYNALLNSG 859 (1479)
Q Consensus 838 i~~l~~G~i~~~g~~~~l~~~~ 859 (1479)
|.+|+||+|++.|+++|++.+.
T Consensus 235 IaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 235 IAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred EEEecCCeEEEeCCHHHHHcCc
Confidence 9999999999999999998653
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=334.04 Aligned_cols=206 Identities=26% Similarity=0.404 Sum_probs=166.5
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcc--c---CCcEEEECCe--------
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH--K---ISGKVKVCGT-------- 709 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~--~---~~G~i~~~g~-------- 709 (1479)
..++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.
T Consensus 11 ~~l~i~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 11 EVYQINGMNLWYG---QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred ceEEEeeEEEEEC---CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 4689999999995 2469999999999999999999999999999999999987 3 6999988762
Q ss_pred -------EEEEeccCcCCCCcHHHHHhcCCCCC----hhhHHHHHHHhchHHHHHhcccCC--ccccccCCCccchHHHH
Q 000463 710 -------TAYVAQTSWIQNGTIEENILFGLPMN----RAKYGEVVRVCCLEKDLEMMEYGD--QTEIGERGINLSGGQKQ 776 (1479)
Q Consensus 710 -------iayv~Q~~~i~~~Tv~enI~fg~~~~----~~~~~~v~~~~~l~~dl~~l~~gd--~t~ig~~g~~LSGGQkq 776 (1479)
++|++|++.+++.|++||+.++.... ++...+. ..+-++.+...+ ......++.+|||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEI-----VEKSLKDVALWDEVKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHH-----HHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 78999999988889999998864221 1111111 111122221111 12345678899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHH
Q 000463 777 RIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNAL 855 (1479)
Q Consensus 777 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l 855 (1479)
|++||||++.+|+++||||||++||++++..+.+.+.+ ..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILK-LKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH-HhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999988765444 4457999999999999865 899999999999999999987
Q ss_pred Hh
Q 000463 856 LN 857 (1479)
Q Consensus 856 ~~ 857 (1479)
.+
T Consensus 242 ~~ 243 (259)
T PRK14274 242 FS 243 (259)
T ss_pred hh
Confidence 64
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=328.09 Aligned_cols=200 Identities=28% Similarity=0.352 Sum_probs=160.7
Q ss_pred ccEEEEeeEEEecCCCC-cccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------
Q 000463 643 IAVEVRDGVFSWDDENG-EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------- 708 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------- 708 (1479)
..++++|++++|++... .++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 36899999999964222 3599999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEeccCcCCC-CcHHHHHhcCCCC---ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHH
Q 000463 709 ----TTAYVAQTSWIQN-GTIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQL 780 (1479)
Q Consensus 709 ----~iayv~Q~~~i~~-~Tv~enI~fg~~~---~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 780 (1479)
.++|++|++.++. .|++||+.++..+ +....+ ....+-++.+... ........+||||||||++|
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~--~~~~~~~~~LS~Ge~qrl~l 157 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSR-----NGAKALLEQLGLG--KRLDHLPAQLSGGEQQRVAL 157 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCCH--hHhhCChhhCCHHHHHHHHH
Confidence 3799999987765 6999999875321 111111 0112223333221 12345677999999999999
Q ss_pred HHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCcccccCCEEEEEeCCEEEEe
Q 000463 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHNVDLILVMREGMIVQS 849 (1479)
Q Consensus 781 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~~D~i~~l~~G~i~~~ 849 (1479)
|||++.+|+++||||||++||+.+.+.+++.+.+...+ |+|+|++||+++++..||++++|++|++++.
T Consensus 158 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 158 ARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999998766555443 8999999999999878999999999999753
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=350.62 Aligned_cols=191 Identities=30% Similarity=0.427 Sum_probs=158.4
Q ss_pred ccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-----------------eEEEEeccCcCC-CC
Q 000463 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-----------------TTAYVAQTSWIQ-NG 722 (1479)
Q Consensus 661 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-----------------~iayv~Q~~~i~-~~ 722 (1479)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++ +.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 479999999999999999999999999999999999999999999876 379999999877 46
Q ss_pred cHHHHHhcCCCC---ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEEEeCccCC
Q 000463 723 TIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSA 799 (1479)
Q Consensus 723 Tv~enI~fg~~~---~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~sa 799 (1479)
|++|||.++... +.+..++ ...+-++.+.. .........+|||||||||+||||++.+|+++||||||++
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~-----~~~e~L~~~gL--~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~ 194 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERRE-----KALDALRQVGL--ENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA 194 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCC--ChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 999999986432 1111111 11222333322 2234567789999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhhhc-CCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000463 800 VDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 800 LD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
||+.+++.+.+.+.+... .|+|+|++||+++++.. ||+|++|++|++++.|+++++...
T Consensus 195 LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 195 LDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999877665544 48999999999998764 899999999999999999998764
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=324.33 Aligned_cols=196 Identities=23% Similarity=0.314 Sum_probs=168.8
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceE
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
-++++|++++|+. .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 5999999999964 3599999999999999999999999999999999999999999999999998752 3466799
Q ss_pred EEcCccccccc-cHhhhcCCC----CCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhcc
Q 000463 1347 IIPQEPVLFEG-TVRSNIDPI----GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLK 1421 (1479)
Q Consensus 1347 iIpQdp~LF~g-TIR~NLdp~----~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1421 (1479)
++||+|.+|.+ |+++|+... +...++.+.++++..++.+.. +..+ .+||+|||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYE-------DTLV----RQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhc-------cCCh----hhCCHHHHHHHHHHHHHhc
Confidence 99999999987 999998521 222345567788888775443 3333 4699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCC
Q 000463 1422 HSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAG 1478 (1479)
Q Consensus 1422 ~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G 1478 (1479)
+|+||+|||||++||.++.+.+.+.|++.. +++|+|++||+++.+.+ |||+++++..
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~~ 213 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEAA 213 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEeec
Confidence 999999999999999999999999998754 46899999999999977 9999999753
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=335.19 Aligned_cols=211 Identities=24% Similarity=0.315 Sum_probs=167.4
Q ss_pred CccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcc-----cCCcEEEECC--------
Q 000463 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH-----KISGKVKVCG-------- 708 (1479)
Q Consensus 642 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~i~~~g-------- 708 (1479)
+..++++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 19 ~~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 19 EHILEVKDLSIYYG---EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred CceEEEEEEEEEeC---CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 35799999999995 3469999999999999999999999999999999999864 6899998875
Q ss_pred -------eEEEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccC--CccccccCCCccchHHHHHHH
Q 000463 709 -------TTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYG--DQTEIGERGINLSGGQKQRIQ 779 (1479)
Q Consensus 709 -------~iayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~g--d~t~ig~~g~~LSGGQkqRv~ 779 (1479)
.++|++|++.+++.|++||+.++............+. ...+.++.+... .....+.++.+||||||||++
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~ 174 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDE-IVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLC 174 (268)
T ss_pred cHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHH
Confidence 3799999999888899999987642211111111110 011112222111 112345678899999999999
Q ss_pred HHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 780 LARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 780 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++++.. ||++++|++|++++.|+++++.+
T Consensus 175 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 252 (268)
T PRK14248 175 IARTLAMKPAVLLLDEPASALDPISNAKIEELITEL-KEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFT 252 (268)
T ss_pred HHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999987655444 457899999999998764 89999999999999999888764
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=328.85 Aligned_cols=205 Identities=23% Similarity=0.349 Sum_probs=167.3
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe--------------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------- 709 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------- 709 (1479)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|..+|++|+|.++|.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYG---KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeC---CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 589999999995 357999999999999999999999999999999999999999999998872
Q ss_pred EEEEeccCcCCC-CcHHHHHhcCCCC-ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcC
Q 000463 710 TAYVAQTSWIQN-GTIEENILFGLPM-NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD 787 (1479)
Q Consensus 710 iayv~Q~~~i~~-~Tv~enI~fg~~~-~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 787 (1479)
++|++|++.++. .|++||+.++... +....++.+ .+-++.++..+. .......+||||||||++||||++.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFPRLHE-RRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHHHHHH-HHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 789999988776 5999999886432 111111111 111222211111 12346779999999999999999999
Q ss_pred CCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHHh
Q 000463 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 788 ~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++++. .||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999998766655556899999999999875 489999999999999999988753
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=330.76 Aligned_cols=202 Identities=31% Similarity=0.468 Sum_probs=164.5
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--------------eE
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------------TT 710 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------~i 710 (1479)
++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 468999999952 4799999999999999999999999999999999999999999999886 27
Q ss_pred EEEeccCcCCC-CcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCC
Q 000463 711 AYVAQTSWIQN-GTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCD 789 (1479)
Q Consensus 711 ayv~Q~~~i~~-~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 789 (1479)
+|++|++.++. .|++||+.++.........+.. .+-++.++ +......++..+||||||||++||||++.+|+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIP-----DEIYELFP-VLKEMLGRRGGDLSGGQQQQLAIARALVTRPK 151 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHH-----HHHHHHHH-hHHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999998775 4999999876432111111111 11112211 11122356778999999999999999999999
Q ss_pred EEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHH
Q 000463 790 IYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNAL 855 (1479)
Q Consensus 790 illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l 855 (1479)
++||||||++||+.+.+.+.+.+.+...+ |+|+|++||+++++.. ||+++++++|++++.|+.+++
T Consensus 152 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 152 LLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999998766655443 8999999999999885 899999999999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=349.40 Aligned_cols=193 Identities=28% Similarity=0.442 Sum_probs=166.8
Q ss_pred eeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCC----hhhhhcceEE
Q 000463 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG----LHDLRSRFGI 1347 (1479)
Q Consensus 1272 nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~----l~~LR~~i~i 1347 (1479)
|++++|.. . .+ |+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ....|+++++
T Consensus 4 ~l~~~~~~--~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGD--F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECC--E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 78999964 2 35 999999999999999999999999999999999999999999999987542 3456889999
Q ss_pred EcCccccccc-cHhhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhcc
Q 000463 1348 IPQEPVLFEG-TVRSNIDPI-GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLK 1421 (1479)
Q Consensus 1348 IpQdp~LF~g-TIR~NLdp~-~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr 1421 (1479)
+||++.+|.+ |+++|+... .... ++++.++++..++.+.....| .+||||||||++|||||++
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLP-----------GRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHHHHHc
Confidence 9999999976 999999632 1111 235778888888876655443 4689999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1422 HSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1422 ~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+|++|+|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999998654 7899999999999977 99999999995
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=331.04 Aligned_cols=207 Identities=18% Similarity=0.336 Sum_probs=167.7
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--------------e
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------------T 709 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------~ 709 (1479)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYK---GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 478999999995 35799999999999999999999999999999999999999999999887 2
Q ss_pred EEEEeccCcCCC-CcHHHHHhcCCCCChh-hHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcC
Q 000463 710 TAYVAQTSWIQN-GTIEENILFGLPMNRA-KYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD 787 (1479)
Q Consensus 710 iayv~Q~~~i~~-~Tv~enI~fg~~~~~~-~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 787 (1479)
++|++|++.++. .|++||+.++...... ..++.. ....+.++.+.. ......+..+||||||||++||||++.+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~--~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE--DRANELMEEFHI--EHLRDSMGQSLSGGERRRVEIARALAAN 155 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHH--HHHHHHHHHcCC--HHHhhcchhhCCHHHHHHHHHHHHHhcC
Confidence 799999987765 6999999876422110 000100 111223343322 2234567789999999999999999999
Q ss_pred CCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 788 ~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 156 PKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999998876554444468999999999988765 89999999999999999888754
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=311.43 Aligned_cols=162 Identities=28% Similarity=0.430 Sum_probs=146.5
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--eEEEEeccCcCCCC
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--TTAYVAQTSWIQNG 722 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--~iayv~Q~~~i~~~ 722 (1479)
|+++|++++|++ ++++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|++|++.+++.
T Consensus 1 i~~~~~~~~~~~--~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (166)
T cd03223 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLG 78 (166)
T ss_pred CEEEEEEEEcCC--CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccc
Confidence 468999999953 24699999999999999999999999999999999999999999999987 79999999998889
Q ss_pred cHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEEEeCccCCCCh
Q 000463 723 TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDA 802 (1479)
Q Consensus 723 Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~ 802 (1479)
|++||+.++ ++.+||||||||++||||++.+|+++||||||++||+
T Consensus 79 tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 79 TLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred cHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 999999864 3468999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCE
Q 000463 803 HTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGM 845 (1479)
Q Consensus 803 ~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~ 845 (1479)
++.+.+.+.+.+ . ++|+|++||+++....||++++|++|.
T Consensus 125 ~~~~~l~~~l~~-~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 125 ESEDRLYQLLKE-L--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHHHHHHH-h--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 999988865543 2 689999999998877799999998753
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=327.87 Aligned_cols=203 Identities=25% Similarity=0.379 Sum_probs=165.2
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------e
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------T 709 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~ 709 (1479)
..|+++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 6 ~~i~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 6 PLLQLQNVGYLAG---DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred ceEEEeccEEeeC---CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 4699999999995 34799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCC
Q 000463 710 TAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCD 789 (1479)
Q Consensus 710 iayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 789 (1479)
++|++|++.+++.|++||+.++..+...... .....+.++.+... .+.....+.+|||||||||+||||++.+|+
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~----~~~~~~~l~~~~l~-~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPD----PAIFLDDLERFALP-DTILTKNIAELSGGEKQRISLIRNLQFMPK 157 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChH----HHHHHHHHHHcCCC-hHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 7999999998888999999875322111111 01122334444321 123467788999999999999999999999
Q ss_pred EEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCcccccCCEEEEEe-CCEEEEecChH
Q 000463 790 IYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHNVDLILVMR-EGMIVQSGRYN 853 (1479)
Q Consensus 790 illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~~D~i~~l~-~G~i~~~g~~~ 853 (1479)
++||||||++||+.+.+.+.+.+.+... +|+|+|++||++++++.||++++|+ ++..+++|+|+
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 158 VLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999988866555444 4899999999999998899999995 66677777764
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=336.19 Aligned_cols=196 Identities=24% Similarity=0.411 Sum_probs=165.5
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhh-cce
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLR-SRF 1345 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR-~~i 1345 (1479)
.++++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..+ +++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccceE
Confidence 58999999999633 459999999999999999999999999999999999999999999999999752 233 469
Q ss_pred EEEcCcccc---ccccHhhhcCCC--------C---CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHH
Q 000463 1346 GIIPQEPVL---FEGTVRSNIDPI--------G---QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411 (1479)
Q Consensus 1346 ~iIpQdp~L---F~gTIR~NLdp~--------~---~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQ 1411 (1479)
+++||+|.+ +..++++|+... . ...++++.++++..++.+.... .+ .+|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~~----~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR-------QI----GELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcC-------Cc----ccCCHHHHH
Confidence 999999965 456889997521 0 1123457788899988765433 22 369999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1412 rl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+++++ +|+
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~ 218 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGT 218 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCE
Confidence 9999999999999999999999999999999999999864 47899999999999866 9999777 674
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=333.55 Aligned_cols=206 Identities=26% Similarity=0.363 Sum_probs=167.2
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCccc-----CCcEEEECC---------
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK-----ISGKVKVCG--------- 708 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~i~~~g--------- 708 (1479)
..++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|..+| ++|+|.++|
T Consensus 11 ~~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 4799999999995 34699999999999999999999999999999999999875 799998876
Q ss_pred ------eEEEEeccCcCCCCcHHHHHhcCCC---CChhhHHHHHHHhchHHHHHhcccCC--ccccccCCCccchHHHHH
Q 000463 709 ------TTAYVAQTSWIQNGTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGD--QTEIGERGINLSGGQKQR 777 (1479)
Q Consensus 709 ------~iayv~Q~~~i~~~Tv~enI~fg~~---~~~~~~~~v~~~~~l~~dl~~l~~gd--~t~ig~~g~~LSGGQkqR 777 (1479)
.++|++|++.++..|++||+.++.. .+.+..++. ..+-++.+...+ .....+++.+||||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGV-----VENALRSAALWDETSDRLKSPALSLSGGQQQR 162 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCCcchhhhhcCChhhCCHHHHHH
Confidence 2789999998888999999988632 111111110 111222221110 123456788999999999
Q ss_pred HHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHH
Q 000463 778 IQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALL 856 (1479)
Q Consensus 778 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~ 856 (1479)
|+||||++.+|+++||||||++||+.++..+.+.+.+. .+++|+|++||+++++.. ||++++|++|++++.|+++++.
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL-KKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999988655544 458999999999999865 8999999999999999998876
Q ss_pred h
Q 000463 857 N 857 (1479)
Q Consensus 857 ~ 857 (1479)
.
T Consensus 242 ~ 242 (258)
T PRK14268 242 H 242 (258)
T ss_pred c
Confidence 4
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=334.60 Aligned_cols=205 Identities=26% Similarity=0.386 Sum_probs=168.5
Q ss_pred CccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcc-----cCCcEEEECC--------
Q 000463 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH-----KISGKVKVCG-------- 708 (1479)
Q Consensus 642 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~i~~~g-------- 708 (1479)
...|+++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 18 ~~~l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYG---KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEEC---CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 45799999999995 3579999999999999999999999999999999999986 5899998876
Q ss_pred -------eEEEEeccCcCCCCcHHHHHhcCCCC----Chhh----HHHHHHHhchHHHHHhcccCCccccccCCCccchH
Q 000463 709 -------TTAYVAQTSWIQNGTIEENILFGLPM----NRAK----YGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGG 773 (1479)
Q Consensus 709 -------~iayv~Q~~~i~~~Tv~enI~fg~~~----~~~~----~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 773 (1479)
.++|++|++.++..|++||+.++... ++.. ..+.++..++.+++ ....++.+.+||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G 167 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGG 167 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHH
Confidence 27999999998888999999886321 1111 11112222221111 12356778899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecCh
Q 000463 774 QKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRY 852 (1479)
Q Consensus 774 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~ 852 (1479)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++++.. ||++++|++|++++.|++
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~ 246 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL-KKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKT 246 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999888755544 457999999999999864 999999999999999999
Q ss_pred HHHHh
Q 000463 853 NALLN 857 (1479)
Q Consensus 853 ~~l~~ 857 (1479)
+++..
T Consensus 247 ~~~~~ 251 (267)
T PRK14237 247 RNIFT 251 (267)
T ss_pred HHHhc
Confidence 88764
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=335.69 Aligned_cols=203 Identities=26% Similarity=0.385 Sum_probs=164.9
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC---------------e
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG---------------T 709 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g---------------~ 709 (1479)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 68999999995 24699999999999999999999999999999999999999999999876 2
Q ss_pred EEEEeccCc--CCCCcHHHHHhcCCC---CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHH
Q 000463 710 TAYVAQTSW--IQNGTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAV 784 (1479)
Q Consensus 710 iayv~Q~~~--i~~~Tv~enI~fg~~---~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 784 (1479)
++|++|++. ++..|+.||+.++.. .+.....+ ...+-++.+...+ .......+||||||||++||||+
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~--~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITR-----RVDEALTLVDAQH--FRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCHh--HhcCCchhCCHHHHHHHHHHHHH
Confidence 789999975 466789999987522 11111111 0111222222111 12456789999999999999999
Q ss_pred hcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 785 YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 785 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
+.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999987665554568999999999999865 99999999999999999888754
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=310.24 Aligned_cols=156 Identities=31% Similarity=0.579 Sum_probs=145.3
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChh-hhhcceE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLH-DLRSRFG 1346 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~-~LR~~i~ 1346 (1479)
++++|++++|+. .++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|++++
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 578999999964 3599999999999999999999999999999999999999999999999999888764 4678899
Q ss_pred EEcCccccccccHhhhcCCCCCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEE
Q 000463 1347 IIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLL 1426 (1479)
Q Consensus 1347 iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~IL 1426 (1479)
++|| ||+|||||++||||++++|++|
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 8999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1427 FMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1427 iLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+|||||++||.++.+.+.+.|++.. ++.|+|+++|+++.+.. |||+++|++|+
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~ 159 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGR 159 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999864 47899999999998876 99999999985
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=326.08 Aligned_cols=196 Identities=24% Similarity=0.388 Sum_probs=156.4
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe---------------
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT--------------- 709 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--------------- 709 (1479)
++++|+++.|++. +++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4688999999532 46999999999999999999999999999999999999999999998763
Q ss_pred -EEEEeccCcCCC-CcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcC
Q 000463 710 -TAYVAQTSWIQN-GTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD 787 (1479)
Q Consensus 710 -iayv~Q~~~i~~-~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 787 (1479)
++|++|++.++. .|++||+.++........++..+ .+.+-++.+.. .........+||||||||++||||++.+
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~--~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~ 154 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK--RVPAALELVGL--SHKHRALPAELSGGEQQRVAIARAIVNS 154 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHcCC--HHHhhCChhhcCHHHHHHHHHHHHHHcC
Confidence 799999987765 69999998763211000111100 11122222221 1123456679999999999999999999
Q ss_pred CCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEE
Q 000463 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMI 846 (1479)
Q Consensus 788 ~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i 846 (1479)
|+++||||||++||+++.+.+.+.+.+...+|+|+|++||+++++.. ||++++|++|++
T Consensus 155 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 155 PTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999987665554568999999999999875 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=335.52 Aligned_cols=209 Identities=26% Similarity=0.365 Sum_probs=168.0
Q ss_pred cEEEEeeEEEecCC------CCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC---------
Q 000463 644 AVEVRDGVFSWDDE------NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------- 708 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------- 708 (1479)
.++++|+++.|+.. .++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 47899999999632 135799999999999999999999999999999999999999999999877
Q ss_pred -------eEEEEeccCc--C-CCCcHHHHHhcCCC----CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHH
Q 000463 709 -------TTAYVAQTSW--I-QNGTIEENILFGLP----MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQ 774 (1479)
Q Consensus 709 -------~iayv~Q~~~--i-~~~Tv~enI~fg~~----~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 774 (1479)
.++|++|++. + +..|++||+.++.. ++....+ ....+-++.+... ....+.++.+|||||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~-~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQK-----ARIAELLDMVGLR-SEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCCC-hhhhhCChhhCCHHH
Confidence 2899999973 3 35799999976421 1111111 1112223333221 122456778999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCccccc-CCEEEEEeCCEEEEecCh
Q 000463 775 KQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRY 852 (1479)
Q Consensus 775 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~ 852 (1479)
||||+||||++++|+++||||||++||+.+.+.+.+.+.+...+ |+|+|++||+++.+.. ||++++|++|++++.|+.
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 99999999999999999999999999999999888766555443 8999999999999875 899999999999999999
Q ss_pred HHHHhc
Q 000463 853 NALLNS 858 (1479)
Q Consensus 853 ~~l~~~ 858 (1479)
+++...
T Consensus 236 ~~~~~~ 241 (265)
T TIGR02769 236 AQLLSF 241 (265)
T ss_pred HHHcCC
Confidence 998763
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=327.81 Aligned_cols=199 Identities=23% Similarity=0.378 Sum_probs=165.7
Q ss_pred EEEEeeeeeecC----C-CCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEc--C--EecCCCCh
Q 000463 1268 VDLIDLQVRYRS----N-TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIID--G--IDISLLGL 1338 (1479)
Q Consensus 1268 I~~~nvs~~Y~~----~-~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~ID--G--~dI~~i~l 1338 (1479)
++++|++++|+. + .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+| | +++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 689999999963 1 2469999999999999999999999999999999999999999999998 4 37766665
Q ss_pred hh---h-hcceEEEcCccccccc-cHhhhcCC-C--CCCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCC
Q 000463 1339 HD---L-RSRFGIIPQEPVLFEG-TVRSNIDP-I--GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWS 1406 (1479)
Q Consensus 1339 ~~---L-R~~i~iIpQdp~LF~g-TIR~NLdp-~--~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1406 (1479)
.. + +++++++||+|.+|.. |+++|+.. . .... ++++.++++..++.+..... ...+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHL----------PPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhC----------CcccCC
Confidence 54 3 4579999999988875 99999852 1 1122 35667788888776533221 245799
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh-cCEEEEEe
Q 000463 1407 VGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVD 1476 (1479)
Q Consensus 1407 gGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~-~DrIlVL~ 1476 (1479)
+|||||++|||||+++|++|+|||||++||+++.+.+.+.|++.. +++|+|+|+|+++.+.+ ||||+.+.
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 999999999999999999999999999999999999999999864 47899999999999875 99999863
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=334.42 Aligned_cols=210 Identities=25% Similarity=0.356 Sum_probs=166.7
Q ss_pred CccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------
Q 000463 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------- 708 (1479)
Q Consensus 642 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------- 708 (1479)
+..++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 9 ~~~l~i~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (265)
T PRK10575 9 DTTFALRNVSFRVP---GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85 (265)
T ss_pred CceEEEeeEEEEEC---CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhh
Confidence 35799999999995 24799999999999999999999999999999999999999999999987
Q ss_pred eEEEEeccCcC-CCCcHHHHHhcCCC-CCh--hhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHH
Q 000463 709 TTAYVAQTSWI-QNGTIEENILFGLP-MNR--AKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAV 784 (1479)
Q Consensus 709 ~iayv~Q~~~i-~~~Tv~enI~fg~~-~~~--~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 784 (1479)
.++|++|++-+ +..|++||+.++.. ... ....... ......-++.+.. ...+.....+|||||||||+||||+
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~laral 162 (265)
T PRK10575 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAAD-REKVEEAISLVGL--KPLAHRLVDSLSGGERQRAWIAMLV 162 (265)
T ss_pred heEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHH-HHHHHHHHHHcCC--HHHhcCCcccCCHHHHHHHHHHHHH
Confidence 27999999755 45699999998632 100 0000000 0011122222221 1134456779999999999999999
Q ss_pred hcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHHh
Q 000463 785 YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 785 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
+.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++++. .||+|++|++|++++.|+.+++..
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 9999999999999999999999988766554444 899999999999986 489999999999999999887754
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=325.17 Aligned_cols=194 Identities=20% Similarity=0.330 Sum_probs=155.7
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC------------eEEE
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------TTAY 712 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------~iay 712 (1479)
|+++|+++.|++ +++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 468999999953 47999999999999 9999999999999999999999999999999987 3799
Q ss_pred EeccCcCCC-CcHHHHHhcCCCC---ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCC
Q 000463 713 VAQTSWIQN-GTIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDC 788 (1479)
Q Consensus 713 v~Q~~~i~~-~Tv~enI~fg~~~---~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 788 (1479)
++|++.++. .|++||+.+.... +.+..++. ..+-++.+... ........+||||||||++||||++++|
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p 149 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKAR-----VDEVLELVNLG--DRAKKKIGSLSGGMRRRVGIAQALVGDP 149 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHH-----HHHHHHHCCCH--HHHhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999998775 5999999874221 11111110 11112222111 1123466789999999999999999999
Q ss_pred CEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEec
Q 000463 789 DIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSG 850 (1479)
Q Consensus 789 ~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g 850 (1479)
+++||||||++||+.+.+.+++.+.+.. +++|+|++||+++++.. +|++++|++|++++.|
T Consensus 150 ~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 150 SILIVDEPTAGLDPEERIRFRNLLSELG-EDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999986654443 46999999999999865 8999999999998754
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=331.41 Aligned_cols=210 Identities=27% Similarity=0.378 Sum_probs=166.6
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcC---ccc--CCcEEEECC---------
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGE---MHK--ISGKVKVCG--------- 708 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~---~~~--~~G~i~~~g--------- 708 (1479)
..++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+ .+| ++|+|.++|
T Consensus 2 ~~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14245 2 VKIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78 (250)
T ss_pred cEEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccccc
Confidence 36889999999952 4699999999999999999999999999999999996 454 589998876
Q ss_pred ------eEEEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCC--ccccccCCCccchHHHHHHHH
Q 000463 709 ------TTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGD--QTEIGERGINLSGGQKQRIQL 780 (1479)
Q Consensus 709 ------~iayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd--~t~ig~~g~~LSGGQkqRv~L 780 (1479)
.++|+||++.+++.|++||+.++.........+..+ ....+-++.+...+ .+..++.+.+||||||||++|
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 157 (250)
T PRK14245 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIR-QRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCI 157 (250)
T ss_pred HHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHH-HHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHH
Confidence 279999999888889999998763211000000000 00111222222211 123467788999999999999
Q ss_pred HHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 781 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
|||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++++.. ||++++|++|++++.|+++++.+
T Consensus 158 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 158 ARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999988765554 468999999999999865 89999999999999999998865
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=334.86 Aligned_cols=205 Identities=27% Similarity=0.417 Sum_probs=167.4
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-------------E
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------T 710 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------i 710 (1479)
.++++|++++|+. .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 4789999999953 236999999999999999999999999999999999999999999999872 7
Q ss_pred EEEeccC--cCCCCcHHHHHhcCCC---CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHh
Q 000463 711 AYVAQTS--WIQNGTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVY 785 (1479)
Q Consensus 711 ayv~Q~~--~i~~~Tv~enI~fg~~---~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 785 (1479)
+|++|++ .+++.|++||+.++.. .+.+..++. ..+-++.+... ......+..||||||||++||||++
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~--~~~~~~~~~LS~Gq~qrl~laraL~ 153 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHR-----VSSALHMLGLE--ELRDRVPHHLSGGEKKRVAIAGVIA 153 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHCCCh--hHhcCCcccCCHHHHHHHHHHHHHH
Confidence 9999997 3567899999987532 222211111 11112222211 1244567899999999999999999
Q ss_pred cCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHHh
Q 000463 786 QDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 786 ~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
.+|+++||||||++||+.+++.+++.+.+...+ |+|+|++||+++++. .||++++|++|++++.|+++++.+
T Consensus 154 ~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 154 MEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 999999999999999999999988766555444 899999999999986 589999999999999999998865
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=333.35 Aligned_cols=207 Identities=29% Similarity=0.414 Sum_probs=167.2
Q ss_pred CccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcc-----cCCcEEEECC--------
Q 000463 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH-----KISGKVKVCG-------- 708 (1479)
Q Consensus 642 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~i~~~g-------- 708 (1479)
+..++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|.++ |++|+|.++|
T Consensus 11 ~~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 11 NIIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 457999999999953 469999999999999999999999999999999999987 6899999876
Q ss_pred -------eEEEEeccCcCCCCcHHHHHhcCCCCCh--hhHHHHHHHhchHHHHHhccc--CCccccccCCCccchHHHHH
Q 000463 709 -------TTAYVAQTSWIQNGTIEENILFGLPMNR--AKYGEVVRVCCLEKDLEMMEY--GDQTEIGERGINLSGGQKQR 777 (1479)
Q Consensus 709 -------~iayv~Q~~~i~~~Tv~enI~fg~~~~~--~~~~~v~~~~~l~~dl~~l~~--gd~t~ig~~g~~LSGGQkqR 777 (1479)
.++|++|++.++..|++||+.++..... ...++..+ +.++.+.. +.......++.+||||||||
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVE-----RSLRKAAVWDECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHH-----HHHHHhCCcchhhhhhCCCcccCCHHHHHH
Confidence 2799999998887899999998753211 11111111 11122111 11223456778999999999
Q ss_pred HHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeC-----------CE
Q 000463 778 IQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMRE-----------GM 845 (1479)
Q Consensus 778 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~-----------G~ 845 (1479)
++||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++++.. ||++++|++ |+
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL-KKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 99999999999999999999999999999998755443 457999999999998865 899999996 67
Q ss_pred EEEecChHHHHh
Q 000463 846 IVQSGRYNALLN 857 (1479)
Q Consensus 846 i~~~g~~~~l~~ 857 (1479)
+++.|+.+++.+
T Consensus 242 ~~~~~~~~~~~~ 253 (269)
T PRK14259 242 LVEFNETKKIFN 253 (269)
T ss_pred EEEeCCHHHHHh
Confidence 899999988865
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=331.72 Aligned_cols=205 Identities=31% Similarity=0.389 Sum_probs=166.2
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCccc-----CCcEEEECC----------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK-----ISGKVKVCG---------- 708 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~i~~~g---------- 708 (1479)
.++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4889999999953 4699999999999999999999999999999999999974 799999887
Q ss_pred ---eEEEEeccCcC-CCCcHHHHHhcCCCCC-----hhhHHHHHHHhchHHHHHhcccCC--ccccccCCCccchHHHHH
Q 000463 709 ---TTAYVAQTSWI-QNGTIEENILFGLPMN-----RAKYGEVVRVCCLEKDLEMMEYGD--QTEIGERGINLSGGQKQR 777 (1479)
Q Consensus 709 ---~iayv~Q~~~i-~~~Tv~enI~fg~~~~-----~~~~~~v~~~~~l~~dl~~l~~gd--~t~ig~~g~~LSGGQkqR 777 (1479)
.++|++|++.+ ++.|++||+.++.... ...+++ .+.+.++.+...+ .......+.+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 154 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE-----RVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQR 154 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHH-----HHHHHHHHcCCCcchhhhhcCCcccCCHHHHHH
Confidence 27999999864 5689999998764321 111111 1122233322111 123456778999999999
Q ss_pred HHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHH
Q 000463 778 IQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALL 856 (1479)
Q Consensus 778 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~ 856 (1479)
|+||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++++. .||++++|++|++++.|+++++.
T Consensus 155 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL-KKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 99999999999999999999999999999998766554 45899999999999986 48999999999999999998876
Q ss_pred h
Q 000463 857 N 857 (1479)
Q Consensus 857 ~ 857 (1479)
+
T Consensus 234 ~ 234 (250)
T PRK14247 234 T 234 (250)
T ss_pred c
Confidence 4
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=333.70 Aligned_cols=210 Identities=24% Similarity=0.321 Sum_probs=168.2
Q ss_pred CccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe------------
Q 000463 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------ 709 (1479)
Q Consensus 642 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------ 709 (1479)
+..|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~~~l~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 5 VARLRGEQLTLGYG---KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred ccEEEEEEEEEEEC---CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 45799999999996 346999999999999999999999999999999999999999999999873
Q ss_pred -EEEEeccCcCC-CCcHHHHHhcCC-CCCh--hhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHH
Q 000463 710 -TAYVAQTSWIQ-NGTIEENILFGL-PMNR--AKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAV 784 (1479)
Q Consensus 710 -iayv~Q~~~i~-~~Tv~enI~fg~-~~~~--~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 784 (1479)
++|++|++.++ +.|++||+.++. +... ..+.+..+ ....+-++.+.. .......+.+||||||||++||||+
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~l--~~~~~~~~~~LS~Gq~qrv~laral 158 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDE-EAVTKAMQATGI--THLADQSVDTLSGGQRQRAWIAMVL 158 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHH-HHHHHHHHHcCC--HHHhcCCcccCChHHHHHHHHHHHH
Confidence 79999998765 579999998763 1100 00000000 001112222221 1224567789999999999999999
Q ss_pred hcCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 785 YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 785 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
+.+|+++||||||++||+.+++.+.+.+.+... +|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 159 ~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 159 AQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 999999999999999999999999876655544 38999999999998765 89999999999999999888754
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=334.60 Aligned_cols=212 Identities=24% Similarity=0.348 Sum_probs=168.3
Q ss_pred CccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcc-----cCCcEEEECC--------
Q 000463 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH-----KISGKVKVCG-------- 708 (1479)
Q Consensus 642 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~i~~~g-------- 708 (1479)
...++++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|..+ |++|+|.++|
T Consensus 22 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 22 KVVFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred ceEEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 347999999999953 469999999999999999999999999999999999987 6999999876
Q ss_pred -------eEEEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcc--cCCccccccCCCccchHHHHHHH
Q 000463 709 -------TTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMME--YGDQTEIGERGINLSGGQKQRIQ 779 (1479)
Q Consensus 709 -------~iayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~--~gd~t~ig~~g~~LSGGQkqRv~ 779 (1479)
.++|++|++.++..|++||+.++........++..+. .+.+-++.+. .+.....++++.+||||||||++
T Consensus 99 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~ 177 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDE-IVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLC 177 (271)
T ss_pred cHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHH
Confidence 2799999999888899999987532111001111110 0111111111 01112345678899999999999
Q ss_pred HHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHhc
Q 000463 780 LARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 780 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~~ 858 (1479)
||||++.+|+++||||||++||+.+.+.+.+.+.+ +.+++|+|++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 178 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 256 (271)
T PRK14238 178 IARCLAIEPDVILMDEPTSALDPISTLKVEELVQE-LKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSN 256 (271)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH-HHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 99999999999999999999999999998865544 4457999999999999865 899999999999999999887643
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=342.86 Aligned_cols=210 Identities=22% Similarity=0.338 Sum_probs=167.6
Q ss_pred cEEEEeeEEEecCCCC-cccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcc----cCCcEEEECCe---------
Q 000463 644 AVEVRDGVFSWDDENG-EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH----KISGKVKVCGT--------- 709 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~----~~~G~i~~~g~--------- 709 (1479)
.++++|++++|+.... ..+|+||||+|++||+++|+|+||||||||+++|+|+++ +++|+|.++|.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4799999999964322 469999999999999999999999999999999999997 48999999872
Q ss_pred --------EEEEeccCc---CCCCcHHHHHhcCCC----CChhhHHHHHHHhchHHHHHhcccCC-ccccccCCCccchH
Q 000463 710 --------TAYVAQTSW---IQNGTIEENILFGLP----MNRAKYGEVVRVCCLEKDLEMMEYGD-QTEIGERGINLSGG 773 (1479)
Q Consensus 710 --------iayv~Q~~~---i~~~Tv~enI~fg~~----~~~~~~~~v~~~~~l~~dl~~l~~gd-~t~ig~~g~~LSGG 773 (1479)
++|++|+|. .+..|+.+++..... .+.+..++ + ..+-++.+...+ ....+..+.+||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~--~---~~~~L~~~gL~~~~~~l~~~p~~LSgG 157 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQ--R---AIDLLNQVGIPDPASRLDVYPHQLSGG 157 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHH--H---HHHHHHHCCCCChHHHHhCCchhCCHH
Confidence 799999984 345688777654211 11111111 1 122233333322 12356788999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCcccc-cCCEEEEEeCCEEEEecC
Q 000463 774 QKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLH-NVDLILVMREGMIVQSGR 851 (1479)
Q Consensus 774 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~ 851 (1479)
|||||+||||++.+|+++|+||||++||+.++..+.+.+.+... .|.|+|+||||++.+. .||+|++|++|+|++.|+
T Consensus 158 q~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~ 237 (326)
T PRK11022 158 MSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGK 237 (326)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999877666544 4899999999999986 499999999999999999
Q ss_pred hHHHHhc
Q 000463 852 YNALLNS 858 (1479)
Q Consensus 852 ~~~l~~~ 858 (1479)
.+++.+.
T Consensus 238 ~~~~~~~ 244 (326)
T PRK11022 238 AHDIFRA 244 (326)
T ss_pred HHHHhhC
Confidence 9998764
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=331.70 Aligned_cols=209 Identities=26% Similarity=0.350 Sum_probs=165.9
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCc--cc---CCcEEEECC----------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEM--HK---ISGKVKVCG---------- 708 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~--~~---~~G~i~~~g---------- 708 (1479)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|.. +| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 5899999999952 46999999999999999999999999999999999985 36 599999876
Q ss_pred -----eEEEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccC--CccccccCCCccchHHHHHHHHH
Q 000463 709 -----TTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYG--DQTEIGERGINLSGGQKQRIQLA 781 (1479)
Q Consensus 709 -----~iayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~g--d~t~ig~~g~~LSGGQkqRv~LA 781 (1479)
.++|++|++.+++.|++||+.++........++..+ ......++.+... -.+..++.+.+|||||||||+||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLD-EAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIA 160 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHH-HHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHH
Confidence 279999999998899999998753211100011110 0111222222211 01234567889999999999999
Q ss_pred HHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 782 RAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 782 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
||++.+|+++||||||++||+.+.+.+++.+.+. .+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T PRK14239 161 RVLATSPKIILLDEPTSALDPISAGKIEETLLGL-KDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236 (252)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH-hhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999998655443 457999999999998764 89999999999999999988764
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=321.33 Aligned_cols=193 Identities=20% Similarity=0.280 Sum_probs=165.8
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 689999999964 359999999999999999999999999999999999999999999999999875 34567889999
Q ss_pred EcCccccc-cccHhhhcCCC--CCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCC
Q 000463 1348 IPQEPVLF-EGTVRSNIDPI--GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSR 1424 (1479)
Q Consensus 1348 IpQdp~LF-~gTIR~NLdp~--~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ 1424 (1479)
+||++.++ ..|+++|+... ....++++.++++..++.+.. |.++ .+||+|||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLI-------DYPC----GLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhh-------hCCh----hhcCHHHHHHHHHHHHHhcCCC
Confidence 99999886 56999999632 112345677888887775433 2222 3699999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhhcCEEEE
Q 000463 1425 LLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMDCDRVIV 1474 (1479)
Q Consensus 1425 ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~~DrIlV 1474 (1479)
+|||||||++||..+.+.+.+.|++.. +++|+|++||+.+.+.+||.-.+
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999999853 57899999999999999997554
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=329.70 Aligned_cols=203 Identities=25% Similarity=0.337 Sum_probs=165.8
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe--------------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------- 709 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------- 709 (1479)
.++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 4789999999953 46999999999999999999999999999999999999999999998762
Q ss_pred -----EEEEeccCcCCC-CcHHHHHhcCC-C---CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHH
Q 000463 710 -----TAYVAQTSWIQN-GTIEENILFGL-P---MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQ 779 (1479)
Q Consensus 710 -----iayv~Q~~~i~~-~Tv~enI~fg~-~---~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 779 (1479)
++|++|++.++. .|++|||.++. . ....... ....+.++.+ |....+.....+||||||||++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHH
Confidence 689999998765 69999997431 1 1111111 1112223333 2223456677899999999999
Q ss_pred HHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHH
Q 000463 780 LARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALL 856 (1479)
Q Consensus 780 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~ 856 (1479)
||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++++.. ||++++|++|++++.|+++++.
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 9999999999999999999999999999987555444458999999999999865 8999999999999999988764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=329.23 Aligned_cols=208 Identities=22% Similarity=0.331 Sum_probs=168.6
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe--------------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------- 709 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------- 709 (1479)
.|+++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 4789999999952 46999999999999999999999999999999999999999999999872
Q ss_pred EEEEeccCcCCC-CcHHHHHhcCCCCChhhH------HHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHH
Q 000463 710 TAYVAQTSWIQN-GTIEENILFGLPMNRAKY------GEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLAR 782 (1479)
Q Consensus 710 iayv~Q~~~i~~-~Tv~enI~fg~~~~~~~~------~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 782 (1479)
++|++|++.++. .|++||+.++...+...+ ..........+-++.+.. ......+..+|||||||||+|||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL--ADEADRLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHH
Confidence 789999998776 599999988643211000 000011112233444322 23456778899999999999999
Q ss_pred HHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 783 AVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 783 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
|++.+|+++||||||++||+.+.+.+++.+.+. .+++|+|++||++++++. ||+|++|++|++++.|+++++..
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL-AGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999999999999999998755544 447999999999999875 99999999999999999888753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=325.07 Aligned_cols=192 Identities=36% Similarity=0.538 Sum_probs=155.4
Q ss_pred EEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-------------EEE
Q 000463 646 EVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------TAY 712 (1479)
Q Consensus 646 ~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------iay 712 (1479)
+++|+++.|++. .+++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|. ++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 367899999532 246999999999999999999999999999999999999999999999872 699
Q ss_pred EeccCc--CCCCcHHHHHhcCCC---CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcC
Q 000463 713 VAQTSW--IQNGTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD 787 (1479)
Q Consensus 713 v~Q~~~--i~~~Tv~enI~fg~~---~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 787 (1479)
++|++. +++.|++||+.++.. .+....++ + ..+-++.+.. ...+.++..+|||||||||+||||++.+
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~--~---~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE--R---VEEALELVGL--EGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH--H---HHHHHHHcCc--HhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999983 577899999987532 11111111 1 1122233322 2234567789999999999999999999
Q ss_pred CCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCE
Q 000463 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGM 845 (1479)
Q Consensus 788 ~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~ 845 (1479)
|+++||||||++||+.+++.+++.+.+...+|+|+|++||+++++.. ||+|++|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999987665555568999999999999886 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=303.22 Aligned_cols=199 Identities=27% Similarity=0.472 Sum_probs=173.3
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
+++.+++.+|++ ...+++||||+++.||.+||.|+|||||||+++.|..++.|++|+|+|||+|+.+- +...|++||+
T Consensus 2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcce
Confidence 678899999987 23489999999999999999999999999999999999999999999999999764 5678999999
Q ss_pred EcCccccccc-cHhhhcCCCC---CCC----HHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHh
Q 000463 1348 IPQEPVLFEG-TVRSNIDPIG---QYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1348 IpQdp~LF~g-TIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARAL 1419 (1479)
++-+.-++.. |.||||..|+ +.+ ..++.+.-+..++.+... ..++ +||-|+|||++|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-------rRv~----~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-------RRVG----EFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-------HHHh----hhchhhHHHHHHHHHH
Confidence 9977667755 9999997654 233 345566666677776654 3343 5899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC-CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEFA-ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~-~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
.++|+|+|||||||+||.-+.+.+++.|++... +++||.-+|-++.++. ||||+++++|+
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Ge 210 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGE 210 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCc
Confidence 999999999999999999999999999998764 8999999999999995 99999999995
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=330.66 Aligned_cols=205 Identities=29% Similarity=0.388 Sum_probs=164.9
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCccc-----CCcEEEECC----------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK-----ISGKVKVCG---------- 708 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~i~~~g---------- 708 (1479)
.++++|+++.|++ +++++|+||+|++||+++|+|+||||||||+++|+|..++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 5889999999953 4699999999999999999999999999999999998763 699999876
Q ss_pred -----eEEEEeccCcCCCCcHHHHHhcCCCCC----hhhHHHHHHHhchHHHHHhccc--CCccccccCCCccchHHHHH
Q 000463 709 -----TTAYVAQTSWIQNGTIEENILFGLPMN----RAKYGEVVRVCCLEKDLEMMEY--GDQTEIGERGINLSGGQKQR 777 (1479)
Q Consensus 709 -----~iayv~Q~~~i~~~Tv~enI~fg~~~~----~~~~~~v~~~~~l~~dl~~l~~--gd~t~ig~~g~~LSGGQkqR 777 (1479)
.++|++|++.+++.|++||+.++.... .+..++. +.+.++.+.. +.....+..+.+||||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEI-----VEKSLKGAALWDEVKDRLKKSALGLSGGQQQR 154 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHH-----HHHHHHHcCCchhhHHHHhcCCCCCCHHHHHH
Confidence 279999999888899999999864211 1111111 1111222211 01123456788999999999
Q ss_pred HHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHH
Q 000463 778 IQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALL 856 (1479)
Q Consensus 778 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~ 856 (1479)
++||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++.+.. +|++++|++|++++.|+.+++.
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 155 LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL-KKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999987655443 458999999999998765 8999999999999999988875
Q ss_pred h
Q 000463 857 N 857 (1479)
Q Consensus 857 ~ 857 (1479)
.
T Consensus 234 ~ 234 (250)
T PRK14240 234 T 234 (250)
T ss_pred h
Confidence 4
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=325.87 Aligned_cols=192 Identities=23% Similarity=0.407 Sum_probs=155.9
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC----------------
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG---------------- 708 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g---------------- 708 (1479)
++++|+++.|+. ++++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999942 34799999999999999999999999999999999999999999998876
Q ss_pred eEEEEeccCcCCC-CcHHHHHhcCCC---CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHH
Q 000463 709 TTAYVAQTSWIQN-GTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAV 784 (1479)
Q Consensus 709 ~iayv~Q~~~i~~-~Tv~enI~fg~~---~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 784 (1479)
.++|++|++.++. .|++||+.++.. .+....++ ...+-++.+...+ .......+||||||||++||||+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~--~~~~~~~~LS~G~~qrl~la~al 152 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQR-----RVGAALRQVGLEH--KADAFPEQLSGGEQQRVAIARAI 152 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCChh--hhhCChhhCCHHHHHHHHHHHHH
Confidence 2789999998774 799999987532 11111110 1122233332211 23456679999999999999999
Q ss_pred hcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCE
Q 000463 785 YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGM 845 (1479)
Q Consensus 785 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~ 845 (1479)
+.+|+++||||||++||+.++..+.+.+.+...+|+|+|++||+++++.. ||++++|++|+
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999987666554568999999999999875 89999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=329.98 Aligned_cols=186 Identities=25% Similarity=0.429 Sum_probs=156.5
Q ss_pred CcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEc-Cccccc-cccH
Q 000463 1282 PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIP-QEPVLF-EGTV 1359 (1479)
Q Consensus 1282 ~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIp-Qdp~LF-~gTI 1359 (1479)
.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++++| |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987653 346788999997 667776 4699
Q ss_pred hhhcCCC---CCCCH----HHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCC
Q 000463 1360 RSNIDPI---GQYSD----EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEAT 1432 (1479)
Q Consensus 1360 R~NLdp~---~~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaT 1432 (1479)
++|+... ...+. +++.++++..++.+.. |+.+ ..||+|||||++|||||+++|+||||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELL-------DTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------cCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 9998531 12233 2345566666665433 3333 369999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1433 ASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1433 s~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
++||+++.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|+
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~ 231 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGR 231 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 99999999999999998643 6899999999999876 99999999985
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=332.04 Aligned_cols=203 Identities=27% Similarity=0.370 Sum_probs=166.8
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC----------------
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG---------------- 708 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g---------------- 708 (1479)
|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 478999999952 4799999999999999999999999999999999999999999998876
Q ss_pred ----------eEEEEeccCcCC-CCcHHHHHhcCCC----CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchH
Q 000463 709 ----------TTAYVAQTSWIQ-NGTIEENILFGLP----MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGG 773 (1479)
Q Consensus 709 ----------~iayv~Q~~~i~-~~Tv~enI~fg~~----~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 773 (1479)
.++|++|++.++ ..|++||+.++.. .+....++ ...+.++.+.. .....+.+.+||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl--~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDMVGL--ADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCC--hhHhhcChhhcCHH
Confidence 278999998776 5799999987521 11111111 11223333322 23355677899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCcccc-cCCEEEEEeCCEEEEecC
Q 000463 774 QKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLH-NVDLILVMREGMIVQSGR 851 (1479)
Q Consensus 774 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~ 851 (1479)
||||++||||++.+|+++||||||++||+.+.+.+++.+.+...+ |+|+|++||+++++. .+|++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999998766555444 899999999999986 489999999999999999
Q ss_pred hHHHHh
Q 000463 852 YNALLN 857 (1479)
Q Consensus 852 ~~~l~~ 857 (1479)
++++.+
T Consensus 231 ~~~~~~ 236 (252)
T TIGR03005 231 PDEIFR 236 (252)
T ss_pred HHHHhc
Confidence 888764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=313.60 Aligned_cols=160 Identities=36% Similarity=0.566 Sum_probs=146.4
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------eEE
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------TTA 711 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~ia 711 (1479)
++++|++++|++. .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4689999999642 34699999999999999999999999999999999999999999999987 379
Q ss_pred EEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEE
Q 000463 712 YVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIY 791 (1479)
Q Consensus 712 yv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~il 791 (1479)
|++|++++++.|++||+ ||||||||++||||++.+|+++
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999998888999998 9999999999999999999999
Q ss_pred EEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccccCCEEEEEeCCEE
Q 000463 792 LLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMI 846 (1479)
Q Consensus 792 lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~~D~i~~l~~G~i 846 (1479)
||||||++||+++++.+.+.+.+...+|+|+|++||+++++..||++++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999987665554568999999999998888999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=330.21 Aligned_cols=205 Identities=28% Similarity=0.399 Sum_probs=166.6
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccC-----CcEEEECC----------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI-----SGKVKVCG---------- 708 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~-----~G~i~~~g---------- 708 (1479)
.++++|+++.|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~~l~~~~~---~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYH---KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEEC---CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 588999999995 246999999999999999999999999999999999999987 69998765
Q ss_pred -----eEEEEeccCcCCCCcHHHHHhcCCCCC----hhhHHHHHHHhchHHHHHhccc--CCccccccCCCccchHHHHH
Q 000463 709 -----TTAYVAQTSWIQNGTIEENILFGLPMN----RAKYGEVVRVCCLEKDLEMMEY--GDQTEIGERGINLSGGQKQR 777 (1479)
Q Consensus 709 -----~iayv~Q~~~i~~~Tv~enI~fg~~~~----~~~~~~v~~~~~l~~dl~~l~~--gd~t~ig~~g~~LSGGQkqR 777 (1479)
.++|++|++.+++.|++||+.++.... ++..++.+ .+.++.+.. ......+..+.+||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVV-----EKSLRQAALWDEVKDNLHKSGLALSGGQQQR 155 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHH-----HHHHHHhCCchhhhhHhhCCcccCCHHHHHH
Confidence 389999999988889999999864321 11111111 111121111 11123467788999999999
Q ss_pred HHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHH
Q 000463 778 IQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALL 856 (1479)
Q Consensus 778 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~ 856 (1479)
|+||||++.+|+++||||||++||+.+...+.+.+.+ +.+++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQE-LKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999999999999999999999999999988765444 3468999999999999876 7999999999999999988875
Q ss_pred h
Q 000463 857 N 857 (1479)
Q Consensus 857 ~ 857 (1479)
.
T Consensus 235 ~ 235 (251)
T PRK14249 235 S 235 (251)
T ss_pred h
Confidence 4
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=322.41 Aligned_cols=197 Identities=28% Similarity=0.393 Sum_probs=155.9
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe-----------EEEE
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-----------TAYV 713 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-----------iayv 713 (1479)
|+++|++++|++ +. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 468999999952 22 3999999999999999999999999999999999999999999883 7999
Q ss_pred eccCcCCC-CcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEE
Q 000463 714 AQTSWIQN-GTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYL 792 (1479)
Q Consensus 714 ~Q~~~i~~-~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ill 792 (1479)
+|++.++. .|++||+.++........++.. ....+-++.+.. .........+||||||||++||||++.+|+++|
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~--~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~ia~al~~~p~lll 151 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDR--QAIEVALARVGL--AGLEKRLPGELSGGERQRVALARVLVRDKPVLL 151 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHH--HHHHHHHHHcCC--HHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99998875 5999999876431100000000 011122222221 122345667999999999999999999999999
Q ss_pred EeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCccccc-CCEEEEEeCCEEEEec
Q 000463 793 LDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHN-VDLILVMREGMIVQSG 850 (1479)
Q Consensus 793 LDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g 850 (1479)
|||||++||+++++.+.+.+.+... +|+|+|++||+++++.. ||++++|++|++++.|
T Consensus 152 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 152 LDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999876655444 48999999999999876 8999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=332.11 Aligned_cols=201 Identities=24% Similarity=0.264 Sum_probs=170.0
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcc--CCCCccEEEEcCEecCCCChhhhhc-
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL--VEPSGGRIIIDGIDISLLGLHDLRS- 1343 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl--~~p~~G~I~IDG~dI~~i~l~~LR~- 1343 (1479)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++...+.+..++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4899999999964 3599999999999999999999999999999999998 6899999999999999888766554
Q ss_pred ceEEEcCccccccc-cHhhhcCCC-C---------CCC----HHHHHHHHHHcCchH-HHHhCcCCccccccCCCCCCCc
Q 000463 1344 RFGIIPQEPVLFEG-TVRSNIDPI-G---------QYS----DEEIWKSLERCQLKD-VVAAKPDKLDSLVADSGDNWSV 1407 (1479)
Q Consensus 1344 ~i~iIpQdp~LF~g-TIR~NLdp~-~---------~~s----d~eI~~aL~~~~L~~-~i~~lp~gLdt~v~e~G~nLSg 1407 (1479)
.++++||+|.+|.+ |+++|+... . +.+ .+++.++++.+++.+ ... ..+. ..|||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~---~~LSg 154 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLS-------RNVN---EGFSG 154 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhc-------cccc---cCCCH
Confidence 58999999999987 889987421 1 011 234567788877752 322 2221 24999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhh--cCEEEEEeCCC
Q 000463 1408 GQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD--CDRVIVVDAGL 1479 (1479)
Q Consensus 1408 GQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~--~DrIlVL~~G~ 1479 (1479)
|||||++|||||+++|+||||||||++||.++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|+
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~ 229 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGK 229 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCE
Confidence 99999999999999999999999999999999999999999865 47999999999999876 89999999985
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=324.41 Aligned_cols=197 Identities=22% Similarity=0.363 Sum_probs=158.3
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe---------------
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT--------------- 709 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--------------- 709 (1479)
++++|+++.|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 689999999942 347999999999999999999999999999999999999999999998772
Q ss_pred -EEEEeccCcC-CCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcC
Q 000463 710 -TAYVAQTSWI-QNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD 787 (1479)
Q Consensus 710 -iayv~Q~~~i-~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 787 (1479)
++|++|++.+ ++.|++||+.++........++..+. ..+-++.+... ........+||||||||++||||++.+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~--~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~ 155 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR--VSAALDKVGLL--DKAKNFPIQLSGGEQQRVGIARAVVNK 155 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHH--HHHHHHHcCCh--hhhhCCchhCCHHHHHHHHHHHHHHcC
Confidence 6899999876 57899999988632111111111111 11223333221 123456789999999999999999999
Q ss_pred CCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEE
Q 000463 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIV 847 (1479)
Q Consensus 788 ~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~ 847 (1479)
|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++++.. ||+|++|++|+++
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 156 PAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999987655544568999999999999876 8999999999986
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=331.84 Aligned_cols=206 Identities=24% Similarity=0.357 Sum_probs=166.8
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------------eEE
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-------------TTA 711 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~ia 711 (1479)
++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++| .++
T Consensus 2 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAG---GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEEC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 67899999995 34799999999999999999999999999999999999999999999987 279
Q ss_pred EEeccCc-CCCCcHHHHHhcCCC-CChh---hHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhc
Q 000463 712 YVAQTSW-IQNGTIEENILFGLP-MNRA---KYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQ 786 (1479)
Q Consensus 712 yv~Q~~~-i~~~Tv~enI~fg~~-~~~~---~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 786 (1479)
|++|++. .+..|++||+.++.. .... ...+ ....+.+.++.++.. .....++.+||||||||++||||++.
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~~ 154 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPH--DAAVVDRALARTELS--HLADRDMSTLSGGERQRVHVARALAQ 154 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHH--HHHHHHHHHHHcCcH--hhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 9999985 456899999988632 1000 0000 011122233333222 23456778999999999999999999
Q ss_pred CCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHHh
Q 000463 787 DCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 787 ~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 155 EPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999988765554445899999999999996 599999999999999999888753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=309.64 Aligned_cols=201 Identities=27% Similarity=0.472 Sum_probs=171.6
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhh-hcce
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL-RSRF 1345 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~i 1345 (1479)
-++++|++..|.. -.+|+||||++++||.++++||||+|||||+++|+|+.+|.+|+|.++|.||+..+.|+. |..|
T Consensus 3 mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 3789999999975 459999999999999999999999999999999999999999999999999999999984 7789
Q ss_pred EEEcCccccccc-cHhhhcCCCCC------CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHH
Q 000463 1346 GIIPQEPVLFEG-TVRSNIDPIGQ------YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRV 1418 (1479)
Q Consensus 1346 ~iIpQdp~LF~g-TIR~NLdp~~~------~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARA 1418 (1479)
++|||...+|.. ||.|||..... ..+..+.++.+.. | .|.......+.+|||||+|.+++|||
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lF---------P-~Lker~~~~aG~LSGGEQQMLAiaRA 150 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELF---------P-RLKERRNQRAGTLSGGEQQMLAIARA 150 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHC---------h-hHHHHhcCcccCCChHHHHHHHHHHH
Confidence 999999999976 99999974211 1111133333332 2 23333344567899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1419 MLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1419 LLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
|..+||+|+|||||.+|-|.--+.|.++|++..+ +-||+.|-++.....+ +||.+||++|+
T Consensus 151 Lm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Gr 214 (237)
T COG0410 151 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGR 214 (237)
T ss_pred HhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCE
Confidence 9999999999999999999999999999999874 4599999999999876 99999999996
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=331.62 Aligned_cols=204 Identities=27% Similarity=0.391 Sum_probs=165.1
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcc-----cCCcEEEECC-----------
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH-----KISGKVKVCG----------- 708 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~i~~~g----------- 708 (1479)
-+++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 6 ~~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYG---SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEEC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 36889999995 3579999999999999999999999999999999999986 4799999876
Q ss_pred ----eEEEEeccCcCCCCcHHHHHhcCCCC-----ChhhHHHHHHHhchHHHHHhcccCC--ccccccCCCccchHHHHH
Q 000463 709 ----TTAYVAQTSWIQNGTIEENILFGLPM-----NRAKYGEVVRVCCLEKDLEMMEYGD--QTEIGERGINLSGGQKQR 777 (1479)
Q Consensus 709 ----~iayv~Q~~~i~~~Tv~enI~fg~~~-----~~~~~~~v~~~~~l~~dl~~l~~gd--~t~ig~~g~~LSGGQkqR 777 (1479)
.++|++|++.++..|++||+.++... +....++. ..+.++.+...+ .+.++..+.+||||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 157 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEI-----VEKSLTSVGLWEELGDRLKDSAFELSGGQQQR 157 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHH-----HHHHHHHcCCCchhhhHhhcChhhCCHHHHHH
Confidence 27899999988888999999876321 11111111 112233332211 123456788999999999
Q ss_pred HHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHH
Q 000463 778 IQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALL 856 (1479)
Q Consensus 778 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~ 856 (1479)
++||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++++.. ||++++|++|++++.|+.+++.
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL-KKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999887655444 468999999999999875 8999999999999999988876
Q ss_pred h
Q 000463 857 N 857 (1479)
Q Consensus 857 ~ 857 (1479)
+
T Consensus 237 ~ 237 (251)
T PRK14244 237 K 237 (251)
T ss_pred c
Confidence 4
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=330.47 Aligned_cols=204 Identities=25% Similarity=0.355 Sum_probs=166.9
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCccc-----CCcEEEECC---------
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK-----ISGKVKVCG--------- 708 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~i~~~g--------- 708 (1479)
..++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|..+| ++|+|.++|
T Consensus 3 ~~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 79 (251)
T PRK14270 3 IKMESKNLNLWYG---EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79 (251)
T ss_pred cEEEEEEeEEEEC---CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccccc
Confidence 3588999999995 24699999999999999999999999999999999999875 799999876
Q ss_pred ------eEEEEeccCcCCCCcHHHHHhcCCCC----Chhh----HHHHHHHhchHHHHHhcccCCccccccCCCccchHH
Q 000463 709 ------TTAYVAQTSWIQNGTIEENILFGLPM----NRAK----YGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQ 774 (1479)
Q Consensus 709 ------~iayv~Q~~~i~~~Tv~enI~fg~~~----~~~~----~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 774 (1479)
.++|++|++.++..|++||+.|+... +... ..+.++.+++..++ ....+.++.+|||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 152 (251)
T PRK14270 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEV-------KDDLKKSALKLSGGQ 152 (251)
T ss_pred HHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHH
Confidence 27999999998889999999886321 1111 11222222221111 122456788999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChH
Q 000463 775 KQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYN 853 (1479)
Q Consensus 775 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~ 853 (1479)
|||++||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++.+.. ||++++|++|++++.|+.+
T Consensus 153 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~-~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (251)
T PRK14270 153 QQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL-KKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTE 231 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHH
Confidence 99999999999999999999999999999999998655443 446999999999999875 8999999999999999998
Q ss_pred HHHh
Q 000463 854 ALLN 857 (1479)
Q Consensus 854 ~l~~ 857 (1479)
++..
T Consensus 232 ~~~~ 235 (251)
T PRK14270 232 KIFL 235 (251)
T ss_pred HHhc
Confidence 8764
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=338.10 Aligned_cols=206 Identities=25% Similarity=0.355 Sum_probs=168.5
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC------------eEE
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------TTA 711 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------~ia 711 (1479)
.++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+|++|+|.++| .+|
T Consensus 2 ~l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig 78 (301)
T TIGR03522 2 SIRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceE
Confidence 378999999995 35699999999999999999999999999999999999999999999988 379
Q ss_pred EEeccCcCCC-CcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCE
Q 000463 712 YVAQTSWIQN-GTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDI 790 (1479)
Q Consensus 712 yv~Q~~~i~~-~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 790 (1479)
|+||++.++. .|++||+.+.........++..+ ..++.++.+. .......+..+||||||||++||||++.+|++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~l~~~g--l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ--RVEEMIELVG--LRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV 154 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHCC--CchHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999998875 59999997632211000011111 1123334432 22334567889999999999999999999999
Q ss_pred EEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 791 YLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 791 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
++|||||++||+.+.+.+++.+.+ ..+++|+|++||+++++.. ||+|++|++|+++..|+.+++..
T Consensus 155 liLDEPt~gLD~~~~~~l~~~l~~-~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 155 LILDEPTTGLDPNQLVEIRNVIKN-IGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHH-hcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999876554 4458999999999999876 99999999999999999998864
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-31 Score=320.81 Aligned_cols=442 Identities=19% Similarity=0.226 Sum_probs=309.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCCH-----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000463 389 FNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGV-----GQIVNYMAVDAQQLSDMMLQLHAV-WLMPLQISVALIL 462 (1479)
Q Consensus 389 ~~~~~~~~g~riR~~L~~~Iy~K~L~ls~~~~~~~~~-----G~ivnlms~D~~ri~~~~~~~~~~-w~~plqi~lal~l 462 (1479)
..|..+++.++.|.-|+..+.+|=|.-....+-.... -..=+.++-|+..+.+....+-.- .-..++++.-..+
T Consensus 106 ~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~i 185 (604)
T COG4178 106 QTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGI 185 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556779999999999999999998877544422221 223358888888887765444332 2233344444456
Q ss_pred HHHHHHHHH---------HHHHH--HHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHhHHHHHHHhchH
Q 000463 463 LYNCLGASV---------ITTVV--GIIGVMIFVVMGTKRNN----RFQF-NVMKNRDSRMKATNEMLNYMRVIKFQAWE 526 (1479)
Q Consensus 463 L~~~lG~s~---------l~gl~--~~il~~~~~~~~~~~~~----~~q~-~~m~~~D~R~~~~sEiL~~Ik~IKl~~wE 526 (1479)
||...|.-+ +.|.. ++++.+++...++-+.+ +... +....-|-|- ....+.++...|-+|+-|
T Consensus 186 Lw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~-~Lvrv~enaE~IAly~GE 264 (604)
T COG4178 186 LWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY-SLVRVRENAEAIALYRGE 264 (604)
T ss_pred HHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH-HHHHHHhhHHHHHHhcCc
Confidence 775555221 12211 22223333333332222 2211 1122233343 344677888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHH
Q 000463 527 DHFNKRILSFRESEFGWLTKFMY----SISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNF 602 (1479)
Q Consensus 527 ~~f~~~I~~~R~~El~~l~k~~~----~~a~~~~~~~~~p~~v~~~tF~~~~l~~~~Lt~~~vFt~lalf~iL~~pl~~l 602 (1479)
+.-++++.+.=..=++..++... +..++....++++++-.++... .++.+.++.+....+-..|+.+...+..+
T Consensus 265 ~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap--~~f~g~i~~G~lmqa~~aF~~v~sslswf 342 (604)
T COG4178 265 KVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAP--RYFSGQITFGGLMQAVGAFGQVHSSLSWF 342 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccH--hhhcCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 88777765533333332222211 1112222223333211111122 23577899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc---CcccccccccC------CCCCccEEEEeeEEEecCCCCcccceeeeEEEeCC
Q 000463 603 PQSMISLSQAMISLARLDKYMLSRE---LVNESVERVEG------CDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKG 673 (1479)
Q Consensus 603 p~~i~~~~~a~vS~~RI~~fL~~~e---~~~~~~~~~~~------~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G 673 (1479)
-..+..+.+=++++.|+.+|-.+=| .++. ....+. +..+..|+++|++..-+. +.+.+++.||++++|
T Consensus 343 i~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~--~~~ll~~l~~~v~~G 419 (604)
T COG4178 343 IDNYDAIADWRATLLRLAEFRQALEAAQMDTE-KPARTGRRIDFDDNADHGITLENLSLRTPD--GQTLLSELNFEVRPG 419 (604)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhccCccc-ccCcccccccccccccceeEEeeeeEECCC--CCeeeccceeeeCCC
Confidence 9999999999999999999986422 1110 000000 111578999999998764 347899999999999
Q ss_pred cEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--eEEEEeccCcCCCCcHHHHHhcCCC---CChhhHHHHHHHhch
Q 000463 674 DLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--TTAYVAQTSWIQNGTIEENILFGLP---MNRAKYGEVVRVCCL 748 (1479)
Q Consensus 674 ~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--~iayv~Q~~~i~~~Tv~enI~fg~~---~~~~~~~~v~~~~~l 748 (1479)
|.+.|.|+||||||||+++|+|.-|--+|+|.... .+-|+||.|.++.||.||-|++... ++.+...+++..|+|
T Consensus 420 ~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL 499 (604)
T COG4178 420 ERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGL 499 (604)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCc
Confidence 99999999999999999999999999999999874 3799999999999999999999754 456778889999999
Q ss_pred HHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccC
Q 000463 749 EKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQ 828 (1479)
Q Consensus 749 ~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~ 828 (1479)
.+-.+.++.-+. -...||||||||+++||.++++|++++|||.|||||+.+...+++. ++..+.+.|+|-|.|+
T Consensus 500 ~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~-l~~~lp~~tvISV~Hr 573 (604)
T COG4178 500 GDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQL-LKEELPDATVISVGHR 573 (604)
T ss_pred HHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHH-HHhhCCCCEEEEeccc
Confidence 988887765443 3457999999999999999999999999999999999999999864 4556689999999999
Q ss_pred CcccccCCEEEEEe
Q 000463 829 VDFLHNVDLILVMR 842 (1479)
Q Consensus 829 ~~~l~~~D~i~~l~ 842 (1479)
.......++.+.+.
T Consensus 574 ~tl~~~h~~~l~l~ 587 (604)
T COG4178 574 PTLWNFHSRQLELL 587 (604)
T ss_pred hhhHHHHhhheeec
Confidence 88877666655554
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=320.51 Aligned_cols=192 Identities=23% Similarity=0.333 Sum_probs=167.3
Q ss_pred EEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEE
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. . ..|+++++
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACHY 77 (207)
T ss_pred EEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcEE
Confidence 789999999964 359999999999999999999999999999999999999999999999998753 2 27889999
Q ss_pred EcCccccc-cccHhhhcCCC---CCCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCC
Q 000463 1348 IPQEPVLF-EGTVRSNIDPI---GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHS 1423 (1479)
Q Consensus 1348 IpQdp~LF-~gTIR~NLdp~---~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~ 1423 (1479)
++|++.++ ..|+++|+... ....++++.++++..++.+.....+ .+||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPF-----------GYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCCh-----------hhcCHHHHHHHHHHHHHhcCC
Confidence 99988765 67999998532 2234667899999999976433222 369999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCcEEEEEccChhhhhhcCEEEEEe
Q 000463 1424 RLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMDCDRVIVVD 1476 (1479)
Q Consensus 1424 ~ILiLDEaTs~lD~~Te~~Iq~~I~~~f-~~~TvI~IAHRl~ti~~~DrIlVL~ 1476 (1479)
++|+|||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. |+++.++
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~ 199 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLG 199 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeec
Confidence 9999999999999999999999998753 57899999999999988 9998875
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=340.36 Aligned_cols=210 Identities=20% Similarity=0.290 Sum_probs=168.9
Q ss_pred ccEEEEeeEEEecCCC-------CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC-------
Q 000463 643 IAVEVRDGVFSWDDEN-------GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------- 708 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~-------~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------- 708 (1479)
..++++|++++|+... ..++|+||||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 4689999999996321 24689999999999999999999999999999999999999999999887
Q ss_pred ---------eEEEEeccCc--C-CCCcHHHHHhcCCC----CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccch
Q 000463 709 ---------TTAYVAQTSW--I-QNGTIEENILFGLP----MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSG 772 (1479)
Q Consensus 709 ---------~iayv~Q~~~--i-~~~Tv~enI~fg~~----~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 772 (1479)
.++|++|+|. + +..|+.+|+..+.. .+.....+ + ..+-++.+...+ ......+.+|||
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~--~---~~~~l~~~gL~~-~~~~~~p~~LSg 157 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERRE--K---ALAMMAKVGLRP-EHYDRYPHMFSG 157 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHH--H---HHHHHHHCCCCh-HHhcCCCccCCH
Confidence 3799999983 3 45699999864321 12111111 1 112233332211 123567889999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCccccc-CCEEEEEeCCEEEEec
Q 000463 773 GQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHN-VDLILVMREGMIVQSG 850 (1479)
Q Consensus 773 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g 850 (1479)
||||||+|||||+.+|+++|+||||++||+.+++++++.+.+... .|.|+|+||||++.+.. ||+|++|++|+|++.|
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999986665544 48999999999999975 9999999999999999
Q ss_pred ChHHHHhc
Q 000463 851 RYNALLNS 858 (1479)
Q Consensus 851 ~~~~l~~~ 858 (1479)
+.+++.+.
T Consensus 238 ~~~~~~~~ 245 (327)
T PRK11308 238 TKEQIFNN 245 (327)
T ss_pred CHHHHhcC
Confidence 99998864
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=320.74 Aligned_cols=198 Identities=28% Similarity=0.441 Sum_probs=173.8
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCE---ecCCCChhhhhc
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI---DISLLGLHDLRS 1343 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~---dI~~i~l~~LR~ 1343 (1479)
.|+++|++..|+. ..+++|||++|+.||.+|+.||||||||||+++|.|+..|++|+|.+||. |.+++ +.-.+
T Consensus 2 ~i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~R 77 (345)
T COG1118 2 SIRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRDR 77 (345)
T ss_pred ceeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhhc
Confidence 3778888888864 35899999999999999999999999999999999999999999999999 87773 33346
Q ss_pred ceEEEcCcccccc-ccHhhhcCCCC---------CCCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHH
Q 000463 1344 RFGIIPQEPVLFE-GTVRSNIDPIG---------QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLL 1413 (1479)
Q Consensus 1344 ~i~iIpQdp~LF~-gTIR~NLdp~~---------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl 1413 (1479)
+||+|.||.-||. -||++||...- ...+.++.+.|+.++|...-...|. .||||||||+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~-----------QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPA-----------QLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCch-----------hcChHHHHHH
Confidence 7999999999885 49999997432 1235667888999999888877775 4699999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1414 CLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1414 ~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
+|||||.-.|++|+||||.++||..-.+.+++-|++.. -++|++.|||+.+.+.. ||||+||++|+
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~ 215 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGR 215 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCe
Confidence 99999999999999999999999999999999998865 37999999999999877 99999999995
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=341.02 Aligned_cols=194 Identities=23% Similarity=0.343 Sum_probs=157.8
Q ss_pred cccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC------------eEEEEeccCcCCC-CcHHH
Q 000463 660 EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------TTAYVAQTSWIQN-GTIEE 726 (1479)
Q Consensus 660 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------~iayv~Q~~~i~~-~Tv~e 726 (1479)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+||++.++. .|++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 4799999999999999999999999999999999999999999999988 2799999987764 59999
Q ss_pred HHhcCCCCChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHH
Q 000463 727 NILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS 806 (1479)
Q Consensus 727 nI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~ 806 (1479)
|+.+..........+..+ ...+-++.+... .....+..+||||||||++||||++++|+++||||||++||+.+++
T Consensus 86 ~l~~~~~~~~~~~~~~~~--~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 161 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEE--RAEELLELFELG--EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRR 161 (302)
T ss_pred HHHHHHHHcCCCHHHHHH--HHHHHHHHcCCh--hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHH
Confidence 998742211000011000 112223333222 1234567899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 807 DIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 807 ~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
.+++.+.+...+|+|+|++||+++++.. ||+|++|++|+++..|+++++.+
T Consensus 162 ~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 162 AIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9987665555568999999999999875 99999999999999999988764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=334.39 Aligned_cols=204 Identities=31% Similarity=0.485 Sum_probs=166.6
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECCe---------------
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT--------------- 709 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--------------- 709 (1479)
++++|++++|+. ..++++|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999952 246999999999999999999999999999999999999999999998872
Q ss_pred EEEEeccC--cCCCCcHHHHHhcCCC---CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHH
Q 000463 710 TAYVAQTS--WIQNGTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAV 784 (1479)
Q Consensus 710 iayv~Q~~--~i~~~Tv~enI~fg~~---~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 784 (1479)
++|++|++ .+++.|++|||.++.. .......+ + ..+-++.+... ......+.+||||||||++||||+
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~--~---~~~~l~~~~L~--~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK--R---VKEALKAVGME--GFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH--H---HHHHHHHCCCc--hhhcCChhhCCHHHHHHHHHHHHH
Confidence 68999997 5677899999987632 11111111 1 11222222221 123456789999999999999999
Q ss_pred hcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCcccc-cCCEEEEEeCCEEEEecChHHHHh
Q 000463 785 YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 785 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
+.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++++. .||++++|++|++++.|+++++..
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999998766555446899999999999987 499999999999999999988764
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=329.40 Aligned_cols=205 Identities=26% Similarity=0.381 Sum_probs=165.8
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcc-----cCCcEEEECCe---------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH-----KISGKVKVCGT--------- 709 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~i~~~g~--------- 709 (1479)
.++++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEEC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 589999999995 2479999999999999999999999999999999999987 47999988762
Q ss_pred ------EEEEeccCcCCCCcHHHHHhcCCCCC----hhhHHHHHHHhchHHHHHhcccC--CccccccCCCccchHHHHH
Q 000463 710 ------TAYVAQTSWIQNGTIEENILFGLPMN----RAKYGEVVRVCCLEKDLEMMEYG--DQTEIGERGINLSGGQKQR 777 (1479)
Q Consensus 710 ------iayv~Q~~~i~~~Tv~enI~fg~~~~----~~~~~~v~~~~~l~~dl~~l~~g--d~t~ig~~g~~LSGGQkqR 777 (1479)
++|++|++.+++.|++||+.++.... ++..++. ..+-++.+... .....+.++.+||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQR-----VEESLKQAAIWKETKDNLDRNAQAFSGGQQQR 155 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHH-----HHHHHHHcCCCcchHHHhccChhhCCHHHHHH
Confidence 78999999988899999998764211 1111111 11112221110 0122356778999999999
Q ss_pred HHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHH
Q 000463 778 IQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALL 856 (1479)
Q Consensus 778 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~ 856 (1479)
++||||++++|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++++.. ||+|++|++|++++.|+.+++.
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL-KHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHH-HcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999888655544 457999999999999765 8999999999999999988875
Q ss_pred h
Q 000463 857 N 857 (1479)
Q Consensus 857 ~ 857 (1479)
.
T Consensus 235 ~ 235 (251)
T PRK14251 235 I 235 (251)
T ss_pred h
Confidence 4
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=326.86 Aligned_cols=179 Identities=26% Similarity=0.442 Sum_probs=154.8
Q ss_pred eeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEecCCCChhhhhcceEEEcCcccccc-ccHhhhc
Q 000463 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFE-GTVRSNI 1363 (1479)
Q Consensus 1285 L~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~-gTIR~NL 1363 (1479)
|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+++||+|.+|. .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 589999999999999999999999999999999999999999999999876543 2489999999987 5999998
Q ss_pred CCC-----CCCCH----HHHHHHHHHcCchHHHHhCcCCccccccCCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCC
Q 000463 1364 DPI-----GQYSD----EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATAS 1434 (1479)
Q Consensus 1364 dp~-----~~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQrl~LARALLr~~~ILiLDEaTs~ 1434 (1479)
... ...++ +++.+++++.++.+..... ...||||||||++|||||+++|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKR-----------PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCC-----------hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 531 22332 3467778888886654333 246899999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1435 VDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1435 lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|+
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~ 192 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGP 192 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCc
Confidence 999999999999988643 7899999999999876 99999999985
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=330.73 Aligned_cols=201 Identities=24% Similarity=0.400 Sum_probs=166.8
Q ss_pred cEEEEeeeeeecCCCCcceeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhccCCCCccEEEEcCEe-----cCCCChhh-
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGID-----ISLLGLHD- 1340 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~GekvgIVGrTGSGKSTLl~~L~rl~~p~~G~I~IDG~d-----I~~i~l~~- 1340 (1479)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +...+..+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4899999999964 348999999999999999999999999999999999999999999999988 77666543
Q ss_pred ---hhcceEEEcCccc--c-ccccHhhhcC----CCCC----CCHHHHHHHHHHcCchHHHHhCcCCccccccCCCCCCC
Q 000463 1341 ---LRSRFGIIPQEPV--L-FEGTVRSNID----PIGQ----YSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWS 1406 (1479)
Q Consensus 1341 ---LR~~i~iIpQdp~--L-F~gTIR~NLd----p~~~----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1406 (1479)
++++++++||+|. + +..|+.+|+. .+.. ..++++.+.++..++.+ +.......+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~LS 150 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAFS 150 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhcC
Confidence 3467999999985 2 3458888873 1111 12345666666666642 12233455799
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CcEEEEEccChhhhhh-cCEEEEEeCCC
Q 000463 1407 VGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1407 gGQrQrl~LARALLr~~~ILiLDEaTs~lD~~Te~~Iq~~I~~~f~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1479 (1479)
||||||++|||||+++|++|+|||||++||+.+.+.+.+.|++..+ +.|+|+|+|+++.+.. ||++++|++|+
T Consensus 151 gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~ 226 (253)
T TIGR02323 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGR 226 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 9999999999999999999999999999999999999999988643 7899999999999986 99999999985
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=324.10 Aligned_cols=196 Identities=22% Similarity=0.323 Sum_probs=161.9
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC---------eEEEEec
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG---------TTAYVAQ 715 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g---------~iayv~Q 715 (1479)
++++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~l~~v~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q 77 (223)
T TIGR03740 1 LETKNLSKRFG---KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIE 77 (223)
T ss_pred CEEEeEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcC
Confidence 46899999995 35799999999999999999999999999999999999999999999987 3789999
Q ss_pred cCcCCC-CcHHHHHhcCCC---CChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEE
Q 000463 716 TSWIQN-GTIEENILFGLP---MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIY 791 (1479)
Q Consensus 716 ~~~i~~-~Tv~enI~fg~~---~~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~il 791 (1479)
++.++. .|++||+.++.. .++.+..+.++..++. .....+..+||||||||++||||++.+|+++
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLT-----------NTGKKKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCc-----------HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 987664 799999986432 1222222222222222 1234566789999999999999999999999
Q ss_pred EEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHH
Q 000463 792 LLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNA 854 (1479)
Q Consensus 792 lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~ 854 (1479)
||||||++||+.+.+.+.+.+.+...+|+|+|++||+++++.. ||++++|++|++++.|+.++
T Consensus 147 llDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999987665554568999999999999865 99999999999999888653
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=332.31 Aligned_cols=211 Identities=29% Similarity=0.405 Sum_probs=167.6
Q ss_pred CccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcc-----cCCcEEEECC--------
Q 000463 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH-----KISGKVKVCG-------- 708 (1479)
Q Consensus 642 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~i~~~g-------- 708 (1479)
...++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|..+ |++|+|.++|
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 457999999999952 469999999999999999999999999999999999987 4899998876
Q ss_pred -------eEEEEeccCcCCCCcHHHHHhcCCCCChhhHHHHHHHhchHHHHHhcccCC--ccccccCCCccchHHHHHHH
Q 000463 709 -------TTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGD--QTEIGERGINLSGGQKQRIQ 779 (1479)
Q Consensus 709 -------~iayv~Q~~~i~~~Tv~enI~fg~~~~~~~~~~v~~~~~l~~dl~~l~~gd--~t~ig~~g~~LSGGQkqRv~ 779 (1479)
.++|++|++.+++.|++||+.++........++..+ ....+-++.+...+ .+..++++.+|||||||||+
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 178 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLD-EAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV 178 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHH-HHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence 378999999988889999998763211100111000 00111122221111 12456778899999999999
Q ss_pred HHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 780 LARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 780 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 179 laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~-~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 256 (272)
T PRK14236 179 IARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL-KSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFT 256 (272)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhc
Confidence 999999999999999999999999999887655544 357899999999999764 89999999999999999888754
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=330.75 Aligned_cols=206 Identities=24% Similarity=0.383 Sum_probs=165.1
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccC---CcEEEECC------------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI---SGKVKVCG------------ 708 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~---~G~i~~~g------------ 708 (1479)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~nl~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFN---QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeC---CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 589999999995 357999999999999999999999999999999999999886 49998887
Q ss_pred ------eEEEEeccCcCCC-CcHHHHHhcCCCCCh-------hhHHHHHHHhchHHHHHhcccCCccccccCCCccchHH
Q 000463 709 ------TTAYVAQTSWIQN-GTIEENILFGLPMNR-------AKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQ 774 (1479)
Q Consensus 709 ------~iayv~Q~~~i~~-~Tv~enI~fg~~~~~-------~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 774 (1479)
.++|++|++.++. .|++||+.++..... ....+.. .....+-++.+... ......+.+|||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~--~~~~~~~~~LS~G~ 157 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQ-KQRALQALTRVGMV--HFAHQRVSTLSGGQ 157 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHH-HHHHHHHHHHcCCH--HHHhCCccccCHHH
Confidence 2699999987765 699999988642100 0000000 01112223333221 23456778999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCcccc-cCCEEEEEeCCEEEEecCh
Q 000463 775 KQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRY 852 (1479)
Q Consensus 775 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~-~~D~i~~l~~G~i~~~g~~ 852 (1479)
||||+||||++.+|+++||||||++||+++.+.+.+.+.+... +|+|+|++||+++.+. .||+|++|++|++.+.|++
T Consensus 158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~ 237 (262)
T PRK09984 158 QQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSS 237 (262)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999876655544 4899999999999875 4899999999999999999
Q ss_pred HHH
Q 000463 853 NAL 855 (1479)
Q Consensus 853 ~~l 855 (1479)
+++
T Consensus 238 ~~~ 240 (262)
T PRK09984 238 QQF 240 (262)
T ss_pred HHh
Confidence 886
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=329.48 Aligned_cols=198 Identities=25% Similarity=0.395 Sum_probs=161.2
Q ss_pred EEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccCCcEEEECC--------eEEEEecc
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------TTAYVAQT 716 (1479)
Q Consensus 645 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------~iayv~Q~ 716 (1479)
++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|+
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 689999999953 4799999999999999999999999999999999999999999999987 37999999
Q ss_pred CcCCC-CcHHHHHhcCCCC---ChhhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHHHHHHHHHHhcCCCEEE
Q 000463 717 SWIQN-GTIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYL 792 (1479)
Q Consensus 717 ~~i~~-~Tv~enI~fg~~~---~~~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ill 792 (1479)
+.++. .|++||+.++... ......+ ...+-++.+.. ......++.+||||||||++||||++.+|+++|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~gl--~~~~~~~~~~LSgGq~qrl~laral~~~p~lll 151 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLE-----IAHQMLKKVGL--EGAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHcCC--hhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 87765 6999999875321 1111111 11222333322 122345778999999999999999999999999
Q ss_pred EeCccCCCChhhHHHHHHHHHhhhc-CCcEEEEEccCCccccc-CCEEEEEe--CCEEEEecCh
Q 000463 793 LDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHN-VDLILVMR--EGMIVQSGRY 852 (1479)
Q Consensus 793 LDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvTH~~~~l~~-~D~i~~l~--~G~i~~~g~~ 852 (1479)
|||||++||+.+.+.+.+.+.+... +|+|+|++||+++++.. ||++++|+ +|++++.++.
T Consensus 152 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 152 LDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999876655433 48999999999999865 89999998 5999987654
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=330.41 Aligned_cols=208 Identities=25% Similarity=0.328 Sum_probs=165.6
Q ss_pred cEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCccc-----CCcEEEECC----------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK-----ISGKVKVCG---------- 708 (1479)
Q Consensus 644 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~i~~~g---------- 708 (1479)
.++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 5899999999953 4699999999999999999999999999999999999987 499998876
Q ss_pred -----eEEEEeccCcCCC-CcHHHHHhcCCCCChh--hHHHHHHHhchHHHHHhcccC--CccccccCCCccchHHHHHH
Q 000463 709 -----TTAYVAQTSWIQN-GTIEENILFGLPMNRA--KYGEVVRVCCLEKDLEMMEYG--DQTEIGERGINLSGGQKQRI 778 (1479)
Q Consensus 709 -----~iayv~Q~~~i~~-~Tv~enI~fg~~~~~~--~~~~v~~~~~l~~dl~~l~~g--d~t~ig~~g~~LSGGQkqRv 778 (1479)
.++|++|++.++. .|++||+.++...... ..++..+ ...+.++.+... ........+.+||||||||+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDE--RVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRL 158 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHH--HHHHHHHHcCCccchhhhhccChhhCCHHHHHHH
Confidence 2699999998775 5999999875321100 0111000 011222222110 01234567889999999999
Q ss_pred HHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEeCCEEEEecChHHHHh
Q 000463 779 QLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLN 857 (1479)
Q Consensus 779 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g~~~~l~~ 857 (1479)
+||||++++|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++++.. ||+|++|++|++++.|+++++.+
T Consensus 159 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (253)
T PRK14267 159 VIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL-KKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFE 237 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999998765554 457999999999999765 99999999999999999988764
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=329.94 Aligned_cols=205 Identities=27% Similarity=0.370 Sum_probs=167.2
Q ss_pred ccEEEEeeEEEecCCCCcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcc-----cCCcEEEECC---------
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMH-----KISGKVKVCG--------- 708 (1479)
Q Consensus 643 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~i~~~g--------- 708 (1479)
..++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 9 ~~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 85 (264)
T PRK14243 9 TVLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85 (264)
T ss_pred eEEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccC
Confidence 46999999999952 479999999999999999999999999999999999876 4799999876
Q ss_pred ------eEEEEeccCcCCCCcHHHHHhcCCCCC---h---hhHHHHHHHhchHHHHHhcccCCccccccCCCccchHHHH
Q 000463 709 ------TTAYVAQTSWIQNGTIEENILFGLPMN---R---AKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQ 776 (1479)
Q Consensus 709 ------~iayv~Q~~~i~~~Tv~enI~fg~~~~---~---~~~~~v~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 776 (1479)
.++|++|++.+++.|++||+.++.... . ++..+.++.+++..++. ...+.++.+|||||||
T Consensus 86 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~q 158 (264)
T PRK14243 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQ 158 (264)
T ss_pred hHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHH
Confidence 279999999888789999999864321 1 11111222222222221 1245678899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcCCcEEEEEccCCccccc-CCEEEEEe---------CCEE
Q 000463 777 RIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMR---------EGMI 846 (1479)
Q Consensus 777 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvTH~~~~l~~-~D~i~~l~---------~G~i 846 (1479)
|++||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++++.. ||++++|+ +|++
T Consensus 159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i 237 (264)
T PRK14243 159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL-KEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYL 237 (264)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceE
Confidence 999999999999999999999999999999987655443 456899999999999875 89999998 8999
Q ss_pred EEecChHHHHhc
Q 000463 847 VQSGRYNALLNS 858 (1479)
Q Consensus 847 ~~~g~~~~l~~~ 858 (1479)
++.|+.+++.+.
T Consensus 238 ~~~~~~~~~~~~ 249 (264)
T PRK14243 238 VEFDRTEKIFNS 249 (264)
T ss_pred EEeCCHHHHHhC
Confidence 999999988653
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=340.29 Aligned_cols=212 Identities=20% Similarity=0.318 Sum_probs=169.4
Q ss_pred CccEEEEeeEEEecCCC-CcccceeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcCcccC---CcEEEECC---------
Q 000463 642 NIAVEVRDGVFSWDDEN-GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI---SGKVKVCG--------- 708 (1479)
Q Consensus 642 ~~~i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~---~G~i~~~g--------- 708 (1479)
+..++++|++++|.... ..++++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 34789999999996432 346999999999999999999999999999999999999985 99999887
Q ss_pred --------eEEEEeccCc---CCCCcHHHHHhcCCC----CChhhHHHHHHHhchHHHHHhcccCC-ccccccCCCccch
Q 000463 709 --------TTAYVAQTSW---IQNGTIEENILFGLP----MNRAKYGEVVRVCCLEKDLEMMEYGD-QTEIGERGINLSG 772 (1479)
Q Consensus 709 --------~iayv~Q~~~---i~~~Tv~enI~fg~~----~~~~~~~~v~~~~~l~~dl~~l~~gd-~t~ig~~g~~LSG 772 (1479)
.++|++|+|. .+..|+.+|+..... .+..... .++. +-++.+...+ ...++..+.+|||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~--~~~~---~~L~~vgL~~~~~~~~~~p~~LSg 164 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAF--EESV---RMLDAVKMPEARKRMKMYPHEFSG 164 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH--HHHH---HHHHHcCCCChHHHhcCCcccCCH
Confidence 3899999983 345789888864321 1111111 1111 1222222221 1235678899999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCccCCCChhhHHHHHHHHHhhhcC-CcEEEEEccCCccccc-CCEEEEEeCCEEEEec
Q 000463 773 GQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHN-VDLILVMREGMIVQSG 850 (1479)
Q Consensus 773 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvTH~~~~l~~-~D~i~~l~~G~i~~~g 850 (1479)
||||||+||||++.+|+++|+||||++||+.++..+.+.+.+...+ |.|+|+||||++.+.. ||+|++|++|+|++.|
T Consensus 165 G~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g 244 (330)
T PRK09473 165 GMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYG 244 (330)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999998766555443 8999999999999875 8999999999999999
Q ss_pred ChHHHHhc
Q 000463 851 RYNALLNS 858 (1479)
Q Consensus 851 ~~~~l~~~ 858 (1479)
+.+++.+.
T Consensus 245 ~~~~i~~~ 252 (330)
T PRK09473 245 NARDVFYQ 252 (330)
T ss_pred CHHHHHhC
Confidence 99998764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1479 | ||||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 4e-56 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-21 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 6e-56 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 7e-07 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-44 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-09 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-44 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-09 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 7e-44 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 7e-09 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 8e-44 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 7e-09 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 6e-43 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 9e-09 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 8e-43 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-08 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 4e-42 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 2e-09 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 7e-42 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-10 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 1e-41 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-09 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-41 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 9e-09 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 3e-41 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-10 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 4e-41 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-10 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 3e-39 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 2e-09 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-37 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 6e-32 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-31 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-26 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-31 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-26 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-30 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 5e-27 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-26 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-24 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-25 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 8e-25 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-24 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-24 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 7e-24 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 7e-24 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-23 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 5e-22 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-23 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-22 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-22 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-22 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-21 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 6e-22 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-21 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 5e-21 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 3e-20 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-20 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-17 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-17 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-17 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-06 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-17 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 7e-16 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-04 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-14 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-14 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 7e-13 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-12 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 9e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 1e-12 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 2e-12 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 3e-12 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 5e-12 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 6e-12 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 1e-11 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-11 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-11 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 6e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-11 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 7e-07 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 7e-11 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 5e-06 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-05 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-10 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-05 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 4e-10 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 5e-07 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 5e-10 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 9e-10 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 9e-05 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-09 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-06 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-09 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-07 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-09 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 7e-06 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-09 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-08 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 3e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-09 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-09 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 3e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 7e-09 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 9e-09 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 1e-08 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 2e-08 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-08 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-08 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-08 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 7e-08 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 4e-07 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 2e-06 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 5e-06 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 5e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 8e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 3e-05 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 5e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 5e-04 |
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 413 bits (1064), Expect = e-134
Identities = 91/272 (33%), Positives = 142/272 (52%), Gaps = 1/272 (0%)
Query: 610 SQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLE 669
S + + + + + + + FS G LK+IN +
Sbjct: 1 STTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFK 60
Query: 670 IKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENIL 729
I++G L A+ G+ G+GK+SLL I+GE+ GK+K G ++ +Q SWI GTI+ENI+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII 120
Query: 730 FGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCD 789
G+ + +Y V++ C LE+D+ D +GE GI LSGGQ+ RI LARAVY+D D
Sbjct: 121 -GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179
Query: 790 IYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQS 849
+YLLD F +D T +IF+ CV + KT ILVT +++ L D IL++ EG
Sbjct: 180 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFY 239
Query: 850 GRYNALLNSGMDFGALVAAHETSMELVEVGKT 881
G ++ L N DF + + ++ + +
Sbjct: 240 GTFSELQNLRPDFSSKLMGCDSFDQFSAERRN 271
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 5e-27
Identities = 55/250 (22%), Positives = 104/250 (41%), Gaps = 23/250 (9%)
Query: 1233 MVSVERIKQF--TEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITL 1290
V +E + F ++ ++ + + VLK I
Sbjct: 4 EVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLG----TPVLKDINF 59
Query: 1291 SIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQ 1350
I G+ + V G TG+GK++L+ + +EPS G+I G R Q
Sbjct: 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQ 106
Query: 1351 EPVLFEGTVRSNIDPIGQYSDEEI-WKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQ 1409
+ GT++ NI IG DE ++ CQL++ ++ +K + ++ + G S GQ
Sbjct: 107 NSWIMPGTIKENI--IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQ 164
Query: 1410 RQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIREEFAACTIISIAHRIPTVMD 1468
R + L R + K + L +D +D T+ EI + + + A T I + ++ +
Sbjct: 165 RARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 224
Query: 1469 CDRVIVVDAG 1478
D+++++ G
Sbjct: 225 ADKILILHEG 234
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 417 bits (1074), Expect = e-134
Identities = 84/221 (38%), Positives = 132/221 (59%), Gaps = 1/221 (0%)
Query: 1258 PPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFR 1317
WP+ G + + DL +Y +L+ I+ SI G+++G++GRTGSGKSTL+ F R
Sbjct: 10 KDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69
Query: 1318 LVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKS 1377
L+ G I IDG+ + L R FG+IPQ+ +F GT R N+DP +SD+EIWK
Sbjct: 70 LLNTEG-EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKV 128
Query: 1378 LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS 1437
+ L+ V+ P KLD ++ D G S G +QL+CL R +L +++L +DE +A +D
Sbjct: 129 ADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP 188
Query: 1438 QTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
T I+R +++ FA CT+I RI +++CD+ +V++
Sbjct: 189 VTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEEN 229
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 1e-26
Identities = 62/291 (21%), Positives = 104/291 (35%), Gaps = 27/291 (9%)
Query: 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGK 703
+ V+D + E G L+NI+ I G ++G GSGKS+LL++ L + G+
Sbjct: 19 QMTVKDLTAKYT-EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR-LLNTEGE 76
Query: 704 VKVCGT-TAYVA------------QTSWIQNGTIEENILFGLPMNRAKYG-----EVVRV 745
+++ G + Q +I +GT +N+ P + +V
Sbjct: 77 IQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD---PNA--AHSDQEIWKVADE 131
Query: 746 CCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTG 805
L +E + + G LS G KQ + LAR+V I LLD+ + +D T
Sbjct: 132 VGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY 191
Query: 806 SDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALL-NSGMDFGA 864
I + ++ A T+IL +++ + D LV+ E + Q L F A
Sbjct: 192 QII-RRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVA 250
Query: 865 LVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNS 915
L P + V + S
Sbjct: 251 GFIGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMS 301
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 409 bits (1054), Expect = e-133
Identities = 109/233 (46%), Positives = 146/233 (62%), Gaps = 3/233 (1%)
Query: 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGK 703
++ VR+ F+W + L I I +G L A+VG VG GKSSLL+++L EM K+ G
Sbjct: 3 SITVRNATFTWARSD-PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 704 VKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEI 763
V + G+ AYV Q +WIQN ++ ENILFG + Y V++ C L DLE++ GD+TEI
Sbjct: 62 VAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEI 121
Query: 764 GERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECV--RGALKGKT 821
GE+G+NLSGGQKQR+ LARAVY + DIYL DD SAVDAH G IF+ + +G LK KT
Sbjct: 122 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKT 181
Query: 822 IILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSME 874
ILVTH + +L VD+I+VM G I + G Y LL F + + +
Sbjct: 182 RILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYASHHH 234
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 5e-21
Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 32/224 (14%)
Query: 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGR 1325
++ + + + + P L GIT SI G + VVG+ G GKS+L+ ++ G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1326 IIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEI-WKSLERCQLK 1384
+ I G +PQ+ + ++R NI G +E ++ C L
Sbjct: 62 VAIKG-------------SVAYVPQQAWIQNDSLRENI-LFGCQLEEPYYRSVIQACALL 107
Query: 1385 DVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 1444
+ P + + + G N S GQ+Q + L R + ++ + D+ ++VD+ I
Sbjct: 108 PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI- 166
Query: 1445 RIIREEFAAC----------TIISIAHRIPTVMDCDRVIVVDAG 1478
F T I + H + + D +IV+ G
Sbjct: 167 ------FENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGG 204
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 406 bits (1046), Expect = e-132
Identities = 92/225 (40%), Positives = 135/225 (60%), Gaps = 1/225 (0%)
Query: 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGK 703
V + + W+ E G LK+IN +I++G L A+ G+ G+GK+SLL I+GE+ GK
Sbjct: 6 EVVMENVTAFWE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 64
Query: 704 VKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEI 763
+K G ++ +Q SWI GTI+ENI+FG+ + +Y V++ C LE+D+ D +
Sbjct: 65 IKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVL 124
Query: 764 GERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTII 823
GE GI LSGGQ+ RI LARAVY+D D+YLLD F +D T +IF+ CV + KT I
Sbjct: 125 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 184
Query: 824 LVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAA 868
LVT +++ L D IL++ EG G ++ L N DF + +
Sbjct: 185 LVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMG 229
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 1e-24
Identities = 50/215 (23%), Positives = 96/215 (44%), Gaps = 14/215 (6%)
Query: 1265 HGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGG 1324
V + ++ + VLK I I G+ + V G TG+GK++L+ + +EPS G
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 1325 RIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLK 1384
+I G R Q + GT++ NI Y + ++ CQL+
Sbjct: 64 KIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLE 110
Query: 1385 DVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEI- 1443
+ ++ +K + ++ + G S GQR + L R + K + L +D +D T+ EI
Sbjct: 111 EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIF 170
Query: 1444 QRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
+ + + A T I + ++ + D+++++ G
Sbjct: 171 ESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 205
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 399 bits (1027), Expect = e-117
Identities = 222/1182 (18%), Positives = 446/1182 (37%), Gaps = 125/1182 (10%)
Query: 370 YLVLILLVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIV 429
+ +L+ +++V + + + IR ++ + H VG++
Sbjct: 116 GIGAGVLIVAYIQVSF---WCLAAGRQIHKIRQKFFHAI----MNQEIGWFDVHDVGELN 168
Query: 430 NYMAVDAQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVIT-------TVVGIIGVM 482
+ D ++++ + +I + + G +I T+V +
Sbjct: 169 TRLTDDVSKINEGIGD---------KIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISP 219
Query: 483 IFVVMGTKRNNRFQFNVMKNRDSRMKATN---EMLNYMRVIKFQAWEDHFNKRILSFRES 539
+ + K + KA E+L +R + + +R + E
Sbjct: 220 VLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEE 279
Query: 540 EFGWLTKFMYSISGNIIVMWSTPVLISTLTFATALLFGVPL------DAGSVFTTTTIFK 593
K + + ++ + L+ ++A A +G L G V T
Sbjct: 280 AKRLGIKKAITANISMGAAF----LLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVL 335
Query: 594 ILQEPIRNFPQSMISLSQAMISLARLDKYMLSRE----LVNESVERVEGCDDNIAVEVRD 649
I + ++ + + A + + K ++ + ++S + + N+ E ++
Sbjct: 336 IGAFSVGQASPNIEAFANARGAAYEVFK-IIDNKPSIDSFSKSGHKPDNIQGNL--EFKN 392
Query: 650 GVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT 709
FS+ + LK +NL++K G A+VG G GKS+ + + + G V + G
Sbjct: 393 IHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQ 452
Query: 710 -------------TAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVC---CLEKDLE 753
V+Q + TI ENI +G E+ + +
Sbjct: 453 DIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE--DVTMDEIEKAVKEANAYDFIM 510
Query: 754 MMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECV 813
+ + T +GERG LSGGQKQRI +ARA+ ++ I LLD+ SA+D + + + +
Sbjct: 511 KLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQ-AAL 569
Query: 814 RGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSM 873
A +G+T I++ H++ + N D+I G+IV+ G ++ L+ + LV
Sbjct: 570 DKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGN 629
Query: 874 ELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQSNSDKGNSKLIKEEERETGKV 933
E+ + S + S + + KL +E +
Sbjct: 630 EIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVP 689
Query: 934 GLHVYKIYCTEAYGWWGVVAVLLLSVAW------QGSLMAGDYWLSYETSEDHSMSFNPS 987
++I + W V + ++ + + + + N +
Sbjct: 690 PASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSN 749
Query: 988 LFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTT--PSGR 1045
LF ++ ++S + ++ + G + + +S+L +S+FD +G
Sbjct: 750 LFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGA 809
Query: 1046 ILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWP---TIFLVIPLAWANYW 1102
+ +R + D + + + L II+ Y W + ++P+
Sbjct: 810 LTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGV 869
Query: 1103 YRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRM 1162
LS + + + +E+I T+ + ++ F + R
Sbjct: 870 VEMKMLSGQALKDK-KELEGS--GKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRN 926
Query: 1163 DFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSL--NG--- 1217
+ + TF M + + +G L
Sbjct: 927 -----------AMKKAHVFGITFSFTQAMMYF---------SYAAAFRFGAYLVTQQLMT 966
Query: 1218 -----VLFWAIYMSCF-----------VENRMVSVERIKQFTEIPSEAAWKMEDRLPPPN 1261
++F AI VS I + E E L P
Sbjct: 967 FENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNM 1026
Query: 1262 WPAHGNVDLIDLQVRY--RSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLV 1319
GNV + Y R + P VL+G++L + G+ + +VG +G GKST++Q+ R
Sbjct: 1027 --LEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083
Query: 1320 EPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNI---DPIGQYSDEEIWK 1376
+P G + +DG +I L + LR++ GI+ QEP+LF+ ++ NI D S EEI +
Sbjct: 1084 DPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVR 1143
Query: 1377 SLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVD 1436
+ + + + + PDK ++ V D G S GQ+Q + + R +++ +L +DEAT+++D
Sbjct: 1144 AAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALD 1203
Query: 1437 SQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
++++ +Q + + T I IAHR+ T+ + D ++V+ G
Sbjct: 1204 TESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNG 1245
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 8e-41
Identities = 119/660 (18%), Positives = 250/660 (37%), Gaps = 103/660 (15%)
Query: 280 SPLKIDEIPSLSPQHRAERMSELFESKWPKPHEKCKHPVRTTLLRCF---WKEVAFTAFL 336
S + S + S E +L+ W F
Sbjct: 654 SGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFC 713
Query: 337 AIVRLCVMYVGPVLIQRFVD-FTSG-------KSSSFYEGYYLVL--ILLVAKFVEVFST 386
AI+ + V+ + V FT+G ++S+ + +L+L I + F++ F+
Sbjct: 714 AIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFT- 772
Query: 387 HQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQL 446
F + L +R + S+ R+ + S + G + +A DA Q+
Sbjct: 773 --FGKAGEILTKRLRYMVFKSMLRQDV--SWFDDPKNTTGALTTRLANDAAQVKG----- 823
Query: 447 HAVWLMPLQISVALILLYNCLGASVITTVVG------IIGVMIFVVMGTKRNNRFQFNVM 500
+++V + N +I+ + G ++ ++ + + + ++
Sbjct: 824 ----ATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAG----VVEMKML 875
Query: 501 KNRDSRMKA--------TNEMLNYMRVIKFQAWEDHFNKRILSFRES---------EFGW 543
+ + K E + R + E F + +S +
Sbjct: 876 SGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETM---YAQSLQIPYRNAMKKAH 932
Query: 544 LTKFMYSISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQ------E 597
+ +S + + ++A A FG L + T + +
Sbjct: 933 VFGITFSFTQ----------AMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAM 982
Query: 598 PIRNFPQSMISLSQAMISLARLDKYMLSRE----LVNESVERVEGCDDNIAVEVRDGVFS 653
+ ++A +S + + + ++ + + + + N+ + VF+
Sbjct: 983 AVGQVSSFAPDYAKATVSASHIIR-IIEKTPEIDSYSTQGLKPNMLEGNV--QFSGVVFN 1039
Query: 654 WDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT---- 709
+ L+ ++LE+KKG A+VG+ G GKS+++ + ++G V + G
Sbjct: 1040 YPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQ 1099
Query: 710 ---------TAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEY--- 757
V+Q + + +I ENI +G Y E+VR K+ + ++
Sbjct: 1100 LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAA---KEANIHQFIDS 1156
Query: 758 ---GDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR 814
T +G++G LSGGQKQRI +ARA+ + I LLD+ SA+D + + +E +
Sbjct: 1157 LPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES-EKVVQEALD 1215
Query: 815 GALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSME 874
A +G+T I++ H++ + N DLI+V++ G + + G + LL + ++V+ +
Sbjct: 1216 KAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKR 1275
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 259 bits (663), Expect = 2e-74
Identities = 116/564 (20%), Positives = 228/564 (40%), Gaps = 66/564 (11%)
Query: 948 WWGVVAVLLLSVAWQGSLMAGDYWLSY------ETSEDHSMSFNPSLFIGVYGSTAVLSM 1001
G++ + + S L ++ + + P + IG+ +L
Sbjct: 24 KAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLM----ILRG 79
Query: 1002 VILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFL 1061
+ + +Y ++ V K ++ ++ P++FFD +G +LSR + D +
Sbjct: 80 ITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSS 139
Query: 1062 PFFVGITVAMYITLLGIFIITCQYAWP---TIFLVIPLAWANYWYRGYYLSTSRELTRLD 1118
+ V +++G+FI+ Y+W + ++ P+ R +++
Sbjct: 140 SGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIV---SIAIRVVSKRFRSISKNM 196
Query: 1119 SITKAPVIHHFSESISGVMTIRAFGKQTT----FYQENVNRVNGNLRMDFHNNGSNE--- 1171
T V + + G + FG Q F + + ++M ++ S+
Sbjct: 197 QNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQ 256
Query: 1172 -----------WLGFRLELLGSFT---FCLATLFMILLPSSIIKPENVGLSLSYGLSLNG 1217
+ ++ S T + MI L + NV G
Sbjct: 257 LIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRG----- 311
Query: 1218 VLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRY 1277
M + + + + E K E + A G+++ ++ Y
Sbjct: 312 ---------------MAACQTLFAILDSEQE---KDEGKRVID--RATGDLEFRNVTFTY 351
Query: 1278 RSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG 1337
L+ I L I G+ + +VGR+GSGKST+ + R + G I++DG D+
Sbjct: 352 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT 411
Query: 1338 LHDLRSRFGIIPQEPVLFEGTVRSNI---DPIGQYSDEEIWKSLERCQLKDVVAAKPDKL 1394
L LR++ ++ Q LF TV +NI +YS E+I ++ D + + L
Sbjct: 412 LASLRNQVALVSQNVHLFNDTVANNIAYART-EEYSREQIEEAARMAYAMDFINKMDNGL 470
Query: 1395 DSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAAC 1454
D+++ ++G S GQRQ + + R +L+ S +L +DEAT+++D++++ IQ + E
Sbjct: 471 DTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR 530
Query: 1455 TIISIAHRIPTVMDCDRVIVVDAG 1478
T + IAHR+ T+ D ++VV+ G
Sbjct: 531 TSLVIAHRLSTIEQADEIVVVEDG 554
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 185 bits (472), Expect = 1e-49
Identities = 122/573 (21%), Positives = 235/573 (41%), Gaps = 59/573 (10%)
Query: 323 LRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVD--FTSGKSSSFYEGYYLVLILLVAKF 380
+ F + I+ L++ +D F S ++ L+++
Sbjct: 20 IAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLL---WMPLVVIGLMI 76
Query: 381 VEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLS 440
+ +++ ++ + + T+ L+ + + + G +++ + D++Q++
Sbjct: 77 LRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVA 136
Query: 441 DMMLQ-LHAVWLMPLQISVALI-LLYNCLGASVITTVVGIIGVMIFVVMGTKRNNRFQFN 498
L V I I + Y S+I V + ++ + + R
Sbjct: 137 SSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVV--LAPIVSIAIRVVSKRFRSISK 194
Query: 499 VMKNRDSRMKA-TNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIV 557
M+N ++ +ML + + ++ KR F + + M +S + I
Sbjct: 195 NMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKR---FDKVSNKMRLQGMKMVSASSI- 250
Query: 558 MWSTPV--LISTLTFATALLFGV------PLDAGSVFTTTTIFKILQEPIRNFPQSMISL 609
S P+ LI++L A L L AG++ + L P+++
Sbjct: 251 --SDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQF 308
Query: 610 SQAMISLARLDKYMLSRELVNE---SVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNI 666
+ M + L + S + +E ++R G +E R+ F++ L+NI
Sbjct: 309 QRGMAACQTLFAILDSEQEKDEGKRVIDRATG-----DLEFRNVTFTYPGR-EVPALRNI 362
Query: 667 NLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI-SGKVKVCGT-------------TAY 712
NL+I G A+VG GSGKS++ AS++ + I G + + G A
Sbjct: 363 NLKIPAGKTVALVGRSGSGKSTI-ASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL 421
Query: 713 VAQTSWIQNGTIEENILFGLP--MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINL 770
V+Q + N T+ NI + +R + E R+ + M+ G T IGE G+ L
Sbjct: 422 VSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 481
Query: 771 SGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL----KGKTIILVT 826
SGGQ+QRI +ARA+ +D I +LD+ SA+D + I AL K +T +++
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA-----ALDELQKNRTSLVIA 536
Query: 827 HQVDFLHNVDLILVMREGMIVQSGRYNALLNSG 859
H++ + D I+V+ +G+IV+ G ++ LL
Sbjct: 537 HRLSTIEQADEIVVVEDGIIVERGTHSELLAQH 569
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 257 bits (658), Expect = 7e-74
Identities = 112/565 (19%), Positives = 238/565 (42%), Gaps = 68/565 (12%)
Query: 948 WWGVVAVLLLSVAWQGSLMAGDYWLSY------ETSEDHSMSFNPSLFIGVYGSTAVLSM 1001
G+V + V + L +E + + P + +G+ +
Sbjct: 24 KAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLM----FVRG 79
Query: 1002 VILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFL 1061
+ +Y ++ V ++ +H P+ FFD +G +LSR + D +
Sbjct: 80 LSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGAT 139
Query: 1062 PFFVGITVAMYITLLGIFIITCQYAWP---TIFLVIPLAWANYWYRGYYLSTSRELTRLD 1118
+ V +++G+ + +W + +V P+ + + R+++R
Sbjct: 140 SRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVV---AFAISFVSKRFRKISRNM 196
Query: 1119 SITKAPVIHHFSESISGVMTIRAFGKQTT----FYQENVNRVNGNLRMDFHNNGSN---- 1170
V + + G + ++G Q F + + + +++ + ++
Sbjct: 197 QTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQ 256
Query: 1171 ----------EWLGFRLEL-----LGSFTFCLATLFMILLPSSIIKPENVGLSLSYGLSL 1215
+L + G+FT + +F ++ P +K +L+ S+
Sbjct: 257 MIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRP---LK------ALT---SV 304
Query: 1216 NGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQV 1275
+ M + + + ++ +E + + +G VD+ D+
Sbjct: 305 TSEF----------QRGMAACQTLFGLMDLETE---RDNGKYEAE--RVNGEVDVKDVTF 349
Query: 1276 RYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISL 1335
Y+ L ++ SI G+ + +VGR+GSGKST+ +F R + G I +DG D+
Sbjct: 350 TYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRD 409
Query: 1336 LGLHDLRSRFGIIPQEPVLFEGTVRSNI--DPIGQYSDEEIWKSLERCQLKDVVAAKPDK 1393
L +LR F ++ Q LF T+ +NI G+Y+ E+I ++ + + + P
Sbjct: 410 YKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQG 469
Query: 1394 LDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAA 1453
LD+++ ++G + S GQRQ + + R +L+ + +L +DEAT+++D++++ IQ + E
Sbjct: 470 LDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN 529
Query: 1454 CTIISIAHRIPTVMDCDRVIVVDAG 1478
T++ IAHR+ T+ D ++VVD G
Sbjct: 530 KTVLVIAHRLSTIEQADEILVVDEG 554
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 186 bits (475), Expect = 6e-50
Identities = 122/574 (21%), Positives = 232/574 (40%), Gaps = 61/574 (10%)
Query: 323 LRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVD--FTSGKSSSFYEGYYLVLILLVAKF 380
+R + + + ++ L++ +D F + +S+ L ++L F
Sbjct: 20 IRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLR---ILPFMILGLMF 76
Query: 381 VEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLS 440
V S ++ + + + L+ + + G +++ + D++Q++
Sbjct: 77 VRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVA 136
Query: 441 DMMLQ-LHAVWLMPLQISVALI-LLYNCLGASVITTVVG--IIGVMIFVVMGTKRNNRFQ 496
+ L ++ I L + +N S++ VV + + FV ++ +R
Sbjct: 137 GATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNM 196
Query: 497 FNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNII 556
M + S +ML +V+ ++ KR F + + M +S I
Sbjct: 197 QTAMGHVTSSA---EQMLKGHKVVLSYGGQEVERKR---FDKVSNSMRQQTMKLVSAQSI 250
Query: 557 VMWSTPV--LISTLTFATALLFGV------PLDAGSVFTTTTIFKILQEPIRNFPQSMIS 608
+ PV +I++L L L G+ + L P++
Sbjct: 251 ---ADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSE 307
Query: 609 LSQAMISLARLDKYMLSRELVNE---SVERVEGCDDNIAVEVRDGVFSWDDENGEECLKN 665
+ M + L M + ERV G V+V+D F++ + + L +
Sbjct: 308 FQRGMAACQTLFGLMDLETERDNGKYEAERVNG-----EVDVKDVTFTYQGKE-KPALSH 361
Query: 666 INLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI-SGKVKVCGT-------------TA 711
++ I +G A+VG GSGKS++ A++ + + SG + + G A
Sbjct: 362 VSFSIPQGKTVALVGRSGSGKSTI-ANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFA 420
Query: 712 YVAQTSWIQNGTIEENILFGLPMN--RAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGIN 769
V+Q + N TI NI + R + + R + +E M G T IGE G +
Sbjct: 421 LVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTS 480
Query: 770 LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL----KGKTIILV 825
LSGGQ+QR+ +ARA+ +D + +LD+ SA+D + I AL K KT++++
Sbjct: 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQA-----ALDELQKNKTVLVI 535
Query: 826 THQVDFLHNVDLILVMREGMIVQSGRYNALLNSG 859
H++ + D ILV+ EG I++ GR+ LL
Sbjct: 536 AHRLSTIEQADEILVVDEGEIIERGRHADLLAQD 569
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 257 bits (658), Expect = 9e-74
Identities = 116/547 (21%), Positives = 212/547 (38%), Gaps = 43/547 (7%)
Query: 950 GVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSMSFNPSLFIGVYGSTAVLSMVILVVRAY 1009
++ LL+ A G + + H ++ I +R Y
Sbjct: 30 PMLIPLLIKYAIDGVINNHALTTDEKVH--HLTIAIGIALFIFV----IVRPPIEFIRQY 83
Query: 1010 FVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITV 1069
K ++ + F+ G+++SR D F+ +
Sbjct: 84 LAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIW 143
Query: 1070 AMYITLLGIFIITCQYAWP---TIFLVIPL-AWANYWYRGYYLSTSRELTRLDSITKAPV 1125
IT++ I + P Y + G R+LTR S A V
Sbjct: 144 LDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGR----LRKLTRERSQALAEV 199
Query: 1126 IHHFSESISGVMTIRAFGKQ----TTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLG 1181
E + G+ +++F + F ++N N + L+ N S + +
Sbjct: 200 QGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAA----INTVT 255
Query: 1182 SFTFCLATLFMILLPSSIIKPE-NVGLSLSYGLSLNGVLFWAIYMSCFVENR----MVSV 1236
+ L I VG ++ + +LF + S+
Sbjct: 256 DIGPIIVIGVGAYL---AISGSITVGTLAAF-VGYLELLFGPLRRLVASFTTLTQSFASM 311
Query: 1237 ERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGE 1296
+R+ Q + + P G +D+ + +Y N +LK I LSI GE
Sbjct: 312 DRVFQLIDEDYDIKNG-VGAQPIE--IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGE 368
Query: 1297 KIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFE 1356
+ VG +G GKSTLI + R + + G+I+IDG +I LR++ G++ Q+ +LF
Sbjct: 369 TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS 428
Query: 1357 GTVRSNIDPIGQY-----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411
TV+ NI +DEE+ ++ + D + P D+ V + G S GQ+Q
Sbjct: 429 DTVKENI----LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 484
Query: 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDR 1471
L + R+ L + +L +DEAT+++D ++++ IQ + T + +AHR+ T+ D+
Sbjct: 485 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADK 544
Query: 1472 VIVVDAG 1478
++V++ G
Sbjct: 545 IVVIENG 551
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 7e-47
Identities = 130/577 (22%), Positives = 244/577 (42%), Gaps = 59/577 (10%)
Query: 323 LRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVD--FTSGKSSSFYEGY----YLVLILL 376
++ + + T + I++ + + P+LI+ +D + ++ + + + + L
Sbjct: 9 VKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALF 68
Query: 377 VAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDA 436
+ V + +Q I + LY LS + VGQ+++ + D
Sbjct: 69 IFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDV 128
Query: 437 QQLSDMMLQ-LHAVWLMPLQISVALILLYNCLGASVITTVVGIIGV--MIFVVMGTKRNN 493
+Q D +L L +WL + I +AL ++ V T+ + I V
Sbjct: 129 EQTKDFILTGLMNIWLDCITIIIALSIM---FFLDVKLTLAALFIFPFYILTVYVFFGRL 185
Query: 494 RFQFNVMKNRDSRMKAT-NEMLNYMRVIKFQAWEDH----FNKRILSFRESEFGWLTKFM 548
R + ++ +E + + V+K A ED+ F+K+ +F
Sbjct: 186 RKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTR--ALKHTRW 243
Query: 549 YSISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMIS 608
+ S I + I + L + G++ ++L P+R S +
Sbjct: 244 NAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTT 303
Query: 609 LSQAMISLARLDKYMLSRELVNES-----VERVEGCDDNIAVEVRDGVFSWDDENGEECL 663
L+Q+ S+ R+ + + + +E +G +++ F ++D N L
Sbjct: 304 LTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQG-----RIDIDHVSFQYND-NEAPIL 357
Query: 664 KNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI-SGKVKVCGT------------- 709
K+INL I+KG+ A VG G GKS+L +++ + + SG++ + G
Sbjct: 358 KDINLSIEKGETVAFVGMSGGGKSTL-INLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416
Query: 710 TAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVC---CLEKDLEMMEYGDQTEIGER 766
V Q + + + T++ENIL G P A EVV + + G TE+GER
Sbjct: 417 IGLVQQDNILFSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGER 474
Query: 767 GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL----KGKTI 822
G+ LSGGQKQR+ +AR + I +LD+ SA+D + S I + AL K +T
Sbjct: 475 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE-----ALDVLSKDRTT 529
Query: 823 ILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSG 859
++V H++ + + D I+V+ G IV++G + L+
Sbjct: 530 LIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ 566
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 230 bits (588), Expect = 2e-64
Identities = 118/510 (23%), Positives = 222/510 (43%), Gaps = 57/510 (11%)
Query: 997 AVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTN 1056
A++ V + F ++ + R +L +S + + +++R + D T
Sbjct: 73 ALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQ 132
Query: 1057 IDLFLPFFVGITVAMYITLLGI------FIITCQYAWPTIFLVIPLAWANYWYRGYYLST 1110
+ + + + + LL + I + + IFL+ P+ W
Sbjct: 133 LQNL--VMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPL 190
Query: 1111 SREL-TRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGS 1169
R++ D + + E++ GV +RAF ++ + EN + N +LR
Sbjct: 191 FRKIQESTDEVNRV-----VRENLLGVRVVRAFRREE-YENENFRKANESLRRSI----- 239
Query: 1170 NEWLGFRLELLGSFTFCLATLFMILLPSSII---------KPENVG-LS--LSYGLSLNG 1217
L F L + + +++ +G + +Y L
Sbjct: 240 -----ISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNY---LMQ 291
Query: 1218 VLFWAIYMSCFVENRM----VSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDL 1273
++F ++ M + N + S +R+ + E G+V ++
Sbjct: 292 IMF-SLMMIGNILNFIVRASASAKRVLEVLNEKPAIE---EADNALALPNVEGSVSFENV 347
Query: 1274 QVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDI 1333
+ RY NT VL G+ S+ G + V+G TGSGKSTL+ + RL++P GR+ +D +D+
Sbjct: 348 EFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 407
Query: 1334 SLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQY-----SDEEIWKSLERCQLKDVVA 1388
+ L DLR +PQE VLF GT++ N+ ++ +D+EI ++ + Q+ D +
Sbjct: 408 RTVKLKDLRGHISAVPQETVLFSGTIKENL----KWGREDATDDEIVEAAKIAQIHDFII 463
Query: 1389 AKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR 1448
+ P+ DS V G N+S GQ+Q L + R ++K ++L +D+ T+SVD T+ I ++
Sbjct: 464 SLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLK 523
Query: 1449 EEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
CT I +IPT + D+++V+ G
Sbjct: 524 RYTKGCTTFIITQKIPTALLADKILVLHEG 553
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 5e-43
Identities = 126/571 (22%), Positives = 234/571 (40%), Gaps = 56/571 (9%)
Query: 323 LRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVE 382
L+ +W +V + P L+ R VD + +L+L+VA +
Sbjct: 18 LKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVA-LIG 76
Query: 383 VFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDA---QQL 439
+ L L+RK L S S ++ + D Q L
Sbjct: 77 AVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNL 136
Query: 440 SDMMLQLHAVWLMPLQI--SVALILLYNCLGASVITTVVGIIGVMIFVVMGTKRNNRFQF 497
M+L++ V PL + + + N +SV+ ++ I ++ + K N F+
Sbjct: 137 VMMLLRI--VVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLT-KKGNPLFR- 192
Query: 498 NVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIV 557
+ ++ D + E L +RV++ E++ N+ FR++ L + IS ++
Sbjct: 193 KIQESTDEVNRVVRENLLGVRVVRAFRREEYENEN---FRKA-NESLRR--SIISAFSLI 246
Query: 558 MWSTPV--LISTLTFATALLFG-VPLDAGSVFT------TTTIFKILQEPIRNFPQSMIS 608
+++ P+ I + L FG V + + T + +I+ F MI
Sbjct: 247 VFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIM------FSLMMIG 300
Query: 609 -----LSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECL 663
+ +A S R+ + + + + E+ + + +V + F + + N + L
Sbjct: 301 NILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFE-NTDPVL 359
Query: 664 KNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------T 710
+N +K G L A++G GSGKS+L+ I + G+V+V
Sbjct: 360 SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419
Query: 711 AYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVC---CLEKDLEMMEYGDQTEIGERG 767
+ V Q + + +GTI+EN+ +G A E+V + + + G + + G
Sbjct: 420 SAVPQETVLFSGTIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGG 477
Query: 768 INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTH 827
N SGGQKQR+ +ARA+ + + +LDD S+VD T I + ++ KG T ++T
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI-LDGLKRYTKGCTTFIITQ 536
Query: 828 QVDFLHNVDLILVMREGMIVQSGRYNALLNS 858
++ D ILV+ EG + G + LL
Sbjct: 537 KIPTALLADKILVLHEGKVAGFGTHKELLEH 567
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 219 bits (561), Expect = 7e-61
Identities = 138/539 (25%), Positives = 228/539 (42%), Gaps = 103/539 (19%)
Query: 988 LFIGVYGSTAVLSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRIL 1047
+ +Y L+ ++ ++ + + ++ + P+ FFD TP G I+
Sbjct: 82 ILGTIY----ALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDII 137
Query: 1048 SRASTDQTNI-----DLFLPFFVGITVAMYITLLGIFIITCQYAWP---TIFLVIPLAWA 1099
SR D NI + + FF GI +TL G I+ + ++PL
Sbjct: 138 SRVINDVDNINNVLGNSIIQFFSGI-----VTLAGAVIMMFRVNVILSLVTLSIVPLTVL 192
Query: 1100 NYWY-----RGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVN 1154
R Y+ R L +L+ E ISG+ I+ F ++ E +
Sbjct: 193 ITQIVSSQTRKYFYENQRVLGQLNG--------IIEEDISGLTVIKLFTREEKE-MEKFD 243
Query: 1155 RVNGNLR----------------MDFHNN---GSNEWLGFRLELLGSFTFCLATLFMILL 1195
RVN +LR M+ NN G L L T F+
Sbjct: 244 RVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYS 303
Query: 1196 PSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMED 1255
+P N LS ++ ++ + S ERI + ++ E
Sbjct: 304 -RQFTRPLN---ELSNQFNM-------------IQMALASAERIFEILDLEEEKDDPDAV 346
Query: 1256 RLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVF 1315
L G ++ ++ Y P+ LK IT I G+K+ +VG TGSGK+T++ +
Sbjct: 347 ELREV----RGEIEFKNVWFSYDKKKPV-LKDITFHIKPGQKVALVGPTGSGKTTIVNLL 401
Query: 1316 FRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQY-----S 1370
R + G+I++DGIDI + LRS GI+ Q+ +LF TV+ N+ +Y +
Sbjct: 402 MRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENL----KYGNPGAT 457
Query: 1371 DEEIWKSLERCQLKDVVAAK-----------PDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419
DEEI AAK P+ ++++ D+G++ S GQRQLL + R
Sbjct: 458 DEEI-----------KEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAF 506
Query: 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
L + ++L +DEAT++VD++T+ IQ + + T I IAHR+ T+ + D +IV+ G
Sbjct: 507 LANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDG 565
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 7e-33
Identities = 117/580 (20%), Positives = 226/580 (38%), Gaps = 74/580 (12%)
Query: 323 LRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVE 382
LR + V + + P LI + +D F +LIL +
Sbjct: 32 LRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR-FDLLPRYMLILGTIYALT 90
Query: 383 VFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDM 442
L + L L+ K R+ G I++ + D ++++
Sbjct: 91 SLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNV 150
Query: 443 MLQ-----------LHAVWLMPLQISVALILLYNCLGASVITTVVGIIGVMIFVVMGTKR 491
+ L +M +++V L L+ + I+ + + +
Sbjct: 151 LGNSIIQFFSGIVTLAGAVIMMFRVNVILSLV-----------TLSIVPLTVLITQIVSS 199
Query: 492 NNRFQFNVMKNRDSRMKA-TNEMLNYMRVIK-F---QAWEDHFNKRILSFRESEFGWLTK 546
R F + ++ E ++ + VIK F + + F++ S R+ G +
Sbjct: 200 QTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKV--GTKAQ 257
Query: 547 FMYSISGNIIVMWSTPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQ------EPIR 600
+ + +++ L FA FG L + T TI + P+
Sbjct: 258 IFSGV------LPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLN 311
Query: 601 NFPQSMISLSQAMISLAR----LDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSWDD 656
+ A+ S R LD + + V G +E ++ FS+D
Sbjct: 312 ELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRG-----EIEFKNVWFSYDK 366
Query: 657 ENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI-SGKVKVCGT------ 709
+ + LK+I IK G A+VG GSGK+++ ++L + + G++ V G
Sbjct: 367 K--KPVLKDITFHIKPGQKVALVGPTGSGKTTI-VNLLMRFYDVDRGQILVDGIDIRKIK 423
Query: 710 -------TAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVC---CLEKDLEMMEYGD 759
V Q + + + T++EN+ +G P A E+ + ++ + G
Sbjct: 424 RSSLRSSIGIVLQDTILFSTTVKENLKYGNP--GATDEEIKEAAKLTHSDHFIKHLPEGY 481
Query: 760 QTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKG 819
+T + + G +LS GQ+Q + + RA + I +LD+ S VD T I + + ++G
Sbjct: 482 ETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI-QAAMWKLMEG 540
Query: 820 KTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSG 859
KT I++ H+++ + N DLI+V+R+G IV+ G+++ L+
Sbjct: 541 KTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKR 580
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 205 bits (524), Expect = 6e-60
Identities = 74/228 (32%), Positives = 130/228 (57%), Gaps = 27/228 (11%)
Query: 1265 HGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGG 1324
H ++ +++ RY+ ++P++L I LSI GE IG+VGR+GSGKSTL ++ R P G
Sbjct: 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1325 RIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNI---DPIGQYSDEEIWKSLERC 1381
+++IDG D++L + LR + G++ Q+ VL ++ NI +P S E++
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKV------- 115
Query: 1382 QLKDVVAAK-----------PDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDE 1430
+ AAK + +++V + G S GQRQ + + R ++ + ++L DE
Sbjct: 116 ----IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE 171
Query: 1431 ATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
AT+++D +++ I R + + T+I IAHR+ TV + DR+IV++ G
Sbjct: 172 ATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKG 219
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 6e-35
Identities = 70/243 (28%), Positives = 113/243 (46%), Gaps = 31/243 (12%)
Query: 634 ERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASI 693
+ R+ F + + L NINL IK+G++ IVG GSGKS+L I
Sbjct: 2 HHHHH-----DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
Query: 694 LGEMHKISGKVKVCGT-------------TAYVAQTSWIQNGTIEENILFGLPMNRAKYG 740
+G+V + G V Q + + N +I +NI P
Sbjct: 56 QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVE 113
Query: 741 EVVRVCCLEKD------LEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLD 794
+V+ K + + G T +GE+G LSGGQ+QRI +ARA+ + I + D
Sbjct: 114 KVIYAA---KLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFD 170
Query: 795 DVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNA 854
+ SA+D + I + KG+T+I++ H++ + N D I+VM +G IV+ G++
Sbjct: 171 EATSALDYESEHVI-MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKE 229
Query: 855 LLN 857
LL+
Sbjct: 230 LLS 232
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 204 bits (522), Expect = 7e-59
Identities = 70/253 (27%), Positives = 135/253 (53%), Gaps = 17/253 (6%)
Query: 1233 MVSVERIKQFTEIPSEAAWKMEDRLP--PPNWPAHGNVDLIDLQVRYRSNTPLVLKGITL 1290
+ +E + + +E ++D P P G ++ ++ Y L+ ++
Sbjct: 22 FIDMENMFDLLKEETE----VKDL-PGAGPLRFQKGRIEFENVHFSYADGRE-TLQDVSF 75
Query: 1291 SIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQ 1350
++ G+ + +VG +G+GKST++++ FR + S G I IDG DIS + LRS G++PQ
Sbjct: 76 TVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQ 135
Query: 1351 EPVLFEGTVRSNIDPIGQY-----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNW 1405
+ VLF T+ NI +Y ++E+ + + + D + A P+ + V + G
Sbjct: 136 DTVLFNDTIADNI----RYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKL 191
Query: 1406 SVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPT 1465
S G++Q + + R +LK ++ +DEAT+++D+ + IQ + + A T I +AHR+ T
Sbjct: 192 SGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLST 251
Query: 1466 VMDCDRVIVVDAG 1478
V++ D+++V+ G
Sbjct: 252 VVNADQILVIKDG 264
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 2e-38
Identities = 77/287 (26%), Positives = 133/287 (46%), Gaps = 33/287 (11%)
Query: 595 LQEPIRNFPQSMISLSQAMISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDGVFSW 654
+ + S I + M +L+ E E V+ + + G +
Sbjct: 4 SHHHHHHSSGLVPRGSHMFIDMEN----MF--DLLKEETE-VKDLPGAGPLRFQKGRIEF 56
Query: 655 DD-----ENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI-SGKVKVCG 708
++ +G E L++++ + G A+VG G+GKS++L +L + I SG +++ G
Sbjct: 57 ENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTIL-RLLFRFYDISSGCIRIDG 115
Query: 709 T-------------TAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVC---CLEKDL 752
V Q + + N TI +NI +G A EV + +
Sbjct: 116 QDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV--TAGNDEVEAAAQAAGIHDAI 173
Query: 753 EMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKEC 812
G +T++GERG+ LSGG+KQR+ +AR + + I LLD+ SA+D I +
Sbjct: 174 MAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI-QAS 232
Query: 813 VRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSG 859
+ +T I+V H++ + N D ILV+++G IV+ GR+ ALL+ G
Sbjct: 233 LAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRG 279
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 2e-58
Identities = 66/205 (32%), Positives = 115/205 (56%), Gaps = 3/205 (1%)
Query: 1276 RYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISL 1335
Y + +L+ I+ I G +G GKST+ + R +P+ G I IDG I
Sbjct: 10 AYDDSEQ-ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDN 68
Query: 1336 LGLHDLRSRFGIIPQEPVLFEGTVRSNID--PIGQYSDEEIWKSLERCQLKDVVAAKPDK 1393
+ L + RS+ G + Q+ + GT+R N+ G Y+DE++W+ L+ + V PD+
Sbjct: 69 ISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQ 128
Query: 1394 LDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAA 1453
L++ V + G S GQRQ L + R L++ ++L +DEATAS+DS++++ +Q+ +
Sbjct: 129 LNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKG 188
Query: 1454 CTIISIAHRIPTVMDCDRVIVVDAG 1478
T + IAHR+ T++D D++ ++ G
Sbjct: 189 RTTLVIAHRLSTIVDADKIYFIEKG 213
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 8e-37
Identities = 66/236 (27%), Positives = 124/236 (52%), Gaps = 30/236 (12%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI-SGK 703
+ R F++DD E+ L++I+ E + + A G G GKS++ S+L ++ +G+
Sbjct: 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTI-FSLLERFYQPTAGE 58
Query: 704 VKVCGT-------------TAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVC---C 747
+ + G +V+Q S I GTI EN+ +GL + ++ +V
Sbjct: 59 ITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGD-YTDEDLWQVLDLAF 117
Query: 748 LEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSD 807
+E M TE+GERG+ +SGGQ+QR+ +ARA ++ I +LD+ +++D+ +
Sbjct: 118 ARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSES--- 174
Query: 808 IFKECVRGAL----KGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSG 859
+ V+ AL KG+T +++ H++ + + D I + +G I SG++N L+ +
Sbjct: 175 --ESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH 228
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 192 bits (491), Expect = 2e-55
Identities = 73/219 (33%), Positives = 122/219 (55%), Gaps = 11/219 (5%)
Query: 1266 GNVDLIDLQVRYRSNTP-LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGG 1324
N++ D+ Y T LK I I G +VG TGSGKST+ ++ +R + G
Sbjct: 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEG- 74
Query: 1325 RIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQY-----SDEEIWKSLE 1379
I I G +++ + +RS GI+PQ+ +LF T++ NI Y +DEE+ K+ +
Sbjct: 75 DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI----LYGKLDATDEEVIKATK 130
Query: 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
QL D + A P K D++V + G S G+RQ + + R +LK +++ DEAT+S+DS+T
Sbjct: 131 SAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT 190
Query: 1440 DAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
+ Q+ + + T+I IAHR+ T+ + +I+++ G
Sbjct: 191 EYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKG 229
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 6e-39
Identities = 67/248 (27%), Positives = 121/248 (48%), Gaps = 20/248 (8%)
Query: 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGK 703
+E D FS+ + LK+IN I G A+VG GSGKS++ A +L + G
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTI-AKLLYRFYDAEGD 75
Query: 704 VKVCGT-------------TAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVC---C 747
+K+ G V Q + + N TI+ NIL+G A EV++
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL--DATDEEVIKATKSAQ 133
Query: 748 LEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSD 807
L +E + T +G +G+ LSGG++QRI +AR + +D I + D+ S++D+ T
Sbjct: 134 LYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYL 193
Query: 808 IFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVA 867
++ V K +T+I++ H++ + + + I+++ +G IV+ G + LL ++ +
Sbjct: 194 F-QKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWN 252
Query: 868 AHETSMEL 875
++
Sbjct: 253 MQSGGNDI 260
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 3e-48
Identities = 64/220 (29%), Positives = 114/220 (51%), Gaps = 7/220 (3%)
Query: 1265 HGNVDLIDLQVRY--RSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS 1322
G V D+ Y N VL+G+T +++ G+ +VG GSGKST+ + L +P+
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQ-VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 1323 GGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNID--PIGQYSDEEIWKSLER 1380
GG++++DG + H L ++ + QEP+LF + R NI + EEI
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1381 CQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTD 1440
D ++ P D+ V ++G+ S GQRQ + L R +++ RLL +D AT+++D+
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 1441 AEIQRIIRE--EFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
+QR++ E E+A+ T++ I ++ ++ + G
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEG 232
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 5e-34
Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 34/237 (14%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------- 709
L+ + + G +TA+VG GSGKS++ A + GKV + G
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94
Query: 710 TAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKD------LEMMEYGDQTEI 763
A V Q + + ENI +GL E+ V + + G TE+
Sbjct: 95 VAAVGQEPLLFGRSFRENIAYGLTRT-PTMEEITAVA---MESGAHDFISGFPQGYDTEV 150
Query: 764 GERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL------ 817
GE G LSGGQ+Q + LARA+ + + +LD+ SA+DA + V+ L
Sbjct: 151 GETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN-----QLRVQRLLYESPEW 205
Query: 818 KGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAAHETSME 874
+T++L+T Q+ IL ++EG + + G + L+ G + ++V A +
Sbjct: 206 ASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMVEALAAPSD 262
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 9e-31
Identities = 67/225 (29%), Positives = 105/225 (46%), Gaps = 34/225 (15%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
+L Y T LKGI ++I GE ++G G GKSTL Q F +++PS GRI+ D
Sbjct: 12 ELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNK 70
Query: 1332 DISL--LGLHDLRSRFGIIPQEPV--LFEGTVRS-------NIDPIGQYSDEEIWK---- 1376
I G+ LR GI+ Q+P LF +V N+ + ++EI K
Sbjct: 71 PIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM----KLPEDEIRKRVDN 126
Query: 1377 SLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVD 1436
+L+R ++ + L S GQ++ + + V++ ++L +DE TA +D
Sbjct: 127 ALKRTGIEHLKDKPTHCL-----------SFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 175
Query: 1437 SQTDAEIQRIIRE--EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
+EI +++ E + TII H I V CD V V+ G
Sbjct: 176 PMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEG 220
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 55/230 (23%), Positives = 107/230 (46%), Gaps = 27/230 (11%)
Query: 641 DNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKI 700
++ ++V + +++ D G LK IN+ IK+G++TAI+G G GKS+L + G +
Sbjct: 4 EDYILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS 61
Query: 701 SGKVKVCGT-TAYVAQTSWI---------QN-------GTIEENILFGLPMNRAKYGEVV 743
SG++ Y + Q+ ++ +++ FG +N + +
Sbjct: 62 SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFG-AVNMKLPEDEI 120
Query: 744 RVCCLEKDLEMMEYGDQTEIGERGI-NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDA 802
R ++ ++ + ++ LS GQK+R+ +A + + + +LD+ + +D
Sbjct: 121 R----KRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDP 176
Query: 803 HTGSDIFKECVR-GALKGKTIILVTHQVDF-LHNVDLILVMREGMIVQSG 850
S+I K V G TII+ TH +D D + VM+EG ++ G
Sbjct: 177 MGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQG 226
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 2e-30
Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 17/216 (7%)
Query: 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKIS 701
N A+ V + F + + +N ++ KGD+ A++G G GKS+LL +LG I
Sbjct: 2 NKALSVENLGFYYQ--AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59
Query: 702 GKVKVCGTTAYVAQT-SWIQNGTIEENILFGLPMNRAKY-GEVVRVCCLEKDLEM----M 755
GK++V + +V Q S ++ + +L G R+ + + D ++ +
Sbjct: 60 GKIEVYQSIGFVPQFFSSPFAYSVLDIVLMG----RSTHINTFAKPK--SHDYQVAMQAL 113
Query: 756 EYGDQTEIGERGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR 814
+Y + T + +R LSGGQ+Q I +ARA+ +C + LLD+ SA+D + +
Sbjct: 114 DYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLID 173
Query: 815 -GALKGKTIILVTHQVDF-LHNVDLILVMREGMIVQ 848
+ T++ THQ + + + L++ +
Sbjct: 174 LAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF 209
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 9e-21
Identities = 42/223 (18%), Positives = 96/223 (43%), Gaps = 40/223 (17%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
+L Y+ + + + ++ G+ + V+G+ G GKSTL+ + + P G+I
Sbjct: 9 NLGFYYQ-AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI----- 62
Query: 1332 DISLLGLHDLRSRFGIIPQEPVL-FEGTVR--------SNIDPIGQYS--DEEI-WKSLE 1379
++ G +PQ F +V ++I+ + D ++ ++L+
Sbjct: 63 --------EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALD 114
Query: 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
L +A + SL SG GQRQL+ + R + +L+ +DE T+++D
Sbjct: 115 YLNLTH-LAKRE--FTSL---SG-----GQRQLILIARAIASECKLILLDEPTSALDLAN 163
Query: 1440 DAEIQRIIRE--EFAACTIISIAHRIPTVMD-CDRVIVVDAGL 1479
+ ++ + + T++ H+ V+ ++ ++++
Sbjct: 164 QDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN 206
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-29
Identities = 60/226 (26%), Positives = 108/226 (47%), Gaps = 29/226 (12%)
Query: 1268 VDLIDLQVRYRSNTPL---VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGG 1324
++++++ + TPL L+ ++L I+ GE + V G TGSGKSTL+Q+ L+EP+ G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 1325 RIIIDGIDISLLGLHDLRSRFGIIPQEPV--LFEGTVRSNID--PIGQYSDEEIWK---- 1376
++ DG +++R GI Q P F V + Y D +
Sbjct: 63 DVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKK 119
Query: 1377 SLERCQL--KDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATAS 1434
++E L P L SG G+++ + + V++ +L +DE
Sbjct: 120 AMEFVGLDFDSFKDRVPFFL------SG-----GEKRRVAIASVIVHEPDILILDEPLVG 168
Query: 1435 VDSQTDAEIQRIIRE-EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
+D + ++ RI+ + + T+I I+H I TV++ DRV+V++ G
Sbjct: 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKG 214
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 28/227 (12%)
Query: 644 AVEVRDGVFSWDDENGEEC--LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKIS 701
+EV + + E L+N++L I +G+ + G GSGKS+LL + G + S
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 702 GKVKVCGTTAYVAQTSWI--------QN-------GTIEENILFGLPMNRAKYGEVV-RV 745
G V G + I Q + + + F N + V V
Sbjct: 62 GDVLYDGERKKGYE---IRRNIGIAFQYPEDQFFAERVFDEVAFA-VKNFYPDRDPVPLV 117
Query: 746 CCLEKDLEMMEYGDQTEIGERG-INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHT 804
+K +E + D +R LSGG+K+R+ +A + + DI +LD+ +D
Sbjct: 118 ---KKAMEFVGL-DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173
Query: 805 GSDIFKECVRGALKGKTIILVTHQVDF-LHNVDLILVMREGMIVQSG 850
+D+ + + GKT+IL++H ++ +++VD ++V+ +G V G
Sbjct: 174 KTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDG 220
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 3e-29
Identities = 51/219 (23%), Positives = 91/219 (41%), Gaps = 30/219 (13%)
Query: 645 VEVRDGVFSWDDENGE-ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGK 703
+++++ + + E L+NINLE+ G+ I+G GSGK++LL +I G + SG
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPYSGN 59
Query: 704 VKVCGT--------TAYVAQ--TSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLE 753
+ + G Y ++ T+ + + + + + L+
Sbjct: 60 IFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEM------LK 113
Query: 754 MMEYGDQTEIGERGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKEC 812
++ G+ EI R + LS GQ ++ + A+ +I LD+ F VDA I +
Sbjct: 114 ALKLGE--EILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRY- 170
Query: 813 VRGALK--GKTIILVTH-QVDFLHNVDLILVMREGMIVQ 848
+K GK ILVTH + G +Q
Sbjct: 171 ----IKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQ 205
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 29/220 (13%)
Query: 1268 VDLIDLQVRYRSNTP--LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGR 1325
+ L ++ + L+ I L ++G EK+ ++G GSGK+TL++ L+ P G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNG-EKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1326 IIIDGIDISLLGLHDLRSRFGIIPQEPVLF--EGTVRSNID---PIGQYSDEEIWKSLER 1380
I I+G+++ +R+ P + TV + + + + L+
Sbjct: 60 IFINGMEVR-----KIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 1381 CQLKDVVAAK-PDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
+L + + + KL S GQ L+ + ++ +DE +VD+
Sbjct: 115 LKLGEEILRRKLYKL------SA-----GQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 1440 DAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
I R I+E I + H + + + G
Sbjct: 164 RHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVG 201
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 4e-29
Identities = 42/204 (20%), Positives = 84/204 (41%), Gaps = 30/204 (14%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
VL+ IT++I G + G G GK+TL++ ++P G II +G+ I+ ++
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKG 78
Query: 1344 RFGIIPQEPVLFEG-TVRSNIDPIGQY-----SDEEIWKSLERCQLKDVVAAKPDKLDSL 1397
+ +P+E ++ +V + + + EI +LE ++ D KL L
Sbjct: 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD----LKKKLGEL 134
Query: 1398 VADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACT 1455
S G + + L +L ++ + +D+ ++D + ++ + I E
Sbjct: 135 --------SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 1456 IISIAHRIPTVMD-CDRVIVVDAG 1478
IIS + CD +
Sbjct: 187 IISSRE----ELSYCDVNENLHKY 206
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 6e-20
Identities = 36/207 (17%), Positives = 89/207 (42%), Gaps = 28/207 (13%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTA------- 711
+ L+ I + I+KG++ G G GK++LL +I + + G++ G
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKI 80
Query: 712 -YVAQTSWI-QNGTIEENILF-----GLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIG 764
++ + + + ++E+ + G+ +N+ + + + + +E+++ +
Sbjct: 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDAL------ESVEVLDLKKKLG-- 132
Query: 765 ERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIIL 824
LS G +R+QLA + + +IY+LDD A+D + + K + + +I+
Sbjct: 133 ----ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII 188
Query: 825 VTHQVDFLHNVDLILVMREGMIVQSGR 851
+ + L D+ + + +
Sbjct: 189 SSREE--LSYCDVNENLHKYSTKIDKK 213
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 5e-28
Identities = 53/250 (21%), Positives = 100/250 (40%), Gaps = 44/250 (17%)
Query: 640 DDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK 699
++ +++ G+ LK I+ +I KGD + G G+GK++LL +
Sbjct: 17 GSHMLIQLDQIGRMK---QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA 73
Query: 700 ISGKVKVCGTT---------------AYVAQT---SWIQNGTIEENILFGLPMNRAKYGE 741
SG V + G +V+ + + + + + ++ G + Y +
Sbjct: 74 TSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQD 133
Query: 742 V-----VRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDV 796
+ L K + M Q IG LS G+KQR+ +ARA+ + +LD+
Sbjct: 134 IDDEIRNEAHQLLKLVGMSAKAQQY-IGY----LSTGEKQRVMIARALMGQPQVLILDEP 188
Query: 797 FSAVDAHTGSDIFKECVRGAL-------KGKTIILVTHQVDF-LHNVDLILVMREGMIVQ 848
+ +D +E + L +I VTH ++ N IL++++G +Q
Sbjct: 189 AAGLDFIA-----RESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQ 243
Query: 849 SGRYNALLNS 858
G +L S
Sbjct: 244 QGAVEDILTS 253
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 3e-26
Identities = 40/231 (17%), Positives = 84/231 (36%), Gaps = 33/231 (14%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+ L + + T +LK I+ I G+K + G G+GK+TL+ + + G +
Sbjct: 22 IQLDQIGRMKQGKT--ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79
Query: 1328 IDGIDISLLG--LHDLRSRFGIIPQE---PVLFEGTVRSNI-----DPIG---QYSDEEI 1374
+ G +G +R G + V + IG DE
Sbjct: 80 LFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR 139
Query: 1375 WKS---LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEA 1431
++ L+ + L S G++Q + + R ++ ++L +DE
Sbjct: 140 NEAHQLLKLVGMSAKAQQYIGYL-----------STGEKQRVMIARALMGQPQVLILDEP 188
Query: 1432 TASVDSQTDAEIQRIIRE---EFAACTIISIAHRIPTV-MDCDRVIVVDAG 1478
A +D + I+ + +I + H I + + +++++ G
Sbjct: 189 AAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDG 239
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 51/221 (23%), Positives = 104/221 (47%), Gaps = 24/221 (10%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
V + DL+ R +LKGI+ I GE G++G G+GK+T +++ L++PS G +
Sbjct: 16 VVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNIDPIGQY-------SDEEIWKSLE 1379
+ G ++ + H++R +P+E + + + + +E + ++ E
Sbjct: 74 VFGKNV-VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATE 132
Query: 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
L +K+ V +S G + L + R ++ + RL +DE T+ +D
Sbjct: 133 IAGLG-------EKIKDRV----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLN 181
Query: 1440 DAEIQRIIREEFAA-CTIISIAHRIPTV-MDCDRVIVVDAG 1478
E+++I+++ TI+ +H + V CDR+ ++ G
Sbjct: 182 AREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNG 222
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 1e-12
Identities = 49/210 (23%), Positives = 100/210 (47%), Gaps = 34/210 (16%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------TT 710
LK I+ EI++G++ ++G G+GK++ L I + SG V V G
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90
Query: 711 AYVAQTSWI-QNGTIEENILF-----GLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIG 764
+Y+ + + +N E + F + + V E+ E+ G+ +I
Sbjct: 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIE----EMV---ERATEIAGLGE--KIK 141
Query: 765 ERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRG-ALKGKTII 823
+R S G +++ +ARA+ + + +LD+ S +D ++ ++ ++ + +G TI+
Sbjct: 142 DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV-RKILKQASQEGLTIL 200
Query: 824 LVTH---QVDFLHNVDLILVMREGMIVQSG 850
+ +H +V+FL D I ++ G IV++G
Sbjct: 201 VSSHNMLEVEFL--CDRIALIHNGTIVETG 228
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-23
Identities = 61/228 (26%), Positives = 104/228 (45%), Gaps = 29/228 (12%)
Query: 1268 VDLIDLQVRYRSNTPLV--LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGR 1325
+ L ++ + T + L ++L + G+ GV+G +G+GKSTLI+ L P+ G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 1326 IIIDGIDISLL---GLHDLRSRFGIIPQEPVLFEG-TVRSNID-P--IGQYSDEEIWKS- 1377
+++DG +++ L L R + G+I Q L TV N+ P + +E+ +
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 1378 ---LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATAS 1434
L L D + P L SG GQ+Q + + R + + ++L D+AT++
Sbjct: 145 TELLSLVGLGDKHDSYPSNL------SG-----GQKQRVAIARALASNPKVLLCDQATSA 193
Query: 1435 VDSQTDAEI---QRIIREEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
+D T I + I TI+ I H + V CD V V+ G
Sbjct: 194 LDPATTRSILELLKDINRRLGL-TILLITHEMDVVKRICDCVAVISNG 240
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 3e-15
Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 41/217 (18%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT--TAYVAQT---- 716
L N++L + G + ++G G+GKS+L+ + G V V G T
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 717 -----------SWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGE 765
+ + + T+ N+ P+ + + E++ +G+
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVAL--PLELDNTPKDEVK---RRVTELLSL---VGLGD 155
Query: 766 RG----INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK--- 818
+ NLSGGQKQR+ +ARA+ + + L D SA+D T I + LK
Sbjct: 156 KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE-----LLKDIN 210
Query: 819 ---GKTIILVTHQVDFLHNV-DLILVMREGMIVQSGR 851
G TI+L+TH++D + + D + V+ G +++
Sbjct: 211 RRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-22
Identities = 38/234 (16%), Positives = 81/234 (34%), Gaps = 27/234 (11%)
Query: 1250 AWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKS 1309
A + + ++ VL E + ++G G+GK+
Sbjct: 333 ALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKT 392
Query: 1310 TLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPV--LFEGTVRSNIDPIG 1367
TLI++ ++P G+ I ++S+ + V LF +R
Sbjct: 393 TLIKLLAGALKPDEGQDIPKL-NVSM-----KPQKIAPKFPGTVRQLFFKKIRGQFL--- 443
Query: 1368 QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLF 1427
+ + ++ ++ D++ + L SG G+ Q + + + + +
Sbjct: 444 --NPQFQTDVVKPLRIDDIIDQEVQHL------SG-----GELQRVAIVLALGIPADIYL 490
Query: 1428 MDEATASVDSQTDAEIQRIIRE--EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
+DE +A +DS+ ++IR T + H D+VIV +
Sbjct: 491 IDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGI 544
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 4e-20
Identities = 42/225 (18%), Positives = 89/225 (39%), Gaps = 35/225 (15%)
Query: 1276 RYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGID--- 1332
RY +N+ + G+ +G+VG G GKST +++ +P+ GR
Sbjct: 86 RYSANS--FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEI 143
Query: 1333 ISLLGLHDLRSRFG--------------IIPQEPVLFEGTVRSNIDPIGQYSDE---EIW 1375
I +L++ F + P +G V+ + + ++ ++
Sbjct: 144 IKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVK 203
Query: 1376 KSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASV 1435
+ ++ QL++V+ +KL SG G+ Q +G ++ + + DE ++ +
Sbjct: 204 RYIKILQLENVLKRDIEKL------SG-----GELQRFAIGMSCVQEADVYMFDEPSSYL 252
Query: 1436 DSQTDAEIQRIIREEFAA-CTIISIAHRIPTVMD-CDRVIVVDAG 1478
D + +IIR A +I + H + + D V ++
Sbjct: 253 DVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGV 297
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 5e-20
Identities = 43/218 (19%), Positives = 86/218 (39%), Gaps = 24/218 (11%)
Query: 641 DNIAVEVRDGVFSWDD---ENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEM 697
+++ + FS+ G+ L E ++ ++G G+GK++L+ + G +
Sbjct: 343 EDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL 402
Query: 698 HKISGKVKVCGTTAYVAQTSWIQ-NGTIEENILFGLP---MNRAKYGEVVRVCCLEKDLE 753
G+ + Q + GT+ + + +N +VV K L
Sbjct: 403 KPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVV------KPLR 456
Query: 754 MMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTG---SDIFK 810
+ + DQ E+ LSGG+ QR+ + A+ DIYL+D+ + +D+ S + +
Sbjct: 457 IDDIIDQ-EVQH----LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511
Query: 811 ECVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIV 847
+ KT +V H + D ++V
Sbjct: 512 RFILH--NKKTAFIVEHDFIMATYLADKVIVFEGIPSK 547
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 2e-17
Identities = 41/212 (19%), Positives = 74/212 (34%), Gaps = 29/212 (13%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQN- 721
+ + G + +VGT G GKS+ L + G+ G+ + +
Sbjct: 93 KLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSEL 152
Query: 722 GTIEENILFGLPM-----------NRAKYGEVVRVCCL---------EKDLEMMEYGDQT 761
+L RA G V +V L E ++
Sbjct: 153 QNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLE 212
Query: 762 EIGERGI-NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTG---SDIFKECVRGAL 817
+ +R I LSGG+ QR + + Q+ D+Y+ D+ S +D + I + +
Sbjct: 213 NVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA--- 269
Query: 818 KGKTIILVTHQVDFLHNV-DLILVMREGMIVQ 848
K +I V H + L + D + ++ V
Sbjct: 270 PTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 6e-21
Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 18/209 (8%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW 718
G L+ EI+KG++ IVG G GK++ + + G GKV+ T AY Q
Sbjct: 368 GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIK 427
Query: 719 IQ-NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQR 777
+ GT+ E L ++ +K L K L +++ D+ + + LSGG+ QR
Sbjct: 428 AEYEGTVYE--LLSK-IDSSKLNSNFYKTELLKPLGIIDLYDR-NVED----LSGGELQR 479
Query: 778 IQLARAVYQDCDIYLLDDVFSAVDAHTG---SDIFKECVRGALKGKTIILVTHQVDFLHN 834
+ +A + +D DIYLLD+ + +D S + + KT ++V H V +
Sbjct: 480 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN--EKTALVVEHDVLMIDY 537
Query: 835 V-DLILVMREGMIVQSGRYNAL--LNSGM 860
V D ++V EG + GR + GM
Sbjct: 538 VSDRLIVF-EGEPGRHGRALPPMGMREGM 565
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 2e-18
Identities = 50/254 (19%), Positives = 101/254 (39%), Gaps = 40/254 (15%)
Query: 1237 ERIKQFTE--IPSEAAWKMEDRLPPPNWPAHGNVD---LIDLQVRYRSNTPLVLKGITLS 1291
I +F + + E + +V+ L++ + L+
Sbjct: 319 NGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGE 378
Query: 1292 IHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQE 1351
I GE IG+VG G GK+T +++ + EP+ G++ D ++ PQ
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL-TVAY------------KPQY 425
Query: 1352 PVL-FEGTVRSNI-DPIGQYSDEEIWKS--LERCQLKDVVAAKPDKLDSLVADSGDNWSV 1407
+EGTV + + +K+ L+ + D+ + L SG
Sbjct: 426 IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDL------SG----- 474
Query: 1408 GQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR---EEFAACTIISIAHRIP 1464
G+ Q + + +L+ + + +DE +A +D + + R IR E+ ++ + H +
Sbjct: 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV-VEHDV- 532
Query: 1465 TVMD--CDRVIVVD 1476
++D DR+IV +
Sbjct: 533 LMIDYVSDRLIVFE 546
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 2e-18
Identities = 44/223 (19%), Positives = 88/223 (39%), Gaps = 36/223 (16%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGR------ 1325
D RY N + + G +G+VG G+GK+T +++ + P+
Sbjct: 96 DCVHRYGVNA--FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWD 153
Query: 1326 IIIDGIDISLLGLHDLRSR---FGIIPQE------PVLFEGTVRSNIDPIGQYSD-EEIW 1375
+I + L + R + + + P +G VR + + + EE+
Sbjct: 154 NVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVV 213
Query: 1376 KSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASV 1435
K LE + D + +L SG G+ Q + + +L+ + F DE ++ +
Sbjct: 214 KELELENVLD---RELHQL------SG-----GELQRVAIAAALLRKAHFYFFDEPSSYL 259
Query: 1436 DSQTDAEIQRIIREEFAA--CTIISIAHRIPTVMD-CDRVIVV 1475
D + ++ R+IR A ++ + H + + D + VV
Sbjct: 260 DIRQRLKVARVIR-RLANEGKAVLVVEHDLAVLDYLSDVIHVV 301
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 2e-15
Identities = 41/213 (19%), Positives = 85/213 (39%), Gaps = 36/213 (16%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEM------HKISGKVKVCGTTAYVAQT 716
+ +K G + IVG G+GK++ + + G++ S + Q
Sbjct: 107 VLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQN 166
Query: 717 SW--IQNGTIEENILFGLPMN----RAKYGEVVRVCCLEKDLEMMEYGDQTE------IG 764
+ ++NG I +A G+V + L+K E+ ++ + + +
Sbjct: 167 YFERLKNGEIRPV--VKPQYVDLLPKAVKGKVREL--LKKVDEVGKFEEVVKELELENVL 222
Query: 765 ERGI-NLSGGQKQRIQLARAVYQDCDIYLLD------DVFSAVDAHTGSDIFKECVRGAL 817
+R + LSGG+ QR+ +A A+ + Y D D+ + + + +
Sbjct: 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKV---ARVIRRLAN--- 276
Query: 818 KGKTIILVTHQVDFLHNV-DLILVMREGMIVQS 849
+GK +++V H + L + D+I V+ V
Sbjct: 277 EGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYG 309
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 1e-20
Identities = 55/219 (25%), Positives = 96/219 (43%), Gaps = 42/219 (19%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK-ISGKVKVCGTTAYVA----- 714
E LK I+L +KKG+ +I+G GSGKS+LL ILG + GKV + G V
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLL-YILGLLDAPTEGKVFLEGKE--VDYTNEK 74
Query: 715 QTSWIQNGTI---------------EENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGD 759
+ S ++N + EN++ +PM + + E L +
Sbjct: 75 ELSLLRNRKLGFVFQFHYLIPELTALENVI--VPMLKMGKPKKEAKERGEYLLSELG--- 129
Query: 760 QTEIGERGIN----LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDI---FKEC 812
+G++ LSGG++QR+ +ARA+ + + D+ +D+ + F +
Sbjct: 130 ---LGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI 186
Query: 813 VRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGR 851
G +I++VTH+ + L M++G +V
Sbjct: 187 NE---GGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 2e-17
Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 38/212 (17%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG---LHD 1340
+LKGI+LS+ GE + ++G +GSGKSTL+ + L P+ G++ ++G ++ L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 1341 LRSR--------FGIIPQE--------PVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLK 1384
LR+R +IP+ P+L G + + E L L
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKE-------AKERGEYLLSELGLG 131
Query: 1385 DVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 1444
D ++ KP +L SG G++Q + + R + LLF DE T ++DS +
Sbjct: 132 DKLSRKPYEL------SG-----GEQQRVAIARALANEPILLFADEPTGNLDSANTKRVM 180
Query: 1445 RIIREEFAA-CTIISIAHRIPTVMDCDRVIVV 1475
I + +I+ + H R + +
Sbjct: 181 DIFLKINEGGTSIVMVTHERELAELTHRTLEM 212
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 2e-20
Identities = 38/202 (18%), Positives = 74/202 (36%), Gaps = 33/202 (16%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
L GE IG++G G GK+T ++ + G + + +S
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYK------- 335
Query: 1344 RFGIIPQEP-VLFEGTVR----SNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLV 1398
PQ ++GTV+ + S + +R L ++ + + L
Sbjct: 336 -----PQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDL---- 386
Query: 1399 ADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE--EFAACTI 1456
SG G+ Q L + + K + L +D+ ++ +D + + + I+
Sbjct: 387 --SG-----GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT 439
Query: 1457 ISIAHRIPTVMD--CDRVIVVD 1476
I H + ++ D DR+IV
Sbjct: 440 FIIDHDL-SIHDYIADRIIVFK 460
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 3e-20
Identities = 56/298 (18%), Positives = 116/298 (38%), Gaps = 26/298 (8%)
Query: 624 LSRELVNESVERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVG 683
+ + + ++ V D + ++ + + G+ L N E K+G++ I+G G
Sbjct: 245 IRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNG 304
Query: 684 SGKSSLLASILGEMHKISGKVKVCGTT-AYVAQTSWI-QNGTIEENILFGLPMNRAKYGE 741
GK++ ++GE+ G V +Y Q + +GT+++ A
Sbjct: 305 IGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ--YLENASKDALSTS 362
Query: 742 VVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVD 801
+ K L + + + + LSGG+ Q++ +A + ++ D+Y+LD S +D
Sbjct: 363 SWFFEEVTKRLNLHRLLES-NVND----LSGGELQKLYIAATLAKEADLYVLDQPSSYLD 417
Query: 802 AHT---GSDIFKECVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNA--L 855
+ K R + ++ H + + D I+V +G ++G +
Sbjct: 418 VEERYIVAKAIKRVTRE--RKAVTFIIDHDLSIHDYIADRIIVF-KGEPEKAGLATSPVT 474
Query: 856 LNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENKSVEQS 913
L +GM +E EL + P+ K +Q+ G+ S+ S
Sbjct: 475 LKTGM--------NEFLRELEVTFRRDAETGRPRVNKIGSYLDRVQKERGDYYSMVLS 524
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 2e-17
Identities = 41/213 (19%), Positives = 77/213 (36%), Gaps = 28/213 (13%)
Query: 659 GEECLKNINLEI-KKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTS 717
K L K + ++G G GK+++L + GE+ G
Sbjct: 10 KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPN--SKVGKDEVLK 67
Query: 718 WIQNGTIEENILFGLPMNRA-----------KYGEVVRVCC---------LEKDLEMMEY 757
+ I F + + ++ K E+ E
Sbjct: 68 RFRGKEIYN--YFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKEL 125
Query: 758 GDQTEIGERGI-NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGA 816
+ T + + LSGG QR+ +A ++ ++ D+Y+ D S +D ++ + +R
Sbjct: 126 LNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNM-AKAIREL 184
Query: 817 LKGKTIILVTHQVDFLHNV-DLILVMREGMIVQ 848
LK K +I+V H + L + DLI ++ V
Sbjct: 185 LKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVY 217
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 6e-15
Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 35/219 (15%)
Query: 1276 RYRSNTPLVLKGITLSI-HGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDIS 1334
RY+ N K L +GV+G+ G GK+T++++ + P+ G +
Sbjct: 8 RYKVNG---FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD--PNSKVGK 62
Query: 1335 LLGLHDLR-SRFGIIPQEPVLFEGTVRSNIDPIGQYSDE--EIWKSLERCQLKDVVAAKP 1391
L R +E + I QY + + K L +
Sbjct: 63 DEVLKRFRGKEIYNYFKEL----YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERG- 117
Query: 1392 DKLDSLVAD--------------SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS 1437
K D + SG G Q L + +L+ + + D+ ++ +D
Sbjct: 118 -KKDEVKELLNMTNLWNKDANILSG-----GGLQRLLVAASLLREADVYIFDQPSSYLDV 171
Query: 1438 QTDAEIQRIIREEFAACTIISIAHRIPTVMD-CDRVIVV 1475
+ + + IRE +I + H + + D + ++
Sbjct: 172 RERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHII 210
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-20
Identities = 42/220 (19%), Positives = 82/220 (37%), Gaps = 29/220 (13%)
Query: 1273 LQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGID 1332
+Q++ + + L ++ + GE + +VG G+GKSTL+ + G I G
Sbjct: 5 MQLQDVAEST-RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQP 62
Query: 1333 ISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNIDPIGQY--SDEEI-WKSLERCQLKDVVA 1388
+ L + Q+ V + + Q+ + E+ L D
Sbjct: 63 LEAWSATKLALHRAYLSQQQTPPFATPVWHYLT-LHQHDKTRTELLNDVAGALALDD-KL 120
Query: 1389 AKPDKLDSLVADSGDNWSVGQRQLLCLGRVML-------KHSRLLFMDEATASVDSQTDA 1441
+ + L SG G+ Q + L V+L +LL +DE S+D +
Sbjct: 121 GRS--TNQL---SG-----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS 170
Query: 1442 EIQRIIREEFAA--CTIISIAHRIP-TVMDCDRVIVVDAG 1478
+ +I+ + I+ +H + T+ R ++ G
Sbjct: 171 ALDKILS-ALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGG 209
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 5e-17
Identities = 47/221 (21%), Positives = 87/221 (39%), Gaps = 52/221 (23%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT------------ 710
L ++ E++ G++ +VG G+GKS+LLA + G G ++ G
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLALH 74
Query: 711 -AYVAQTSWIQNG-TIEENILFG-LPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERG 767
AY++Q + + R E++ ++ + R
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRT---ELLN--------DVAGALALDDKLGRS 123
Query: 768 IN-LSGGQKQRIQLARAVYQDC-------DIYLLDDVFSAVDAHTGSDIFKECVRGALKG 819
N LSGG+ QR++LA V Q + LLD+ +++D S + K + +G
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQG 183
Query: 820 KTIILVTHQVDFLHNVDL---------ILVMREGMIVQSGR 851
I++ +H DL +++ G ++ SGR
Sbjct: 184 LAIVMSSH--------DLNHTLRHAHRAWLLKGGKMLASGR 216
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 6e-20
Identities = 60/214 (28%), Positives = 101/214 (47%), Gaps = 39/214 (18%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK-ISGKVKVCGTTAYVA-----QT 716
LKN+NL IK+G+ +I+G GSGKS++L +I+G + K G+V + +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTML-NIIGCLDKPTEGEVYIDNIK--TNDLDDDEL 77
Query: 717 SWIQNGTI---------------EENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQT 761
+ I+ I EN+ LP+ + + E+ +E
Sbjct: 78 TKIRRDKIGFVFQQFNLIPLLTALENVE--LPL---IFKYRGAMSGEERRKRALECLKMA 132
Query: 762 EIGERGIN-----LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDI---FKECV 813
E+ ER N LSGGQ+QR+ +ARA+ + I L D A+D+ TG I K+
Sbjct: 133 ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192
Query: 814 RGALKGKTIILVTHQVDFLHNVDLILVMREGMIV 847
GKT+++VTH ++ + I+ +++G +
Sbjct: 193 EE--DGKTVVVVTHDINVARFGERIIYLKDGEVE 224
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 4e-15
Identities = 56/211 (26%), Positives = 103/211 (48%), Gaps = 35/211 (16%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG---LHD 1340
LK + L+I GE + ++G +GSGKST++ + L +P+ G + ID I + L L
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 1341 LRSR-FGIIPQE----PVLFEGTVRSNI------DPIGQYSDEEI----WKSLERCQLKD 1385
+R G + Q+ P+L T N+ G S EE + L+ +L++
Sbjct: 80 IRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE 136
Query: 1386 VVAA-KPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQ 1444
A KP++L SG GQ+Q + + R + + ++ D+ T ++DS+T +I
Sbjct: 137 RFANHKPNQL------SG-----GQQQRVAIARALANNPPIILADQPTWALDSKTGEKIM 185
Query: 1445 RIIRE--EFAACTIISIAHRIPTVMDCDRVI 1473
+++++ E T++ + H I +R+I
Sbjct: 186 QLLKKLNEEDGKTVVVVTHDINVARFGERII 216
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-19
Identities = 63/209 (30%), Positives = 107/209 (51%), Gaps = 28/209 (13%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW---- 718
L +I+L + G++ I+G G GK++LL + G SG++ + G T + T+
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 719 ------IQNG------TIEENILFGLPMNRAKYGEVV-RVCCLEKDLEMMEYGDQTEIGE 765
+Q G T+ NI +GL + + + R+ M+E +E+
Sbjct: 80 RRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRI------EAMLELTGISELAG 133
Query: 766 RGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK--GKTI 822
R + LSGGQ+QR LARA+ D ++ LLD+ FSA+D I ++ + AL+ GK+
Sbjct: 134 RYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRED-MIAALRANGKSA 192
Query: 823 ILVTH-QVDFLHNVDLILVMREGMIVQSG 850
+ V+H + + L D I VM++G I+Q+
Sbjct: 193 VFVSHDREEALQYADRIAVMKQGRILQTA 221
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 6e-11
Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 44/233 (18%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+ + L +++ VL I+LS+ GE + ++G +G GK+TL++ +P G I
Sbjct: 5 LHIGHLSKSFQNTP--VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62
Query: 1328 IDGIDISLLGLH---DLRSRFGIIPQEPVLF-EGTVRSNID---PIGQYSDEEIWK---- 1376
+ G I + R R G + QE VLF TV NI G+ + +
Sbjct: 63 LSGKTIFSKNTNLPVRER-RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEA 121
Query: 1377 SLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVD 1436
LE + ++ P +L SG GQ+Q L R + L+ +DE +++D
Sbjct: 122 MLELTGISELAGRYPHEL------SG-----GQQQRAALARALAPDPELILLDEPFSALD 170
Query: 1437 ----SQTDAEIQRIIREEFAACTIISIAHRIPTVMD-------CDRVIVVDAG 1478
Q ++ +R + + ++H D DR+ V+ G
Sbjct: 171 EQLRRQIREDMIAALRA--NGKSAVFVSH------DREEALQYADRIAVMKQG 215
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 1e-18
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 18/209 (8%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW 718
G L+ EIKKG++ IVG G GK++ + + G GK++ T AY Q
Sbjct: 298 GSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIK 357
Query: 719 IQ-NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQR 777
GT+ E L ++ +K L K L +++ D+ E+ E LSGG+ QR
Sbjct: 358 ADYEGTVYE--LLS-KIDASKLNSNFYKTELLKPLGIIDLYDR-EVNE----LSGGELQR 409
Query: 778 IQLARAVYQDCDIYLLDDVFSAVDAH---TGSDIFKECVRGALKGKTIILVTHQVDFLHN 834
+ +A + +D DIYLLD+ + +D S + + KT ++V H V +
Sbjct: 410 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN--EKTALVVEHDVLMIDY 467
Query: 835 V-DLILVMREGMIVQSGRYNAL--LNSGM 860
V D ++V EG + GR + GM
Sbjct: 468 VSDRLMVF-EGEPGKYGRALPPMGMREGM 495
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 3e-18
Identities = 43/202 (21%), Positives = 85/202 (42%), Gaps = 35/202 (17%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
L+ I GE IG+VG G GK+T +++ + EP+ G+I D
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDL------------- 347
Query: 1344 RFGIIPQEPVL---FEGTVRSNI-DPIGQYSDEEIWKS--LERCQLKDVVAAKPDKLDSL 1397
+ + + +EGTV + + +K+ L+ + D+ + ++L
Sbjct: 348 --TVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNEL--- 402
Query: 1398 VADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE--EFAACT 1455
SG G+ Q + + +L+ + + +DE +A +D + + R IR E T
Sbjct: 403 ---SG-----GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 454
Query: 1456 IISIAHRIPTVMD-CDRVIVVD 1476
+ + H + + DR++V +
Sbjct: 455 ALVVEHDVLMIDYVSDRLMVFE 476
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 4e-17
Identities = 39/222 (17%), Positives = 86/222 (38%), Gaps = 34/222 (15%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS------GGR 1325
D RY N + + G +G+VG G+GKST +++ + P+
Sbjct: 26 DCVHRYGVNA--FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWD 83
Query: 1326 IIIDGIDISLLGLHDLRSR---FGIIPQE------PVLFEGTVRSNIDPIGQYSDEEIWK 1376
+I + L + + + + + P +G V + + E +
Sbjct: 84 GVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLE--E 141
Query: 1377 SLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVD 1436
++ +L++V+ + L SG G+ Q + + +L+++ F DE ++ +D
Sbjct: 142 VVKALELENVLEREIQHL------SG-----GELQRVAIAAALLRNATFYFFDEPSSYLD 190
Query: 1437 SQTDAEIQRIIREEFAA--CTIISIAHRIPTVMD-CDRVIVV 1475
+ R IR + +++ + H + + D + VV
Sbjct: 191 IRQRLNAARAIR-RLSEEGKSVLVVEHDLAVLDYLSDIIHVV 231
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 2e-13
Identities = 44/222 (19%), Positives = 82/222 (36%), Gaps = 56/222 (25%)
Query: 664 KNINLEIKKGDLTAIVGTVGSGKSSLLASILGEM------HKISGKVKVCGT-------- 709
+K+G + IVG G+GKS+ + + G++ S +
Sbjct: 38 LYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97
Query: 710 --------------TAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMM 755
YV G + E + K E ++ + K LE+
Sbjct: 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL--------KKADETGKLEEVVKALEL- 148
Query: 756 EYGDQTEIGERGI-NLSGGQKQRIQLARAVYQDCDIYLLD------DVFSAVDAHTGSDI 808
+ ER I +LSGG+ QR+ +A A+ ++ Y D D+ ++A +
Sbjct: 149 -----ENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNA---ARA 200
Query: 809 FKECVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQS 849
+ +GK++++V H + L + D+I V+ V
Sbjct: 201 IRRLSE---EGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYG 239
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 7e-18
Identities = 61/232 (26%), Positives = 103/232 (44%), Gaps = 38/232 (16%)
Query: 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKIS 701
++ +E + ++ ++ +I++G++ ++G GSGK+++L I G
Sbjct: 12 SMTIEFVGVEKIYPGGA--RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTK 69
Query: 702 GKVKVCG--TTAYVAQTSWI----QN------GTIEENILFGLPMNRAKYGEVV-RVCCL 748
G V + G T Q + QN T+ +N+ FGL R E+ RV
Sbjct: 70 GDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARV--- 126
Query: 749 EKDLEMMEYGDQTEIGERGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSD 807
+ L M R + LSGGQ+QR+ LARA+ + L D+ F+A+D
Sbjct: 127 RELLRFMRLES---YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDT----- 178
Query: 808 IFK--ECVRGALK------GKTIILVTH-QVDFLHNVDLILVMREGMIVQSG 850
+ +R ++ G T + VTH Q + L D +LV+ EG + Q G
Sbjct: 179 --QIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFG 228
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 3e-09
Identities = 46/190 (24%), Positives = 90/190 (47%), Gaps = 22/190 (11%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
++ + ++ Y ++G++ I GE +G++G +GSGK+T++++ L P+ G +
Sbjct: 15 IEFVGVEKIYPGGAR-SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNID---PIGQYSDEEIWK----SLE 1379
I G ++ L R G++ Q LF+ TV N+ + +E+ L
Sbjct: 74 IGGKRVTDLPPQK-R-NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLR 131
Query: 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
+L+ P +L SG GQ+Q + L R + ++L DE A++D+Q
Sbjct: 132 FMRLESYANRFPHEL------SG-----GQQQRVALARALAPRPQVLLFDEPFAAIDTQI 180
Query: 1440 DAEIQRIIRE 1449
E++ +R+
Sbjct: 181 RRELRTFVRQ 190
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 3e-16
Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 43/217 (19%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT--------- 709
L N++L+++ G+ I+G G+GK+ L I G SG++ + G
Sbjct: 12 KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK 71
Query: 710 --TAYVAQTSWIQN------GTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQT 761
A+V QN +++N+ FG+ M + K + V +
Sbjct: 72 HDIAFV-----YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVL--------DTARDLKIE 118
Query: 762 EIGERGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-- 818
+ +R LSGG++QR+ LARA+ + I LLD+ SA+D T +E R L
Sbjct: 119 HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRT-----QENAREMLSVL 173
Query: 819 ----GKTIILVTH-QVDFLHNVDLILVMREGMIVQSG 850
T++ +TH Q + D I V+ +G ++Q G
Sbjct: 174 HKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVG 210
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 36/200 (18%), Positives = 83/200 (41%), Gaps = 43/200 (21%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLV----EPSG 1323
+++ L ++++ L ++L + GE ++G TG+GK+ + L+ P
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFL----ELIAGFHVPDS 54
Query: 1324 GRIIIDGIDISLLGLHDLRSR-FGIIPQEPVLF-EGTVRSNI--------DPIGQYSDEE 1373
GRI++DG D++ L + Q LF V+ N+ +
Sbjct: 55 GRILLDGKDVTDLSPEK---HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD----PKR 107
Query: 1374 IWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATA 1433
+ + +++ ++ P L SG G++Q + L R ++ + ++L +DE +
Sbjct: 108 VLDTARDLKIEHLLDRNPLTL------SG-----GEQQRVALARALVTNPKILLLDEPLS 156
Query: 1434 SVD----SQTDAEIQRIIRE 1449
++D + + ++
Sbjct: 157 ALDPRTQENAREMLSVLHKK 176
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 58/207 (28%), Positives = 91/207 (43%), Gaps = 35/207 (16%)
Query: 665 NINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-----------TAYV 713
N++ E+ D ++G G+GKS L I G + G+V++ G +V
Sbjct: 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 714 AQT-SWIQNGTIEENILFGL-PMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGIN-L 770
Q + + ++ NI +GL + R + VR EM E + +R L
Sbjct: 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVR--------EMAEKLGIAHLLDRKPARL 127
Query: 771 SGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK------GKTIIL 824
SGG++QR+ LARA+ + LLD+ SAVD T K + L+ I+
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDLKT-----KGVLMEELRFVQREFDVPILH 182
Query: 825 VTH-QVDFLHNVDLILVMREGMIVQSG 850
VTH ++ D + VM G IV+ G
Sbjct: 183 VTHDLIEAAMLADEVAVMLNGRIVEKG 209
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 4e-10
Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 39/209 (18%)
Query: 1288 ITLSIH-GGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346
+ + G + ++G TG+GKS +++ +V+P G + ++G DI+ L R G
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER-RG-IG 73
Query: 1347 IIPQEPVLF-EGTVRSNID-PIGQYSDEEIWK----SLERCQLKDVVAAKPDKLDSLVAD 1400
+PQ+ LF +V NI + E + E+ + ++ KP +L
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARL------ 127
Query: 1401 SGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVD----SQTDAEIQRIIREEFAACTI 1456
SG G+RQ + L R ++ RLL +DE ++VD E++ + RE I
Sbjct: 128 SG-----GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQRE--FDVPI 180
Query: 1457 ISIAHRIPTVMD-------CDRVIVVDAG 1478
+ + H D D V V+ G
Sbjct: 181 LHVTH------DLIEAAMLADEVAVMLNG 203
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 3e-15
Identities = 58/212 (27%), Positives = 102/212 (48%), Gaps = 30/212 (14%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASI-LGEMHKISGKVKVCGTTAYVAQTSWI 719
E LK IN+ I++G++ ++G GSGKS+ L + L E G++ + G T+
Sbjct: 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD-EGEIIIDGINLKAKDTNLN 96
Query: 720 Q----------------NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEI 763
+ + T+ NI PM +V + + + + ME D+ +
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLA-PM------KVRKWPREKAEAKAMELLDKVGL 149
Query: 764 GERG----INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKG 819
++ +LSGGQ QR+ +ARA+ + I L D+ SA+D ++ + A +G
Sbjct: 150 KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 209
Query: 820 KTIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
T+++VTH++ F V D +L M G I++ G
Sbjct: 210 MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEG 241
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 57/171 (33%), Positives = 83/171 (48%), Gaps = 36/171 (21%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDIS--LLGLHDL 1341
VLKGI + I GE + V+G +GSGKST ++ L + G IIIDGI++ L+ +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 1342 RSRFGIIPQEPVLF-EGTVRSNID--PI--GQYSDEEIWKS----LERCQLKDVVAAKPD 1392
R G++ Q LF TV +NI P+ ++ E+ L++ LKD A PD
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 158
Query: 1393 KLDSLVADSGDNWSVGQRQ------LLCLG-RVMLKHSRLLFMDEATASVD 1436
L SG GQ Q L + ++M LF DE T+++D
Sbjct: 159 SL------SG-----GQAQRVAIARALAMEPKIM------LF-DEPTSALD 191
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 34/220 (15%)
Query: 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASI-LGEMHKISGKVKVCGTTAYVAQTSWI 719
E LK ++L+ + GD+ +I+G+ GSGKS+ L I E G + V G + +
Sbjct: 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS-EGAIIVNGQNINLVRDKDG 78
Query: 720 QNGTIEENILFGLPMNRAKYGEV--------------------VRVCCLEKD---LEMME 756
Q ++N L L R + V ++V L K ++
Sbjct: 79 QLKVADKNQLRLL---RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALK 135
Query: 757 YGDQTEIGERG-----INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKE 811
Y + I ER ++LSGGQ+QR+ +ARA+ + D+ L D+ SA+D ++ +
Sbjct: 136 YLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 195
Query: 812 CVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
+ A +GKT+++VTH++ F +V ++ + +G I + G
Sbjct: 196 MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+ +IDL RY + VLKG++L G+ I ++G +GSGKST ++ L +PS G II
Sbjct: 7 LHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 64
Query: 1328 IDGIDISLLGLHDLRSR 1344
++G +I+L+ D + +
Sbjct: 65 VNGQNINLVRDKDGQLK 81
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 5e-14
Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 35/213 (16%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWI--- 719
L N+N+ I+ G+ I+G G+GK++ + I G +G++ +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 720 --------QN------GTIEENILFGLPMNRAKYGEVV-RVCCLEKDLEMMEYGDQTEIG 764
Q T ENI F L + E+ RV + K L++ +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH---- 136
Query: 765 ERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK------ 818
LSG Q+QR+ LARA+ +D + LLD+ FS +DA ++ R +K
Sbjct: 137 -FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR-----MRDSARALVKEVQSRL 190
Query: 819 GKTIILVTH-QVDFLHNVDLILVMREGMIVQSG 850
G T+++V+H D D + V+ +G +VQ G
Sbjct: 191 GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVG 223
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 2e-09
Identities = 44/202 (21%), Positives = 85/202 (42%), Gaps = 34/202 (16%)
Query: 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRI 1326
+ + ++ ++ + L + ++I GE+ G++G +G+GK+T +++ L PS G +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1327 IIDGIDISLLGLHDLRSR-------FGIIPQEPVLF-EGTVRSNID---PIGQYSDEEIW 1375
D ++ G + F Q L+ T NI + S EEI
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVF----QTWALYPNLTAFENIAFPLTNMKMSKEEIR 118
Query: 1376 KSLERC----QLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEA 1431
K +E + V+ P +L SG Q+Q + L R ++K LL +DE
Sbjct: 119 KRVEEVAKILDIHHVLNHFPREL------SG-----AQQQRVALARALVKDPSLLLLDEP 167
Query: 1432 TASVDS----QTDAEIQRIIRE 1449
+++D+ A ++ +
Sbjct: 168 FSNLDARMRDSARALVKEVQSR 189
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 72.5 bits (179), Expect = 5e-14
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 21/211 (9%)
Query: 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSR 1344
L G+++S++ G+ ++G GSGKSTLI V ++ GR+ + DI+ +L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YH 81
Query: 1345 FGIIP--QEPVLFEG-TVRSNIDPIGQYSDEE--IWKSLERCQLKDVVAAKPD------- 1392
+GI+ Q P + TV N+ IG+ E + + +
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENL-LIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 1393 -KLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII---R 1448
KL L S GQ +L+ +GR ++ + +++ MDE A V +I + +
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 1449 EEFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
+ T + I HR+ V++ D + V+ G
Sbjct: 201 AK--GITFLIIEHRLDIVLNYIDHLYVMFNG 229
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 6e-07
Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 39/220 (17%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV-----KVCGTTAY----- 712
L +++ + KGD+T I+G GSGKS+L+ I G + G+V +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 713 -VAQTSWIQNG------TIEENILFG-------------LPMNRAKYGEVVRVCCLEKDL 752
+ +T Q T+ EN+L G K E+ +EK
Sbjct: 83 GIVRT--FQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-----VEKAF 135
Query: 753 EMMEY-GDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKE 811
+++E+ + LSGGQ + +++ RA+ + + ++D+ + V DIF
Sbjct: 136 KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 195
Query: 812 CVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
+ KG T +++ H++D + N D + VM G I+ G
Sbjct: 196 VLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.0 bits (186), Expect = 6e-14
Identities = 85/623 (13%), Positives = 180/623 (28%), Gaps = 167/623 (26%)
Query: 584 SVFTTTTIFKILQEP------------IRNFPQSMISLSQAMISLARLD-KYMLSR---E 627
S+ + I I+ + + + M+ + + + R++ K+++S E
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ--KFVEEVLRINYKFLMSPIKTE 101
Query: 628 LVNESVERV--EGCDDNIAVEVRDGVFSWDDENGEECLKNIN---LEIKKGDLTAIVGTV 682
S+ D + + + VF+ + + + + LE++ I G +
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQ--VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 683 GSGKSSLLASIL---GEMHKISGKVKVCGTTAYVAQTSWIQNG--TIEENILFGLPMNRA 737
GSGK+ + + K+ K+ W+ E +L + +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKI------------FWLNLKNCNSPETVL--EMLQK- 204
Query: 738 KYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYL-LDDV 796
+ D D + + I+ S + R L Y++C L L +V
Sbjct: 205 --------LLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYENC--LLVLLNV 253
Query: 797 FSA--VDAHTGSDIFK-ECVRGALKGKTIIL-----VTHQVDFLHNVDLILVMREGMIVQ 848
+A +A F C K ++ VT + + L +
Sbjct: 254 QNAKAWNA------FNLSC-------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 849 SGRYNALLNSGMDFGALVAAHETSMELVEVGKTMPSGNSPKTPKSPQITSNLQEANGENK 908
EV T P S I ++++
Sbjct: 301 D--------EVKSLLLKYLDCRPQDLPREVLTTNPRRLS-------IIAESIRDGLATWD 345
Query: 909 SVEQSNSDKGNSKLIK--------EEER----------ETGKVGLHVYKIYCTEAYGWWG 950
+ + N DK + +I+ E R + + + + W+
Sbjct: 346 NWKHVNCDK-LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI------WFD 398
Query: 951 VVAVLLLSVA---WQGSLMAGDYWLSYETSEDHSMSF--------NPSL---FIGVYGST 996
V+ ++ V + SL+ T S+ +L + Y
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQP--KESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 997 AVL---SMVILVVRAYFVTHVG--LKTAQ-----IFFSQIL-------RSILHAPMSFFD 1039
++ + YF +H+G LK + F + + I H D
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH------D 510
Query: 1040 TTPSGRILSRASTDQTNIDLFLPFFVGI--TVAMYITLLGIFIITCQ---YAWPTIFLV- 1093
+T S +T Q + + P+ + + F+ + L+
Sbjct: 511 STAWNASGSILNTLQ-QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
Query: 1094 IPLAWANYWYRGYYLSTSRELTR 1116
I L + +++ R
Sbjct: 570 IAL---MAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 3e-08
Identities = 48/318 (15%), Positives = 96/318 (30%), Gaps = 79/318 (24%)
Query: 1195 LPSSIIKPENVGLSLSYGLSLNGV--LFWAIYMSCFVENRMVSVERIKQFTEIPSE---- 1248
+P SI+ E + + +++G LFW + + MV ++F E
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTL---LSKQEEMV-----QKFVEEVLRINYK 92
Query: 1249 ---AAWKMEDRLPPPNW--------PAHGNVDLI-DLQVRYRSNTPLVLKGITLSIHGGE 1296
+ K E R P + + + V R L L+ L + +
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAK 151
Query: 1297 KIGVVGRTGSGKSTL-IQV--FFRLVEPSGGRII------IDGIDISLLGLHDLRSRFGI 1347
+ + G GSGK+ + + V +++ +I + + L L L +
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 1348 IPQEPVLFEGTVRSNIDPIG----------QY----------SDEEIWKSLE-RCQLKDV 1386
++ I I Y + + W + C++ +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI--L 269
Query: 1387 VAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQ-TDAEIQR 1445
+ + V D + + L H + + S+ + D Q
Sbjct: 270 LTTR----FKQVTDFLSAATT--------THISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 1446 IIREEFAACTI----ISI 1459
+ RE T +SI
Sbjct: 318 LPRE---VLTTNPRRLSI 332
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 2e-07
Identities = 99/627 (15%), Positives = 190/627 (30%), Gaps = 167/627 (26%)
Query: 17 VVQSSEDTSVSLILHWLRFIFLSPCPQRALLSFVDLLFLLALIVFAVQKLYSKFTASGLS 76
++ S + S +L L W LS + + FV+ ++ Y KF S +
Sbjct: 54 IIMSKDAVSGTLRLFW---TLLSK-QEEMVQKFVEE---------VLRINY-KFLMSPIK 99
Query: 77 SSDISKPLIRNNRASVRTTLW-----F---------KLSLIVTALLAL---CFTVICILT 119
+ ++ R L+ F + ALL L +I +
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 120 FSGSTQWPWKLVDAL-------------FWLVHAITHAVIAILIVHEKKFEAVTHPLSLR 166
SG T W +D FWL ++ +L + +K + + R
Sbjct: 160 GSGKT---WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 167 IYWVANFIIVSLFTTSGIIRLVSFETAQFCSLKLDDI--VSIV-SFP-----LLTVLLFI 218
+N + + + RL+ + + C L L ++ +F LLT
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT----- 271
Query: 219 AIRGSTGIAVNSDSEPGMDEKTKLYEPLLSKSDVVSGFASASILSKAFWIWMN-----PL 273
T +D + T + L S ++ S+L K ++
Sbjct: 272 -----TRFKQVTDF---LSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLPRE 321
Query: 274 LSKGYKSPLKIDEIPSLSPQHRAERMSELFESKWPKPHEKCKHPVRTTLLRCFWKEVAFT 333
+ +P ++ I AE + + WK V
Sbjct: 322 VLTT--NPRRLSII--------AESIRD--------------GLATWD----NWKHVNCD 353
Query: 334 AFLAIVRLCVMYVGPVLIQR-FVDFTSGKSSSFYEGYYL---VLILL----VAKFVEVFS 385
I+ + + P ++ F S F ++ +L L+ + V V
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRL-----SVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 386 THQFNF---NSQKLGMLIRCTLITSLYRKGLRLSCSARQA-HGVGQIVN-YMAVDAQQLS 440
+ Q I I S+Y + L++ A H IV+ Y
Sbjct: 409 NKLHKYSLVEKQPKESTIS---IPSIYLE-LKVKLENEYALH--RSIVDHYNIPKTFDSD 462
Query: 441 DMMLQL-----------HAVWLMPLQISVALILLYNCLGASVITTVVGIIGVMIFVVMGT 489
D++ H L ++ + L M+F+
Sbjct: 463 DLIPPYLDQYFYSHIGHH---LKNIEHPERMTLFR-----------------MVFL---- 498
Query: 490 KRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMY 549
+ RF +++ + A+ +LN ++ +KF ++ + + E + F+
Sbjct: 499 --DFRFLEQKIRHDSTAWNASGSILNTLQQLKF--YKPYICDNDPKY-ERLVNAILDFLP 553
Query: 550 SISGNIIVMWSTPVLISTLTFATALLF 576
I N+I T +L L +F
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 3e-06
Identities = 79/504 (15%), Positives = 147/504 (29%), Gaps = 156/504 (30%)
Query: 5 SG--WITSLSCSSSVVQSSEDTSVSLILHWLRFIFLSPCPQRALLSFVDLLFLLALIVFA 62
SG W+ C S VQ D + WL + S +L +L
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKI----FWLNL--------KNCNSPETVLEML------ 202
Query: 63 VQKLYSKFTASGLSSSDISKPLIRN-NRASVRTTLWFKLSLIVTALLAL----------C 111
QKL + + S SD S + + K LL L
Sbjct: 203 -QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 112 FTVIC---ILT--------FSGSTQWPWKLVDALFWLVHAITHAVIAILIVHEKKF---- 156
F + C + T S +T L L +++ + +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPR 320
Query: 157 EAV-THPLSLRIYWVANFIIVSLFTTSGIIRLVSFETAQFCSLKLDDIVSIVSFPLLTVL 215
E + T+P L I +A I G+ +++ KL I+ S L VL
Sbjct: 321 EVLTTNPRRLSI--IAESIR------DGLATWDNWKHVNC--DKLTTIIE-SS---LNVL 366
Query: 216 LFIAIRGSTGIAVNSDSEPGMDEKTKLYEPLLSKSDVVSGFASASILSKAFWI------- 268
EP E K+++ L S+ + I
Sbjct: 367 -----------------EP--AEYRKMFDRL-------------SVFPPSAHIPTILLSL 394
Query: 269 -WMNPLLSKGYKSPLKIDEI--PSLSPQHRAERMSEL----FESKWPKPHEKCKHPVRTT 321
W + + ++++ SL + E + E K +E H +
Sbjct: 395 IWFD---VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH---RS 448
Query: 322 LLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYE--GYYLVLILLVAK 379
++ + F + P + ++ FY G++L I +
Sbjct: 449 IVDHYNIPKTF---------DSDDLIPPYLDQY----------FYSHIGHHLKNIEHPER 489
Query: 380 FVEVFSTHQFNFN--SQKL---GMLIRCT-----LITSL--YRKGLRLSCSARQAHGVGQ 427
+F +F QK+ + + L Y+ + + + V
Sbjct: 490 M-TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL-VNA 547
Query: 428 IVNYMAVDAQQL-----SDMMLQL 446
I++++ + L +D +L++
Sbjct: 548 ILDFLPKIEENLICSKYTD-LLRI 570
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 70.9 bits (175), Expect = 1e-13
Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 28/171 (16%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
L V Y +KGI L + G+ + ++G G+GK+T + LV G+II +G
Sbjct: 11 SLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ 68
Query: 1332 DISLLGLHDLRSRFGII--PQEPVLFEG-TVRSNIDPIGQY---SDEEIWKSLERC---- 1381
DI+ H +R GI P+ +F TV N+ +G Y E I + LE
Sbjct: 69 DITNKPAHV-INRMGIALVPEGRRIFPELTVYENLM-MGAYNRKDKEGIKRDLEWIFSLF 126
Query: 1382 -QLKDVVAAKPDKLDSLVAD-SGDNWSVGQRQLLCLGRVMLKHSRLLFMDE 1430
+LK ++L L SG G++Q+L +GR ++ +LL MDE
Sbjct: 127 PRLK-------ERLKQLGGTLSG-----GEQQMLAIGRALMSRPKLLMMDE 165
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 58.6 bits (143), Expect = 2e-09
Identities = 55/238 (23%), Positives = 96/238 (40%), Gaps = 72/238 (30%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWI-QN 721
+K I+L++ +G + ++G G+GK++ L++I G + GK+ G I +
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 722 G--------------TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMM--------EYGD 759
G T+ EN++ G + K G +++DLE + E
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEG-------IKRDLEWIFSLFPRLKERLK 134
Query: 760 QTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLD------------DVFSAVDAHTGSD 807
Q G LSGG++Q + + RA+ + ++D +VF +
Sbjct: 135 Q-----LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI-----QK 184
Query: 808 IFKECVRGALKGKTIILVTHQVDFLHNVDLIL-------VMREGMIVQSGRYNALLNS 858
I +E G TI+LV Q N L V+ G IV G+ + LL++
Sbjct: 185 INQE-------GTTILLV-EQ-----NALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 5e-13
Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 22/183 (12%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQT- 716
+ L L +K+ I G G GKS+L+ +I + C T YV
Sbjct: 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEEC-RTVYVEHDI 504
Query: 717 -SWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGI-NLSGGQ 774
+ ++ + + + + ++E+G E+ I LSGG
Sbjct: 505 DGTHSDTSVLDFVFESGVGTKEAIKDK-----------LIEFGFTDEMIAMPISALSGGW 553
Query: 775 KQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKG--KTIILVTHQVDFL 832
K ++ LARAV ++ DI LLD+ + +D + L T I ++H FL
Sbjct: 554 KMKLALARAVLRNADILLLDEPTNHLDTVN-----VAWLVNYLNTCGITSITISHDSVFL 608
Query: 833 HNV 835
NV
Sbjct: 609 DNV 611
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 65.1 bits (158), Expect = 1e-10
Identities = 43/244 (17%), Positives = 83/244 (34%), Gaps = 29/244 (11%)
Query: 1220 FWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRS 1279
W +++ ++ + + E A + + G DL + +
Sbjct: 387 AWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGE-DLCNCEFSLAY 445
Query: 1280 NTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLH 1339
++L L + + G+ G G GKSTL++ G + +
Sbjct: 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--GQVDGFPTQEECRTVYV--- 500
Query: 1340 DLRSRFGIIPQEPVLFEG--TVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSL 1397
+ +V + G + E I L D + A P + +L
Sbjct: 501 ---------EHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMP--ISAL 549
Query: 1398 VADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTII 1457
SG G + L L R +L+++ +L +DE T +D+ A + + T I
Sbjct: 550 ---SG-----GWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSI 599
Query: 1458 SIAH 1461
+I+H
Sbjct: 600 TISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 2e-06
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 24/104 (23%)
Query: 756 EYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLD------DVFSAVDAHTGSDIF 809
E + I LSGGQK ++ LA +Q + +LD D ++ A
Sbjct: 892 EIVSHSRIR----GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDR-DSLGA------- 939
Query: 810 KECVRGALK--GKTIILVTHQVDFLHNV-DLILVMREGMIVQSG 850
+ ALK +I++TH +F N+ + + +++G + SG
Sbjct: 940 ---LSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 1e-05
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIII 1328
+++ +Y + + I +I V+G G+GKSTLI V + P+ G +
Sbjct: 676 NMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT 732
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 1e-04
Identities = 32/187 (17%), Positives = 61/187 (32%), Gaps = 8/187 (4%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT--TAYVAQTSWIQ 720
+ +IN + A++G G+GKS+L+ + GE+ SG+V AY+ Q ++
Sbjct: 689 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAH 748
Query: 721 NGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQL 780
+ + R + GE D + + I G +RI
Sbjct: 749 IESHLDKTPSEYIQWRFQTGEDRETM----DRANRQINENDAEAMNKIFKIEGTPRRIAG 804
Query: 781 ARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTII--LVTHQVDFLHNVDLI 838
+ + + Y + F + + LV + VD+
Sbjct: 805 IHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMK 864
Query: 839 LVMREGM 845
+ G
Sbjct: 865 EALASGQ 871
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 4e-11
Identities = 70/216 (32%), Positives = 106/216 (49%), Gaps = 46/216 (21%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKIS-GKVKVCGTT----------- 710
L NINL+IK G+ A++G GSGKS+LL +I G ++K + GK+
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG-IYKPTSGKIYFDEKDVTELPPKDRNV 77
Query: 711 AYVAQTSWIQN------GTIEENILFGLPMNRAKYGEV-VRVCCLEKDLEMMEYGDQTEI 763
V QN T+ +NI F L + +A E+ +V + K L + + ++
Sbjct: 78 GLV-----FQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNR--- 129
Query: 764 GERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECV--RGALK--- 818
LSGGQ+QR+ +ARA+ ++ ++ LLD+ S +DA + R LK
Sbjct: 130 --YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA-------LLRLEVRAELKRLQ 180
Query: 819 ---GKTIILVTH-QVDFLHNVDLILVMREGMIVQSG 850
G T + VTH Q + L D I V+REG I+Q G
Sbjct: 181 KELGITTVYVTHDQAEALAMADRIAVIREGEILQVG 216
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 49/207 (23%), Positives = 93/207 (44%), Gaps = 51/207 (24%)
Query: 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRI 1326
+ L ++ ++ + T L I L I GE + ++G +GSGKSTL+ + +P+ G+I
Sbjct: 3 EIKLENIVKKFGNFT--ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
Query: 1327 IIDGIDISLLGLHDLRSRFGIIPQE-------------PVLFEGTVRSNID---PIGQYS 1370
D D++ +L P++ P + TV NI + +
Sbjct: 61 YFDEKDVT-----ELP------PKDRNVGLVFQNWALYPHM---TVYKNIAFPLELRKAP 106
Query: 1371 DEEIWKSLERC----QLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLL 1426
EEI K + + ++ P +L SG GQ+Q + + R ++K +L
Sbjct: 107 REEIDKKVREVAKMLHIDKLLNRYPWQL------SG-----GQQQRVAIARALVKEPEVL 155
Query: 1427 FMDEATASVDS----QTDAEIQRIIRE 1449
+DE +++D+ + AE++R+ +E
Sbjct: 156 LLDEPLSNLDALLRLEVRAELKRLQKE 182
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 9e-11
Identities = 58/221 (26%), Positives = 94/221 (42%), Gaps = 46/221 (20%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKIS-GKVKVCGTT------ 710
+ + ++ E+K G+ A++G G GK++ L + G ++K + G++
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG-IYKPTSGEIYFDDVLVNDIPP 72
Query: 711 -----AYVAQTSWIQN------GTIEENILFGLPMNRAKYGEV-VRVCCLEKDLEMMEYG 758
V QN T+ ENI F L R EV RV + + L +
Sbjct: 73 KYREVGMV-----FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLL 127
Query: 759 DQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECV--RGA 816
D+ + LSGGQ+QR+ LARA+ + + L D+ S +DA + R
Sbjct: 128 DR-----KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA-------NLRMIMRAE 175
Query: 817 LK------GKTIILVTH-QVDFLHNVDLILVMREGMIVQSG 850
+K G T + VTH Q + + I V +G +VQ G
Sbjct: 176 IKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYG 216
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 42/209 (20%), Positives = 89/209 (42%), Gaps = 61/209 (29%)
Query: 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLV----EPS 1322
++ +++L+ + + G++ + GE + ++G +G GK+T + ++ +P+
Sbjct: 3 SIRVVNLKKYF--GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTL----LMLAGIYKPT 56
Query: 1323 GGRIIIDGIDISLLGLHDLRSRFGIIPQEP-------VLFEG-------TVRSNID---P 1365
G I D + ++ D+ P V F+ TV NI
Sbjct: 57 SGEIYFDDVLVN-----DI---------PPKYREVGMV-FQNYALYPHMTVFENIAFPLR 101
Query: 1366 IGQYSDEEIWKSLERC----QLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLK 1421
+ S +E+ K + + +++ KP +L SG GQ+Q + L R ++K
Sbjct: 102 ARRISKDEVEKRVVEIARKLLIDNLLDRKPTQL------SG-----GQQQRVALARALVK 150
Query: 1422 HSRLLFMDEATASVDS----QTDAEIQRI 1446
++L DE +++D+ AEI+ +
Sbjct: 151 QPKVLLFDEPLSNLDANLRMIMRAEIKHL 179
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 1e-09
Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 46/216 (21%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKIS-GKVKVCGTT----------- 710
+ +NL IK G+ ++G G GK++ L I G + + + G++
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGDRDVTYLPPKDRNI 85
Query: 711 AYVAQTSWIQN------GTIEENILFGLPMNRAKYGEV-VRVCCLEKDLEMMEYGDQTEI 763
+ V Q+ T+ ENI F L + + E+ RV + L++ E ++
Sbjct: 86 SMV-----FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNR--- 137
Query: 764 GERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECV--RGALK--- 818
LSGGQ+QR+ +ARA+ + D+ L+D+ S +DA K V R +K
Sbjct: 138 --YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA-------KLRVAMRAEIKKLQ 188
Query: 819 ---GKTIILVTH-QVDFLHNVDLILVMREGMIVQSG 850
T I VTH QV+ + D I VM G ++Q G
Sbjct: 189 QKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIG 224
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 8e-05
Identities = 51/205 (24%), Positives = 91/205 (44%), Gaps = 53/205 (25%)
Query: 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRI 1326
V L +L R+ + T + + L+I GE + ++G +G GK+T +++ L EP+ GRI
Sbjct: 11 EVKLENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
Query: 1327 IIDGIDISLLGLHDLRSRFGIIPQEP-------VLFEG-------TVRSNID---PIGQY 1369
D++ L P V F+ TV NI I ++
Sbjct: 69 YFGDRDVT-----YL---------PPKDRNISMV-FQSYAVWPHMTVYENIAFPLKIKKF 113
Query: 1370 SDEEIWKSLERC----QLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRL 1425
+EI K + Q+++++ P +L SG GQRQ + + R ++ +
Sbjct: 114 PKDEIDKRVRWAAELLQIEELLNRYPAQL------SG-----GQRQRVAVARAIVVEPDV 162
Query: 1426 LFMDEATASVDS----QTDAEIQRI 1446
L MDE +++D+ AEI+++
Sbjct: 163 LLMDEPLSNLDAKLRVAMRAEIKKL 187
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 8e-09
Identities = 59/217 (27%), Positives = 100/217 (46%), Gaps = 42/217 (19%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKIS-GKVKVCGTTAYVAQTSWI-- 719
++ ++LE+K G+ ++G G GK++ L I G + + S G++ + +
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPSRGQIYIGDKLVADPEKGIFVP 77
Query: 720 ----------QN------GTIEENILFGLPMNRAKYGEV-VRVCCLEKDLEMMEYGDQTE 762
Q+ T+ +NI F L + + E+ RV + + L + E ++
Sbjct: 78 PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR-- 135
Query: 763 IGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECV--RGALK-- 818
+ LSGGQ+QR+ L RA+ + ++L+D+ S +DA K V R LK
Sbjct: 136 ---KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA-------KLRVRMRAELKKL 185
Query: 819 ----GKTIILVTH-QVDFLHNVDLILVMREGMIVQSG 850
G T I VTH QV+ + D I VM G++ Q G
Sbjct: 186 QRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-06
Identities = 47/204 (23%), Positives = 94/204 (46%), Gaps = 45/204 (22%)
Query: 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRI 1326
V L+D+ + T ++ ++L + GE + ++G +G GK+T +++ L EPS G+I
Sbjct: 3 GVRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1327 IIDGIDISLLGLHDLRSRFGIIPQE-------------PVLFEGTVRSNID---PIGQYS 1370
I ++ D + P++ P + TV NI + +
Sbjct: 61 YIGDKLVA-----DPEKGIFVPPKDRDIAMVFQSYALYPHM---TVYDNIAFPLKLRKVP 112
Query: 1371 DEEIWKSLERC----QLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLL 1426
+EI + + L +++ KP +L SG GQRQ + LGR +++ ++
Sbjct: 113 RQEIDQRVREVAELLGLTELLNRKPREL------SG-----GQRQRVALGRAIVRKPQVF 161
Query: 1427 FMDEATASVDS----QTDAEIQRI 1446
MDE +++D+ + AE++++
Sbjct: 162 LMDEPLSNLDAKLRVRMRAELKKL 185
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 8e-07
Identities = 63/220 (28%), Positives = 99/220 (45%), Gaps = 54/220 (24%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASI--L-----GEMHKISGKVKVCGTT----- 710
K+INL+I +G+ VG G GKS+LL I L G++ I K + T
Sbjct: 19 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF-IGEKR-MNDTPPAERG 76
Query: 711 -AYVAQTSWIQN------GTIEENILFGLPMNRAKYGEV-VRVCCLEKDLEMMEYGD--- 759
V Q+ ++ EN+ FGL + AK + RV + + L++ D
Sbjct: 77 VGMV-----FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP 131
Query: 760 -QTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDA----HTGSDIFKECVR 814
LSGGQ+QR+ + R + + ++LLD+ S +DA +I +
Sbjct: 132 KA---------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR---- 178
Query: 815 GALK---GKTIILVTH-QVDFLHNVDLILVMREGMIVQSG 850
L G+T+I VTH QV+ + D I+V+ G + Q G
Sbjct: 179 --LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 3e-04
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLV----EPS 1322
+V L ++ + V K I L IH GE + VG +G GKSTL+ R++ +
Sbjct: 3 SVQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLL----RMIAGLETIT 56
Query: 1323 GGRIIIDG 1330
G + I
Sbjct: 57 SGDLFIGE 64
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 57/251 (22%), Positives = 104/251 (41%), Gaps = 92/251 (36%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILG-EMHKI-SGKVKVCGTTAYVAQ 715
+ L+ ++L++ G++ AI+G GSGKS+L A++ G E +++ G V+ G
Sbjct: 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG------- 83
Query: 716 TSWIQNGTIEENILFGLPMNRAKYG---------EV---------------VRVCCLEKD 751
+++L P +RA G E+ VR ++
Sbjct: 84 ----------KDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQET 133
Query: 752 LEMMEYGDQ-----------TEIGERGIN--LSGGQKQR---IQLARAVYQDCDIYLLDD 795
L+ ++ D ++ R +N SGG+K+R +Q+A +L+
Sbjct: 134 LDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA----------VLEP 183
Query: 796 VFSAVDAHTGS--DI--FKECVRG--ALKGK--TIILVTH--------QVDFLHNVDLIL 839
+D + S DI K G +L+ + I+VTH + D++H
Sbjct: 184 ELCILD-ESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVH------ 236
Query: 840 VMREGMIVQSG 850
V+ +G IV+SG
Sbjct: 237 VLYQGRIVKSG 247
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLV-----EPSGGRIIIDGIDISLLGL 1338
+L+G++L +H GE ++G GSGKSTL L E +GG + G D+ L
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSAT---LAGREDYEVTGGTVEFKGKDLLALSP 91
Query: 1339 HDLRSRFGI 1347
D R+ GI
Sbjct: 92 ED-RAGEGI 99
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 8/105 (7%)
Query: 748 LEKDLEMMEYGDQTEIGERGIN-LSGGQKQRIQLA------RAVYQDCDIYLLDDVFSAV 800
+ + + E ER + LSGG++ + LA + + + +LD+ +
Sbjct: 226 VRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYL 285
Query: 801 DAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVD-LILVMREG 844
D + R K +ILV+H + D +I + E
Sbjct: 286 DEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLEN 330
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 60/247 (24%), Positives = 100/247 (40%), Gaps = 88/247 (35%)
Query: 658 NGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILG-EMHKI-SGKVKVCGTTAYVAQ 715
+GE LK +NL + KG++ A++G G+GKS+L + G + + G++ + G
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDG------- 66
Query: 716 TSWIQNGTIEENILFGLPMNRAKYG---------EVVRVCCL-----------EKDLEMM 755
ENIL P RA+ G EV V +++ +
Sbjct: 67 ----------ENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVA 116
Query: 756 EYGDQ-----------TEIGERGIN--LSGGQKQR---IQLARAVYQDCDIYLLDDVFSA 799
E+ + R +N SGG+K+R +QL +L+ ++
Sbjct: 117 EFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLL----------VLEPTYAV 166
Query: 800 VDAHTGS--DI--FKECVRG--ALKGKT--IILVTH--------QVDFLHNVDLILVMRE 843
+D T S DI K RG A++G +++TH Q D +H VM +
Sbjct: 167 LD-ETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVH------VMMD 219
Query: 844 GMIVQSG 850
G +V +G
Sbjct: 220 GRVVATG 226
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 5e-05
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLV-----EPSGGRIIIDGIDISLLGL 1338
+LKG+ L + GE ++G G+GKSTL ++ L G I++DG +I L
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKI---LAGDPEYTVERGEILLDGENILELSP 74
Query: 1339 HDLRSRFGI 1347
+ R+R G+
Sbjct: 75 DE-RARKGL 82
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1479 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-67 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 5e-59 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-63 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-57 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-63 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-52 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-59 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 9e-54 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-59 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 5e-50 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-56 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 8e-52 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 8e-36 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-32 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-34 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-29 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-33 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-31 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-33 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-29 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-30 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-27 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-29 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 5e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-29 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-28 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-28 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-26 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-28 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-28 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 6e-27 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-26 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-26 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 8e-26 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-25 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-24 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-23 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-21 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-21 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-14 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-13 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 8e-13 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 1e-09 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 3e-08 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 4e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.002 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-05 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 225 bits (576), Expect = 2e-67
Identities = 70/221 (31%), Positives = 121/221 (54%), Gaps = 1/221 (0%)
Query: 1259 PPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL 1318
P G +D+ + +Y N +LK I LSI GE + VG +G GKSTLI + R
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 67
Query: 1319 VEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNI-DPIGQYSDEEIWKS 1377
+ + G+I+IDG +I LR++ G++ Q+ +LF TV+ NI +DEE+ ++
Sbjct: 68 YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEA 127
Query: 1378 LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS 1437
+ D + P D+ V + G S GQ+Q L + R+ L + +L +DEAT+++D
Sbjct: 128 AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 187
Query: 1438 QTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
++++ IQ + T + +AHR+ T+ D+++V++ G
Sbjct: 188 ESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENG 228
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 201 bits (514), Expect = 5e-59
Identities = 72/238 (30%), Positives = 121/238 (50%), Gaps = 16/238 (6%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
+++ F ++D N LK+INL I+KG+ A VG G GKS+L+ I SG++
Sbjct: 17 IDIDHVSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 75
Query: 705 KVCGT-------------TAYVAQTSWIQNGTIEENILFGLPM-NRAKYGEVVRVCCLEK 750
+ G V Q + + + T++ENIL G P + E ++
Sbjct: 76 LIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHD 135
Query: 751 DLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFK 810
+ + G TE+GERG+ LSGGQKQR+ +AR + I +LD+ SA+D + S I +
Sbjct: 136 FIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII-Q 194
Query: 811 ECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAA 868
E + K +T ++V H++ + + D I+V+ G IV++G + L+ + L +
Sbjct: 195 EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSI 252
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 214 bits (547), Expect = 1e-63
Identities = 68/218 (31%), Positives = 120/218 (55%), Gaps = 2/218 (0%)
Query: 1263 PAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPS 1322
A G+++ ++ Y L+ I L I G+ + +VGR+GSGKST+ + R +
Sbjct: 9 RATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID 68
Query: 1323 GGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNI--DPIGQYSDEEIWKSLER 1380
G I++DG D+ L LR++ ++ Q LF TV +NI +YS E+I ++
Sbjct: 69 EGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARM 128
Query: 1381 CQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTD 1440
D + + LD+++ ++G S GQRQ + + R +L+ S +L +DEAT+++D++++
Sbjct: 129 AYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 188
Query: 1441 AEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
IQ + E T + IAHR+ T+ D ++VV+ G
Sbjct: 189 RAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 197 bits (502), Expect = 1e-57
Identities = 72/251 (28%), Positives = 120/251 (47%), Gaps = 22/251 (8%)
Query: 633 VERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLAS 692
++R G +E R+ F++ L+NINL+I G A+VG GSGKS++ +
Sbjct: 7 IDRATG-----DLEFRNVTFTYPG-REVPALRNINLKIPAGKTVALVGRSGSGKSTIASL 60
Query: 693 ILGEMHKISGKVKVCGTT-------------AYVAQTSWIQNGTIEENILFGLP--MNRA 737
I G + + G A V+Q + N T+ NI + +R
Sbjct: 61 ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE 120
Query: 738 KYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVF 797
+ E R+ + M+ G T IGE G+ LSGGQ+QRI +ARA+ +D I +LD+
Sbjct: 121 QIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 180
Query: 798 SAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLN 857
SA+D + I + K +T +++ H++ + D I+V+ +G+IV+ G ++ LL
Sbjct: 181 SALDTESERAIQ-AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 239
Query: 858 SGMDFGALVAA 868
+ L
Sbjct: 240 QHGVYAQLHKM 250
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 214 bits (546), Expect = 5e-63
Identities = 99/266 (37%), Positives = 150/266 (56%), Gaps = 4/266 (1%)
Query: 614 ISLARLDKYMLSRELVNESVERVEGCDDNIAVEVRDG--VFSWDDENGEECLKNINLEIK 671
I + + + E E +E+V+ + + + FS G LKNINL I+
Sbjct: 3 IIMENVTAF--WEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIE 60
Query: 672 KGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILFG 731
KG++ AI G+ GSGK+SLL ILGE+ G +K G ++ +Q SWI GTI+ENI+FG
Sbjct: 61 KGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFG 120
Query: 732 LPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIY 791
+ + +Y VV+ C L++D+ D T +GE G+ LSGGQ+ RI LARAVY+D D+Y
Sbjct: 121 VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLY 180
Query: 792 LLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGR 851
LLD F +D T +F+ CV + KT ILVT +++ L D IL++ +G G
Sbjct: 181 LLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGT 240
Query: 852 YNALLNSGMDFGALVAAHETSMELVE 877
++ L + DF + + ++T + E
Sbjct: 241 FSELQSLRPDFSSKLMGYDTFDQFTE 266
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 183 bits (466), Expect = 3e-52
Identities = 55/248 (22%), Positives = 105/248 (42%), Gaps = 20/248 (8%)
Query: 1234 VSVERIKQFT-EIPSEAAWKMEDRLPP-PNWPAHGNVDLIDLQVRYRSNTPLVLKGITLS 1291
+ +E + F E E K++ + NV L + VLK I L+
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLN 58
Query: 1292 IHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQE 1351
I GE + + G TGSGK++L+ + +E S G I G R Q
Sbjct: 59 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQF 105
Query: 1352 PVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411
+ GT++ NI Y + ++ CQL+ + ++ ++++ + G S GQR
Sbjct: 106 SWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 165
Query: 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEI-QRIIREEFAACTIISIAHRIPTVMDCD 1470
+ L R + K + L +D +D T+ ++ + + + A T I + ++ + D
Sbjct: 166 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKAD 225
Query: 1471 RVIVVDAG 1478
+++++ G
Sbjct: 226 KILILHQG 233
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 202 bits (515), Expect = 3e-59
Identities = 59/227 (25%), Positives = 117/227 (51%), Gaps = 7/227 (3%)
Query: 1257 LPPPNWPAHGNVDLIDLQVRYRSNT-PLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVF 1315
L P G V D+ Y + LVL+G+T ++ GE +VG GSGKST+ +
Sbjct: 3 LTP--LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 1316 FRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNI--DPIGQYSDEE 1373
L +P+GG++++DG + L + + QEP +F +++ NI + + EE
Sbjct: 61 QNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEE 120
Query: 1374 IWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATA 1433
I + + ++ P D+ V ++G S GQRQ + L R +++ +L +D+AT+
Sbjct: 121 ITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATS 180
Query: 1434 SVDSQTDAEIQRIIRE--EFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
++D+ + ++++++ E E + +++ I + V D ++ ++ G
Sbjct: 181 ALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGG 227
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 186 bits (474), Expect = 9e-54
Identities = 61/251 (24%), Positives = 113/251 (45%), Gaps = 21/251 (8%)
Query: 634 ERVEGCDDNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASI 693
+EG V+ +D F++ + L+ + ++ G++TA+VG GSGKS++ A +
Sbjct: 6 LHLEG-----LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 694 LGEMHKISGKVKVCGTT-------------AYVAQTSWIQNGTIEENILFGLPMNRAKYG 740
G++ + G A V Q + +++ENI +GL
Sbjct: 61 QNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEE 120
Query: 741 --EVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFS 798
+ + G TE+ E G LSGGQ+Q + LARA+ + + +LDD S
Sbjct: 121 ITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATS 180
Query: 799 AVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLN 857
A+DA++ + + + ++++L+T + + D IL + G I + G + L+
Sbjct: 181 ALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME 240
Query: 858 SGMDFGALVAA 868
+ A+V A
Sbjct: 241 KKGCYWAMVQA 251
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 201 bits (512), Expect = 4e-59
Identities = 70/213 (32%), Positives = 128/213 (60%), Gaps = 1/213 (0%)
Query: 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRI 1326
++ +++ RY+ ++P++L I LSI GE IG+VGR+GSGKSTL ++ R P G++
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 1327 IIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNI-DPIGQYSDEEIWKSLERCQLKD 1385
+IDG D++L + LR + G++ Q+ VL ++ NI S E++ + + D
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 1386 VVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQR 1445
++ + +++V + G S GQRQ + + R ++ + ++L DEAT+++D +++ I R
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 1446 IIREEFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
+ + T+I IAHR+ TV + DR+IV++ G
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKG 213
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 175 bits (445), Expect = 5e-50
Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 16/227 (7%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
+ R+ F + + L NINL IK+G++ IVG GSGKS+L I +G+V
Sbjct: 2 ITFRNIRFRYK-PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 705 KVCGT-------------TAYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEK 750
+ G V Q + + N +I +NI P M+ K ++
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 751 DLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFK 810
+ + G T +GE+G LSGGQ+QRI +ARA+ + I + D+ SA+D + I +
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 811 ECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLN 857
+ KG+T+I++ H++ + N D I+VM +G IV+ G++ LL+
Sbjct: 181 N-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 193 bits (492), Expect = 3e-56
Identities = 66/209 (31%), Positives = 116/209 (55%), Gaps = 3/209 (1%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
+ Y + +L+ I+ I G +G GKST+ + R +P+ G I IDG
Sbjct: 6 HVDFAYDDSEQ-ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ 64
Query: 1332 DISLLGLHDLRSRFGIIPQEPVLFEGTVRSNID--PIGQYSDEEIWKSLERCQLKDVVAA 1389
I + L + RS+ G + Q+ + GT+R N+ G Y+DE++W+ L+ + V
Sbjct: 65 PIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVEN 124
Query: 1390 KPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE 1449
PD+L++ V + G S GQRQ L + R L++ ++L +DEATAS+DS++++ +Q+ +
Sbjct: 125 MPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS 184
Query: 1450 EFAACTIISIAHRIPTVMDCDRVIVVDAG 1478
T + IAHR+ T++D D++ ++ G
Sbjct: 185 LMKGRTTLVIAHRLSTIVDADKIYFIEKG 213
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 180 bits (458), Expect = 8e-52
Identities = 64/238 (26%), Positives = 124/238 (52%), Gaps = 18/238 (7%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
+ R F++DD E+ L++I+ E + + A G G GKS++ + + +G++
Sbjct: 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 705 KVCGTT-------------AYVAQTSWIQNGTIEENILFGLPMNRAKYG--EVVRVCCLE 749
+ G +V+Q S I GTI EN+ +GL + +V+ +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 750 KDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIF 809
+E M TE+GERG+ +SGGQ+QR+ +ARA ++ I +LD+ +++D+ + S +
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 810 KECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVA 867
K + +KG+T +++ H++ + + D I + +G I SG++N L+ + + V+
Sbjct: 180 K-ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 134 bits (338), Expect = 8e-36
Identities = 48/220 (21%), Positives = 100/220 (45%), Gaps = 9/220 (4%)
Query: 1268 VDLIDLQVRYRSNTPL--VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGR 1325
+ L ++ Y+ + LK + L+I GE + ++G +GSGKST++ + L +P+ G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1326 IIIDGIDISLLGLHDL----RSRFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLER 1380
+ ID I + L +L R + G + Q+ L T N++ + ER
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1381 CQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTD 1440
+ + + + S GQ+Q + + R + + ++ D+ T ++DS+T
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 1441 AEIQRIIREEFAA--CTIISIAHRIPTVMDCDRVIVVDAG 1478
+I +++++ T++ + H I +R+I + G
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 123 bits (310), Expect = 4e-32
Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 30/232 (12%)
Query: 645 VEVRDGVFSWDDENGE-ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGK 703
+++++ ++ LKN+NL IK+G+ +I+G GSGKS++L I G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 704 VKVCGTT-----------------AYVAQ-TSWIQNGTIEENILFGLPMNRAKYGEVVRV 745
V + +V Q + I T EN+ L +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRG-----AM 116
Query: 746 CCLEKDLEMMEYGDQTEIGERGIN-----LSGGQKQRIQLARAVYQDCDIYLLDDVFSAV 800
E+ +E E+ ER N LSGGQ+QR+ +ARA+ + I L D A+
Sbjct: 117 SGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGAL 176
Query: 801 DAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHNVDLILVMREGMIVQSGR 851
D+ TG I + + + GKT+++VTH ++ + I+ +++G + + +
Sbjct: 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 130 bits (329), Expect = 2e-34
Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 27/227 (11%)
Query: 1268 VDLIDLQVRYRSNTPLV--LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGR 1325
+ L ++ + T + L ++L + G+ GV+G +G+GKSTLI+ L P+ G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1326 IIIDGIDISLLGLHD---LRSRFGIIPQEPVLF-EGTVRSNIDPIGQYS-------DEEI 1374
+++DG +++ L + R + G+I Q L TV N+ + +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1375 WKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATAS 1434
+ L L D + P L S GQ+Q + + R + + ++L DEAT++
Sbjct: 122 TELLSLVGLGDKHDSYPSNL-----------SGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 1435 VDSQTDAEIQRIIRE--EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
+D T I ++++ TI+ I H + V CD V V+ G
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNG 217
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 114 bits (287), Expect = 6e-29
Identities = 53/234 (22%), Positives = 105/234 (44%), Gaps = 24/234 (10%)
Query: 645 VEVRDGVFSWDDENGE-ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGK 703
+++ + + + L N++L + G + ++G G+GKS+L+ + G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 704 VKVCGT----------------TAYVAQT-SWIQNGTIEENILFGLPMNRAKYGEVVRVC 746
V V G + Q + + + T+ N+ L ++ EV R
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR- 120
Query: 747 CLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS 806
+ + L ++ GD+ + NLSGGQKQR+ +ARA+ + + L D+ SA+D T
Sbjct: 121 -VTELLSLVGLGDKHD--SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177
Query: 807 DIFKECVR-GALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLNS 858
I + G TI+L+TH++D + + D + V+ G +++ + + +
Sbjct: 178 SILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 127 bits (320), Expect = 2e-33
Identities = 52/222 (23%), Positives = 102/222 (45%), Gaps = 26/222 (11%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
V L +L R+ + T + + L+I GE + ++G +G GK+T +++ L EP+ GRI
Sbjct: 7 VKLENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNIDPIGQYS-------DEEIWKSLE 1379
D++ L ++ Q ++ TV NI + D+ + + E
Sbjct: 65 FGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE 122
Query: 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
Q+++++ P +L S GQRQ + + R ++ +L MDE +++D++
Sbjct: 123 LLQIEELLNRYPAQL-----------SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL 171
Query: 1440 DAEIQRIIRE--EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
++ I++ + T I + H M DR+ V++ G
Sbjct: 172 RVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRG 213
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 120 bits (303), Expect = 5e-31
Identities = 57/230 (24%), Positives = 99/230 (43%), Gaps = 23/230 (10%)
Query: 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISG 702
+ V++ + + + + +NL IK G+ ++G G GK++ L I G G
Sbjct: 5 VEVKLENLTKRFGNF---TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 61
Query: 703 KVKVCGTT-----------AYVAQTSWIQNG-TIEENILFGLPMNRAKYGEVV-RVCCLE 749
++ + V Q+ + T+ ENI F L + + E+ RV
Sbjct: 62 RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 750 KDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIF 809
+ L++ E ++ LSGGQ+QR+ +ARA+ + D+ L+D+ S +DA +
Sbjct: 122 ELLQIEELLNR-----YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMR 176
Query: 810 KECVRGALK-GKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLN 857
E + K T I VTH + D I VM G ++Q G +
Sbjct: 177 AEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 127 bits (321), Expect = 3e-33
Identities = 60/236 (25%), Positives = 106/236 (44%), Gaps = 38/236 (16%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+ +IDL RY + VLKG++L G+ I ++G +GSGKST ++ L +PS G II
Sbjct: 3 LHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 1328 IDGIDISLLGLHD-------------LRSRFGIIPQEPVLFEG-TVRSNID----PIGQY 1369
++G +I+L+ D LR+R ++ Q L+ TV N+ +
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120
Query: 1370 SDEEIWK----SLERCQLKDVVAAK-PDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSR 1424
S + + L + + + K P L S GQ+Q + + R +
Sbjct: 121 SKHDARERALKYLAKVGIDERAQGKYPVHL-----------SGGQQQRVSIARALAMEPD 169
Query: 1425 LLFMDEATASVDSQTDAEIQRIIREEFAA-CTIISIAHRIPTVMD-CDRVIVVDAG 1478
+L DE T+++D + E+ RI+++ T++ + H + VI + G
Sbjct: 170 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 225
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 116 bits (291), Expect = 3e-29
Identities = 59/247 (23%), Positives = 106/247 (42%), Gaps = 43/247 (17%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
+ V D + E LK ++L+ + GD+ +I+G+ GSGKS+ L I G +
Sbjct: 3 LHVIDLHKRYGGH---EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 705 KVCGTT--------------------------AYVAQ-TSWIQNGTIEENILFGLPMNRA 737
V G V Q + + T+ EN++
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 738 KYGEVVRVCCLEKDLEMMEYGDQTEIGERGIN-----LSGGQKQRIQLARAVYQDCDIYL 792
R E+ L+ + + I ER LSGGQ+QR+ +ARA+ + D+ L
Sbjct: 120 LSKHDAR----ERALKYLA---KVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL 172
Query: 793 LDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGR 851
D+ SA+D ++ + + A +GKT+++VTH++ F +V ++ + +G I + G
Sbjct: 173 FDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 232
Query: 852 YNALLNS 858
+ +
Sbjct: 233 PEQVFGN 239
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 118 bits (297), Expect = 2e-30
Identities = 39/207 (18%), Positives = 76/207 (36%), Gaps = 24/207 (11%)
Query: 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343
L ++ + GE + +VG G+GKSTL+ + G I G + L
Sbjct: 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLAL 72
Query: 1344 RFGIIPQEPVLFEGTVRSNIDPIGQY--SDEEIWKS-LERCQLKDVVAAKPDKLDSLVAD 1400
+ Q+ T + + Q+ + E+ L D + ++L
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQL------ 126
Query: 1401 SGDNWSVGQRQLLCLGRVMLKHS-------RLLFMDEATASVDSQTDAEIQRIIRE-EFA 1452
S G+ Q + L V+L+ + +LL +DE S+D + + +I+
Sbjct: 127 -----SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQ 181
Query: 1453 ACTIISIAHRIPTVMD-CDRVIVVDAG 1478
I+ +H + + R ++ G
Sbjct: 182 GLAIVMSSHDLNHTLRHAHRAWLLKGG 208
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 110 bits (277), Expect = 1e-27
Identities = 47/209 (22%), Positives = 91/209 (43%), Gaps = 14/209 (6%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT--TAYVAQTSWIQ 720
L ++ E++ G++ +VG G+GKS+LLA + G M G ++ G A+ A +
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLALH 73
Query: 721 NGTI--EENILFGLPMNRAKYGEVVRVCCLEKDLEMME-YGDQTEIGERGINLSGGQKQR 777
+ ++ F P+ E ++ ++G LSGG+ QR
Sbjct: 74 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQR 133
Query: 778 IQLARAVYQ-------DCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVD 830
++LA V Q + LLD+ +++D S + K +G I++ +H ++
Sbjct: 134 VRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN 193
Query: 831 F-LHNVDLILVMREGMIVQSGRYNALLNS 858
L + +++ G ++ SGR +L
Sbjct: 194 HTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 114 bits (286), Expect = 2e-29
Identities = 43/209 (20%), Positives = 85/209 (40%), Gaps = 27/209 (12%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
DL V Y VL+ IT++I G + G G GK+TL++ ++P G II +G+
Sbjct: 7 DLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGV 63
Query: 1332 DISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNIDPIGQY-----SDEEIWKSLERCQLKD 1385
I ++ + +P+E ++ +V + + + EI +LE ++ D
Sbjct: 64 PI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD 118
Query: 1386 VVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQR 1445
+ S G + + L +L ++ + +D+ ++D + ++ +
Sbjct: 119 ------------LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK 166
Query: 1446 IIREEFAACTIISIAHRIPTVMDCDRVIV 1474
I E I+ I+ R CD
Sbjct: 167 SILEILKEKGIVIISSREELSY-CDVNEN 194
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 107 bits (269), Expect = 5e-27
Identities = 41/208 (19%), Positives = 91/208 (43%), Gaps = 24/208 (11%)
Query: 646 EVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVK 705
E+RD +D + L+ I + I+KG++ G G GK++LL +I + + G++
Sbjct: 4 EIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 706 VCGT--------TAYVAQ-TSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMME 756
G ++ + + ++E+ + + K + + ++ +E
Sbjct: 60 YNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK-------NEIMDALE 112
Query: 757 YGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVR-G 815
+ ++ ++ LS G +R+QLA + + +IY+LDD A+D + + K +
Sbjct: 113 SVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 172
Query: 816 ALKGKTIILVTHQVDFLHNVDLILVMRE 843
KG II ++ + D+ + +
Sbjct: 173 KEKGIVIISSREELSY---CDVNENLHK 197
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 115 bits (288), Expect = 5e-29
Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 25/231 (10%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------- 709
L +++ + KGD+T I+G GSGKS+L+ I G + G+V
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 710 -TAYVAQT-SWIQNGTIEENILFGLPMN--------RAKYGEVVRVCCLEKDLEMMEYGD 759
QT ++ T+ EN+L G K +EK +++E+
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 760 QTEIGERGI-NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK 818
+ + +R LSGGQ + +++ RA+ + + ++D+ + V DIF + K
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 819 GKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLNSGMDFGALVAA 868
G T +++ H++D + N D + VM G I+ GR + + + +V
Sbjct: 200 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEI 250
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 113 bits (285), Expect = 2e-28
Identities = 50/220 (22%), Positives = 90/220 (40%), Gaps = 15/220 (6%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
++ + L G+++S++ G+ ++G GSGKSTLI V ++ GR+ +
Sbjct: 9 NIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK 66
Query: 1332 DISLLGLHDL-RSRFGIIPQEPVLFEG-TVRSNIDPIGQYSDEEIWKSLERCQLKDVVAA 1389
DI+ +L Q P + TV N+ E SL +
Sbjct: 67 DITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE 126
Query: 1390 KPDKLDSLVADSG---------DNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTD 1440
+K ++ S GQ +L+ +GR ++ + +++ MDE A V
Sbjct: 127 MVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLA 186
Query: 1441 AEIQRIIREEFAA-CTIISIAHRIPTVMD-CDRVIVVDAG 1478
+I + E A T + I HR+ V++ D + V+ G
Sbjct: 187 HDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNG 226
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 113 bits (284), Expect = 1e-28
Identities = 47/233 (20%), Positives = 97/233 (41%), Gaps = 23/233 (9%)
Query: 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILG------ 695
+I +EV+ + +K I+L++ +G + ++G G+GK++ L++I G
Sbjct: 4 DIVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK 60
Query: 696 ---------EMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVC 746
+K + + G T+ EN++ G + K G +
Sbjct: 61 GKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL- 119
Query: 747 CLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGS 806
E + + + + G LSGG++Q + + RA+ + ++D+ + S
Sbjct: 120 --EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVS 176
Query: 807 DIFKECVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLNS 858
++F+ + +G TI+LV V V+ G IV G+ + LL++
Sbjct: 177 EVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 106 bits (266), Expect = 3e-26
Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 14/213 (6%)
Query: 1272 DLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGI 1331
L V Y + +KGI L + G+ + ++G G+GK+T + LV G+II +G
Sbjct: 11 SLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ 68
Query: 1332 DISLLGLHDLRSR-FGIIPQEPVLFEG-TVRSNI--DPIGQYSDEEIWKSLERCQLKDVV 1387
DI+ H + ++P+ +F TV N+ + E I + LE +
Sbjct: 69 DITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW------I 122
Query: 1388 AAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRII 1447
+ +L + G S G++Q+L +GR ++ +LL MDE + + +E+ +I
Sbjct: 123 FSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI 182
Query: 1448 REEFAA-CTIISIAHRIPTVMD-CDRVIVVDAG 1478
++ TI+ + + V++ G
Sbjct: 183 QKINQEGTTILLVEQNALGALKVAHYGYVLETG 215
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 112 bits (282), Expect = 3e-28
Identities = 50/211 (23%), Positives = 91/211 (43%), Gaps = 16/211 (7%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTT-------AYVAQ 715
++ ++LE+K G+ ++G G GK++ L I G G++ + +V
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 716 TSWIQNGTIEENILF---GLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGI---- 768
+ L+ + N A ++ +V E D + E + + E
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR 138
Query: 769 NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTH 827
LSGGQ+QR+ L RA+ + ++L+D+ S +DA + E + + G T I VTH
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198
Query: 828 QVDFLHNV-DLILVMREGMIVQSGRYNALLN 857
+ D I VM G++ Q G + + +
Sbjct: 199 DQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 105 bits (262), Expect = 1e-25
Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 28/226 (12%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
V L+D+ + T ++ ++L + GE + ++G +G GK+T +++ L EPS G+I
Sbjct: 4 VRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 1328 IDGIDISLLGLHDLR----SRFGIIPQEPVLFEGTVRSNIDPIGQY--------SDEEIW 1375
I ++ ++ Q L+ + D+ +
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR 121
Query: 1376 KSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASV 1435
+ E L +++ KP +L S GQRQ + LGR +++ ++ MDE +++
Sbjct: 122 EVAELLGLTELLNRKPREL-----------SGGQRQRVALGRAIVRKPQVFLMDEPLSNL 170
Query: 1436 DSQTDAEIQRIIRE--EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
D++ ++ +++ T I + H M DR+ V++ G
Sbjct: 171 DAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRG 216
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 112 bits (281), Expect = 3e-28
Identities = 50/223 (22%), Positives = 102/223 (45%), Gaps = 24/223 (10%)
Query: 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGR 1325
G V + DL+ R +LKGI+ I GE G++G G+GK+T +++ L++PS G
Sbjct: 1 GAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 1326 IIIDGIDISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNIDPIGQYS-------DEEIWKS 1377
+ + G ++ H++R +P+E + + + + +E + ++
Sbjct: 59 VTVFGKNVVEE-PHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA 117
Query: 1378 LERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDS 1437
E L + + + S G + L + R ++ + RL +DE T+ +D
Sbjct: 118 TEIAGLGEKIKDRVSTY-----------SKGMVRKLLIARALMVNPRLAILDEPTSGLDV 166
Query: 1438 QTDAEIQRIIREEFAAC-TIISIAHRIPTVMD-CDRVIVVDAG 1478
E+++I+++ TI+ +H + V CDR+ ++ G
Sbjct: 167 LNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNG 209
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 108 bits (272), Expect = 6e-27
Identities = 53/228 (23%), Positives = 105/228 (46%), Gaps = 21/228 (9%)
Query: 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGK 703
AV V+D + E LK I+ EI++G++ ++G G+GK++ L I + SG
Sbjct: 2 AVVVKDLRKRIGKK---EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 704 VKVCGTT------------AYVAQ-TSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEK 750
V V G +Y+ + +N E + F + E+ + +E+
Sbjct: 59 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM--VER 116
Query: 751 DLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFK 810
E+ G+ +I +R S G +++ +ARA+ + + +LD+ S +D ++ K
Sbjct: 117 ATEIAGLGE--KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRK 174
Query: 811 ECVRGALKGKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLN 857
+ + +G TI++ +H + + + D I ++ G IV++G L
Sbjct: 175 ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 106 bits (266), Expect = 3e-26
Identities = 62/228 (27%), Positives = 107/228 (46%), Gaps = 23/228 (10%)
Query: 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704
V++++ +W + K+INL+I +G+ VG G GKS+LL I G SG +
Sbjct: 1 VQLQNVTKAWGEV---VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 705 KVCGT-----------TAYVAQTSWIQNG-TIEENILFGLPMNRAKYGEVV-RVCCLEKD 751
+ V Q+ + ++ EN+ FGL + AK + RV + +
Sbjct: 58 FIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV 117
Query: 752 LEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKE 811
L++ D+ + LSGGQ+QR+ + R + + ++LLD+ S +DA + E
Sbjct: 118 LQLAHLLDR-----KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE 172
Query: 812 CVRGALK-GKTIILVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLN 857
R + G+T+I VTH + D I+V+ G + Q G+ L +
Sbjct: 173 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 106 bits (265), Expect = 4e-26
Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 26/222 (11%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
V L ++ + V K I L IH GE + VG +G GKSTL+++ L + G +
Sbjct: 1 VQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNIDPIGQYS-------DEEIWKSLE 1379
I ++ G++ Q L+ +V N+ + + ++ + + E
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 116
Query: 1380 RCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQT 1439
QL ++ KP L S GQRQ + +GR ++ + +DE +++D+
Sbjct: 117 VLQLAHLLDRKPKAL-----------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 165
Query: 1440 DAEIQRIIRE--EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
+++ I + T+I + H M D+++V+DAG
Sbjct: 166 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAG 207
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 105 bits (262), Expect = 8e-26
Identities = 43/219 (19%), Positives = 97/219 (44%), Gaps = 24/219 (10%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+++ L ++++ L ++L + GE ++G TG+GK+ +++ P GRI+
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 1328 IDGIDISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNIDP----IGQYSDEEIWKSLERCQ 1382
+DG D++ L + + Q LF V+ N++ + + + +
Sbjct: 59 LDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116
Query: 1383 LKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAE 1442
++ ++ P L S G++Q + L R ++ + ++L +DE +++D +T
Sbjct: 117 IEHLLDRNPLTL-----------SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 1443 IQRIIRE--EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
+ ++ + T++ I H DR+ VV G
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDG 204
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 104 bits (261), Expect = 1e-25
Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 21/213 (9%)
Query: 659 GEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT--------- 709
L N++L+++ G+ I+G G+GK+ L I G SG++ + G
Sbjct: 12 KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK 71
Query: 710 --TAYVAQ-TSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGER 766
A+V Q S + +++N+ FG+ M + K + RV +DL++ D+
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK--RVLDTARDLKIEHLLDR-----N 124
Query: 767 GINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILV 825
+ LSGG++QR+ LARA+ + I LLD+ SA+D T + + K T++ +
Sbjct: 125 PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184
Query: 826 THQVDFLHNV-DLILVMREGMIVQSGRYNALLN 857
TH + D I V+ +G ++Q G+ +
Sbjct: 185 THDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 101 bits (253), Expect = 2e-24
Identities = 44/225 (19%), Positives = 98/225 (43%), Gaps = 25/225 (11%)
Query: 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327
+ + ++ ++ + L + ++I GE+ G++G +G+GK+T +++ L PS G +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 1328 IDGIDISLLGLHDLRSRF---GIIPQEPVLFEG-TVRSNIDPI-------GQYSDEEIWK 1376
D ++ G + G++ Q L+ T NI + + + +
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 1377 SLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVD 1436
+ + V+ P +L S Q+Q + L R ++K LL +DE +++D
Sbjct: 124 VAKILDIHHVLNHFPREL-----------SGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
Query: 1437 SQTDAEIQRIIRE--EFAACTIISIAHRIPTVMD-CDRVIVVDAG 1478
++ + +++E T++ ++H + DRV V+ G
Sbjct: 173 ARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKG 217
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 98.2 bits (244), Expect = 3e-23
Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 25/215 (11%)
Query: 663 LKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------- 709
L N+N+ I+ G+ I+G G+GK++ + I G +G++
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 710 ---TAYVAQ-TSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGE 765
V Q + N T ENI F L ++ + ++ E+ + D +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPL-----TNMKMSKEEIRKRVEEVAKILDIHHVLN 135
Query: 766 RGIN-LSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTII 823
LSG Q+QR+ LARA+ +D + LLD+ FS +DA + G T++
Sbjct: 136 HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLL 195
Query: 824 LVTHQVDFLHNV-DLILVMREGMIVQSGRYNALLN 857
+V+H + + D + V+ +G +VQ G+ L +
Sbjct: 196 VVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 92.0 bits (228), Expect = 4e-21
Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 21/208 (10%)
Query: 665 NINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-----------TAYV 713
N++ E+ D ++G G+GKS L I G + G+V++ G +V
Sbjct: 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 714 AQ-TSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSG 772
Q + + ++ NI +GL + RV + + L + D + LSG
Sbjct: 76 PQDYALFPHLSVYRNIAYGLRNVERVERD-RRVREMAEKLGIAHLLD-----RKPARLSG 129
Query: 773 GQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDF 831
G++QR+ LARA+ + LLD+ SAVD T + +E + I+ VTH +
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Query: 832 -LHNVDLILVMREGMIVQSGRYNALLNS 858
D + VM G IV+ G+ L ++
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKELFSA 217
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 92.0 bits (228), Expect = 4e-21
Identities = 46/195 (23%), Positives = 84/195 (43%), Gaps = 11/195 (5%)
Query: 1288 ITLSIH-GGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346
+ + G + ++G TG+GKS +++ +V+P G + ++G DI+ L R G
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73
Query: 1347 IIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWS 1406
+PQ+ LF G + E + + ++ + + LD A S
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL-GIAHLLDRKPAR----LS 128
Query: 1407 VGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIRE--EFAACTIISIAHRIP 1464
G+RQ + L R ++ RLL +DE ++VD +T + +R I+ + H +
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1465 TVMD-CDRVIVVDAG 1478
D V V+ G
Sbjct: 189 EAAMLADEVAVMLNG 203
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 71.6 bits (174), Expect = 1e-14
Identities = 11/182 (6%), Positives = 33/182 (18%), Gaps = 28/182 (15%)
Query: 1297 KIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFE 1356
KI + G G GK+TL++ + + + ++ +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 1357 GTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLG 1416
S + + +
Sbjct: 62 KFFTSKKLVGSYGVNVQYF----------------------------EELAIPILERAYR 93
Query: 1417 RVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVD 1476
+++ +DE +++ + +
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 1477 AG 1478
Sbjct: 154 GA 155
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 68.1 bits (165), Expect = 2e-13
Identities = 16/177 (9%), Positives = 40/177 (22%), Gaps = 16/177 (9%)
Query: 677 AIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNR 736
I G G GK++L+ I+ + K + + E
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIF---- 59
Query: 737 AKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDV 796
K + + + A + ++D+
Sbjct: 60 -----------SSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDE- 107
Query: 797 FSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYN 853
++ + ++ D V I + ++++ N
Sbjct: 108 IGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPEN 164
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.6 bits (161), Expect = 8e-13
Identities = 19/171 (11%), Positives = 45/171 (26%), Gaps = 7/171 (4%)
Query: 1298 IGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEG 1357
+ + G G GK+TLI +++ SG + + G + +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 1358 TVRSNIDPI------GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQ 1411
D ++ L L++ + V D + +
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123
Query: 1412 LLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHR 1462
+ R L + + ++ I + ++ +R
Sbjct: 124 FIQAVRQTLSTPGTIILGTIPVPKGKPLAL-VEEIRNRKDVKVFNVTKENR 173
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 59.6 bits (142), Expect = 1e-09
Identities = 44/304 (14%), Positives = 90/304 (29%), Gaps = 2/304 (0%)
Query: 322 LLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFV 381
+ F + I+ L++ +D GK+ + ++++ +
Sbjct: 10 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILR 69
Query: 382 EVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSD 441
+ S S G ++ + + Q S
Sbjct: 70 GITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASS 129
Query: 442 MMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGIIGVMIFVVMGTKRNNRFQFNVMK 501
L V I I+++ I VV V I + + +KR N+
Sbjct: 130 SSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQN 189
Query: 502 NRDSRMKATNEMLNYMRVIKFQAWEDHFNKRI--LSFRESEFGWLTKFMYSISGNIIVMW 559
+ +ML + + ++ KR +S + G SIS II +
Sbjct: 190 TMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLI 249
Query: 560 STPVLISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARL 619
++ L L A+ L AG++ + L P+++ + M + L
Sbjct: 250 ASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTL 309
Query: 620 DKYM 623
+
Sbjct: 310 FAIL 313
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 54.9 bits (130), Expect = 3e-08
Identities = 41/311 (13%), Positives = 97/311 (31%), Gaps = 9/311 (2%)
Query: 322 LLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVD------FTSGKSSSFYEGYYLVLIL 375
++ + + T + I++ + + P+LI+ +D + + + + L
Sbjct: 8 FVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIAL 67
Query: 376 LVAKFVEVFSTHQFNFNSQKLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVD 435
+ V + +Q I + LY LS + VGQ+++ + D
Sbjct: 68 FIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVIND 127
Query: 436 AQQLSDMMLQLHAVWLMPLQISVALILLYNCLGASVITTVVGIIGVMIFVVMGTKRNNRF 495
+Q D +L + + + + L + + I I V R
Sbjct: 128 VEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRK 187
Query: 496 QFNVMKNRDSRM--KATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISG 553
+ + + V F ++ L ++
Sbjct: 188 LTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYS 247
Query: 554 NIIVMWSTPVL-ISTLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQA 612
+ T + I + L + G++ ++L P+R S +L+Q+
Sbjct: 248 FAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQS 307
Query: 613 MISLARLDKYM 623
S+ R+ + +
Sbjct: 308 FASMDRVFQLI 318
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 41.8 bits (96), Expect = 4e-04
Identities = 40/311 (12%), Positives = 89/311 (28%), Gaps = 10/311 (3%)
Query: 948 WWGVVAVLLLSVAWQGSLMAGDYWLSY---------ETSEDHSMSFNPSLFIGVYGSTAV 998
+ + A +++ + G M + Y + D + +
Sbjct: 13 KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVI 72
Query: 999 LSMVILVVRAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNID 1058
+ I +R Y K ++ + F+ G+++SR D
Sbjct: 73 VRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTK 132
Query: 1059 LFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLVIPLAWANYWYRGYYLSTSRELTRLD 1118
F+ + IT++ I + + + R+LTR
Sbjct: 133 DFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRER 192
Query: 1119 SITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLE 1178
S A V E + G+ +++F + + + L + N + +
Sbjct: 193 SQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAIN 252
Query: 1179 LLGSFTFCLATLF-MILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVE 1237
+ + L S I + + Y L G L + + S++
Sbjct: 253 TVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMD 312
Query: 1238 RIKQFTEIPSE 1248
R+ Q + +
Sbjct: 313 RVFQLIDEDYD 323
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1479 | |||
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.97 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.97 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.94 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.93 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.92 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.9 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.67 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.64 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.41 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.35 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.33 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.21 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.19 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.97 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.81 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.65 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.46 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.23 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.89 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.86 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.83 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.82 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.72 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.69 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.29 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.04 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.81 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.63 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.59 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.57 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.47 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.17 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.17 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.13 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 95.11 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.08 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.07 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.0 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.0 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.9 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.75 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.75 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.71 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.53 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.43 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.38 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.35 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.2 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.18 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.16 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 94.15 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.06 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.01 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.85 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.84 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.77 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.73 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 93.7 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.68 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.63 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 93.62 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.52 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.51 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 93.47 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.44 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.23 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.23 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.14 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 93.11 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 93.11 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.09 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.06 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 92.92 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.81 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 92.73 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 92.7 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.64 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 92.63 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.57 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.56 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.56 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.54 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.51 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.5 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 92.49 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.34 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 92.26 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 92.2 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 92.04 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 91.99 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.95 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.94 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 91.84 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 91.79 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.76 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 91.75 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.66 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 91.65 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 91.62 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 91.57 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 91.34 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 91.3 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.26 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.25 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 91.15 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 90.98 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.91 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.9 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 90.89 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.83 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 90.8 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 90.65 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 90.58 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 90.55 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 90.42 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 90.39 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.34 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 90.25 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 90.22 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.22 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 90.19 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 90.15 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.13 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 90.13 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.11 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 90.06 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 89.96 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 89.95 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.94 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 89.93 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 89.88 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.8 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 89.7 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 89.68 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 89.65 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 89.59 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 89.58 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 89.48 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.44 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 89.44 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.41 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 89.39 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 89.39 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 89.38 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 89.38 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 89.38 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 89.37 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 89.3 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 89.29 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 89.26 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.16 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 89.13 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 89.12 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.1 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 89.1 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 89.04 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 89.0 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 88.91 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 88.83 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 88.8 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.78 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.64 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 88.64 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 88.56 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.22 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 88.13 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 88.1 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.05 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 88.01 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 87.98 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 87.92 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 87.91 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 87.82 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.78 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 87.71 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 87.6 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 87.57 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 87.53 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 87.41 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 87.4 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 87.37 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.34 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 87.3 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 87.26 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 87.21 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 87.08 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.06 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 87.04 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 86.91 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 86.91 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 86.89 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 86.79 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.77 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 86.72 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 86.6 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 86.55 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 86.46 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 86.43 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 86.43 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 86.4 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.24 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 86.23 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 86.18 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 86.16 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 86.15 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 86.1 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 86.03 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 85.98 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 85.92 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 85.89 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 85.88 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 85.88 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 85.87 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 85.78 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 85.77 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 85.69 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 85.65 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 85.58 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.58 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 85.53 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 85.44 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 85.4 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 85.32 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 85.32 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 85.21 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 85.2 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 85.17 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 85.11 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 85.01 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 84.9 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 84.74 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 84.73 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 84.71 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 84.66 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 84.65 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 84.62 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 84.6 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 84.57 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 84.56 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 84.5 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 84.49 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 84.41 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 84.24 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 84.23 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 84.15 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 84.15 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 84.15 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 84.07 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 84.06 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 84.06 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 84.04 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 84.0 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 83.97 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 83.97 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 83.96 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 83.95 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 83.82 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 83.76 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 83.7 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 83.68 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 83.67 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 83.4 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 83.34 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 83.31 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 83.31 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 83.3 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 83.11 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 83.11 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 83.09 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 83.04 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 82.99 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 82.96 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 82.92 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 82.9 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 82.84 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 82.81 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 82.75 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 82.65 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 82.63 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 82.62 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 82.61 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 82.6 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 82.49 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 82.32 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 82.32 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 82.19 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 82.09 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 82.01 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 81.95 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 81.93 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 81.92 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 81.8 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 81.75 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 81.69 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 81.61 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 81.55 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 81.55 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 81.51 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 81.42 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 81.29 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 81.28 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 81.09 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 80.99 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 80.83 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 80.82 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 80.74 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 80.64 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 80.61 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 80.58 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 80.43 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 80.38 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 80.36 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 80.27 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 80.25 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 80.16 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 80.15 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 80.06 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=461.83 Aligned_cols=217 Identities=32% Similarity=0.532 Sum_probs=209.7
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 99731799953556359999512211389838929999979999888999998505789862899969736998956661
Q 000463 1263 PAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLR 1342 (1479)
Q Consensus 1263 p~~g~I~~~nvs~~Y~~~~~~vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR 1342 (1479)
..+|.|+|+||+|+|+++.+++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+++|
T Consensus 12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 77887999988999599997606443899839989999889998099999999712786300015399875307888863
Q ss_pred CCEEEECCCCCCCCCCHHHHCCCC-CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 001787376654666576605999-9999999999999849538997194875300018999889059999999998616
Q 000463 1343 SRFGIIPQEPVLFEGTVRSNIDPI-GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLK 1421 (1479)
Q Consensus 1343 ~~i~iIpQdp~LF~GTIR~NLdp~-~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~LARALLr 1421 (1479)
+++++|||+|.+|+||||+||... ...+|+++++|++.+++.+++..+|+||||.++++|.+||||||||+||||||++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCC
Q ss_conf 9978998378999999859999999998737947899715913563019799980999
Q 000463 1422 HSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1422 ~~~ILiLDEaTsslD~~te~~Iq~~I~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~ 1479 (1479)
+|+|+|||||||+||++|+..|++.|++..+++|+|+||||++++..||||++|++|+
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~ 229 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGH 229 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCE
T ss_conf 9989998376544797799999999998753888999968999998599999998999
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=458.97 Aligned_cols=213 Identities=33% Similarity=0.590 Sum_probs=207.7
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 17999535563599995122113898389299999799998889999985057898628999697369989566610017
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
+|+|+||+|+|+++.+++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||.|+++++.+++|++++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EECCCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE
Q ss_conf 873766546665766059999-9999999999998495389971948753000189998890599999999986169978
Q 000463 1347 IIPQEPVLFEGTVRSNIDPIG-QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRL 1425 (1479)
Q Consensus 1347 iIpQdp~LF~GTIR~NLdp~~-~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~LARALLr~~~I 1425 (1479)
+|||+|.+|+||||+||.... ..++++++++++.+++.+++..+|+|+++.++++|.+||||||||+||||||+++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 98244655784000352235755438889999999755788876320134432787886698898987544344416513
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCC
Q ss_conf 998378999999859999999998737947899715913563019799980999
Q 000463 1426 LFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1426 LiLDEaTsslD~~te~~Iq~~I~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~ 1479 (1479)
||||||||+||+.|+..|.+.|++..+++|+|+||||++++..||||+||++|+
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~ 214 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGK 214 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTE
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCE
T ss_conf 556477655598999999999999858998999978899998499999998999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=450.66 Aligned_cols=216 Identities=31% Similarity=0.539 Sum_probs=208.4
Q ss_pred CCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC
Q ss_conf 97317999535563599995122113898389299999799998889999985057898628999697369989566610
Q 000463 1264 AHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS 1343 (1479)
Q Consensus 1264 ~~g~I~~~nvs~~Y~~~~~~vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~ 1343 (1479)
..|.|+|+||+|+|++...++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++..++|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CEEEECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 01787376654666576605999--9999999999999849538997194875300018999889059999999998616
Q 000463 1344 RFGIIPQEPVLFEGTVRSNIDPI--GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLK 1421 (1479)
Q Consensus 1344 ~i~iIpQdp~LF~GTIR~NLdp~--~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~LARALLr 1421 (1479)
+++++||+|.+|++|+++|+... ..++++++++|++.+++.+++..+|+|||+.++++|.+||||||||+||||||++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCC
Q ss_conf 9978998378999999859999999998737947899715913563019799980999
Q 000463 1422 HSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1422 ~~~ILiLDEaTsslD~~te~~Iq~~I~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~ 1479 (1479)
+|+|||||||||+||++|+..|++.|++..+++|+|+||||++++..||+|+||++|+
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~ 227 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGI 227 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCE
T ss_conf 9988995164445898899999999987522788999988799998599999998999
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=438.00 Aligned_cols=217 Identities=26% Similarity=0.482 Sum_probs=205.6
Q ss_pred CCCCCEEEEEEEEEECCC-CCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 997317999535563599-9951221138983892999997999988899999850578986289996973699895666
Q 000463 1263 PAHGNVDLIDLQVRYRSN-TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL 1341 (1479)
Q Consensus 1263 p~~g~I~~~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L 1341 (1479)
+.+|.|+|+||+|+|+.. ..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|++||.|+++++..++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HCCEEEECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1001787376654666576605999--99999999999998495389971948753000189998890599999999986
Q 000463 1342 RSRFGIIPQEPVLFEGTVRSNIDPI--GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1342 R~~i~iIpQdp~LF~GTIR~NLdp~--~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~LARAL 1419 (1479)
|+++++|||+|.+|++|||+|+... ...++++++++.+++++.+++..+|+|+++.++++|.+||||||||+||||||
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf 87765404565002763465545421013027889999999989999985612111367516766895470489986044
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCHHHHHHCCEEEEEECCC
Q ss_conf 169978998378999999859999999998737--947899715913563019799980999
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTsslD~~te~~Iq~~I~~~~~--~~TvI~IAHRl~ti~~~DrIlVLd~G~ 1479 (1479)
+++|+|++||||||+||+.++..|++.|++..+ ++|+|+||||++++..||||+||++|+
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~ 228 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGA 228 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTE
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCE
T ss_conf 56870787167576568536899999999976506989999959799998599999998999
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=446.94 Aligned_cols=211 Identities=31% Similarity=0.604 Sum_probs=203.7
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 79995355635999951221138983892999997999988899999850578986289996973699895666100178
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
|+++||+|+|+++ +++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+++|+++++
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 7999889987999-841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred ECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE
Q ss_conf 7376654666576605999--99999999999998495389971948753000189998890599999999986169978
Q 000463 1348 IPQEPVLFEGTVRSNIDPI--GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRL 1425 (1479)
Q Consensus 1348 IpQdp~LF~GTIR~NLdp~--~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~LARALLr~~~I 1425 (1479)
|||||.+|+||||+|+... ...++++++++++.+++.+++..+|+++++.++++|.+||||||||+||||||+++|+|
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred ECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 75665457853454301244555423567789999975554203742101523687898799999999999998529989
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCC
Q ss_conf 998378999999859999999998737947899715913563019799980999
Q 000463 1426 LFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1426 LiLDEaTsslD~~te~~Iq~~I~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~ 1479 (1479)
|+||||||+||+.++..|++.|++..+++|+|+||||++++..||||+||++|+
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~ 214 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQ 214 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTE
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCE
T ss_conf 996588655698899999887888717998999978799998499999998999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=407.06 Aligned_cols=226 Identities=31% Similarity=0.479 Sum_probs=210.3
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------
Q ss_conf 973199972389806999964310014997389599999189997689999984684467748998795-----------
Q 000463 641 DNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT----------- 709 (1479)
Q Consensus 641 ~~~~i~~~~~~f~w~~~~~~~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~----------- 709 (1479)
.++.|+++|++|+|++. ..++|+|+||++++|++++|+|++|||||||+++|+|.+++.+|+|.++|.
T Consensus 13 ~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 78879999889995999-97606443899839989999889998099999999712786300015399875307888863
Q ss_pred --EEEEECCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf --899904676888858899733998-99422999999843299997434688631356988666689999999999812
Q 000463 710 --TAYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQ 786 (1479)
Q Consensus 710 --iayv~Q~~wi~~~Ti~eNIlfg~~-~~~~~y~~v~~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LARAly~ 786 (1479)
++||+|+|+++++||+|||.||.+ .+.++..++++.+.+.++++.+|+|.+|.+|++|.+|||||||||+||||+++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHH
Q ss_conf 99899980766788965699999999956319969999804876101288899993977989148578971176468999
Q 000463 787 DCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALV 866 (1479)
Q Consensus 787 ~~~i~lLDdp~salD~~~~~~i~~~~~~~~l~~kTvilvTh~~~~l~~~D~i~vl~~G~i~~~G~~~el~~~~~~f~~l~ 866 (1479)
+|+|++||||||+||++++..+++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++||+++++.|.++.
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~-~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l~ 250 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQE-ALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLY 250 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHH-HHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHH
T ss_conf 998999837654479779999999-9998753888999968999998599999998999999889999986884999999
Q ss_pred HH
Q ss_conf 98
Q 000463 867 AA 868 (1479)
Q Consensus 867 ~~ 868 (1479)
+.
T Consensus 251 ~~ 252 (255)
T d2hyda1 251 SI 252 (255)
T ss_dssp TT
T ss_pred HH
T ss_conf 97
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=403.35 Aligned_cols=224 Identities=32% Similarity=0.471 Sum_probs=208.2
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE-------------E
Q ss_conf 199972389806999964310014997389599999189997689999984684467748998795-------------8
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------T 710 (1479)
Q Consensus 644 ~i~~~~~~f~w~~~~~~~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~-------------i 710 (1479)
.|+++|++|+|+.+ .+++|+|+||++++|++++|+|++|||||||+++|+|.++|.+|+|.++|. +
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEEECCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99904676888858899733998-99422999999843299997434688631356988666689999999999812998
Q 000463 711 AYVAQTSWIQNGTIEENILFGLP-MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCD 789 (1479)
Q Consensus 711 ayv~Q~~wi~~~Ti~eNIlfg~~-~~~~~y~~v~~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LARAly~~~~ 789 (1479)
+||+|+|+++++||+|||.++.+ .+.+++.++++.|.+.++++.+|.|.+|.+|++|.+|||||||||+||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHC-CCCHHHHHHH
Q ss_conf 999807667889656999999999563199699998048761012888999939779891485789711-7646899998
Q 000463 790 IYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNS-GMDFGALVAA 868 (1479)
Q Consensus 790 i~lLDdp~salD~~~~~~i~~~~~~~~l~~kTvilvTh~~~~l~~~D~i~vl~~G~i~~~G~~~el~~~-~~~f~~l~~~ 868 (1479)
|+|||||||+||+.++.++++. +..+.+++|+|+|||+++.+..+|+|++|++|+|++.|+++|++++ ++.|.++...
T Consensus 160 ililDEpts~LD~~~~~~i~~~-l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRN-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHH-HHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHH-HHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 3556477655598999999999-999858998999978899998499999998999999889999982998789999998
Q ss_pred H
Q ss_conf 6
Q 000463 869 H 869 (1479)
Q Consensus 869 ~ 869 (1479)
+
T Consensus 239 Q 239 (241)
T d2pmka1 239 Q 239 (241)
T ss_dssp H
T ss_pred H
T ss_conf 1
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=397.65 Aligned_cols=226 Identities=31% Similarity=0.467 Sum_probs=210.8
Q ss_pred CCCEEEEEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------
Q ss_conf 7319997238980699996431001499738959999918999768999998468446774899879-------------
Q 000463 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG------------- 708 (1479)
Q Consensus 642 ~~~i~~~~~~f~w~~~~~~~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g------------- 708 (1479)
.+.|+++|++|+|+.. +.++|+|+||++++|+++||+|++|||||||+++|+|.++|.+|+|.++|
T Consensus 11 ~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 11 TGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 3079999889992999-976353328998599999999999985999999986216888468987880121110665420
Q ss_pred EEEEEECCCCCCCCCHHHHHHCCCC--CCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 5899904676888858899733998--99422999999843299997434688631356988666689999999999812
Q 000463 709 TTAYVAQTSWIQNGTIEENILFGLP--MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQ 786 (1479)
Q Consensus 709 ~iayv~Q~~wi~~~Ti~eNIlfg~~--~~~~~y~~v~~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LARAly~ 786 (1479)
.++|++|+|+++++|+++|+.+|.+ .+.++..++++.|.+.++++.+|.|.+|.+|++|.+|||||||||+||||+++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHH
Q ss_conf 99899980766788965699999999956319969999804876101288899993977989148578971176468999
Q 000463 787 DCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALV 866 (1479)
Q Consensus 787 ~~~i~lLDdp~salD~~~~~~i~~~~~~~~l~~kTvilvTh~~~~l~~~D~i~vl~~G~i~~~G~~~el~~~~~~f~~l~ 866 (1479)
+|+|++||||||+||+.++..+++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++|++++++.|.++.
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l~ 248 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLH 248 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHH-HHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHH
T ss_conf 998899516444589889999999-9987522788999988799998599999998999999889999986893999999
Q ss_pred HHH
Q ss_conf 986
Q 000463 867 AAH 869 (1479)
Q Consensus 867 ~~~ 869 (1479)
+.+
T Consensus 249 ~~Q 251 (253)
T d3b60a1 249 KMQ 251 (253)
T ss_dssp HHT
T ss_pred HHC
T ss_conf 972
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=395.39 Aligned_cols=226 Identities=26% Similarity=0.391 Sum_probs=205.6
Q ss_pred CCCEEEEEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE------------
Q ss_conf 73199972389806999964310014997389599999189997689999984684467748998795------------
Q 000463 642 NIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------ 709 (1479)
Q Consensus 642 ~~~i~~~~~~f~w~~~~~~~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~------------ 709 (1479)
++.|+++|++|+|+...+.++|+|+||++++|++++|+|++|||||||+++|+|.++|.+|+|.++|.
T Consensus 9 ~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 88 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 88 (251)
T ss_dssp CCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHHH
T ss_conf 33699999899889999997674438998499899999999984999999986143787689988998531101378887
Q ss_pred -EEEEECCCCCCCCCHHHHHHCCCCC--CHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf -8999046768888588997339989--9422999999843299997434688631356988666689999999999812
Q 000463 710 -TAYVAQTSWIQNGTIEENILFGLPM--NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQ 786 (1479)
Q Consensus 710 -iayv~Q~~wi~~~Ti~eNIlfg~~~--~~~~y~~v~~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LARAly~ 786 (1479)
++||+|+|+++++||+|||.+|... +.....+..+.+.+...++.+|.|.+|.++++|.+|||||||||+||||+++
T Consensus 89 ~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~ 168 (251)
T d1jj7a_ 89 QVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIR 168 (251)
T ss_dssp HEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCCC
T ss_conf 76540456500276346554542101302788999999998999998561211136751676689547048998604456
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHHH
Q ss_conf 9989998076678896569999999995631-996999980487610128889999397798914857897117646899
Q 000463 787 DCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGAL 865 (1479)
Q Consensus 787 ~~~i~lLDdp~salD~~~~~~i~~~~~~~~l-~~kTvilvTh~~~~l~~~D~i~vl~~G~i~~~G~~~el~~~~~~f~~l 865 (1479)
+|+|++||||||+||+++..++++....... .++|+|+|||+++.+..||+|++|++|+|++.|+++||++.++.|.++
T Consensus 169 ~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~~l 248 (251)
T d1jj7a_ 169 KPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAM 248 (251)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
T ss_conf 87078716757656853689999999997650698999995979999859999999899999988999998597588999
Q ss_pred HH
Q ss_conf 99
Q 000463 866 VA 867 (1479)
Q Consensus 866 ~~ 867 (1479)
++
T Consensus 249 ~~ 250 (251)
T d1jj7a_ 249 VQ 250 (251)
T ss_dssp HC
T ss_pred HC
T ss_conf 62
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=389.72 Aligned_cols=219 Identities=42% Similarity=0.700 Sum_probs=202.9
Q ss_pred CCEEEEEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCC
Q ss_conf 31999723898069999643100149973895999991899976899999846844677489987958999046768888
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNG 722 (1479)
Q Consensus 643 ~~i~~~~~~f~w~~~~~~~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~~wi~~~ 722 (1479)
..|.+++.+| .++|+|+|+||++++|++++|+|++|||||||+++|+|.+++++|+|.++|+++|++|+||++++
T Consensus 37 ~~i~~~~~~~-----~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~ 111 (281)
T d1r0wa_ 37 NNVSFSHLCL-----VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPG 111 (281)
T ss_dssp ---CHHHHHH-----TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSE
T ss_pred CCEEEEECCC-----CCCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCC
T ss_conf 9679997698-----99767737599985999999998999829999999957974788289999999998164302676
Q ss_pred CHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
Q ss_conf 58899733998994229999998432999974346886313569886666899999999998129989998076678896
Q 000463 723 TIEENILFGLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDA 802 (1479)
Q Consensus 723 Ti~eNIlfg~~~~~~~y~~v~~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~ 802 (1479)
||+|||.||..+++.+++++++.|.+..++..++.++.+.++++|.+|||||||||+||||++++|+|++||||||+||+
T Consensus 112 tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~ 191 (281)
T d1r0wa_ 112 TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 191 (281)
T ss_dssp EHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCH
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCH
T ss_conf 03214203334560579999999776999984612332355554237799999999999999869635133385544898
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHH
Q ss_conf 5699999999956319969999804876101288899993977989148578971176468999
Q 000463 803 HTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALV 866 (1479)
Q Consensus 803 ~~~~~i~~~~~~~~l~~kTvilvTh~~~~l~~~D~i~vl~~G~i~~~G~~~el~~~~~~f~~l~ 866 (1479)
.+...+++.++....+++|+|++||+++.+..||+|++|++|+|++.|+++||++...+|...+
T Consensus 192 ~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~ 255 (281)
T d1r0wa_ 192 FTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKL 255 (281)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCHHHHHH
T ss_conf 9999999999988628999999925289998599999998999999878999960594899987
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=393.11 Aligned_cols=221 Identities=29% Similarity=0.509 Sum_probs=204.4
Q ss_pred EEEEEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE-------------EE
Q ss_conf 99972389806999964310014997389599999189997689999984684467748998795-------------89
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------TA 711 (1479)
Q Consensus 645 i~~~~~~f~w~~~~~~~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~-------------ia 711 (1479)
++++|++|+|+++ +++|+|+||++++|++++|+|++|||||||+++|+|.++|.+|+|.++|. ++
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 7999889987999--84142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EEECCCCCCCCCHHHHHHCCCC--CCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9904676888858899733998--99422999999843299997434688631356988666689999999999812998
Q 000463 712 YVAQTSWIQNGTIEENILFGLP--MNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCD 789 (1479)
Q Consensus 712 yv~Q~~wi~~~Ti~eNIlfg~~--~~~~~y~~v~~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LARAly~~~~ 789 (1479)
||+|+|+++++||+||+.++.. .+.+...++.+.+.+...+..+|+|.+|.+|++|.+|||||||||+||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHH
Q ss_conf 9998076678896569999999995631996999980487610128889999397798914857897117646899998
Q 000463 790 IYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRYNALLNSGMDFGALVAA 868 (1479)
Q Consensus 790 i~lLDdp~salD~~~~~~i~~~~~~~~l~~kTvilvTh~~~~l~~~D~i~vl~~G~i~~~G~~~el~~~~~~f~~l~~~ 868 (1479)
|++||||||+||+.++..+++. +..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++||++.++.|.++++.
T Consensus 160 ililDEpts~LD~~~~~~i~~~-l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~ 237 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKA-LDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHH-HHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHC
T ss_pred EEEECCCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHH
T ss_conf 9996588655698899999887-88871799899997879999849999999899999999999998689699999999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=375.75 Aligned_cols=198 Identities=25% Similarity=0.392 Sum_probs=183.8
Q ss_pred CCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 73179995355635999951221138983892999997999988899999850578986289996973699895666100
Q 000463 1265 HGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSR 1344 (1479)
Q Consensus 1265 ~g~I~~~nvs~~Y~~~~~~vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1344 (1479)
.+.|.|+|+++.+ .+||+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+|| +
T Consensus 36 ~~~i~~~~~~~~g----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 36 ENNVSFSHLCLVG----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ----CHHHHHHTT----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CCCEEEEECCCCC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------E
T ss_conf 8967999769899----7677375999859999999989998299999999579747882899999-------------9
Q ss_pred EEEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 17873766546665766059999999999999999849538997194875300018999889059999999998616997
Q 000463 1345 FGIIPQEPVLFEGTVRSNIDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSR 1424 (1479)
Q Consensus 1345 i~iIpQdp~LF~GTIR~NLdp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~LARALLr~~~ 1424 (1479)
++++||+|.+|+||||+|+.+...+++.+++++++.+++.+++..+|+++++.++++|.+||||||||++|||||+++|+
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~ 178 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99981643026760321420333456057999999977699998461233235555423779999999999999986963
Q ss_pred EEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEECCCHHHHHHCCEEEEEECCC
Q ss_conf 8998378999999859999999-998737947899715913563019799980999
Q 000463 1425 LLFMDEATASVDSQTDAEIQRI-IREEFAACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1425 ILiLDEaTsslD~~te~~Iq~~-I~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~ 1479 (1479)
||+||||||+||+.++..|.+. ++...+++|+|+|+||++.+..||||++|++|+
T Consensus 179 illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~ 234 (281)
T d1r0wa_ 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGS 234 (281)
T ss_dssp EEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTE
T ss_pred CHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCE
T ss_conf 51333855448989999999999988628999999925289998599999998999
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.3e-41 Score=336.32 Aligned_cols=201 Identities=26% Similarity=0.445 Sum_probs=173.8
Q ss_pred EEEEEEEEEECCCCC--CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 799953556359999--51221138983892999997999988899999850578986289996973699895666----
Q 000463 1268 VDLIDLQVRYRSNTP--LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDL---- 1341 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~--~vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L---- 1341 (1479)
|+++|++++|+.+.. .+|+|+||+|++||.+||+|+||||||||++++.|+.+|++|+|++||.|+..++.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCEEEECCCCCCCCC-CHHHHCCC------CCCCCH----HHHHHHHHHCCCHHH-HHHCCCCCCCCCCCCCCCCCCHH
Q ss_conf 1001787376654666-57660599------999999----999999998495389-97194875300018999889059
Q 000463 1342 RSRFGIIPQEPVLFEG-TVRSNIDP------IGQYSD----EEIWKSLERCQLKDV-VAAKPDKLDSLVADSGDNWSVGQ 1409 (1479)
Q Consensus 1342 R~~i~iIpQdp~LF~G-TIR~NLdp------~~~~sd----eeI~~aL~~~~L~~~-i~~lp~gLdt~v~e~G~nLSgGQ 1409 (1479)
|++|++|||+|.+|.. |+++|+.. .+..+. +++.+.++.++|.+. ....| .+|||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----------~~LSGGq 150 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----------NQLSGGQ 150 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----------GGSCHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----------HHCCHHH
T ss_conf 55577880412417686688877578887224789999999999998876242345534880-----------2389999
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHHCCEEEEEECCC
Q ss_conf 999999998616997899837899999985999999999873--7947899715913563019799980999
Q 000463 1410 RQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMDCDRVIVVDAGL 1479 (1479)
Q Consensus 1410 rQll~LARALLr~~~ILiLDEaTsslD~~te~~Iq~~I~~~~--~~~TvI~IAHRl~ti~~~DrIlVLd~G~ 1479 (1479)
|||++|||||..+|+||+||||||+||+.+...|++.|++.. .++|+|+|+|+++....||||++|++|+
T Consensus 151 kQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~ 222 (230)
T d1l2ta_ 151 QQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGE 222 (230)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTE
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCE
T ss_conf 999998756522788899468765469899999999999999843999999878889998699899998999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=3.8e-41 Score=336.77 Aligned_cols=196 Identities=21% Similarity=0.431 Sum_probs=176.3
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 79995355635999951221138983892999997999988899999850578986289996973699895666100178
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
|+++|++.+|.. .+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+++++.. |+++++
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCEE
T ss_conf 899989999499---788433789879989999989998299999999647688878899956734652165--740561
Q ss_pred ECCCCCCCCC-CHHHHCCC----CCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 7376654666-57660599----999999999999998495389971948753000189998890599999999986169
Q 000463 1348 IPQEPVLFEG-TVRSNIDP----IGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKH 1422 (1479)
Q Consensus 1348 IpQdp~LF~G-TIR~NLdp----~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~LARALLr~ 1422 (1479)
|||++.+|.. |+++|+.. .+.-.++++.++++.+++.++.+..| ..||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTSC
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCCH-----------HHCCHHHHCCHHHHHHHHCC
T ss_conf 5121111746657788888776405538999999999825655575895-----------54799984014030434436
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCC
Q ss_conf 97899837899999985999999999873--79478997159135630-19799980999
Q 000463 1423 SRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1423 ~~ILiLDEaTsslD~~te~~Iq~~I~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~ 1479 (1479)
|+||+|||||++||+.+...|++.|++.. .+.|+|+|+|+++.+.. ||||++|++|+
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~ 205 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGK 205 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSC
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCE
T ss_conf 771443478767998999999999999986479689997499999999699999997999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=6.9e-41 Score=334.72 Aligned_cols=199 Identities=25% Similarity=0.383 Sum_probs=175.7
Q ss_pred CCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 31799953556359999512211389838929999979999888999998505789862899969736998956661001
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRF 1345 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1345 (1479)
..|+++|++.+|.+ ..+|+||||+|++||.+||+|+||||||||++++.|+++|++|+|.+||.|++..+.+ |+++
T Consensus 5 ~~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 5 VEVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred CEEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEE
T ss_conf 74999879999999--9998130678879989999999998299999999758999878799916413547700--0158
Q ss_pred EEECCCCCCCCC-CHHHHCCCCC---CCCH----HHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 787376654666-5766059999---9999----9999999984953899719487530001899988905999999999
Q 000463 1346 GIIPQEPVLFEG-TVRSNIDPIG---QYSD----EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGR 1417 (1479)
Q Consensus 1346 ~iIpQdp~LF~G-TIR~NLdp~~---~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~LAR 1417 (1479)
++|||+|.+|.. |+++|+.... ..+. +.+.++++.++|.++.+..| ..||||||||++|||
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSGGq~QRvaiAr 149 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVAR 149 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHH
T ss_pred EEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCH-----------HHCCHHHHHHHHHHH
T ss_conf 998003353422209999999998739999999999999998759855660995-----------469999988999976
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCC
Q ss_conf 8616997899837899999985999999999873--79478997159135630-19799980999
Q 000463 1418 VMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1418 ALLr~~~ILiLDEaTsslD~~te~~Iq~~I~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~ 1479 (1479)
||..+|+||+|||||++||+.+...|++.|++.. .++|+|+|||+++.+.. ||||++|++|+
T Consensus 150 aL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~ 214 (239)
T d1v43a3 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQ 214 (239)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 64049982430688666898999899999999987319807999489999998699999998999
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.7e-41 Score=339.55 Aligned_cols=202 Identities=22% Similarity=0.382 Sum_probs=178.3
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHHC
Q ss_conf 17999535563599995122113898389299999799998889999985057898628999697369989---566610
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG---LHDLRS 1343 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---l~~LR~ 1343 (1479)
.|+++|++.+|+.+...+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+...+ ....|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CEEEECCCCCCCCC-CHHHHCCCC---CCCC----HHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 01787376654666-576605999---9999----999999999849538997194875300018999889059999999
Q 000463 1344 RFGIIPQEPVLFEG-TVRSNIDPI---GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCL 1415 (1479)
Q Consensus 1344 ~i~iIpQdp~LF~G-TIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~L 1415 (1479)
++++|||+|.||+. |+++|+... ...+ ++.+.++++.++|.++....|. .||||||||++|
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----------~LSGGqkQRvai 151 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR-----------ELSGAQQQRVAL 151 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----------GSCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCHH-----------HCCHHHHHHHHH
T ss_conf 514773043346666577776655676137999999999999866591766648954-----------599999858998
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCHHHHHH-CCEEEEEECCC
Q ss_conf 9986169978998378999999859999999998737--9478997159135630-19799980999
Q 000463 1416 GRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1416 ARALLr~~~ILiLDEaTsslD~~te~~Iq~~I~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~ 1479 (1479)
||||..+|+||++||||++||+.+...|++.|++..+ +.|+|+|+|+++.+.. ||||++|++|+
T Consensus 152 ARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~ 218 (242)
T d1oxxk2 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGK 218 (242)
T ss_dssp HHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 7577604661454478667998998899899999986359879999799999999699999998999
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.4e-41 Score=334.49 Aligned_cols=197 Identities=26% Similarity=0.382 Sum_probs=175.7
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 79995355635999951221138983892999997999988899999850578986289996973699895666100178
Q 000463 1268 VDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGI 1347 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~~vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1347 (1479)
|+++|++++|.+ ..+|+||||+|++||.+||+||||||||||++++.|+.+|++|+|.+||.|+++.+. .|++|++
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGM 76 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEE
T ss_pred CEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEEE
T ss_conf 999999999899--999811177886998999998999829999999965878888889999997788864--4432223
Q ss_pred ECCCCCCCCC-CHHHHCCCCCC---C----CHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 7376654666-57660599999---9----99999999998495389971948753000189998890599999999986
Q 000463 1348 IPQEPVLFEG-TVRSNIDPIGQ---Y----SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVM 1419 (1479)
Q Consensus 1348 IpQdp~LF~G-TIR~NLdp~~~---~----sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~LARAL 1419 (1479)
|||+|.+|.. |+++|+..... . .++.+.++++.+++.++.+..|. .||||||||++|||||
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~-----------~LSGGqkQRvaiAraL 145 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHH
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHH-----------HCCHHHHHHHHHHHHH
T ss_conf 43342026433378897899987599889999999999975788656648965-----------6999999999999997
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCC
Q ss_conf 16997899837899999985999999999873--79478997159135630-19799980999
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTsslD~~te~~Iq~~I~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~ 1479 (1479)
+.+|++|+|||||++||+.+...|++.|++.. .+.|+|+|+|+++.+.. ||||++|++|+
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~ 208 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 208 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 039988997588878898899899999999987429879999489999999699999997999
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.4e-41 Score=334.49 Aligned_cols=201 Identities=28% Similarity=0.460 Sum_probs=177.4
Q ss_pred EEEEEEEEEECCCCC--CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 799953556359999--5122113898389299999799998889999985057898628999697369989566---61
Q 000463 1268 VDLIDLQVRYRSNTP--LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD---LR 1342 (1479)
Q Consensus 1268 I~~~nvs~~Y~~~~~--~vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR 1342 (1479)
|+++|++..|+.+.. .||+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+...+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCEEEECCCCCCCCC-CHHHHCCC----CC---CCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 001787376654666-57660599----99---99999999999984953899719487530001899988905999999
Q 000463 1343 SRFGIIPQEPVLFEG-TVRSNIDP----IG---QYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLC 1414 (1479)
Q Consensus 1343 ~~i~iIpQdp~LF~G-TIR~NLdp----~~---~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~ 1414 (1479)
+++++|||+|.+|.. |+++|+.. .+ +..++.+.+++++++|.+.....|. .||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~-----------~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS-----------NLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBS-----------CCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCHH-----------HCCHHHHHHHH
T ss_conf 1664302252227996499999999998499989999999999997699035548943-----------49999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCHHHHHH-CCEEEEEECCC
Q ss_conf 99986169978998378999999859999999998737--9478997159135630-19799980999
Q 000463 1415 LGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1415 LARALLr~~~ILiLDEaTsslD~~te~~Iq~~I~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~ 1479 (1479)
|||||..+|++|++||||++||+.+...|++.|++..+ +.|+|+|+|++..+.. ||||++|++|+
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~ 218 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE 218 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTE
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCE
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1e-40 Score=333.38 Aligned_cols=200 Identities=25% Similarity=0.381 Sum_probs=174.7
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf 17999535563599995122113898389299999799998889999985057898628999697369989566----61
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHD----LR 1342 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~----LR 1342 (1479)
.|+++|++.+|.+ ..+|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+....... .|
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 1899869999899--99985606688699899999999980999999996487889898999999803566444245322
Q ss_pred CCEEEECCCCCCCCC-CHHHHCCCC---CCCC----HHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 001787376654666-576605999---9999----99999999984953899719487530001899988905999999
Q 000463 1343 SRFGIIPQEPVLFEG-TVRSNIDPI---GQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLC 1414 (1479)
Q Consensus 1343 ~~i~iIpQdp~LF~G-TIR~NLdp~---~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~ 1414 (1479)
+++++|||+|.||+. |+++|+... ...+ ++.+.++++.+++.++....| ..||||||||++
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----------~~LSGGqkQRv~ 149 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQRVA 149 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCH-----------HHCCHHHHHHHH
T ss_conf 551200221222310116676330687729998999999999998759966762993-----------349999999999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCHHHHHH-CCEEEEEECCC
Q ss_conf 99986169978998378999999859999999998737--9478997159135630-19799980999
Q 000463 1415 LGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1415 LARALLr~~~ILiLDEaTsslD~~te~~Iq~~I~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~ 1479 (1479)
|||||+.+|+||+|||||++||+.+...|++.|++..+ +.|+|+|+|+++.+.. ||||++|++|+
T Consensus 150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~ 217 (240)
T d1g2912 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGV 217 (240)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCE
T ss_conf 99998269988982588765698999899999999986369889999599999999699999998999
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=7.4e-40 Score=326.58 Aligned_cols=200 Identities=30% Similarity=0.464 Sum_probs=171.3
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--------
Q ss_conf 179995355635999951221138983892999997999988899999850578986289996973699895--------
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGL-------- 1338 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l-------- 1338 (1479)
.++++|++.+|.. ..||+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+.
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 6999978999899--99881506688699799999899982999999997476678997799999933677520000235
Q ss_pred -----HHHHCCEEEECCCCCCCCC-CHHHHCCC----CCCCC----HHHHHHHHHHCCCHHHHHH-CCCCCCCCCCCCCC
Q ss_conf -----6661001787376654666-57660599----99999----9999999998495389971-94875300018999
Q 000463 1339 -----HDLRSRFGIIPQEPVLFEG-TVRSNIDP----IGQYS----DEEIWKSLERCQLKDVVAA-KPDKLDSLVADSGD 1403 (1479)
Q Consensus 1339 -----~~LR~~i~iIpQdp~LF~G-TIR~NLdp----~~~~s----deeI~~aL~~~~L~~~i~~-lp~gLdt~v~e~G~ 1403 (1479)
...|+++++|||+|.+|.. |+++|+.. ....+ ++.+.++++++++.+.... .|.
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~----------- 148 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPV----------- 148 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGG-----------
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCC-----------
T ss_conf 176799974544899833231411010213656578762999899999999999982995244306822-----------
Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-CCEEEEEECCC
Q ss_conf 889059999999998616997899837899999985999999999873-79478997159135630-19799980999
Q 000463 1404 NWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1404 nLSgGQrQll~LARALLr~~~ILiLDEaTsslD~~te~~Iq~~I~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~ 1479 (1479)
+|||||+||++|||||..+|++|+|||||++||+.+...|++.|++.. +++|+|+|+|+++.+.. ||||+||++|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~ 226 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 226 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 056778889899999843998788524555688788889987655410368833899489999998699999997999
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.3e-39 Score=321.50 Aligned_cols=200 Identities=26% Similarity=0.341 Sum_probs=169.8
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC-E
Q ss_conf 179995355635999951221138983892999997999988899999850578986289996973699895666100-1
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSR-F 1345 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~-i 1345 (1479)
-++++|++.+|.. ..||+||||++++||.+||+|++|||||||+++|.|++.|++|+|.+||.|+...+.++.+++ +
T Consensus 4 iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 6999778999799--68871217998899799999999984999999997797688737999999664056999998338
Q ss_pred EEECCCCCCCCC-CHHHHCCCCC----------------CCCH----HHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 787376654666-5766059999----------------9999----999999998495389971948753000189998
Q 000463 1346 GIIPQEPVLFEG-TVRSNIDPIG----------------QYSD----EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDN 1404 (1479)
Q Consensus 1346 ~iIpQdp~LF~G-TIR~NLdp~~----------------~~sd----eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1404 (1479)
+++||+|.+|.. |+++|+.... ...+ ++..++++..++.+. .|..+ .+
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~ 150 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-------YDRKA----GE 150 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-------TTSBG----GG
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHH-------CCCCH----HH
T ss_conf 72577642478874232143013330345045665421353289999999999876196302-------05953----56
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-CCEEEEEECCC
Q ss_conf 89059999999998616997899837899999985999999999873-79478997159135630-19799980999
Q 000463 1405 WSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1405 LSgGQrQll~LARALLr~~~ILiLDEaTsslD~~te~~Iq~~I~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~ 1479 (1479)
||||||||++|||||..+|++|+|||||++||+.+...|++.|++.. +++|||+|+|+++.+.. ||||+||++|+
T Consensus 151 LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~ 227 (254)
T d1g6ha_ 151 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQ 227 (254)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 99188889999999975927232439765699999999999999999789989999476999998699999996998
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6e-39 Score=319.43 Aligned_cols=200 Identities=26% Similarity=0.458 Sum_probs=173.2
Q ss_pred CCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 31799953556359999512211389838929999979999888999998505789862899969736998956661001
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRF 1345 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1345 (1479)
|.|+++|++.+|.. ..||+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.++|.|+.+ ..+.+|+++
T Consensus 1 gaI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CCEEEEEEEEEECC--EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHHHHE
T ss_conf 97899958999999--999806256884897999999999999999999966988788879998672446-839887218
Q ss_pred EEECCCCCCCCC-CHHHHCCCC---CCCCHHH----HHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 787376654666-576605999---9999999----99999984953899719487530001899988905999999999
Q 000463 1346 GIIPQEPVLFEG-TVRSNIDPI---GQYSDEE----IWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGR 1417 (1479)
Q Consensus 1346 ~iIpQdp~LF~G-TIR~NLdp~---~~~sdee----I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~LAR 1417 (1479)
+++||++.+|.. |+++|+... ...++++ +.++++.+++.+.. +..+ .+||+|||||++|||
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI-------KDRV----STYSKGMVRKLLIAR 146 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGG-------GSBG----GGCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-------HHHH----HHCCHHHHHHHHHHH
T ss_conf 67500154687866778889899861799899999999999867978888-------5045----337998989999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-CCEEEEEECCC
Q ss_conf 8616997899837899999985999999999873-79478997159135630-19799980999
Q 000463 1418 VMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1418 ALLr~~~ILiLDEaTsslD~~te~~Iq~~I~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~ 1479 (1479)
||+.+|+||+|||||++||+.+...|++.|++.. ++.|||+++|+++.++. ||||++|++|+
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~ 210 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGT 210 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTE
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 9865999887337988979899999999999999659989999598999999699999998999
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.2e-38 Score=316.99 Aligned_cols=206 Identities=25% Similarity=0.411 Sum_probs=168.1
Q ss_pred CCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-C
Q ss_conf 317999535563599995122113898389299999799998889999985057898628999697369989566610-0
Q 000463 1266 GNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRS-R 1344 (1479)
Q Consensus 1266 g~I~~~nvs~~Y~~~~~~vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~-~ 1344 (1479)
--++++|++.+|.. ..+|+||||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.|+...+.+..++ .
T Consensus 5 ~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 07999618999899--8888302578889979999999998599999999678888803898424434466088888742
Q ss_pred EEEECCCCCCCCC-CHHHHCCCC--CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 1787376654666-576605999--9999999999999849538997194875300018999889059999999998616
Q 000463 1345 FGIIPQEPVLFEG-TVRSNIDPI--GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLK 1421 (1479)
Q Consensus 1345 i~iIpQdp~LF~G-TIR~NLdp~--~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~LARALLr 1421 (1479)
++++||++.+|+. |+++|+... .....+++.+.++..- +....+.+..+.. ..+||||||||++|||||+.
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~----~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF--SLFPRLKERLKQL----GGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHH--HHCHHHHTTTTSB----SSSSCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHCHHHHHHCC----HHHCCHHHHHHHHHHHHHHH
T ss_conf 35567655457763699999988873278889999999999--8741768887585----43389999999999999982
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-CCEEEEEECCC
Q ss_conf 997899837899999985999999999873-79478997159135630-19799980999
Q 000463 1422 HSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1422 ~~~ILiLDEaTsslD~~te~~Iq~~I~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~ 1479 (1479)
+|++|+|||||++||+.+...|++.|++.. +++|+|+|+|+++.+.. ||||+||++|+
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~ 216 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQ 216 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 998740039886799999999999999999689989999588999999699999998999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.6e-37 Score=304.57 Aligned_cols=207 Identities=26% Similarity=0.338 Sum_probs=172.2
Q ss_pred CCEEEEEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------EE
Q ss_conf 3199972389806999964310014997389599999189997689999984684467748998795-----------89
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-----------TA 711 (1479)
Q Consensus 643 ~~i~~~~~~f~w~~~~~~~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~-----------ia 711 (1479)
..|+++|++++|+ +..+|+|+||++++||+++++|++|||||||+++|.|.++|++|+|.++|. ++
T Consensus 5 ~~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig 81 (239)
T d1v43a3 5 VEVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 81 (239)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEE
T ss_pred CEEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEEE
T ss_conf 7499987999999---9999813067887998999999999829999999975899987879991641354770001589
Q ss_pred EEECCCCCC-CCCHHHHHHCCCCC---CHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 990467688-88588997339989---94229999998432999974346886313569886666899999999998129
Q 000463 712 YVAQTSWIQ-NGTIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQD 787 (1479)
Q Consensus 712 yv~Q~~wi~-~~Ti~eNIlfg~~~---~~~~y~~v~~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LARAly~~ 787 (1479)
||+|+|-++ +.|++||+.|+... +++..++.+ .+-++.+ |...........||||||||++||||+..+
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~~ 154 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV-----RWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVVE 154 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHH-----HHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHC--CCHHHHCCCHHHCCHHHHHHHHHHHHHCCC
T ss_conf 980033534222099999999987399999999999-----9999875--985566099546999998899997664049
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 9899980766788965699999999956319-9699998048761012-8889999397798914857897117
Q 000463 788 CDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNSG 859 (1479)
Q Consensus 788 ~~i~lLDdp~salD~~~~~~i~~~~~~~~l~-~kTvilvTh~~~~l~~-~D~i~vl~~G~i~~~G~~~el~~~~ 859 (1479)
|++++|||||++||+.+...+.+.......+ |+|+|+|||+++.... ||+|++|++|+|++.|+.+|+.++.
T Consensus 155 P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 155 PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 98243068866689899989999999998731980799948999999869999999899999985999998689
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-37 Score=307.27 Aligned_cols=200 Identities=30% Similarity=0.425 Sum_probs=168.7
Q ss_pred EEEEEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------EEEEE
Q ss_conf 9997238980699996431001499738959999918999768999998468446774899879-----------58999
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG-----------TTAYV 713 (1479)
Q Consensus 645 i~~~~~~f~w~~~~~~~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g-----------~iayv 713 (1479)
|+++|++++|+ +..+|+|+||++++||+++++||+|||||||+++|.|..+|++|+|.++| .++||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v 77 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 77 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEE
T ss_pred CEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEE
T ss_conf 99999999989---999981117788699899999899982999999996587888888999999778886444322234
Q ss_pred ECCCCCC-CCCHHHHHHCCCCCC---H-HH---HHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 0467688-885889973399899---4-22---99999984329999743468863135698866668999999999981
Q 000463 714 AQTSWIQ-NGTIEENILFGLPMN---R-AK---YGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVY 785 (1479)
Q Consensus 714 ~Q~~wi~-~~Ti~eNIlfg~~~~---~-~~---y~~v~~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LARAly 785 (1479)
+|+|-++ +.|++||+.|+.... + +. ..++++...|.+ .......+||||||||++||||+.
T Consensus 78 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-----------~~~~~~~~LSGGqkQRvaiAraL~ 146 (232)
T d2awna2 78 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-----------LLDRKPKALSGGQRQRVAIGRTLV 146 (232)
T ss_dssp CSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH-----------HHHCCHHHCCHHHHHHHHHHHHHH
T ss_conf 334202643337889789998759988999999999997578865-----------664896569999999999999970
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 2998999807667889656999999999563-199699998048761012-888999939779891485789711
Q 000463 786 QDCDIYLLDDVFSAVDAHTGSDIFKECVRGA-LKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 786 ~~~~i~lLDdp~salD~~~~~~i~~~~~~~~-l~~kTvilvTh~~~~l~~-~D~i~vl~~G~i~~~G~~~el~~~ 858 (1479)
.+|++++|||||++||+.+..++.+...... ..|+|+|++||+++.... ||+|++|++|+|++.|+.+|+++.
T Consensus 147 ~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 147 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 399889975888788988998999999999874298799994899999996999999979999998089999738
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=7.9e-37 Score=302.69 Aligned_cols=207 Identities=26% Similarity=0.323 Sum_probs=170.0
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 19997238980699996431001499738959999918999768999998468446774899879---------------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------------- 708 (1479)
Q Consensus 644 ~i~~~~~~f~w~~~~~~~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g--------------- 708 (1479)
.|+++|++++|+.. ...+|+|+||++++||+++++|++|||||||+++|.|..+|++|+|.++|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred -EEEEEECCCCCC-CCCHHHHHHCCCCC---CHHHH-HHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf -589990467688-88588997339989---94229-9999984329999743468863135698866668999999999
Q 000463 709 -TTAYVAQTSWIQ-NGTIEENILFGLPM---NRAKY-GEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLAR 782 (1479)
Q Consensus 709 -~iayv~Q~~wi~-~~Ti~eNIlfg~~~---~~~~y-~~v~~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LAR 782 (1479)
.++||+|+|-++ +.|++|||.|+... +++.. +++.+ -++.+ |...........||||||||++|||
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~------~l~~~--gL~~~~~~~p~~LSGGqkQRvaiAR 153 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE------VAKIL--DIHHVLNHFPRELSGAQQQRVALAR 153 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHH------HHHHT--TCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH------HHHHC--CHHHHHHCCHHHCCHHHHHHHHHHH
T ss_conf 451477304334666657777665567613799999999999------98665--9176664895459999985899875
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 98129989998076678896569999999995631-9969999804876101-28889999397798914857897117
Q 000463 783 AVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLNSG 859 (1479)
Q Consensus 783 Aly~~~~i~lLDdp~salD~~~~~~i~~~~~~~~l-~~kTvilvTh~~~~l~-~~D~i~vl~~G~i~~~G~~~el~~~~ 859 (1479)
|+..+|+++|+||||++||+.+...+.+....... .++|+|+|||+++.+. .||+|++|++|+|++.|+++|+.+..
T Consensus 154 aL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P 232 (242)
T d1oxxk2 154 ALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232 (242)
T ss_dssp HHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 7760466145447866799899889989999998635987999979999999969999999899999986999998689
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=9.1e-37 Score=302.20 Aligned_cols=204 Identities=26% Similarity=0.367 Sum_probs=168.6
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 19997238980699996431001499738959999918999768999998468446774899879---------------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------------- 708 (1479)
Q Consensus 644 ~i~~~~~~f~w~~~~~~~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g--------------- 708 (1479)
.|+++|++++|+ +..+|+|+||++++||+++++|++|||||||+++|.|.++|++|+|.++|
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 189986999989---99998560668869989999999998099999999648788989899999980356644424532
Q ss_pred --EEEEEECCCCCC-CCCHHHHHHCCCC---CCHH-HHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf --589990467688-8858899733998---9942-29999998432999974346886313569886666899999999
Q 000463 709 --TTAYVAQTSWIQ-NGTIEENILFGLP---MNRA-KYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLA 781 (1479)
Q Consensus 709 --~iayv~Q~~wi~-~~Ti~eNIlfg~~---~~~~-~y~~v~~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LA 781 (1479)
.++||+|+|-++ +.|++||+.|+.. .+.+ ..+++.+ +.+.+... .........||||||||++||
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~---~l~~~~l~-----~~~~~~p~~LSGGqkQRv~IA 151 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVRE---VAELLGLT-----ELLNRKPRELSGGQRQRVALG 151 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHH---HHHHHTCG-----GGTTCCGGGSCHHHHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH---HHHHCCCH-----HHHCCCHHHCCHHHHHHHHHH
T ss_conf 2551200221222310116676330687729998999999999---99875996-----676299334999999999999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 9981299899980766788965699999999956319-9699998048761012-888999939779891485789711
Q 000463 782 RAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 782 RAly~~~~i~lLDdp~salD~~~~~~i~~~~~~~~l~-~kTvilvTh~~~~l~~-~D~i~vl~~G~i~~~G~~~el~~~ 858 (1479)
||+..+|++++|||||++||+.+...+.+.......+ |.|+|++||+++.+.. +|+|++|++|+|++.|+.+|++++
T Consensus 152 raL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~ 230 (240)
T d1g2912 152 RAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (240)
T ss_dssp HHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 9982699889825887656989998999999999863698899995999999996999999989999998599999828
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.2e-37 Score=307.08 Aligned_cols=179 Identities=26% Similarity=0.442 Sum_probs=137.8
Q ss_pred EEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCC-CHHHHCCC
Q ss_conf 11389838929999979999888999998505789862899969736998956661001787376654666-57660599
Q 000463 1287 GITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEG-TVRSNIDP 1365 (1479)
Q Consensus 1287 ~isl~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~G-TIR~NLdp 1365 (1479)
|+||+++ +|.+||+||+|||||||+++|.|+.+|++|+|.+||.|+++++.. |++|++|||+|.+|+. ||+||+..
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-979999979998099999999739998962899999998869989--9285225231443522015576665
Q ss_pred -CCCCC----HHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH
Q ss_conf -99999----9999999998495389971948753000189998890599999999986169978998378999999859
Q 000463 1366 -IGQYS----DEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTD 1440 (1479)
Q Consensus 1366 -~~~~s----deeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~LARALLr~~~ILiLDEaTsslD~~te 1440 (1479)
....+ ++.+.++++.+++.++....|. .||||||||++|||||+.+|+||+||||||+||+.+.
T Consensus 94 ~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~-----------~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~ 162 (240)
T d2onka1 94 GLRNVERVERDRRVREMAEKLGIAHLLDRKPA-----------RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTK 162 (240)
T ss_dssp TCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGG-----------GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHH-----------HCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHH
T ss_conf 32336778899999999986383756657944-----------4899998999998777516770675286555887999
Q ss_pred HHHHHHHHHHCC--CCEEEEECCCHHHHHH-CCEEEEEECCC
Q ss_conf 999999998737--9478997159135630-19799980999
Q 000463 1441 AEIQRIIREEFA--ACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1441 ~~Iq~~I~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~ 1479 (1479)
..+++.|++..+ +.|+|+|+|+++.+.. ||||++|++|+
T Consensus 163 ~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ 204 (240)
T d2onka1 163 GVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGR 204 (240)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 999999999987439769998189999999699999998999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=8.2e-37 Score=302.59 Aligned_cols=199 Identities=26% Similarity=0.396 Sum_probs=168.1
Q ss_pred EEEEEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------EEEE
Q ss_conf 99972389806999964310014997389599999189997689999984684467748998795-----------8999
Q 000463 645 VEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-----------TAYV 713 (1479)
Q Consensus 645 i~~~~~~f~w~~~~~~~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~-----------iayv 713 (1479)
|+++|++++|+. .+|+|+||++++||+++++|++|||||||+++|.|.++|++|+|.++|. ++|+
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v 77 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEEE
T ss_conf 899989999499----7884337898799899999899982999999996476888788999567346521657405615
Q ss_pred ECCCCCC-CCCHHHHHHCCCCC----CHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 0467688-88588997339989----942299999984329999743468863135698866668999999999981299
Q 000463 714 AQTSWIQ-NGTIEENILFGLPM----NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDC 788 (1479)
Q Consensus 714 ~Q~~wi~-~~Ti~eNIlfg~~~----~~~~y~~v~~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LARAly~~~ 788 (1479)
+|++-++ +.|++||+.|+... ++++..++++... ...........||||||||++||||+..+|
T Consensus 78 ~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSGG~~QRvaiAraL~~~P 146 (229)
T d3d31a2 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK-----------IEHLLDRNPLTLSGGEQQRVALARALVTNP 146 (229)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTT-----------CTTTTTSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC-----------CHHHHHCCHHHCCHHHHCCHHHHHHHHCCC
T ss_conf 121111746657788888776405538999999999825-----------655575895547999840140304344367
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 89998076678896569999999995631-99699998048761012-888999939779891485789711
Q 000463 789 DIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 789 ~i~lLDdp~salD~~~~~~i~~~~~~~~l-~~kTvilvTh~~~~l~~-~D~i~vl~~G~i~~~G~~~el~~~ 858 (1479)
+++||||||++||+++...+.+....... .++|+|++||+++.... ||+|++|++|+|++.|+++|++++
T Consensus 147 ~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 714434787679989999999999999864796899974999999996999999979999998699999868
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-36 Score=301.87 Aligned_cols=206 Identities=24% Similarity=0.358 Sum_probs=168.2
Q ss_pred EEEEEEEEEECCCCCC-CCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 9997238980699996-4310014997389599999189997689999984684467748998795--------------
Q 000463 645 VEVRDGVFSWDDENGE-ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------- 709 (1479)
Q Consensus 645 i~~~~~~f~w~~~~~~-~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~-------------- 709 (1479)
|+++|++++|+.+... .+|+|+||++++|++++++|++|||||||+++|.|..+|++|+|.++|.
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred --EEEEECCCCCC-CCCHHHHHHCCCC---CCH-HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf --89990467688-8858899733998---994-2299999984329999743468863135698866668999999999
Q 000463 710 --TAYVAQTSWIQ-NGTIEENILFGLP---MNR-AKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLAR 782 (1479)
Q Consensus 710 --iayv~Q~~wi~-~~Ti~eNIlfg~~---~~~-~~y~~v~~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LAR 782 (1479)
++||+|++-++ ..|++|||.|+.. .++ +..+++.+ +.+.+.. ..........||||||||++|||
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~---~L~~vgL-----~~~~~~~~~~LSGG~~QRvaiAr 153 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTE---LLSLVGL-----GDKHDSYPSNLSGGQKQRVAIAR 153 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHH---HHHHHST-----TTTTSSCBSCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH---HHHHCCC-----CHHHHCCHHHCCHHHHHHHHHHH
T ss_conf 166430225222799649999999999849998999999999---9997699-----03554894349999998999864
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 981299899980766788965699999999956319-9699998048761012-888999939779891485789711
Q 000463 783 AVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALK-GKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 783 Aly~~~~i~lLDdp~salD~~~~~~i~~~~~~~~l~-~kTvilvTh~~~~l~~-~D~i~vl~~G~i~~~G~~~el~~~ 858 (1479)
|+..+|+++|+||||++||+.++..+++.......+ |+|+|++||+++.+.. ||+|++|++|+|++.|+.+|+++.
T Consensus 154 aL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~ 231 (240)
T d3dhwc1 154 ALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231 (240)
T ss_dssp HHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCS
T ss_pred HHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 010589868744655658988856799999999864697899983899999986999999979999998799999728
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=9e-37 Score=302.27 Aligned_cols=201 Identities=27% Similarity=0.375 Sum_probs=162.6
Q ss_pred EEEEEEEEEECCCCC-CCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 999723898069999-64310014997389599999189997689999984684467748998795--------------
Q 000463 645 VEVRDGVFSWDDENG-EECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------- 709 (1479)
Q Consensus 645 i~~~~~~f~w~~~~~-~~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~-------------- 709 (1479)
|+++|++++|+.... ..+|+|+||++++||+++|+|++|||||||+++|.|..+|++|+|.++|.
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred ---EEEEECCCCC-CCCCHHHHHHCCCCC------CH-HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf ---8999046768-888588997339989------94-229999998432999974346886313569886666899999
Q 000463 710 ---TAYVAQTSWI-QNGTIEENILFGLPM------NR-AKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRI 778 (1479)
Q Consensus 710 ---iayv~Q~~wi-~~~Ti~eNIlfg~~~------~~-~~y~~v~~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi 778 (1479)
++||+|+|-+ ++.|++||+.++..+ +. ++.+++.+ -++.+.-.+ ........+|||||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~L~~-~~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE------CLKMAELEE-RFANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHH------HHHHTTCCG-GGTTCCGGGSCHHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH------HHHHHCHHH-HHHCCCHHHCCHHHHHHH
T ss_conf 5557788041241768668887757888722478999999999999------887624234-553488023899999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCH
Q ss_conf 999998129989998076678896569999999995631-99699998048761012888999939779891485
Q 000463 779 QLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHNVDLILVMREGMIVQSGRY 852 (1479)
Q Consensus 779 ~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~~~~~l-~~kTvilvTh~~~~l~~~D~i~vl~~G~i~~~G~~ 852 (1479)
+||||+..+|+++++|||||+||+.++..+++....-.. .|+|+|+|||+++....||+|++|++|+|++.|+.
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.5e-35 Score=292.64 Aligned_cols=206 Identities=25% Similarity=0.376 Sum_probs=168.3
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 199972389806999964310014997389599999189997689999984684467748998795--------------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------- 709 (1479)
Q Consensus 644 ~i~~~~~~f~w~~~~~~~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~-------------- 709 (1479)
.++++|++.+|+ +..+|+|+||++++||+++++|+||||||||+++|.|.++|++|+|.++|.
T Consensus 4 iL~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 699977899979---96887121799889979999999998499999999779768873799999966405699999833
Q ss_pred EEEEECCCCC-CCCCHHHHHHCCCCCCH--------------HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 8999046768-88858899733998994--------------22999999843299997434688631356988666689
Q 000463 710 TAYVAQTSWI-QNGTIEENILFGLPMNR--------------AKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQ 774 (1479)
Q Consensus 710 iayv~Q~~wi-~~~Ti~eNIlfg~~~~~--------------~~y~~v~~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQ 774 (1479)
++|++|+|-+ ++.|++||+.+|..... ++.+..-++..+ ++.+ |..........+|||||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~--~l~~~~~~~~~~LSgG~ 155 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKI---LEFL--KLSHLYDRKAGELSGGQ 155 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHH---HHHT--TCGGGTTSBGGGSCHHH
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHH---HHHC--CCCHHCCCCHHHCCCHH
T ss_conf 872577642478874232143013330345045665421353289999999999---8761--96302059535699188
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCHH
Q ss_conf 99999999981299899980766788965699999999956319969999804876101-28889999397798914857
Q 000463 775 KQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYN 853 (1479)
Q Consensus 775 kqRi~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~~~~~l~~kTvilvTh~~~~l~-~~D~i~vl~~G~i~~~G~~~ 853 (1479)
|||++||||+..+|++++||||+++||+.....+++.......+|+|+|++||+++.+. .||+|++|++|+|+..|+++
T Consensus 156 ~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~ 235 (254)
T d1g6ha_ 156 MKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 235 (254)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESH
T ss_pred HHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHH
T ss_conf 88999999997592723243976569999999999999999978998999947699999869999999699899996689
Q ss_pred HHHH
Q ss_conf 8971
Q 000463 854 ALLN 857 (1479)
Q Consensus 854 el~~ 857 (1479)
|+.+
T Consensus 236 e~~~ 239 (254)
T d1g6ha_ 236 EEIK 239 (254)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9865
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.1e-36 Score=295.70 Aligned_cols=203 Identities=27% Similarity=0.412 Sum_probs=168.3
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 199972389806999964310014997389599999189997689999984684467748998795--------------
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------- 709 (1479)
Q Consensus 644 ~i~~~~~~f~w~~~~~~~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~-------------- 709 (1479)
.++++|++++|+ +.++|+|+||++++||+++|+|++|||||||+++|.|..+|++|+|.++|.
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 699997899989---99988150668869979999989998299999999747667899779999993367752000023
Q ss_pred ------------EEEEECCCCCC-CCCHHHHHHCCC----CCCHH----HHHHHHHHHCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf ------------89990467688-885889973399----89942----2999999843299997434688631356988
Q 000463 710 ------------TAYVAQTSWIQ-NGTIEENILFGL----PMNRA----KYGEVVRVCCLEKDLEMMEYGDQTEIGERGI 768 (1479)
Q Consensus 710 ------------iayv~Q~~wi~-~~Ti~eNIlfg~----~~~~~----~y~~v~~~c~L~~dl~~l~~Gd~t~ige~g~ 768 (1479)
++||+|+|-++ +.|+.|||.++. ..++. +..+.++.+.+.+... .....
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~p~ 148 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ----------GKYPV 148 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHH----------TSCGG
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH----------CCCCC
T ss_conf 51767999745448998332314110102136565787629998999999999999829952443----------06822
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-CCEEEEEECCEEE
Q ss_conf 666689999999999812998999807667889656999999999563199699998048761012-8889999397798
Q 000463 769 NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHN-VDLILVMREGMIV 847 (1479)
Q Consensus 769 ~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~~~~~l~~kTvilvTh~~~~l~~-~D~i~vl~~G~i~ 847 (1479)
+||||||||++||||+..+|+++++||||++||+.+...+++.......+|+|+|+|||+++.+.. ||+|++|++|+|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 05677888989999984399878852455568878888998765541036883389948999999869999999799999
Q ss_pred EECCHHHHHHCC
Q ss_conf 914857897117
Q 000463 848 QSGRYNALLNSG 859 (1479)
Q Consensus 848 ~~G~~~el~~~~ 859 (1479)
+.|+.+|++++.
T Consensus 229 ~~g~~~ev~~~P 240 (258)
T d1b0ua_ 229 EEGDPEQVFGNP 240 (258)
T ss_dssp EEECHHHHHHSC
T ss_pred EECCHHHHHHCC
T ss_conf 984999998389
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.4e-35 Score=292.97 Aligned_cols=208 Identities=24% Similarity=0.368 Sum_probs=169.8
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------
Q ss_conf 973199972389806999964310014997389599999189997689999984684467748998795-----------
Q 000463 641 DNIAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT----------- 709 (1479)
Q Consensus 641 ~~~~i~~~~~~f~w~~~~~~~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~----------- 709 (1479)
++..++++|.+++|+ +..+|+|+||++++||+++++||||||||||+++|.|.++|++|+|.++|.
T Consensus 3 sd~~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~ 79 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVIN 79 (240)
T ss_dssp CSEEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred CCEEEEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHH
T ss_conf 560799961899989---98888302578889979999999998599999999678888803898424434466088888
Q ss_pred ---EEEEECCCCCC-CCCHHHHHHCCCCC--CHHHHHHHH-HHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ---89990467688-88588997339989--942299999-984329999743468863135698866668999999999
Q 000463 710 ---TAYVAQTSWIQ-NGTIEENILFGLPM--NRAKYGEVV-RVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLAR 782 (1479)
Q Consensus 710 ---iayv~Q~~wi~-~~Ti~eNIlfg~~~--~~~~y~~v~-~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LAR 782 (1479)
++|+||++-++ +.|++||+.++... +.+..++.+ +...+...++ ........+||||||||++|||
T Consensus 80 r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~LSGG~~Qrv~iAr 152 (240)
T d1ji0a_ 80 RMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-------ERLKQLGGTLSGGEQQMLAIGR 152 (240)
T ss_dssp HTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-------TTTTSBSSSSCHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHH-------HHHHCCHHHCCHHHHHHHHHHH
T ss_conf 742355676554577636999999888732788899999999998741768-------8875854338999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 981299899980766788965699999999956319969999804876101-2888999939779891485789711
Q 000463 783 AVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLH-NVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 783 Aly~~~~i~lLDdp~salD~~~~~~i~~~~~~~~l~~kTvilvTh~~~~l~-~~D~i~vl~~G~i~~~G~~~el~~~ 858 (1479)
|+..+|++++|||||++||+....++++.......+|+|+|++||+++.+. .||+|++|++|+|++.|+++|+.+.
T Consensus 153 aL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 99829987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.5e-35 Score=288.18 Aligned_cols=205 Identities=26% Similarity=0.360 Sum_probs=170.0
Q ss_pred CCEEEEEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE------------E
Q ss_conf 3199972389806999964310014997389599999189997689999984684467748998795------------8
Q 000463 643 IAVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT------------T 710 (1479)
Q Consensus 643 ~~i~~~~~~f~w~~~~~~~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~------------i 710 (1479)
++|+++|.+.+|+ +.++|+|+||++++|+.++++|++|||||||+++|.|.++|++|+|.++|. +
T Consensus 1 gaI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CCEEEEEEEEEEC---CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHE
T ss_conf 9789995899999---9999806256884897999999999999999999966988788879998672446839887218
Q ss_pred EEEECCCCC-CCCCHHHHHHCCCCC---CHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 999046768-888588997339989---9422999999843299997434688631356988666689999999999812
Q 000463 711 AYVAQTSWI-QNGTIEENILFGLPM---NRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQ 786 (1479)
Q Consensus 711 ayv~Q~~wi-~~~Ti~eNIlfg~~~---~~~~y~~v~~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LARAly~ 786 (1479)
+|+||++.+ ++.|++||+.|...+ +....++.++ .-++.+ |......++..+||||||||++||||+.+
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~~ 150 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVE-----RATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMV 150 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHH-----HHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH-----HHHHHC--CCHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 67500154687866778889899861799899999999-----999867--97888850453379989899999999865
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 99899980766788965699999999956-3199699998048761012-888999939779891485789711
Q 000463 787 DCDIYLLDDVFSAVDAHTGSDIFKECVRG-ALKGKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 787 ~~~i~lLDdp~salD~~~~~~i~~~~~~~-~l~~kTvilvTh~~~~l~~-~D~i~vl~~G~i~~~G~~~el~~~ 858 (1479)
+|++++|||||++||+....++++ .+.. ..+|+|+|++||+++.+.. ||+|++|++|+|...|+++++.+.
T Consensus 151 ~p~illLDEPt~gLD~~~~~~i~~-~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 151 NPRLAILDEPTSGLDVLNAREVRK-ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 999887337988979899999999-9999996599899995989999996999999989999999289999865
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.6e-34 Score=284.41 Aligned_cols=190 Identities=23% Similarity=0.408 Sum_probs=161.8
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 17999535563599995122113898389299999799998889999985057898628999697369989566610017
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
.|+++|++++|. . +||+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++. ..|.+++
T Consensus 2 ~lev~~ls~~y~--~-~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~-----~~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 73 (200)
T ss_dssp EEEEEEEEEESS--S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred EEEEEEEEEEEC--C-EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHH-----HHCCCEE
T ss_conf 599998999939--9-2884208898599899999999971999999996620567788999989626-----7367089
Q ss_pred EECCCCCCCCC-CHHHHCCC-----CCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 87376654666-57660599-----9999999999999984953899719487530001899988905999999999861
Q 000463 1347 IIPQEPVLFEG-TVRSNIDP-----IGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVML 1420 (1479)
Q Consensus 1347 iIpQdp~LF~G-TIR~NLdp-----~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~LARALL 1420 (1479)
++||++.++.. |+++|+.. ....+++++.++++..++.+ ++..++ +||+|||||+++|||++
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~----~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKLG----ELSQGTIRRVQLASTLL 141 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBGG----GSCHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC--------CCCCCC----CCCCCHHHHHHHHHHHH
T ss_conf 995013578882899999999975488637999999998748856--------301268----68971888899999886
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEEC
Q ss_conf 699789983789999998599999999987379478997159135630197999809
Q 000463 1421 KHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIVVDA 1477 (1479)
Q Consensus 1421 r~~~ILiLDEaTsslD~~te~~Iq~~I~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~ 1477 (1479)
.+|++++|||||++||+++...+++.|++..++.++++|+|+- .+..||++.+|.+
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 4998999868620169999999999999998679999999916-2544161234010
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-34 Score=283.38 Aligned_cols=195 Identities=21% Similarity=0.299 Sum_probs=167.7
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 17999535563599995122113898389299999799998889999985057898628999697369989566610017
Q 000463 1267 NVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFG 1346 (1479)
Q Consensus 1267 ~I~~~nvs~~Y~~~~~~vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1346 (1479)
-++++||+.+| +|+||||+|++||.+||+|++|||||||+++|.|+. |.+|+|.++|.|+.....+.++.+.+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCCC------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 99998741571------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EECCCCCC-CCCCHHHHCCCC--CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC--
Q ss_conf 87376654-666576605999--9999999999999849538997194875300018999889059999999998616--
Q 000463 1347 IIPQEPVL-FEGTVRSNIDPI--GQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLK-- 1421 (1479)
Q Consensus 1347 iIpQdp~L-F~GTIR~NLdp~--~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~LARALLr-- 1421 (1479)
+++|+... |..++.+|+... .....+.+.++++.+++.+... . ...+||||||||+++|||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~----~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-------R----STNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTT-------S----BGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHC-------C----CHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 451213577442098876410014668999999998659876767-------6----84456998899999999998517
Q ss_pred -----CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-CCEEEEEECCC
Q ss_conf -----997899837899999985999999999873-79478997159135630-19799980999
Q 000463 1422 -----HSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMD-CDRVIVVDAGL 1479 (1479)
Q Consensus 1422 -----~~~ILiLDEaTsslD~~te~~Iq~~I~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~ 1479 (1479)
+|+|++|||||++||+.+...|.+.|++.. +++|||+++|+++.+.+ ||||++|++|+
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~ 209 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGK 209 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTE
T ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 13389988999718777789899999999999998679999999677999999799999997998
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=7.6e-34 Score=279.18 Aligned_cols=195 Identities=29% Similarity=0.417 Sum_probs=157.3
Q ss_pred CCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------EEEEECCCCCC-CCCHHHHHH
Q ss_conf 310014997389599999189997689999984684467748998795-----------89990467688-885889973
Q 000463 662 CLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-----------TAYVAQTSWIQ-NGTIEENIL 729 (1479)
Q Consensus 662 ~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~-----------iayv~Q~~wi~-~~Ti~eNIl 729 (1479)
.+ |++|+++ +++++++||+|||||||+++|.|..+|++|+|.++|. ++||+|++-++ +.||+|||.
T Consensus 15 ~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 15 RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHH
T ss_conf 99-9999749-979999979998099999999739998962899999998869989928522523144352201557666
Q ss_pred CCCC-CCHHHHH-HHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 3998-9942299-9999843299997434688631356988666689999999999812998999807667889656999
Q 000463 730 FGLP-MNRAKYG-EVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSD 807 (1479)
Q Consensus 730 fg~~-~~~~~y~-~v~~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~ 807 (1479)
||.. .++...+ ++. +-++.+ |...........||||||||++||||+..+|++++|||||++||+++...
T Consensus 93 ~~l~~~~~~~~~~~v~------~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~ 164 (240)
T d2onka1 93 YGLRNVERVERDRRVR------EMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164 (240)
T ss_dssp TTCTTSCHHHHHHHHH------HHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHH
T ss_pred HHHCCCCHHHHHHHHH------HHHHHC--CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHH
T ss_conf 5323367788999999------999863--83756657944489999899999877751677067528655588799999
Q ss_pred HHHHHHHHHCC-CCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHHCC-CCHHHHH
Q ss_conf 99999956319-9699998048761012-8889999397798914857897117-6468999
Q 000463 808 IFKECVRGALK-GKTIILVTHQVDFLHN-VDLILVMREGMIVQSGRYNALLNSG-MDFGALV 866 (1479)
Q Consensus 808 i~~~~~~~~l~-~kTvilvTh~~~~l~~-~D~i~vl~~G~i~~~G~~~el~~~~-~~f~~l~ 866 (1479)
+.+.......+ +.|+|++||+++.+.. ||+|++|++|++++.|+.+|+++.. ...+.++
T Consensus 165 i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl 226 (240)
T d2onka1 165 LMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226 (240)
T ss_dssp HHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHG
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHHHHH
T ss_conf 99999999874397699981899999996999999989999999069998329988999985
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=3.1e-31 Score=258.52 Aligned_cols=195 Identities=24% Similarity=0.392 Sum_probs=159.4
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE-------------E
Q ss_conf 199972389806999964310014997389599999189997689999984684467748998795-------------8
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGT-------------T 710 (1479)
Q Consensus 644 ~i~~~~~~f~w~~~~~~~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~-------------i 710 (1479)
.++++|++.+ ..|+|+||+|++||+++++|+||||||||+++|.|.. +.+|+|.++|. .
T Consensus 3 il~~~dv~~~-------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCT-------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCCC-------CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 9999874157-------1555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEEECCCCC-CCCCHHHHHHCCCCCC--HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-
Q ss_conf 999046768-8885889973399899--422999999843299997434688631356988666689999999999812-
Q 000463 711 AYVAQTSWI-QNGTIEENILFGLPMN--RAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQ- 786 (1479)
Q Consensus 711 ayv~Q~~wi-~~~Ti~eNIlfg~~~~--~~~y~~v~~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LARAly~- 786 (1479)
+|++|+.-. +..++.+++.++.... .++.+++++.+.+ ...++.+..+||||||||++||||+++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL-----------DDKLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTC-----------TTTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCC-----------HHHHCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 24512135774420988764100146689999999986598-----------7676768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCCCCC-CCCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf ------99899980766788965699999999956-31996999980487610-12888999939779891485789711
Q 000463 787 ------DCDIYLLDDVFSAVDAHTGSDIFKECVRG-ALKGKTIILVTHQVDFL-HNVDLILVMREGMIVQSGRYNALLNS 858 (1479)
Q Consensus 787 ------~~~i~lLDdp~salD~~~~~~i~~~~~~~-~l~~kTvilvTh~~~~l-~~~D~i~vl~~G~i~~~G~~~el~~~ 858 (1479)
+|++++||||+++||+.....+. +.+.. ..+|+|+|++||+++.+ ..||+|++|++|++++.|+.+|++..
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~-~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHH-HHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 71338998899971877778989999999-99999986799999996779999997999999979989998899998188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=6e-29 Score=240.50 Aligned_cols=182 Identities=23% Similarity=0.392 Sum_probs=141.2
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC--------EEEEEEC
Q ss_conf 19997238980699996431001499738959999918999768999998468446774899879--------5899904
Q 000463 644 AVEVRDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG--------TTAYVAQ 715 (1479)
Q Consensus 644 ~i~~~~~~f~w~~~~~~~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g--------~iayv~Q 715 (1479)
.++++|++++|+ +++|+|+||++++|++++++|+||||||||+++|.|.++|++|+|.++| .++|+||
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~ 77 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 77 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEEEEE
T ss_conf 599998999939----9288420889859989999999997199999999662056778899998962673670899950
Q ss_pred CCCCC-CCCHHHHHHC-----CCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 67688-8858899733-----99899422999999843299997434688631356988666689999999999812998
Q 000463 716 TSWIQ-NGTIEENILF-----GLPMNRAKYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCD 789 (1479)
Q Consensus 716 ~~wi~-~~Ti~eNIlf-----g~~~~~~~y~~v~~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LARAly~~~~ 789 (1479)
++.++ +.|++||+.+ |...++....+.+ +.+..- .+.++..+||||||||++||||++.+|+
T Consensus 78 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l---------~~~~~~---~~~~~~~~LSgG~~qrv~ia~al~~~~~ 145 (200)
T d1sgwa_ 78 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDAL---------ESVEVL---DLKKKLGELSQGTIRRVQLASTLLVNAE 145 (200)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHH---------HHTTCC---CTTSBGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH---------HHCCCC---CCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 1357888289999999997548863799999999---------874885---6301268689718888999998864998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 999807667889656999999999563199699998048761012888999939
Q 000463 790 IYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMRE 843 (1479)
Q Consensus 790 i~lLDdp~salD~~~~~~i~~~~~~~~l~~kTvilvTh~~~~l~~~D~i~vl~~ 843 (1479)
++|||||+++||+.+...+++....-..++.++|+.+|+ .+..||.+.+|..
T Consensus 146 llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~--~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 146 IYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE--ELSYCDVNENLHK 197 (200)
T ss_dssp EEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS--CCTTSSEEEEGGG
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC--HHHHCCHHHHEEE
T ss_conf 999868620169999999999999998679999999916--2544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.94 E-value=5.9e-21 Score=177.46 Aligned_cols=305 Identities=13% Similarity=0.064 Sum_probs=244.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998999999999999999999999999999998723999870578999999999999999999999999999999999
Q 000463 322 LLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSFYEGYYLVLILLVAKFVEVFSTHQFNFNSQKLGMLIR 401 (1479)
Q Consensus 322 l~~~~~~~~~~~~~~~l~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~rir 401 (1479)
..+.+|+.++...++.++..++....|++++.+++..-.+.. ...-+.+++.+++..++..++.....+...+.+.++.
T Consensus 10 ~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 88 (319)
T d3b60a2 10 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD-RSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVV 88 (319)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT-HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999999999999999999999998744687-7899999999999999764533546654434310001
Q ss_pred HHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998648923330679889999999999999999999-99999999999998999988877999999999999
Q 000463 402 CTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQ-LHAVWLMPLQISVALILLYNCLGASVITTVVGIIG 480 (1479)
Q Consensus 402 ~~L~~~Iy~K~L~ls~~~~~~~~~GeivNlms~D~~ri~~~~~~-~~~lw~~plqi~lal~lL~~~lG~s~l~gl~v~il 480 (1479)
..+...+|+|.++.+....+++++|++++.++.|++.+.+.... +.......+.++.++++++..-...++..++.+++
T Consensus 89 ~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~ 168 (319)
T d3b60a2 89 MTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPI 168 (319)
T ss_dssp HHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 10004777765010111102333221111121212100001111120011233445668888876520021025668999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999789999999999999999999993799999845099999999999999999999999999999999999
Q 000463 481 VMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISGNIIVMWS 560 (1479)
Q Consensus 481 ~~~~~~~~~~~~~~~q~~~m~~~D~Ri~~~~EiL~~Ik~IK~~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~~ 560 (1479)
...+.....++..+.+++..+..++..+..+|.++|++.+|.+++|+.+.++..+..++..+...+.....+........
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (319)
T d3b60a2 169 VSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL 248 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99988766668778789887644567788777624872353111010245666665313567788888777740640100
Q ss_pred HHHHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999--99999999982686678789999999999999999989999999999999999999822435
Q 000463 561 TPVLI--STLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRE 627 (1479)
Q Consensus 561 ~p~lv--~~~tF~~~~l~~~~Lta~~vFt~lalf~~L~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e 627 (1479)
...+. .+..++.+....+.+++|.+++.+.+...+..|+..++..++.+.++.+|.+|+.++|+.||
T Consensus 249 ~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~ 317 (319)
T d3b60a2 249 IASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317 (319)
T ss_dssp HHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 000023799999999998099789999999999999999999999999999999999999999966998
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.93 E-value=8.6e-21 Score=176.15 Aligned_cols=307 Identities=15% Similarity=0.131 Sum_probs=242.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998999999999999999999999999999998723999870----57--899999999999999999999999999
Q 000463 321 TLLRCFWKEVAFTAFLAIVRLCVMYVGPVLIQRFVDFTSGKSSSF----YE--GYYLVLILLVAKFVEVFSTHQFNFNSQ 394 (1479)
Q Consensus 321 al~~~~~~~~~~~~~~~l~~~~~~~~~P~lL~~li~~~~~~~~~~----~~--g~~l~~~l~~~~~~~~l~~~~~~~~~~ 394 (1479)
...+.||+.++...++.++..++....|++++.++|.+..++... .. .+.+++++++..++..++.....+...
T Consensus 7 ~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (323)
T d2hyda2 7 QFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQ 86 (323)
T ss_dssp HHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999998626774215568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999864892333067988999999999999999999-99999999999999899998887799999
Q 000463 395 KLGMLIRCTLITSLYRKGLRLSCSARQAHGVGQIVNYMAVDAQQLSDMML-QLHAVWLMPLQISVALILLYNCLGASVIT 473 (1479)
Q Consensus 395 ~~g~rir~~L~~~Iy~K~L~ls~~~~~~~~~GeivNlms~D~~ri~~~~~-~~~~lw~~plqi~lal~lL~~~lG~s~l~ 473 (1479)
+.+.+++..+...+|+|.++++....+++++|+++|.++.|++.+.+... .+...+...+.++++++.++..-...++.
T Consensus 87 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 166 (323)
T d2hyda2 87 WTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLA 166 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99985567788887665402332100012221100011113321001113454201114665334654400001468889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999978999999999999999999999379999984509999999999999999999999999999
Q 000463 474 TVVGIIGVMIFVVMGTKRNNRFQFNVMKNRDSRMKATNEMLNYMRVIKFQAWEDHFNKRILSFRESEFGWLTKFMYSISG 553 (1479)
Q Consensus 474 gl~v~il~~~~~~~~~~~~~~~q~~~m~~~D~Ri~~~~EiL~~Ik~IK~~awE~~f~~~I~~~R~~El~~l~~~~~~~a~ 553 (1479)
.++++++...+.....++..+..++..+..++..+.++|.++|++.||.+++|+.+.++..+..++..+...+.......
T Consensus 167 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~ 246 (323)
T d2hyda2 167 ALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAY 246 (323)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99988777777764123332026778989999997878875597023467641110023302231111015677652000
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999--99999999982686678789999999999999999989999999999999999999822435
Q 000463 554 NIIVMWSTPVLI--STLTFATALLFGVPLDAGSVFTTTTIFKILQEPIRNFPQSMISLSQAMISLARLDKYMLSRE 627 (1479)
Q Consensus 554 ~~~~~~~~p~lv--~~~tF~~~~l~~~~Lta~~vFt~lalf~~L~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e 627 (1479)
..........+. ....++.+....+.++.|.+++.+.++..+..|+..++..+..+.++.+|.+||.++|++|+
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 247 SFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 0111110120558999999999998499889999999999999999999999999999999999999999977999
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.92 E-value=1.6e-20 Score=174.00 Aligned_cols=312 Identities=13% Similarity=0.086 Sum_probs=246.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999823459999999999999988532110000134557778-889-4054789888878999999999999999
Q 000463 936 HVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHSM-SFN-PSLFIGVYGSTAVLSMVILVVRAYFVTH 1013 (1479)
Q Consensus 936 ~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~~-~~~-~~~~~~vy~~l~~~~~~~~~~~~~~~~~ 1013 (1479)
+.++.|++..++ ...+.+++.++..+.....++.++...|..... +.+ ...+..++.++.++..++.+++.+...+
T Consensus 5 krl~~~~~~~k~--~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (319)
T d3b60a2 5 RRLWPTIAPFKA--GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISW 82 (319)
T ss_dssp HHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999--999999999999999999999999999987446877899999999999999764533546654434
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999978148752010257013689883036674335579999999999999999999998757799999
Q 000463 1014 VGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYAWPTIFLV 1093 (1479)
Q Consensus 1014 ~~~~~s~~l~~~ll~~il~~p~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~~~ 1093 (1479)
.+.+...++++++++++++.|++||+++++|++++|+++|++.+...+...+...+...+.+++.++.+...+|.+.+++
T Consensus 83 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~ 162 (319)
T d3b60a2 83 VSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIIL 162 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 31000110004777765010111102333221111121212100001111120011233445668888876520021025
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999998732015999999540199999717288999999999997765599998576799
Q 000463 1094 IPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWL 1173 (1479)
Q Consensus 1094 ipl~~~~~~~~~~y~~~~r~l~rl~~~~~spi~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1173 (1479)
+...++...+..++.+..++..+......+...++..|.+.|+.+||+|+.|+.+.+++.+..++..+..........+.
T Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (319)
T d3b60a2 163 VVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSIS 242 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 66899999988766668778789887644567788777624872353111010245666665313567788888777740
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 9999999999999999999-986067758568999999999999999999999999999863699999850385000
Q 000463 1174 GFRLELLGSFTFCLATLFM-ILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEIPSEA 1249 (1479)
Q Consensus 1174 ~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~sveRi~~~~~~~~E~ 1249 (1479)
.....++..+...+...+. .....|.++.|.+...+.|...+..++..+......+++..+|.+|+.++.+.|+|+
T Consensus 243 ~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E~ 319 (319)
T d3b60a2 243 DPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEK 319 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 64010000002379999999999809978999999999999999999999999999999999999999996699899
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.90 E-value=2.8e-20 Score=172.15 Aligned_cols=311 Identities=13% Similarity=0.069 Sum_probs=238.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCC---CHH-----HHHHHHHHHHHHHHHHH
Q ss_conf 9999999982345999999999999998853211000013455777-88894---054-----78988887899999999
Q 000463 936 HVYKIYCTEAYGWWGVVAVLLLSVAWQGSLMAGDYWLSYETSEDHS-MSFNP---SLF-----IGVYGSTAVLSMVILVV 1006 (1479)
Q Consensus 936 ~~y~~y~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wl~~~~~~~~~-~~~~~---~~~-----~~vy~~l~~~~~~~~~~ 1006 (1479)
+.++.|+++.++ .+...+++.++..+.....++.++...|.... ..... ... ...+.+..++..++.+.
T Consensus 3 Krl~~~~k~~k~--~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (323)
T d2hyda2 3 KRYLQFVKPYKY--RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (323)
T ss_dssp HHHHHHHGGGHH--HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999--999999999999999999999999999998626774215568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999997814875201025701368988303667433557999999999999999999999875
Q 000463 1007 RAYFVTHVGLKTAQIFFSQILRSILHAPMSFFDTTPSGRILSRASTDQTNIDLFLPFFVGITVAMYITLLGIFIITCQYA 1086 (1479)
Q Consensus 1007 ~~~~~~~~~~~~s~~l~~~ll~~il~~p~~ffd~~p~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~~~v~~~~~ 1086 (1479)
+.+...+.+.+...++++++++++++.|++||+++++|++++|+++|++.++..+...+...+...+.+++.+++++..+
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 160 (323)
T d2hyda2 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD 160 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999985567788887665402332100012221100011113321001113454201114665334654400001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77999999999999999999999999999999873201599999954019999971728899999999999776559999
Q 000463 1087 WPTIFLVIPLAWANYWYRGYYLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHN 1166 (1479)
Q Consensus 1087 ~~~~~~~ipl~~~~~~~~~~y~~~~r~l~rl~~~~~spi~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~ 1166 (1479)
|.+.++.++..+++..+..++.+..++..+......++..+++.|+++|+++||+|+.|+.+.+++.+..+...+.....
T Consensus 161 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~ 240 (323)
T d2hyda2 161 VKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240 (323)
T ss_dssp TTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHH
T ss_conf 46888999988777777764123332026778989999997878875597023467641110023302231111015677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8576799999999999999999999-998606775856899999999999999999999999999986369999985038
Q 000463 1167 NGSNEWLGFRLELLGSFTFCLATLF-MILLPSSIIKPENVGLSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTEI 1245 (1479)
Q Consensus 1167 ~~~~~wl~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~sveRi~~~~~~ 1245 (1479)
.....+......++..+.......+ ......|.+++|.+...+.|...+..++..+.....++...+.+.+|+.++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~ 320 (323)
T d2hyda2 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 65200001111101205589999999999984998899999999999999999999999999999999999999999779
Q ss_pred CCC
Q ss_conf 500
Q 000463 1246 PSE 1248 (1479)
Q Consensus 1246 ~~E 1248 (1479)
|+|
T Consensus 321 e~e 323 (323)
T d2hyda2 321 DYD 323 (323)
T ss_dssp CCS
T ss_pred CCC
T ss_conf 998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.41 E-value=7.9e-15 Score=129.08 Aligned_cols=81 Identities=6% Similarity=-0.075 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCEEEEEECCEEE
Q ss_conf 6666899999999998129989998076678896569999999995631-996999980487610128889999397798
Q 000463 769 NLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL-KGKTIILVTHQVDFLHNVDLILVMREGMIV 847 (1479)
Q Consensus 769 ~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~~~~~l-~~kTvilvTh~~~~l~~~D~i~vl~~G~i~ 847 (1479)
.+++|+++|.+++++...+|+++++|||....+. .....+.+..-+. .++|+|+++|+....+.+|++..+++|++.
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~~~il~~~h~~~~~~~~~~i~~~~~~~i~ 158 (178)
T d1ye8a1 81 EELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLI 158 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH--HHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCEEEEEECCEEE
T ss_conf 6532013789999997409974230277731004--57999999987505797899997447789863659987199999
Q ss_pred EECC
Q ss_conf 9148
Q 000463 848 QSGR 851 (1479)
Q Consensus 848 ~~G~ 851 (1479)
+.++
T Consensus 159 ~v~~ 162 (178)
T d1ye8a1 159 ELTP 162 (178)
T ss_dssp ECCT
T ss_pred EECC
T ss_conf 9899
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.21 E-value=7.1e-11 Score=97.91 Aligned_cols=72 Identities=21% Similarity=0.276 Sum_probs=60.7
Q ss_pred CCCCHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHCCEEEEE
Q ss_conf 8890599999999986----16997899837899999985999999999873-794789971591356301979998
Q 000463 1404 NWSVGQRQLLCLGRVM----LKHSRLLFMDEATASVDSQTDAEIQRIIREEF-AACTIISIAHRIPTVMDCDRVIVV 1475 (1479)
Q Consensus 1404 nLSgGQrQll~LARAL----Lr~~~ILiLDEaTsslD~~te~~Iq~~I~~~~-~~~TvI~IAHRl~ti~~~DrIlVL 1475 (1479)
.+|||||.+++||-.+ ..++++++||||+++||+.+...+.+.|++.. .++-+|+|||+..+...+|+++..
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.19 E-value=2.2e-12 Score=109.72 Aligned_cols=151 Identities=8% Similarity=-0.025 Sum_probs=106.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCCCC-CCHHHHH
Q ss_conf 999997999988899999850578986289996973699895666100178737665466657660599999-9999999
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQ-YSDEEIW 1375 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~~~-~sdeeI~ 1375 (1479)
||+|+|++|||||||++.+.+.++|..|.+.+++.+....+...........++.+.++..+...+...... ...+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQY-- 79 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHH--
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443023037625--
Q ss_pred HHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CC
Q ss_conf 9999849538997194875300018999889059999999998616997899837899999985999999999873--79
Q 000463 1376 KSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIREEF--AA 1453 (1479)
Q Consensus 1376 ~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~LARALLr~~~ILiLDEaTsslD~~te~~Iq~~I~~~~--~~ 1453 (1479)
..+++|++|+.++++++.++|+++++||++...+ .. ...++.+.+.. .+
T Consensus 80 ---------------------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~-~~-~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 80 ---------------------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMEL-FS-KKFRDLVRQIMHDPN 130 (178)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG-GC-HHHHHHHHHHHTCTT
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH-HH-HHHHHHHHHHHCCCC
T ss_conf ---------------------------6653201378999999740997423027773100-45-799999998750579
Q ss_pred CEEEEECCCHHHHHHCCEEEEEECC
Q ss_conf 4789971591356301979998099
Q 000463 1454 CTIISIAHRIPTVMDCDRVIVVDAG 1478 (1479)
Q Consensus 1454 ~TvI~IAHRl~ti~~~DrIlVLd~G 1478 (1479)
+|+|.++|+......||++..+++|
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~ 155 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGA 155 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTC
T ss_pred CEEEEEECCHHHHHHHCEEEEEECC
T ss_conf 7899997447789863659987199
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.97 E-value=1.9e-08 Score=78.70 Aligned_cols=75 Identities=21% Similarity=0.320 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEE--EEC
Q ss_conf 8890599999999986----1699789983789999998599999999987379478997159135630197999--809
Q 000463 1404 NWSVGQRQLLCLGRVM----LKHSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTVMDCDRVIV--VDA 1477 (1479)
Q Consensus 1404 nLSgGQrQll~LARAL----Lr~~~ILiLDEaTsslD~~te~~Iq~~I~~~~~~~TvI~IAHRl~ti~~~DrIlV--Ld~ 1477 (1479)
.+|.|||+++.++..+ ..+++++++|||-+++++.....+.+.|++..++.-+|++||+...+..+|+++. +++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C
Q ss_conf 9
Q 000463 1478 G 1478 (1479)
Q Consensus 1478 G 1478 (1479)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.65 E-value=6.5e-07 Score=66.64 Aligned_cols=77 Identities=27% Similarity=0.370 Sum_probs=62.4
Q ss_pred CCCCHHHHHHHHHHHHHH----CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEE--E
Q ss_conf 866668999999999981----2998999807667889656999999999563199699998048761012888999--9
Q 000463 768 INLSGGQKQRIQLARAVY----QDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILV--M 841 (1479)
Q Consensus 768 ~~LSGGQkqRi~LARAly----~~~~i~lLDdp~salD~~~~~~i~~~~~~~~l~~kTvilvTh~~~~l~~~D~i~v--l 841 (1479)
..+|+|||+...++..+. ..+.+++.|||-++||+...+.+.+ .+....++.-+|++||++.++..+|+++. |
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~-~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~ 296 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENSKHTQFIVITHNKIVMEAADLLHGVTM 296 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHTTTSEEEEECCCTTGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCCEEEEEE
T ss_conf 10257776677777665565422674455432033579789999999-99985548879999898899973242899999
Q ss_pred ECCE
Q ss_conf 3977
Q 000463 842 REGM 845 (1479)
Q Consensus 842 ~~G~ 845 (1479)
++|.
T Consensus 297 ~~g~ 300 (308)
T d1e69a_ 297 VNGV 300 (308)
T ss_dssp SSSC
T ss_pred ECCE
T ss_conf 6999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.23 E-value=4.1e-06 Score=60.27 Aligned_cols=74 Identities=24% Similarity=0.296 Sum_probs=54.2
Q ss_pred CCCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEE
Q ss_conf 86666899999999998----129989998076678896569999999995631996999980487610128889999
Q 000463 768 INLSGGQKQRIQLARAV----YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDFLHNVDLILVM 841 (1479)
Q Consensus 768 ~~LSGGQkqRi~LARAl----y~~~~i~lLDdp~salD~~~~~~i~~~~~~~~l~~kTvilvTh~~~~l~~~D~i~vl 841 (1479)
..||||||.+++||-.+ +.++++++||||.++||+.....+.+.+.....++..+|++||+++.+..||+++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.89 E-value=0.00029 Score=45.74 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=21.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 3895999991899976899999846844677489
Q 000463 671 KKGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704 (1479)
Q Consensus 671 ~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v 704 (1479)
..+.-+.|+|++||||||+++++++++++..--+
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~riv 197 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERII 197 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEE
T ss_pred HHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEE
T ss_conf 8378889994035662578999865301456233
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.86 E-value=0.0075 Score=34.58 Aligned_cols=159 Identities=14% Similarity=0.191 Sum_probs=71.2
Q ss_pred CCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHH---HCCCCCCHH
Q ss_conf 43100149973895999991899976899999846844677489987958999046768888588997---339989942
Q 000463 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENI---LFGLPMNRA 737 (1479)
Q Consensus 661 ~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~~wi~~~Ti~eNI---lfg~~~~~~ 737 (1479)
+.|+++.--+.+|+++.|.|++|+|||+|+.-++--+....| .++.|++-+ .....+...+ .-|.++.+.
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g-----~~v~~~s~E--~~~~~~~~r~~~~~~~~~~~~~ 95 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-----KKVGLAMLE--ESVEETAEDLIGLHNRVRLRQS 95 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC-----CCEEEEESS--SCHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-----CCEEEEEEC--CCHHHHHHHHHHHHHCCCCHHH
T ss_conf 668887469789808999947999799999999972655336-----634576401--1113577699998645871010
Q ss_pred HH--HHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCHHHH--------H
Q ss_conf 29--999998432999974346886313569886666899999999998-129989998076678896569--------9
Q 000463 738 KY--GEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAV-YQDCDIYLLDDVFSAVDAHTG--------S 806 (1479)
Q Consensus 738 ~y--~~v~~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LARAl-y~~~~i~lLDdp~salD~~~~--------~ 806 (1479)
.. ...++.-.+....+.+..-+.-..-+........+. .-.+.+.. ..+++++++|-. ..++...+ .
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vvID~l-~~l~~~~~~~~~~~~~~ 173 (277)
T d1cr2a_ 96 DSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRL-LAKLAYMRSGLGCDVIILDHI-SIVVSASGESDERKMID 173 (277)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHHHH-HHHHHHHHHTTCCSEEEEEEE-EC----------CHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH-HHHHHHHHHCCCCCEEEECCC-CCCCCCCCCCCHHHHHH
T ss_conf 1222221456778889887403521466214331068999-998654321367625997054-21203465443067789
Q ss_pred HHHHHHHHHHC-CCCEEEEECCC
Q ss_conf 99999995631-99699998048
Q 000463 807 DIFKECVRGAL-KGKTIILVTHQ 828 (1479)
Q Consensus 807 ~i~~~~~~~~l-~~kTvilvTh~ 828 (1479)
.+...+..... .+.++++++|-
T Consensus 174 ~~~~~l~~lA~~~~i~vi~~~q~ 196 (277)
T d1cr2a_ 174 NLMTKLKGFAKSTGVVLVVICHL 196 (277)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHHHHHHHCCCCCEEECCC
T ss_conf 99999999765016552031035
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.83 E-value=4.4e-05 Score=52.14 Aligned_cols=162 Identities=10% Similarity=0.007 Sum_probs=83.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCC------CCC
Q ss_conf 29999979999888999998505789862899969736998956661001787376654666576605999------999
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPI------GQY 1369 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~------~~~ 1369 (1479)
..|.|+|+.|+|||||++.+.+.+...++.+.+.+.+........+.....-+.|+...+.....++.... ...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYV 81 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 69999889997199999999999997799799998455012221146541234330246654300103444143223110
Q ss_pred -CHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf -9999999999849538997194875300018999889059999999998616997899837899999985999999999
Q 000463 1370 -SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAEIQRIIR 1448 (1479)
Q Consensus 1370 -sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~LARALLr~~~ILiLDEaTsslD~~te~~Iq~~I~ 1448 (1479)
..+++.+. ....+...-.....+.+..+.+.....+......+.+.+.++..++++++...+..-+... .+.+.++
T Consensus 82 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 158 (189)
T d2i3ba1 82 VDLTSFEQL-ALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPL--ALVEEIR 158 (189)
T ss_dssp ECHHHHHTT-TTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCC--TTHHHHH
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH--HHHHHHH
T ss_conf 037777778-8999999988762189706861433330535999999999854686599961555775569--9999986
Q ss_pred HHCCCCEEEEECC
Q ss_conf 8737947899715
Q 000463 1449 EEFAACTIISIAH 1461 (1479)
Q Consensus 1449 ~~~~~~TvI~IAH 1461 (1479)
+ ..+.+++.++.
T Consensus 159 ~-~~~~~~~~lt~ 170 (189)
T d2i3ba1 159 N-RKDVKVFNVTK 170 (189)
T ss_dssp T-TCCSEEEECCS
T ss_pred C-CCCCEEEEECH
T ss_conf 7-89974999786
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.014 Score=32.50 Aligned_cols=125 Identities=22% Similarity=0.223 Sum_probs=68.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCHHHHH
Q ss_conf 95999991899976899999846844677489987958999046768888588997339989942299999984329999
Q 000463 673 GDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDL 752 (1479)
Q Consensus 673 g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~~wi~~~Ti~eNIlfg~~~~~~~y~~v~~~c~L~~dl 752 (1479)
|=.++++|+.|+|||||++++.|.-... ++..| ++.++.+.........
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~------------~~~~~----~~~~~~~~~~~~~~~~--------------- 49 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAI------------VTDIA----GTTRDVLREHIHIDGM--------------- 49 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSC------------CCSST----TCCCSCEEEEEEETTE---------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEE------------EECCC----CCCCCEEEEEEECCCC---------------
T ss_conf 9899998999998999999996888667------------51246----6422047653202682---------------
Q ss_pred HHCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 743468863135698--866668999999999981299899980766788965699999999956319969999804876
Q 000463 753 EMMEYGDQTEIGERG--INLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVD 830 (1479)
Q Consensus 753 ~~l~~Gd~t~ige~g--~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~~~~~l~~kTvilvTh~~~ 830 (1479)
....+...| ..-...++..+..+...+.++|+++++-....-+.....+.+...+.....++.+|+|-+..+
T Consensus 50 ------~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~D 123 (161)
T d2gj8a1 50 ------PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 123 (161)
T ss_dssp ------EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHH
T ss_pred ------EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHH
T ss_conf ------35413653212246520247899999998741332011025654203455544455542014101020465444
Q ss_pred CCCC
Q ss_conf 1012
Q 000463 831 FLHN 834 (1479)
Q Consensus 831 ~l~~ 834 (1479)
..+.
T Consensus 124 l~~~ 127 (161)
T d2gj8a1 124 ITGE 127 (161)
T ss_dssp HHCC
T ss_pred HHHH
T ss_conf 3355
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.72 E-value=0.0022 Score=38.79 Aligned_cols=131 Identities=16% Similarity=0.159 Sum_probs=69.7
Q ss_pred CCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCC--CCCCCCEEEECCEEEEEECCCCCC-CCCHHHHHHCCCCCCHHH
Q ss_conf 31001499738959999918999768999998468--446774899879589990467688-885889973399899422
Q 000463 662 CLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGE--MHKISGKVKVCGTTAYVAQTSWIQ-NGTIEENILFGLPMNRAK 738 (1479)
Q Consensus 662 ~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe--~~~~~G~v~~~g~iayv~Q~~wi~-~~Ti~eNIlfg~~~~~~~ 738 (1479)
+=.|+.+ . ++++.|.|||.+||||+|+.+.=- |.. .|. .+...-+-++.-..|+ ..-..|++.-|. ..
T Consensus 27 VpNdi~~--~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq-~G~-~vpA~~~~i~~~d~I~~~~~~~d~~~~~~----St 97 (224)
T d1ewqa2 27 VPNDLEM--A-HELVLITGPNMAGKSTFLRQTALIALLAQ-VGS-FVPAEEAHLPLFDGIYTRIGASDDLAGGK----ST 97 (224)
T ss_dssp CCEEEEE--S-SCEEEEESCSSSSHHHHHHHHHHHHHHHT-TTC-CBSSSEEEECCCSEEEEECCC------CC----SH
T ss_pred ECCEEEE--C-CCEEEEECCCCCCCCHHHHHHHHHHHHHH-CCC-EEECCCEEEEECCEEEEEECCCCCCCCCC----CH
T ss_conf 4555884--7-86799978873453234556589999985-250-46137519940116999987776023783----07
Q ss_pred HHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-
Q ss_conf 9999998432999974346886313569886666899999999998129989998076678896569999999995631-
Q 000463 739 YGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGAL- 817 (1479)
Q Consensus 739 y~~v~~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~~~~~l- 817 (1479)
+..-++. +..-++ -..+..++|+||++.+=|+.-+..+....+..+.
T Consensus 98 F~~el~~--~~~il~------------------------------~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~ 145 (224)
T d1ewqa2 98 FMVEMEE--VALILK------------------------------EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE 145 (224)
T ss_dssp HHHHHHH--HHHHHH------------------------------HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHC------------------------------CCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHH
T ss_conf 8986788--987750------------------------------28977278554545686233200258888888862
Q ss_pred CCCEEEEECCCCCCCC
Q ss_conf 9969999804876101
Q 000463 818 KGKTIILVTHQVDFLH 833 (1479)
Q Consensus 818 ~~kTvilvTh~~~~l~ 833 (1479)
++.+.+++||..+...
T Consensus 146 ~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 146 RRAYTLFATHYFELTA 161 (224)
T ss_dssp HTCEEEEECCCHHHHT
T ss_pred CCCCEEEEEECHHHHH
T ss_conf 3761378652023332
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.0041 Score=36.60 Aligned_cols=132 Identities=14% Similarity=0.141 Sum_probs=66.4
Q ss_pred CCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCC--CCCCCCEEEECCEEEEEECCCCCC-CCCHHHHHHCCCCCCHH
Q ss_conf 431001499738959999918999768999998468--446774899879589990467688-88588997339989942
Q 000463 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGE--MHKISGKVKVCGTTAYVAQTSWIQ-NGTIEENILFGLPMNRA 737 (1479)
Q Consensus 661 ~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe--~~~~~G~v~~~g~iayv~Q~~wi~-~~Ti~eNIlfg~~~~~~ 737 (1479)
++=+|+++. +.+....|.|||.|||||+|+.+.=- |....+- +...-+-++---.|+ .....|++.-|...
T Consensus 30 ~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~--VpA~~a~~~~~d~I~~~~~~~d~~~~~~S~--- 103 (234)
T d1wb9a2 30 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY--VPAQKVEIGPIDRIFTRVGAADDLASGRST--- 103 (234)
T ss_dssp CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC--BSSSEEEECCCCEEEEEEC--------------
T ss_pred CCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCE--EECCCEECCCCHHHEEEECCCCCCCCCHHH---
T ss_conf 264057988-99539999546731368999987999999872976--741766613442023487467534365318---
Q ss_pred HHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-
Q ss_conf 2999999843299997434688631356988666689999999999812998999807667889656999999999563-
Q 000463 738 KYGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGA- 816 (1479)
Q Consensus 738 ~y~~v~~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~~~~~- 816 (1479)
+ ..+-+|++-.---..+..++|+||++.+=++.-+..+....+..+
T Consensus 104 -F--------------------------------~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~ 150 (234)
T d1wb9a2 104 -F--------------------------------MVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLA 150 (234)
T ss_dssp -C--------------------------------HHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHH
T ss_pred -H--------------------------------HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf -9--------------------------------9999999999974546608853222358774566678987645432
Q ss_pred CC-CCEEEEECCCCCC
Q ss_conf 19-9699998048761
Q 000463 817 LK-GKTIILVTHQVDF 831 (1479)
Q Consensus 817 l~-~kTvilvTh~~~~ 831 (1479)
.+ +..++++||..+.
T Consensus 151 ~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 151 NKIKALTLFATHYFEL 166 (234)
T ss_dssp HTTCCEEEEECSCGGG
T ss_pred CCCCCEEEEECCHHHH
T ss_conf 0454428985246877
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.028 Score=30.05 Aligned_cols=143 Identities=16% Similarity=0.195 Sum_probs=61.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC----CCCCCEEEECCEEEEEECCCCCCCCCHHHHHH-CCCCCCHHHHHHHHH
Q ss_conf 7389599999189997689999984684----46774899879589990467688885889973-399899422999999
Q 000463 670 IKKGDLTAIVGTVGSGKSSLLASILGEM----HKISGKVKVCGTTAYVAQTSWIQNGTIEENIL-FGLPMNRAKYGEVVR 744 (1479)
Q Consensus 670 i~~g~~~~ivG~~GsGKStLl~~ilGe~----~~~~G~v~~~g~iayv~Q~~wi~~~Ti~eNIl-fg~~~~~~~y~~v~~ 744 (1479)
+.+|+++.|+|+.|+|||+|+..+.--+ +...+...-.+.+.|+.-+.. ...+++.+. .+..++...+....
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~--~~~~~~Rl~~~~~~~~~~~~~~~~- 102 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP--PTAIHHRLHALGAHLSAEERQAVA- 102 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC--HHHHHHHHHHHHTTSCHHHHHHHH-
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCH--HHHHHHHHHHHHHCCCHHHHHCCC-
T ss_conf 55895899992899989999999999997699721112357873689851234--999999999986236866653123-
Q ss_pred HHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC-----CHHHHHHHHHHHHHHHC-C
Q ss_conf 84329999743468863135698866668999999999981299899980766788-----96569999999995631-9
Q 000463 745 VCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAV-----DAHTGSDIFKECVRGAL-K 818 (1479)
Q Consensus 745 ~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LARAly~~~~i~lLDdp~sal-----D~~~~~~i~~~~~~~~l-~ 818 (1479)
..+...+. .+....... ....-.+ +....+++++++|-..... |......++..+..... .
T Consensus 103 -----~~~~~~~~-----~~~~~~~~~--~~~~~~~-~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~ 169 (274)
T d1nlfa_ 103 -----DGLLIQPL-----IGSLPNIMA--PEWFDGL-KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 169 (274)
T ss_dssp -----HHEEECCC-----TTSCCCTTS--HHHHHHH-HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCEECCC-----CCCCCHHHH--HHHHHHH-HHHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf -----33232145-----674203578--9999998-8752676589628135422665232256899998877776447
Q ss_pred CCEEEEECCC
Q ss_conf 9699998048
Q 000463 819 GKTIILVTHQ 828 (1479)
Q Consensus 819 ~kTvilvTh~ 828 (1479)
+.+++++.|.
T Consensus 170 ~~~vi~v~H~ 179 (274)
T d1nlfa_ 170 GCSIVFLHHA 179 (274)
T ss_dssp CCEEEEEEEC
T ss_pred CCCEEHHHHC
T ss_conf 9754013100
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.04 E-value=0.014 Score=32.47 Aligned_cols=111 Identities=20% Similarity=0.264 Sum_probs=67.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCHH
Q ss_conf 389599999189997689999984684467748-9987958999046768888588997339989942299999984329
Q 000463 671 KKGDLTAIVGTVGSGKSSLLASILGEMHKISGK-VKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLE 749 (1479)
Q Consensus 671 ~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~-v~~~g~iayv~Q~~wi~~~Ti~eNIlfg~~~~~~~y~~v~~~c~L~ 749 (1479)
.++.++.++||+||||||.+.+++.+++..... +++...+-| -
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~------------------~------------------ 199 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEF------------------D------------------ 199 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCS------------------C------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC------------------C------------------
T ss_conf 4105489876787774477999866625787469996267434------------------5------------------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 99974346886313569886666899999999998129989998076678896569999999995631996999980487
Q 000463 750 KDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQV 829 (1479)
Q Consensus 750 ~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~i~~~~~~~~l~~kTvilvTh~~ 829 (1479)
+++--++++.+. .|+.---+|..++=+|||+++.+|.- |..+++..+ .....|..|+-.-|--
T Consensus 200 -----~~~~~q~~v~~~-----~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~ 262 (401)
T d1p9ra_ 200 -----IDGIGQTQVNPR-----VDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTN 262 (401)
T ss_dssp -----CSSSEEEECBGG-----GTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCS
T ss_pred -----CCCCCEEEECCC-----CCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCC
T ss_conf -----678870265587-----67799999999984138889845768---759999999----9972498589983367
Q ss_pred CCCCC
Q ss_conf 61012
Q 000463 830 DFLHN 834 (1479)
Q Consensus 830 ~~l~~ 834 (1479)
+-...
T Consensus 263 ~a~~~ 267 (401)
T d1p9ra_ 263 TAVGA 267 (401)
T ss_dssp SSHHH
T ss_pred CHHHH
T ss_conf 66766
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.81 E-value=0.0046 Score=36.26 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9599999189997689999984684
Q 000463 673 GDLTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 673 g~~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
+=.++++|.+|+|||||+++++|.-
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8889999999999999999997787
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.63 E-value=0.0056 Score=35.56 Aligned_cols=33 Identities=36% Similarity=0.528 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 895999991899976899999846844677489
Q 000463 672 KGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704 (1479)
Q Consensus 672 ~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v 704 (1479)
+|+.++++|++|.|||||+++|+|+.....|.|
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v 126 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 126 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCC
T ss_conf 698089978898778888773053555010684
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.59 E-value=0.053 Score=27.84 Aligned_cols=33 Identities=33% Similarity=0.288 Sum_probs=25.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 389299999799998889999985057898628
Q 000463 1293 HGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGR 1325 (1479)
Q Consensus 1293 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~ 1325 (1479)
.++--|-+.|||||||||.+.++++.......+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 410548987678777447799986662578746
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.57 E-value=0.006 Score=35.34 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=28.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8929999979999888999998505789862899
Q 000463 1294 GGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327 (1479)
Q Consensus 1294 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~ 1327 (1479)
+|+...++|.||.|||||+++|.+-.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.47 E-value=0.0064 Score=35.10 Aligned_cols=28 Identities=36% Similarity=0.542 Sum_probs=23.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999918999768999998468446774
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMHKISG 702 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~~~~G 702 (1479)
.++|+|.+|+|||||+++|.|.-....|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 7999899999789999999588867775
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.17 E-value=0.071 Score=26.85 Aligned_cols=23 Identities=48% Similarity=0.700 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.++++|..|+|||||++.+.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.17 E-value=0.023 Score=30.78 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=13.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 5999991899976899999846
Q 000463 674 DLTAIVGTVGSGKSSLLASILG 695 (1479)
Q Consensus 674 ~~~~ivG~~GsGKStLl~~ilG 695 (1479)
+++.++|++||||||+.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.13 E-value=0.073 Score=26.77 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 38959999918999768999998468
Q 000463 671 KKGDLTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 671 ~~g~~~~ivG~~GsGKStLl~~ilGe 696 (1479)
++-+++.++|..||||||+...++-.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99989999899999899999999976
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=95.11 E-value=0.049 Score=28.11 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
-++|+|++|+|||||..+++..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~ 25 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYK 25 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999948898099999999997
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.08 E-value=0.0065 Score=35.08 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.++|+|++|+|||||+++|.|+-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.07 E-value=0.0072 Score=34.70 Aligned_cols=24 Identities=42% Similarity=0.563 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999991899976899999846844
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
.++++|.+|+|||||+++|+|+-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899989999869999999858984
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.00 E-value=0.079 Score=26.50 Aligned_cols=155 Identities=10% Similarity=0.070 Sum_probs=74.5
Q ss_pred CCCEEEEEE--EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHH
Q ss_conf 431001499--738959999918999768999998468446774899879589990467688885889973399899422
Q 000463 661 ECLKNINLE--IKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAK 738 (1479)
Q Consensus 661 ~~L~~i~l~--i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~~wi~~~Ti~eNIlfg~~~~~~~ 738 (1479)
+.|+++ +. +++|.++.|.|+.|||||+|..-++-......+ .+.|++-+ .+..+-+
T Consensus 13 ~~LD~~-l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~------~~~~is~e-----~~~~~~~---------- 70 (242)
T d1tf7a2 13 VRLDEM-CGGGFFKDSIILATGATGTGKTLLVSRFVENACANKE------RAILFAYE-----ESRAQLL---------- 70 (242)
T ss_dssp HHHHHH-TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC------CEEEEESS-----SCHHHHH----------
T ss_pred HHHHHH-HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC------CCCEEECC-----CCHHHHH----------
T ss_conf 779884-5689869849999918999999999999999987232------44112126-----7999999----------
Q ss_pred HHHHHHHHCHHHHHH-HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHH---HHHHHHHH
Q ss_conf 999999843299997-43468863135698866668999999999981-29989998076678896569---99999999
Q 000463 739 YGEVVRVCCLEKDLE-MMEYGDQTEIGERGINLSGGQKQRIQLARAVY-QDCDIYLLDDVFSAVDAHTG---SDIFKECV 813 (1479)
Q Consensus 739 y~~v~~~c~L~~dl~-~l~~Gd~t~ige~g~~LSGGQkqRi~LARAly-~~~~i~lLDdp~salD~~~~---~~i~~~~~ 813 (1479)
+ .++.+..|.+ ....+............. .+...-.+.+++. .++++++.|........... ........
T Consensus 71 --~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~ 145 (242)
T d1tf7a2 71 --R--NAYSWGMDFEEMERQNLLKIVCAYPESAG-LEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVT 145 (242)
T ss_dssp --H--HHHTTSCCHHHHHHTTSEEECCCCGGGSC-HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHH
T ss_pred --H--HHHHCCCCHHHHHHCCCEEEEEEECCHHH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHHHH
T ss_conf --9--99982998699854586179973000101-799999999999840885332204314304899999999999999
Q ss_pred HHHC-CCCEEEEECCCCC----------CC-CCCCEEEEEE
Q ss_conf 5631-9969999804876----------10-1288899993
Q 000463 814 RGAL-KGKTIILVTHQVD----------FL-HNVDLILVMR 842 (1479)
Q Consensus 814 ~~~l-~~kTvilvTh~~~----------~l-~~~D~i~vl~ 842 (1479)
..+. .+.|++++.|... -+ ..+|.|+.++
T Consensus 146 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 146 GYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 99998698399998567512554457764046421699999
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.00 E-value=0.079 Score=26.49 Aligned_cols=159 Identities=14% Similarity=0.155 Sum_probs=71.1
Q ss_pred EEEEEEEEECCCEEEEECCCCCCHHHHHHHHH-CCCCCCCCEEEECCEECCCCCHHHHHCC-EEEECCCCCCCCCCHHHH
Q ss_conf 22113898389299999799998889999985-0578986289996973699895666100-178737665466657660
Q 000463 1285 LKGITLSIHGGEKIGVVGRTGSGKSTLIQVFF-RLVEPSGGRIIIDGIDISLLGLHDLRSR-FGIIPQEPVLFEGTVRSN 1362 (1479)
Q Consensus 1285 L~~isl~I~~GekvgIVGrTGSGKSTLl~~L~-rl~ep~~G~I~IDG~dI~~i~l~~LR~~-i~iIpQdp~LF~GTIR~N 1362 (1479)
|+++.--+.+|+.+-|.|++|+||||++.-+. .+..-..-.+.+-.. +.+.+....+ ++...+-+.--..+.+
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~---E~~~~~~~~r~~~~~~~~~~~~~~~~~-- 99 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML---EESVEETAEDLIGLHNRVRLRQSDSLK-- 99 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES---SSCHHHHHHHHHHHHTTCCGGGCHHHH--
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE---CCCHHHHHHHHHHHHHCCCCHHHCCCC--
T ss_conf 888746978980899994799979999999997265533663457640---111135776999986458710101222--
Q ss_pred CCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC--CCCCEEEEECCCC-----CC
Q ss_conf 5999999999999999984953899719487530001899988905999999999861--6997899837899-----99
Q 000463 1363 IDPIGQYSDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVML--KHSRLLFMDEATA-----SV 1435 (1479)
Q Consensus 1363 Ldp~~~~sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~LARALL--r~~~ILiLDEaTs-----sl 1435 (1479)
.+.++...+.++.......-.-.+-+........ ..+...+... .+++++++|=.+. .-
T Consensus 100 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vvID~l~~l~~~~~~ 165 (277)
T d1cr2a_ 100 ------------REIIENGKFDQWFDELFGNDTFHLYDSFAEAETD--RLLAKLAYMRSGLGCDVIILDHISIVVSASGE 165 (277)
T ss_dssp ------------HHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHH--HHHHHHHHHHHTTCCSEEEEEEEEC-------
T ss_pred ------------CCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH--HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC
T ss_conf ------------2214567788898874035214662143310689--99998654321367625997054212034654
Q ss_pred CHH--HHHHHHHHHHHHC--CCCEEEEECCC
Q ss_conf 998--5999999999873--79478997159
Q 000463 1436 DSQ--TDAEIQRIIREEF--AACTIISIAHR 1462 (1479)
Q Consensus 1436 D~~--te~~Iq~~I~~~~--~~~TvI~IAHR 1462 (1479)
+.. .-..+.+.+++.. .+|+|++++|=
T Consensus 166 ~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~ 196 (277)
T d1cr2a_ 166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHL 196 (277)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 4306778999999999765016552031035
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.90 E-value=0.054 Score=27.79 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99991899976899999846844
Q 000463 676 TAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 676 ~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
+.+.||.|+||||+..+++-++.
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l~ 58 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESIF 58 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99889999988999999997622
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.75 E-value=0.0073 Score=34.65 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999189997689999984684467
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMHKI 700 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~~~ 700 (1479)
.++|+|+.|||||||++.|+.++...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.75 E-value=0.091 Score=26.03 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 838929999979999888999998505
Q 000463 1292 IHGGEKIGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1292 I~~GekvgIVGrTGSGKSTLl~~L~rl 1318 (1479)
+++|..+-|.|++|+|||++..-+..-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 869849999918999999999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.71 E-value=0.092 Score=25.96 Aligned_cols=40 Identities=25% Similarity=0.406 Sum_probs=27.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECC
Q ss_conf 3895999991899976899999846844677489987958999046
Q 000463 671 KKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQT 716 (1479)
Q Consensus 671 ~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~ 716 (1479)
+++..++++|++|+||||.+.-|.-.+.. .| .+++.+.=+
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~-~g-----~kV~lit~D 43 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQN-LG-----KKVMFCAGD 43 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHT-TT-----CCEEEECCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CC-----CCEEEEEEC
T ss_conf 99779999899999889999999999997-79-----907999813
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.53 E-value=0.01 Score=33.54 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89599999189997689999984684
Q 000463 672 KGDLTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 672 ~g~~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.|+++++.|+.||||||+.+.+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.43 E-value=0.0048 Score=36.07 Aligned_cols=33 Identities=33% Similarity=0.463 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 895999991899976899999846844677489
Q 000463 672 KGDLTAIVGTVGSGKSSLLASILGEMHKISGKV 704 (1479)
Q Consensus 672 ~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v 704 (1479)
+|+.++++|++|.|||||+++|+|+.....|.|
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~v 128 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI 128 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCC
T ss_conf 356499987787348789875151767640355
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.38 E-value=0.018 Score=31.59 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=24.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 973895999991899976899999846844
Q 000463 669 EIKKGDLTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 669 ~i~~g~~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
.-++|..+-++|.+||||||+.+.+.-.+.
T Consensus 20 ~~~kg~vIwltGlsGsGKTTia~~L~~~l~ 49 (208)
T d1m7ga_ 20 RNQRGLTIWLTGLSASGKSTLAVELEHQLV 49 (208)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 589986999989999998999999998877
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.35 E-value=0.028 Score=30.09 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=53.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHH
Q ss_conf 29999979999888999998505789862899969736998956661001787376654666576605999999999999
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEEIW 1375 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~~~~sdeeI~ 1375 (1479)
+.|.|+|++||||||+.+.|.+-. .|...++. +++|.....-.+. ... .+ ....++.+
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~--------d~~~~~~~~~~~~---------~~~-~~-~~~~~~~~ 60 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR--------DDYRQSIMAHEER---------DEY-KY-TKKKEGIV 60 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH--------HHHHHHHTTSCCG---------GGC-CC-CHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEECH--------HHHHHHHHCCCCH---------HHH-HH-HHHHHHHH
T ss_conf 799998999999999999999957---99799603--------9999998410110---------012-43-25556889
Q ss_pred HHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHCCCCCEEEEEC
Q ss_conf 9999849538997194875300018999889059-999999998616997899837
Q 000463 1376 KSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQ-RQLLCLGRVMLKHSRLLFMDE 1430 (1479)
Q Consensus 1376 ~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQ-rQll~LARALLr~~~ILiLDE 1430 (1479)
.....-.+...+... ..-...+.+++ ++...+ .|...++|..--+.-++.+|-
T Consensus 61 ~~~~~~~~~~~~~~~-~~~~~vi~d~~-~~~~~~~~~~~~~~~~~~~~~~~i~l~~ 114 (152)
T d1ly1a_ 61 TGMQFDTAKSILYGG-DSVKGVIISDT-NLNPERRLAWETFAKEYGWKVEHKVFDV 114 (152)
T ss_dssp HHHHHHHHHHHHTSC-SSCCEEEECSC-CCSHHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHH-CCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCHHHHHCCC
T ss_conf 999999999998752-24777500466-6899999999986532010045553599
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.20 E-value=0.014 Score=32.42 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999991899976899999846844
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
-++++|+.|+|||||+++|.|+-.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~ 25 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKV 25 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999889999999968985
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.18 E-value=0.016 Score=31.92 Aligned_cols=41 Identities=32% Similarity=0.431 Sum_probs=33.2
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 38983892999997999988899999850578986289996
Q 000463 1289 TLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIID 1329 (1479)
Q Consensus 1289 sl~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~ID 1329 (1479)
..-++.|..+-|+|+|||||||++++|++.++|..=-|.|-
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE 200 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 200 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEECC
T ss_conf 99998378889994035662578999865301456233113
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.16 E-value=0.017 Score=31.73 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 929999979999888999998505
Q 000463 1295 GEKIGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1295 GekvgIVGrTGSGKSTLl~~L~rl 1318 (1479)
|=||+++|++|+|||||++.|.+-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.15 E-value=0.019 Score=31.31 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=23.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 959999918999768999998468446
Q 000463 673 GDLTAIVGTVGSGKSSLLASILGEMHK 699 (1479)
Q Consensus 673 g~~~~ivG~~GsGKStLl~~ilGe~~~ 699 (1479)
|++++++||+||||+|+.+.+..+.+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.06 E-value=0.012 Score=32.87 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
-+|++|+.++|||||+++|.|.-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69998999987999999996899
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.01 E-value=0.014 Score=32.45 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 5999991899976899999846844677
Q 000463 674 DLTAIVGTVGSGKSSLLASILGEMHKIS 701 (1479)
Q Consensus 674 ~~~~ivG~~GsGKStLl~~ilGe~~~~~ 701 (1479)
+.++|+|..|||||||+..++.++....
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g 29 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREG 29 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 0999980999989999999999998679
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.85 E-value=0.013 Score=32.66 Aligned_cols=41 Identities=22% Similarity=0.171 Sum_probs=28.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 89599999189997689999984684467748998795899904676
Q 000463 672 KGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW 718 (1479)
Q Consensus 672 ~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~~w 718 (1479)
+.-.++|+|+.|+|||||+..+...+....- ++|.+.=+|-
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~------~vavlavDps 93 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGL------KVAVIAVDPS 93 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTC------CEEEEEECCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCC------CEEEECCCCC
T ss_conf 8328974389999899999999999975698------3322037776
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.84 E-value=0.069 Score=26.94 Aligned_cols=94 Identities=14% Similarity=0.147 Sum_probs=48.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCHHHH
Q ss_conf 89599999189997689999984684467748998795899904676888858899733998994229999998432999
Q 000463 672 KGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKD 751 (1479)
Q Consensus 672 ~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~~wi~~~Ti~eNIlfg~~~~~~~y~~v~~~c~L~~d 751 (1479)
+...++++|++|+||||.+.-|.-.+.. .| .+++.+.=+.+ |-..+ + +|...
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~-~g-----~kV~lit~Dt~-------------------R~ga~-e--QL~~~ 62 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYKK-KG-----FKVGLVGADVY-------------------RPAAL-E--QLQQL 62 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHHH-TT-----CCEEEEECCCS-------------------SHHHH-H--HHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH-CC-----CCEEEEEEECC-------------------CCCHH-H--HHHHH
T ss_conf 9989999899999989999999999997-79-----93699972023-------------------55156-7--89874
Q ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9743468863135698866668999999999981299899980766
Q 000463 752 LEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVF 797 (1479)
Q Consensus 752 l~~l~~Gd~t~ige~g~~LSGGQkqRi~LARAly~~~~i~lLDdp~ 797 (1479)
-+.+ |......+....+..- .+=++..+...+.|++|.|-|=
T Consensus 63 a~~l--~v~~~~~~~~~~~~~~--~~~a~~~~~~~~~d~IlIDTaG 104 (211)
T d1j8yf2 63 GQQI--GVPVYGEPGEKDVVGI--AKRGVEKFLSEKMEIIIVDTAG 104 (211)
T ss_dssp HHHH--TCCEECCTTCCCHHHH--HHHHHHHHHHTTCSEEEEECCC
T ss_pred CCCC--CCCEEECCCCHHHHHH--HHHHHHHHHCCCCCEEEEECCC
T ss_conf 0146--8422302441024478--9999987402677369985377
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.77 E-value=0.025 Score=30.51 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999991899976899999846844
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
.++++|+.|+|||||++.+.|...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.73 E-value=0.024 Score=30.57 Aligned_cols=22 Identities=50% Similarity=0.782 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|.+|+|||||++++.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.70 E-value=0.0066 Score=35.01 Aligned_cols=57 Identities=19% Similarity=0.140 Sum_probs=37.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCC
Q ss_conf 8929999979999888999998505789862899969736998956661001787376654
Q 000463 1294 GGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVL 1354 (1479)
Q Consensus 1294 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~L 1354 (1479)
+|.+..++|.||.|||||+++|.+-.....|.|.-. ..-|.|.-|.+--+-+....+
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~----~~rGrHTTt~~~l~~~~gg~i 152 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEH----LGRGKHTTRHVELIHTSGGLV 152 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------------------CCCCCEEEETTEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCC----CCCCCEEEEEEEEEECCCCEE
T ss_conf 356499987787348789875151767640355533----589712443478886279789
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.68 E-value=0.023 Score=30.80 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999918999768999998468446
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMHK 699 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~~ 699 (1479)
+++|.|++|||||||.+.|.-....
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.63 E-value=0.024 Score=30.64 Aligned_cols=45 Identities=24% Similarity=0.266 Sum_probs=29.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCC
Q ss_conf 9999918999768999998468446774899879589990467688
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQ 720 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~~wi~ 720 (1479)
+++|.|++||||||+.+.|.-.+....... ..-.+..++++.|-.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~~-~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVDY-RQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSCG-GGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCCCC-CCCCEEEEECCCCCC
T ss_conf 999989997879999999999964101345-788439993465322
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.62 E-value=0.017 Score=31.83 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 929999979999888999998505789
Q 000463 1295 GEKIGVVGRTGSGKSTLIQVFFRLVEP 1321 (1479)
Q Consensus 1295 GekvgIVGrTGSGKSTLl~~L~rl~ep 1321 (1479)
|..|.|+||+|||||||.+.|..-++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.52 E-value=0.015 Score=32.21 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999189997689999984684
Q 000463 676 TAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 676 ~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
+|++|..++|||||++.|.|+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.51 E-value=0.15 Score=24.24 Aligned_cols=42 Identities=31% Similarity=0.551 Sum_probs=29.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEECCEECCC
Q ss_conf 89299999799998889999985057------------8986289996973699
Q 000463 1294 GGEKIGVVGRTGSGKSTLIQVFFRLV------------EPSGGRIIIDGIDISL 1335 (1479)
Q Consensus 1294 ~GekvgIVGrTGSGKSTLl~~L~rl~------------ep~~G~I~IDG~dI~~ 1335 (1479)
.+=+|||+|++|+|||||+++|++-- .+..|.+.++|.++..
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 60 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVF 60 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCCCEEEE
T ss_conf 888899999999999999999977876224225654333200122049923465
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=93.47 E-value=0.16 Score=24.19 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=25.4
Q ss_pred CCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9951221138983892999997999988899999850
Q 000463 1281 TPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFR 1317 (1479)
Q Consensus 1281 ~~~vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~r 1317 (1479)
.+.++.|+ .||+.+-|+|++|+||||++..|.-
T Consensus 19 ~d~li~G~----~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 19 LDYVLPNM----VAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp CCEEETTE----ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHCCC----CCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 78986895----5895899992899989999999999
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.44 E-value=0.013 Score=32.76 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.++++|.+++|||||+++|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998899998999999985898
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=93.23 E-value=0.023 Score=30.67 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=24.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9999979999888999998505789862899
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFRLVEPSGGRII 1327 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~ 1327 (1479)
.++|+|++|||||||++.|.+-+...+.++.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~ 34 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPG 34 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 8999918999899999999999997797687
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.23 E-value=0.074 Score=26.71 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=23.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 973895999991899976899999846
Q 000463 669 EIKKGDLTAIVGTVGSGKSSLLASILG 695 (1479)
Q Consensus 669 ~i~~g~~~~ivG~~GsGKStLl~~ilG 695 (1479)
-+++|+++.|.|+.|||||+|..-++-
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 955887999985898988999999999
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.025 Score=30.51 Aligned_cols=43 Identities=14% Similarity=0.297 Sum_probs=31.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCC
Q ss_conf 99999189997689999984684467748998795899904676888
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQN 721 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~~wi~~ 721 (1479)
+++|.|++||||||+.+.|...+....+ .-++..++++.+...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~----~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE----HRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT----CCCEEEEEGGGGBCC
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC----CCCEEEEEEEEEECC
T ss_conf 9999689999876899999999730468----996599952156898
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=93.11 E-value=0.13 Score=24.82 Aligned_cols=27 Identities=22% Similarity=0.494 Sum_probs=23.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 389599999189997689999984684
Q 000463 671 KKGDLTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 671 ~~g~~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
..+.++.++|++||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.11 E-value=0.035 Score=29.28 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=23.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3895999991899976899999846844
Q 000463 671 KKGDLTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 671 ~~g~~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
++|.++.++|..||||||+..+|.-.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.09 E-value=0.04 Score=28.80 Aligned_cols=27 Identities=41% Similarity=0.537 Sum_probs=23.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 389599999189997689999984684
Q 000463 671 KKGDLTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 671 ~~g~~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
|+|..+++.|+.||||||+.+.|.-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.06 E-value=0.028 Score=30.03 Aligned_cols=24 Identities=33% Similarity=0.446 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 599999189997689999984684
Q 000463 674 DLTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 674 ~~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
+.++|+|+.|||||||.+.|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.92 E-value=0.18 Score=23.59 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.++|+|...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.81 E-value=0.038 Score=29.04 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999918999768999998468
Q 000463 676 TAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 676 ~~ivG~~GsGKStLl~~ilGe 696 (1479)
+|++|.+.+|||||+++|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=92.73 E-value=0.038 Score=29.03 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999888999998505
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~rl 1318 (1479)
+|+|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.70 E-value=0.047 Score=28.27 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8959999918999768999998468446
Q 000463 672 KGDLTAIVGTVGSGKSSLLASILGEMHK 699 (1479)
Q Consensus 672 ~g~~~~ivG~~GsGKStLl~~ilGe~~~ 699 (1479)
.|.+++|+||+|+||+||.+.++-+.+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~ 28 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPL 28 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9809999999999999999999863986
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.64 E-value=0.03 Score=29.83 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 895999991899976899999846844
Q 000463 672 KGDLTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 672 ~g~~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
+.-.++++|..|+|||||++.+.|...
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 777899999999898999999967887
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=92.63 E-value=0.062 Score=27.34 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.++|+|+.|||||||++.++...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.57 E-value=0.13 Score=24.80 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|..|+|||||++.+++.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.56 E-value=0.055 Score=27.71 Aligned_cols=42 Identities=19% Similarity=0.327 Sum_probs=20.3
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 12998999807667889656999999999563199699998048761
Q 000463 785 YQDCDIYLLDDVFSAVDAHTGSDIFKECVRGALKGKTIILVTHQVDF 831 (1479)
Q Consensus 785 y~~~~i~lLDdp~salD~~~~~~i~~~~~~~~l~~kTvilvTh~~~~ 831 (1479)
..+.|++|+|-.- ... .....+.+.+ ...+|.+++|-+..+.
T Consensus 133 ~~~~d~~l~~~~~-~~~-~~d~~l~~~l---~~~~k~~~~V~nK~D~ 174 (400)
T d1tq4a_ 133 FYEYDFFIIISAT-RFK-KNDIDIAKAI---SMMKKEFYFVRTKVDS 174 (400)
T ss_dssp GGGCSEEEEEESS-CCC-HHHHHHHHHH---HHTTCEEEEEECCHHH
T ss_pred HHCCEEEEEECCC-CCC-HHHHHHHHHH---HHCCCCEEEEEECCCC
T ss_conf 3226599996588-887-8899999999---9769987999708632
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.56 E-value=0.035 Score=29.30 Aligned_cols=37 Identities=30% Similarity=0.409 Sum_probs=26.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCC---CEEEECCEE
Q ss_conf 2999997999988899999850578986---289996973
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFRLVEPSG---GRIIIDGID 1332 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~rl~ep~~---G~I~IDG~d 1332 (1479)
..+||+|++|||||||+..|.+.+...+ |.|.-|+.+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~ 41 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 41 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 0999980999989999999999998679837999831676
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.54 E-value=0.046 Score=28.38 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.++++|..|+|||||++.+.+.-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.51 E-value=0.046 Score=28.34 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.++++|+.|+|||||++.+.|+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.50 E-value=0.13 Score=24.85 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=22.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 38959999918999768999998468446
Q 000463 671 KKGDLTAIVGTVGSGKSSLLASILGEMHK 699 (1479)
Q Consensus 671 ~~g~~~~ivG~~GsGKStLl~~ilGe~~~ 699 (1479)
++-..++++|++|+||||.+.-|.-.+..
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~ 35 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFEQ 35 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 99979999899999989999999999997
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=92.49 E-value=0.12 Score=25.06 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=41.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHH--HCC-CCC---CC
Q ss_conf 299999799998889999985057898628999697369989566610017873766546665766--059-999---99
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRS--NID-PIG---QY 1369 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~GTIR~--NLd-p~~---~~ 1369 (1479)
=.|||.|++||||||+.+.|..+..-..+ ..++.+|++|.+..+...++ ++. .++ .+
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l~~~~~~~~~g~Pes~ 143 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVLKERGLMKKKGFPESY 143 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGB
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHCC-----------------CCCEEEEEEEEEECCCHHHHHHCCCCCCCCHHHH
T ss_conf 89999689999876899999999730468-----------------9965999521568984588883687668816763
Q ss_pred CHHHHHHHHHHC
Q ss_conf 999999999984
Q 000463 1370 SDEEIWKSLERC 1381 (1479)
Q Consensus 1370 sdeeI~~aL~~~ 1381 (1479)
+-+.+.+.+...
T Consensus 144 D~~~L~~~L~~l 155 (308)
T d1sq5a_ 144 DMHRLVKFVSDL 155 (308)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 199999999999
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.34 E-value=0.22 Score=23.04 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=28.2
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECC
Q ss_conf 49973895999991899976899999846844677489987958999046
Q 000463 667 NLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQT 716 (1479)
Q Consensus 667 ~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~ 716 (1479)
|+.-++...++++|++|+||||.+.-|.-.+.. .| .+++.+.=+
T Consensus 5 ~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~-~~-----~kV~lit~D 48 (213)
T d1vmaa2 5 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD-EG-----KSVVLAAAD 48 (213)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH-TT-----CCEEEEEEC
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CC-----CCEEEEEEC
T ss_conf 679999989999899999889999999999997-79-----906999601
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.26 E-value=0.063 Score=27.27 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=27.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8929999979999888999998505789862899969
Q 000463 1294 GGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDG 1330 (1479)
Q Consensus 1294 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1330 (1479)
+|+.|.|.|++||||||+.+.|.+-... --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.20 E-value=0.047 Score=28.29 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=33.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE------------EECCEECCCCCHHHHHCC
Q ss_conf 892999997999988899999850578986289------------996973699895666100
Q 000463 1294 GGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRI------------IIDGIDISLLGLHDLRSR 1344 (1479)
Q Consensus 1294 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I------------~IDG~dI~~i~l~~LR~~ 1344 (1479)
.|..+-|+||||+||+||.+.|..-.+...-.. .+||+|-.-++.+...+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~ 63 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEM 63 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEECHHHHHHH
T ss_conf 980999999999999999999986398668427888763678865543212334328999987
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=92.04 E-value=0.069 Score=26.97 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 895999991899976899999846844
Q 000463 672 KGDLTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 672 ~g~~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
..+++.++|++||||||+.+.|..++.
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 985999989999998999999999728
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.99 E-value=0.036 Score=29.20 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999918999768999998468446
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMHK 699 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~~ 699 (1479)
.+.+.||.|+||||+.++++.++..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~~ 71 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELFG 71 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 6999789997487999999999873
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.95 E-value=0.059 Score=27.48 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.++++|+.|+|||||++.+.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=91.94 E-value=0.059 Score=27.47 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|+.|+|||||++.+.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.84 E-value=0.05 Score=28.08 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 95999991899976899999846844677
Q 000463 673 GDLTAIVGTVGSGKSSLLASILGEMHKIS 701 (1479)
Q Consensus 673 g~~~~ivG~~GsGKStLl~~ilGe~~~~~ 701 (1479)
+++++|.|+.||||||+.+.|.-.+....
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 98899989999898999999999998769
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=91.79 E-value=0.25 Score=22.59 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 959999918999768999998468446
Q 000463 673 GDLTAIVGTVGSGKSSLLASILGEMHK 699 (1479)
Q Consensus 673 g~~~~ivG~~GsGKStLl~~ilGe~~~ 699 (1479)
...++++|++|+||||.+.-|...+..
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~ 36 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKG 36 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 868999899999889999999999997
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.76 E-value=0.095 Score=25.86 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99991899976899999846844
Q 000463 676 TAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 676 ~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
+.+.||.|+||||+..+++.++.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.75 E-value=0.063 Score=27.26 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999888999998505
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~rl 1318 (1479)
+|.++|+||+|||||++.|+|-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999899998699999998589
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.66 E-value=0.26 Score=22.48 Aligned_cols=26 Identities=15% Similarity=0.368 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89599999189997689999984684
Q 000463 672 KGDLTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 672 ~g~~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
+-..++++|+.||||||+...|...+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97289998999999899999999985
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.65 E-value=0.014 Score=32.44 Aligned_cols=23 Identities=43% Similarity=0.548 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.++++|..|+|||||++++.|+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.62 E-value=0.031 Score=29.75 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=27.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 599999189997689999984684467748998
Q 000463 674 DLTAIVGTVGSGKSSLLASILGEMHKISGKVKV 706 (1479)
Q Consensus 674 ~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~ 706 (1479)
+.+.|+|++|+|||||+..+..++....+.+.+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~ 34 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 699998899971999999999999977997999
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=91.57 E-value=0.069 Score=26.97 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 389299999799998889999985057
Q 000463 1293 HGGEKIGVVGRTGSGKSTLIQVFFRLV 1319 (1479)
Q Consensus 1293 ~~GekvgIVGrTGSGKSTLl~~L~rl~ 1319 (1479)
+.+..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.34 E-value=0.085 Score=26.26 Aligned_cols=26 Identities=12% Similarity=0.341 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 95999991899976899999846844
Q 000463 673 GDLTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 673 g~~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
.++++++||+|+||+||.+.++.+.+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=91.30 E-value=0.076 Score=26.62 Aligned_cols=24 Identities=46% Similarity=0.600 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999988899999850578
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFRLVE 1320 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~rl~e 1320 (1479)
.|+|+|+.|||||||++.|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.26 E-value=0.28 Score=22.19 Aligned_cols=88 Identities=22% Similarity=0.159 Sum_probs=50.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCCCCCCHH
Q ss_conf 38929999979999888999998505789862899969736998956661001787376654666576605999999999
Q 000463 1293 HGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDE 1372 (1479)
Q Consensus 1293 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~~~~sde 1372 (1479)
+.-+.|-++|..||||||+.+.++.- .|.+.|+. +++++ -+
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~--------D~~~~---------------------------~~ 52 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNR--------DTLGS---------------------------WQ 52 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEH--------HHHCS---------------------------HH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEECH--------HHHHH---------------------------HH
T ss_conf 99989999899999899999999976----59789760--------77778---------------------------88
Q ss_pred HHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf 9999999849538997194875300018999889059999-99999861699789983
Q 000463 1373 EIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQL-LCLGRVMLKHSRLLFMD 1429 (1479)
Q Consensus 1373 eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQl-l~LARALLr~~~ILiLD 1429 (1479)
.+.+.++. .+..|.+..+ ++.|++..+|+. +.+||..=-+..++.+|
T Consensus 53 ~~~~~~~~--------~l~~g~~vIi--D~t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 53 RCVSSCQA--------ALRQGKRVVI--DNTNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp HHHHHHHH--------HHHTTCCEEE--ESCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHHHHHH--------HHHCCCCCEE--ECCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99999999--------9977999555--176799999999999998558887999948
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.25 E-value=0.28 Score=22.18 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999991899976899999846844
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
-+.+.||.|+|||++.+++..++.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.15 E-value=0.077 Score=26.60 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999918999768999998468446
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMHK 699 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~~ 699 (1479)
.++|+||+||||+||.+.++.+.+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=90.98 E-value=0.069 Score=26.99 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.++++|+.||||||+.+.|.-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.91 E-value=0.3 Score=21.95 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 59999918999768999998468446
Q 000463 674 DLTAIVGTVGSGKSSLLASILGEMHK 699 (1479)
Q Consensus 674 ~~~~ivG~~GsGKStLl~~ilGe~~~ 699 (1479)
..+.+.|+.|+||+|+..++..++..
T Consensus 35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~~ 60 (239)
T d1njfa_ 35 HAYLFSGTRGVGKTSIARLLAKGLNC 60 (239)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 05988889987589999999998468
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=90.90 E-value=0.11 Score=25.44 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=23.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 389599999189997689999984684
Q 000463 671 KKGDLTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 671 ~~g~~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
|+|-.++++|+.||||||....|.-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=90.89 E-value=0.081 Score=26.41 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999991899976899999846844
Q 000463 674 DLTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 674 ~~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
.++.++|+.||||||+.+.|...+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.83 E-value=0.3 Score=21.90 Aligned_cols=110 Identities=17% Similarity=0.205 Sum_probs=62.9
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCHH
Q ss_conf 73895999991899976899999846844677489987958999046768888588997339989942299999984329
Q 000463 670 IKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLE 749 (1479)
Q Consensus 670 i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~~wi~~~Ti~eNIlfg~~~~~~~y~~v~~~c~L~ 749 (1479)
+++..-+.+.||.|+|||+|.+++.++... .+-++. .
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~~---------~~~~~~----------------------------------~ 74 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQA---------NFISIK----------------------------------G 74 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTTC---------EEEEEC----------------------------------H
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCC---------CEEEEE----------------------------------H
T ss_conf 998875788789987630477887877189---------479988----------------------------------7
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH---------HHHHHHHHHHH---HHC
Q ss_conf 999743468863135698866668999999999981299899980766788965---------69999999995---631
Q 000463 750 KDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAH---------TGSDIFKECVR---GAL 817 (1479)
Q Consensus 750 ~dl~~l~~Gd~t~ige~g~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~---------~~~~i~~~~~~---~~l 817 (1479)
.++.. ...| ...++-|-.+.+|-...|-|+++||.=...... ...++....+. +..
T Consensus 75 ~~l~~------~~~~------~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 142 (265)
T d1r7ra3 75 PELLT------MWFG------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 142 (265)
T ss_dssp HHHHT------SCTT------THHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC---
T ss_pred HHHHH------CCCC------CHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99525------3165------15899999999998639843568754632455787678873799999999999962867
Q ss_pred C--CCEEEEECCCCCCCCC
Q ss_conf 9--9699998048761012
Q 000463 818 K--GKTIILVTHQVDFLHN 834 (1479)
Q Consensus 818 ~--~kTvilvTh~~~~l~~ 834 (1479)
. +.-+|..||+++.++.
T Consensus 143 ~~~~v~vi~ttn~~~~ld~ 161 (265)
T d1r7ra3 143 TKKNVFIIGATNRPDIIDP 161 (265)
T ss_dssp ---CCEEEECCBSCTTTSC
T ss_pred CCCCEEEEEECCCCHHCCH
T ss_conf 7799899991799222799
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=90.80 E-value=0.1 Score=25.66 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=24.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3892999997999988899999850578
Q 000463 1293 HGGEKIGVVGRTGSGKSTLIQVFFRLVE 1320 (1479)
Q Consensus 1293 ~~GekvgIVGrTGSGKSTLl~~L~rl~e 1320 (1479)
|+|-+|.|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.65 E-value=0.22 Score=22.95 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=17.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 5999991899976899999846
Q 000463 674 DLTAIVGTVGSGKSSLLASILG 695 (1479)
Q Consensus 674 ~~~~ivG~~GsGKStLl~~ilG 695 (1479)
-.++++|..|+|||||++.+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 3899999899298999999971
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.58 E-value=0.095 Score=25.85 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 29999979999888999998505789
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFRLVEP 1321 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~rl~ep 1321 (1479)
=.|||.|++||||||+.+.|...+..
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 89997898878999999999998363
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.55 E-value=0.091 Score=26.00 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999991899976899999846844
Q 000463 674 DLTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 674 ~~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
.+++++|..||||||+.+.|...+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=90.42 E-value=0.11 Score=25.24 Aligned_cols=22 Identities=32% Similarity=0.609 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999888999998505
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~rl 1318 (1479)
+|+++|++|+|||||++.|++-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=90.39 E-value=0.18 Score=23.59 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9599999189997689999984684
Q 000463 673 GDLTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 673 g~~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
+-.++++|...+|||||++++.+.-
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 7379997899998999999997789
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.34 E-value=0.11 Score=25.48 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 599999189997689999984684
Q 000463 674 DLTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 674 ~~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
-.+||+|.+.+|||||+++|++..
T Consensus 6 p~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 6 PIVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHC
T ss_conf 879999699854999999998236
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.25 E-value=0.051 Score=27.97 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 895999991899976899999846844
Q 000463 672 KGDLTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 672 ~g~~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
+|..+.++|..||||||+.+.|.-.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=90.22 E-value=0.18 Score=23.70 Aligned_cols=43 Identities=30% Similarity=0.548 Sum_probs=34.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 9738959999918999768999998468446774899879589990467
Q 000463 669 EIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTS 717 (1479)
Q Consensus 669 ~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~~ 717 (1479)
-++.|.++-+.|+.|||||++...++....+.. |.++|+.-+.
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g------~~v~yiDtE~ 95 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAG------GTCAFIDAEH 95 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT------CCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC------CEEEEEECCC
T ss_conf 866754789805876522799999999997079------9899998876
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=90.22 E-value=0.11 Score=25.36 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999991899976899999846844
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
.++++|+.|+|||||++.+.|+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.19 E-value=0.34 Score=21.50 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999991899976899999846844
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
-+.+.||.|+|||++.+++..+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 799889699988999999862010
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.15 E-value=0.11 Score=25.46 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999991899976899999846844
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
.++|+||+||||+|+.+.++-+.+
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 199999999999999999997488
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.13 E-value=0.31 Score=21.81 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|..|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=90.13 E-value=0.12 Score=25.16 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999888999998505
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~rl 1318 (1479)
+|+++|++|+|||||++.|.|-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.11 E-value=0.11 Score=25.44 Aligned_cols=24 Identities=42% Similarity=0.614 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999991899976899999846844
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
.++|+|..+||||||+++|+|+--
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred EEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 599981898979999999968997
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=90.06 E-value=0.35 Score=21.42 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=33.2
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHH
Q ss_conf 6997899837899999985999999999873--7947899715913563
Q 000463 1421 KHSRLLFMDEATASVDSQTDAEIQRIIREEF--AACTIISIAHRIPTVM 1467 (1479)
Q Consensus 1421 r~~~ILiLDEaTsslD~~te~~Iq~~I~~~~--~~~TvI~IAHRl~ti~ 1467 (1479)
.+..++++||.-.+-|++.-..+-..+-+.+ .+++++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 9772785545456862332002588888888623761378652023332
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.96 E-value=0.089 Score=26.07 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=26.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 99999189997689999984684467748998795899904676
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSW 718 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~~w 718 (1479)
+++|.|+.|||||||...|.-.+....|. .-.++.++.+.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~~---~~~v~~iS~Ddf 69 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEKYGG---EKSIGYASIDDF 69 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHGG---GSCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCC---CCCEEEECCCCC
T ss_conf 99837998788999999999999987277---860676356777
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=89.95 E-value=0.12 Score=25.14 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=24.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3892999997999988899999850578
Q 000463 1293 HGGEKIGVVGRTGSGKSTLIQVFFRLVE 1320 (1479)
Q Consensus 1293 ~~GekvgIVGrTGSGKSTLl~~L~rl~e 1320 (1479)
+.|-.|-++|.+||||||+.+.|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.94 E-value=0.22 Score=22.97 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=32.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 9738959999918999768999998468446774899879589990467
Q 000463 669 EIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTS 717 (1479)
Q Consensus 669 ~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~~ 717 (1479)
-+++|+++.|.|+.|||||+|..-++-........-..++.+.|+..+.
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~ 78 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 78 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 9869969999838999889999999998631243126896399994023
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.93 E-value=0.14 Score=24.46 Aligned_cols=22 Identities=41% Similarity=0.418 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999888999998505
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~rl 1318 (1479)
.|+|||++|+|||||+++|.+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=89.88 E-value=0.09 Score=26.06 Aligned_cols=24 Identities=42% Similarity=0.749 Sum_probs=11.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299999799998889999985057
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFRLV 1319 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~rl~ 1319 (1479)
-+|||+|+.|||||||+..|.+.+
T Consensus 55 ~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 55 LRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289743899998999999999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=89.80 E-value=0.12 Score=25.21 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 38959999918999768999998468
Q 000463 671 KKGDLTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 671 ~~g~~~~ivG~~GsGKStLl~~ilGe 696 (1479)
++.-.++++|..|+|||||++.+.+.
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.70 E-value=0.13 Score=24.75 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
-++++|+.|+|||||++.+.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999809
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=89.68 E-value=0.16 Score=24.17 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799998889999985057
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFRLV 1319 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~rl~ 1319 (1479)
.|||+|++.||||||+++|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.65 E-value=0.19 Score=23.52 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=25.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 973895999991899976899999846844
Q 000463 669 EIKKGDLTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 669 ~i~~g~~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
-+++|+++.|.|+.|||||+|...++....
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 985997999995899999999999999998
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.59 E-value=0.13 Score=24.86 Aligned_cols=11 Identities=9% Similarity=0.157 Sum_probs=4.5
Q ss_pred HHHHHHHCCCC
Q ss_conf 99999812998
Q 000463 779 QLARAVYQDCD 789 (1479)
Q Consensus 779 ~LARAly~~~~ 789 (1479)
.+++...++++
T Consensus 159 ~~~~~yi~~~~ 169 (306)
T d1jwyb_ 159 RMVMAYIKKQN 169 (306)
T ss_dssp HHHHHHHHSTT
T ss_pred HHHHHHHHCCC
T ss_conf 99999982777
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.58 E-value=0.26 Score=22.38 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9599999189997689999984684
Q 000463 673 GDLTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 673 g~~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
+-.++++|-..+|||||++++.+--
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8348888999998899999997799
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.48 E-value=0.11 Score=25.22 Aligned_cols=24 Identities=13% Similarity=0.343 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299999799998889999985057
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFRLV 1319 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~rl~ 1319 (1479)
.-|.|+||||+||+||.+.|.+-.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.44 E-value=0.27 Score=22.26 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=25.8
Q ss_pred CCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 43100149973895999991899976899999846
Q 000463 661 ECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILG 695 (1479)
Q Consensus 661 ~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilG 695 (1479)
..++..-+.+ .|.-+.++|++|+||||+...+..
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3178999999-999999981899998999999998
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.44 E-value=0.19 Score=23.50 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=24.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9838929999979999888999998505
Q 000463 1291 SIHGGEKIGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1291 ~I~~GekvgIVGrTGSGKSTLl~~L~rl 1318 (1479)
-+++|+.+-|.|++|+||||+..-+..-
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9859979999958999999999999999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.41 E-value=0.14 Score=24.55 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|..|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=89.39 E-value=0.14 Score=24.62 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=18.2
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 599999189997689999984
Q 000463 674 DLTAIVGTVGSGKSSLLASIL 694 (1479)
Q Consensus 674 ~~~~ivG~~GsGKStLl~~il 694 (1479)
-+++|+|..||||||+.+.+-
T Consensus 3 ~iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899988888788999999999
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=89.39 E-value=0.13 Score=24.75 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.+.++|+.||||||+.+.|.-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.38 E-value=0.13 Score=24.75 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.+|++|...+|||||++++.|--
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17688999998999999997889
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.38 E-value=0.39 Score=21.05 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|..|+|||||++.+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.38 E-value=0.11 Score=25.47 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=22.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299999799998889999985057
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFRLV 1319 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~rl~ 1319 (1479)
.+|+|.|++|+|||||.+.|..-+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=89.37 E-value=0.12 Score=24.97 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=18.4
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 599999189997689999984
Q 000463 674 DLTAIVGTVGSGKSSLLASIL 694 (1479)
Q Consensus 674 ~~~~ivG~~GsGKStLl~~il 694 (1479)
-+++|+|..||||||+...+-
T Consensus 4 ~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899998988778999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.30 E-value=0.11 Score=25.47 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=24.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 2999997999988899999850578986289
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFRLVEPSGGRI 1326 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I 1326 (1479)
..|+|.|+.||||||+.+.|...+......+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 8899989999898999999999998769986
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.29 E-value=0.29 Score=22.10 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=23.1
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7389599999189997689999984684
Q 000463 670 IKKGDLTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 670 i~~g~~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
++++.++.+.|+.||||||....|.-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.26 E-value=0.14 Score=24.44 Aligned_cols=44 Identities=27% Similarity=0.393 Sum_probs=29.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCC
Q ss_conf 9999979999888999998505789862899969736998956661001787376654
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVL 1354 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~L 1354 (1479)
.|||.|++||||||+.+.|...+.-.. ...-...+.+++||.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~--------------~~~~~~~~~vi~~D~yy 47 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE--------------VDYRQKQVVILSQDSFY 47 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG--------------SCGGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHC--------------CCCCCCCEEEEECCCCC
T ss_conf 999989997879999999999964101--------------34578843999346532
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.16 E-value=0.36 Score=21.29 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.++++|..|+|||||++.+++.-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989978999999997197
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.13 E-value=0.15 Score=24.22 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.++++|..|+|||||++.+.+.-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=89.12 E-value=0.13 Score=24.70 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 92999997999988899999850578
Q 000463 1295 GEKIGVVGRTGSGKSTLIQVFFRLVE 1320 (1479)
Q Consensus 1295 GekvgIVGrTGSGKSTLl~~L~rl~e 1320 (1479)
...|.|.|++||||||+.+.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.10 E-value=0.12 Score=25.20 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 895999991899976899999846844
Q 000463 672 KGDLTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 672 ~g~~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
++++++|-|+.||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.10 E-value=0.15 Score=24.20 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89599999189997689999984684
Q 000463 672 KGDLTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 672 ~g~~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
+..+++|+|+.||||||+...|.-.+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.04 E-value=0.14 Score=24.48 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=10.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999979999888999998505
Q 000463 1298 IGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1298 vgIVGrTGSGKSTLl~~L~rl 1318 (1479)
+++||...||||||+++|+|.
T Consensus 29 ivvvG~~SsGKSsliNaLlg~ 49 (299)
T d2akab1 29 IAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999768989799999999689
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=89.00 E-value=0.41 Score=20.85 Aligned_cols=151 Identities=19% Similarity=0.131 Sum_probs=65.8
Q ss_pred CCCEEEEE-EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHH-HCCCCCCHHH
Q ss_conf 43100149-973895999991899976899999846844677489987958999046768888588997-3399899422
Q 000463 661 ECLKNINL-EIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENI-LFGLPMNRAK 738 (1479)
Q Consensus 661 ~~L~~i~l-~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~~wi~~~Ti~eNI-lfg~~~~~~~ 738 (1479)
+.|+++-- -+++|+++.|.|++|+|||+|..-++....... ...+.|++-+.- ...++... .++ ++..
T Consensus 13 ~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~-----~~~~~~~s~e~~--~~~~~~~~~~~~--~~~~- 82 (242)
T d1tf7a1 13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-----DEPGVFVTFEET--PQDIIKNARSFG--WDLA- 82 (242)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-----CCCEEEEESSSC--HHHHHHHHGGGT--CCHH-
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC-----CCCCCCCCCCCC--HHHHHHHHHHCC--CCHH-
T ss_conf 779885568996983999994799999999999999999856-----887420126679--999999999849--9848-
Q ss_pred HHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHH-HHH-HHHHHH-CCCCEEEEECCCCCCCHH----HHHHHHHH
Q ss_conf 99999984329999743468863135698866668999-999-999981-299899980766788965----69999999
Q 000463 739 YGEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQ-RIQ-LARAVY-QDCDIYLLDDVFSAVDAH----TGSDIFKE 811 (1479)
Q Consensus 739 y~~v~~~c~L~~dl~~l~~Gd~t~ige~g~~LSGGQkq-Ri~-LARAly-~~~~i~lLDdp~salD~~----~~~~i~~~ 811 (1479)
..++. . ....-+.....+.-......... -+. +.+++. .++++++.|....-.+.. .....+..
T Consensus 83 --~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~~~~~~~ 153 (242)
T d1tf7a1 83 --KLVDE------G-KLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFR 153 (242)
T ss_dssp --HHHHT------T-SEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHH
T ss_pred --HHHHH------C-CHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf --98871------4-30244421033544443024589999999999886312220020788998760572678999999
Q ss_pred HHHHHC-CCCEEEEECCCCC
Q ss_conf 995631-9969999804876
Q 000463 812 CVRGAL-KGKTIILVTHQVD 830 (1479)
Q Consensus 812 ~~~~~l-~~kTvilvTh~~~ 830 (1479)
+..... .+.|++++.|...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~ 173 (242)
T d1tf7a1 154 LVARLKQIGATTVMTTERIE 173 (242)
T ss_dssp HHHHHHHHTCEEEEEEECSS
T ss_pred HHHHHHHCCCCEEEEECCCC
T ss_conf 99999863971688421025
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=88.91 E-value=0.0056 Score=35.58 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=26.8
Q ss_pred CCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3100149973895999991899976899999846
Q 000463 662 CLKNINLEIKKGDLTAIVGTVGSGKSSLLASILG 695 (1479)
Q Consensus 662 ~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilG 695 (1479)
..++.++++.+| +++|+|+|||||||++.||.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 870279974998-089988999987999999999
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=88.83 E-value=0.31 Score=21.78 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=22.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 59999918999768999998468446
Q 000463 674 DLTAIVGTVGSGKSSLLASILGEMHK 699 (1479)
Q Consensus 674 ~~~~ivG~~GsGKStLl~~ilGe~~~ 699 (1479)
..+.+.||.||||||+.++|.+++..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 79998897998899999999998651
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.80 E-value=0.14 Score=24.61 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999979999888999998505
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~rl 1318 (1479)
-+|+|+|++|+|||||++.|.+-
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89999999998899999999679
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.78 E-value=0.079 Score=26.51 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
-++++|.+++|||||+..|++..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~~ 27 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYVA 27 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999478984999999999985
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.64 E-value=0.17 Score=23.79 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|..|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=88.64 E-value=0.12 Score=24.94 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=25.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 29999979999888999998505789862899969
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDG 1330 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1330 (1479)
..|.|+|++||||||+.+.|.+-+. +...++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.56 E-value=0.35 Score=21.38 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.++++|..|+|||||++.+.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=88.22 E-value=0.15 Score=24.25 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|+.|+|||||++.+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999648
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=88.13 E-value=0.16 Score=24.11 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=22.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 389299999799998889999985057
Q 000463 1293 HGGEKIGVVGRTGSGKSTLIQVFFRLV 1319 (1479)
Q Consensus 1293 ~~GekvgIVGrTGSGKSTLl~~L~rl~ 1319 (1479)
++.-||.+||++|+|||||++.|.+=.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 777789999999989899999996788
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=88.10 E-value=0.18 Score=23.63 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 895999991899976899999846844
Q 000463 672 KGDLTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 672 ~g~~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
+.-+++|-|..||||||+++.|.....
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 861999889999888999999998707
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.05 E-value=0.084 Score=26.27 Aligned_cols=40 Identities=10% Similarity=0.210 Sum_probs=29.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCC
Q ss_conf 5999991899976899999846844677489987958999046768
Q 000463 674 DLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWI 719 (1479)
Q Consensus 674 ~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~~wi 719 (1479)
-+++|+|++||||||+.+++....... +-+.+.++|+.+-
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~~------~v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRRE------GVKAVSIEGDAFH 44 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHH------TCCEEEEEGGGGB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC------CCCEEEEECCCCC
T ss_conf 899998999780999999999997156------9976999477787
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.01 E-value=0.21 Score=23.15 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999888999998505
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~rl 1318 (1479)
.|+|+|++|+|||||+++|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=87.98 E-value=0.1 Score=25.55 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 959999918999768999998468446
Q 000463 673 GDLTAIVGTVGSGKSSLLASILGEMHK 699 (1479)
Q Consensus 673 g~~~~ivG~~GsGKStLl~~ilGe~~~ 699 (1479)
.-.++|.|+.|+|||||+..+...+..
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~~~ 77 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLLTA 77 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 159861179988899999999998763
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.92 E-value=0.2 Score=23.25 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.++++|..|+|||||++.+.+.-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999909899999998299
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.91 E-value=0.2 Score=23.28 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999991899976899999846
Q 000463 675 LTAIVGTVGSGKSSLLASILG 695 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilG 695 (1479)
.++++|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=87.82 E-value=0.12 Score=24.95 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999888999998505
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~rl 1318 (1479)
.|||+|++++|||||++.|.|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.78 E-value=0.37 Score=21.19 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999991899976899999846
Q 000463 675 LTAIVGTVGSGKSSLLASILG 695 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilG 695 (1479)
.++++|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=87.71 E-value=0.38 Score=21.09 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=24.1
Q ss_pred CCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3100149973895999991899976899999846
Q 000463 662 CLKNINLEIKKGDLTAIVGTVGSGKSSLLASILG 695 (1479)
Q Consensus 662 ~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilG 695 (1479)
.++.. +-.-.|.-+.++|++|+||||+...+..
T Consensus 4 ~lH~~-~v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGV-LVDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEE-EEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEE-EEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 28999-9999999999980899998999999998
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.60 E-value=0.23 Score=22.79 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|..|+|||||++.+.+.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999619
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=87.57 E-value=0.0081 Score=34.30 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=27.3
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 12211389838929999979999888999998505
Q 000463 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1284 vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~rl 1318 (1479)
..++.++.+.+| .+.|+|++||||||++.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 870279974998-0899889999879999999999
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=87.53 E-value=0.3 Score=21.88 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999979999888999998505
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~rl 1318 (1479)
=||.++|+.|+|||||++.|.+-
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHCCC
T ss_conf 79999999998999999998089
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=87.41 E-value=0.51 Score=20.13 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 895999991899976899999846844
Q 000463 672 KGDLTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 672 ~g~~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
...-+.+.||.|+|||++.+++..++.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 888678668998882289999999829
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=87.40 E-value=0.26 Score=22.41 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=40.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCCCCCCHH
Q ss_conf 38929999979999888999998505789862899969736998956661001787376654666576605999999999
Q 000463 1293 HGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDE 1372 (1479)
Q Consensus 1293 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~~~~sde 1372 (1479)
|+|-+|.|+|+.||||||+.+.|..-+ |-..|+--| -+|... ++..-..-.++..++-+....++
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~----g~~~i~~gd-------llr~~~----~~~~~~g~~~~~~~~~g~~~~~~ 65 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF----CVCHLATGD-------MLRAMV----ASGSELGKKLKATMDAGKLVSDE 65 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH----TCEEEEHHH-------HHHHHH----HHTCHHHHHHHHHHHTTCCCCHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHHH-------HHHHHH----HCCCCCCCHHHHHHCCCCCCCCC
T ss_conf 996389998999998899999999986----985775778-------899887----42674330233132167743330
Q ss_pred HHHHHHHH
Q ss_conf 99999998
Q 000463 1373 EIWKSLER 1380 (1479)
Q Consensus 1373 eI~~aL~~ 1380 (1479)
.+.+.+..
T Consensus 66 ~v~~~~~~ 73 (190)
T d1ak2a1 66 MVLELIEK 73 (190)
T ss_dssp HHHHHHHH
T ss_pred EEEEEEHH
T ss_conf 24531113
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.37 E-value=0.51 Score=20.12 Aligned_cols=44 Identities=11% Similarity=0.320 Sum_probs=33.7
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
Q ss_conf 997899837899999985999999999873794789971591356
Q 000463 1422 HSRLLFMDEATASVDSQTDAEIQRIIREEFAACTIISIAHRIPTV 1466 (1479)
Q Consensus 1422 ~~~ILiLDEaTsslD~~te~~Iq~~I~~~~~~~TvI~IAHRl~ti 1466 (1479)
+.+++++||+-. +..+....+.+.+.+...++.+|.++++.+-+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf 724999424333-45431112210022135664300010211100
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=87.34 E-value=0.21 Score=23.08 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999979999888999998505
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~rl 1318 (1479)
=||+|||++|+|||||++.+.+-
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 29999999998999999999679
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=87.30 E-value=0.23 Score=22.83 Aligned_cols=20 Identities=35% Similarity=0.669 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999189997689999984
Q 000463 675 LTAIVGTVGSGKSSLLASIL 694 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~il 694 (1479)
+++|+|..||||||..+.+-
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.26 E-value=0.26 Score=22.45 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=24.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 38959999918999768999998468446
Q 000463 671 KKGDLTAIVGTVGSGKSSLLASILGEMHK 699 (1479)
Q Consensus 671 ~~g~~~~ivG~~GsGKStLl~~ilGe~~~ 699 (1479)
++|.++++.|+-||||||+...|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=87.21 E-value=0.18 Score=23.60 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9299999799998889999985057
Q 000463 1295 GEKIGVVGRTGSGKSTLIQVFFRLV 1319 (1479)
Q Consensus 1295 GekvgIVGrTGSGKSTLl~~L~rl~ 1319 (1479)
.-.|+|-|..||||||+++.|.+-.
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6199988999988899999999870
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=87.08 E-value=0.14 Score=24.48 Aligned_cols=21 Identities=38% Similarity=0.705 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999979999888999998505
Q 000463 1298 IGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1298 vgIVGrTGSGKSTLl~~L~rl 1318 (1479)
|||+|++|+|||||++.|.+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=87.06 E-value=0.26 Score=22.39 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 38929999979999888999998505
Q 000463 1293 HGGEKIGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1293 ~~GekvgIVGrTGSGKSTLl~~L~rl 1318 (1479)
++.=||.+||+.|+|||||++.|.+-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.04 E-value=0.16 Score=23.98 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999799998889999985057
Q 000463 1298 IGVVGRTGSGKSTLIQVFFRLV 1319 (1479)
Q Consensus 1298 vgIVGrTGSGKSTLl~~L~rl~ 1319 (1479)
|.|+|||||||+||.+.|..-.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999999899999999748
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=86.91 E-value=0.22 Score=22.94 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299999799998889999985057
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFRLV 1319 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~rl~ 1319 (1479)
-+|.|+|+.||||||+.+.|..-+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 979898999999899999999997
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=86.91 E-value=0.27 Score=22.26 Aligned_cols=56 Identities=13% Similarity=0.159 Sum_probs=34.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCC--CCCCHHHHHHCCCC
Q ss_conf 895999991899976899999846844677489987958999046768--88858899733998
Q 000463 672 KGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWI--QNGTIEENILFGLP 733 (1479)
Q Consensus 672 ~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~~wi--~~~Ti~eNIlfg~~ 733 (1479)
+|.++++-|.-||||||+...|...+... |. ......++|+- ....+++....+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~-g~-----~~~~~~~ep~~~~~g~~i~~~~~~~~~ 58 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQL-GI-----RDMVFTREPGGTQLAEKLRSLLLDIKS 58 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHT-TC-----CCEEEEESSCSSHHHHHHHHHHHSTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHC-CC-----CEEEEECCCCCCCCHHHHHHHHHCCCC
T ss_conf 98789998998887999999999999967-99-----739983298996114455898846210
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.89 E-value=0.26 Score=22.45 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=31.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 9738959999918999768999998468446774899879589990467
Q 000463 669 EIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTS 717 (1479)
Q Consensus 669 ~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~~ 717 (1479)
-+++|+++.|.|+.|||||++...++...............+.|.....
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 81 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHH
T ss_conf 9768979999889988788999999999974443166662488740177
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=86.79 E-value=0.22 Score=22.92 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999988899999850
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFR 1317 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~r 1317 (1479)
||.++|+.|+|||||++.|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=86.77 E-value=0.26 Score=22.45 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|+.|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.72 E-value=0.28 Score=22.17 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999991899976899999846844
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
.++++|..|+|||||++.+.+.-.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.60 E-value=0.28 Score=22.13 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 892999997999988899999850578986289996
Q 000463 1294 GGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIID 1329 (1479)
Q Consensus 1294 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~ID 1329 (1479)
+...|.|+|+.||||||+.+.|..-+ |-+.|+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf 99489998999998899999999997----992672
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.55 E-value=0.24 Score=22.75 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|..|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.46 E-value=0.24 Score=22.69 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.++++|..|+|||||++.+.++-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999967899999998688
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.43 E-value=0.28 Score=22.19 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.++|+|..|+|||||++.+++..
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999939999999996299
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=86.43 E-value=0.28 Score=22.12 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999888999998505
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~rl 1318 (1479)
.|||+|+..||||||+++|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=86.40 E-value=0.29 Score=22.10 Aligned_cols=25 Identities=32% Similarity=0.314 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999991899976899999846844
Q 000463 674 DLTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 674 ~~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
-.++|-||.||||||..+.|.-.+.
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 5999789998798999999999969
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=86.24 E-value=0.3 Score=21.94 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999189997689999984684
Q 000463 676 TAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 676 ~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
+|++|.+.+|||||+++|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.23 E-value=0.29 Score=22.10 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|..|+|||||++.+++.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.18 E-value=0.3 Score=21.87 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.++|.|+.||||||....|.-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=86.16 E-value=0.3 Score=21.94 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.++++|+.||||||+...|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=86.15 E-value=0.27 Score=22.26 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999189997689999984684
Q 000463 676 TAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 676 ~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
++++|+.||||||+.+.+...+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.10 E-value=0.3 Score=21.93 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|..|+|||||++.+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=86.03 E-value=0.21 Score=23.19 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.+++.|+.||||||+...|.-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.98 E-value=0.28 Score=22.16 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999979999888999998505
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~rl 1318 (1479)
.||+++|++|+|||||++.|.+-
T Consensus 1 ~KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 1 GKLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999999999999999589
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=85.92 E-value=0.21 Score=23.15 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=28.9
Q ss_pred EEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 01499738959999918999768999998468446
Q 000463 665 NINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHK 699 (1479)
Q Consensus 665 ~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~ 699 (1479)
|.=+.+.+|+..+|.|+.|+|||+|+..|..-...
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~ 69 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 69 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 41256457875568679998878999999997751
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.89 E-value=0.31 Score=21.77 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.++|+|+.||||||+...|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.88 E-value=0.31 Score=21.79 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999991899976899999846
Q 000463 675 LTAIVGTVGSGKSSLLASILG 695 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilG 695 (1479)
.++++|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.88 E-value=0.3 Score=21.88 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=24.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3892999997999988899999850578
Q 000463 1293 HGGEKIGVVGRTGSGKSTLIQVFFRLVE 1320 (1479)
Q Consensus 1293 ~~GekvgIVGrTGSGKSTLl~~L~rl~e 1320 (1479)
++|-.|+|-|.-||||||+++.|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=85.87 E-value=0.16 Score=24.05 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9299999799998889999985057
Q 000463 1295 GEKIGVVGRTGSGKSTLIQVFFRLV 1319 (1479)
Q Consensus 1295 GekvgIVGrTGSGKSTLl~~L~rl~ 1319 (1479)
.=+|+|+|++++|||||+++|.+--
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=85.78 E-value=0.24 Score=22.74 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 5999991899976899999846844677489
Q 000463 674 DLTAIVGTVGSGKSSLLASILGEMHKISGKV 704 (1479)
Q Consensus 674 ~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v 704 (1479)
..+.|+|++|||||+++..++-..-...+.+
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~ 81 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRM 81 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 6589990799968999999999998479988
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.77 E-value=0.35 Score=21.35 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999918999768999998468446
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMHK 699 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~~ 699 (1479)
.++++|..|+|||||++.+.+....
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~~ 29 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHDS 29 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999998992999999999728677
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.69 E-value=0.35 Score=21.40 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=24.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 38959999918999768999998468446
Q 000463 671 KKGDLTAIVGTVGSGKSSLLASILGEMHK 699 (1479)
Q Consensus 671 ~~g~~~~ivG~~GsGKStLl~~ilGe~~~ 699 (1479)
.+|.++++-|.-||||||+.+.|.-.+..
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 97689999899888699999999999971
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.65 E-value=0.25 Score=22.50 Aligned_cols=46 Identities=28% Similarity=0.360 Sum_probs=29.4
Q ss_pred EEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 72389806999964310014997389599999189997689999984684
Q 000463 648 RDGVFSWDDENGEECLKNINLEIKKGDLTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 648 ~~~~f~w~~~~~~~~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
+++.+..+++. -..|+.++ .|=.+++|+|+.++|||+||+.+.|..
T Consensus 11 ~~~~l~~~~e~-l~~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 11 TNGRLMANPEA-LKILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp ETTEEEECHHH-HHHHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCCEEEECHHH-HHHHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99949989999-99997079---987999988999997999999980998
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.58 E-value=0.33 Score=21.61 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999991899976899999846
Q 000463 675 LTAIVGTVGSGKSSLLASILG 695 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilG 695 (1479)
.++++|..|+|||||++.+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=85.58 E-value=0.3 Score=21.94 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799998889999985057
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFRLV 1319 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~rl~ 1319 (1479)
.|||+|...+|||||+++|.+..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=85.53 E-value=0.51 Score=20.10 Aligned_cols=33 Identities=27% Similarity=0.235 Sum_probs=22.7
Q ss_pred CCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3100149973895999991899976899999846
Q 000463 662 CLKNINLEIKKGDLTAIVGTVGSGKSSLLASILG 695 (1479)
Q Consensus 662 ~L~~i~l~i~~g~~~~ivG~~GsGKStLl~~ilG 695 (1479)
.++. ++-.-.|.=+.++|++|+||||+...++.
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 4889-99999999999980899999999999998
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.44 E-value=0.15 Score=24.20 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999997999988899999850578
Q 000463 1294 GGEKIGVVGRTGSGKSTLIQVFFRLVE 1320 (1479)
Q Consensus 1294 ~GekvgIVGrTGSGKSTLl~~L~rl~e 1320 (1479)
.|-.|-++|.+||||||+.+.|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=85.40 E-value=0.45 Score=20.50 Aligned_cols=154 Identities=14% Similarity=0.133 Sum_probs=69.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHH-HCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCCCCC
Q ss_conf 9838929999979999888999998-505789862899969736998956661001787376654666576605999999
Q 000463 1291 SIHGGEKIGVVGRTGSGKSTLIQVF-FRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQY 1369 (1479)
Q Consensus 1291 ~I~~GekvgIVGrTGSGKSTLl~~L-~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~~~~ 1369 (1479)
-+++|+.+-|.|++|+|||++..-+ ..........+++... ..+....+... .-++ .
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~---e~~~~~~~~~~------------------~~~~-~ 79 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF---EETPQDIIKNA------------------RSFG-W 79 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES---SSCHHHHHHHH------------------GGGT-C
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCC---CCCHHHHHHHH------------------HHCC-C
T ss_conf 996983999994799999999999999999856887420126---67999999999------------------9849-9
Q ss_pred CHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHCC--CCCEEEEECCCCCCCH----HHH-H
Q ss_conf 999999999984953899719487530001899988905-9999999998616--9978998378999999----859-9
Q 000463 1370 SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVG-QRQLLCLGRVMLK--HSRLLFMDEATASVDS----QTD-A 1441 (1479)
Q Consensus 1370 sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgG-QrQll~LARALLr--~~~ILiLDEaTsslD~----~te-~ 1441 (1479)
..++..+ .-... .. ......+.-..+... ...++.-.+..++ +++++++|--++-.+. ... .
T Consensus 80 ~~~~~~~---~~~~~-~~------~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~~~ 149 (242)
T d1tf7a1 80 DLAKLVD---EGKLF-IL------DASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRR 149 (242)
T ss_dssp CHHHHHH---TTSEE-EE------ECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHH
T ss_pred CHHHHHH---HCCHH-HH------HHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 8489887---14302-44------42103354444302458999999999988631222002078899876057267899
Q ss_pred HHHHHHHHH-CCCCEEEEECCCHHH---------HH-HCCEEEEEE
Q ss_conf 999999987-379478997159135---------63-019799980
Q 000463 1442 EIQRIIREE-FAACTIISIAHRIPT---------VM-DCDRVIVVD 1476 (1479)
Q Consensus 1442 ~Iq~~I~~~-~~~~TvI~IAHRl~t---------i~-~~DrIlVLd 1476 (1479)
.+...++.. ..++|++.++|.... .. .+|.|+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 150 ELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 9999999998639716884210255422246762335362999988
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.32 E-value=0.3 Score=21.97 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.32 E-value=0.21 Score=23.11 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999997999988899999850578
Q 000463 1294 GGEKIGVVGRTGSGKSTLIQVFFRLVE 1320 (1479)
Q Consensus 1294 ~GekvgIVGrTGSGKSTLl~~L~rl~e 1320 (1479)
++..|+|-|..||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=85.21 E-value=0.27 Score=22.34 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=10.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999997999988899999850
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFR 1317 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~r 1317 (1479)
-+|||.|+-|||||||+..|.+
T Consensus 52 ~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 5986117998889999999999
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.20 E-value=0.64 Score=19.32 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 59999918999768999998468446
Q 000463 674 DLTAIVGTVGSGKSSLLASILGEMHK 699 (1479)
Q Consensus 674 ~~~~ivG~~GsGKStLl~~ilGe~~~ 699 (1479)
.-..+.|+.|+||+|+...++.++..
T Consensus 25 h~lLl~Gp~G~GKtt~a~~~a~~l~~ 50 (207)
T d1a5ta2 25 HALLIQALPGMGDDALIYALSRYLLC 50 (207)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 37988899987599999999982101
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=85.17 E-value=0.29 Score=22.03 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=19.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 599999189997689999984684
Q 000463 674 DLTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 674 ~~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
+.+.++|+.||||||+.+.+.-.+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.11 E-value=0.31 Score=21.83 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999799998889999985057
Q 000463 1298 IGVVGRTGSGKSTLIQVFFRLV 1319 (1479)
Q Consensus 1298 vgIVGrTGSGKSTLl~~L~rl~ 1319 (1479)
|.|+||+||||+||.+.|..-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.01 E-value=0.65 Score=19.25 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=17.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 389299999799998889999985057
Q 000463 1293 HGGEKIGVVGRTGSGKSTLIQVFFRLV 1319 (1479)
Q Consensus 1293 ~~GekvgIVGrTGSGKSTLl~~L~rl~ 1319 (1479)
++..-+=+.|+.|+|||++++++.+-.
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 988757887899876304778878771
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.90 E-value=0.36 Score=21.29 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|..|+|||||++.+++.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=84.74 E-value=0.34 Score=21.52 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999991899976899999846844
Q 000463 674 DLTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 674 ~~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
.-+.++||+|+|||.|.+++..++.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 6699989999888899999862132
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=84.73 E-value=0.38 Score=21.11 Aligned_cols=44 Identities=27% Similarity=0.305 Sum_probs=31.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC
Q ss_conf 89299999799998889999985057898628999697369989
Q 000463 1294 GGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLG 1337 (1479)
Q Consensus 1294 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~ 1337 (1479)
.+..+.+||+||+||||.+.=|...+.-.+-++.+=..|....+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~g 48 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAA 48 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 97799998999998899999999999977990799981366654
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=84.71 E-value=0.21 Score=23.11 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 59999918999768999998468
Q 000463 674 DLTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 674 ~~~~ivG~~GsGKStLl~~ilGe 696 (1479)
-.++++|..|+|||||++.+.+.
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89999999999889999887338
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.66 E-value=0.34 Score=21.51 Aligned_cols=22 Identities=32% Similarity=0.444 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|..|+|||||++.+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=84.65 E-value=0.68 Score=19.14 Aligned_cols=100 Identities=29% Similarity=0.378 Sum_probs=55.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHC
Q ss_conf 99991899976899999846844677489987958999046768888588997339989942299999984329999743
Q 000463 676 TAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQTSWIQNGTIEENILFGLPMNRAKYGEVVRVCCLEKDLEMM 755 (1479)
Q Consensus 676 ~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~~wi~~~Ti~eNIlfg~~~~~~~y~~v~~~c~L~~dl~~l 755 (1479)
+.+.|+.|+|||-|++++.-+.....- .+.|++ ..+.. ..+.+.+..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~~~~------~~~~~~---------~~~~~--------~~~~~~~~~---------- 85 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKKRGY------RVIYSS---------ADDFA--------QAMVEHLKK---------- 85 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHTTC------CEEEEE---------HHHHH--------HHHHHHHHH----------
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCC------CEEEEC---------HHHHH--------HHHHHHHHC----------
T ss_conf 799888998399999999987446765------048844---------37879--------999999871----------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHH-CCCCEEEEECCCC
Q ss_conf 468863135698866668999999999981299899980766788-9656999999999563-1996999980487
Q 000463 756 EYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAV-DAHTGSDIFKECVRGA-LKGKTIILVTHQV 829 (1479)
Q Consensus 756 ~~Gd~t~ige~g~~LSGGQkqRi~LARAly~~~~i~lLDdp~sal-D~~~~~~i~~~~~~~~-l~~kTvilvTh~~ 829 (1479)
+ + ..-.+..+.++|++++||.=.-- +......+|+ ++... ..++.+|+.+...
T Consensus 86 --~---------------~---~~~~~~~~~~~dll~iDDi~~i~~~~~~~~~lf~-lin~~~~~~~~iiits~~~ 140 (213)
T d1l8qa2 86 --G---------------T---INEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFH-IFNTLYLLEKQIILASDRH 140 (213)
T ss_dssp --T---------------C---HHHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHH-HHHHHHHTTCEEEEEESSC
T ss_pred --C---------------C---HHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH-HHHHHHHCCCEEEEECCCC
T ss_conf --6---------------6---2667898762130101126550586577889999-9998763166389954875
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.62 E-value=0.33 Score=21.57 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|..|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=84.60 E-value=0.4 Score=20.91 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999918999768999998468446
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMHK 699 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~~ 699 (1479)
-++|+|.+.+|||||+..|+|....
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~~ 34 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWTS 34 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC-
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCH
T ss_conf 8999972488699999999704121
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.57 E-value=0.45 Score=20.53 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=25.2
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 122113898389299999799998889999985
Q 000463 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFF 1316 (1479)
Q Consensus 1284 vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~ 1316 (1479)
+|.| -+++|+.+-|.|++|+||||+..-+.
T Consensus 26 ll~G---Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 26 LLGG---GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp HHTS---SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred HHCC---CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 3179---98699699998389998899999999
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=84.56 E-value=0.48 Score=20.30 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=24.9
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7389599999189997689999984684
Q 000463 670 IKKGDLTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 670 i~~g~~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
+++|+++.|.|+.|+|||++..-++-..
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6288599999179999899999999999
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.50 E-value=0.3 Score=21.88 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999997999988899999850
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFR 1317 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~r 1317 (1479)
..|+|+|+.|+|||||++.|.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 9899999999898999999980
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.49 E-value=0.69 Score=19.09 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|..|+|||||++.+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=84.41 E-value=0.41 Score=20.86 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=23.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9738959999918999768999998468446
Q 000463 669 EIKKGDLTAIVGTVGSGKSSLLASILGEMHK 699 (1479)
Q Consensus 669 ~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~ 699 (1479)
..++|.++++.|+.|||||||.+.++..+..
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.24 E-value=0.7 Score=19.01 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999991899976899999846
Q 000463 675 LTAIVGTVGSGKSSLLASILG 695 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilG 695 (1479)
.++++|..|+|||||++.++.
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=84.23 E-value=0.38 Score=21.10 Aligned_cols=21 Identities=38% Similarity=0.730 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999988899999850
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFR 1317 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~r 1317 (1479)
.|||.|..||||||+.+.|-.
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.15 E-value=0.36 Score=21.31 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++|+|..|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.15 E-value=0.41 Score=20.87 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|..|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=84.15 E-value=0.37 Score=21.20 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.++++|+.||||||....|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=84.07 E-value=0.42 Score=20.78 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999997999988899999850578
Q 000463 1294 GGEKIGVVGRTGSGKSTLIQVFFRLVE 1320 (1479)
Q Consensus 1294 ~GekvgIVGrTGSGKSTLl~~L~rl~e 1320 (1479)
+|..|.|-|.-||||||++..|...++
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=84.06 E-value=0.47 Score=20.39 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89599999189997689999984684
Q 000463 672 KGDLTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 672 ~g~~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.+..+.|.|+.|+|||||+..++-+.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=84.06 E-value=0.28 Score=22.12 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 59999918999768999998468446
Q 000463 674 DLTAIVGTVGSGKSSLLASILGEMHK 699 (1479)
Q Consensus 674 ~~~~ivG~~GsGKStLl~~ilGe~~~ 699 (1479)
++++|.|..||||||+.+.|...+..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.04 E-value=0.72 Score=18.95 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=23.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCEEE
Q ss_conf 999997999988899999850-----5789862899
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFR-----LVEPSGGRII 1327 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~r-----l~ep~~G~I~ 1327 (1479)
||.++|..|+|||||++.+.. -++|+.|...
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~ 42 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY 42 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCE
T ss_conf 899999999799999999973998854576645200
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.00 E-value=0.42 Score=20.78 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=83.97 E-value=0.42 Score=20.75 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 5999991899976899999846
Q 000463 674 DLTAIVGTVGSGKSSLLASILG 695 (1479)
Q Consensus 674 ~~~~ivG~~GsGKStLl~~ilG 695 (1479)
.+++|+|..||||||..+.+..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.97 E-value=0.42 Score=20.77 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.++++|..|+|||||++.+.+.-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989908899999997199
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.96 E-value=0.37 Score=21.21 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|..|+|||||++.+.+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990999999999709
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.95 E-value=0.72 Score=18.92 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999997999988899999850-----5789862
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFR-----LVEPSGG 1324 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~r-----l~ep~~G 1324 (1479)
||.++|.+|+|||||++.+.+ -+.|+-|
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~ 36 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE 36 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 899999899798999999970999876376133
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=83.82 E-value=0.4 Score=20.96 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999979999888999998505
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~rl 1318 (1479)
-.|||.|..||||||+.+.|-.+
T Consensus 4 ~IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 89999898877899999999987
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.76 E-value=0.43 Score=20.66 Aligned_cols=74 Identities=20% Similarity=0.366 Sum_probs=42.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCC-CCCCCH-
Q ss_conf 892999997999988899999850578986289996973699895666100178737665466657660599-999999-
Q 000463 1294 GGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDP-IGQYSD- 1371 (1479)
Q Consensus 1294 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp-~~~~sd- 1371 (1479)
+|..|+|-|.-||||||+++.|....+. .|... -.|..+..+..-||+.+.. ....++
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~~~-------------------~~p~~~~~~g~~ir~~l~~~~~~~~~~ 61 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCKLL-------------------KFPERSTRIGGLINEYLTDDSFQLSDQ 61 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEEEE-------------------ESSCTTSHHHHHHHHHHHCTTCCCCHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH-CCEEE-------------------EECCCCCHHHHHHHHHHHHCCCCCCCH
T ss_conf 7689999899888699999999999971-97799-------------------978999607676777654002345616
Q ss_pred -HHHHHHHHHCCCHHHH
Q ss_conf -9999999984953899
Q 000463 1372 -EEIWKSLERCQLKDVV 1387 (1479)
Q Consensus 1372 -eeI~~aL~~~~L~~~i 1387 (1479)
+.+.-++.+.+..+.+
T Consensus 62 ~~~llf~a~r~~~~~~i 78 (214)
T d1tmka_ 62 AIHLLFSANRWEIVDKI 78 (214)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 77888888889998877
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=83.70 E-value=0.38 Score=21.09 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299999799998889999985057
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFRLV 1319 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~rl~ 1319 (1479)
..|-++|++||||||+.+.|..-+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 749998999999999999999996
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=83.68 E-value=0.46 Score=20.48 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=33.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECC
Q ss_conf 973895999991899976899999846844677489987958999046
Q 000463 669 EIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVKVCGTTAYVAQT 716 (1479)
Q Consensus 669 ~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~ 716 (1479)
-+++|.++.+.|+.|||||++...++....+..| .+.|+.-+
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~------~~vyidtE 91 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK------TCAFIDAE 91 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC------CEEEEESS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC------EEEEECCC
T ss_conf 9667358998057774789999999999870898------79998654
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.67 E-value=0.44 Score=20.61 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999991899976899999846
Q 000463 675 LTAIVGTVGSGKSSLLASILG 695 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilG 695 (1479)
.++++|..|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.40 E-value=0.46 Score=20.43 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|..|+|||||++.+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.34 E-value=0.45 Score=20.50 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999997999988899999850578
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFRLVE 1320 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~rl~e 1320 (1479)
-.|.++|+.||||||+.+.|.+.+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.31 E-value=0.25 Score=22.51 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|..|+|||||++.+++.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.31 E-value=0.26 Score=22.39 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.30 E-value=0.33 Score=21.57 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999189997689999984684
Q 000463 676 TAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 676 ~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
++++|..||||||+.+.+...+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.11 E-value=0.42 Score=20.77 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++|+|+.|+|||||++.+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=83.11 E-value=0.38 Score=21.10 Aligned_cols=117 Identities=21% Similarity=0.205 Sum_probs=69.0
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCCCCCCH
Q ss_conf 83892999997999988899999850578986289996973699895666100178737665466657660599999999
Q 000463 1292 IHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSD 1371 (1479)
Q Consensus 1292 I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~~~~sd 1371 (1479)
++.+..|-|+|+.||||||+.+.|..-+ |-..|+.-| -+|..+. ..+ ...-.+.+.++.....+|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~-------llr~~~~---~~~-~~~~~~~~~~~~~~~~~~ 69 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGD-------LLRAEVS---SGS-ARGKMLSEIMEKGQLVPL 69 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHH-------HHHHHHH---HTC-HHHHHHHHHHTTTCCCCH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEECCH-------HHHHHHH---HHH-HHHHHHHHHHHHCCCCCH
T ss_conf 4678289998999998799999999986----984683347-------8999998---767-651456777763137762
Q ss_pred HHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999999998495389971948753000189998890599999999986169978998378
Q 000463 1372 EEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEA 1431 (1479)
Q Consensus 1372 eeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~LARALLr~~~ILiLDEa 1431 (1479)
+.+.+.+... +...+...+..+-++ +.....|.-.+.+.+.....++.+|.+
T Consensus 70 ~~~~~~~~~~-----l~~~~~~~~g~ildg---~pr~~~qa~~~~~~~~~~~~~~~~~~~ 121 (194)
T d3adka_ 70 ETVLDMLRDA-----MVAKVDTSKGFLIDG---YPREVKQGEEFERKIGQPTLLLYVDAG 121 (194)
T ss_dssp HHHHHHHHHH-----HHTTTTTCSCEEEES---CCSSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HEEEEEHHHH-----HHHCCCCCCCCEEEE---CCCHHHHHHHHHHHHCCCCCHHCCCCC
T ss_conf 2244102456-----640322356602431---110157899999983775200003331
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=83.09 E-value=0.58 Score=19.65 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 983892999997999988899999850
Q 000463 1291 SIHGGEKIGVVGRTGSGKSTLIQVFFR 1317 (1479)
Q Consensus 1291 ~I~~GekvgIVGrTGSGKSTLl~~L~r 1317 (1479)
-+++|+.+-|.|++|+|||++..-+.-
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 862885999991799998999999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=83.04 E-value=0.48 Score=20.31 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 92999997999988899999850
Q 000463 1295 GEKIGVVGRTGSGKSTLIQVFFR 1317 (1479)
Q Consensus 1295 GekvgIVGrTGSGKSTLl~~L~r 1317 (1479)
.=||.+||+.|+|||||++.+.+
T Consensus 16 ~~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 16 EVRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHC
T ss_conf 77999999999899999999964
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.99 E-value=0.7 Score=19.03 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999918999768999998468446774
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMHKISG 702 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~~~~G 702 (1479)
.++++|..|+|||||++-+.....++.|
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~ 31 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTG 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 9999999998889999988408979724
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.96 E-value=0.46 Score=20.48 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999988899999850
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFR 1317 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~r 1317 (1479)
||.+||..|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.92 E-value=0.56 Score=19.78 Aligned_cols=21 Identities=29% Similarity=0.700 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999988899999850
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFR 1317 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~r 1317 (1479)
||.+||+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=82.90 E-value=0.49 Score=20.26 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=15.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8929999979999888999998505
Q 000463 1294 GGEKIGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1294 ~GekvgIVGrTGSGKSTLl~~L~rl 1318 (1479)
.+..+.|+|+.|+|||||+..+.+-
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 5987999869998299999999997
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=82.84 E-value=0.53 Score=20.00 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999991899976899999846844
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMH 698 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~ 698 (1479)
.++|-||.||||+|.-+.|...+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.81 E-value=0.55 Score=19.84 Aligned_cols=21 Identities=43% Similarity=0.767 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999988899999850
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFR 1317 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~r 1317 (1479)
|+.+||..|+|||||++.+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=82.75 E-value=0.44 Score=20.60 Aligned_cols=32 Identities=34% Similarity=0.572 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999979999888999998505789862899969
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDG 1330 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1330 (1479)
-+-++|++|+||||+.++|.+-.. .+-+.+++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--CCEEEEEC
T ss_conf 999889799889999999999865--15489832
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.65 E-value=0.58 Score=19.66 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=25.9
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1221138983892999997999988899999850
Q 000463 1284 VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFR 1317 (1479)
Q Consensus 1284 vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~r 1317 (1479)
.|.| -|++|..+-|.|++|+|||++...+..
T Consensus 29 ~lgG---Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 29 LLGG---GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp HTTS---SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred HHCC---CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3169---976897999988998878899999999
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.63 E-value=0.5 Score=20.15 Aligned_cols=23 Identities=30% Similarity=0.206 Sum_probs=18.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999979999888999998505
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~rl 1318 (1479)
=.|||-|.+|||||||...|...
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89983799878899999999999
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=82.62 E-value=0.47 Score=20.40 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=27.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC----EEEEEECC
Q ss_conf 9999918999768999998468446774899879----58999046
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMHKISGKVKVCG----TTAYVAQT 716 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g----~iayv~Q~ 716 (1479)
=+.++||+|||||-|.+.|.+++.. --+.+++ .+|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V--PFv~~daT~fTeaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFTEVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGGGC----CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC--CEEEEECCEEEECCEEECC
T ss_conf 4799899998899999999987389--8898625511411111044
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=82.61 E-value=0.62 Score=19.42 Aligned_cols=31 Identities=32% Similarity=0.441 Sum_probs=25.0
Q ss_pred CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 5122113898389299999799998889999985
Q 000463 1283 LVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFF 1316 (1479)
Q Consensus 1283 ~vL~~isl~I~~GekvgIVGrTGSGKSTLl~~L~ 1316 (1479)
..|.| -+++|+.+-|.|++|+||||+..-+.
T Consensus 27 ~ll~G---Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 27 KLLGG---GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp HHHTS---SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHCC---CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 74269---95588799998589898899999999
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=82.60 E-value=0.81 Score=18.53 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=24.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 959999918999768999998468446774
Q 000463 673 GDLTAIVGTVGSGKSSLLASILGEMHKISG 702 (1479)
Q Consensus 673 g~~~~ivG~~GsGKStLl~~ilGe~~~~~G 702 (1479)
...+.+.|+.|+|||++++.++..+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.49 E-value=0.48 Score=20.29 Aligned_cols=21 Identities=29% Similarity=0.700 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999988899999850
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFR 1317 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~r 1317 (1479)
||.++|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=82.32 E-value=0.82 Score=18.46 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=24.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECC
Q ss_conf 389299999799998889999985057898628999697369
Q 000463 1293 HGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDIS 1334 (1479)
Q Consensus 1293 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~ 1334 (1479)
++...+-+.||.|+|||++++++.+-.... -+.+++-++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~l~ 82 (256)
T d1lv7a_ 43 KIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFV 82 (256)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSST
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEHHHHH
T ss_conf 988867866899888228999999982998--7998869942
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=82.32 E-value=0.5 Score=20.21 Aligned_cols=42 Identities=24% Similarity=0.326 Sum_probs=33.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEE
Q ss_conf 9838929999979999888999998505789862-89996973
Q 000463 1291 SIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGG-RIIIDGID 1332 (1479)
Q Consensus 1291 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G-~I~IDG~d 1332 (1479)
-+++|..+-|.|++|+||||+...+..-..-.+| -++||...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9667358998057774789999999999870898799986544
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.19 E-value=0.58 Score=19.69 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.+++.|+.||||||+...|.-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.09 E-value=0.84 Score=18.40 Aligned_cols=47 Identities=11% Similarity=0.086 Sum_probs=31.0
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHC--CCCEEEEECCCHHHH
Q ss_conf 1699789983789999998599999-9999873--794789971591356
Q 000463 1420 LKHSRLLFMDEATASVDSQTDAEIQ-RIIREEF--AACTIISIAHRIPTV 1466 (1479)
Q Consensus 1420 Lr~~~ILiLDEaTsslD~~te~~Iq-~~I~~~~--~~~TvI~IAHRl~ti 1466 (1479)
..+..++++||.-.+=|++.-..+- ..++... .++.+++.+|-....
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 54660885322235877456667898764543204544289852468776
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.01 E-value=0.52 Score=20.05 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|..|+|||||++.+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.95 E-value=0.65 Score=19.30 Aligned_cols=28 Identities=36% Similarity=0.471 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CCCCCC
Q ss_conf 9999979999888999998505-----789862
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFRL-----VEPSGG 1324 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~rl-----~ep~~G 1324 (1479)
||.++|..|+|||||++.+..= ++|..|
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~ 37 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE 37 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999799899999999980988986577410
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=81.93 E-value=0.73 Score=18.89 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=27.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9838929999979999888999998505789
Q 000463 1291 SIHGGEKIGVVGRTGSGKSTLIQVFFRLVEP 1321 (1479)
Q Consensus 1291 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep 1321 (1479)
..+||..|.+.|.=||||||+++.+.+-...
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.92 E-value=0.47 Score=20.42 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999918999768999998468446
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMHK 699 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~~ 699 (1479)
.+.+.||.|+||||+..++..++..
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 4999879999888999999999875
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.80 E-value=0.46 Score=20.43 Aligned_cols=41 Identities=22% Similarity=0.424 Sum_probs=30.7
Q ss_pred EEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 01499738959999918999768999998468446774899
Q 000463 665 NINLEIKKGDLTAIVGTVGSGKSSLLASILGEMHKISGKVK 705 (1479)
Q Consensus 665 ~i~l~i~~g~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~ 705 (1479)
|.-+.+.+||..+|.|+.|+|||+|+..+.--..+....+.
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~ 100 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 100 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEE
T ss_pred EEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEE
T ss_conf 10256367887776679998989999999998876179969
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.75 E-value=0.53 Score=19.98 Aligned_cols=21 Identities=43% Similarity=0.689 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999988899999850
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFR 1317 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~r 1317 (1479)
||.++|..|+|||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999678999999986
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=81.69 E-value=0.26 Score=22.36 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999988899999850578
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFRLVE 1320 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~rl~e 1320 (1479)
.|||.|.|||||||+.+.|.....
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989997809999999999971
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=81.61 E-value=0.61 Score=19.47 Aligned_cols=42 Identities=29% Similarity=0.280 Sum_probs=31.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC-CC-CCCEEEECCEECC
Q ss_conf 389299999799998889999985057-89-8628999697369
Q 000463 1293 HGGEKIGVVGRTGSGKSTLIQVFFRLV-EP-SGGRIIIDGIDIS 1334 (1479)
Q Consensus 1293 ~~GekvgIVGrTGSGKSTLl~~L~rl~-ep-~~G~I~IDG~dI~ 1334 (1479)
++|..|-+.|.+||||||+.+.|..-. +. .--.+.+||-++.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHH
T ss_conf 99869999899999989999999988777427508997536788
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=81.55 E-value=0.47 Score=20.41 Aligned_cols=121 Identities=16% Similarity=0.143 Sum_probs=54.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHCCEEEECCC-CCCCCCCHHHHC-C-CCCC-C
Q ss_conf 2999997999988899999850578--9862899969736998956661001787376-654666576605-9-9999-9
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFRLVE--PSGGRIIIDGIDISLLGLHDLRSRFGIIPQE-PVLFEGTVRSNI-D-PIGQ-Y 1369 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~rl~e--p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQd-p~LF~GTIR~NL-d-p~~~-~ 1369 (1479)
=.|||+|+.++|||||+..|+.... ...|++. ++... +....+-.+.+++=... ++-+++. +-|+ | |+.. +
T Consensus 4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~-~~~~~-d~~~eE~~rgiTi~~~~~~~~~~~~-~i~iiDtPGh~df 80 (204)
T d2c78a3 4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVK-DYGDI-DKAPEERARGITINTAHVEYETAKR-HYSHVDCPGHADY 80 (204)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCC-CHHHH-SCSHHHHHHTCCCSCEEEEEECSSC-EEEEEECCCSGGG
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHH-HHHHC-CCCHHHHCCCEEEEEEEEEEEECCE-EEEEEECCCCHHH
T ss_conf 1999994789849999999999852304774113-54311-3455775587579843799970881-8999828982654
Q ss_pred CHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEE----EECCC
Q ss_conf 9999999999849538997194875300018999889059999999998616997899----83789
Q 000463 1370 SDEEIWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLF----MDEAT 1432 (1479)
Q Consensus 1370 sdeeI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~LARALLr~~~ILi----LDEaT 1432 (1479)
. .+...++..+...=.| -+.-+.+..+-++-+-+|+.+ .-|++++ +|-..
T Consensus 81 ~-~~~~~~~~~aD~avlV-----------vda~~Gv~~qt~~~~~~~~~~-gi~~iiv~iNK~D~~~ 134 (204)
T d2c78a3 81 I-KNMITGAAQMDGAILV-----------VSAADGPMPQTREHILLARQV-GVPYIVVFMNKVDMVD 134 (204)
T ss_dssp H-HHHHHHHTTCSSEEEE-----------EETTTCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGCC
T ss_pred H-HHHHHHHHHCCEEEEE-----------EECCCCCCHHHHHHHHHHHHC-CCCEEEEEEEECCCCC
T ss_conf 9-9999999878999999-----------989999847899999999985-9993899998536679
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=81.55 E-value=0.49 Score=20.25 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999991899976899999846
Q 000463 675 LTAIVGTVGSGKSSLLASILG 695 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilG 695 (1479)
-++|+|++|||||||..+++-
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~ 28 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILY 28 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999995898998999999999
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.51 E-value=0.59 Score=19.63 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=62.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCCCCCCHHH
Q ss_conf 89299999799998889999985057898628999697369989566610017873766546665766059999999999
Q 000463 1294 GGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDGIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 1373 (1479)
Q Consensus 1294 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~GTIR~NLdp~~~~sdee 1373 (1479)
+-..|.|+|+.||||||+...|..-+ |-+.|+.-| -+|+.+ .+...-....+++-.+......|..
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~gd-------l~R~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 72 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAGD-------LLRAEQ---GRAGSQYGELIKNCIKEGQIVPQEI 72 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHHH-------HHHHHH---HSTTCSCHHHHHHHHHTTCCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHHH-------HHHHHH---HHCCCHHHHHHHHHHHCCCCCCCHH
T ss_conf 97289998999999899999999985----990885358-------999886---2010178899887640000232036
Q ss_pred HHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9999998495389971948753000189998890599999999986169978998378
Q 000463 1374 IWKSLERCQLKDVVAAKPDKLDSLVADSGDNWSVGQRQLLCLGRVMLKHSRLLFMDEA 1431 (1479)
Q Consensus 1374 I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLSgGQrQll~LARALLr~~~ILiLDEa 1431 (1479)
+...+...-...... .-+..+-++ +-....|...+.+.+.....++.||=+
T Consensus 73 ~~~~~~~~~~~~~~~----~~~~~vl~g---~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 73 TLALLRNAISDNVKA----NKHKFLIDG---FPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp HHHHHHHHHHHHHHT----TCCEEEEET---CCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHHCC----CCCCEEEEC---CCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 789999998864003----777535404---313689999999861545543125798
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.42 E-value=0.7 Score=19.02 Aligned_cols=21 Identities=43% Similarity=0.620 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999988899999850
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFR 1317 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~r 1317 (1479)
||.+||..|+|||||++.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=81.29 E-value=0.79 Score=18.62 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=15.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299999799998889999985057
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFRLV 1319 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~rl~ 1319 (1479)
-+++|||..-+|||||++.|.+--
T Consensus 113 ~~v~vvG~PNvGKSsliN~L~~~~ 136 (273)
T d1puja_ 113 IRALIIGIPNVGKSTLINRLAKKN 136 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEEEECCCCCHHHHHHHHHCCC
T ss_conf 278998667544355542542661
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.28 E-value=0.68 Score=19.13 Aligned_cols=21 Identities=43% Similarity=0.608 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999988899999850
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFR 1317 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~r 1317 (1479)
||.+||..|+|||||++.+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999399999999962
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.09 E-value=0.63 Score=19.39 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999918999768999998468
Q 000463 675 LTAIVGTVGSGKSSLLASILGE 696 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe 696 (1479)
.++++|..|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=80.99 E-value=0.6 Score=19.57 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979999888999998505
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFRL 1318 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~rl 1318 (1479)
.|||+|..||||||..+.|..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=80.83 E-value=0.58 Score=19.68 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999988899999850578
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFRLVE 1320 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~rl~e 1320 (1479)
.+.|.|..||||||+++.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989899898999999999998
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.82 E-value=0.57 Score=19.71 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999189997689999984684
Q 000463 675 LTAIVGTVGSGKSSLLASILGEM 697 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~ 697 (1479)
.++++|..|+|||||++.+.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.74 E-value=0.61 Score=19.50 Aligned_cols=21 Identities=43% Similarity=0.675 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999988899999850
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFR 1317 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~r 1317 (1479)
||.++|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.64 E-value=0.66 Score=19.21 Aligned_cols=25 Identities=36% Similarity=0.606 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999918999768999998468446
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMHK 699 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~~ 699 (1479)
+++|.|..||||||++..|...+..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999899878999999999999987
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.61 E-value=0.66 Score=19.23 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=14.4
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999918999768999998
Q 000463 675 LTAIVGTVGSGKSSLLASI 693 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~i 693 (1479)
.+.++|..|+|||||++-+
T Consensus 4 KivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999989999989999988
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.58 E-value=0.72 Score=18.90 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799998889999985057
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFRLV 1319 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~rl~ 1319 (1479)
||.++|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.43 E-value=0.68 Score=19.10 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999988899999850578
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFRLVE 1320 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~rl~e 1320 (1479)
.|+|-|.-||||||+++.|...++
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.38 E-value=0.8 Score=18.57 Aligned_cols=38 Identities=29% Similarity=0.501 Sum_probs=27.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHC-----CCCCCCCE-----EEECCEEC
Q ss_conf 2999997999988899999850-----57898628-----99969736
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFR-----LVEPSGGR-----IIIDGIDI 1333 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~r-----l~ep~~G~-----I~IDG~dI 1333 (1479)
-||.++|..|+|||||++.+.. -+.|+.|. +.+||.++
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~ 52 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY 52 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEEE
T ss_conf 389999989929899999997198885447542113103883176798
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.36 E-value=0.95 Score=17.97 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799998889999985057
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFRLV 1319 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~rl~ 1319 (1479)
||.++|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=80.27 E-value=0.81 Score=18.51 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=23.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3892999997999988899999850578
Q 000463 1293 HGGEKIGVVGRTGSGKSTLIQVFFRLVE 1320 (1479)
Q Consensus 1293 ~~GekvgIVGrTGSGKSTLl~~L~rl~e 1320 (1479)
+|.=.|||+|...+|||||+..|.+...
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9970899997248869999999970412
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=80.25 E-value=0.57 Score=19.70 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 999991899976899999846844677
Q 000463 675 LTAIVGTVGSGKSSLLASILGEMHKIS 701 (1479)
Q Consensus 675 ~~~ivG~~GsGKStLl~~ilGe~~~~~ 701 (1479)
.+.+.||.|+||||+.+++..++....
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~ 63 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNI 63 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 489879999738899999985038885
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.16 E-value=0.81 Score=18.50 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999997999988899999850
Q 000463 1296 EKIGVVGRTGSGKSTLIQVFFR 1317 (1479)
Q Consensus 1296 ekvgIVGrTGSGKSTLl~~L~r 1317 (1479)
=||.++|..|+|||||++.+.+
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 2899999899088999999971
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.15 E-value=0.83 Score=18.44 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999988899999850
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFR 1317 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~r 1317 (1479)
||.++|..|+|||||++.+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.06 E-value=0.85 Score=18.36 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999988899999850
Q 000463 1297 KIGVVGRTGSGKSTLIQVFFR 1317 (1479)
Q Consensus 1297 kvgIVGrTGSGKSTLl~~L~r 1317 (1479)
||.++|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999972
|